Query 020979
Match_columns 319
No_of_seqs 185 out of 679
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 10:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020979.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020979hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtk1 f.23.36.1 (K:10-46) Ph 30.2 16 0.0011 21.2 2.2 25 137-161 5-31 (37)
2 d1iapa_ a.91.1.1 (A:) p115RhoG 23.7 32 0.0023 27.5 3.8 37 68-113 16-52 (190)
3 d2e74d2 f.23.12.1 (D:12-45) IS 4.9 2.9E+02 0.021 15.1 3.5 20 27-46 6-25 (34)
4 d1ppjd2 f.23.11.1 (D:196-241) 4.8 2.8E+02 0.02 16.4 2.9 17 146-162 14-30 (46)
5 d1tm9a_ a.225.1.1 (A:) Hypothe 4.4 1.8E+02 0.013 20.6 1.9 17 151-167 96-112 (137)
6 d2cg7a1 g.27.1.1 (A:109-151) F 4.4 71 0.0052 19.1 -0.3 14 166-179 13-26 (43)
7 d1v54l_ f.23.6.1 (L:) Mitochon 4.4 2.8E+02 0.02 16.4 2.5 14 152-165 31-44 (46)
8 d3cx5h1 f.23.13.1 (H:2-94) Ubi 4.3 1.9E+02 0.014 19.9 2.0 22 145-166 59-80 (93)
9 d1ppjg_ f.23.13.1 (G:) Ubiquin 4.2 3.2E+02 0.023 17.9 3.1 21 145-165 49-69 (75)
10 d1fs1b1 a.157.1.1 (B:86-140) C 4.0 4.1E+02 0.03 16.0 3.3 22 92-113 32-53 (55)
No 1
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=30.21 E-value=16 Score=21.24 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=19.7
Q ss_pred HHhhhhhhH--HHHHHHHHHHHHHHHh
Q 020979 137 VYAPVTPIL--LPFIIVFFAFSYVVFR 161 (319)
Q Consensus 137 ~YsviaPlI--lpf~~~yF~~~~~vyK 161 (319)
+|++..|+| +|..=++|.+.-+||.
T Consensus 5 ay~~f~PivdvlPiIPv~f~lLafVWQ 31 (37)
T d2axtk1 5 AYAIFDPLVDVLPVIPVLFLALAFVWQ 31 (37)
T ss_dssp GGGGCHHHHHHGGGHHHHHHHHHHHHH
T ss_pred hhhhhchHHHHhccHHHHHHHHHHHHH
Confidence 588999995 7777778888777775
No 2
>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.68 E-value=32 Score=27.47 Aligned_cols=37 Identities=8% Similarity=-0.003 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhhHHhHHHHHhHHHHHHHHHHHhhccCChhhHHhh
Q 020979 68 ATFFITYTMVDGWAGIAAEIIRLVPLVIFHLKNTFLVKTDQDRDEA 113 (319)
Q Consensus 68 S~FFi~yii~~~~~~~~~~Llr~~~Li~~~~~~~~~~~TpR~~~~~ 113 (319)
=.=|++|++.+. -+.||++|.+...+...|++|.++|
T Consensus 16 LaVFL~yv~sq~---------DPspLLfyL~td~yk~~~~Kd~rk~ 52 (190)
T d1iapa_ 16 LMALLQHVALQF---------EPGPLLCCLHADMLGSLGPKEAKKA 52 (190)
T ss_dssp HHHHHHHHHHHS---------CSHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHhcC---------CchhhHHHHHHHHHhccChHHHHHH
Confidence 356899999885 6788889988777777788886554
No 3
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.92 E-value=2.9e+02 Score=15.06 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 020979 27 ILFNVFLGSIVTGTALQQLN 46 (319)
Q Consensus 27 ~v~nvflv~~l~gs~~~~l~ 46 (319)
|+.|.+-..++.|+++..+-
T Consensus 6 qfmnlltfgt~tg~alg~ly 25 (34)
T d2e74d2 6 QFMNLLAFGTVTGVALGALY 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhhhh
Confidence 56777777777887776654
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.84 E-value=2.8e+02 Score=16.37 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 020979 146 LPFIIVFFAFSYVVFRH 162 (319)
Q Consensus 146 lpf~~~yF~~~~~vyKy 162 (319)
+.|..+.+++.|++.|+
T Consensus 14 ~~~l~~l~~l~yy~KR~ 30 (46)
T d1ppjd2 14 LLMMGLLLPLVYAMKRH 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555566667776665
No 5
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=4.44 E-value=1.8e+02 Score=20.57 Aligned_cols=17 Identities=12% Similarity=0.491 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhheeEE
Q 020979 151 VFFAFSYVVFRHQVINV 167 (319)
Q Consensus 151 ~yF~~~~~vyKyqllyV 167 (319)
+-|++.|+.|.++++.-
T Consensus 96 iifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 96 IIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHTTCSCC
T ss_pred ehhhHHHHHHHhccccc
Confidence 34666677788887753
No 6
>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.44 E-value=71 Score=19.12 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=10.5
Q ss_pred EEeccCCCCCCccH
Q 020979 166 NVYDQIYESGAAFW 179 (319)
Q Consensus 166 yVy~~~~ESgG~~w 179 (319)
--+++.+|++|.+|
T Consensus 13 e~Wer~~d~~g~m~ 26 (43)
T d2cg7a1 13 DTWRRPHETGGYML 26 (43)
T ss_dssp CEEEEECTTSSSEE
T ss_pred CEEeeccccCCcEE
Confidence 34677889988876
No 7
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.42 E-value=2.8e+02 Score=16.45 Aligned_cols=14 Identities=36% Similarity=0.683 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhhee
Q 020979 152 FFAFSYVVFRHQVI 165 (319)
Q Consensus 152 yF~~~~~vyKyqll 165 (319)
-|+.-+++-|||++
T Consensus 31 gfa~PF~ivRhqLl 44 (46)
T d1v54l_ 31 GFAAPFFIVRHQLL 44 (46)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHh
Confidence 34555566677764
No 8
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.34 E-value=1.9e+02 Score=19.89 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhheeE
Q 020979 145 LLPFIIVFFAFSYVVFRHQVIN 166 (319)
Q Consensus 145 Ilpf~~~yF~~~~~vyKyqlly 166 (319)
+.||++.|.+..|-..++..++
T Consensus 59 ~PPfi~~Y~iy~Wa~~~ne~l~ 80 (93)
T d3cx5h1 59 LIPAGIYWYWWKNGNEYNEFLY 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999888887654
No 9
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.19 E-value=3.2e+02 Score=17.86 Aligned_cols=21 Identities=10% Similarity=0.382 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhee
Q 020979 145 LLPFIIVFFAFSYVVFRHQVI 165 (319)
Q Consensus 145 Ilpf~~~yF~~~~~vyKyqll 165 (319)
+.||.+.|++..|-..+|.-+
T Consensus 49 ~PPfi~~Y~iy~W~~~~~~~~ 69 (75)
T d1ppjg_ 49 APPFVAFYLVYTWGTQEFEKS 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 457889999999988887643
No 10
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.99 E-value=4.1e+02 Score=15.97 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhccCChhhHHhh
Q 020979 92 PLVIFHLKNTFLVKTDQDRDEA 113 (319)
Q Consensus 92 ~Li~~~~~~~~~~~TpR~~~~~ 113 (319)
.+....+......|||.|.++.
T Consensus 32 dl~c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 32 DVTCKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHH
Confidence 3445556566668999987764
Done!