BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020982
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 175/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 328 W--------------------------------------------MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L VLG N L+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVLGVPENALQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A +F
Sbjct: 400 VYNIGPDKVIQATTYF 415
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 254 bits (649), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 176/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 328 W--------------------------------------------MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 400 VYNIGPDKVIQATTHF 415
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 254 bits (649), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 176/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 147 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 206
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 207 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 266
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 267 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 326
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 327 W--------------------------------------------MFHQQALQEYILMCC 342
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 343 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 398
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 399 VYNIGPDKVIQATTHF 414
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 254 bits (649), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 175/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 328 W--------------------------------------------MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L VLG N L+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVLGVPENALQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A +F
Sbjct: 400 VYNIGPDKVIQATTYF 415
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 254 bits (649), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 176/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 328 W--------------------------------------------MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 400 VYNIGPDKVIQATTHF 415
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 254 bits (649), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 176/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 151 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 210
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 211 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 270
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 271 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 330
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 331 W--------------------------------------------MFHQQALQEYILMCC 346
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 347 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 402
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 403 VYNIGPDKVIQATTHF 418
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 254 bits (648), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 176/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 127 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 186
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 187 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 246
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 247 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 306
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 307 W--------------------------------------------MFHQQALQEYILMCC 322
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 323 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 378
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 379 VYNIGPDKVIQATTHF 394
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 254 bits (648), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 176/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 127 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 186
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 187 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 246
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 247 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 306
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 307 W--------------------------------------------MFHQQALQEYILMCC 322
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 323 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 378
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 379 VYNIGPDKVIQATTHF 394
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 254 bits (648), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 176/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 126 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 185
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 186 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 245
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 246 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 305
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 306 W--------------------------------------------MFHQQALQEYILMCC 321
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 322 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 377
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 378 VYNIGPDKVIQATTHF 393
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 254 bits (648), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 140/316 (44%), Positives = 176/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 127 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 186
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 187 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 246
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 247 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 306
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 307 W--------------------------------------------MFHQQALQEYILMCC 322
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 323 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 378
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 379 VYNIGPDKVIQATTHF 394
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 175/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 328 W--------------------------------------------MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTC+CLSGLSI QH + L VLG N L+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCFCLSGLSIAQHF----GSGAMLHDVVLGVPENALQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A +F
Sbjct: 400 VYNIGPDKVIQATTYF 415
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 175/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 328 W--------------------------------------------MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTC+CLSGLSI QH + L VLG N L+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCFCLSGLSIAQHF----GSGAMLHDVVLGVPENALQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A +F
Sbjct: 400 VYNIGPDKVIQATTYF 415
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 251 bits (641), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 175/316 (55%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA T AAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTTAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R G+ +
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH 327
Query: 181 RGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS 240
+FH ALQ Y+L+C
Sbjct: 328 W--------------------------------------------MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 400 VYNIGPDKVIQATTHF 415
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
pdb|3SFX|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 520
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 156/318 (49%), Gaps = 77/318 (24%)
Query: 1 MPHLATTYAAVNALI------SLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEID 54
+PHL TYA+V +L S GG K L + +S F++C K P G F + + GE+D
Sbjct: 137 IPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRC-KRPDGGFVVCEGGEVD 195
Query: 55 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIA------------------GE 96
VR Y + VA++L+I+ ELL NV ++ +CQTYEGG A E
Sbjct: 196 VRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSE 255
Query: 97 PG-----SEAHGGYTFCGLAAMILINEAD------RLDLDALIGWVVFRQG--VE-GGFQ 142
P +EAHGGYT C L + L+ +D +A + W V +QG +E GGF+
Sbjct: 256 PSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFR 315
Query: 143 GRTNKLVDGCYSFWQGG----VFALLRRFHS-IIGESPTPVDQRGAECSIDNTQTTTAXX 197
GRTNKLVDGCYS+W GG L+RR S + +S V + E ++
Sbjct: 316 GRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIP--- 372
Query: 198 XXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCS-QDP--RGGLRDKLRKP 254
P+F+ +ALQ + L+ + QDP GGLRDK K
Sbjct: 373 ---------------------------PIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKR 405
Query: 255 RDYYHTCYCLSGLSICQH 272
D YHTC LSGLSI QH
Sbjct: 406 PDQYHTCNNLSGLSIAQH 423
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHL T +AV L S+ IN KV +++ ++ G+F GEID R + A
Sbjct: 93 PHLLYTLSAVQILTLY---DSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 149
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
++ ++L LD ++ ++LSC ++GG PGSE+H G +C + + ++ +
Sbjct: 150 VATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQ 209
Query: 122 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
++ D L W+ RQ GG GR KL D CYS+W ++ R H I
Sbjct: 210 VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWI 258
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 59 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 118
Y ++V ++ L + + +I SCQ GG++ G + H YT + + L +
Sbjct: 51 YWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS 110
Query: 119 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
+++D ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 111 IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI 162
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHL T +AV L S+ IN KV +++ ++ G+F GEID R + A
Sbjct: 92 PHLLYTLSAVQILTLY---DSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 148
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
++ ++L LD ++ ++LSC ++GG PGSE+H G +C + + ++ +
Sbjct: 149 VATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQ 208
Query: 122 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
++ D L W+ RQ GG GR KL D CYS+W ++ R H I
Sbjct: 209 VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWI 257
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 59 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 118
Y ++V ++ L + + +I SCQ GG++ G + H YT + + L +
Sbjct: 50 YWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS 109
Query: 119 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
+++D ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 110 IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI 161
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTA 61
H+A TY ++ LI LG + L +++ L+ ++ G+F + + E D+R Y A
Sbjct: 121 HIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCA 178
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
+ +LN ++ +YI +Y+ G+A G E+HGG TFCG+A++ L+ + +
Sbjct: 179 SCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE 238
Query: 122 L----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 168
+ +L+ + W + RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 239 VFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 64/217 (29%)
Query: 2 PHLATT-YAAVNALISLGGEKSLPSINRSKVYTFL-KCM----------------KDPSG 43
P+L++T +A N LI ++ INR K+ FL KC + +G
Sbjct: 92 PNLSSTLFALYNLLILKSPYHTI--INRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENG 149
Query: 44 AFRMHDAGEIDVRACYTAISVASILNILD-------------DELLQNVGNYILSCQTYE 90
++ + GE D+R CY A+ + ++ D D L ++ +IL
Sbjct: 150 DYKQY--GEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININ 207
Query: 91 GGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQ--------------- 135
GG + E+H G+TFC +A++ L+N L + W++ RQ
Sbjct: 208 GGFSSTIMDESHLGFTFCAIASLKLLNYPLE-KLKSTKEWLIHRQVDYPENLYPKDGNGD 266
Query: 136 ------------GVE-GGFQGRTNKLVDGCYSFWQGG 159
++ GGF GR NKL D CYS+W G
Sbjct: 267 GNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTG 303
>pdb|1LJP|A Chain A, Crystal Structure Of Beta-Cinnamomin Elicitin
pdb|1LJP|B Chain B, Crystal Structure Of Beta-Cinnamomin Elicitin
pdb|2A8F|A Chain A, Beta-Cinnamomin After Sterol Removal
pdb|2A8F|B Chain B, Beta-Cinnamomin After Sterol Removal
pdb|2AIB|A Chain A, Beta-Cinnamomin In Complex With Ergosterol
pdb|2AIB|B Chain B, Beta-Cinnamomin In Complex With Ergosterol
Length = 98
Score = 27.7 bits (60), Expect = 9.0, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 9 AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGA-FRMHDAGEIDVRACYTAISVASI 67
AA L+S+ E S ++ Y+ L P+ A +++ A AC T I
Sbjct: 10 AAYKTLVSILSESSFSQCSKDSGYSMLTATALPTNAQYKLMCAST----ACNTMIKKIVA 65
Query: 68 LNILDDELLQNVGNYILSCQTYEGGIAGEPGS 99
LN D +L +L TY G + + S
Sbjct: 66 LNPPDCDLTVPTSGLVLDVYTYANGFSSKCAS 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,622,941
Number of Sequences: 62578
Number of extensions: 396680
Number of successful extensions: 724
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 66
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)