Query 020979
Match_columns 319
No_of_seqs 185 out of 679
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rdd_B UPF0092 membrane protei 36.0 17 0.00058 22.6 1.6 16 140-155 5-20 (37)
2 2kv5_A FST, putative uncharact 22.9 91 0.0031 19.0 3.2 25 28-52 4-28 (33)
3 3cx8_B RHO guanine nucleotide 21.9 57 0.002 28.2 3.0 36 69-113 37-72 (203)
4 3arc_K Photosystem II reaction 21.9 66 0.0023 20.1 2.4 25 137-161 5-31 (37)
5 1iap_A Guanine nucleotide exch 21.2 81 0.0028 27.4 3.8 36 69-113 19-54 (211)
6 3ab3_B RHO guanine nucleotide 13.8 83 0.0029 27.9 2.2 35 69-112 73-107 (246)
7 4hkr_A Calcium release-activat 13.6 1.6E+02 0.0055 25.5 3.8 43 185-227 119-168 (214)
8 2amn_A Cathelicidin; linear he 12.0 69 0.0024 18.2 0.7 14 177-190 4-17 (26)
9 1afo_A Glycophorin A; integral 11.4 2.4E+02 0.0083 17.8 3.1 26 133-158 12-37 (40)
10 2j5d_A BNIP3 TM, BCL2/adenovir 9.0 4.1E+02 0.014 17.2 3.7 28 174-201 8-35 (45)
No 1
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=35.97 E-value=17 Score=22.61 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHH
Q 020979 140 PVTPILLPFIIVFFAF 155 (319)
Q Consensus 140 viaPlIlpf~~~yF~~ 155 (319)
.+.|+++.++.+||.+
T Consensus 5 ~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 5 LILMLVVFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567788888888765
No 2
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=22.89 E-value=91 Score=19.00 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHcCC
Q 020979 28 LFNVFLGSIVTGTALQQLNTFLNEP 52 (319)
Q Consensus 28 v~nvflv~~l~gs~~~~l~~~~~~p 52 (319)
+++..+++++.|-++..++.++++-
T Consensus 4 i~~~IIaPivVGvvl~L~d~WLn~r 28 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVLDEE 28 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4677888999999999999998764
No 3
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F
Probab=21.89 E-value=57 Score=28.23 Aligned_cols=36 Identities=14% Similarity=0.352 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhHHhHHHHHhHHHHHHHHHHHhhccCChhhHHhh
Q 020979 69 TFFITYTMVDGWAGIAAEIIRLVPLVIFHLKNTFLVKTDQDRDEA 113 (319)
Q Consensus 69 ~FFi~yii~~~~~~~~~~Llr~~~Li~~~~~~~~~~~TpR~~~~~ 113 (319)
.=|++||+.|+ -+.||++|.+...+...+++|.++|
T Consensus 37 avFL~yvlsq~---------dP~~LlfyL~~d~yk~~~~Ke~rk~ 72 (203)
T 3cx8_B 37 VVFLRYILSQA---------DPGPLLFYLCSEVYQQTNPKDSRSL 72 (203)
T ss_dssp HHHHHHHHHHS---------CSHHHHHHHHHHHHHTSCTTTCHHH
T ss_pred HHHHHHHHhcC---------CchHHHHHHHHHHHhccChHHHHHH
Confidence 45899999986 5667778877666666677775544
No 4
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=21.89 E-value=66 Score=20.05 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=19.5
Q ss_pred HHhhhhhhH--HHHHHHHHHHHHHHHh
Q 020979 137 VYAPVTPIL--LPFIIVFFAFSYVVFR 161 (319)
Q Consensus 137 ~YsviaPlI--lpf~~~yF~~~~~vyK 161 (319)
+|++..|+| +|..=++|.+.-+||.
T Consensus 5 aya~f~PivDvmPiIPv~f~lLafvWQ 31 (37)
T 3arc_K 5 AYAIFDPLVDVLPVIPVLFLALAFVWQ 31 (37)
T ss_dssp GGGGGHHHHHHGGGHHHHHHHHHHHHH
T ss_pred hhhhhchHHHHhchHHHHHHHHHHHHH
Confidence 688999995 7777778877777774
No 5
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=21.24 E-value=81 Score=27.42 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhHHhHHHHHhHHHHHHHHHHHhhccCChhhHHhh
Q 020979 69 TFFITYTMVDGWAGIAAEIIRLVPLVIFHLKNTFLVKTDQDRDEA 113 (319)
Q Consensus 69 ~FFi~yii~~~~~~~~~~Llr~~~Li~~~~~~~~~~~TpR~~~~~ 113 (319)
.=|++||+.|+ -+.||++|.+...+...+|.|-++|
T Consensus 19 aVFL~yV~sq~---------DPspLLfYL~tdlYk~~~~Ke~rk~ 54 (211)
T 1iap_A 19 MALLQHVALQF---------EPGPLLCCLHADMLGSLGPKEAKKA 54 (211)
T ss_dssp HHHHHHHHHHS---------CSHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHcC---------CchhhHHHHHHHHHhccChHHHHHH
Confidence 45899999886 6888889888777767788886554
No 6
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=13.83 E-value=83 Score=27.93 Aligned_cols=35 Identities=6% Similarity=-0.015 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhHHhHHHHHhHHHHHHHHHHHhhccCChhhHHh
Q 020979 69 TFFITYTMVDGWAGIAAEIIRLVPLVIFHLKNTFLVKTDQDRDE 112 (319)
Q Consensus 69 ~FFi~yii~~~~~~~~~~Llr~~~Li~~~~~~~~~~~TpR~~~~ 112 (319)
.=|++||+.|. -+.||++|.+...+...+++|-++
T Consensus 73 aVFL~yV~sq~---------DPspLLfYL~tdlYk~~~~Ke~Rk 107 (246)
T 3ab3_B 73 MALLQHVALQF---------EPGPLLCCLHADMLGSLGPKEAKK 107 (246)
T ss_dssp HHHHHHHHHHS---------CSHHHHHHHHHHHHC-------CC
T ss_pred HHHHHHHHhcC---------CchhhHHHHHHHHHhccChHHHHH
Confidence 56899999886 688888888877666667776443
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=13.56 E-value=1.6e+02 Score=25.50 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC-------CCcccHHHHHHHHHHHHHHHH
Q 020979 185 RIIINLIISQLLLMGLLSTRKA-------DKSTPLLILLPVITIWFHVYC 227 (319)
Q Consensus 185 ~~~~~l~i~Ql~m~g~f~lk~~-------~~~~~~~i~L~i~ti~f~~y~ 227 (319)
-+..|+++|-+-++-++++|-- |..++.++|..++-+.|...+
T Consensus 119 ST~lGi~LFL~evall~WVKF~~~~~~aa~~~t~vliPv~i~F~~Fa~hF 168 (214)
T 4hkr_A 119 STLLGLILFLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAIHF 168 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888743 223445566555444444433
No 8
>2amn_A Cathelicidin; linear helix, antimicrobial protein; NMR {Synthetic}
Probab=12.02 E-value=69 Score=18.20 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=10.1
Q ss_pred ccHHHHHHHHHHHH
Q 020979 177 AFWPDVHRRIIINL 190 (319)
Q Consensus 177 ~~wp~~~~~~~~~l 190 (319)
++||.+++-+..|.
T Consensus 4 Rf~P~vi~tv~ag~ 17 (26)
T 2amn_A 4 RVWPLVIRTVIAGY 17 (26)
T ss_dssp CSCTTHHHHHHHHH
T ss_pred eeeeeEEEEEeehh
Confidence 57888877766664
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=11.41 E-value=2.4e+02 Score=17.78 Aligned_cols=26 Identities=0% Similarity=0.287 Sum_probs=19.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHH
Q 020979 133 LLGLVYAPVTPILLPFIIVFFAFSYV 158 (319)
Q Consensus 133 ~I~l~YsviaPlIlpf~~~yF~~~~~ 158 (319)
.+.++|+++|-+|--.-++.+++.-+
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999887777777766544
No 10
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=9.02 E-value=4.1e+02 Score=17.19 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=21.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 020979 174 SGAAFWPDVHRRIIINLIISQLLLMGLL 201 (319)
Q Consensus 174 SgG~~wp~~~~~~~~~l~i~Ql~m~g~f 201 (319)
-||.+-...++-++-+++..|+.+.|+-
T Consensus 8 kggi~sa~flk~~~psll~shiL~~Glg 35 (45)
T 2j5d_A 8 KGGIFSAEFLKVFLPSLLLSHLLAIGLG 35 (45)
T ss_dssp CCSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeeehHHHHHHhhHHHHHHHHHhcce
Confidence 4667777777778889999998887763
Done!