Query 020977
Match_columns 319
No_of_seqs 184 out of 1404
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 10:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prh_A Tryptophanyl-tRNA synth 100.0 2.7E-71 9.1E-76 543.1 22.7 226 79-318 36-261 (388)
2 3n9i_A Tryptophanyl-tRNA synth 100.0 2.5E-71 8.6E-76 536.5 21.0 228 77-317 14-241 (346)
3 3sz3_A Tryptophanyl-tRNA synth 100.0 1.5E-71 5E-76 537.5 18.8 230 78-317 6-235 (341)
4 2yy5_A Tryptophanyl-tRNA synth 100.0 3.6E-68 1.2E-72 515.1 20.1 230 77-318 3-237 (348)
5 1i6k_A TRPRS, tryptophanyl-tRN 100.0 2.1E-67 7.1E-72 506.2 22.8 226 79-318 2-227 (328)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 4.7E-67 1.6E-71 502.6 21.3 221 78-317 3-223 (322)
7 1yi8_B Tryptophanyl-tRNA synth 100.0 9.2E-66 3.1E-70 498.8 22.5 224 76-316 20-245 (351)
8 2el7_A Tryptophanyl-tRNA synth 100.0 9.4E-65 3.2E-69 489.3 22.2 221 79-317 2-226 (337)
9 2g36_A Tryptophanyl-tRNA synth 100.0 2.4E-64 8.1E-69 487.1 19.5 221 77-317 11-236 (340)
10 3vgj_A Tyrosyl-tRNA synthetase 100.0 6.5E-59 2.2E-63 454.0 19.8 216 77-317 55-279 (373)
11 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.3E-59 4.4E-64 459.3 14.1 219 77-317 32-283 (375)
12 3jxe_A Tryptophanyl-tRNA synth 100.0 4.9E-59 1.7E-63 457.1 16.6 209 76-317 71-286 (392)
13 2j5b_A Tyrosyl-tRNA synthetase 100.0 4.9E-59 1.7E-63 451.2 15.8 214 77-317 39-264 (348)
14 2cya_A Tyrosyl-tRNA synthetase 100.0 5.6E-59 1.9E-63 453.1 15.9 214 77-317 34-270 (364)
15 3a04_A Tryptophanyl-tRNA synth 100.0 5.6E-58 1.9E-62 447.3 17.8 208 77-317 69-288 (372)
16 3p0j_A Tyrosyl-tRNA synthetase 100.0 5.5E-55 1.9E-59 454.1 17.8 215 77-317 39-262 (690)
17 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.3E-54 4.4E-59 415.8 18.9 210 77-317 31-245 (323)
18 3hzr_A Tryptophanyl-tRNA synth 100.0 2.2E-54 7.4E-59 423.5 16.1 207 76-316 80-301 (386)
19 3tze_A Tryptophanyl-tRNA synth 100.0 4E-54 1.4E-58 423.9 16.0 208 76-317 99-322 (406)
20 1n3l_A Tyrosyl-tRNA synthetase 100.0 1.3E-53 4.6E-58 416.3 17.6 212 77-317 34-254 (372)
21 2zp1_A Tyrosyl-tRNA synthetase 100.0 1.6E-53 5.6E-58 407.2 16.3 204 76-317 26-235 (314)
22 2yxn_A Tyrosyl-tRNA synthetase 100.0 2.5E-53 8.5E-58 407.3 16.5 207 77-311 32-263 (322)
23 2dlc_X Tyrosyl-tRNA synthetase 100.0 5.1E-53 1.8E-57 415.0 16.1 213 77-317 38-259 (394)
24 2ip1_A Tryptophanyl-tRNA synth 100.0 2.7E-52 9.4E-57 414.0 16.5 206 77-316 101-327 (432)
25 1r6u_A Tryptophanyl-tRNA synth 100.0 3.6E-52 1.2E-56 413.3 14.6 206 77-316 107-334 (437)
26 3foc_A Tryptophanyl-tRNA synth 100.0 3.7E-52 1.3E-56 413.9 13.4 208 77-317 90-366 (451)
27 3hv0_A Tryptophanyl-tRNA synth 100.0 5.9E-52 2E-56 407.2 14.4 207 77-317 73-299 (393)
28 3i05_A Tryptophanyl-tRNA synth 100.0 6.8E-52 2.3E-56 407.0 13.2 208 76-317 76-302 (395)
29 1r6t_A Tryptophanyl-tRNA synth 100.0 1.8E-51 6E-56 412.5 15.6 205 77-316 154-381 (477)
30 2jan_A Tyrosyl-tRNA synthetase 100.0 3.5E-51 1.2E-55 405.7 17.0 206 77-311 31-260 (432)
31 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.1E-50 3.8E-55 402.5 18.6 210 76-314 35-260 (432)
32 2pid_A Tyrosyl-tRNA synthetase 100.0 6.5E-51 2.2E-55 395.4 14.7 205 77-311 45-282 (356)
33 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 3.4E-49 1.2E-53 390.7 19.8 203 77-311 31-259 (420)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 8.6E-50 3E-54 394.6 13.8 204 77-311 29-258 (419)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 1.3E-48 4.6E-53 383.4 18.6 221 77-315 63-324 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 5.5E-41 1.9E-45 349.0 16.7 208 72-315 376-594 (690)
37 1nzj_A Hypothetical protein YA 99.3 1.5E-12 5.2E-17 123.4 7.3 188 86-305 13-248 (298)
38 2ja2_A Glutamyl-tRNA synthetas 99.2 1.5E-11 5E-16 124.0 7.4 196 86-310 14-286 (498)
39 1j09_A Glutamyl-tRNA synthetas 99.2 1.5E-11 5.2E-16 123.1 7.1 191 86-310 9-272 (468)
40 3afh_A Glutamyl-tRNA synthetas 99.2 8.4E-12 2.9E-16 125.5 3.6 197 80-310 27-284 (488)
41 3al0_C Glutamyl-tRNA(Gln) amid 99.0 2E-11 6.9E-16 125.3 -0.7 199 79-310 130-388 (592)
42 2cfo_A Glutamyl-tRNA synthetas 99.0 8.9E-10 3E-14 110.9 11.2 192 85-310 8-276 (492)
43 2o5r_A Glutamyl-tRNA synthetas 98.5 2.8E-07 9.6E-12 92.5 9.6 199 79-310 14-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.4 2.9E-06 9.8E-11 85.4 14.6 198 78-310 25-293 (490)
45 3aii_A Glutamyl-tRNA synthetas 98.3 3.2E-06 1.1E-10 86.0 12.4 175 81-288 97-334 (553)
46 4gri_A Glutamate--tRNA ligase; 98.2 3.7E-06 1.3E-10 84.9 10.7 174 86-289 32-279 (512)
47 1qtq_A GLNRS, protein (glutami 98.1 4.7E-06 1.6E-10 84.8 8.4 94 79-180 27-130 (553)
48 2hz7_A Glutaminyl-tRNA synthet 97.9 6.8E-05 2.3E-09 79.7 11.8 90 83-180 71-170 (851)
49 2csx_A Methionyl-tRNA syntheta 97.5 0.00084 2.9E-08 66.7 13.4 79 79-159 6-99 (497)
50 2d5b_A Methionyl-tRNA syntheta 97.5 0.00051 1.7E-08 68.2 11.4 79 79-159 4-97 (500)
51 1iq0_A Arginyl-tRNA synthetase 97.1 0.00056 1.9E-08 70.0 6.2 41 79-119 106-152 (592)
52 3tqo_A Cysteinyl-tRNA syntheta 96.6 0.0071 2.4E-07 60.3 9.5 74 77-151 24-112 (462)
53 3fnr_A Arginyl-tRNA synthetase 96.4 0.011 3.6E-07 59.0 9.3 39 82-120 36-80 (464)
54 2zue_A Arginyl-tRNA synthetase 96.4 0.0032 1.1E-07 64.9 5.7 40 80-119 123-168 (629)
55 1f7u_A Arginyl-tRNA synthetase 95.7 0.035 1.2E-06 57.1 9.5 39 81-119 148-192 (607)
56 3u1f_A Methionyl-tRNA syntheta 95.4 0.069 2.4E-06 53.3 10.3 75 77-151 9-97 (542)
57 3h99_A Methionyl-tRNA syntheta 94.5 0.2 6.7E-06 50.5 10.8 80 78-159 19-112 (560)
58 1irx_A Lysyl-tRNA synthetase; 94.4 0.074 2.5E-06 53.3 7.3 79 78-159 21-129 (523)
59 3kfl_A Methionyl-tRNA syntheta 94.2 0.3 1E-05 49.4 11.4 88 70-159 19-120 (564)
60 4dlp_A Aminoacyl-tRNA syntheta 93.6 0.39 1.3E-05 48.0 10.9 79 79-159 26-119 (536)
61 1rqg_A Methionyl-tRNA syntheta 92.7 0.35 1.2E-05 50.5 9.4 74 78-151 3-91 (722)
62 2x1l_A Methionyl-tRNA syntheta 90.2 1.2 4E-05 44.3 9.7 72 86-159 22-106 (524)
63 3u1f_A Methionyl-tRNA syntheta 88.7 0.19 6.5E-06 50.1 2.7 15 216-230 278-292 (542)
64 4arc_A Leucine--tRNA ligase; l 88.3 1.4 4.8E-05 47.2 9.1 73 78-150 54-140 (880)
65 1li5_A Cysrs, cysteinyl-tRNA s 87.4 1.3 4.4E-05 43.8 7.7 82 77-160 21-117 (461)
66 2x1l_A Methionyl-tRNA syntheta 87.0 0.18 6.2E-06 50.1 1.3 15 215-229 264-278 (524)
67 3c8z_A Cysteinyl-tRNA syntheta 86.9 3.2 0.00011 40.2 10.1 78 81-160 43-134 (414)
68 3kfl_A Methionyl-tRNA syntheta 85.8 0.3 1E-05 49.4 2.2 55 215-297 293-350 (564)
69 1wkb_A Leucyl-tRNA synthetase; 84.9 0.44 1.5E-05 50.1 3.0 60 215-298 602-662 (810)
70 3sp1_A Cysteinyl-tRNA syntheta 84.5 5.1 0.00017 40.2 10.4 73 78-151 42-139 (501)
71 3c8z_A Cysteinyl-tRNA syntheta 82.9 0.42 1.4E-05 46.5 1.7 30 209-238 237-267 (414)
72 1gax_A Valrs, valyl-tRNA synth 82.3 2.2 7.6E-05 45.4 7.1 72 78-149 35-136 (862)
73 1wz2_A Leucyl-tRNA synthetase; 82.3 0.64 2.2E-05 50.1 3.0 60 215-298 602-662 (967)
74 1li5_A Cysrs, cysteinyl-tRNA s 82.0 0.61 2.1E-05 46.1 2.5 66 208-298 212-278 (461)
75 4dlp_A Aminoacyl-tRNA syntheta 81.9 0.53 1.8E-05 47.0 2.1 14 216-229 276-289 (536)
76 1ffy_A Isoleucyl-tRNA syntheta 81.6 0.74 2.5E-05 49.4 3.2 57 214-297 546-606 (917)
77 3h99_A Methionyl-tRNA syntheta 79.7 0.72 2.5E-05 46.3 2.2 15 279-297 342-356 (560)
78 2v0c_A Aminoacyl-tRNA syntheta 79.3 3.4 0.00012 44.0 7.3 73 78-150 34-120 (878)
79 1ile_A Ilers, isoleucyl-tRNA s 78.5 1 3.5E-05 47.5 3.0 14 215-228 543-556 (821)
80 1gax_A Valrs, valyl-tRNA synth 77.1 0.76 2.6E-05 49.0 1.5 58 215-297 480-539 (862)
81 1wkb_A Leucyl-tRNA synthetase; 74.9 3.3 0.00011 43.4 5.7 45 78-122 35-85 (810)
82 1irx_A Lysyl-tRNA synthetase; 72.2 0.97 3.3E-05 45.2 0.7 72 213-309 227-307 (523)
83 1ffy_A Isoleucyl-tRNA syntheta 71.4 4.7 0.00016 43.2 5.8 74 78-151 49-150 (917)
84 3sp1_A Cysteinyl-tRNA syntheta 71.2 2.1 7.2E-05 42.9 2.9 32 207-238 244-276 (501)
85 1ile_A Ilers, isoleucyl-tRNA s 65.1 2.9 0.0001 44.0 2.6 45 78-122 39-89 (821)
86 2v0c_A Aminoacyl-tRNA syntheta 62.3 4.3 0.00015 43.3 3.3 24 215-238 530-554 (878)
87 4arc_A Leucine--tRNA ligase; l 59.2 5.4 0.00018 42.6 3.4 27 214-240 541-568 (880)
88 3oqi_A YVMC, putative uncharac 56.4 38 0.0013 31.1 8.1 82 77-162 28-122 (257)
89 1wz2_A Leucyl-tRNA synthetase; 52.4 4.7 0.00016 43.4 1.6 46 77-122 34-85 (967)
90 3foc_A Tryptophanyl-tRNA synth 44.3 4 0.00014 40.4 -0.5 17 216-232 221-249 (451)
91 3oqv_A ALBC; rossman fold, cyc 40.1 53 0.0018 29.9 6.3 84 77-162 28-124 (247)
92 1rqg_A Methionyl-tRNA syntheta 33.2 7.4 0.00025 40.4 -0.6 30 261-298 327-356 (722)
93 4erh_A Outer membrane protein 28.3 1.6E+02 0.0055 23.5 7.0 58 98-155 39-101 (148)
No 1
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=2.7e-71 Score=543.07 Aligned_cols=226 Identities=52% Similarity=0.798 Sum_probs=206.8
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QS 158 (319)
.+||||++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+||
T Consensus 36 ~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS 115 (388)
T 3prh_A 36 QTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQS 115 (388)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHH
Q 020977 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (319)
Q Consensus 159 d~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia~ 238 (319)
+|++|.+++|+|+|.+++++|+|+.+||++.+.. +++++|+|+||+|||||||+|++|+||||+||+||+|||||+|+
T Consensus 116 ~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~ 193 (388)
T 3prh_A 116 EVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAE 193 (388)
T ss_dssp GSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876553 57899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCCC
Q 020977 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNL 318 (319)
Q Consensus 239 r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~~ 318 (319)
|||+.||. +|.+|++++++.+++||||+||.+|||||+|+++|+|+|+|+|++|++|||+|+||+.+.
T Consensus 194 rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~~ 261 (388)
T 3prh_A 194 RFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEGI 261 (388)
T ss_dssp HHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSCC
T ss_pred HhCcccCC------------CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCCc
Confidence 99999974 488999999876689999988889999999987899999999999999999999998653
No 2
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=2.5e-71 Score=536.53 Aligned_cols=228 Identities=52% Similarity=0.838 Sum_probs=215.5
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
.++++|+|++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+
T Consensus 14 ~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~ 93 (346)
T 3n9i_A 14 SKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFV 93 (346)
T ss_dssp -CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEE
T ss_pred CCCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEe
Confidence 46799999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHH
Q 020977 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236 (319)
Q Consensus 157 QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdi 236 (319)
||+|++|.+++|+|.|.+++++|+|+.+||++..+.+ +++++|+|+||+|||||||+|++|+||||+||+||+||+||+
T Consensus 94 qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdi 172 (346)
T 3n9i_A 94 QSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDI 172 (346)
T ss_dssp GGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHH
Confidence 9999999999999999999999999999999876653 568999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCC
Q 020977 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLM 316 (319)
Q Consensus 237 a~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~ 316 (319)
|+|||+.||. +|++|++++++.+++||||+||.+|||||+|+++|+|+|+|+|++|++|||+|+||+.
T Consensus 173 a~rfn~~yg~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~~ 240 (346)
T 3n9i_A 173 ASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSD 240 (346)
T ss_dssp HHHHHHHHSS------------CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCCC
T ss_pred HHHhccccCC------------cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCCC
Confidence 9999999984 4889999998666899999889889999998666999999999999999999999997
Q ss_pred C
Q 020977 317 N 317 (319)
Q Consensus 317 ~ 317 (319)
+
T Consensus 241 ~ 241 (346)
T 3n9i_A 241 E 241 (346)
T ss_dssp S
T ss_pred C
Confidence 5
No 3
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=1.5e-71 Score=537.46 Aligned_cols=230 Identities=47% Similarity=0.756 Sum_probs=216.1
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
+++||+|++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHH
Q 020977 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia 237 (319)
|+|++|.+++|+|+|.+++++|+|+.+||++..+++ +++++|+|+||+|||||||+|++|+||||+||+||+||+||+|
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999887764 5789999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020977 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 238 ~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|||+.||.+. .+|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 165 ~rfn~~yg~~~---------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 165 TRFNNIYSPEQ---------PIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHCSSS---------CSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHhchhccCCC---------cccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 99999998410 148899999876558999998888899999987679999999999999999999999975
No 4
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=3.6e-68 Score=515.14 Aligned_cols=230 Identities=41% Similarity=0.617 Sum_probs=210.6
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
.++++|+||+|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+
T Consensus 3 ~~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~ 82 (348)
T 2yy5_A 3 MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFL 82 (348)
T ss_dssp -CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred CCeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-----CCCcccccccchHHHhhhhhccCCCEEEecCcchHHHH
Q 020977 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (319)
Q Consensus 157 QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-----~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hle 231 (319)
||++++|.+++|+++|.+++++|+|+.+||++.++.+ .+++++|+|+||+|||||||+|++|+||||+||++|+|
T Consensus 83 qS~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~le 162 (348)
T 2yy5_A 83 QSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLE 162 (348)
T ss_dssp GGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHH
T ss_pred CCcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHH
Confidence 9999999999999999999999999999998765532 35789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcc
Q 020977 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRF 311 (319)
Q Consensus 232 LaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A 311 (319)
++||+|+|||+.||. +|++|++++++.+++||||++|.+|||||+++++++|+|+|+|++|++|||+|
T Consensus 163 l~Rdia~r~n~~yg~------------~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a 230 (348)
T 2yy5_A 163 LTRDLAQRIQKKFKL------------KLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQA 230 (348)
T ss_dssp HHHHHHHHHHHHHCC------------CCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhccc------------ccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhC
Confidence 999999999999984 48899999976558999997667899999985444999999999999999999
Q ss_pred ccCCCCC
Q 020977 312 LTFLMNL 318 (319)
Q Consensus 312 ~Td~~~~ 318 (319)
+|||.+.
T Consensus 231 ~td~~~~ 237 (348)
T 2yy5_A 231 TTDSFNK 237 (348)
T ss_dssp CCCSSCC
T ss_pred CCCCccc
Confidence 9999753
No 5
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=2.1e-67 Score=506.15 Aligned_cols=226 Identities=51% Similarity=0.789 Sum_probs=210.4
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QS 158 (319)
+++|+||+|||.+|||||+|++++|++||++++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHH
Q 020977 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (319)
Q Consensus 159 d~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia~ 238 (319)
+|++|.+++|+++|.+++++|+|+.+||++..+ + +++++|+|+||+||||||++|++|+||||+||++|++++||+|+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999988755 2 67899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCCC
Q 020977 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNL 318 (319)
Q Consensus 239 r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~~ 318 (319)
|||+.||. +|++|++++++.+++||||++|++|||||.++..++|+|+|+|++|++|||+|+|||.+.
T Consensus 160 r~n~~yg~------------~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HhCccccc------------ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 99999984 488999999755689999966668999999732233999999999999999999999753
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=4.7e-67 Score=502.63 Aligned_cols=221 Identities=38% Similarity=0.659 Sum_probs=207.2
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
..++|+||+|||.+|||||+|++++|++||++++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 45899999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHH
Q 020977 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia 237 (319)
|+|++|.+++|.++|.+++++|+|+.+||++.... +++++|+|+||+|||||||+|++|+||||.||+||++++||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999876542 5799999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020977 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 238 ~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|||+.||. .|++|++++...+++|||| +| +|||||.+ |+|+|+|+|++|++|||+|+|||..
T Consensus 161 ~r~n~~~g~------------~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~~ 223 (322)
T 3tzl_A 161 LKVNNEWGE------------IFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDSTA 223 (322)
T ss_dssp HHHHHHHCS------------CSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCCC
T ss_pred HHhcccccC------------CCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCcc
Confidence 999999983 4899999886545899999 77 89999985 6899999999999999999999864
No 7
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=9.2e-66 Score=498.79 Aligned_cols=224 Identities=32% Similarity=0.468 Sum_probs=209.7
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020977 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
++++++|+||+|||.+|||||+|++++|++||+.++++|+|||+||+++ +.+++++++++++++++|+|+|+||+|++|
T Consensus 20 ~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i 99 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTC 99 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEE
T ss_pred CCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 5689999999999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHH
Q 020977 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLa 233 (319)
|+||+|++|.++.|.|+|.+++++|+|+.+||++..+.+ .+++++|+|+||+||||||++|++|+||||+||++|++++
T Consensus 100 ~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~ 179 (351)
T 1yi8_B 100 VVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQT 179 (351)
T ss_dssp EEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred EEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHH
Confidence 999999999999999999999999999999999886553 3678999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcccc
Q 020977 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313 (319)
Q Consensus 234 Rdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~T 313 (319)
||+|+|||+.||. +|++|+++++.. ++|||| ||.+|||||.+ |+|+|+|+|++|++||++|+|
T Consensus 180 rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~t 242 (351)
T 1yi8_B 180 REIVRRFNALYAP------------VLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKVMGMYT 242 (351)
T ss_dssp HHHHHHHHHHTCS------------CSCCCEEEECSS-CSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhccc------------ccCCCeeeeecC-ccccCC-CCccccCCCCC---CeecCCCCHHHHHHHHHhcCC
Confidence 9999999999873 388899887633 899999 88779999986 589999999999999999999
Q ss_pred CCC
Q 020977 314 FLM 316 (319)
Q Consensus 314 d~~ 316 (319)
|+.
T Consensus 243 d~~ 245 (351)
T 1yi8_B 243 DPG 245 (351)
T ss_dssp CTT
T ss_pred Ccc
Confidence 984
No 8
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=9.4e-65 Score=489.31 Aligned_cols=221 Identities=48% Similarity=0.810 Sum_probs=205.9
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-c-CcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g-~~~~ilIaDlhA~t~~--~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++|+||+|||.+|||||+|++++|++||+ | ++++|+|||+||++++ .+++++++++++++++|+|+|+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 589999999999999999999999999998 6 9999999999999997 79999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHH
Q 020977 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaR 234 (319)
|+||+|++|.+++|+++|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||.||++|++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999986543 35789999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccC
Q 020977 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTF 314 (319)
Q Consensus 235 dia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td 314 (319)
|+|+|||+.||. +|++|+++++..+++|||| +|.+|||||.+ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g~------------~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFGE------------TFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHSS------------CCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcCc------------ccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 999999999984 3888999998655799999 66789999986 5899999999999999999999
Q ss_pred CCC
Q 020977 315 LMN 317 (319)
Q Consensus 315 ~~~ 317 (319)
+.+
T Consensus 224 ~~~ 226 (337)
T 2el7_A 224 PQR 226 (337)
T ss_dssp C--
T ss_pred Ccc
Confidence 844
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-64 Score=487.06 Aligned_cols=221 Identities=40% Similarity=0.655 Sum_probs=202.4
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
..+++|+|++|||.+|||||+|++++|++||+ |++++|+|||+||+|+ +.|++++++++++++++|+|+|+||+|++|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 36899999999999999999999999999998 6999999999999998 788989999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhchHH---HHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHH
Q 020977 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~---~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hle 231 (319)
|+||+|++|.++.|.|+|.+++++|+|+.+||+ +.+. .+++++|+|+||+||||||++|++|+||||+||+||++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999998 4432 25689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcc
Q 020977 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRF 311 (319)
Q Consensus 232 LaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A 311 (319)
++||+|+|||+.||. +|++|++++... ++|||| +|. |||||.+ |+|+|+|+|++|++||++|
T Consensus 169 l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~i~~Ki~~a 230 (340)
T 2g36_A 169 LTREIARRFNYLYDE------------VFPEPEAILSRV-PKLPGT-DGR-KMSKSYG---NIINLEISEKELEQTILRM 230 (340)
T ss_dssp HHHHHHHHHHHHSCC------------CCCCCEEEECCS-CCCCCT-TSS-CCCGGGT---CCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhccc------------ccCCchhhhccc-cccCCC-Ccc-ccCCCCC---CeEeeeCCHHHHHHHHHhC
Confidence 999999999999873 388899877543 899999 684 9999985 6899999999999999999
Q ss_pred ccCCCC
Q 020977 312 LTFLMN 317 (319)
Q Consensus 312 ~Td~~~ 317 (319)
+||+.+
T Consensus 231 ~td~~~ 236 (340)
T 2g36_A 231 MTDPAR 236 (340)
T ss_dssp CCCTTC
T ss_pred CCCccc
Confidence 999854
No 10
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=6.5e-59 Score=454.02 Aligned_cols=216 Identities=21% Similarity=0.265 Sum_probs=192.1
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||.+||||++....+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 55 ~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~ 134 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENV 134 (373)
T ss_dssp SSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTE
T ss_pred CCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 47899999999999999997544457899999 89999999999999983 589999999999999999999999999
Q ss_pred EEEEcccch-hhhHHHHHHh----ccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcch
Q 020977 153 SVFVQSHVR-AHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (319)
Q Consensus 153 ~if~QSd~~-~~~el~w~L~----~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~ 227 (319)
+||+||+|+ +|.+++|.+. ..++++|+.++.+++.+. ..+++++|+|+||+||||||++|++|+||||.||+
T Consensus 135 ~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~---~~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~ 211 (373)
T 3vgj_A 135 QFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS---EGEENYCSQILYPCMQCADIFFLNVDICQLGIDQR 211 (373)
T ss_dssp EEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC---TTSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh---ccCCCChHHHHHHHHHHhcccccCCcEEEcchhhH
Confidence 999999998 8999999765 478999999998887432 22578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020977 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 228 ~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
+|++++||+|+|||+.|+ |..+.+ ++||||+||.+|||||.| +|+|+|+|+|++|++|
T Consensus 212 ~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~K 269 (373)
T 3vgj_A 212 KVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNRK 269 (373)
T ss_dssp HHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHHH
Confidence 999999999999996542 545554 679999899889999997 5899999999999999
Q ss_pred hhccccCCCC
Q 020977 308 FRRFLTFLMN 317 (319)
Q Consensus 308 I~~A~Td~~~ 317 (319)
||+|+|||.+
T Consensus 270 I~kA~td~~~ 279 (373)
T 3vgj_A 270 IKKAYCPPNV 279 (373)
T ss_dssp HHHSCCCTTC
T ss_pred HHhCcCCCCC
Confidence 9999999853
No 11
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-59 Score=459.27 Aligned_cols=219 Identities=21% Similarity=0.284 Sum_probs=195.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHH-HHHH----HHHHHcCC
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACGI 147 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~i~~~~-~~~~----~~~lA~Gl 147 (319)
+++++|+||+|||.+|||||++++.+|++||+ |++++|+|||+||++++ .+++++++++ ++++ ++|+|+|+
T Consensus 32 ~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~ 111 (375)
T 2cyc_A 32 APLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGG 111 (375)
T ss_dssp CCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred CCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999998 79999999999999985 3899999999 8898 99999999
Q ss_pred CCCCcEEEEcccchhhhHHHHHH----hccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEec
Q 020977 148 DNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 223 (319)
Q Consensus 148 Dp~k~~if~QSd~~~~~el~w~L----~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG 223 (319)
||+|++||+||+|++|. ++|.+ ++.++++||.|+.+||++. ..+++++|+|+||+||||||++|++|+||||
T Consensus 112 dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~---~~~~i~~g~f~YP~LQaaDil~~~~~~vp~G 187 (375)
T 2cyc_A 112 DPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ---MGEAIDFAKLIYPMMQVADIFYQGVTIAHAG 187 (375)
T ss_dssp CGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC---CCTTCBTHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc---cCCCCChHHHHHHHHHHHHHHHhCCCeeccc
Confidence 99999999999999988 88987 9999999999999998643 2356899999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhh---hh-CCccccccCCCCCccccCCccccCCCCcccccCCCC----------------CCc
Q 020977 224 EDQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSK 283 (319)
Q Consensus 224 ~DQ~~hleLaRdia~r~n~---~~-g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg----------------~~K 283 (319)
.||++|++++||+|+|||+ .| |.. | +|..+.+ ++||||++| .+|
T Consensus 188 ~DQ~~~i~l~rdla~r~n~~~~~~~g~~------------~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~K 251 (375)
T 2cyc_A 188 MDQRKAHVIAIEVAQKLRYHPIVHEGEK------------L-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMK 251 (375)
T ss_dssp GGGHHHHHHHHHHGGGCSSSCEEETTEE------------E-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHB
T ss_pred chHHHHHHHHHHHHHHhCCccccccccc------------C-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhc
Confidence 9999999999999999997 12 210 1 4655554 789999543 489
Q ss_pred CCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020977 284 MSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 284 MSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
||||.| +|+|+|+|+|++|++|||+|+|||.+
T Consensus 252 MSKS~~--~~~I~L~d~p~~i~~KI~~A~t~~~~ 283 (375)
T 2cyc_A 252 MSKSKP--YSAVFIHDSPEEIRQKLRKAFCPARE 283 (375)
T ss_dssp GGGSCG--GGSCBTTCCHHHHHHHHHHSCCCTTC
T ss_pred ccCCCC--CCeeccCCCHHHHHHHHHHhcCCCCC
Confidence 999997 48999999999999999999999854
No 12
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.9e-59 Score=457.14 Aligned_cols=209 Identities=21% Similarity=0.283 Sum_probs=186.0
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-C-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 020977 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnylg~i-~~~~~lQ~--g~~~~ilIaDlhA~t~-~-~~~~~i~~~~~~~~~~~lA~GlDp~ 150 (319)
.+++++|+|++|||.+|||||++++ .+| ||+ |++++|+|||+||+++ + .+++++++++++++++|+|+|+||+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD 148 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence 3578999999999999999999986 778 787 7889999999999987 3 6999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhcc-CCCEEEecCcchHH
Q 020977 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQH 229 (319)
Q Consensus 151 k~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~-~adlvpvG~DQ~~h 229 (319)
|++||+||+|+++.++.|.|++.+++++++++.+|+ +++++|+|+||+|||||||++ ++|+||||.||+||
T Consensus 149 kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~h 220 (392)
T 3jxe_A 149 KTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPY 220 (392)
T ss_dssp SEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHH
T ss_pred ceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHH
Confidence 999999999999999999999999999998886653 468999999999999999999 69999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020977 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 leLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
++++||+|+||| +++|+++++ ++||||+++++|||||+| +|+|+|+|+|++|++|||
T Consensus 221 l~l~Rdla~r~n------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--ns~I~L~D~p~~I~kKI~ 277 (392)
T 3jxe_A 221 WRLQRDFAESLG------------------YYKTAALHS---KFVPSLTSLSGKMSASKP--ETAIYLTDSPEDVEKKVW 277 (392)
T ss_dssp HHHHHHHTGGGT------------------SCCCEEEEE---CCCCCSSCSSSCCCTTSG--GGCCBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------------CCCCeeeec---ccccCCCCCccccccCCC--CCeeeCCCCHHHHHHHHH
Confidence 999999999999 346888886 679999544469999997 479999999999999999
Q ss_pred c-cccCCCC
Q 020977 310 R-FLTFLMN 317 (319)
Q Consensus 310 ~-A~Td~~~ 317 (319)
+ |+||+..
T Consensus 278 k~A~td~~~ 286 (392)
T 3jxe_A 278 KFTLTGGRP 286 (392)
T ss_dssp TCC------
T ss_pred hhccCCCCc
Confidence 9 9999864
No 13
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=4.9e-59 Score=451.18 Aligned_cols=214 Identities=21% Similarity=0.238 Sum_probs=180.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~---~~~~i~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||.+|||||++.+.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 118 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT 118 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce
Confidence 47899999999999999999999999999999 799999999999999853 89999999999999999999999999
Q ss_pred EEEEcccc-hhhhHHHHHHhc----cCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhcc---CCCEEEecC
Q 020977 153 SVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVGE 224 (319)
Q Consensus 153 ~if~QSd~-~~~~el~w~L~~----~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~---~adlvpvG~ 224 (319)
+||+||+| ++|. ++|.+.+ .++++++.++.+++.+. +.+++++|+|+||+||||||++| ++|+||||.
T Consensus 119 ~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~---~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~ 194 (348)
T 2j5b_A 119 RFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGI 194 (348)
T ss_dssp EEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCBG
T ss_pred EEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh---ccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEecc
Confidence 99999998 5566 8998665 88888888888776542 22568999999999999999999 999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHH
Q 020977 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVS 304 (319)
Q Consensus 225 DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I 304 (319)
||++|++++||+|+|||+.| |..+.+ ++||||+||.+|||||.| +|+|+|+|+|++|
T Consensus 195 DQ~~~i~l~Rdia~r~~~~~------------------p~~~~~---~~l~gL~dg~~KMSKS~~--~~~I~L~d~p~~i 251 (348)
T 2j5b_A 195 DQRKVNMLAIEYANDRGLKI------------------PISLSH---HMLMSLSGPKKKMSKSDP--QGAIFMDDTEQEV 251 (348)
T ss_dssp GGHHHHHHHHHHHHHTTCCC------------------CEEEEB---CCCCCTTCSSCCCSTTCG--GGSCBTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCC------------------ceeecC---ccccCCCCcccccccCCC--CCeEeecCCHHHH
Confidence 99999999999999999542 555544 789999888889999987 4899999999999
Q ss_pred HHhhhccccCCCC
Q 020977 305 HKFFRRFLTFLMN 317 (319)
Q Consensus 305 ~kKI~~A~Td~~~ 317 (319)
++|||+|+|||.+
T Consensus 252 ~kKI~ka~td~~~ 264 (348)
T 2j5b_A 252 SEKISRAYCTDET 264 (348)
T ss_dssp HHHHHHSCCCSSS
T ss_pred HHHHhcccCCCCC
Confidence 9999999999973
No 14
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=5.6e-59 Score=453.13 Aligned_cols=214 Identities=20% Similarity=0.280 Sum_probs=188.9
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||.+|||| ++++.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~ 112 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV 112 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 4789999999999999999 788999999999 79999999999999985 699999999999999999999999999
Q ss_pred EEEEcccchhhhHHHHH----HhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchH
Q 020977 153 SVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (319)
Q Consensus 153 ~if~QSd~~~~~el~w~----L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~ 228 (319)
+||+||+|+++ +++|. ++|.+++++|.|+.+|+++.. ++.++++|+|+||+||||||++|++|+||||.||++
T Consensus 113 ~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~ 189 (364)
T 2cya_A 113 RFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189 (364)
T ss_dssp EEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred EEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHHH
Confidence 99999999988 67787 999999999999999987543 223588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCC---------------CCCcCCCCCCCCCC
Q 020977 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQS 293 (319)
Q Consensus 229 hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~d---------------g~~KMSKS~p~~~s 293 (319)
|++++||+|+|||+ ++|..++. ++||||++ |.+|||||++ +|
T Consensus 190 ~~~l~rdla~r~~~------------------~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~--~~ 246 (364)
T 2cya_A 190 AHMLARDVAEKLGR------------------KKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP--ET 246 (364)
T ss_dssp HHHHHHHHHTTTTC------------------CCCEEEEE---CCCBCSSCC----------------CBCCSSSG--GG
T ss_pred HHHHHHHHHHHcCC------------------CCceeecc---ceeeCCCcccccccccccccccccccccCCCCC--CC
Confidence 99999999999993 34777665 67999954 3689999987 58
Q ss_pred eeecCCCHHHHHHhhhccccCCCC
Q 020977 294 RINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 294 ~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|+|+|+|++|++|||+|+||+.+
T Consensus 247 ~I~L~d~p~~i~~Ki~~a~td~~~ 270 (364)
T 2cya_A 247 AVFVVDSDDDIRRKIRKAYCPAKQ 270 (364)
T ss_dssp SCBTTCCHHHHHHHHHTSCCCTTC
T ss_pred EeeccCCHHHHHHHHHhCcCCCCC
Confidence 999999999999999999999964
No 15
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=5.6e-58 Score=447.28 Aligned_cols=208 Identities=29% Similarity=0.401 Sum_probs=186.7
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKAS 153 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~--~~~~i~~~~~~~~~~~lA~GlDp~k~~ 153 (319)
++++||||++|||.+|||||+++ .+|+.+|+ +++++|+||||||+|++. +++.+++++++++++|+||||||+|++
T Consensus 69 k~~~v~sG~~PTG~lHLGhyv~~-~~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~ 147 (372)
T 3a04_A 69 ERVAVLTGFMPSGKFHFGHKLTV-DQLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE 147 (372)
T ss_dssp CCCEEEEEECCCSCCBHHHHHHH-HHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE
T ss_pred CCCEEEeCcCCCcHhHHHHHHHH-HHHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc
Confidence 58899999999999999999985 56777886 899999999999999854 567799999999999999999999999
Q ss_pred EEEccc-chhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhc--------cCCCEEEecC
Q 020977 154 VFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVGE 224 (319)
Q Consensus 154 if~QSd-~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~--------~~adlvpvG~ 224 (319)
||+||+ ..++.++.|.+++.+++++++++.+ ..+.|.++||+|||||||+ |++++||||+
T Consensus 148 if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG~ 216 (372)
T 3a04_A 148 FYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGA 216 (372)
T ss_dssp EEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEEG
T ss_pred hhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccch
Confidence 999999 4678999999999999999887632 3578999999999999999 5566999999
Q ss_pred cchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHH
Q 020977 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVS 304 (319)
Q Consensus 225 DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I 304 (319)
||+||+|||||+|+|||..|+ +++|..+++ +++||| +| .|||||+| +|+|+|+|+|++|
T Consensus 217 DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~---~~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~i 275 (372)
T 3a04_A 217 DQDPHLRLTRDLADRMAGVVE--------------LERPASTYH---KLQPGL-DG-RKMSSSRP--DSTIFLTDPPEVA 275 (372)
T ss_dssp GGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEE---CCCBCT-TS-SBCCTTSG--GGSCBTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccc--------------ccChhhhhh---cccCCC-CC-CccCCCCC--CcccccCCCHHHH
Confidence 999999999999999998775 567888887 569999 77 79999997 6999999999999
Q ss_pred HHhhhccccCCCC
Q 020977 305 HKFFRRFLTFLMN 317 (319)
Q Consensus 305 ~kKI~~A~Td~~~ 317 (319)
++|||+|+||+..
T Consensus 276 ~kKI~ka~td~~~ 288 (372)
T 3a04_A 276 RNKLFRALTGGRA 288 (372)
T ss_dssp HHHHHTCCCSCCS
T ss_pred HHHHhcCccCCCC
Confidence 9999999999864
No 16
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=5.5e-55 Score=454.08 Aligned_cols=215 Identities=22% Similarity=0.330 Sum_probs=186.9
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~GlDp~k~ 152 (319)
++++||+||+|||.+||||++....+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 118 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 118 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHe
Confidence 47899999999999999997654447889998 79999999999999973 588999999999999999999999999
Q ss_pred EEEEccc-chhhhHHHHHH----hccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcch
Q 020977 153 SVFVQSH-VRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (319)
Q Consensus 153 ~if~QSd-~~~~~el~w~L----~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~ 227 (319)
+||+||+ +++|.+++|.+ ++.++++||.++.+++.+. + .++++|+|+||+||||||++|++|+||||.||+
T Consensus 119 ~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~---~-~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~ 194 (690)
T 3p0j_A 119 LFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKT---E-GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQR 194 (690)
T ss_dssp EEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhc---c-CCCchhhHhhHHHHHHHHHhhCCCEEeccccHH
Confidence 9999999 57889999976 4589999999999988543 2 248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020977 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 228 ~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
+|++++||+|+|||+.|+ |..+.. ++||||+||.+|||||.+ +|+|+|+|+|++|++|
T Consensus 195 ~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~kK 252 (690)
T 3p0j_A 195 KVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARK 252 (690)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccCCHHHHHHH
Confidence 999999999999996532 444544 679999889889999986 4899999999999999
Q ss_pred hhccccCCCC
Q 020977 308 FRRFLTFLMN 317 (319)
Q Consensus 308 I~~A~Td~~~ 317 (319)
||+|+|||..
T Consensus 253 I~~A~td~~~ 262 (690)
T 3p0j_A 253 IRQAYCPRVK 262 (690)
T ss_dssp HHTSCCCSSC
T ss_pred HHhCcCCCcc
Confidence 9999999754
No 17
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.3e-54 Score=415.80 Aligned_cols=210 Identities=25% Similarity=0.369 Sum_probs=189.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++++|+||+|||.+||||+ +++.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+||+|++|
T Consensus 31 ~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i 109 (323)
T 2cyb_A 31 EKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKF 109 (323)
T ss_dssp SCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEE
T ss_pred CCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 46899999999999999986 67899999999 899999999999999965 8999999999999999999999999999
Q ss_pred EEcccch---hhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHH
Q 020977 155 FVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (319)
Q Consensus 155 f~QSd~~---~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hle 231 (319)
|+||+|+ ++.++.|.++|.++++++.|+.+++.+ . . ++.++|+|+||+||||||+++++|+||||.||++|++
T Consensus 110 ~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~--~-~-~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~ 185 (323)
T 2cyb_A 110 VLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSR--R-K-EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHM 185 (323)
T ss_dssp EEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCS--C-S-SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEcchhccchHHHHHHHHHhCccCHHHHhccchhhcc--c-c-CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHH
Confidence 9999996 788999999999999999998765421 1 1 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcc
Q 020977 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRF 311 (319)
Q Consensus 232 LaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A 311 (319)
++||+|++||+ +.|..++. ++||+| +| +||||| + +|+|+|+|+|++|++||++|
T Consensus 186 l~rdla~~~~~------------------~~p~~l~~---pll~~l-~G-~KMSKS-~--~n~I~l~d~p~~i~~Ki~~a 239 (323)
T 2cyb_A 186 LARENLPRLGY------------------SSPVCLHT---PILVGL-DG-QKMSSS-K--GNYISVRDPPEEVERKIRKA 239 (323)
T ss_dssp HHHHHGGGGTC------------------CCCEEEEE---CCCBCT-TS-SBCCTT-T--TCSCBTTCCHHHHHHHHHTS
T ss_pred HHHHHHHhcCC------------------CCceEEec---CcccCC-CC-CcccCC-c--CceeCCCCCHHHHHHHHHhc
Confidence 99999999983 24666665 679999 67 899999 4 68999999999999999999
Q ss_pred ccCCCC
Q 020977 312 LTFLMN 317 (319)
Q Consensus 312 ~Td~~~ 317 (319)
+||+.+
T Consensus 240 ~td~~~ 245 (323)
T 2cyb_A 240 YCPAGV 245 (323)
T ss_dssp CCCTTC
T ss_pred CCCCCC
Confidence 999853
No 18
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=2.2e-54 Score=423.50 Aligned_cols=207 Identities=16% Similarity=0.182 Sum_probs=183.5
Q ss_pred CCCceEEEeeCCCCcchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020977 76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnylg~-i~~~~~lQ~--g~~~~ilIaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k 151 (319)
.+++++|+||+|||.+|||||+++ +.+| ||+ ++.++|+|+|+|+++.+ .+++++++++++++++|+|+|+||+|
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK 157 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 357899999999999999999998 5788 887 57789999999999984 79999999999999999999999999
Q ss_pred cEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhh--------ccC-CCEEE
Q 020977 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVP 221 (319)
Q Consensus 152 ~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl--------~~~-adlvp 221 (319)
++||+||+|++ .+...+.+|.|+++|+++.++++ .+++++|+|+||+|||||++ .++ +|+||
T Consensus 158 t~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vp 229 (386)
T 3hzr_A 158 TFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVL 229 (386)
T ss_dssp EEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEE
T ss_pred eEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccc
Confidence 99999999985 34556788999999999988766 46799999999999999877 355 99999
Q ss_pred ecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCH
Q 020977 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 301 (319)
Q Consensus 222 vG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dsp 301 (319)
||+||++|++++||+|+||| +++|..+.+ ++|||| +|.+|||||++ +|+|+|+|+|
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p 285 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNA 285 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCH
T ss_pred cccchHHHHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCH
Confidence 99999999999999999999 345755643 789999 67569999987 6999999999
Q ss_pred HHHHHhhhc-cccCCC
Q 020977 302 DVSHKFFRR-FLTFLM 316 (319)
Q Consensus 302 e~I~kKI~~-A~Td~~ 316 (319)
++|++|||+ |+||+.
T Consensus 286 ~~i~kKI~k~A~t~g~ 301 (386)
T 3hzr_A 286 KQVERKINKLAFSGGR 301 (386)
T ss_dssp HHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHhccCCCC
Confidence 999999999 988864
No 19
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4e-54 Score=423.88 Aligned_cols=208 Identities=19% Similarity=0.230 Sum_probs=184.4
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 020977 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 76 ~~~~~i~tGi~PTG-~lHLGnylg~-i~~~~~lQ~--g~~~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~ 150 (319)
.+++++|+|++||| .+|||||+++ +.+| ||+ ++.++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 176 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK 176 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 35889999999999 7999999998 4778 887 6788999999999875 67999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhh--------ccCCCEEE
Q 020977 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVP 221 (319)
Q Consensus 151 k~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl--------~~~adlvp 221 (319)
|++||.||+|++ .+...+.+|.|+++|+++.++.+ .+++++|+|+||+|||||++ .+++|+||
T Consensus 177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp 248 (406)
T 3tze_A 177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP 248 (406)
T ss_dssp GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence 999999999985 23345678999999999988876 46799999999999999955 46799999
Q ss_pred ecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-CcCCCCCCCCCCeeecCCC
Q 020977 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDP 300 (319)
Q Consensus 222 vG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~-~KMSKS~p~~~s~I~L~Ds 300 (319)
||.||++|++++||+|+||| +++|..+.+ ++|||| +|. +|||||.| +|+|+|+|+
T Consensus 249 vG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~ 304 (406)
T 3tze_A 249 AAVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDA 304 (406)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCC
T ss_pred eccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCC
Confidence 99999999999999999998 456887765 789999 665 69999997 589999999
Q ss_pred HHHHHHhhhc-cccCCCC
Q 020977 301 KDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 301 pe~I~kKI~~-A~Td~~~ 317 (319)
|++|++|||+ |+||+..
T Consensus 305 p~~I~kKI~k~A~td~~~ 322 (406)
T 3tze_A 305 QDTIRKKIIAYAYSGGRK 322 (406)
T ss_dssp HHHHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHhhccCCCcc
Confidence 9999999999 9999865
No 20
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=1.3e-53 Score=416.33 Aligned_cols=212 Identities=24% Similarity=0.187 Sum_probs=176.1
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHH---H--HHHHHHHcCCCCC
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~-~~~~~~i~~~~~---~--~~~~~lA~GlDp~ 150 (319)
+++++|+||+|||.+|||||++++..|..+|.|++++|+|||+||+|+ +.+++++.++.. + +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999998888777779999999999999997 677777655443 2 3345799999999
Q ss_pred CcEEEEcccch---hhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcch
Q 020977 151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (319)
Q Consensus 151 k~~if~QSd~~---~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~ 227 (319)
++.||+||+|+ ++.++.|.++|.+++.+++|+.. ...+. .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~---~v~~~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA---EVVKQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT---TTSCC-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh---hhhcc-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999996 67788899999999999988632 11112 2568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020977 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 228 ~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
+|++++||++++|+ ++.|..++. ++||+| +| +|||||.+ +++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-dG-~KMSKS~~--ns~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMN---PMVPGL-TG-SKMSSSEE--ESKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCS-SC-C---------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---CccCCC-Cc-ccccCCCC--CCeEeccCCHHHHHHH
Confidence 99999999999997 345777776 679999 67 79999997 4689999999999999
Q ss_pred hhccccCCCC
Q 020977 308 FRRFLTFLMN 317 (319)
Q Consensus 308 I~~A~Td~~~ 317 (319)
||+|+|||.+
T Consensus 245 i~~A~td~~~ 254 (372)
T 1n3l_A 245 LKKAFCEPGN 254 (372)
T ss_dssp HHTCCCCTTC
T ss_pred HHHccCCCCC
Confidence 9999999976
No 21
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=1.6e-53 Score=407.22 Aligned_cols=204 Identities=23% Similarity=0.275 Sum_probs=181.1
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 020977 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~ 153 (319)
.+++++|+||+|||.+|||| ++++.+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+| ++
T Consensus 26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~ 101 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK 101 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence 34789999999999999999 778999999998 79999999999999985 48999999999999999999998 78
Q ss_pred EEEcccchhhhHHHHH----HhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHH
Q 020977 154 VFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (319)
Q Consensus 154 if~QSd~~~~~el~w~----L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~h 229 (319)
|++||+|+++ +.+|. ++|.+++++|.|+.+|+++. . ++.++|+|+||+||||||++|++|+||||.||++|
T Consensus 102 ~~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~---~-~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~ 176 (314)
T 2zp1_A 102 YVYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE---D-ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKI 176 (314)
T ss_dssp EEEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC---C-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred EEECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc---c-CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHH
Confidence 9999999866 45555 99999999999999987542 2 22499999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020977 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 leLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
++|+|++++ . +|..+.. ++||+| +|.+||||| + +|+|+|+|+|++|++|||
T Consensus 177 ~~l~R~i~~--~--------------------~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~~i~~KI~ 227 (314)
T 2zp1_A 177 HMLARELLP--K--------------------KVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPEEIRAKIK 227 (314)
T ss_dssp HHHHHHHSS--S--------------------CCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHHHHHHHHH
T ss_pred HHHHHHhcC--C--------------------CcEEeec---cccccC-CcccccCCC-C--cceecCCCCHHHHHHHHH
Confidence 999999875 1 2555554 779999 587899999 4 689999999999999999
Q ss_pred ccccCCCC
Q 020977 310 RFLTFLMN 317 (319)
Q Consensus 310 ~A~Td~~~ 317 (319)
+|+||+.+
T Consensus 228 ~a~td~~~ 235 (314)
T 2zp1_A 228 KAYCPAGV 235 (314)
T ss_dssp HSCCCTTC
T ss_pred hCCCCCCC
Confidence 99999963
No 22
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=2.5e-53 Score=407.34 Aligned_cols=207 Identities=15% Similarity=0.171 Sum_probs=183.9
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHH---HHHHHH
Q 020977 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAAI 141 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~i~~~~---~~~~~~ 141 (319)
+++++|+||+|||. +|||||++ +.+|++||+ |++++|+|||+||+|+ |. +++++++|+ ++.++.
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~ 110 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAP 110 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999 99999995 789999998 7999999999999998 43 899999999 778888
Q ss_pred HHHcCCCCCCcEEEEcccchhh-hHHHHH--HhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhcc---
Q 020977 142 YLACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (319)
Q Consensus 142 ~lA~GlDp~k~~if~QSd~~~~-~el~w~--L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~--- 215 (319)
|+|+|+||+|++||.||+|+.+ .++.|+ +++.++++++.|+.++|++... ..+++++|+|+||+||||||++|
T Consensus 111 ~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~-~~~~is~g~f~YP~LQaaDil~l~~~ 189 (322)
T 2yxn_A 111 FLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNR-EDQGISFTEFSYNLLQGYDFACLNKQ 189 (322)
T ss_dssp GSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHC-TTCCCCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhcc-CCCCccchhhhHHHHHHHHHHHHhcc
Confidence 8999999999999999999764 777787 8999999999999999876542 12568999999999999999999
Q ss_pred -CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe
Q 020977 216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (319)
Q Consensus 216 -~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~ 294 (319)
++|+++||.||++|++++||+|+|||+. .|..+.. ++||++ || +|||||.+ |+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~n~~------------------~~~~l~~---pll~gl-dG-~KMSKS~~---n~ 243 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQN------------------QVFGLTV---PLITKA-DG-TKFGKTEG---GA 243 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTEETT---EE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHhCCC------------------Cceeecc---CccCCC-Cc-ccccCCCC---Ce
Confidence 9999999999999999999999999941 2444444 679998 78 79999985 69
Q ss_pred eecCC---CHHHHHHhhhcc
Q 020977 295 INLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 295 I~L~D---spe~I~kKI~~A 311 (319)
|+|+| +|+++++||+++
T Consensus 244 I~L~d~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 244 VWLDPKKTSPYKFYQFWINT 263 (322)
T ss_dssp CBSSTTTSCHHHHHHHHHTC
T ss_pred eeccCCCCCHHHHHHHHhCC
Confidence 99999 999999999997
No 23
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-53 Score=414.96 Aligned_cols=213 Identities=22% Similarity=0.173 Sum_probs=175.9
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CC-CHHHHHHHH----HHHHHHHHHcCCCCC
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~-~~-~~~~i~~~~----~~~~~~~lA~GlDp~ 150 (319)
+++++|+||+|||.+|||||++++..|..+|.|++++|+|+|+||+|+ +. ..+.++.++ ..+.+.|+|+|+||+
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999999988889999999999999997 44 445555554 345557889999999
Q ss_pred CcEEEEcccc---hhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcch
Q 020977 151 KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (319)
Q Consensus 151 k~~if~QSd~---~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~ 227 (319)
++.||+||+| .++.++.|.++|++++++++|+.+.+ .+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~ 193 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQR 193 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred HcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCEEecCccHH
Confidence 9999999999 56778899999999999999886422 11 2 2567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020977 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 228 ~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
+|++++||++++|| ++.|..++. ++||+| +|.+|||||++ +++|+|+|+|++|++|
T Consensus 194 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-~~G~KMSKS~~--ns~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 194 KIFVLAEENLPSLG------------------YKKRAHLMN---PMVPGL-AQGGKMSASDP--NSKIDLLEEPKQVKKK 249 (394)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCC-C------------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---ccccCC-CCCCcCCCCCC--CCEEeccCCHHHHHHH
Confidence 99999999999998 345888876 679999 53389999997 4679999999999999
Q ss_pred hhccccCCCC
Q 020977 308 FRRFLTFLMN 317 (319)
Q Consensus 308 I~~A~Td~~~ 317 (319)
||+|+|||.+
T Consensus 250 I~ka~Td~~~ 259 (394)
T 2dlc_X 250 INSAFCSPGN 259 (394)
T ss_dssp HHHSCCCTTC
T ss_pred HHHhcCCCCC
Confidence 9999999965
No 24
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=2.7e-52 Score=413.95 Aligned_cols=206 Identities=17% Similarity=0.251 Sum_probs=174.7
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 020977 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~--g~~~~ilIaDlhA~t~~--~~~~~i~~~~~~~~~~~lA~GlDp~ 150 (319)
+++++|+||+|| |.+|||||++++ .+| ||+ |+.++|+|||+||++++ .+++.+++++++++++|+|+|+||+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~l~~--lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVFTKW--LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHHHHH--HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 478999999999 899999999976 566 886 78899999999998873 5889999999999999999999999
Q ss_pred CcEEEEcccch--hhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhc-----------cC
Q 020977 151 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ 216 (319)
Q Consensus 151 k~~if~QSd~~--~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~-----------~~ 216 (319)
|++||+||+|+ .+.++.|. ++||++++++.++++ .+++++|+|+||+|||||||+ ++
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~ 249 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT 249 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred ceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence 99999999997 56676663 568888888887764 467899999999999999999 57
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020977 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~ 296 (319)
+++||||.||++|++++||+|+||| +++|+.+.+ ++||||+++++|||||.+ +++|+
T Consensus 250 ~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~--nsaI~ 306 (432)
T 2ip1_A 250 PCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDD--TTAIF 306 (432)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CG--GGCCB
T ss_pred ceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCC--CCeEe
Confidence 9999999999999999999999998 346877665 789999443479999996 36999
Q ss_pred cCCCHHHHHHhhhc-cccCCC
Q 020977 297 LLDPKDVSHKFFRR-FLTFLM 316 (319)
Q Consensus 297 L~Dspe~I~kKI~~-A~Td~~ 316 (319)
|+|+|++|++||++ |+||+.
T Consensus 307 L~d~p~~i~~KI~~yA~t~~~ 327 (432)
T 2ip1_A 307 MTDTPKQIQKKINKYAFSGGQ 327 (432)
T ss_dssp TTCCHHHHHHHHHHHSCCCSC
T ss_pred ccCCHHHHHHHhhhhcccCCc
Confidence 99999999999999 999973
No 25
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=3.6e-52 Score=413.28 Aligned_cols=206 Identities=20% Similarity=0.286 Sum_probs=181.4
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020977 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~--g~~~~ilIaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k 151 (319)
+++++|+||+|| |.||||||++++ .+| ||+ |+.++|+|||+||++++ .+++++++|+++++++|+|+|+||+|
T Consensus 107 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 184 (437)
T 1r6u_A 107 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 184 (437)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 578999999999 899999999976 566 786 78999999999999985 68999999999999999999999999
Q ss_pred cEEEEcccchh----hhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhc-----------c
Q 020977 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (319)
Q Consensus 152 ~~if~QSd~~~----~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~-----------~ 215 (319)
++||.||+|++ +.++.| +|+||++++++.++++ .+++++|+|+||+||||||++ +
T Consensus 185 t~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 255 (437)
T 1r6u_A 185 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 255 (437)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccC
Confidence 99999999975 444443 5678888888887765 467899999999999999999 7
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020977 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I 295 (319)
++|+||||.||++|++++||+|+||| +++|..+.+ ++||||+++.+|||||.+ +++|
T Consensus 256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gLdG~~~KMSKS~~--nsaI 312 (437)
T 1r6u_A 256 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDP--NSSI 312 (437)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSS--SSCC
T ss_pred CceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCCCCCccccCCCCC--CCee
Confidence 78999999999999999999999998 346887665 789999433479999997 4699
Q ss_pred ecCCCHHHHHHhhhc-cccCCC
Q 020977 296 NLLDPKDVSHKFFRR-FLTFLM 316 (319)
Q Consensus 296 ~L~Dspe~I~kKI~~-A~Td~~ 316 (319)
+|+|+|++|++||++ |+||+.
T Consensus 313 ~L~D~p~~I~kKI~~ya~td~~ 334 (437)
T 1r6u_A 313 FLTDTAKQIKTKVNKHAFSGGR 334 (437)
T ss_dssp BTTCCHHHHHHHHHHTSCCCBC
T ss_pred eccCCHHHHHHHhhccccCCCc
Confidence 999999999999999 999983
No 26
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.7e-52 Score=413.87 Aligned_cols=208 Identities=24% Similarity=0.311 Sum_probs=180.4
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 020977 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~--g~~~~ilIaDlhA~t~~--~~~~~i~~~~~~~~~~~lA~GlDp~ 150 (319)
+++++|+||+|| |.+|||||++++ .+| ||+ ++.++|+|+|+|+++.+ .+++++++++++++++|+|+|+||+
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPD 167 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 578999999999 789999999987 777 887 56789999999999863 6999999999999999999999999
Q ss_pred CcEEEEcccchh---hhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCC----------
Q 020977 151 KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS---------- 217 (319)
Q Consensus 151 k~~if~QSd~~~---~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~a---------- 217 (319)
|++||+||+|++ +.++.|.+++.++++++.+...|+ +++++|+|+||+||||||+++..
T Consensus 168 kt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~ 239 (451)
T 3foc_A 168 KTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPL 239 (451)
T ss_dssp GEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBC
T ss_pred ceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCCCCcccccc
Confidence 999999999965 567778888888888877765432 56899999999999999984433
Q ss_pred --------------------------------C-----------------EEEecCcchHHHHHHHHHHHHhhhhhCCcc
Q 020977 218 --------------------------------D-----------------FVPVGEDQKQHLELTRELAERVNYLYGGRK 248 (319)
Q Consensus 218 --------------------------------d-----------------lvpvG~DQ~~hleLaRdia~r~n~~~g~~~ 248 (319)
| +||||+||+||+||+||+|++||
T Consensus 240 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------- 312 (451)
T 3foc_A 240 PVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------- 312 (451)
T ss_dssp C-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT-------
T ss_pred ccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC-------
Confidence 3 99999999999999999999999
Q ss_pred ccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhc-cccCCCC
Q 020977 249 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 249 ~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~-A~Td~~~ 317 (319)
+++|..+.+ ++||||+++++|||||.+ +|+|+|+|+|++|++|||+ |+||+..
T Consensus 313 -----------~~~p~~~~~---~~l~gLdG~~~KMSKS~~--ns~I~l~D~p~~I~kKI~k~A~Td~~~ 366 (451)
T 3foc_A 313 -----------HPKNAYLLG---KFLPGLQGSGTKMSASDP--NSAIYLTDTPAQIKNKINRYAFSGGRD 366 (451)
T ss_dssp -----------SCCCEEEEE---CCCCBTTBTTCCCCTTCG--GGSCBTTCCHHHHHHHHHHHSCCCSCS
T ss_pred -----------CCCCeeecC---CcccCCCCCCCccCCCCC--CCeeeecCCHHHHHHHHhhhccCCCCc
Confidence 345776654 789999544579999997 4799999999999999999 9999753
No 27
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=5.9e-52 Score=407.17 Aligned_cols=207 Identities=19% Similarity=0.265 Sum_probs=167.6
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 020977 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~--g~~~~ilIaDlhA~t~--~~~~~~i~~~~~~~~~~~lA~GlDp~ 150 (319)
+++++|+|++|| |.+|||||++++ .+| ||+ ++.++|+|||+|+++. ..+++++++++++++++|+|+|+||+
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~ 150 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPE 150 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 478999999999 679999999987 677 888 5678999999999665 46999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhc-------c-C---CC
Q 020977 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-------Y-Q---SD 218 (319)
Q Consensus 151 k~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~-------~-~---ad 218 (319)
|++||.||+|.+. + +..+.+|.|+.+++++.++.+ .+++++|+|+||+||||||+. + + ++
T Consensus 151 kt~i~~ns~~~~~---~-----~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~ 222 (393)
T 3hv0_A 151 LTFIFTNLEYIAE---L-----YPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHC 222 (393)
T ss_dssp TEEEEEHHHHHHH---H-----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCE
T ss_pred ceEEEECCHHHHH---H-----HHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCce
Confidence 9999999999752 1 223457778888888877765 467999999999999999963 2 3 47
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-CcCCCCCCCCCCeeec
Q 020977 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINL 297 (319)
Q Consensus 219 lvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~-~KMSKS~p~~~s~I~L 297 (319)
+||||.||++|++++||+|+||| +++|..+.+ ++|||| +|. +|||||.+ +++|+|
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--nsaI~L 278 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSL-QGSQTKMSASVQ--NSSIFV 278 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC----------------CCCCBT
T ss_pred ecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCeEec
Confidence 89999999999999999999998 446777765 779999 554 79999997 479999
Q ss_pred CCCHHHHHHhhhc-cccCCCC
Q 020977 298 LDPKDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 298 ~Dspe~I~kKI~~-A~Td~~~ 317 (319)
+|+|++|++|||+ |+||+..
T Consensus 279 ~D~p~~i~kKI~k~A~td~~~ 299 (393)
T 3hv0_A 279 NDNEESIRNKIMKYAFSGGQA 299 (393)
T ss_dssp TCCHHHHHHHHHHHSCCCSCS
T ss_pred cCCHHHHHHHHHhhccCCCCc
Confidence 9999999999999 9999743
No 28
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=6.8e-52 Score=406.96 Aligned_cols=208 Identities=18% Similarity=0.237 Sum_probs=163.9
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 020977 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 76 ~~~~~i~tGi~PTG-~lHLGnylg~-i~~~~~lQ~--g~~~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~ 150 (319)
.+++++|+|++||| .+|||||+++ +.+| ||+ ++.++|+|+|+|++++ +.+++++++++++++++|+|+|+||+
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 153 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPE 153 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 35889999999999 6999999997 4677 887 5778889999987765 67999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhh--------hhhccC----C
Q 020977 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----S 217 (319)
Q Consensus 151 k~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAA--------DIl~~~----a 217 (319)
|++||.||+|.+ .|. ..+.+|.|+.+++++.++.+ .+++++|+|+||+|||| ||+.++ +
T Consensus 154 kt~i~~ns~~~~----~~~----~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~ 225 (395)
T 3i05_A 154 LTFIFRDFDYMG----CMY----RTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVF 225 (395)
T ss_dssp SEEEEEHHHHTT----TSH----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCE
T ss_pred ceEEEEcCHHHH----HHH----HHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCc
Confidence 999999999975 121 34567889999999888765 46799999999999999 677788 9
Q ss_pred CEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeec
Q 020977 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 218 dlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L 297 (319)
|+||||.||++|++++||+|+|||+ ++|..+.+ ++||||+++++||||| + +|+|+|
T Consensus 226 ~lvp~G~DQ~~~i~l~Rdla~r~~~------------------~~p~~l~~---~~l~gLdG~~~KMSKS-~--~~~I~L 281 (395)
T 3i05_A 226 CLIPQAIDQDPYFRLTRDIAPRLGY------------------LKPAVIHS---KFFPGLSGPKGKMSSS-S--GTAVLL 281 (395)
T ss_dssp EEEEEEGGGHHHHHHHHHTHHHHTC------------------CCCEEEEE---CCCCCC----------------CCBT
T ss_pred eEEEeccchHHHHHHHHHHHHHcCC------------------CCceeecc---ccccCCCCCcccCCCC-C--CCcccC
Confidence 9999999999999999999999983 35766664 7899994334799999 4 699999
Q ss_pred CCCHHHHHHhhhc-cccCCCC
Q 020977 298 LDPKDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 298 ~Dspe~I~kKI~~-A~Td~~~ 317 (319)
+|+|++|++|||+ |+||+..
T Consensus 282 ~D~p~~i~kKI~k~A~td~~~ 302 (395)
T 3i05_A 282 TDTEKMVKDKINKHAFSGGGA 302 (395)
T ss_dssp TCCHHHHHHHHC---------
T ss_pred CCCHHHHHHHHHhhccCCCcc
Confidence 9999999999999 9999754
No 29
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.8e-51 Score=412.54 Aligned_cols=205 Identities=21% Similarity=0.299 Sum_probs=179.9
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020977 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-~~~~~lQ~--g~~~~ilIaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~k 151 (319)
+++++|+||+|| |.||||||++++ .+| ||+ |+.++|+|||+|++++ ..+++++++|+++++++|+|+|+||+|
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 231 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 231 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 478999999999 899999999987 677 786 7899999999999998 468999999999999999999999999
Q ss_pred cEEEEcccchh----hhHHHHHHhccCCHHHHhchhchHHHHHhhC-CCCcccccccchHHHhhhhhc-----------c
Q 020977 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (319)
Q Consensus 152 ~~if~QSd~~~----~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~-----------~ 215 (319)
++||+||+|++ +.++.| +|+|+++++++.++++ .+++++|+|+||+||||||++ +
T Consensus 232 ~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 302 (477)
T 1r6t_A 232 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 302 (477)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccC
Confidence 99999999985 555554 5667777777776654 457899999999999999999 5
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC-CCcCCCCCCCCCCe
Q 020977 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKMSKSAPSDQSR 294 (319)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg-~~KMSKS~p~~~s~ 294 (319)
++|+||||.||++|++++||+|+||| +++|..+.+ ++|||| +| .+|||||.+ +++
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gL-dG~~~KMSKS~~--nsa 358 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPAL-QGAQTKMSASDP--NSS 358 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEET-TEEEEECCTTST--TCC
T ss_pred CceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCC-CCCccccCCCCC--CCc
Confidence 78999999999999999999999998 346887665 789999 55 479999997 469
Q ss_pred eecCCCHHHHHHhhhc-cccCCC
Q 020977 295 INLLDPKDVSHKFFRR-FLTFLM 316 (319)
Q Consensus 295 I~L~Dspe~I~kKI~~-A~Td~~ 316 (319)
|+|+|+|++|++||++ |+||+.
T Consensus 359 I~L~d~p~~i~kKi~~yA~t~~~ 381 (477)
T 1r6t_A 359 IFLTDTAKQIKTKVNKHAFSGGR 381 (477)
T ss_dssp CBTTCCHHHHHHHHHHHSCCCSC
T ss_pred eeecCCHHHHHHHhccccccCCc
Confidence 9999999999999999 999983
No 30
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.5e-51 Score=405.66 Aligned_cols=206 Identities=15% Similarity=0.155 Sum_probs=182.7
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C--------CCHHHHHHHHHHH---HHHH
Q 020977 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAIY 142 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~--------~~~~~i~~~~~~~---~~~~ 142 (319)
+++++|+||+|||+ +||||++ .+.+|++||+ |++++|+|||+||+++ | .+++++++|++++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999996 9999966 5789999999 7999999999999998 5 6789999999766 6678
Q ss_pred HHcCCCCCCcEEEEcccchhh-hHHHHH--HhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhcc----
Q 020977 143 LACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (319)
Q Consensus 143 lA~GlDp~k~~if~QSd~~~~-~el~w~--L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~---- 215 (319)
+++|+||+|++||+||+|+++ .++.|+ +++.+++++|.|+.+||++. ..+++++|+|+||+||||||++|
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~---~~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL---AGEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT---STTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh---cCCCcchHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999999874 588888 89999999999999999765 23578999999999999999999
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020977 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I 295 (319)
++|+||||.||++|++++||+|+|||+. .|..+.. ++||++ || +|||||.+ +++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~l~~---plL~~l-dG-~KMSKS~~--nsaI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGA------------------TVHALTV---PLVTAA-DG-TKFGKSTG--GGSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTBCSS--SCBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCC------------------Ccccccc---ccccCC-Cc-CcCCCCCC--CCeE
Confidence 9999999999999999999999999942 2334443 679998 88 79999986 3599
Q ss_pred ecCC---CHHHHHHhhhcc
Q 020977 296 NLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 296 ~L~D---spe~I~kKI~~A 311 (319)
+|+| +|+++++||+++
T Consensus 242 ~L~d~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNT 260 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTC
T ss_pred EccCCCCCHHHHHHHHhcC
Confidence 9999 999999999996
No 31
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.1e-50 Score=402.46 Aligned_cols=210 Identities=20% Similarity=0.217 Sum_probs=173.9
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHH
Q 020977 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~---------~~~~~i~~~~~~~~~~~l 143 (319)
.+++++|+||+|||. +|||||++ +.+|++||+ |++++|+|||+||+++ | .+++++++|+.++.+.+.
T Consensus 35 ~~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~ 113 (432)
T 1h3f_A 35 GRPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG 113 (432)
T ss_dssp CSCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT
T ss_pred CCCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence 357899999999996 99999995 899999999 7999999999999998 3 246888888877777654
Q ss_pred HcCCC--CCCcEEEEcccchhhhHHHHHH--hccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCE
Q 020977 144 ACGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 219 (319)
Q Consensus 144 A~GlD--p~k~~if~QSd~~~~~el~w~L--~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adl 219 (319)
+|+| |+|++||+||+|.++..+.|++ ++.++++++.+..+|+.+... .+++++|+|+||+||||||++|++|+
T Consensus 114 -~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l 190 (432)
T 1h3f_A 114 -KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADV 190 (432)
T ss_dssp -TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSE
T ss_pred -HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccE
Confidence 8999 9999999999998876666665 899999998888899876543 35789999999999999999999999
Q ss_pred EEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020977 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 220 vpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D 299 (319)
||||.||++|++++||+++|||.. .|..+.. ++||++ ||.+|||||.+ |+|+|+|
T Consensus 191 ~~gG~DQ~~ni~l~rdlarr~~~~------------------~~~~lt~---pll~gl-dG~~KMSKS~~---n~I~L~d 245 (432)
T 1h3f_A 191 EMGGTDQRFNLLVGREVQRAYGQS------------------PQVCFLM---PLLVGL-DGREKMSKSLD---NYIGLTE 245 (432)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTTCC------------------CCEEEEE---CCCBCT-TSSSBCCGGGT---CCCBTTS
T ss_pred EEechHHHHHHHHHHHHHHHhCCC------------------CceEeec---ccccCC-CCccccCcCCC---CeeCCCC
Confidence 999999999999999999999832 1333433 679998 88779999984 6999999
Q ss_pred CHHHHHHhhhccccC
Q 020977 300 PKDVSHKFFRRFLTF 314 (319)
Q Consensus 300 spe~I~kKI~~A~Td 314 (319)
+|++|++||+++.+|
T Consensus 246 sp~~i~~Ki~~~~d~ 260 (432)
T 1h3f_A 246 PPEAMFKKLMRVPDP 260 (432)
T ss_dssp CHHHHHHHHHTSCGG
T ss_pred CHHHHHHHHhCCCcc
Confidence 999999999998765
No 32
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=6.5e-51 Score=395.42 Aligned_cols=205 Identities=21% Similarity=0.192 Sum_probs=166.8
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 020977 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +||||++ .+.+|++||+ |++++|+|||+||+|+ |. +++++++|+++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 45899999999997 9999965 6889999999 7999999999999998 42 689999999999999999
Q ss_pred cCCCCCC-----------cEEEEcccchhhhHHHHHH---hccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhh
Q 020977 145 CGIDNSK-----------ASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 210 (319)
Q Consensus 145 ~GlDp~k-----------~~if~QSd~~~~~el~w~L---~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAA 210 (319)
+ +||++ ++||+||+|..+.++.|++ ++.+++++|.++.+||++... ++++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 88854 9999999998776667765 458999999999988865432 35789999999999999
Q ss_pred hhhcc----CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 020977 211 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (319)
Q Consensus 211 DIl~~----~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSK 286 (319)
||++| ++|+||||.||++|++++||+|+|||+. .|..+.. ++||++ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~------------------~~~~l~~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGE------------------DVFGITV---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSC------------------CCEEEEE---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCC------------------Ccccccc---ccccCC-Cc-ccccC
Confidence 99999 9999999999999999999999999941 1333333 568898 78 79999
Q ss_pred CCCCCCCeeecCC---CHHHHHHhhhcc
Q 020977 287 SAPSDQSRINLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 287 S~p~~~s~I~L~D---spe~I~kKI~~A 311 (319)
|. +|+|+|+| +|++|++||+++
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQ 282 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTC
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcC
Confidence 96 58999999 999999999996
No 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=3.4e-49 Score=390.70 Aligned_cols=203 Identities=16% Similarity=0.154 Sum_probs=182.0
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 020977 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~i~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+++ |. +++++++|++++.+++++
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999995 789999998 8999999999999998 43 899999999999999999
Q ss_pred cCCCC---CCcEEEEcccch-hhhHHHHHH--hccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhcc---
Q 020977 145 CGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (319)
Q Consensus 145 ~GlDp---~k~~if~QSd~~-~~~el~w~L--~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~--- 215 (319)
+ +|| +|++||.||+|+ ++.++.|+. ++.+++++|.++.+||++. + +++++|+|+||+||||||++|
T Consensus 110 ~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~~ 184 (420)
T 1jil_A 110 I-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNRE 184 (420)
T ss_dssp H-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 9 998 999999999997 568999985 8999999999999998654 2 578999999999999999999
Q ss_pred -CCCEEEecCcchHHHHHHHHHHHHh-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020977 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 216 -~adlvpvG~DQ~~hleLaRdia~r~-n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s 293 (319)
++|+||||.||++|++++||+|+|| |.. .|..+.. ++||++ || +|||||. +|
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~~------------------~~~~l~~---pll~~l-dG-~KMSKS~---~n 238 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMYGQT------------------DAYGLTI---PLVTKS-DG-KKFGKSE---SG 238 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHCCC------------------CCEEEEE---CCCBCT-TS-CBTTBCS---SS
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------CeeEeec---ccccCC-cc-ccccCCC---CC
Confidence 9999999999999999999999999 731 1333443 678998 88 7999998 47
Q ss_pred eeecCC---CHHHHHHhhhcc
Q 020977 294 RINLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 294 ~I~L~D---spe~I~kKI~~A 311 (319)
+|+|+| +|++|++||+++
T Consensus 239 aI~L~d~~tsp~~i~~ki~~~ 259 (420)
T 1jil_A 239 AVWLDAEKTSPYEFYQFWINQ 259 (420)
T ss_dssp BCBSSTTTSCHHHHHHHHHTC
T ss_pred eEecCCCCCCHHHHHHHHhcC
Confidence 999999 999999999986
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=8.6e-50 Score=394.63 Aligned_cols=204 Identities=15% Similarity=0.181 Sum_probs=173.5
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHH---HHH
Q 020977 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AAI 141 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~i~~~~~~~---~~~ 141 (319)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+++ |. +++++++|++++ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999995 789999998 7999999999999998 43 899999999876 556
Q ss_pred HHHcCCCCCCcEEEEcccchhhhHHHHHH---hccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhcc---
Q 020977 142 YLACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (319)
Q Consensus 142 ~lA~GlDp~k~~if~QSd~~~~~el~w~L---~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~--- 215 (319)
|+++|+||+|++||.||+|+.+..+.|+| +..++++|+.+...++ ++. ++++++|+|+||+||||||++|
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k---~r~-~~~is~~ef~YPlLQaaDil~l~~~ 183 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQ---SRI-ETGISFTEFSYMMLQAYDFLRLYET 183 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHH---TTT-TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhh---hcc-CCCcchHHHHHHHHHHHHHHHHhcc
Confidence 67889999999999999998766556655 4677877766665554 333 3678999999999999999999
Q ss_pred -CCCEEEecCcchHHHHHHHHHHHHh-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020977 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 216 -~adlvpvG~DQ~~hleLaRdia~r~-n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s 293 (319)
++|+||||.||++|++++||+|+|| |.. .|..+.. ++||++ || +|||||. +|
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~------------------~~~~lt~---pll~~l-dG-~KMSKS~---~n 237 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTKGEA------------------RAFGLTI---PLVTKA-DG-TKFGKTE---SG 237 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------Ceeeccc---ccccCC-Cc-ccccCCC---CC
Confidence 9999999999999999999999999 731 1333433 668898 88 7999997 47
Q ss_pred eeecCC---CHHHHHHhhhcc
Q 020977 294 RINLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 294 ~I~L~D---spe~I~kKI~~A 311 (319)
+|+|+| +|+++++||+++
T Consensus 238 aI~L~d~~tsp~~i~qki~~~ 258 (419)
T 2ts1_A 238 TIWLDKEKTSPYEFYQFWINT 258 (419)
T ss_dssp CCBSSTTTSCHHHHHHHHHTC
T ss_pred eEecCCCCCCHHHHHHHHhcC
Confidence 999999 999999999995
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.3e-48 Score=383.38 Aligned_cols=221 Identities=18% Similarity=0.134 Sum_probs=181.0
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 020977 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~-~---------~~~~~i~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +|||||++ +.+|++||+ |++++|+|||+||+|+ | .+++++++|++++.+++++
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHH
Confidence 46799999999999 99999995 789999999 8999999999999998 4 2778899999999888888
Q ss_pred cC-----------CC---CCCcEEEEcccc-hhhhHHHHH--HhccCCHHHHhchhchHHHHHhhCCCCcccccccchHH
Q 020977 145 CG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVL 207 (319)
Q Consensus 145 ~G-----------lD---p~k~~if~QSd~-~~~~el~w~--L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~L 207 (319)
+| +| |++++||.||+| +++.++.|+ +++.++++++.+..+||.+.. ..+++++|+|+||+|
T Consensus 142 ~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~--~~~~is~gef~YPlL 219 (392)
T 1y42_X 142 LWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMT--QGDGVSFAEFTYPIM 219 (392)
T ss_dssp HHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTS--SSSCCCHHHHHHHHH
T ss_pred HhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhc--CCCCcccHHHHHHHH
Confidence 65 45 789999999997 667788898 899999998766667765332 135789999999999
Q ss_pred Hhhhhhcc----CCCEEEecCcchHHHHHHHHHHHHhhhhhCC--c---cccccCCCCCccccCCccccCCCCcccccCC
Q 020977 208 MASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG--R---KWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (319)
Q Consensus 208 QAADIl~~----~adlvpvG~DQ~~hleLaRdia~r~n~~~g~--~---~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~ 278 (319)
|||||+++ ++|+||||.||++|++++||+|+|||+.|+. + ..++++ ++.|..+.. ++||++
T Consensus 220 QAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l- 289 (392)
T 1y42_X 220 QGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS- 289 (392)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-
T ss_pred HHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-
Confidence 99999987 6999999999999999999999999987621 0 011111 234545544 679999
Q ss_pred CCCCcCCCCCCCCCCeeecCC---CHHHHHHhhhccccCC
Q 020977 279 DGLSKMSKSAPSDQSRINLLD---PKDVSHKFFRRFLTFL 315 (319)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~D---spe~I~kKI~~A~Td~ 315 (319)
|| +|||||. +|+|+|+| +|+++++||+++ +|+
T Consensus 290 dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~-~D~ 324 (392)
T 1y42_X 290 SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRR-SDQ 324 (392)
T ss_dssp TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTC-CTT
T ss_pred ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcC-Cch
Confidence 78 7999997 58999999 999999999986 454
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=5.5e-41 Score=349.05 Aligned_cols=208 Identities=12% Similarity=0.093 Sum_probs=168.9
Q ss_pred CCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHh-c--cCcEEEEEeccceecC-C--CCHHHHHHHHHHHHHHHHHc
Q 020977 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLAC 145 (319)
Q Consensus 72 ~~~~~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ-~--g~~~~ilIaDlhA~t~-~--~~~~~i~~~~~~~~~~~lA~ 145 (319)
+++...+..++|+- |||.+||||+++.++.+.++| . |++++|+||||||+++ + .+++++++++.|++++|+|+
T Consensus 376 ~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~al 454 (690)
T 3p0j_A 376 PAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAY 454 (690)
T ss_dssp CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 33444566788888 999999999999654366654 4 7899999999999998 4 58999999999999999999
Q ss_pred CCCCCCcEEEEcccchhh-hHHHHH----HhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEE
Q 020977 146 GIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (319)
Q Consensus 146 GlDp~k~~if~QSd~~~~-~el~w~----L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlv 220 (319)
|+|| +++|++||+|+.. .+++|. ++..++++|+.+.. +.+++++|+|+||+||||||+++++|++
T Consensus 455 G~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi~ 524 (690)
T 3p0j_A 455 GLPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSHV 524 (690)
T ss_dssp TCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCEE
Confidence 9998 8999999998753 256774 67788888776542 2367899999999999999999999999
Q ss_pred EecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCC
Q 020977 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300 (319)
Q Consensus 221 pvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Ds 300 (319)
|||.||++|++|+||+++++++ |..++. .++|+|.++.+||||+.+ +|+|+|+|+
T Consensus 525 ~gG~DQ~~~~~LaRd~~~~~~~--------------------~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~D~ 579 (690)
T 3p0j_A 525 ISTSLDGHINAFAREYTKERID--------------------CVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLDDN 579 (690)
T ss_dssp EECSTTTTTTHHHHHHTTTCSE--------------------EEECCC---CSSCCSSCCCC---------CCSCBTTCC
T ss_pred ecccccHHHHHHHHHHHHhccC--------------------cccccc---cccccCCCcccccCCCCC--CCeeeccCC
Confidence 9999999999999999998542 444444 679999656556667765 699999999
Q ss_pred HHHHHHhhhccccCC
Q 020977 301 KDVSHKFFRRFLTFL 315 (319)
Q Consensus 301 pe~I~kKI~~A~Td~ 315 (319)
|++|++|||+|||+|
T Consensus 580 ~~~i~~KI~kA~c~p 594 (690)
T 3p0j_A 580 DMDIRRKIKKAYSAP 594 (690)
T ss_dssp HHHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999999998
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.32 E-value=1.5e-12 Score=123.35 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=111.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh-
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~- 163 (319)
.|||.+||||+..++.+|...+. +..+++-|.|.. +.....+....+.+++.++|+++++. +++||+..+.
T Consensus 13 sPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD------~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~~y 85 (298)
T 1nzj_A 13 SPSGELHFGSLIAALGSYLQARARQGRWLVRIEDID------PPREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHDAY 85 (298)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSC------GGGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCC------chhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHHHH
Confidence 56799999999999999988776 567777888852 11334567888999999999999974 7999996442
Q ss_pred hHHH-------HHHhccCCHHHHhchhc-hHHHHHh-----------hC-------CCCcccccccchH-HHhhhhhccC
Q 020977 164 VELM-------WLLSSATPIGWLNKMIQ-FKEKSHK-----------AG-------GENVGVALLTYPV-LMASDILLYQ 216 (319)
Q Consensus 164 ~el~-------w~L~~~~s~~~L~R~~~-~k~~~~~-----------~~-------~~~~~~g~l~YP~-LQAADIl~~~ 216 (319)
.+.. +.+.|.++-.+|++... |....+. +. -++.-.|.+.++. .+.-|.++++
T Consensus 86 ~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R 165 (298)
T 1nzj_A 86 REALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHR 165 (298)
T ss_dssp HHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEEC
T ss_pred HHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEEC
Confidence 1111 11458999998876410 0000000 00 0011234444554 4556777766
Q ss_pred CCEEEe-------------------cCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccC
Q 020977 217 SDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSL 277 (319)
Q Consensus 217 adlvpv-------------------G~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL 277 (319)
+|-.|. |.|+..+...-..+.+-|+ ++.|...+. ++|.+.
T Consensus 166 ~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~---pll~~~ 224 (298)
T 1nzj_A 166 RDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHL---PLALNP 224 (298)
T ss_dssp TTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CBCCC-
T ss_pred CCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEe---eeeECC
Confidence 555555 9999988777777777776 334666655 557776
Q ss_pred CCCCCcCCCCCCCCCCeeecCCCHHHHH
Q 020977 278 TDGLSKMSKSAPSDQSRINLLDPKDVSH 305 (319)
Q Consensus 278 ~dg~~KMSKS~p~~~s~I~L~Dspe~I~ 305 (319)
+| +||||+.-+ ..|.-.++..-+.
T Consensus 225 -~g-~KLSKR~g~--~~v~~~~~~~~~~ 248 (298)
T 1nzj_A 225 -QG-AKLSKQNHA--PALPKGDPRPVLI 248 (298)
T ss_dssp ----------------CCCSSCCHHHHH
T ss_pred -CC-CcccccCCc--cChhcCCccHHHH
Confidence 67 799999842 3354445554443
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.20 E-value=1.5e-11 Score=124.00 Aligned_cols=196 Identities=17% Similarity=0.174 Sum_probs=128.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCc-------EEEE
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA-------SVFV 156 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~-------~if~ 156 (319)
.|||.+||||+..++.+|...+. +.++++-|-|. |+ ....+....+.+++.++||++|.. .+|+
T Consensus 14 sPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt-------D~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~ 86 (498)
T 2ja2_A 14 SPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT-------DAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYR 86 (498)
T ss_dssp CSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-------CTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCee
Confidence 56799999999999999987776 55566669888 33 345677888999999999999973 5899
Q ss_pred cccchhhhHHHH--------HHhccCCHHHHhchh---------chHH---------HHHhh-CCC-----------Cc-
Q 020977 157 QSHVRAHVELMW--------LLSSATPIGWLNKMI---------QFKE---------KSHKA-GGE-----------NV- 197 (319)
Q Consensus 157 QSd~~~~~el~w--------~L~~~~s~~~L~R~~---------~~k~---------~~~~~-~~~-----------~~- 197 (319)
||+..+....+. .+.|++|-.+|+++- .|.. ..+.. .+. .+
T Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 166 (498)
T 2ja2_A 87 QSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLA 166 (498)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEE
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceE
Confidence 999755322111 145999999886542 1111 00000 000 00
Q ss_pred ----ccccccchHHHhhhhhccCCC-------------------EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 020977 198 ----GVALLTYPVLMASDILLYQSD-------------------FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (319)
Q Consensus 198 ----~~g~l~YP~LQAADIl~~~ad-------------------lvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~ 254 (319)
-.|.+.|+.-+.-|.+.+++| .|.-|.|+..+...-+.+.+.|+. +|. |
T Consensus 167 ~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~------g- 238 (498)
T 2ja2_A 167 WNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGV------A- 238 (498)
T ss_dssp EEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTS------C-
T ss_pred EEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcC------C-
Confidence 124466665566676665544 455599999999999999999965 421 0
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020977 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 255 ~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
++.|+..+. +.+.+. +| +||||++. .+.|.+ .|+.|.+-+..
T Consensus 239 -----~~~P~~~h~---plil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 239 -----ERIPKFAHL---PTVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp -----CCCCEEEEE---CCEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHT
T ss_pred -----CCCCeEEEe---eeeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHH
Confidence 345776665 457776 67 79999974 233332 46666665544
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.20 E-value=1.5e-11 Score=123.06 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=127.6
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE-------EEE
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS-------VFV 156 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~-------if~ 156 (319)
.|||.+||||+..++.+|...+. +.++++-|.|. |+ ....+....+.+++.++|++++... .|+
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~ 81 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT-------DRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYR 81 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC-------CTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCee
Confidence 57899999999999999987765 66777888887 32 2345677888999999999999742 499
Q ss_pred cccchhh-hHHHH-------HHhccCCHHHHhchh-------------chHHHHHhh--CC-----------CCc-----
Q 020977 157 QSHVRAH-VELMW-------LLSSATPIGWLNKMI-------------QFKEKSHKA--GG-----------ENV----- 197 (319)
Q Consensus 157 QSd~~~~-~el~w-------~L~~~~s~~~L~R~~-------------~~k~~~~~~--~~-----------~~~----- 197 (319)
||+..+. .+..- .+.|++|-.+|.++- +..+..+.. |. ..+
T Consensus 82 QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~ 161 (468)
T 1j09_A 82 QSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDE 161 (468)
T ss_dssp GGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEET
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEec
Confidence 9997542 22111 145899988886531 222211110 10 001
Q ss_pred ccccccchHHHhhhhhccCCCEEEe-------------------cCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCc
Q 020977 198 GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (319)
Q Consensus 198 ~~g~l~YP~LQAADIl~~~adlvpv-------------------G~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~ 258 (319)
--|.+.+|..+.-|.+.+++|..|. |.|+..|...-..+.+.|+
T Consensus 162 ~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg----------------- 224 (468)
T 1j09_A 162 LRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG----------------- 224 (468)
T ss_dssp TTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT-----------------
T ss_pred cceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC-----------------
Confidence 1245777777777888876665555 9999999999999999887
Q ss_pred cccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020977 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 259 ~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
++.|+..+. +++.+. +| +||||++.+ . .|.+ .|+.|.+-+..
T Consensus 225 -~~~p~~~h~---~li~~~-~g-~klSKR~g~--~--~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 225 -WEAPRFYHM---PLLRNP-DK-TKISKRKSH--T--SLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp -CCCCEEEEE---CCCBCT-TS-CBCCTTTSC--C--BHHHHHHTTCCHHHHHHHHHH
T ss_pred -CCCCeEEEe---eeeeCC-CC-Cccccccch--h--hHHHHHHCCCCHHHHHHHHHH
Confidence 334665554 456676 67 799999842 2 3332 57776665543
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.17 E-value=8.4e-12 Score=125.50 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=125.9
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE----
Q 020977 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS---- 153 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~---- 153 (319)
+.=-.=.|||.+||||+..++.+|...+. +.++++-|-|. |+ ....+....+.+++.++|+++|...
T Consensus 27 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG 99 (488)
T 3afh_A 27 RVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT-------DTERSSREYEQQILESLRWCGLDWDEGPDIGG 99 (488)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-------CTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred eEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC-------CcccccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 33344467899999999999999987766 66788888887 32 3455677889999999999999742
Q ss_pred ---EEEcccchhh-hHHHHH-------HhccCCHHHHhch--hchHHH--HHhhC---------C-CC-----ccccccc
Q 020977 154 ---VFVQSHVRAH-VELMWL-------LSSATPIGWLNKM--IQFKEK--SHKAG---------G-EN-----VGVALLT 203 (319)
Q Consensus 154 ---if~QSd~~~~-~el~w~-------L~~~~s~~~L~R~--~~~k~~--~~~~~---------~-~~-----~~~g~l~ 203 (319)
.|+||+..+. .+..-. +.|++|-.+|++. ..|... ....| . .. .-.|.+.
T Consensus 100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 6999997542 221111 3478777776652 001100 00000 0 00 0123333
Q ss_pred chHHHhhhhhcc-------------------CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc
Q 020977 204 YPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (319)
Q Consensus 204 YP~LQAADIl~~-------------------~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~ 264 (319)
++.-+.-|.+.+ +.+.|.-|.|+..+...-..+.+.|+ ++.|+
T Consensus 180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~ 241 (488)
T 3afh_A 180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 241 (488)
T ss_dssp EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCE
T ss_pred ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCe
Confidence 333333344433 56667779999999999999999987 34577
Q ss_pred cccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020977 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 265 ~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
..+. ++|.+. +| +||||++. .+.|.+ .|+.|.+-+..
T Consensus 242 f~H~---pli~~~-~g-~KLSKR~g----~~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 242 FMHI---PLILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp EEEE---CCEECT-TS-SBCCTTTS----CCBHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEE---eeeeCC-CC-CcccCcCC----cccHHHHHHCCCCHHHHHHHHHH
Confidence 6665 457786 67 79999984 244433 57777666554
No 41
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.03 E-value=2e-11 Score=125.32 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=123.0
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-----
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~----- 152 (319)
.++=-.=.|||.+||||+.+++.+|...+. +.++++-|.|. ++ .....+....+.+++.++|+++|..
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~--~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG 203 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGG 203 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CS--SSCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Ch--hhccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence 444444678899999999999999987665 66788888884 21 1335567778899999999999974
Q ss_pred --EEEEcccchhh-hHHHHH-------HhccCCHHHHhchh--chHH---HHH-------hhC-C-C-----Cccccccc
Q 020977 153 --SVFVQSHVRAH-VELMWL-------LSSATPIGWLNKMI--QFKE---KSH-------KAG-G-E-----NVGVALLT 203 (319)
Q Consensus 153 --~if~QSd~~~~-~el~w~-------L~~~~s~~~L~R~~--~~k~---~~~-------~~~-~-~-----~~~~g~l~ 203 (319)
..|+||+..+. .+..-. +.|++|-.+|++.. .|.. ..+ ++. . . +.-.|.+.
T Consensus 204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~ 283 (592)
T 3al0_C 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283 (592)
T ss_dssp TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence 26899997542 111111 34777766655420 0000 000 000 0 0 01123333
Q ss_pred chHHHhhhhhcc-------------------CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc
Q 020977 204 YPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (319)
Q Consensus 204 YP~LQAADIl~~-------------------~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~ 264 (319)
++.-+.-|.+.+ +.++|.-|.|+..+...-+.+.+.|+ ++.|+
T Consensus 284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~ 345 (592)
T 3al0_C 284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 345 (592)
T ss_dssp CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence 333333344333 45666669999999998888888876 33466
Q ss_pred cccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020977 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 265 ~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
..+. ++|.+. +| +||||++. .+.|.+ .|+.|.+-+..
T Consensus 346 ~~hl---pli~~~-~g-~KLSKR~g----~~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 346 FMHI---PLILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp CCEE---CCCBCT-TS-SBCCTTTC----SSBHHHHHHTTCCHHHHHHHHTT
T ss_pred EEEe---eeeeCC-CC-CcccccCC----cccHHHHHHCCCCHHHHHHHHHH
Confidence 5554 457776 67 79999984 233432 57777766654
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.03 E-value=8.9e-10 Score=110.89 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=122.0
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 020977 85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (319)
Q Consensus 85 i~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~- 162 (319)
=.|||.+||||...++.+|...+. +.++++-|.|.-. .....+.+..+.+++.++||+++. .+|+||+..+
T Consensus 8 PSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~~ 80 (492)
T 2cfo_A 8 PSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDR------ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLDL 80 (492)
T ss_dssp CCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSS------SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCc------cccchHHHHHHHHHHHHcCCCCCC-CCccccCCHHH
Confidence 357899999999999999987665 6678888988821 123466778899999999999986 4799999644
Q ss_pred hhHHHHH-------HhccCCHHHHhchh----------chHH---------HHH----------hhC-CCC--c-----c
Q 020977 163 HVELMWL-------LSSATPIGWLNKMI----------QFKE---------KSH----------KAG-GEN--V-----G 198 (319)
Q Consensus 163 ~~el~w~-------L~~~~s~~~L~R~~----------~~k~---------~~~----------~~~-~~~--~-----~ 198 (319)
+.+..-. +.|+++-.+|+.+- .|.. ..+ ++. +.. + -
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v 160 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLV 160 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETT
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecc
Confidence 2222111 34888887775421 0110 000 000 000 0 0
Q ss_pred cccccchHHHh-hhhhc------------------------cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccC
Q 020977 199 VALLTYPVLMA-SDILL------------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (319)
Q Consensus 199 ~g~l~YP~LQA-ADIl~------------------------~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~ 253 (319)
-|.+.++.-+. -|.++ .+.|+|.-|.|+..+-..-..+.+.|+
T Consensus 161 ~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg------------ 228 (492)
T 2cfo_A 161 RGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG------------ 228 (492)
T ss_dssp TEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT------------
T ss_pred eeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC------------
Confidence 12333333333 34444 456677899999999988888888876
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020977 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 254 ~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
++.|+..+. ++|.+. +| +||||++.+ +.|.+ .|+.|..-+..
T Consensus 229 ------~~~P~~~H~---plil~~-~g-~KLSKr~g~----~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 229 ------ATPPNFAHT---PLILNS-TG-QKLSKRDGV----TSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp ------CCCCEEEEE---CCEECS-SS-SBCCTTSSC----CBHHHHHHTTCCHHHHHHHHHH
T ss_pred ------CCCceEEEe---eeEECC-CC-CEecccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 334766665 457776 77 799999842 23322 56766665544
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.50 E-value=2.8e-07 Score=92.48 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=117.5
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-----
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~----- 152 (319)
.+....-.|||.+||||..+++.+|.--+. +..+++-|.|... ...+.+....+.+++.++|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~------~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDL------ERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSC------CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCc------cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 356677789999999999999999875444 5566666666521 1234566777888899999999852
Q ss_pred --EEEEcccchh-hhHHHHH-------HhccCCHHHHhchh----------chH----HH-------HH--hhCC-----
Q 020977 153 --SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI----------QFK----EK-------SH--KAGG----- 194 (319)
Q Consensus 153 --~if~QSd~~~-~~el~w~-------L~~~~s~~~L~R~~----------~~k----~~-------~~--~~~~----- 194 (319)
-.|+||+..+ +.+..-. +.|.++-.+|..+- .|. +. .+ ..|.
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 2588999533 2221111 23555544332210 000 00 00 0000
Q ss_pred ---C-----------------Cccccccc------chHHHhhhhh---ccCCCEEEecCcchHHHHHHHHHHHHhhhhhC
Q 020977 195 ---E-----------------NVGVALLT------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245 (319)
Q Consensus 195 ---~-----------------~~~~g~l~------YP~LQAADIl---~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g 245 (319)
. ...+|-+. ||..+-|+++ ..+.+.|..|.||..|...-..+.+.++
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---- 243 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---- 243 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence 0 00111111 4444444443 3578999999999999998888888876
Q ss_pred CccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020977 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 246 ~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
++.|...+. +++.+. +| +||||++.+ ..|.| .|+.|.+-+..
T Consensus 244 --------------~~~p~~~H~---plil~~-~G-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 244 --------------KAPPVFAHV---STILGP-DG-KKLSKRHGA----TSVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp --------------CCCCEEEEE---CCEECT-TS-SBCCGGGSC----CBHHHHHHHTCCHHHHHHHHHT
T ss_pred --------------CCCCeEEEE---eeEECC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 334765554 345565 67 699999842 23332 46666655544
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.42 E-value=2.9e-06 Score=85.35 Aligned_cols=198 Identities=18% Similarity=0.160 Sum_probs=114.5
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
+.+.=-.=.|||.+||||+..++.+|...+. +.+.++-|-|. |+ ....+++..+.+++.++|++++. ..|
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~i~~dl~wlGl~~d~-~~~ 96 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDT-------DVERSSQEAVDAILEGMAWLGLDYDE-GPY 96 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSE-EEE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCC-------CcccccHHHHHHHHHHHHHcCCCCCC-CCc
Confidence 3444444556799999999999999986665 55667777774 33 23456788899999999999986 479
Q ss_pred Ecccchh-hhHHHHH-------HhccCCHHHHhchhchHH----------HHHh------------------hC---CCC
Q 020977 156 VQSHVRA-HVELMWL-------LSSATPIGWLNKMIQFKE----------KSHK------------------AG---GEN 196 (319)
Q Consensus 156 ~QSd~~~-~~el~w~-------L~~~~s~~~L~R~~~~k~----------~~~~------------------~~---~~~ 196 (319)
+||+..+ +.+..-. +.|+++-.+|+.+-.-.. ..+. +. +..
T Consensus 97 ~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~ 176 (490)
T 4g6z_A 97 YQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGT 176 (490)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSE
T ss_pred ccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCc
Confidence 9999533 2221111 448888887754311000 0000 00 000
Q ss_pred cc-----ccccc----------------chHHHhh---hhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCcccccc
Q 020977 197 VG-----VALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (319)
Q Consensus 197 ~~-----~g~l~----------------YP~LQAA---DIl~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~ 252 (319)
+. -|.+. ||..+-| |=...+.+.|.-|+|...+--.-..+.+-|+
T Consensus 177 ~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG----------- 245 (490)
T 4g6z_A 177 VAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG----------- 245 (490)
T ss_dssp EEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT-----------
T ss_pred EEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC-----------
Confidence 00 01222 2222222 2223468899999999887766666677766
Q ss_pred CCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC------CCHHHHHHhhhc
Q 020977 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVSHKFFRR 310 (319)
Q Consensus 253 ~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~------Dspe~I~kKI~~ 310 (319)
++.|+..+. ++|.+- +| +||||.+. .+.|. -.|+.|.+-+..
T Consensus 246 -------~~~P~f~Hl---pLi~~~-~g-~KLSKR~g----~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 246 -------GEVPVYAHL---PTVLNE-QG-EKMSKRHG----AMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp -------CCCCEEEEE---CCEECT-TS-SBCCTTTT----CCBHHHHHHTTCCHHHHHHHHHT
T ss_pred -------CCCCeEEEe---cceeCC-CC-CcccCCCC----CcCHHHHHHCCCCHHHHHHHHHH
Confidence 456876665 446675 67 89999974 23332 267777766654
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.33 E-value=3.2e-06 Score=86.01 Aligned_cols=175 Identities=21% Similarity=0.216 Sum_probs=98.4
Q ss_pred EEEeeCC--CCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020977 81 IVSGVQP--TGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 81 i~tGi~P--TG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
+.+=|.| ||.+||||...++.+|..-+. +..+++-|-|. |+ ....+.+..+.+++.++|++++ ++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~e~~~~I~edL~wLGl~wd--~~~~ 167 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT-------DPRRVDPEAYDMIPADLEWLGVEWD--ETVI 167 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCTTHHHHHHHHHHHHTCCCS--EEEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CcccccHHHHHHHHHHHHHcCCCCC--CCcc
Confidence 4455555 599999999999988875554 56677788887 33 2334577788999999999997 6899
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHhch-----------hchHHHHH-----hhCCC--------------Ccc
Q 020977 157 QSHVRA-HVELMWL-------LSSATPIGWLNKM-----------IQFKEKSH-----KAGGE--------------NVG 198 (319)
Q Consensus 157 QSd~~~-~~el~w~-------L~~~~s~~~L~R~-----------~~~k~~~~-----~~~~~--------------~~~ 198 (319)
||+..+ +.+..-. +.|.++-.++... .+..+... ..|.+ +.+
T Consensus 168 qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~ 247 (553)
T 3aii_A 168 QSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPA 247 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGG
T ss_pred cccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCC
Confidence 999643 2222111 3477777766421 11110000 00100 001
Q ss_pred c----------------cc--ccchHHH---hhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCC
Q 020977 199 V----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257 (319)
Q Consensus 199 ~----------------g~--l~YP~LQ---AADIl~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~ 257 (319)
+ |- ..||..+ +.|.-..+.|++..|.|...+-..-.-+...++
T Consensus 248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG---------------- 311 (553)
T 3aii_A 248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG---------------- 311 (553)
T ss_dssp GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT----------------
T ss_pred CCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC----------------
Confidence 0 00 1355544 445556789999999999987766666666665
Q ss_pred ccccCCccccCCCCcccccCCCCCCcCCCCC
Q 020977 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 258 ~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~ 288 (319)
++.|...+. ++| .+ +| +|||||.
T Consensus 312 --~~~P~y~H~---~~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 --WEPPEFIHY---GRL-KM-DD-VALSTSG 334 (553)
T ss_dssp --CCCCEEECC---CCB-C---------CHH
T ss_pred --CCCCeEEEe---eEE-ec-CC-ceechhh
Confidence 234766655 456 44 67 7999996
No 46
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.24 E-value=3.7e-06 Score=84.85 Aligned_cols=174 Identities=21% Similarity=0.189 Sum_probs=108.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCc-------EEEE
Q 020977 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKA-------SVFV 156 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~-~i~~~~~~~~~~~lA~GlDp~k~-------~if~ 156 (319)
.|||.+||||...++.+|..-+. +.++++-|-|. |++ ...+....+.+++.++||++|.. ..|+
T Consensus 32 sPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~ 104 (512)
T 4gri_A 32 SPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDT-------DQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPYV 104 (512)
T ss_dssp CSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCC-------CTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCCcc
Confidence 46699999999999999975554 66777778887 332 23456667888889999999853 3579
Q ss_pred cccchhhh-HHHH-H------HhccCCHHHHhchhch-------------------HHHHHh----------hC---CCC
Q 020977 157 QSHVRAHV-ELMW-L------LSSATPIGWLNKMIQF-------------------KEKSHK----------AG---GEN 196 (319)
Q Consensus 157 QSd~~~~~-el~w-~------L~~~~s~~~L~R~~~~-------------------k~~~~~----------~~---~~~ 196 (319)
||+..+.. +..- + +.|++|-.++++...- .++... +. ..+
T Consensus 105 QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~ 184 (512)
T 4gri_A 105 QSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGD 184 (512)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred ccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCC
Confidence 99864322 1111 1 4589998777543211 111000 00 000
Q ss_pred c-----cccccc-----------------chHHHhhhh---hccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccc
Q 020977 197 V-----GVALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (319)
Q Consensus 197 ~-----~~g~l~-----------------YP~LQAADI---l~~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~ 251 (319)
+ -.|.+. ||..+=|-+ ...+.+.|.-|.|...+--.-.-+.+-|+
T Consensus 185 ~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg---------- 254 (512)
T 4gri_A 185 TSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK---------- 254 (512)
T ss_dssp EEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT----------
T ss_pred ceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC----------
Confidence 0 012222 222221111 12478999999999998888888888877
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020977 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 252 ~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p 289 (319)
++.|+..+. +.|.+- +| +|+||.+.
T Consensus 255 --------~~~P~y~H~---pli~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 255 --------WKPPIYCHL---PMVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp --------CCCCEEEEE---CCCBCT-TS-SBCCTTTS
T ss_pred --------CCCCeEEec---chhccc-cc-cccCcccc
Confidence 456887776 447675 67 79999974
No 47
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.12 E-value=4.7e-06 Score=84.80 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=65.8
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
.+.=-+=.|||.+||||...++.+|..-+. +..+++-|-|. |+ ....+....+.+++.++|++++. .+++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT-------D~~R~~~e~~~~I~edL~wLGl~wde-~~~~ 98 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT-------NPVKEDIEYVESIKNDVEWLGFHWSG-NVRY 98 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSS-SCEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CchhcCHHHHHHHHHHHHHcCCCCCC-CCee
Confidence 344445567799999999999988875554 56778888887 33 23456778889999999999964 4699
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHh
Q 020977 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (319)
Q Consensus 157 QSd~~~-~~el~w~-------L~~~~s~~~L~ 180 (319)
||+..+ +.+.+-. +.|.++-.+|.
T Consensus 99 qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 99 SSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 999643 3332222 33777776654
No 48
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.87 E-value=6.8e-05 Score=79.66 Aligned_cols=90 Identities=12% Similarity=0.068 Sum_probs=64.2
Q ss_pred EeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccc
Q 020977 83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (319)
Q Consensus 83 tGi~PTG~lHLGnylg~i~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd~ 160 (319)
-+=.|||.+||||...++.+|..-+. +..+++-|-|. |+ ....++...+.+++.++||+++. .+++||+.
T Consensus 71 FaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~e~~~~IledL~wLGl~wde-~~~~qSer 142 (851)
T 2hz7_A 71 FPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT-------NPELARQEYVDSIADDLKWLGLDWGE-HFYYASDY 142 (851)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CTTTCCHHHHHHHHHHHHHHTCCCTT-CEEEGGGG
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CcccccHHHHHHHHHHHHHcCCCCCC-CcccHhhh
Confidence 36667799999999999989876554 56777788887 22 33556778889999999999965 57999996
Q ss_pred hh-hhHHHHH-------HhccCCHHHHh
Q 020977 161 RA-HVELMWL-------LSSATPIGWLN 180 (319)
Q Consensus 161 ~~-~~el~w~-------L~~~~s~~~L~ 180 (319)
.+ +.+..-. +.|+++-.++.
T Consensus 143 ~d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 143 FDRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp HHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 43 2222211 34788777664
No 49
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.54 E-value=0.00084 Score=66.70 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=49.8
Q ss_pred ceEEEeeC--CCCcchhhhHHHHHHH--HHHHh--ccCcEEEEE-eccceecC-------CCCHH-HHHHHHHHHHHHHH
Q 020977 79 KRIVSGVQ--PTGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (319)
Q Consensus 79 ~~i~tGi~--PTG~lHLGnylg~i~~--~~~lQ--~g~~~~ilI-aDlhA~t~-------~~~~~-~i~~~~~~~~~~~l 143 (319)
..+.+|-- |||.+||||....+.. +.+++ .|++|.+.. .|-|..-. ..+++ -..++...+.+++.
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34455544 6699999999876633 33444 377776643 34333211 12343 34556778899999
Q ss_pred HcCCCCCCcEEEEccc
Q 020977 144 ACGIDNSKASVFVQSH 159 (319)
Q Consensus 144 A~GlDp~k~~if~QSd 159 (319)
++|+++| .++..++
T Consensus 86 ~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 86 FLKIEYT--KFIRTTD 99 (497)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCccCCC
Confidence 9999988 4566776
No 50
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.51 E-value=0.00051 Score=68.19 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=48.7
Q ss_pred ceEEEeeCC--CCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 020977 79 KRIVSGVQP--TGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (319)
Q Consensus 79 ~~i~tGi~P--TG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~-i~~~~~~~~~~~l 143 (319)
..+.+|--| +|.+||||....+.. +.++++ |++|.+.. .|-|..-. ..++.+ .+++...+.+++.
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345556555 799999999876633 334433 78876643 23332211 123433 3445667888999
Q ss_pred HcCCCCCCcEEEEccc
Q 020977 144 ACGIDNSKASVFVQSH 159 (319)
Q Consensus 144 A~GlDp~k~~if~QSd 159 (319)
++|+++| .++..++
T Consensus 84 ~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 84 LLGIAYD--DFIRTTE 97 (500)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCcccCC
Confidence 9999988 4566666
No 51
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.08 E-value=0.00056 Score=69.97 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=29.4
Q ss_pred ceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 020977 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~i--lIaDl 119 (319)
..-|+|--|+|++||||..+++ .-+.++.+ |++|++ -|.||
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 4457788899999999998766 33444444 788755 67777
No 52
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=96.59 E-value=0.0071 Score=60.30 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=45.4
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHH-----HHHHHHhccCcEEEEE-ecccee--cC-----CCCHHH-HHHHHHHHHHH
Q 020977 77 VKKRIV-SGVQPTGSIHLGNYLGAI-----KNWIALQNSYETLFFI-VDLHAI--TL-----PYDTQQ-LSKATRETAAI 141 (319)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGnylg~i-----~~~~~lQ~g~~~~ilI-aDlhA~--t~-----~~~~~~-i~~~~~~~~~~ 141 (319)
.++.+| +|-=|.|.+||||....+ .+|.++ .|++|.+.. .|.|.- +. ..++.+ ..+++..+.++
T Consensus 24 ~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~-~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 24 GKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRM-RGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp TEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHH-cCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344444 577777999999987765 234333 278876643 333321 00 124433 34567788899
Q ss_pred HHHcCCCCCC
Q 020977 142 YLACGIDNSK 151 (319)
Q Consensus 142 ~lA~GlDp~k 151 (319)
+.++|+.++.
T Consensus 103 ~~~LgI~~d~ 112 (462)
T 3tqo_A 103 EKALRVLSPD 112 (462)
T ss_dssp HHHHTCCCCS
T ss_pred HHHcCCCCCc
Confidence 9999998764
No 53
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=96.39 E-value=0.011 Score=59.03 Aligned_cols=39 Identities=26% Similarity=0.549 Sum_probs=27.2
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccc
Q 020977 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLH 120 (319)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~--~ilIaDlh 120 (319)
|+.--|||++|+||...++ .-+.++.+ |++| ...|.||=
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 5778899999999987765 22333443 6776 55888863
No 54
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=96.38 E-value=0.0032 Score=64.93 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=28.4
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 020977 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~i--lIaDl 119 (319)
.=|+|--|+|++||||..+++ .-+.++.+ |++|+. -|.||
T Consensus 123 ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 123 VEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp EECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred EEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 337899999999999987765 22333333 788755 67887
No 55
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=95.67 E-value=0.035 Score=57.06 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=28.0
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 020977 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (319)
Q Consensus 81 i~tGi~PTG~lHLGnylg~i--~~~~~lQ~--g~~~~i--lIaDl 119 (319)
=|+|--|+|++|+||..+++ .-+.++.+ |++|+. -|.||
T Consensus 148 e~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 148 EFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp ECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred EecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 36788999999999998766 33444444 788744 67884
No 56
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=95.38 E-value=0.069 Score=53.30 Aligned_cols=75 Identities=5% Similarity=-0.069 Sum_probs=49.1
Q ss_pred CCceEEEe-eCCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEeccc-ee--cC-----CCCHHH-HHHHHHHHHHHH
Q 020977 77 VKKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIVDLH-AI--TL-----PYDTQQ-LSKATRETAAIY 142 (319)
Q Consensus 77 ~~~~i~tG-i~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilIaDlh-A~--t~-----~~~~~~-i~~~~~~~~~~~ 142 (319)
+++.|-|. --++|.+||||.++.+.. ++++++ |++|.+.-+..| .+ .. ..++++ ..++...+.+++
T Consensus 9 k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~ 88 (542)
T 3u1f_A 9 KVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCF 88 (542)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44555555 357899999999886522 333333 899877655444 32 21 235544 456778889999
Q ss_pred HHcCCCCCC
Q 020977 143 LACGIDNSK 151 (319)
Q Consensus 143 lA~GlDp~k 151 (319)
.++|++.|.
T Consensus 89 ~~lgi~~D~ 97 (542)
T 3u1f_A 89 EQMDYSIDY 97 (542)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCccCc
Confidence 999998874
No 57
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=94.48 E-value=0.2 Score=50.46 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=48.7
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 020977 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~-i~~~~~~~~~~~l 143 (319)
+..|.++ .-|||.+||||....+.. +.++++ |++|.+.. .|.|..-. ..++++ ..+....+.+++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3344444 445599999999876633 333333 88886644 45454321 224544 4455677888999
Q ss_pred HcCCCCCCcEEEEccc
Q 020977 144 ACGIDNSKASVFVQSH 159 (319)
Q Consensus 144 A~GlDp~k~~if~QSd 159 (319)
++|++++. ++.-++
T Consensus 99 ~lgi~~d~--~~~t~~ 112 (560)
T 3h99_A 99 GFNISYDN--YHSTHS 112 (560)
T ss_dssp HTTCCCSE--EEESSS
T ss_pred HcCCCCCC--ceeCCC
Confidence 99999873 444443
No 58
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=94.36 E-value=0.074 Score=53.33 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=51.2
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHH---Hh-ccCcEEE-EEeccceecC--CC------------C-----------
Q 020977 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIA---LQ-NSYETLF-FIVDLHAITL--PY------------D----------- 127 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~i~~~~~---lQ-~g~~~~i-lIaDlhA~t~--~~------------~----------- 127 (319)
..++.+|--|||.+||||...++..++- +. .|+++.+ +-.|.|.-.. |. +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 4566679999999999999888755321 22 2677643 4355554111 00 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEccc
Q 020977 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 128 ~~~i~~~~~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
.+-..++...+.+++.++||+++ +|.||+
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 11234567788889999999886 458998
No 59
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=94.18 E-value=0.3 Score=49.37 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=51.2
Q ss_pred CCCCCCCCCceEEEe-eCCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHH
Q 020977 70 PVASSSSVKKRIVSG-VQPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKAT 135 (319)
Q Consensus 70 ~~~~~~~~~~~i~tG-i~PTG~lHLGnylg~i~--~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~-i~~~~ 135 (319)
+..++..++..|-+. .-|+|.+||||....+. -+.++++ |++|.+ .-.|.|..-. ..++++ ..++.
T Consensus 19 ~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~ 98 (564)
T 3kfl_A 19 PGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVS 98 (564)
T ss_dssp -----CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 333333334433333 35789999999987652 2444444 889865 4456665321 224544 45566
Q ss_pred HHHHHHHHHcCCCCCCcEEEEccc
Q 020977 136 RETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 136 ~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
..+.+++..+|++.| .++.-++
T Consensus 99 ~~~~~~~~~lgi~~D--~~~~t~~ 120 (564)
T 3kfl_A 99 SEFKQCFQEMNYDMN--YFIRTTN 120 (564)
T ss_dssp HHHHHHHHHTTCCCS--EEEETTS
T ss_pred HHHHHHHHHcCCCCC--ccccCCC
Confidence 788889999999988 3455554
No 60
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=93.61 E-value=0.39 Score=48.04 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=49.0
Q ss_pred ceEEEeeC--CCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 020977 79 KRIVSGVQ--PTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (319)
Q Consensus 79 ~~i~tGi~--PTG~lHLGnylg~i~~--~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~-i~~~~~~~~~~~l 143 (319)
....+|-= |+|.+||||..+++.. +.++++ |++|.+ .-.|.|..-. ..++++ ..+....+.+++.
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 105 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAE 105 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34455544 4599999999876622 334433 788865 4455554311 124444 3455677888999
Q ss_pred HcCCCCCCcEEEEccc
Q 020977 144 ACGIDNSKASVFVQSH 159 (319)
Q Consensus 144 A~GlDp~k~~if~QSd 159 (319)
++|++++ .++.-++
T Consensus 106 ~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 106 VLNSSND--DYIRTSE 119 (536)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HcCCCCC--cceeCCC
Confidence 9999988 4455554
No 61
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=92.74 E-value=0.35 Score=50.46 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=49.3
Q ss_pred CceEEEee-CCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEe-ccceecC-------CCCHHH-HHHHHHHHHHHH
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIY 142 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg-~i--~~~~~lQ~--g~~~~ilIa-DlhA~t~-------~~~~~~-i~~~~~~~~~~~ 142 (319)
++.|.+++ -|+|.+||||..+ .+ .-+.++++ |++|++..+ |-|..-. ..++.+ ..++...+.+++
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45566665 5679999999987 44 22445544 889877554 5554321 235544 455677888999
Q ss_pred HHcCCCCCC
Q 020977 143 LACGIDNSK 151 (319)
Q Consensus 143 lA~GlDp~k 151 (319)
.++|++.|.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 999999884
No 62
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=90.22 E-value=1.2 Score=44.26 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=45.1
Q ss_pred CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCCc
Q 020977 86 QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 86 ~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~-i~~~~~~~~~~~lA~GlDp~k~ 152 (319)
-|+|.+||||....+.. +.++++ |++|.++. .|-|..-. ..++.+ .+++...+.+++.++|++++
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d-- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD-- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--
Confidence 35799999998876622 334433 78886643 33332211 123433 34566788889999999887
Q ss_pred EEEEccc
Q 020977 153 SVFVQSH 159 (319)
Q Consensus 153 ~if~QSd 159 (319)
.++..++
T Consensus 100 ~~~~t~~ 106 (524)
T 2x1l_A 100 RFIRTSD 106 (524)
T ss_dssp EEEETTS
T ss_pred CCeecCC
Confidence 4566666
No 63
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=88.72 E-value=0.19 Score=50.09 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.2
Q ss_pred CCCEEEecCcchHHH
Q 020977 216 QSDFVPVGEDQKQHL 230 (319)
Q Consensus 216 ~adlvpvG~DQ~~hl 230 (319)
-+|+...|.||..++
T Consensus 278 p~d~~~~G~D~~~fh 292 (542)
T 3u1f_A 278 PADVHVIGKDILKFH 292 (542)
T ss_dssp SCSEEEEEGGGHHHH
T ss_pred cceEEEecccccccc
Confidence 368999999997754
No 64
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=88.27 E-value=1.4 Score=47.16 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=47.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHH-HHHHHHHHHHHHHH
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~-~i~~~~~~~~~~~l 143 (319)
++.+++++ -|||.+||||....+.. +.++++ |+++.+.. -|-|.+-. ..++. -..+++..+.+++.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46677776 66799999999876522 333433 78886644 45554421 12343 33456777888999
Q ss_pred HcCCCCC
Q 020977 144 ACGIDNS 150 (319)
Q Consensus 144 A~GlDp~ 150 (319)
++|+..|
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998766
No 65
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=87.45 E-value=1.3 Score=43.76 Aligned_cols=82 Identities=12% Similarity=0.011 Sum_probs=47.3
Q ss_pred CCceEEEeeCCC--CcchhhhHHHHHHH--HHHHhc--cCcEEEE--Eeccceec------CCCCHHHH-HHHHHHHHHH
Q 020977 77 VKKRIVSGVQPT--GSIHLGNYLGAIKN--WIALQN--SYETLFF--IVDLHAIT------LPYDTQQL-SKATRETAAI 141 (319)
Q Consensus 77 ~~~~i~tGi~PT--G~lHLGnylg~i~~--~~~lQ~--g~~~~il--IaDlhA~t------~~~~~~~i-~~~~~~~~~~ 141 (319)
.+.++|.. .|| |.+||||...++.. +.++.+ |++|.+. +.|+-.-+ ...++.++ .++...+.++
T Consensus 21 ~~v~~yv~-gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~ 99 (461)
T 1li5_A 21 GEVGMYVC-GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD 99 (461)
T ss_dssp TEEEEEEC-CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEEc-CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34455543 566 99999998776522 223332 7887664 34442111 01244443 4456778889
Q ss_pred HHHcCCCCCCcEEEEcccc
Q 020977 142 YLACGIDNSKASVFVQSHV 160 (319)
Q Consensus 142 ~lA~GlDp~k~~if~QSd~ 160 (319)
+.++|+.+.. .+..+|+.
T Consensus 100 ~~~LgI~~~d-~~~r~t~~ 117 (461)
T 1li5_A 100 FDALNILRPD-MEPRATHH 117 (461)
T ss_dssp HHHTTCCCCS-BCCBGGGC
T ss_pred HHHcCCCCCc-ccccccch
Confidence 9999998632 23456653
No 66
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=86.98 E-value=0.18 Score=50.11 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.4
Q ss_pred cCCCEEEecCcchHH
Q 020977 215 YQSDFVPVGEDQKQH 229 (319)
Q Consensus 215 ~~adlvpvG~DQ~~h 229 (319)
+.+|+..+|.||...
T Consensus 264 ~p~di~~~G~D~~~f 278 (524)
T 2x1l_A 264 WPADLHMIGKDIIRF 278 (524)
T ss_dssp CSCSEEEEEGGGHHH
T ss_pred CCCeEEEEeechhHh
Confidence 358999999999853
No 67
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=86.89 E-value=3.2 Score=40.16 Aligned_cols=78 Identities=15% Similarity=0.036 Sum_probs=47.2
Q ss_pred EEEeeCCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCC
Q 020977 81 IVSGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGI 147 (319)
Q Consensus 81 i~tGi~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~-i~~~~~~~~~~~lA~Gl 147 (319)
.++|-=|.|.+||||....+.. +.++++ |++|.+ .-.|.|..-. ..++.+ ..++...+.+++.++|+
T Consensus 43 y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi 122 (414)
T 3c8z_A 43 YVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRV 122 (414)
T ss_dssp EECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred EeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555599999998776522 333333 788855 4456554210 124433 34556778889999999
Q ss_pred C-CCCcEEEEcccc
Q 020977 148 D-NSKASVFVQSHV 160 (319)
Q Consensus 148 D-p~k~~if~QSd~ 160 (319)
. ++ .++..|+.
T Consensus 123 ~~~d--~~~r~t~~ 134 (414)
T 3c8z_A 123 LPPH--DYVAATDA 134 (414)
T ss_dssp CCCS--EEEEGGGC
T ss_pred CCCc--ceecccch
Confidence 8 65 34555653
No 68
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=85.83 E-value=0.3 Score=49.39 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=32.1
Q ss_pred cCCCEEEecCcchHHHHH---HHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleL---aRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~ 291 (319)
+.+|+...|.||..++.+ ++-.+ . | ++.|..++.. .++ .. +| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a--~----g--------------~~~~~~v~~h--g~v-~~-~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS--A----E--------------LPLPERLVSH--GWW-TK-DH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH--T----T--------------CCCCSCEEEE--CCE-EE-TT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh--C----C--------------CCCCcEEEEc--ccE-ee-CC-ccccccC---
Confidence 357899999999874222 22222 1 2 2234444321 334 33 67 7999998
Q ss_pred CCeeec
Q 020977 292 QSRINL 297 (319)
Q Consensus 292 ~s~I~L 297 (319)
+|.|.+
T Consensus 345 GNvV~p 350 (564)
T 3kfl_A 345 GNAFDP 350 (564)
T ss_dssp TCCCCH
T ss_pred CCCCCH
Confidence 677754
No 69
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=84.93 E-value=0.44 Score=50.10 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=34.0
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adlvpvG~DQ~~-hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s 293 (319)
+-+|+..+|.||.. |+...+-...-+ ++. .+.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHHH---cCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 56899999999965 655543222211 121 1124443321 23322 66 7999998 67
Q ss_pred eeecC
Q 020977 294 RINLL 298 (319)
Q Consensus 294 ~I~L~ 298 (319)
.|.+.
T Consensus 658 vv~p~ 662 (810)
T 1wkb_A 658 VLNFI 662 (810)
T ss_dssp CCBHH
T ss_pred cCCHH
Confidence 77653
No 70
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=84.49 E-value=5.1 Score=40.18 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=44.9
Q ss_pred CceEEE-eeCCCCcchhhhHHHHH-----HHHHHHhccCcEEEE--Eecc---------c--eecC-----CCCHHH-HH
Q 020977 78 KKRIVS-GVQPTGSIHLGNYLGAI-----KNWIALQNSYETLFF--IVDL---------H--AITL-----PYDTQQ-LS 132 (319)
Q Consensus 78 ~~~i~t-Gi~PTG~lHLGnylg~i-----~~~~~lQ~g~~~~il--IaDl---------h--A~t~-----~~~~~~-i~ 132 (319)
++++|+ |-=|.|.+||||....+ .+|.+++ |++|.+. |.|+ | .++. ..++.+ ..
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~-Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~ 120 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISE 120 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEBCSCCC-------------------CCHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHc-CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHH
Confidence 455554 43334999999987755 3343332 8998876 3444 2 2222 124544 45
Q ss_pred HHHHHHHHHHHHcCCCCCC
Q 020977 133 KATRETAAIYLACGIDNSK 151 (319)
Q Consensus 133 ~~~~~~~~~~lA~GlDp~k 151 (319)
+++..+.+++.++|+.++.
T Consensus 121 ~~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 121 FFTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 6778899999999998875
No 71
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=82.93 E-value=0.42 Score=46.46 Aligned_cols=30 Identities=27% Similarity=0.097 Sum_probs=19.3
Q ss_pred hhhhhccCCCEEEecCcchH-HHHHHHHHHH
Q 020977 209 ASDILLYQSDFVPVGEDQKQ-HLELTRELAE 238 (319)
Q Consensus 209 AADIl~~~adlvpvG~DQ~~-hleLaRdia~ 238 (319)
+...+--..|+.++|.|+.. |++...-...
T Consensus 237 ~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~ 267 (414)
T 3c8z_A 237 ALTRIGTGLDIQGGGSDLIFPHHEYSAAHAE 267 (414)
T ss_dssp HHHHTCSCEEEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHhcCCCceEEEeccccccHHHHHHHHHHH
Confidence 34444346799999999877 6665443333
No 72
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=82.32 E-value=2.2 Score=45.41 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=43.8
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceec------------C--CCCH------HH-
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAIT------------L--PYDT------QQ- 130 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t------------~--~~~~------~~- 130 (319)
++.|++|. -|||.+|+||.+..+.+ +.+++. |+++.+.. -|-|.+- + +.+. +.
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~ 114 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence 46666663 46899999999876533 444444 88887755 4666651 1 1111 11
Q ss_pred ---HHHHHHHHHHHHHHcCCCC
Q 020977 131 ---LSKATRETAAIYLACGIDN 149 (319)
Q Consensus 131 ---i~~~~~~~~~~~lA~GlDp 149 (319)
..++...+..++..+|+..
T Consensus 115 ~~~~~~~~~~~~~q~~rlG~s~ 136 (862)
T 1gax_A 115 WQWKEESGGTILKQLKRLGASA 136 (862)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 3445566777888888643
No 73
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=82.27 E-value=0.64 Score=50.07 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=33.7
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adlvpvG~DQ~~-hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s 293 (319)
+-+|+..+|.||.. |+...+-...-+ ++. .+.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCS-------------TTSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHH---cCc-------------ccccceEEEe--eEEee--CC-EEccccc---cC
Confidence 56899999999964 555443222111 221 1124443321 23332 66 7999998 67
Q ss_pred eeecC
Q 020977 294 RINLL 298 (319)
Q Consensus 294 ~I~L~ 298 (319)
.|.+.
T Consensus 658 vv~p~ 662 (967)
T 1wz2_A 658 VLNFI 662 (967)
T ss_dssp CCBHH
T ss_pred CCCHH
Confidence 77653
No 74
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=82.00 E-value=0.61 Score=46.08 Aligned_cols=66 Identities=27% Similarity=0.237 Sum_probs=35.9
Q ss_pred HhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 020977 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (319)
Q Consensus 208 QAADIl~~~adlvpvG~DQ~-~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSK 286 (319)
|+...+--..|+..+|.|+. +|++ .++|..... +|. +.|..+++. .+|. + +| +||||
T Consensus 212 m~~~~lg~~~dih~gG~Dl~fpH~~--~~~aq~~a~-~g~--------------~~~~~~~h~--g~v~-~-~G-~KMSK 269 (461)
T 1li5_A 212 MNCKQLGNHFDIHGGGSDLMFPHHE--NEIAQSTCA-HDG--------------QYVNYWMHS--GMVM-V-DR-EKMSK 269 (461)
T ss_dssp HHHHHHCSSEEEEECBGGGTTTHHH--HHHHHHHHH-SSS--------------CCEEEECCB--CCEE-E-TT-BCCCG
T ss_pred HHHHHhCCCceEEeccCccCchHHH--HHHHHHHHh-cCC--------------CCCcEEEEe--eEEE-E-CC-eEccc
Confidence 33344434678999999976 4543 344444321 231 124333331 2232 2 56 79999
Q ss_pred CCCCCCCeeecC
Q 020977 287 SAPSDQSRINLL 298 (319)
Q Consensus 287 S~p~~~s~I~L~ 298 (319)
|. +|.|.+.
T Consensus 270 S~---GN~v~~~ 278 (461)
T 1li5_A 270 SL---GNFFTVR 278 (461)
T ss_dssp GG---TCCCBHH
T ss_pred cC---CCccChh
Confidence 98 6777653
No 75
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=81.88 E-value=0.53 Score=47.01 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=12.1
Q ss_pred CCCEEEecCcchHH
Q 020977 216 QSDFVPVGEDQKQH 229 (319)
Q Consensus 216 ~adlvpvG~DQ~~h 229 (319)
.+|+...|.||...
T Consensus 276 p~dv~~~G~D~~~f 289 (536)
T 4dlp_A 276 PANAHIIGKDISRF 289 (536)
T ss_dssp SCSEEEEEGGGHHH
T ss_pred CcceEEeechHHHH
Confidence 57899999999884
No 76
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=81.60 E-value=0.74 Score=49.38 Aligned_cols=57 Identities=32% Similarity=0.337 Sum_probs=33.3
Q ss_pred ccCCCEEEecCcch---HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCC
Q 020977 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 214 ~~~adlvpvG~DQ~---~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P-~~l~~~~~~~l~gL~dg~~KMSKS~p 289 (319)
.+-+|+...|.||. .|-.+...++- + |.. | ..++. + .++... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~-~----g~~---------------Pfk~v~~-h-G~V~d~-~G-~KMSKSl- 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVAT-R----GVS---------------PYKFLLS-H-GFVMDG-EG-KKMSKSL- 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHH-H----SSC---------------SBSEEEE-E-CCEECT-TS-CCCCSSS-
T ss_pred CCCceEEEEEecccccHHHHHHHHHHHh-h----CCC---------------cccceeE-e-eeEEcC-CC-cCccccc-
Confidence 35689999999997 34444555441 1 221 2 22222 1 234432 56 7999998
Q ss_pred CCCCeeec
Q 020977 290 SDQSRINL 297 (319)
Q Consensus 290 ~~~s~I~L 297 (319)
+|.|.+
T Consensus 601 --GNvV~P 606 (917)
T 1ffy_A 601 --GNVIVP 606 (917)
T ss_dssp --SCCCCH
T ss_pred --CCcCCh
Confidence 677754
No 77
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=79.73 E-value=0.72 Score=46.32 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=11.7
Q ss_pred CCCCcCCCCCCCCCCeeec
Q 020977 279 DGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L 297 (319)
+| +|||||. +|.|.+
T Consensus 342 ~G-~KMSKS~---GNvv~p 356 (560)
T 3h99_A 342 NG-AKMSKSR---GTFIKA 356 (560)
T ss_dssp TT-EECCTTT---TCCCBH
T ss_pred CC-eeccccC---CCcCCH
Confidence 66 7999998 677754
No 78
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=79.31 E-value=3.4 Score=44.05 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=45.7
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~-~~i~~~~~~~~~~~l 143 (319)
++.+++|+ -|+|.+||||....+.. +.+++. |+++.+.. -|-|.+-. ..++ +-..++...+.+++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777773 45699999999876522 333333 78887644 34444321 1233 334556778888999
Q ss_pred HcCCCCC
Q 020977 144 ACGIDNS 150 (319)
Q Consensus 144 A~GlDp~ 150 (319)
++|+..|
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9998665
No 79
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=78.46 E-value=1 Score=47.48 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.8
Q ss_pred cCCCEEEecCcchH
Q 020977 215 YQSDFVPVGEDQKQ 228 (319)
Q Consensus 215 ~~adlvpvG~DQ~~ 228 (319)
+-+|+...|.||..
T Consensus 543 ~P~dl~~~G~D~~r 556 (821)
T 1ile_A 543 FPADFIAEGIDQTR 556 (821)
T ss_dssp SSBSBEEEEGGGGG
T ss_pred CCcccccchhhhhc
Confidence 46899999999974
No 80
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=77.09 E-value=0.76 Score=49.01 Aligned_cols=58 Identities=29% Similarity=0.372 Sum_probs=36.0
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCCcCCCCCCCCC
Q 020977 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P-~-~l~~~~~~~l~gL~dg~~KMSKS~p~~~ 292 (319)
+-+|+...|.||.. +=.+|.++..... .|. .| . .+.+ .++... +| +|||||. +
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~~-~g~---------------~Pfk~v~~h---G~vld~-~G-~KMSKSl---G 534 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYHF-MGE---------------RPFKTVLLH---GLVLDE-KG-QKMSKSK---G 534 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHHH-SSS---------------CSBSEEEEE---CCEECT-TS-CBCCTTT---T
T ss_pred CCceEEecCccccc-cHHHHHHHHHHHh-cCC---------------CcccEEEEe---eeEEcC-CC-CCccccC---C
Confidence 56899999999975 3456666655431 232 13 2 2322 334443 67 7999998 6
Q ss_pred Ceeec
Q 020977 293 SRINL 297 (319)
Q Consensus 293 s~I~L 297 (319)
|.|..
T Consensus 535 NvIdP 539 (862)
T 1gax_A 535 NVIDP 539 (862)
T ss_dssp CCCCH
T ss_pred CCCCH
Confidence 77754
No 81
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=74.91 E-value=3.3 Score=43.42 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=27.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.|..|. -|+|.+||||.+..+.+ +.+++. |++|.+.. -|.|.+
T Consensus 35 ~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred cEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 34444443 35799999999886633 344443 78887644 355544
No 82
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=72.21 E-value=0.97 Score=45.15 Aligned_cols=72 Identities=25% Similarity=0.350 Sum_probs=31.5
Q ss_pred hccCCCEEEecCcchH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCC-CCCCcCCCCC
Q 020977 213 LLYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSA 288 (319)
Q Consensus 213 l~~~adlvpvG~DQ~~---hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~-dg~~KMSKS~ 288 (319)
..+..++-++|.|+.. ......+++.. .+|. +.|..++. .+|.. . +| +|||||.
T Consensus 227 ~~l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG~--------------~~p~~~h~---~~i~~-~g~g-~KmSKs~ 284 (523)
T 1irx_A 227 SHFGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYGK--------------EAPLSLMY---EFVGI-KGQK-GKMSGSK 284 (523)
T ss_dssp HHSCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHCC--------------CCCBCCEE---CCEEE-SCC---------
T ss_pred HHcCCCCcCCCcCccCCCcchhhHHHHHHH---HhCC--------------CCCeEEEE---EEEEe-CCCC-CCCCCcC
Confidence 3345555689999887 23344666632 2342 23554544 33433 2 24 7999998
Q ss_pred CCCCCeeecCC-----CHHHHHHhhh
Q 020977 289 PSDQSRINLLD-----PKDVSHKFFR 309 (319)
Q Consensus 289 p~~~s~I~L~D-----spe~I~kKI~ 309 (319)
++.|.+.| .||.++.=+.
T Consensus 285 ---Gn~i~~~~~~~~~~pdalR~~l~ 307 (523)
T 1irx_A 285 ---GNVILLSDLYEVLEPGLVRFIYA 307 (523)
T ss_dssp ----CCCCHHHHHTTSCHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHcCHHHHHHHHH
Confidence 46664432 4555554443
No 83
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=71.36 E-value=4.7 Score=43.19 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=46.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC----------CC--CHHHHH-------
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL----------PY--DTQQLS------- 132 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~t~----------~~--~~~~i~------- 132 (319)
++.+.+|. -|+|.+||||.+..+.+ +.+++. |+++.+.. -|-|.+-. +. ++++.+
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~ 128 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHH
Confidence 56777777 57899999999886633 444444 78876644 56666531 11 233322
Q ss_pred -HHHHHHHHHHHHcCC--CCCC
Q 020977 133 -KATRETAAIYLACGI--DNSK 151 (319)
Q Consensus 133 -~~~~~~~~~~lA~Gl--Dp~k 151 (319)
++...+.+++..+|+ |.++
T Consensus 129 ~~~~~~~~~~~~rlG~~~Dwd~ 150 (917)
T 1ffy_A 129 LEQIELQKKDFRRLGVRGDFND 150 (917)
T ss_dssp HHHHHHHHHHHHTTTCCSCTTS
T ss_pred HHHHHHHHHHHHHhCeEEccCC
Confidence 334456677788898 5665
No 84
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=71.19 E-value=2.1 Score=42.95 Aligned_cols=32 Identities=22% Similarity=0.089 Sum_probs=20.4
Q ss_pred HHhhhhhccCCCEEEecCcc-hHHHHHHHHHHH
Q 020977 207 LMASDILLYQSDFVPVGEDQ-KQHLELTRELAE 238 (319)
Q Consensus 207 LQAADIl~~~adlvpvG~DQ-~~hleLaRdia~ 238 (319)
-|+...|--..|+..+|.|. .+|++--.-...
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHheneiAqs~ 276 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEIAIAE 276 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHHHHHH
Confidence 34455554567999999996 457665443333
No 85
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=65.10 E-value=2.9 Score=44.02 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=30.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020977 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.++.|. -|||.+||||.++.+.+ +.+++. |+++.+.. -|-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 56677776 68899999999876533 334443 78886644 455554
No 86
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=62.34 E-value=4.3 Score=43.29 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=19.1
Q ss_pred cCCCEEEecCcc-hHHHHHHHHHHH
Q 020977 215 YQSDFVPVGEDQ-KQHLELTRELAE 238 (319)
Q Consensus 215 ~~adlvpvG~DQ-~~hleLaRdia~ 238 (319)
+-+|+..+|.|| .-|+-.+|=+..
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~ 554 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTK 554 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHH
Confidence 569999999999 677777776654
No 87
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=59.24 E-value=5.4 Score=42.64 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=20.6
Q ss_pred ccCCCEEEecCcc-hHHHHHHHHHHHHh
Q 020977 214 LYQSDFVPVGEDQ-KQHLELTRELAERV 240 (319)
Q Consensus 214 ~~~adlvpvG~DQ-~~hleLaRdia~r~ 240 (319)
.+-+|+-.+|.|| .-|+..+|-...-+
T Consensus 541 ~~PvD~yigG~EHailHllyaRf~~~~L 568 (880)
T 4arc_A 541 WLPVDIYIGGIEHAIMHLLYFRFFHKLM 568 (880)
T ss_dssp HCSEEEEECCGGGTTTHHHHHHHHHHHH
T ss_pred cCCceEeecchhhHHHHHHHHHHHHHHH
Confidence 3578999999999 56888888554443
No 88
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=56.40 E-value=38 Score=31.06 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=58.6
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccC-cEEEEEeccceecC----CCCHHHHHHHH--------HHHHHHHH
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYL 143 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~-~~~ilIaDlhA~t~----~~~~~~i~~~~--------~~~~~~~l 143 (319)
+...++.||-|=-.-|=+.++-.+..|. +..+ +|.|+++|.++--+ ..++.+.++.+ +.+...+.
T Consensus 28 ~g~HallGISpgNsyFs~d~L~~Li~Wa--~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~ 105 (257)
T 3oqi_A 28 RRRHVLVGISPFNSRFSEDYIHRLIAWA--VREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALE 105 (257)
T ss_dssp HTCEEEEEECTTSTTCCHHHHHHHHHHH--HHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999998888999999889995 5555 58999999865533 33444333322 34556667
Q ss_pred HcCCCCCCcEEEEcccchh
Q 020977 144 ACGIDNSKASVFVQSHVRA 162 (319)
Q Consensus 144 A~GlDp~k~~if~QSd~~~ 162 (319)
++|++++ .++.=||+..
T Consensus 106 ~~g~~~~--~v~~~Sd~~~ 122 (257)
T 3oqi_A 106 AHGGNPE--DIHTFSDFAN 122 (257)
T ss_dssp HHTCCTT--CEEETTTTTT
T ss_pred HcCCCcc--cceeHHHhhc
Confidence 7799877 6777798744
No 89
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=52.45 E-value=4.7 Score=43.36 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=29.5
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020977 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnylg~i~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
.++.++.|. -|||.+|+||.+..+.+ +.+++. |+++.+.. -|-|.+
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~Gl 85 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSS
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCc
Confidence 356777776 35799999999875533 344443 78876643 344544
No 90
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=44.30 E-value=4 Score=40.44 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=6.9
Q ss_pred CCCEE------------EecCcchHHHHH
Q 020977 216 QSDFV------------PVGEDQKQHLEL 232 (319)
Q Consensus 216 ~adlv------------pvG~DQ~~hleL 232 (319)
-+|++ |||.||++|.|-
T Consensus 221 AaDil~~~~d~~~~~~vp~~~d~~~~~~~ 249 (451)
T 3foc_A 221 MLPVYSTYFDGLPFTRVPLPVGTGNEDAA 249 (451)
T ss_dssp HGGGSGGGGTTSGGGCCBCC---------
T ss_pred HHHHHHhhcCCCCccccccccccccchhh
Confidence 48998 899999999543
No 91
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=40.09 E-value=53 Score=29.89 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccC-cEEEEEeccceecC----CCCHHHHHHHH--------HHHHHHHH
Q 020977 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYL 143 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~-~~~ilIaDlhA~t~----~~~~~~i~~~~--------~~~~~~~l 143 (319)
+...++.||-|=-.-|=+.++-.+..|. +..+ ++-|+++|.+.--+ ..++.+.++.+ +.+...+.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~Wa--~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQWA--GQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHHH--HHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999998888999999889995 5554 58999999954322 34443333322 34556677
Q ss_pred HcCCCCCCcEEEEcccchh
Q 020977 144 ACGIDNSKASVFVQSHVRA 162 (319)
Q Consensus 144 A~GlDp~k~~if~QSd~~~ 162 (319)
++|.+.++..|..=||+..
T Consensus 106 ~~~~~~~~~rv~~~Sd~~~ 124 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSELQE 124 (247)
T ss_dssp HHCTTGGGEEEEEHHHHTT
T ss_pred HhCCCccCceeeeHHHhhC
Confidence 8899988877887788743
No 92
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=33.20 E-value=7.4 Score=40.44 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=18.4
Q ss_pred cCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020977 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 261 ~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~ 298 (319)
+.|..++.. .++.. +| +|||||. +|.|+..
T Consensus 327 ~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~ 356 (722)
T 1rqg_A 327 NLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVH 356 (722)
T ss_dssp CCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHH
T ss_pred CCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHH
Confidence 456555431 23322 66 7999998 6888753
No 93
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=28.33 E-value=1.6e+02 Score=23.49 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHHHHHhccC---cEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020977 98 GAIKNWIALQNSY---ETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 98 g~i~~~~~lQ~g~---~~~ilIaDlhA~t~--~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
..+..+...-..+ ...|.|.....-++ ..+++.-.+++......++..|++++++.+.
T Consensus 39 ~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~ 101 (148)
T 4erh_A 39 QALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISAR 101 (148)
T ss_dssp HHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 3455555433323 34454443322233 2355666777777777788889999886544
Done!