BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020979
         (319 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
           Molecular Insights Into N-Glycan Recognition And
           Hydrolysis
          Length = 434

 Score = 31.2 bits (69), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 43  QQLNTFLNEPPTEIPKTFGVSIPMKATFFITYTMVDGWAGIAAEIIRLVPLVIFHLKNTF 102
           Q LN   N P T +PKT G  IP      I   MV  WA   +   R  P  +F L   F
Sbjct: 306 QGLNGIKNTPITSVPKTEGADIP------IIGGMVAAWADTPS--ARYSPSRLFKLMRHF 357


>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
           Molecular Insights Into N-Glycan Recognition And
           Hydrolysis
          Length = 434

 Score = 31.2 bits (69), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 43  QQLNTFLNEPPTEIPKTFGVSIPMKATFFITYTMVDGWAGIAAEIIRLVPLVIFHLKNTF 102
           Q LN   N P T +PKT G  IP      I   MV  WA   +   R  P  +F L   F
Sbjct: 306 QGLNGIKNTPITSVPKTEGADIP------IIGGMVAAWADTPS--ARYSPSRLFKLMRHF 357


>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
           Molecular Insights Into N-Glycan Recognition And
           Hydrolysis
          Length = 454

 Score = 31.2 bits (69), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 43  QQLNTFLNEPPTEIPKTFGVSIPMKATFFITYTMVDGWAGIAAEIIRLVPLVIFHLKNTF 102
           Q LN   N P T +PKT G  IP      I   MV  WA   +   R  P  +F L   F
Sbjct: 326 QGLNGIKNTPITSVPKTEGADIP------IIGGMVAAWADTPS--ARYSPSRLFKLMRHF 377


>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
           Monosiga Brevicollis
          Length = 650

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 15/84 (17%)

Query: 244 MVKDTLERATEPNLNLRTY--LQD--AYVHPVFKGIQEQNPPAVEEEEDSSPLVATKRRN 299
           +VKD +E      L+L +Y  ++D  + V P      ++   +VEE++D     A KR N
Sbjct: 479 IVKDLMEYIATGQLDLESYPAVRDGPSVVQP------KRASKSVEEDDDGPATSARKRGN 532

Query: 300 W--NASKNESDASSKAG---SGTG 318
           W  N   N S  S+ +G   SG G
Sbjct: 533 WAKNKGNNRSLPSTPSGVAVSGNG 556


>pdb|2RLA|A Chain A, Altering The Binuclear Manganese Cluster Of Arginase
           Diminishes Thermostability And Catalytic Function
 pdb|2RLA|B Chain B, Altering The Binuclear Manganese Cluster Of Arginase
           Diminishes Thermostability And Catalytic Function
 pdb|2RLA|C Chain C, Altering The Binuclear Manganese Cluster Of Arginase
           Diminishes Thermostability And Catalytic Function
          Length = 323

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 11/49 (22%), Positives = 27/49 (55%)

Query: 25  LFILFNVFLGSIVTGTALQQLNTFLNEPPTEIPKTFGVSIPMKATFFIT 73
           L+I   ++   +++G  + ++N  L + P E+ +T   ++P+  + F T
Sbjct: 258 LYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVPLTLSCFGT 306


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,480,208
Number of Sequences: 62578
Number of extensions: 324723
Number of successful extensions: 592
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 6
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)