BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020982
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/338 (65%), Positives = 256/338 (75%), Gaps = 31/338 (9%)
Query: 1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYT 60
MPHLATTYAAVN LI+LGGEKSL SINR+K+Y F++ MK P+G FRMHD GEIDVRACYT
Sbjct: 92 MPHLATTYAAVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYT 151
Query: 61 AISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 120
AISVAS+LNILDDEL++NVG++ILSCQTYEGG+AGEPGSEAHGGYTFCGLAAMILI E +
Sbjct: 152 AISVASVLNILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVN 211
Query: 121 RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
RLDL L+ WVVFRQG E GFQGRTNKLVDGCYSFWQGG ALL+R HSII D+
Sbjct: 212 RLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSII-------DE 264
Query: 181 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHF--------------------QH 220
+ AE S Q T SD E D SS H +
Sbjct: 265 QMAEAS----QFVTVSDAPEEKECLDGTSSHATSHIRHEGMNESCSSDVKNIGYNFISEW 320
Query: 221 REREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDS 280
R+ EPLFHSIALQ+Y+LLCSQ+ GGLRDK K RD+YH+CYCLSGLS+CQ+SW K DS
Sbjct: 321 RQSEPLFHSIALQQYILLCSQEQDGGLRDKPGKRRDHYHSCYCLSGLSLCQYSWSKRPDS 380
Query: 281 SPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 318
PLP+ V+GPYSN+LEP+HP+FN+VLDRY EAHEFFS+
Sbjct: 381 PPLPKVVMGPYSNLLEPIHPLFNVVLDRYREAHEFFSQ 418
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 58 CYTAI-SVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI 116
CY I S+A + +DD+L N +++ CQ GG AG PG H T+ + +I +
Sbjct: 49 CYWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITL 108
Query: 117 NEADRL---DLDALIGWVVFRQGVEGGFQGRTNKLVD--GCYS 154
L + + L G++ + GGF+ +D CY+
Sbjct: 109 GGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYT 151
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/327 (61%), Positives = 243/327 (74%), Gaps = 8/327 (2%)
Query: 1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYT 60
+PHLATTYAAVNAL++LGG+K+L SINR K+ FL+ MKD SG FRMHD GE+DVRACYT
Sbjct: 155 LPHLATTYAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYT 214
Query: 61 AISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD 120
AISVASILNI+DDEL Q +G+YILSCQTYEGGI GEPGSEAHGGYT+CGLAAMILINE D
Sbjct: 215 AISVASILNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVD 274
Query: 121 RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF-----HSIIGESP 175
RL+LD+L+ W V RQGVE GFQGRTNKLVDGCY+FWQ LL+R H + G S
Sbjct: 275 RLNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDHDVHGSSH 334
Query: 176 TPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCH---FQHREREPLFHSIAL 232
+ D + D + D +DE S G H + +R + +F S+ L
Sbjct: 335 ISEGTNEEHHAHDEDDLEDSDDDDDSDEDNDEDSVNGHRIHHTSTYINRRMQLVFDSLGL 394
Query: 233 QRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYS 292
QRY+LLCS+ P GG RDK RKPRD+YHTCYCLSGLS+ QH+WLKDED+ PL R ++G YS
Sbjct: 395 QRYVLLCSKIPDGGFRDKPRKPRDFYHTCYCLSGLSVAQHAWLKDEDTPPLTRDIMGGYS 454
Query: 293 NVLEPVHPVFNIVLDRYHEAHEFFSRS 319
N+LEPV + NIV+D+Y+EA EFF ++
Sbjct: 455 NLLEPVQLLHNIVMDQYNEAIEFFFKA 481
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 261 bits (666), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 143/316 (45%), Positives = 179/316 (56%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR-------------- 313
Query: 181 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCS 240
+ +QGD H +FH ALQ Y+L+C
Sbjct: 314 --------------------------ALHAQGDPALSMSHW----MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 400 VYNIGPDKVIQATTHF 415
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 261 bits (666), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 143/316 (45%), Positives = 178/316 (56%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERS 267
Query: 122 LDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR-------------- 313
Query: 181 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCS 240
+ +QGD H +FH ALQ Y+L+C
Sbjct: 314 --------------------------ALHAQGDPALSMSHW----MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L VLG N L+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVLGVPENALQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A +F
Sbjct: 400 VYNIGPDKVIQATTYF 415
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 259 bits (663), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/316 (45%), Positives = 178/316 (56%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MHD GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGSFLMHDGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 267
Query: 122 LDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR-------------- 313
Query: 181 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCS 240
+ +QGD +FH ALQ Y+L+C
Sbjct: 314 --------------------------ALHAQGDPALSMSRW----MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L VLG N L+P HP
Sbjct: 344 QCPTGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVLGVPENALQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI D+ +A F
Sbjct: 400 VYNIGPDKVIQATMHF 415
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/316 (44%), Positives = 179/316 (56%), Gaps = 49/316 (15%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHLA TYAAVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A
Sbjct: 148 PHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCA 207
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
SVAS+ NI+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ +
Sbjct: 208 ASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERS 267
Query: 122 LDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+L +L+ WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 268 LNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR-------------- 313
Query: 181 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCS 240
+ +QGD H +FH ALQ Y+L+C
Sbjct: 314 --------------------------ALHAQGDPALSMSHW----MFHQQALQEYILMCC 343
Query: 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHP 300
Q P GGL DK K RD+YHTCYCLSGLSI QH + L V+G NVL+P HP
Sbjct: 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDMVMGVPENVLQPTHP 399
Query: 301 VFNIVLDRYHEAHEFF 316
V+NI ++ +A F
Sbjct: 400 VYNIGPEKVIQATTHF 415
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 214 bits (545), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 47/306 (15%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI 62
H+ +T+AAV+AL +G E+S +I+R +Y FL MK GAF D GE D R Y AI
Sbjct: 147 HVVSTFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTSEDGGEYDSRTTYCAI 206
Query: 63 SVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL 122
+VAS+LNIL EL + V +++LSCQTYEGG P +EAHGGYTFC +AA+ ++N ++
Sbjct: 207 AVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALSILNSLHKI 266
Query: 123 DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRG 182
D+++L W+ +RQ +GGF+GRTNKLVD CYS+WQG V+ +++ + + +
Sbjct: 267 DMNSLHRWITYRQSNDGGFEGRTNKLVDTCYSYWQGAVYIIIQSYFNYYKKQQQ------ 320
Query: 183 AECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLL-LCSQ 241
+GDG +GD+ +E LF+ LQ Y++ C Q
Sbjct: 321 ----------------DDGDG------KEGDQ------QEEGLLFNQAKLQEYVIRFCQQ 352
Query: 242 DPR--GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAV--LGPYSNVLEP 297
+ G D + +DYYHTCY LSG+S+ Q+ + + +A+ L ++N E
Sbjct: 353 SDKKYSGFSDHPHRGKDYYHTCYGLSGISLSQY--------NEIGKAIQSLNTFTNTFEQ 404
Query: 298 VHPVFN 303
P N
Sbjct: 405 PSPPIN 410
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 167/327 (51%), Gaps = 66/327 (20%)
Query: 1 MPHLATTYAAVNAL-ISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-HDAGEIDVRAC 58
+ HLA+TYAA+NAL + + I+R +Y +L +K+P+G F+ + GE+D R
Sbjct: 154 LSHLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGI 213
Query: 59 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPG-SEAHGGYTFCGLAAMILIN 117
Y A+S+A++LNIL +EL + V NY+ +CQ YEGG P EAHGGYTFC A++ ++
Sbjct: 214 YCALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILR 273
Query: 118 EADRLDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPT 176
D+++++ L+ W RQ E GF GR+NKLVDGCYSFW GG A+L F
Sbjct: 274 SMDQINVEKLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILEAF--------- 324
Query: 177 PVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYL 236
G C +H AL+ Y+
Sbjct: 325 -----------------------------------GYGQCFNKH----------ALRDYI 339
Query: 237 LLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSP-----LPRAVLGP 290
L C Q+ + GLRDK D+YHT YCL GL++ + S+ + SP P ++G
Sbjct: 340 LYCCQEKEQPGLRDKPGAHSDFYHTNYCLLGLAVAESSYSCTPNDSPHNIKCTPDRLIG- 398
Query: 291 YSNVLEPVHPVFNIVLDRYHEAHEFFS 317
S+ L V+PV+ + ++ + +F
Sbjct: 399 -SSKLTDVNPVYGLPIENVRKIIHYFK 424
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 164 bits (415), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 140/269 (52%), Gaps = 50/269 (18%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI 62
HL +TYA++ ++ + I R ++Y +L +K+P G+FR+++ GE D R+ Y A+
Sbjct: 104 HLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRVNNEGESDARSVYAAV 163
Query: 63 SVASILNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
V+S++ I +DD L + ++ CQTYEGG++G P +EAHGGYTFC LAA+ L+ D
Sbjct: 164 CVSSLVGISMDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYTFCALAAIALLGGLDN 223
Query: 122 LDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQ 180
L+ L W+V RQ GF GR+NKLVDGCYS+W G +
Sbjct: 224 LNEIKLSTWLVQRQDPALYGFSGRSNKLVDGCYSWWVGASHVI----------------- 266
Query: 181 RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSI-ALQRYLLLC 239
V+ G GS+ H+ LF++ L Y+L C
Sbjct: 267 -----------------VASGYGSA-------------SHKSLPNLFYNPEKLLGYILQC 296
Query: 240 SQDPRGGLRDKLRKPRDYYHTCYCLSGLS 268
Q GGLRDK K D YHTCYCL GLS
Sbjct: 297 CQSTSGGLRDKPPKRPDQYHTCYCLLGLS 325
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 121/287 (42%), Gaps = 62/287 (21%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI 62
HL +T +AV LI +L I+ + V ++ ++ G+F GE+D R Y AI
Sbjct: 98 HLLSTLSAVQILIQY---DALDKIDINSVVDYVVKLQREDGSFVGDQWGEVDTRFSYAAI 154
Query: 63 SVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL 122
S+L LD + YILSCQ ++GG PG+E+H G F + A+ ++NE +++
Sbjct: 155 MCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEINKI 214
Query: 123 DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRG 182
D+D L W+ RQ GG GR K D CYS+W + + R H
Sbjct: 215 DIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAIDRLHW------------- 261
Query: 183 AECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD 242
IDN + L+ Y+L C +
Sbjct: 262 ----IDNDK----------------------------------------LKSYILKCQDN 277
Query: 243 PRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLG 289
GG+ DK D +HT + + GLS+ + KD+ S P LG
Sbjct: 278 ETGGIADKPGDIPDVFHTFFGICGLSLMGY--FKDQIESIDPVYALG 322
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 5/179 (2%)
Query: 7 TYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVAS 66
+YAA+ L L KSL IN K ++ ++ G F E +T + S
Sbjct: 150 SYAAIMCLSLL---KSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALS 206
Query: 67 ILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDA 126
ILN ++ + +G ++ Q GG+ G P + Y++ L+A+ I+ +D D
Sbjct: 207 ILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAIDRLHWIDNDK 266
Query: 127 LIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAE 184
L +++ Q E GG + + D ++F+ +L+ F I ES PV G +
Sbjct: 267 LKSYILKCQDNETGGIADKPGDIPDVFHTFFGICGLSLMGYFKDQI-ESIDPVYALGTK 324
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 73 DELLQN-VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWV 131
D+L +N V ++LSCQ GG G + H T + +I + D++D+++++ +V
Sbjct: 68 DKLDKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYV 127
Query: 132 VFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
V Q +G F G VD +S+ +LL+ I
Sbjct: 128 VKLQREDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKI 166
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 13/177 (7%)
Query: 3 HLATTYAAVNALISLGGEKSLPSIN--------RSKVYTFLKCMKDPSGAFRMHDAGEID 54
H+ +T +A+ L E ++ + N R ++ F+ ++ P G+F+ GE+D
Sbjct: 89 HILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLPDGSFQGDKYGEVD 148
Query: 55 VRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 114
R YTA+S S+LN L D + +I+ C ++GG PGSE+H F + A+
Sbjct: 149 TRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTCVGALA 208
Query: 115 LINEADRLDLD----ALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRR 166
++N+ D LD++ LI W+ RQ + GGF GR KL D CYS+W ++L+R
Sbjct: 209 IMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDVCYSWWVLSSLSILKR 265
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 109/285 (38%), Gaps = 35/285 (12%)
Query: 8 YAAVNALISLGGEKSLPSINRSKVYTFLK-CMKDPSGAFRMHDAGEIDVRACYTAISVAS 66
Y V ALI++ L ++ + V ++ C D +GAF + + + +A+ V
Sbjct: 45 YWGVTALITMN---ELSALAQQDVIDYIMLCWDDKTGAFGSFPKHDGHILSTLSALQVLK 101
Query: 67 I----LNILDDELLQNVGN-------YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMIL 115
I L +L+D + GN +I Q +G G+ E + + ++++ L
Sbjct: 102 IYDQELTVLNDNNESSNGNKRERLIKFITGLQLPDGSFQGDKYGEVDTRFVYTAVSSLSL 161
Query: 116 INEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESP 175
+N D +++ +GGF F G A++ + +
Sbjct: 162 LNALTDSIADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTCVGALAIMNKLDLL----- 216
Query: 176 TPVDQRGAECSIDNTQTTTASDVSEG-DGSSDEISSQGDEHCH-------FQHREREPLF 227
D + + + T S G +G +++ + C+ +R+
Sbjct: 217 ---DVENKKVKLIDWLTERQVLPSGGFNGRPEKLP----DVCYSWWVLSSLSILKRKNWV 269
Query: 228 HSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQH 272
L+ ++L C GG D+ D YHTC+ ++GLS+ +
Sbjct: 270 DLKILENFILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLSLIDY 314
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTA 61
H+A TY ++ L+ LG + L +N+ L+ ++ G+F + + E D+R Y A
Sbjct: 121 HIAMTYTGLSCLVILGDD--LSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCA 178
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
+ +LN ++ NYI +Y+ G+A G E+HGG TFCG+A++ L+ + +
Sbjct: 179 SCICYMLNNWSGMDMKKAINYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE 238
Query: 122 L----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 168
+ +L+ + W + RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 239 VFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHL T +AV L S+ IN KV +++ ++ G+F GEID R + A
Sbjct: 93 PHLLYTLSAVQILTLY---DSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 149
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
++ ++L LD ++ ++LSC ++GG PGSE+H G +C + + ++ +
Sbjct: 150 VATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQ 209
Query: 122 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
++ D L W+ RQ GG GR KL D CYS+W ++ R H I
Sbjct: 210 VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWI 258
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 23/257 (8%)
Query: 59 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 118
Y ++V ++ L + + +I SCQ GG++ G + H YT + + L +
Sbjct: 51 YWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS 110
Query: 119 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPV 178
+++D ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 111 IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI-------- 162
Query: 179 DQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIA--LQRYL 236
E +I+ + D G E S G +C H + L +
Sbjct: 163 ---NVEKAIEFVLSCMNFDGGFGCRPGSE-SHAGQIYCCTGFLAITSQLHQVNSDLLGWW 218
Query: 237 LLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC-QHSWLKDEDSSPLPRAV----LGPY 291
L Q P GGL + K D ++ + L+ L I + W+ E A G +
Sbjct: 219 LCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGF 278
Query: 292 S----NVLEPVHPVFNI 304
+ ++++P H +F I
Sbjct: 279 ADRPGDMVDPFHTLFGI 295
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHL T +AV L S+ IN KV +++ ++ G+F GEID R + A
Sbjct: 101 PHLLYTLSAVQILTLY---DSVHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCA 157
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
++ ++L LD ++ ++LSC ++GG PGSE+H G +C + + ++ +
Sbjct: 158 VATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQ 217
Query: 122 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
++ D L W+ RQ GG GR KL D CYS+W ++ R H I
Sbjct: 218 VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWI 266
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 118/302 (39%), Gaps = 40/302 (13%)
Query: 23 LPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN- 81
L +NR ++ F+K + G D YT +S IL + D + NV
Sbjct: 71 LHRMNREEILVFIKSCQHECGGISASIGH--DPHLLYT-LSAVQILTLYDSVHVINVDKV 127
Query: 82 --YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEG 139
Y+ S Q +G AG+ E ++FC +A + L+ + D ++++ I +V+ +G
Sbjct: 128 VAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDG 187
Query: 140 GFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGE-SPTPVDQRGAECSIDNTQTTTASDV 198
GF R + G A+ + H + + + +R N + DV
Sbjct: 188 GFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 247
Query: 199 SEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYY 258
+ G H+ RE+ L+ ++L C + GG D+ D +
Sbjct: 248 CYSWWVLASLKIIG--RLHWIDREK--------LRSFILACQDEETGGFADRPGDMVDPF 297
Query: 259 HTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNI---VLDRYHEAHEF 315
HT + ++GLS+ L +E ++PV PVF + VL R + E
Sbjct: 298 HTLFGIAGLSL-----LGEEQ---------------IKPVSPVFCMPEEVLQRVNVQPEL 337
Query: 316 FS 317
S
Sbjct: 338 VS 339
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 23/257 (8%)
Query: 59 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 118
Y ++V ++ L + + +I SCQ GGI+ G + H YT + + L +
Sbjct: 59 YWGLTVMDLMGQLHRMNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDS 118
Query: 119 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPV 178
+++D ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 119 VHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI-------- 170
Query: 179 DQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIA--LQRYL 236
E +I+ + D G E S G +C H + L +
Sbjct: 171 ---NVEKAIEFVLSCMNFDGGFGCRPGSE-SHAGQIYCCTGFLAITSQLHQVNSDLLGWW 226
Query: 237 LLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC-QHSWLKDEDSSPLPRAV----LGPY 291
L Q P GGL + K D ++ + L+ L I + W+ E A G +
Sbjct: 227 LCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGF 286
Query: 292 S----NVLEPVHPVFNI 304
+ ++++P H +F I
Sbjct: 287 ADRPGDMVDPFHTLFGI 303
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI 62
HL TT +AV L + L + ++ +F++ + G+F+ GE+D R YTA+
Sbjct: 84 HLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSFQGDRFGEVDTRFVYTAL 143
Query: 63 SVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL 122
S SIL L E++ +++L C ++GG P +E+H F L A+ + N+ D L
Sbjct: 144 SALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIANKLDML 203
Query: 123 DLDAL--IG-WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPT 176
D L IG W+ RQ EGG GR +KL D CYS+W A++ R I E T
Sbjct: 204 SDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLAIIGRLDWINYEKLT 260
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/274 (18%), Positives = 102/274 (37%), Gaps = 19/274 (6%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR---MHDAGEIDVRACY 59
L Y + AL L ++ + + L C D GAF HDA + +
Sbjct: 35 RLNGIYWGLTALCVLDSPETF--VKEEVISFVLSCWDDKYGAFAPFPRHDAHLLTTLSAV 92
Query: 60 TAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA 119
++ L++L + + ++I Q +G G+ E + + L+A+ ++ E
Sbjct: 93 QILATYDALDVLGKDRKVRLISFIRGNQLEDGSFQGDRFGEVDTRFVYTALSALSILGEL 152
Query: 120 DRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVD 179
+D + +V+ +GGF N +F G A+ + + + +
Sbjct: 153 TSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIANKLDMLSDDQLEEIG 212
Query: 180 QRGAECSID----NTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRY 235
E + N + + DV ++ G R + L +
Sbjct: 213 WWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLAIIG----------RLDWINYEKLTEF 262
Query: 236 LLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSI 269
+L C + +GG+ D+ D +HT + ++GLS+
Sbjct: 263 ILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSL 296
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI 62
H A + + AL L ++ +L + P G + DV + +
Sbjct: 183 HAAQAFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVL 242
Query: 63 SVASILNILDDELLQNVGNYILSCQ-TYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
S +I+ LD + + +IL CQ +GGI+ P +E +T G+A + L+ +
Sbjct: 243 SSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLMGYDNL 302
Query: 122 LDLDAL 127
+ +D +
Sbjct: 303 VPIDPI 308
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHL T +AV L S+ I+ +KV ++K ++ G+F GEID R + A
Sbjct: 93 PHLLYTLSAVQILTLY---DSINVIDVNKVVEYVKGLQKEDGSFAGDIWGEIDTRFSFCA 149
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
++ ++L LD ++ ++LSC ++GG PGSE+H G +C + + ++ +
Sbjct: 150 VATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQ 209
Query: 122 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
++ D L W+ RQ GG GR KL D CYS+W ++ R H I
Sbjct: 210 VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWI 258
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 117/302 (38%), Gaps = 40/302 (13%)
Query: 23 LPSINRSKVYTFLKCMKDPSGAFRM---HDAGEIDVRACYTAISVASILNILDDELLQNV 79
L +NR ++ F+K + G HD + + +++ +N++D + V
Sbjct: 63 LHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVID---VNKV 119
Query: 80 GNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEG 139
Y+ Q +G AG+ E ++FC +A + L+ + D ++++ I +V+ +G
Sbjct: 120 VEYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDG 179
Query: 140 GFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGE-SPTPVDQRGAECSIDNTQTTTASDV 198
GF R + G A+ + H + + + +R N + DV
Sbjct: 180 GFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239
Query: 199 SEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYY 258
+ G H+ RE+ L+ ++L C + GG D+ D +
Sbjct: 240 CYSWWVLASLKIIG--RLHWIDREK--------LRNFILACQDEETGGFADRPGDMVDPF 289
Query: 259 HTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNI---VLDRYHEAHEF 315
HT + ++GLS+ +K PV+PVF + VL R + E
Sbjct: 290 HTLFGIAGLSLLGEEQIK--------------------PVNPVFCMPEEVLQRVNVQPEL 329
Query: 316 FS 317
S
Sbjct: 330 VS 331
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA 61
PHL T +AV L S+ I+ +KV +++ ++ G+F GEID R + A
Sbjct: 93 PHLLYTLSAVQILTLY---DSINVIDINKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCA 149
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
++ ++L LD ++ ++LSC ++GG PGSE+H G +C + + ++ +
Sbjct: 150 VATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQ 209
Query: 122 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
++ D L W+ RQ GG GR KL D CYS+W ++ R H I
Sbjct: 210 VNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWI 258
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 23/257 (8%)
Query: 59 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 118
Y ++V ++ L + + +I SCQ GGI+ G + H YT + + L +
Sbjct: 51 YWGLTVMDLMGQLHRMNREEILTFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDS 110
Query: 119 ADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPV 178
+ +D++ ++ +V Q +G F G +D +SF ALL + +I
Sbjct: 111 INVIDINKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI-------- 162
Query: 179 DQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIA--LQRYL 236
E +I+ + D G E S G +C H + L +
Sbjct: 163 ---NVEKAIEFVLSCMNFDGGFGCRPGSE-SHAGQIYCCTGFLAITSQLHQVNSDLLGWW 218
Query: 237 LLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC-QHSWLKDEDSSPLPRAV----LGPY 291
L Q P GGL + K D ++ + L+ L I + W+ E A G +
Sbjct: 219 LCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGF 278
Query: 292 S----NVLEPVHPVFNI 304
+ ++++P H +F I
Sbjct: 279 ADRPGDMVDPFHTLFGI 295
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTA 61
H+A TY ++ L+ LG + L +N+ L+ ++ G+F + + E D+R Y A
Sbjct: 121 HIAMTYTGLSCLVILGDD--LSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCA 178
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
+ +LN ++ YI +Y+ G+A G E+HGG TFCG+A++ L+ + +
Sbjct: 179 SCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE 238
Query: 122 L----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 168
+ +L+ + W + RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 239 VFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTA 61
H+A TY ++ LI LG + L +++ L+ ++ G+F + + E D+R Y A
Sbjct: 121 HIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCA 178
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
+ +LN ++ +YI +Y+ G+A G E+HGG TFCG+A++ L+ + +
Sbjct: 179 SCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE 238
Query: 122 L----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 168
+ +L+ + W + RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 239 VFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTA 61
H+A TY ++ LI LG + L +++ L+ ++ G+F + + E D+R Y A
Sbjct: 121 HIAMTYTGLSCLIILGDD--LGRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCA 178
Query: 62 ISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121
+ +LN ++ +YI +Y+ G+A G E+HGG TFCG+A++ L+ + +
Sbjct: 179 SCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE 238
Query: 122 L----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 168
+ +L+ + W + RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 239 VFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI 62
H+ T AV L L SL +++ KV +++ +++ G+ + GEID R Y+ I
Sbjct: 80 HITNTVYAVQVLAML---DSLHVVDKDKVASYIIGLQNEDGSMKGDRWGEIDARFLYSGI 136
Query: 63 SVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL 122
+ +IL LD ++++ C ++GG PG+E+HG F +AA+ ++N+ D +
Sbjct: 137 NCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFTCVAALKILNKLDLI 196
Query: 123 DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
D + L W+ RQ GG GR KL D CY +W A++ + I
Sbjct: 197 DEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGKLDWI 244
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 105/271 (38%), Gaps = 16/271 (5%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI 62
H++ Y + + L K I++ ++ +FL SG F + + + A+
Sbjct: 32 HVSAIYWSCMSFWLL---KKKDQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAV 88
Query: 63 SVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL 122
V ++L+ L V +YI+ Q +G + G+ E + + G+ + ++ + D L
Sbjct: 89 QVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGDRWGEIDARFLYSGINCLAILGKLDYL 148
Query: 123 DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGES-PTPVDQR 181
+ + + W++ +GGF G F +L + I E + +R
Sbjct: 149 NKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFTCVAALKILNKLDLIDEELLGWWISER 208
Query: 182 GAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 241
+ N + D G ++ G +R L LL +Q
Sbjct: 209 QVKGGGLNGRPEKLPDSCYGWWDLSPLAIIG----KLDWIDRNQLID-------FLLGTQ 257
Query: 242 DP-RGGLRDKLRKPRDYYHTCYCLSGLSICQ 271
D GG D+ D YHTC+ L+GLS+ Q
Sbjct: 258 DADSGGFADRKEDATDVYHTCFSLAGLSLLQ 288
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR---MHDAGEIDVRAC 58
P LA T ++ L+ LG +L I+R + F++ K G FR + + D+R
Sbjct: 95 PQLAGTVFSICCLLFLG--DNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQL 152
Query: 59 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI-- 116
Y A ++AS+L+ + L ++ YI SCQ YEGG + P EAH G TFC LA+ LI
Sbjct: 153 YMATTIASLLDFSLSDPLCSI-QYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILK 211
Query: 117 ----------NEADRL-----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 161
N++ L ++ LI W+ RQ GG GRTNK VD CY++W
Sbjct: 212 MIPNSSLNTSNQSYNLMDCVPKVERLIRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSL 271
Query: 162 ALL 164
LL
Sbjct: 272 KLL 274
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI 62
HL T AV LI S+ + + ++K ++ G+F +GE+D R ++
Sbjct: 100 HLLHTLCAVQTLIIF---NSIEKADADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSL 156
Query: 63 SVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL 122
+ +L L + + +++ C +GG PGSE+H G +C + A+ + D +
Sbjct: 157 ATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEI 216
Query: 123 DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
D D W+ FRQ GG GR KL D CYS+W A+L R + I
Sbjct: 217 DRDRTAEWLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFI 264
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 100/259 (38%), Gaps = 39/259 (15%)
Query: 50 AGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCG 109
A + V Y ++ + L+ + + NY+L C+ +GG PG ++H +T C
Sbjct: 48 AEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCA 107
Query: 110 LAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHS 169
+ +I+ N ++ D D + +V Q +G F G + VD ++ LL R +
Sbjct: 108 VQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLST 167
Query: 170 IIGESPTPVDQR------------GAE-------CSIDNTQTTTASDVSEGDGSSDEISS 210
+ +S R G+E C + D + D +++ ++
Sbjct: 168 LNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAF 227
Query: 211 QGDEHCHFQHR-EREP-------------------LFHSIALQRYLLLCSQDPRGGLRDK 250
+ + R E+ P S A+++++ C D GG D+
Sbjct: 228 RQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADR 287
Query: 251 LRKPRDYYHTCYCLSGLSI 269
D +HT + ++ LS+
Sbjct: 288 PGDCADPFHTVFGIAALSL 306
Score = 38.5 bits (88), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 26/128 (20%)
Query: 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVR------ 56
H Y V AL G L I+R + +L AFR D+G ++ R
Sbjct: 196 HSGQIYCCVGALAIAG---RLDEIDRDRTAEWL--------AFRQCDSGGLNGRPEKLPD 244
Query: 57 ACYTAISVASI-----LNILDDELLQNVGNYILSCQTYE-GGIAGEPGSEAHGGYTFCGL 110
CY+ +AS+ LN +D + ++ +I +CQ E GG A PG A +T G+
Sbjct: 245 VCYSWWVLASLAILGRLNFIDSDAMKK---FIYACQDDETGGFADRPGDCADPFHTVFGI 301
Query: 111 AAMILINE 118
AA+ L +
Sbjct: 302 AALSLFGD 309
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 4/157 (2%)
Query: 23 LPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY 82
L ++N FL + G F E Y + +I LD+ +
Sbjct: 165 LSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEW 224
Query: 83 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVE-GGF 141
+ Q GG+ G P Y++ LA++ ++ + +D DA+ ++ Q E GGF
Sbjct: 225 LAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGF 284
Query: 142 QGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPV 178
R D ++ + A L F ES P+
Sbjct: 285 ADRPGDCADPFHTVFG---IAALSLFGDDTLESVDPI 318
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFL-KCMKDPSGAFR-MHDAGEIDVRAC 58
+P TY A+ L LG + S +N+ + L K ++ GA + G+ D+R
Sbjct: 112 LPSTPNTYCALLILRILGDDFS--GVNKKAIIDSLRKRQRESDGAISGSPNVGDYDLRHL 169
Query: 59 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 118
++A +++ IL+ ++ +YI SC +YE P EAHGG T+C +A++ L+
Sbjct: 170 FSACAISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGR 229
Query: 119 ADRLD--LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 170
D L+ + L W+V +Q GF GRTNK D CY+FW G ++ R+ I
Sbjct: 230 LDVLEPFKEQLTFWLVKKQIT--GFCGRTNKDPDTCYAFWIGASLMMIDRYDLI 281
>sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1
SV=2
Length = 376
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 51/246 (20%)
Query: 1 MPHLAT-----TYAAVNALISLGGEKSLPSI--NRSKVYTFLKCMKDPSGAF------RM 47
+PH T T A+ ++I L + +I RS KC + G+F +
Sbjct: 95 IPHATTINLPNTLFALLSMIMLRDYEYFETILDKRSLARFVSKCQRPDRGSFVSCLDYKT 154
Query: 48 HDAGEID---VRACYTAISVASILNILDDELL------QNVGNYILSCQTYEGGIAGEPG 98
+ +D +R CY A+++ I E + + YI+S Q Y G
Sbjct: 155 NCGSSVDSDDLRFCYIAVAILYICGCRSKEDFDEYIDTEKLLGYIMSQQCYNGAFGAH-- 212
Query: 99 SEAHGGYTFCGLAAMILINEADRLD---LDALIGWVVFRQ-------------------G 136
+E H GYT C L+ + L++ ++L + I W++ RQ
Sbjct: 213 NEPHSGYTSCALSTLALLSSLEKLSDKFKEDTITWLLHRQVSSHGCMKFESELNASYDQS 272
Query: 137 VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAS 196
+GGFQGR NK D CY+FW LL + ++ ++ + +D TQ T
Sbjct: 273 DDGGFQGRENKFADTCYAFWCLNSLHLLTKDWKMLCQTELVTNYL-----LDRTQKTLTG 327
Query: 197 DVSEGD 202
S+ D
Sbjct: 328 GFSKND 333
>sp|Q0WKY2|CCR4E_ARATH Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis
thaliana GN=CCR4-5 PE=2 SV=2
Length = 454
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 111 AAMILINEADRLD-LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 168
A+++ + E DR D LD L+ +G G + RT + DGC FW+ +F LL H
Sbjct: 146 ASILCLQEVDRFDDLDVLLK----NRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQH 200
>sp|P40017|YAT2_YEAST Carnitine O-acetyltransferase YAT2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YAT2 PE=1 SV=1
Length = 923
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 167 FHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHRERE 224
F ++ G + +PV QRG + D + TASD+ + D SSDE + F R+R+
Sbjct: 174 FLNLFGTTRSPVFQRGEVENFDLNKPYTASDLEDPDYSSDEDDNDEPTQKDFDDRKRK 231
>sp|Q9LS39|CCR4C_ARATH Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis
thaliana GN=CCR4-3 PE=2 SV=2
Length = 448
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 113 MILINEADR-LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 166
+I + E D+ DL +++ + G G ++ RT VDGC FW+ F +L R
Sbjct: 157 IISMQEVDKYFDLFSMME----KAGYAGSYKRRTGDNVDGCAMFWKADRFGVLER 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,475,358
Number of Sequences: 539616
Number of extensions: 5678737
Number of successful extensions: 11393
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11262
Number of HSP's gapped (non-prelim): 86
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)