Query 020979
Match_columns 319
No_of_seqs 185 out of 679
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1134 Uncharacterized conser 100.0 9.7E-61 2.1E-65 494.8 25.8 295 1-297 431-727 (728)
2 COG5594 Uncharacterized integr 100.0 9.7E-54 2.1E-58 433.9 20.5 237 2-239 486-723 (827)
3 PF02714 DUF221: Domain of unk 100.0 6.1E-47 1.3E-51 360.9 21.7 199 2-201 126-325 (325)
4 PF04547 Anoctamin: Calcium-ac 98.1 0.00035 7.6E-09 70.0 20.2 188 2-202 187-398 (452)
5 KOG2513 Protein required for m 80.8 61 0.0013 34.1 14.8 81 127-208 479-564 (647)
6 PF15176 LRR19-TM: Leucine-ric 80.7 5.5 0.00012 31.9 5.8 24 170-193 8-31 (102)
7 PF02654 CobS: Cobalamin-5-pho 79.6 15 0.00032 33.7 9.3 126 103-233 83-214 (235)
8 PF09726 Macoilin: Transmembra 74.0 46 0.001 35.6 12.2 54 126-185 74-127 (697)
9 KOG3593 Predicted receptor-lik 56.9 11 0.00024 35.9 3.2 45 273-317 272-316 (355)
10 PTZ00429 beta-adaptin; Provisi 53.1 12 0.00025 40.4 3.1 9 72-80 313-321 (746)
11 PF14362 DUF4407: Domain of un 48.5 90 0.002 29.4 8.1 59 143-202 46-107 (301)
12 PF09874 DUF2101: Predicted me 46.1 1E+02 0.0022 27.9 7.4 93 134-237 48-146 (206)
13 PF15159 PIG-Y: Phosphatidylin 45.8 18 0.00038 27.3 2.2 26 137-162 43-68 (72)
14 TIGR00769 AAA ADP/ATP carrier 45.5 3.5E+02 0.0075 27.6 13.8 84 124-220 262-345 (472)
15 COG0368 CobS Cobalamin-5-phosp 44.4 2.1E+02 0.0046 26.5 9.7 125 106-233 91-218 (246)
16 PF03208 PRA1: PRA1 family pro 43.9 68 0.0015 26.9 5.9 41 124-164 40-81 (153)
17 PF07810 TMC: TMC domain; Int 42.1 49 0.0011 27.0 4.5 54 114-172 47-105 (111)
18 PF06570 DUF1129: Protein of u 42.0 2.5E+02 0.0054 24.9 10.5 19 214-232 184-202 (206)
19 TIGR00317 cobS cobalamin 5'-ph 41.3 2.2E+02 0.0048 26.1 9.3 16 217-232 204-219 (241)
20 PF12794 MscS_TM: Mechanosensi 40.4 3.5E+02 0.0076 26.2 11.6 74 172-245 185-265 (340)
21 PF01102 Glycophorin_A: Glycop 38.7 41 0.00089 27.9 3.6 29 133-161 66-94 (122)
22 KOG0054 Multidrug resistance-a 37.3 6.2E+02 0.013 29.6 13.5 36 127-162 942-977 (1381)
23 KOG2082 K+/Cl- cotransporter K 33.9 3.9E+02 0.0085 29.4 10.5 90 65-163 546-644 (1075)
24 PLN03242 diacylglycerol o-acyl 32.7 5.3E+02 0.011 25.9 12.8 57 59-117 256-313 (410)
25 PF05975 EcsB: Bacterial ABC t 31.6 5E+02 0.011 25.4 13.0 75 118-192 96-178 (386)
26 PLN02401 diacylglycerol o-acyl 31.5 5.7E+02 0.012 26.0 12.9 57 59-117 281-338 (446)
27 PF07811 TadE: TadE-like prote 30.8 84 0.0018 20.3 3.5 30 135-164 4-33 (43)
28 PF05620 DUF788: Protein of un 29.4 3.3E+02 0.0071 23.5 8.0 47 162-208 63-118 (170)
29 KOG1821 Uncharacterized conser 29.1 2.1E+02 0.0046 28.7 7.2 34 128-161 119-152 (662)
30 PF04109 APG9: Autophagy prote 28.9 73 0.0016 31.5 4.1 37 131-167 121-158 (370)
31 PRK09702 PTS system arbutin-sp 27.5 85 0.0018 27.3 3.8 33 124-165 5-37 (161)
32 KOG1286 Amino acid transporter 27.0 7.4E+02 0.016 25.8 11.8 53 141-193 401-457 (554)
33 PF05297 Herpes_LMP1: Herpesvi 26.8 21 0.00046 34.0 0.0 58 172-231 130-189 (381)
34 PF15471 TMEM171: Transmembran 26.5 23 0.0005 33.4 0.2 35 136-170 160-194 (319)
35 PF06084 Cytomega_TRL10: Cytom 25.2 89 0.0019 25.7 3.3 36 190-228 46-82 (150)
36 PF11120 DUF2636: Protein of u 24.5 89 0.0019 22.9 2.9 22 141-162 6-27 (62)
37 PF04835 Pox_A9: A9 protein co 23.5 1.1E+02 0.0023 21.8 3.0 45 159-205 4-48 (54)
38 PF11712 Vma12: Endoplasmic re 21.2 3.1E+02 0.0066 22.9 6.1 44 136-197 81-124 (142)
39 PRK00235 cobS cobalamin syntha 21.1 4.2E+02 0.0091 24.3 7.5 17 217-233 207-223 (249)
40 PF06790 UPF0259: Uncharacteri 20.6 6.9E+02 0.015 23.2 10.5 81 13-93 71-152 (248)
41 KOG0831 Acyl-CoA:diacylglycero 20.1 6.1E+02 0.013 24.7 8.4 48 145-192 36-84 (334)
No 1
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=9.7e-61 Score=494.78 Aligned_cols=295 Identities=48% Similarity=0.880 Sum_probs=273.8
Q ss_pred CccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCChHHHHHhhcCcchHHHHHHHHHHhh
Q 020979 1 MTMSKIEGFTSLSSLEKRSAGKYYLFILFNVFLGSIVTGTALQQLNTFLNEPPTEIPKTFGVSIPMKATFFITYTMVDGW 80 (319)
Q Consensus 1 ~~ls~~eG~~S~S~~e~~v~~k~f~F~v~nvflv~~l~gs~~~~l~~~~~~p~~~i~~~L~~~lP~~S~FFi~yii~~~~ 80 (319)
+++|++||++|+|++|++++.|||+|+++|+|++.+++||+++++..++++| .+++..+|.++|.+|+||++||+++||
T Consensus 431 ~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa~~~~~~~l~~p-~~i~~~la~~lP~~a~Ff~~yii~~g~ 509 (728)
T KOG1134|consen 431 RYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSALRQLLSILSTP-RLIPKLLAAALPKQASFFITYIITSGW 509 (728)
T ss_pred HHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHhcCH-hHHHHHHhhhChhhHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred HHhHHHHHhHHHHHHHHHHHhhccCChhhHHhhcCC-CCCCCccccchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 020979 81 AGIAAEIIRLVPLVIFHLKNTFLVKTDQDRDEAMDP-GYLRFGTNEPRIQFYILLGLVYAPVTPILLPFIIVFFAFSYVV 159 (319)
Q Consensus 81 ~~~~~~Llr~~~Li~~~~~~~~~~~TpR~~~~~~~p-~~f~yg~~~p~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~v 159 (319)
+|.++||+|+.||+++++++.+..+|||++.++++| +.+++|..||+.+++++|+++||++||+|+|||++||+++|+|
T Consensus 510 ~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~v 589 (728)
T KOG1134|consen 510 AGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSFYFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLV 589 (728)
T ss_pred chhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCccccchhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred HhhheeEEeccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHhhhcCcccccCC
Q 020979 160 FRHQVINVYDQIYESGAAFWPDVHRRIIINLIISQLLLMGLLSTRKADKSTPLLILLPVITIWFHVYCKGRFEPAFVTFP 239 (319)
Q Consensus 160 yKyqllyVy~~~~ESgG~~wp~~~~~~~~~l~i~Ql~m~g~f~lk~~~~~~~~~i~L~i~ti~f~~y~~~~f~~~~~~~p 239 (319)
||||++|||.++|||||++||.+++++++|++++|++|+|+|++|+++..+.+++|++++|++||.+|+.+|.|.+.++|
T Consensus 590 yr~ql~yvy~~~yes~g~~wp~ih~~ii~~l~l~ql~l~gl~~~k~~~~~s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~ 669 (728)
T KOG1134|consen 590 YRYQLIYVYNQKYESGGRFWPDIHRRIIFGLILFQLILFGLFSLKKGAVASVLLFPLIVLTILFHIYCKGRFLPLFIAYP 669 (728)
T ss_pred HhhhhheeecccccccccchHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhChhhhccCCCh-hhhhhhhcccCCCCCCCCCCCCCCCccccccCCccccccc
Q 020979 240 LQEAMVKDTLERATEPNL-NLRTYLQDAYVHPVFKGIQEQNPPAVEEEEDSSPLVATKR 297 (319)
Q Consensus 240 l~~a~~~D~~~~~~~~~~-~~~~~~~~~Y~~PaL~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (319)
++++..+|..++..+++. ...+.+.++|.||++...++++. .++..+++++++.||+
T Consensus 670 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~ 727 (728)
T KOG1134|consen 670 IEEAEVDDTLDEEREPNMENLYNYLKSAYVLPVFLSGSDSDG-SELSSEEKSPIVLTKR 727 (728)
T ss_pred hhhhhhccCCccccCCChhhccccccccccCccccccccccc-cccccccCCcHhhcCC
Confidence 999999999886566644 56678899999999998885542 2222333366666664
No 2
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=9.7e-54 Score=433.91 Aligned_cols=237 Identities=28% Similarity=0.524 Sum_probs=229.0
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCChHHHHHhhcCcchHHHHHHHHHHhhH
Q 020979 2 TMSKIEGFTSLSSLEKRSAGKYYLFILFNVFLGSIVTGTALQQLNTFLNEPPTEIPKTFGVSIPMKATFFITYTMVDGWA 81 (319)
Q Consensus 2 ~ls~~eG~~S~S~~e~~v~~k~f~F~v~nvflv~~l~gs~~~~l~~~~~~p~~~i~~~L~~~lP~~S~FFi~yii~~~~~ 81 (319)
+||++||..|+|++|+.++.|||+|+++|+|+|.+++|+..+.+.+++++| .+++.+||+++|++|+||++||++||++
T Consensus 486 ~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~-~s~~~llA~~lpk~SnFfi~~iilqgl~ 564 (827)
T COG5594 486 WLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEP-TSIMTLLANNLPKASNFFISYIILQGLS 564 (827)
T ss_pred HHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcCh-HhHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhHHHHHhHHHHHHHHHHHhhccCChhhH-HhhcCCCCCCCccccchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 020979 82 GIAAEIIRLVPLVIFHLKNTFLVKTDQDR-DEAMDPGYLRFGTNEPRIQFYILLGLVYAPVTPILLPFIIVFFAFSYVVF 160 (319)
Q Consensus 82 ~~~~~Llr~~~Li~~~~~~~~~~~TpR~~-~~~~~p~~f~yg~~~p~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vy 160 (319)
+.+++|+|+++|+++.+..+|.++|||++ .++..|+.|+||..||+.+++++|++|||+|||+||.||++||++.|++|
T Consensus 565 ~~~~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylay 644 (827)
T COG5594 565 GFPGTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAY 644 (827)
T ss_pred ccchHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 55668999999999999999999999999999999999999999999999
Q ss_pred hhheeEEeccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHhhhcCcccccCC
Q 020979 161 RHQVINVYDQIYESGAAFWPDVHRRIIINLIISQLLLMGLLSTRKADKSTPLLILLPVITIWFHVYCKGRFEPAFVTFP 239 (319)
Q Consensus 161 KyqllyVy~~~~ESgG~~wp~~~~~~~~~l~i~Ql~m~g~f~lk~~~~~~~~~i~L~i~ti~f~~y~~~~f~~~~~~~p 239 (319)
||+++||+++++||||+.||.+++|+++|+++||+||+|+|++.|+|+.+.+++|++.+|++||.+|++.|+|+.++.-
T Consensus 645 kY~l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~~~ik 723 (827)
T COG5594 645 KYNLIYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKYIK 723 (827)
T ss_pred HHHhhhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhccccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997754433
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=6.1e-47 Score=360.87 Aligned_cols=199 Identities=33% Similarity=0.703 Sum_probs=194.1
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCChHHHHHhhcCcchHHHHHHHHHHhhH
Q 020979 2 TMSKIEGFTSLSSLEKRSAGKYYLFILFNVFLGSIVTGTALQQLNTFLNEPPTEIPKTFGVSIPMKATFFITYTMVDGWA 81 (319)
Q Consensus 2 ~ls~~eG~~S~S~~e~~v~~k~f~F~v~nvflv~~l~gs~~~~l~~~~~~p~~~i~~~L~~~lP~~S~FFi~yii~~~~~ 81 (319)
++|++|||.|+|+.|+++++|+|+|+++|+++++++++++++.+.+++++| +++.+.+|+++|++|+||+||++++++.
T Consensus 126 ~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~l~~~~~~~~~~~~~~~-~~i~~~l~~~lp~~s~ffi~~ii~~~~~ 204 (325)
T PF02714_consen 126 FLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPSLAGTILSALKNIINNP-GSILQLLGNFLPNSSNFFINYIILQAFI 204 (325)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCc-chHHHHHHHHhhhhhHHHHHHHHHhcch
Confidence 578999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HhHHHHHhHHHHHHHHHHHhhccCChhhHHhhc-CCCCCCCccccchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 020979 82 GIAAEIIRLVPLVIFHLKNTFLVKTDQDRDEAM-DPGYLRFGTNEPRIQFYILLGLVYAPVTPILLPFIIVFFAFSYVVF 160 (319)
Q Consensus 82 ~~~~~Llr~~~Li~~~~~~~~~~~TpR~~~~~~-~p~~f~yg~~~p~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vy 160 (319)
+.+++|+|+++++++.+++++..+||||+.+.+ ++++|+||..||..+++++|+++||+++|+|+|+|++||++.|++|
T Consensus 205 ~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ 284 (325)
T PF02714_consen 205 GSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEPPPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVD 284 (325)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887779999999877 9999999999999999999999999999999999999999999999
Q ss_pred hhheeEEeccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 020979 161 RHQVINVYDQIYESGAAFWPDVHRRIIINLIISQLLLMGLL 201 (319)
Q Consensus 161 KyqllyVy~~~~ESgG~~wp~~~~~~~~~l~i~Ql~m~g~f 201 (319)
|||++|||++++||||++||.+++++++|++++|++|+|+|
T Consensus 285 ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~~~g~f 325 (325)
T PF02714_consen 285 KYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFTMIGLF 325 (325)
T ss_pred HhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999986
No 4
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=98.12 E-value=0.00035 Score=69.99 Aligned_cols=188 Identities=12% Similarity=0.125 Sum_probs=130.1
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCChHHHHHhhcCcchHHHHHHHHHHhhH
Q 020979 2 TMSKIEGFTSLSSLEKRSAGKYYLFILFNVFLGSIVTGTALQQLNTFLNEPPTEIPKTFGVSIPMKATFFITYTMVDGWA 81 (319)
Q Consensus 2 ~ls~~eG~~S~S~~e~~v~~k~f~F~v~nvflv~~l~gs~~~~l~~~~~~p~~~i~~~L~~~lP~~S~FFi~yii~~~~~ 81 (319)
.|.++|.|.|.++-|.+...|.|.|+++|.+..... -+.+.. ..++. -+. .+..-+.-++++++.+-+.
T Consensus 187 ~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfy-iaF~~~---~~~~~-~~~------~~~~L~~ql~~~~~~~qi~ 255 (452)
T PF04547_consen 187 KLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFY-IAFFYG---VRQEE-CQP------CLSRLRIQLFTIMVTKQII 255 (452)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh---hcccc-cCC------CHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999874332 222222 11111 111 2233455566677777667
Q ss_pred HhHHHHHhHHHHHHHHHHHhhc----cCCh-----------h--hHHhh-cCCCCCCCc---cccchhhHHHHHHHHHhh
Q 020979 82 GIAAEIIRLVPLVIFHLKNTFL----VKTD-----------Q--DRDEA-MDPGYLRFG---TNEPRIQFYILLGLVYAP 140 (319)
Q Consensus 82 ~~~~~Llr~~~Li~~~~~~~~~----~~Tp-----------R--~~~~~-~~p~~f~yg---~~~p~~llv~~I~l~Ysv 140 (319)
+...|.. .|.+.+..+++-. .++. + ++.+. ...++++.. ..|..+..-+.....|++
T Consensus 256 ~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~~~g~~~dY~emviQFGyv~lF~~ 333 (452)
T PF04547_consen 256 NNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYDPDGLFDDYLEMVIQFGYVTLFSA 333 (452)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCCcCCchHHHHHHHHHHHHHHHHHH
Confidence 7777754 6666666644311 1111 0 11111 244555542 677778888888999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhheeEEeccC---CCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 020979 141 VTPILLPFIIVFFAFSYVVFRHQVINVYDQI---YESGAAFWPDVHRRIIINLIISQLLLMGLLS 202 (319)
Q Consensus 141 iaPlIlpf~~~yF~~~~~vyKyqllyVy~~~---~ESgG~~wp~~~~~~~~~l~i~Ql~m~g~f~ 202 (319)
+-|+...++++.-++-.-++++.+++.+.++ -.++=..|-.++.-+...-++.+..++++..
T Consensus 334 afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN~~li~~~s 398 (452)
T PF04547_consen 334 AFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITNAALIAFTS 398 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999874 2334467999999998888888877777763
No 5
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=80.82 E-value=61 Score=34.07 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhheeEEeccCC----CCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 020979 127 RIQFYILLGLVYAPVTPILLPFIIVFFAFSYVVFRHQVINVYDQIY----ESGAAFWPDVHRRIIINLIISQLLLMGLLS 202 (319)
Q Consensus 127 ~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vyKyqllyVy~~~~----ESgG~~wp~~~~~~~~~l~i~Ql~m~g~f~ 202 (319)
.+.+-|-....||++.||-..+|++==.+-.=++-+.+..+..+++ +|=| .|-.++..+-+--++-...++|...
T Consensus 479 el~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG-~Wq~~l~~lSvls~vtncaLi~~~~ 557 (647)
T KOG2513|consen 479 ELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIG-AWQNALELLSVLSCVTNCALIGMYP 557 (647)
T ss_pred HHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhH-HHHHHHHHHHHHHHHHhHHHHhccc
Confidence 4667777888999999999999998888888888888888888753 4444 5777776665555555555555554
Q ss_pred -hhcCCC
Q 020979 203 -TRKADK 208 (319)
Q Consensus 203 -lk~~~~ 208 (319)
+++.|.
T Consensus 558 ~~~~~~~ 564 (647)
T KOG2513|consen 558 QVNKLWP 564 (647)
T ss_pred cccccCc
Confidence 334444
No 6
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=80.71 E-value=5.5 Score=31.85 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=17.2
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHH
Q 020979 170 QIYESGAAFWPDVHRRIIINLIIS 193 (319)
Q Consensus 170 ~~~ESgG~~wp~~~~~~~~~l~i~ 193 (319)
|.-..+|+-||.++.-++.+++++
T Consensus 8 ~~~~~~g~sW~~LVGVv~~al~~S 31 (102)
T PF15176_consen 8 PGPGEGGRSWPFLVGVVVTALVTS 31 (102)
T ss_pred CCCCCCCcccHhHHHHHHHHHHHH
Confidence 456778999998776666665554
No 7
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=79.61 E-value=15 Score=33.68 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=61.7
Q ss_pred ccCChhh-HHhhcCCCCCCCccccchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhee---EEeccCCCCCCcc
Q 020979 103 LVKTDQD-RDEAMDPGYLRFGTNEPRIQFYILLGLVYAPVTPILLPFIIVFFAFSYVVFRHQVI---NVYDQIYESGAAF 178 (319)
Q Consensus 103 ~~~TpR~-~~~~~~p~~f~yg~~~p~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vyKyqll---yVy~~~~ESgG~~ 178 (319)
++..+|| +.|.++.+..- .++...+++.+.+-++.++-+...-......+..+.-|...+ ....|+.+.-|+.
T Consensus 83 ~s~~~~er~LeIMKDsriG---~~Gv~al~~~lllk~~~l~~l~~~~~~~~l~i~~~~~r~~~~~~~~~~~p~~~Glg~~ 159 (235)
T PF02654_consen 83 FSGRDRERRLEIMKDSRIG---AFGVLALVLVLLLKYAALSSLPSHGLALALLIAPVLARLSMLLLAAFSKPRPEGLGAL 159 (235)
T ss_pred cCCCCHHHHHHHHhCCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhH
Confidence 4544555 46666544333 234445555555555555555433323333344455565443 3334556666666
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHhhhcCc
Q 020979 179 WPDVH--RRIIINLIISQLLLMGLLSTRKADKSTPLLILLPVITIWFHVYCKGRFEP 233 (319)
Q Consensus 179 wp~~~--~~~~~~l~i~Ql~m~g~f~lk~~~~~~~~~i~L~i~ti~f~~y~~~~f~~ 233 (319)
+..-. +++..++++.=+..+.+... .+......+...+.+..+..++++++.=
T Consensus 160 f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~lGG 214 (235)
T PF02654_consen 160 FVGSAKKRQVLIALIILLLLALFLGGI--PWIGLLALLVALLLALLLARYARRRLGG 214 (235)
T ss_pred HhccCChhHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 54333 34444444432222222211 1222333444566778888899988863
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.02 E-value=46 Score=35.63 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=40.0
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhheeEEeccCCCCCCccHHHHHHH
Q 020979 126 PRIQFYILLGLVYAPVTPILLPFIIVFFAFSYVVFRHQVINVYDQIYESGAAFWPDVHRR 185 (319)
Q Consensus 126 p~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vyKyqllyVy~~~~ESgG~~wp~~~~~ 185 (319)
+..+++.||+++==+|+=+.+|.-++||+..-+||=+-+ +.. -+|...|++.-.
T Consensus 74 ~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v~~~~~---~~~---~~~~~~~~~~~~ 127 (697)
T PF09726_consen 74 AFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYVWVQYV---WHT---DRGICLPTVSLW 127 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh---hhc---cCCccHHHHHHH
Confidence 466777778888888999999999999999999986533 222 356667776543
No 9
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=56.90 E-value=11 Score=35.92 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=24.9
Q ss_pred CCCCCCCCCCccccccCCcccccccccccCCCCCCCCCCCCCCCC
Q 020979 273 KGIQEQNPPAVEEEEDSSPLVATKRRNWNASKNESDASSKAGSGT 317 (319)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
..+++|+.|+++.+++-+|.|+.+..+......+.....++|-.|
T Consensus 272 v~ed~e~~eeea~Eee~~p~~~~~~~s~e~p~q~~~~~~~Sg~~~ 316 (355)
T KOG3593|consen 272 VSEDSESDEEEAPEEETEPTVPSTTGSTESPSQPTDGRGESGPRT 316 (355)
T ss_pred cccccccccccchhhhcCCCCccccccCCCCCCCccccCCCCCCC
Confidence 344445434444445556666666666555556666666666544
No 10
>PTZ00429 beta-adaptin; Provisional
Probab=53.13 E-value=12 Score=40.40 Aligned_cols=9 Identities=11% Similarity=0.272 Sum_probs=5.6
Q ss_pred HHHHHHHhh
Q 020979 72 ITYTMVDGW 80 (319)
Q Consensus 72 i~yii~~~~ 80 (319)
+.|+.++.+
T Consensus 313 iqyvaLr~I 321 (746)
T PTZ00429 313 TQYIVCKNI 321 (746)
T ss_pred HHHHHHHHH
Confidence 666666653
No 11
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=48.53 E-value=90 Score=29.39 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeEEeccCCCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 020979 143 PILLPFIIVFFAFSYVVFRHQVINVYDQIYESGA---AFWPDVHRRIIINLIISQLLLMGLLS 202 (319)
Q Consensus 143 PlIlpf~~~yF~~~~~vyKyqllyVy~~~~ESgG---~~wp~~~~~~~~~l~i~Ql~m~g~f~ 202 (319)
|..+++|+++.++-+.++|+-+.=+-.... ++. ..+|+++--++.|+++++....-+|-
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~-~~~~~~~~~~R~~lAvliaivIs~pl~l~iF~ 107 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDG-SRKRLLQALPRLLLAVLIAIVISEPLELKIFE 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999998874432221 111 34444444555555555554444443
No 12
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=46.06 E-value=1e+02 Score=27.86 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=49.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHhhheeEEeccCCCCCCccHHHHHH--HHHHHHHHHHHHHHHHHHhhc-CCC--
Q 020979 134 LGLVYAPVTPILLPFIIVFFAFSYVVFRHQVINVYDQIYESGAAFWPDVHR--RIIINLIISQLLLMGLLSTRK-ADK-- 208 (319)
Q Consensus 134 I~l~YsviaPlIlpf~~~yF~~~~~vyKyqllyVy~~~~ESgG~~wp~~~~--~~~~~l~i~Ql~m~g~f~lk~-~~~-- 208 (319)
+..++..-.|+.++.+++||+.-..+-+.|.=+.++. | ..+ ..-++++.+-.. .|...+++ +..
T Consensus 48 ll~v~~~~~~~~i~~~i~yf~yLrYiL~~~~~f~id~--e--------pYR~FY~~Isli~~l~~-~gyvlvr~~s~~~~ 116 (206)
T PF09874_consen 48 LLYVFFISPLILIPLFIFYFIYLRYILIRNRNFMIDF--E--------PYRFFYYGISLIGFLSF-LGYVLVRRFSFEVY 116 (206)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhccceeEech--h--------HHHHHHHHHhhhhheee-cchhhheeccchhh
Confidence 3445533355567788889988777755554444433 1 122 223333333322 33333333 322
Q ss_pred cccHH-HHHHHHHHHHHHHHhhhcCccccc
Q 020979 209 STPLL-ILLPVITIWFHVYCKGRFEPAFVT 237 (319)
Q Consensus 209 ~~~~~-i~L~i~ti~f~~y~~~~f~~~~~~ 237 (319)
..... +...+..++|.+|.+.+|.+...+
T Consensus 117 ~y~~yL~~v~laVl~fr~~Fr~ky~RdyTy 146 (206)
T PF09874_consen 117 PYYTYLGFVFLAVLAFRYYFRSKYGRDYTY 146 (206)
T ss_pred hHHHHHHHHHHHHHHHhhheeeeeccccee
Confidence 22222 223347788999999999987655
No 13
>PF15159 PIG-Y: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Probab=45.77 E-value=18 Score=27.28 Aligned_cols=26 Identities=27% Similarity=0.731 Sum_probs=23.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHhh
Q 020979 137 VYAPVTPILLPFIIVFFAFSYVVFRH 162 (319)
Q Consensus 137 ~YsviaPlIlpf~~~yF~~~~~vyKy 162 (319)
=|+.+.|+.+|...++=...|+-+|+
T Consensus 43 yY~lLvPl~iPv~~~~vy~nWls~k~ 68 (72)
T PF15159_consen 43 YYCLLVPLTIPVTIVFVYFNWLSWKF 68 (72)
T ss_pred ceeeehhhhhhHHHHHHHHHHHhHHH
Confidence 37889999999999999999998875
No 14
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=45.47 E-value=3.5e+02 Score=27.58 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=53.1
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhheeEEeccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020979 124 NEPRIQFYILLGLVYAPVTPILLPFIIVFFAFSYVVFRHQVINVYDQIYESGAAFWPDVHRRIIINLIISQLLLMGLLST 203 (319)
Q Consensus 124 ~~p~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vyKyqllyVy~~~~ESgG~~wp~~~~~~~~~l~i~Ql~m~g~f~l 203 (319)
.-|....+.++.++|.+..-++ +.+||.++-=.| |.-+.-..++...-.-+=+..+++|+.. +-+.-
T Consensus 262 ~S~yL~~ia~~vi~y~~~~nlv-----------e~~~k~~v~~~~-p~~~~~~~f~g~~~~~~gi~tl~~~l~~-~~l~~ 328 (472)
T TIGR00769 262 SSPYILDLALLVIAYGISINLV-----------EVTWKSKLKAQY-PSPNEYSAFMGDFSTWTGVVSVTMMLLS-GNVIR 328 (472)
T ss_pred hCHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3456666677777777665444 578888886666 5555556777775333333334667666 66666
Q ss_pred hcCCCcccHHHHHHHHH
Q 020979 204 RKADKSTPLLILLPVIT 220 (319)
Q Consensus 204 k~~~~~~~~~i~L~i~t 220 (319)
|.+|..+.+..|+.++.
T Consensus 329 ~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 329 KYGWLTAALITPLVMLL 345 (472)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 77777776777765544
No 15
>COG0368 CobS Cobalamin-5-phosphate synthase [Coenzyme metabolism]
Probab=44.36 E-value=2.1e+02 Score=26.52 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=56.5
Q ss_pred ChhhHHhhcCCCCCCCccccchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--HHhhheeEE-eccCCCCCCccHHHH
Q 020979 106 TDQDRDEAMDPGYLRFGTNEPRIQFYILLGLVYAPVTPILLPFIIVFFAFSYV--VFRHQVINV-YDQIYESGAAFWPDV 182 (319)
Q Consensus 106 TpR~~~~~~~p~~f~yg~~~p~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~--vyKyqllyV-y~~~~ESgG~~wp~~ 182 (319)
+|++|.|.++-+... .++...+++.+.+-++.++=+..-.......+.-+ ..+=..+.. ..|.+...|.+....
T Consensus 91 ~~er~leiMkDsrvG---~~Gv~ali~vlll~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 167 (246)
T COG0368 91 SRERKLEIMKDSRVG---AGGVAALILVLLLKVLALASLLDLGAAALLALAEVLAKSRMLLVALLSKPPYAGLGGLGKEF 167 (246)
T ss_pred CHHHHHHHHhCCCcC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHH
Confidence 343445566544333 23344555555555555544443112222222222 222222222 345666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHhhhcCc
Q 020979 183 HRRIIINLIISQLLLMGLLSTRKADKSTPLLILLPVITIWFHVYCKGRFEP 233 (319)
Q Consensus 183 ~~~~~~~l~i~Ql~m~g~f~lk~~~~~~~~~i~L~i~ti~f~~y~~~~f~~ 233 (319)
.+..-....+......++..+--.....+.++...++..++..+|++++.=
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~r~~GG 218 (246)
T COG0368 168 ADPRKGLIGALLLLVLLLLALLFGLSGAIAVAVALLAAALLGRLAKRRFGG 218 (246)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444333333333333222221111112233444567788889999988864
No 16
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=43.86 E-value=68 Score=26.91 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=21.2
Q ss_pred ccchhhHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHhhhe
Q 020979 124 NEPRIQFYILLGLVYAP-VTPILLPFIIVFFAFSYVVFRHQV 164 (319)
Q Consensus 124 ~~p~~llv~~I~l~Ysv-iaPlIlpf~~~yF~~~~~vyKyql 164 (319)
+..+..+++++.++++. ..|..+...++.....+++++.+-
T Consensus 40 F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03208_consen 40 FQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444445444444444 457766655555555555555443
No 17
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=42.14 E-value=49 Score=26.97 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=35.9
Q ss_pred cCCCCCCCccc-----cchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhheeEEeccCC
Q 020979 114 MDPGYLRFGTN-----EPRIQFYILLGLVYAPVTPILLPFIIVFFAFSYVVFRHQVINVYDQIY 172 (319)
Q Consensus 114 ~~p~~f~yg~~-----~p~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vyKyqllyVy~~~~ 172 (319)
...++|+-... |++. +.=+|.-||++-|+ .+++-+.+.+.+.|+.+++...|+.
T Consensus 47 ~g~~eF~i~~nvL~liY~Qt--l~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~~ 105 (111)
T PF07810_consen 47 PGKPEFDIPKNVLDLIYNQT--LVWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPPQ 105 (111)
T ss_pred CCCCCccHhhhHHHHHHcch--hhhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34556665543 2332 23356677766666 5677778888999999999998853
No 18
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.01 E-value=2.5e+02 Score=24.94 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q 020979 214 ILLPVITIWFHVYCKGRFE 232 (319)
Q Consensus 214 i~L~i~ti~f~~y~~~~f~ 232 (319)
+.+=++++...+|++++|.
T Consensus 184 iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 184 IIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4455677888899998885
No 19
>TIGR00317 cobS cobalamin 5'-phosphate synthase/cobalamin synthase. cobS is involved with cobalamin biosynthesis in part III of colbalmin biosynthesis. The enzyme catyalzes the reactions adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP and adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP. The protein product is associated with a large complex of proteins and is induced by cobinamide.
Probab=41.34 E-value=2.2e+02 Score=26.11 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhcC
Q 020979 217 PVITIWFHVYCKGRFE 232 (319)
Q Consensus 217 ~i~ti~f~~y~~~~f~ 232 (319)
.+....+++++++++.
T Consensus 204 ~~~~~~~~~~~~k~iG 219 (241)
T TIGR00317 204 ILIGLLVGRYAKRHFG 219 (241)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3445566777777765
No 20
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=40.42 E-value=3.5e+02 Score=26.15 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=32.6
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-------cHHHHHHHHHHHHHHHHhhhcCcccccCChhHhh
Q 020979 172 YESGAAFWPDVHRRIIINLIISQLLLMGLLSTRKADKST-------PLLILLPVITIWFHVYCKGRFEPAFVTFPLQEAM 244 (319)
Q Consensus 172 ~ESgG~~wp~~~~~~~~~l~i~Ql~m~g~f~lk~~~~~~-------~~~i~L~i~ti~f~~y~~~~f~~~~~~~pl~~a~ 244 (319)
++....-|....+++...+++.=-..+.++.+-+-++-+ ...+-+.+..++.+..+.|-..=..+.+..+.|.
T Consensus 185 ~~~~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~v~~RRLA~~Ra~ 264 (340)
T PF12794_consen 185 YQPKPDSWIHRLRYLWWPLLILAPLALIVLALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWLLVARRRLAYERAK 264 (340)
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666555544444433333333322221 2233444445555555555443333334444443
Q ss_pred h
Q 020979 245 V 245 (319)
Q Consensus 245 ~ 245 (319)
+
T Consensus 265 ~ 265 (340)
T PF12794_consen 265 E 265 (340)
T ss_pred H
Confidence 3
No 21
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.69 E-value=41 Score=27.92 Aligned_cols=29 Identities=3% Similarity=0.370 Sum_probs=22.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 020979 133 LLGLVYAPVTPILLPFIIVFFAFSYVVFR 161 (319)
Q Consensus 133 ~I~l~YsviaPlIlpf~~~yF~~~~~vyK 161 (319)
+++++++|++.+|+...+++|++.=.-.|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57889999999999888888877655544
No 22
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.34 E-value=6.2e+02 Score=29.64 Aligned_cols=36 Identities=28% Similarity=0.208 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 020979 127 RIQFYILLGLVYAPVTPILLPFIIVFFAFSYVVFRH 162 (319)
Q Consensus 127 ~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vyKy 162 (319)
..+.+..+..+=++..|+.+.+++..+.+.|++.+|
T Consensus 942 ~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~ 977 (1381)
T KOG0054|consen 942 SLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRY 977 (1381)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444455566677788999888888777777777776
No 23
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=33.93 E-value=3.9e+02 Score=29.36 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=52.7
Q ss_pred CcchHHHHHHHHHHhhHHhHHHHHhHH----HHHHHHHHHhhc-----cCChhhHHhhcCCCCCCCccccchhhHHHHHH
Q 020979 65 PMKATFFITYTMVDGWAGIAAEIIRLV----PLVIFHLKNTFL-----VKTDQDRDEAMDPGYLRFGTNEPRIQFYILLG 135 (319)
Q Consensus 65 P~~S~FFi~yii~~~~~~~~~~Llr~~----~Li~~~~~~~~~-----~~TpR~~~~~~~p~~f~yg~~~p~~llv~~I~ 135 (319)
|.-+.-+...|..-|.+...++++-+. -|.+|.+.+.-+ -+||. |+|+ |. +|.+.+.+.-..
T Consensus 546 Pt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavqtLLrtPn-----WRPR-fk---yyHW~LSflG~s 616 (1075)
T KOG2082|consen 546 PTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPN-----WRPR-FK---YYHWSLSFLGAS 616 (1075)
T ss_pred ccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC-----CCcc-ch---hhhhHHHHHHHH
Confidence 444555666666666665566654332 233444433211 14542 3333 32 455566666666
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 020979 136 LVYAPVTPILLPFIIVFFAFSYVVFRHQ 163 (319)
Q Consensus 136 l~YsviaPlIlpf~~~yF~~~~~vyKyq 163 (319)
||++++-----+++++...++-++|||-
T Consensus 617 LC~~iMF~~SWyyAlvAm~~a~~IYKYi 644 (1075)
T KOG2082|consen 617 LCLAIMFISSWYYALVAMLIAGVIYKYI 644 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666556778888899999999984
No 24
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=32.73 E-value=5.3e+02 Score=25.95 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=36.7
Q ss_pred HHHhhcCcchHHHH-HHHHHHhhHHhHHHHHhHHHHHHHHHHHhhccCChhhHHhhcCCC
Q 020979 59 TFGVSIPMKATFFI-TYTMVDGWAGIAAEIIRLVPLVIFHLKNTFLVKTDQDRDEAMDPG 117 (319)
Q Consensus 59 ~L~~~lP~~S~FFi-~yii~~~~~~~~~~Llr~~~Li~~~~~~~~~~~TpR~~~~~~~p~ 117 (319)
.+.-++|..-.+-+ =|++..++++...|++|.++= .+.+..|-+.|=.|.++.|+.|
T Consensus 256 ~lkL~~P~~~~~Ll~Fy~ifh~~LN~~AEltrFgDR--~FY~DWWNs~s~~eywR~WN~P 313 (410)
T PLN03242 256 VLKLSIPNLYVWLLMFYCFFHLWLNIVAELLCFGDR--EFYKDWWNASEVSEYWRLWNMP 313 (410)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhccCcHHHHHHHcchH
Confidence 34445677655554 367788999999999999883 2223444556666666666443
No 25
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=31.61 E-value=5e+02 Score=25.36 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=41.2
Q ss_pred CCCCccccchhhHHHHHHHHHhhhhhhHH------HHHHHHHHHHHHHHhhheeEEeccC--CCCCCccHHHHHHHHHHH
Q 020979 118 YLRFGTNEPRIQFYILLGLVYAPVTPILL------PFIIVFFAFSYVVFRHQVINVYDQI--YESGAAFWPDVHRRIIIN 189 (319)
Q Consensus 118 ~f~yg~~~p~~llv~~I~l~YsviaPlIl------pf~~~yF~~~~~vyKyqllyVy~~~--~ESgG~~wp~~~~~~~~~ 189 (319)
-+.++..|....-....+++..++.|+.. +...+-+.+..+..|...++.-..+ .+.+.+.+...++.++.+
T Consensus 96 y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~~~~~~~~~~~l~~lK~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (386)
T PF05975_consen 96 YFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFSFWEFLLLLLFLLALKWWNLLLKWQELRFQPKWRRWKRLLRLILNA 175 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566666666667777778888888866 2223444445555555555442221 223345555555555444
Q ss_pred HHH
Q 020979 190 LII 192 (319)
Q Consensus 190 l~i 192 (319)
+..
T Consensus 176 ~~~ 178 (386)
T PF05975_consen 176 LIL 178 (386)
T ss_pred HHH
Confidence 443
No 26
>PLN02401 diacylglycerol o-acyltransferase
Probab=31.53 E-value=5.7e+02 Score=26.00 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=36.5
Q ss_pred HHHhhcCcchHHHH-HHHHHHhhHHhHHHHHhHHHHHHHHHHHhhccCChhhHHhhcCCC
Q 020979 59 TFGVSIPMKATFFI-TYTMVDGWAGIAAEIIRLVPLVIFHLKNTFLVKTDQDRDEAMDPG 117 (319)
Q Consensus 59 ~L~~~lP~~S~FFi-~yii~~~~~~~~~~Llr~~~Li~~~~~~~~~~~TpR~~~~~~~p~ 117 (319)
.+.-++|..-.+-+ =|++..+++....|++|.++= .+.+..|-+.|=.|.++.|+.|
T Consensus 281 ~lkLs~P~~~~wLl~Fy~ifh~~LN~~AEltrFgDR--~FY~DWWNs~s~~eywR~WN~P 338 (446)
T PLN02401 281 VLKLSVPNLYVWLCMFYCFFHLWLNILAELLRFGDR--EFYKDWWNAKTVEEYWRMWNMP 338 (446)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhhccCcHHHHHHHcchH
Confidence 33445676554443 467788999999999999983 2223444556666766666544
No 27
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=30.85 E-value=84 Score=20.27 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=22.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHhhhe
Q 020979 135 GLVYAPVTPILLPFIIVFFAFSYVVFRHQV 164 (319)
Q Consensus 135 ~l~YsviaPlIlpf~~~yF~~~~~vyKyql 164 (319)
.+=++++.|+++.+.+..+-++...+.++.
T Consensus 4 ~vEfalv~Pvl~~~~~~~~~~~~~~~~~~~ 33 (43)
T PF07811_consen 4 TVEFALVLPVLLLLLFGIVELGRMFYAQQV 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999998877777777777776654
No 28
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=29.36 E-value=3.3e+02 Score=23.55 Aligned_cols=47 Identities=4% Similarity=-0.044 Sum_probs=27.1
Q ss_pred hheeEEeccCCCCCCccHHH---------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 020979 162 HQVINVYDQIYESGAAFWPD---------VHRRIIINLIISQLLLMGLLSTRKADK 208 (319)
Q Consensus 162 yqllyVy~~~~ESgG~~wp~---------~~~~~~~~l~i~Ql~m~g~f~lk~~~~ 208 (319)
|.+-+.=.|+|+.+|++=.. +..++..-+++.=++-++.+...+.|.
T Consensus 63 ~~l~~~~rp~~~~~g~Lv~~G~DL~~~G~l~ey~~Diiylt~~vq~l~~~s~~~w~ 118 (170)
T PF05620_consen 63 YFLEKMARPKYDETGELVDAGEDLNQPGGLTEYMFDIIYLTWFVQVLSIISNKFWW 118 (170)
T ss_pred HHHHHhCCCCcCCCCCeecCcccccCCcchHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445557777755544322 466666666666666666666555543
No 29
>KOG1821 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.08 E-value=2.1e+02 Score=28.67 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 020979 128 IQFYILLGLVYAPVTPILLPFIIVFFAFSYVVFR 161 (319)
Q Consensus 128 ~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vyK 161 (319)
..++.|++.+=-+|+=|..|.-+++|+..-+||-
T Consensus 119 SVfFiCVaaTSdiIC~LFIPIqmL~F~AsTYVWi 152 (662)
T KOG1821|consen 119 SVFFICVAATSDIICLLFIPIQMLFFAASTYVWI 152 (662)
T ss_pred eeEEeehhhccceeeehhHHHHHHHHHHhhheee
Confidence 3445677777778899999999999999988873
No 30
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=28.87 E-value=73 Score=31.49 Aligned_cols=37 Identities=24% Similarity=0.606 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHhhheeEE
Q 020979 131 YILLGLVYAPVTPILLPFIIVFFAFSYV-VFRHQVINV 167 (319)
Q Consensus 131 v~~I~l~YsviaPlIlpf~~~yF~~~~~-vyKyqllyV 167 (319)
+..+|++.-+++|+|+.+-++||++.|. .+|.+--+.
T Consensus 121 f~~~gi~nlll~Pfi~i~~il~~ff~y~e~~~~~P~~l 158 (370)
T PF04109_consen 121 FRLAGILNLLLSPFILIYQILYFFFKYAEEFKKNPGSL 158 (370)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhChHhh
Confidence 5677889999999999999999999887 444444433
No 31
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=27.45 E-value=85 Score=27.28 Aligned_cols=33 Identities=15% Similarity=0.415 Sum_probs=17.1
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhee
Q 020979 124 NEPRIQFYILLGLVYAPVTPILLPFIIVFFAFSYVVFRHQVI 165 (319)
Q Consensus 124 ~~p~~llv~~I~l~YsviaPlIlpf~~~yF~~~~~vyKyqll 165 (319)
++..++..+.+|++| |++-||.+.|++-|+++.
T Consensus 5 ~~~~~~~~i~iGl~~---------f~iYyfvF~flI~kfnlk 37 (161)
T PRK09702 5 HADMMLTQIAIGLCF---------TLLYFVVFRTLILQFNMC 37 (161)
T ss_pred ccccchhHHHHHHHH---------HHHHHHHHHHHHHHcCCC
Confidence 444445555555444 233455556666666653
No 32
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=26.99 E-value=7.4e+02 Score=25.84 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhheeEEe----ccCCCCCCccHHHHHHHHHHHHHHH
Q 020979 141 VTPILLPFIIVFFAFSYVVFRHQVINVY----DQIYESGAAFWPDVHRRIIINLIIS 193 (319)
Q Consensus 141 iaPlIlpf~~~yF~~~~~vyKyqllyVy----~~~~ESgG~~wp~~~~~~~~~l~i~ 193 (319)
++.+-..++...-++.++..||+.-..- +-.|++.+.-|-..+...+..+.+.
T Consensus 401 ~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~ 457 (554)
T KOG1286|consen 401 LSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILL 457 (554)
T ss_pred HHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHH
Confidence 4455566777778888999999876654 2258888888887777666665543
No 33
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=26.77 E-value=21 Score=33.99 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc--HHHHHHHHHHHHHHHHhhhc
Q 020979 172 YESGAAFWPDVHRRIIINLIISQLLLMGLLSTRKADKSTP--LLILLPVITIWFHVYCKGRF 231 (319)
Q Consensus 172 ~ESgG~~wp~~~~~~~~~l~i~Ql~m~g~f~lk~~~~~~~--~~i~L~i~ti~f~~y~~~~f 231 (319)
.|-|..+|..+--++-++|-+ +.++--..++++|.-.. +.-.++++.+..|.|.+..+
T Consensus 130 r~~GAs~WtiLaFcLAF~Lai--vlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H~~~ 189 (381)
T PF05297_consen 130 RELGASFWTILAFCLAFLLAI--VLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVHDQR 189 (381)
T ss_dssp --------------------------------------------------------------
T ss_pred HHhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 355778887655444443333 22333334677775432 12234556666677776555
No 34
>PF15471 TMEM171: Transmembrane protein family 171
Probab=26.51 E-value=23 Score=33.36 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=28.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHhhheeEEecc
Q 020979 136 LVYAPVTPILLPFIIVFFAFSYVVFRHQVINVYDQ 170 (319)
Q Consensus 136 l~YsviaPlIlpf~~~yF~~~~~vyKyqllyVy~~ 170 (319)
|..-++-|||...|++||.++++=.|+|+-=.-+.
T Consensus 160 LslQImGPlIVl~GLCFFVVAHvKKr~nln~~qd~ 194 (319)
T PF15471_consen 160 LSLQIMGPLIVLVGLCFFVVAHVKKRNNLNGSQDA 194 (319)
T ss_pred eehhhhhhHHHHHhhhhhheeeeeeccCCCcccCc
Confidence 34567789999999999999999888887555444
No 35
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=25.19 E-value=89 Score=25.72 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHH-HHHHh
Q 020979 190 LIISQLLLMGLLSTRKADKSTPLLILLPVITIWF-HVYCK 228 (319)
Q Consensus 190 l~i~Ql~m~g~f~lk~~~~~~~~~i~L~i~ti~f-~~y~~ 228 (319)
-+---+.|+|.. .+|+.+-++..|+++.++| -+|-+
T Consensus 46 r~tepis~lg~y---sawgagsfiatliillviffviy~r 82 (150)
T PF06084_consen 46 RYTEPISMLGIY---SAWGAGSFIATLIILLVIFFVIYSR 82 (150)
T ss_pred eccCcchhhhhh---hhcccchHHHHHHHHHHHhheeEec
Confidence 344445566654 4677777777776655444 44433
No 36
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=24.51 E-value=89 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.621 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhh
Q 020979 141 VTPILLPFIIVFFAFSYVVFRH 162 (319)
Q Consensus 141 iaPlIlpf~~~yF~~~~~vyKy 162 (319)
|.=+|..+++++|.++|+..++
T Consensus 6 iiQii~l~AlI~~pLGyl~~~~ 27 (62)
T PF11120_consen 6 IIQIIILCALIFFPLGYLARRW 27 (62)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 4456788999999999998775
No 37
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=23.46 E-value=1.1e+02 Score=21.75 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=28.8
Q ss_pred HHhhheeEEeccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020979 159 VFRHQVINVYDQIYESGAAFWPDVHRRIIINLIISQLLLMGLLSTRK 205 (319)
Q Consensus 159 vyKyqllyVy~~~~ESgG~~wp~~~~~~~~~l~i~Ql~m~g~f~lk~ 205 (319)
..||.++|.|+.+...+ .+|-.++ +++++++++-+.=++++.+.+
T Consensus 4 l~rH~~myfce~k~R~N-sF~fVii-k~vismimylilGi~L~yis~ 48 (54)
T PF04835_consen 4 LFRHCFMYFCENKLRPN-SFWFVII-KSVISMIMYLILGIALIYISS 48 (54)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHH-HHHHHHHHHHHHHHHHhhhcc
Confidence 46899999999976654 3665544 455666666555555555443
No 38
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=21.19 E-value=3.1e+02 Score=22.92 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=22.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHhhheeEEeccCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 020979 136 LVYAPVTPILLPFIIVFFAFSYVVFRHQVINVYDQIYESGAAFWPDVHRRIIINLIISQLLL 197 (319)
Q Consensus 136 l~YsviaPlIlpf~~~yF~~~~~vyKyqllyVy~~~~ESgG~~wp~~~~~~~~~l~i~Ql~m 197 (319)
++.=++.-++..|.+.|++..+.. .|.....|++.|++.+=+++
T Consensus 81 ~v~Nilvsv~~~~~~~~~~~~~~~------------------~~~~~~~Rvllgl~~al~vl 124 (142)
T PF11712_consen 81 TVFNILVSVFAVFFAGWYWAGYSF------------------GGWSFPYRVLLGLFGALLVL 124 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh------------------cccchHHHHHHHHHHHHHHH
Confidence 333344444445556665555544 23334566666666655444
No 39
>PRK00235 cobS cobalamin synthase; Reviewed
Probab=21.07 E-value=4.2e+02 Score=24.33 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhcCc
Q 020979 217 PVITIWFHVYCKGRFEP 233 (319)
Q Consensus 217 ~i~ti~f~~y~~~~f~~ 233 (319)
.++...++++++|++.=
T Consensus 207 ~~~~~~~~~~~~r~~GG 223 (249)
T PRK00235 207 LVAAFLLGRLFVRRLGG 223 (249)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 33446677888888763
No 40
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=20.58 E-value=6.9e+02 Score=23.22 Aligned_cols=81 Identities=12% Similarity=0.204 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHcCCCCChHHHHHhhcCcchHHHHHHHHHHhhHHhHHHHHhHH
Q 020979 13 SSLEKRSAGKYYLFILFNVFLGS-IVTGTALQQLNTFLNEPPTEIPKTFGVSIPMKATFFITYTMVDGWAGIAAEIIRLV 91 (319)
Q Consensus 13 S~~e~~v~~k~f~F~v~nvflv~-~l~gs~~~~l~~~~~~p~~~i~~~L~~~lP~~S~FFi~yii~~~~~~~~~~Llr~~ 91 (319)
|..|+.++-|.-....+..+++. .+.|++...+....++-+.++.+.++.++|.--.+++-.++.--.+..++-|+=++
T Consensus 71 s~eqq~~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L~ivP 150 (248)
T PF06790_consen 71 SPEQQNVLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFMLFIVP 150 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55666777777777666666663 45677777777766543367888999988876555555554444455566666544
Q ss_pred HH
Q 020979 92 PL 93 (319)
Q Consensus 92 ~L 93 (319)
..
T Consensus 151 GI 152 (248)
T PF06790_consen 151 GI 152 (248)
T ss_pred HH
Confidence 44
No 41
>KOG0831 consensus Acyl-CoA:diacylglycerol acyltransferase (DGAT) [Lipid transport and metabolism]
Probab=20.12 E-value=6.1e+02 Score=24.74 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhhheeEEecc-CCCCCCccHHHHHHHHHHHHHH
Q 020979 145 LLPFIIVFFAFSYVVFRHQVINVYDQ-IYESGAAFWPDVHRRIIINLII 192 (319)
Q Consensus 145 Ilpf~~~yF~~~~~vyKyqllyVy~~-~~ESgG~~wp~~~~~~~~~l~i 192 (319)
++|+++++-.+-.++.=|-+.+.|++ ..+.||+.|..+-+..+...+.
T Consensus 36 ~~~~~~~~~~~w~~~~ly~vw~~~d~~~~~~~g~~~~~~r~~~l~k~~~ 84 (334)
T KOG0831|consen 36 NVPFALLFTRFWPLAILYAVWLYYDRDTPKKGGRRSNWFRNWPIWKWFC 84 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeccCCCCcccccHHHHHHHHHHHHHHh
Confidence 45555555555666777888888998 4688899998888777765543
Done!