Query 020982
Match_columns 319
No_of_seqs 169 out of 1265
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020982.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020982hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02710 farnesyltranstransfer 100.0 2.3E-65 5.1E-70 495.9 27.1 307 1-318 118-437 (439)
2 KOG0365 Beta subunit of farnes 100.0 1.5E-64 3.2E-69 463.8 18.9 272 1-319 146-418 (423)
3 PLN02710 farnesyltranstransfer 100.0 4E-60 8.8E-65 459.4 17.4 249 2-310 70-389 (439)
4 COG5029 CAL1 Prenyltransferase 100.0 1.2E-57 2.7E-62 414.9 22.1 239 2-317 102-341 (342)
5 PLN03201 RAB geranylgeranyl tr 100.0 4E-57 8.6E-62 427.4 19.7 245 3-310 36-291 (316)
6 PLN03201 RAB geranylgeranyl tr 100.0 1.6E-56 3.4E-61 423.3 23.5 232 2-313 83-314 (316)
7 cd02893 FTase Protein farnesyl 100.0 4.3E-57 9.4E-62 424.4 19.5 248 2-309 25-298 (299)
8 KOG0366 Protein geranylgeranyl 100.0 3.4E-58 7.3E-63 408.6 8.9 270 23-309 15-300 (329)
9 cd02895 GGTase-I Geranylgerany 100.0 3.6E-56 7.8E-61 419.5 19.1 251 2-309 25-306 (307)
10 cd02895 GGTase-I Geranylgerany 100.0 9E-55 1.9E-59 410.0 21.7 210 2-270 90-307 (307)
11 cd02894 GGTase-II Geranylgeran 100.0 5E-54 1.1E-58 401.8 18.9 245 2-309 28-286 (287)
12 KOG0366 Protein geranylgeranyl 100.0 1.3E-53 2.9E-58 379.2 20.3 232 2-313 93-324 (329)
13 KOG0367 Protein geranylgeranyl 100.0 3.1E-53 6.8E-58 382.7 20.7 235 2-315 103-344 (347)
14 cd02893 FTase Protein farnesyl 100.0 9.6E-53 2.1E-57 395.0 23.1 226 1-270 73-299 (299)
15 cd02894 GGTase-II Geranylgeran 100.0 2.5E-51 5.4E-56 383.6 22.5 209 2-270 77-287 (287)
16 cd02890 PTase Protein prenyltr 100.0 9E-51 1.9E-55 379.1 19.3 246 2-309 25-285 (286)
17 COG5029 CAL1 Prenyltransferase 100.0 2.1E-50 4.5E-55 367.7 11.4 251 2-314 53-318 (342)
18 KOG0365 Beta subunit of farnes 100.0 9.9E-50 2.2E-54 366.0 14.7 250 2-311 98-370 (423)
19 cd02890 PTase Protein prenyltr 100.0 2.2E-48 4.7E-53 363.0 22.2 211 2-270 75-286 (286)
20 KOG0367 Protein geranylgeranyl 100.0 2.4E-47 5.2E-52 344.5 15.9 252 2-310 37-319 (347)
21 cd00688 ISOPREN_C2_like This g 99.9 7.9E-24 1.7E-28 193.7 21.4 209 2-269 80-299 (300)
22 cd00688 ISOPREN_C2_like This g 99.9 1.7E-23 3.6E-28 191.6 18.3 246 2-308 25-298 (300)
23 PF13249 Prenyltrans_2: Prenyl 99.8 1.3E-19 2.9E-24 145.4 8.4 108 32-142 1-112 (113)
24 PF13249 Prenyltrans_2: Prenyl 99.7 8.2E-17 1.8E-21 129.1 8.7 85 80-167 1-88 (113)
25 cd02889 SQCY Squalene cyclase 99.6 1.7E-14 3.7E-19 137.7 20.1 213 2-273 23-294 (348)
26 cd02892 SQCY_1 Squalene cyclas 99.6 6.9E-14 1.5E-18 144.2 20.0 214 2-273 306-580 (634)
27 TIGR03463 osq_cycl 2,3-oxidosq 99.6 6.8E-14 1.5E-18 143.8 19.8 210 5-273 307-580 (634)
28 cd02889 SQCY Squalene cyclase 99.6 7.5E-14 1.6E-18 133.2 16.2 160 5-165 92-292 (348)
29 cd02892 SQCY_1 Squalene cyclas 99.6 7.2E-14 1.6E-18 144.0 16.8 162 2-164 372-577 (634)
30 TIGR01507 hopene_cyclase squal 99.5 8.1E-13 1.8E-17 135.8 21.6 212 2-273 314-574 (635)
31 COG1689 Uncharacterized protei 99.5 1.4E-13 3.1E-18 120.7 12.8 148 4-165 123-272 (274)
32 TIGR03463 osq_cycl 2,3-oxidosq 99.5 1.1E-13 2.4E-18 142.2 13.9 143 2-145 448-606 (634)
33 COG1689 Uncharacterized protei 99.5 2.4E-13 5.2E-18 119.2 12.8 184 25-276 5-230 (274)
34 TIGR01787 squalene_cyclas squa 99.5 2.3E-12 5.1E-17 132.3 17.4 163 2-165 363-562 (621)
35 TIGR01787 squalene_cyclas squa 99.4 5E-12 1.1E-16 129.9 19.4 211 2-273 294-564 (621)
36 PLN02993 lupeol synthase 99.4 9.7E-12 2.1E-16 128.8 19.6 214 2-273 416-696 (763)
37 PLN02993 lupeol synthase 99.4 1.5E-12 3.2E-17 134.8 13.4 141 2-143 561-722 (763)
38 TIGR01507 hopene_cyclase squal 99.4 2.5E-12 5.4E-17 132.3 14.2 139 3-144 450-599 (635)
39 PLN03012 Camelliol C synthase 99.4 2.6E-12 5.7E-17 132.8 13.2 140 3-143 562-722 (759)
40 PF00432 Prenyltrans: Prenyltr 99.4 6E-13 1.3E-17 89.6 5.4 44 74-117 1-44 (44)
41 PF00432 Prenyltrans: Prenyltr 99.4 3.4E-13 7.4E-18 90.8 4.1 44 122-165 1-44 (44)
42 PLN03012 Camelliol C synthase 99.3 1.1E-10 2.3E-15 121.0 19.6 214 2-273 416-696 (759)
43 cd02896 complement_C3_C4_C5 Pr 99.0 2E-08 4.3E-13 94.6 18.1 106 31-136 57-184 (297)
44 PF13243 Prenyltrans_1: Prenyl 99.0 2E-10 4.3E-15 91.6 3.8 104 29-136 2-107 (109)
45 cd02897 A2M_2 Proteins similar 98.9 1.2E-07 2.6E-12 88.8 19.0 111 26-136 42-174 (292)
46 cd02896 complement_C3_C4_C5 Pr 98.7 5E-07 1.1E-11 85.1 15.4 129 2-143 79-226 (297)
47 PF13243 Prenyltrans_1: Prenyl 98.5 6.6E-08 1.4E-12 76.9 3.3 66 77-144 2-68 (109)
48 KOG0497 Oxidosqualene-lanoster 98.5 6.4E-07 1.4E-11 90.6 10.3 137 3-143 561-721 (760)
49 cd02891 A2M_like Proteins simi 98.5 1.1E-06 2.5E-11 81.2 11.3 109 28-136 51-172 (282)
50 cd02897 A2M_2 Proteins similar 98.4 1.5E-05 3.4E-10 74.6 16.8 128 2-142 78-218 (292)
51 cd02891 A2M_like Proteins simi 98.2 8.4E-06 1.8E-10 75.4 9.8 91 76-166 51-154 (282)
52 KOG0497 Oxidosqualene-lanoster 97.8 0.00024 5.2E-09 72.4 13.0 143 24-167 507-695 (760)
53 PF07678 A2M_comp: A-macroglob 97.5 0.00059 1.3E-08 62.6 9.0 140 2-143 25-230 (246)
54 PF07678 A2M_comp: A-macroglob 97.4 0.00074 1.6E-08 61.9 8.6 102 33-134 4-125 (246)
55 COG1657 SqhC Squalene cyclase 97.1 0.00064 1.4E-08 68.1 4.8 119 26-145 352-482 (517)
56 COG1657 SqhC Squalene cyclase 96.3 0.011 2.4E-07 59.4 7.1 162 41-261 248-434 (517)
57 TIGR02474 pec_lyase pectate ly 91.0 0.69 1.5E-05 43.5 6.7 91 52-142 40-157 (290)
58 PF05817 Ribophorin_II: Oligos 90.8 2.3 5E-05 44.4 11.0 114 2-139 47-161 (636)
59 TIGR02474 pec_lyase pectate ly 86.7 3.9 8.5E-05 38.5 8.5 109 28-137 69-221 (290)
60 PF01122 Cobalamin_bind: Eukar 85.5 3.2 7E-05 39.7 7.4 102 28-142 164-278 (326)
61 KOG1366 Alpha-macroglobulin [P 75.8 8.4 0.00018 43.9 7.6 90 53-142 943-1044(1436)
62 KOG1366 Alpha-macroglobulin [P 69.0 13 0.00028 42.5 7.0 92 1-95 942-1045(1436)
63 PLN02592 ent-copalyl diphospha 55.5 22 0.00047 38.3 5.5 56 29-85 118-175 (800)
64 PLN02279 ent-kaur-16-ene synth 54.9 20 0.00044 38.5 5.2 56 29-85 76-135 (784)
65 PLN02592 ent-copalyl diphospha 53.9 35 0.00076 36.8 6.7 58 75-133 116-175 (800)
66 PF09492 Pec_lyase: Pectic aci 48.6 16 0.00035 34.4 2.9 43 102-144 37-84 (289)
67 PLN02279 ent-kaur-16-ene synth 48.3 32 0.00069 37.0 5.4 97 28-133 35-135 (784)
68 PF05817 Ribophorin_II: Oligos 39.0 4.9E+02 0.011 27.4 14.5 138 4-167 124-270 (636)
69 PF07470 Glyco_hydro_88: Glyco 32.2 2.8E+02 0.0061 26.1 8.8 65 76-140 217-294 (336)
70 PF01122 Cobalamin_bind: Eukar 32.1 89 0.0019 30.0 5.2 109 10-142 192-311 (326)
71 TIGR01577 oligosac_amyl oligos 30.8 6.3E+02 0.014 26.2 12.0 42 101-142 531-583 (616)
72 PF10022 DUF2264: Uncharacteri 26.9 6E+02 0.013 24.7 12.6 133 22-165 128-274 (361)
73 PF07944 DUF1680: Putative gly 25.2 2.4E+02 0.0051 28.7 7.2 96 43-138 50-167 (520)
74 PRK13621 psbV cytochrome c-550 22.3 1.8E+02 0.0038 25.3 4.8 54 74-143 107-163 (170)
75 TIGR03046 PS_II_psbV2 photosys 20.0 1.8E+02 0.004 24.8 4.4 54 74-143 96-152 (155)
No 1
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=2.3e-65 Score=495.94 Aligned_cols=307 Identities=69% Similarity=1.168 Sum_probs=256.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHH
Q 020982 1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVG 80 (319)
Q Consensus 1 ~~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~ 80 (319)
.+|++.||+||++|.+||+++.++.+||+++++||++||++||||+..+++|+|+|+||||++++.+|+..+.++.++++
T Consensus 118 ~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~ 197 (439)
T PLN02710 118 LPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVG 197 (439)
T ss_pred CccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHH
Confidence 47999999999999999987667889999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHH
Q 020982 81 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 160 (319)
Q Consensus 81 ~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~as 160 (319)
+||.+||++||||++.|+.|+|+++||||+++|.+||+.+.+|.+++++||++||..+|||+|||||.+|+|||||++|+
T Consensus 198 ~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~ 277 (439)
T PLN02710 198 DYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277 (439)
T ss_pred HHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCC---Cccc-----c--CCcccCCCCcccCcCCCccCCCCCCccccccCCccccccc---ccCCccc
Q 020982 161 FALLRRFHSIIGESP---TPVD-----Q--RGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH---REREPLF 227 (319)
Q Consensus 161 L~lL~~~~~~~~~~~---~~~~-----~--~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ 227 (319)
|+||++++.++.+.+ .+.+ . .|..... ++...... ...++-+.++.+.. .....++
T Consensus 278 L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 346 (439)
T PLN02710 278 FALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSS---------GKDDAGDT--DSADYSKVGFDFIKASNQQMGPLF 346 (439)
T ss_pred HHHHHHHhhcccccccccccccccccccccccccccc---------cccccccc--cccccccccccccccccccccccc
Confidence 999998865422111 0000 0 0111100 00000000 00001111112211 0223578
Q ss_pred CHHHHHHHHHhccCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHH
Q 020982 228 HSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLD 307 (319)
Q Consensus 228 ~~~~l~~~il~~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~ 307 (319)
|.++|++|||.|+|.+.|||+++|+|.||+|||||++++||++|+....+.+.+++.+.+++.+.|.+.++||+|||+.+
T Consensus 347 d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~~~~~~~~~~~~~~~~g~~~n~l~~~~p~~ni~~~ 426 (439)
T PLN02710 347 HSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSASKDEDSPPLPRHVLGPYSNLLEPIHPLYNVVLD 426 (439)
T ss_pred CHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhcccccCCCCCccccccCCCccccCCCCCccCCCHH
Confidence 99999999999999999999999999999999999999999999998877777777777889888999999999999999
Q ss_pred HHHHHHhhhcc
Q 020982 308 RYHEAHEFFSR 318 (319)
Q Consensus 308 ~~~~~~~~~~~ 318 (319)
++++|++||+.
T Consensus 427 ~~~~~~~~f~~ 437 (439)
T PLN02710 427 KYHEAIEFFSS 437 (439)
T ss_pred HHHHHHHHHhh
Confidence 99999999986
No 2
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-64 Score=463.77 Aligned_cols=272 Identities=58% Similarity=0.981 Sum_probs=254.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHH
Q 020982 1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVG 80 (319)
Q Consensus 1 ~~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~ 80 (319)
+|||+.||+||++|.++|.++.++.|||+++.+||.+++++||||+.+.+||.|+|.+|||+++..++|+..++..+.+.
T Consensus 146 l~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~ 225 (423)
T KOG0365|consen 146 LPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTL 225 (423)
T ss_pred chhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 68999999999999999998889999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC-CCccccCCCCCCCchhhhhHHHH
Q 020982 81 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGG 159 (319)
Q Consensus 81 ~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~-~dGGF~gr~~~~~D~~yt~~~~a 159 (319)
+||.+||+++||||+.|+.|+|++|||||+++|++|++.+.+|.+++.+|..+||- .+|||+||+||.+|+|||||+.|
T Consensus 226 ~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga 305 (423)
T KOG0365|consen 226 DWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGA 305 (423)
T ss_pred HHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhc
Q 020982 160 VFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLC 239 (319)
Q Consensus 160 sL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~ 239 (319)
+..||.+..... .| ++ ...++|.++|++|||.|
T Consensus 306 ~~~il~~~~~~~--------------------~~---------s~------------------~~~~F~~~~LqeYIL~C 338 (423)
T KOG0365|consen 306 SAPILQAFYSSA--------------------GH---------SL------------------EHLLFNKEALQEYILLC 338 (423)
T ss_pred hHHHHHHHhccc--------------------cc---------ch------------------hhhhcCHHHHHHHHHhh
Confidence 999998764211 11 00 12578999999999999
Q ss_pred cCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHHhhhccC
Q 020982 240 SQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS 319 (319)
Q Consensus 240 ~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~~~~~~~ 319 (319)
||.+.|||+++|+|++|.|||||+|++||+.++...-+.+++.+++-|+|.+.|.+.++||+|||+.+++.+|+.||.++
T Consensus 339 cQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y~~~~~d~~~~~~~ilg~~~n~L~p~~pvyni~~~~~~~a~~yF~s~ 418 (423)
T KOG0365|consen 339 CQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQHYSCAPSDSPHNPDRILGSSKNSLLPVHPVYNIPIDSVRKAIEYFLSN 418 (423)
T ss_pred ccCCCCCccCCCCCCcchhhhhhHhcchhHHhhhccCCCCCCCCCcccccCchhhcCccCccccCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999998877777888888999999999999999999999999999999864
No 3
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=4e-60 Score=459.39 Aligned_cols=249 Identities=16% Similarity=0.194 Sum_probs=224.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CCHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQN 78 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~~~~~~~ 78 (319)
++++.+||+|++|.+||.+ ++..+|+++++||++||+++|||++.+++++|+++||+|+.+|.+||. .+.+++++
T Consensus 70 ~r~~~~Yw~L~sL~lLg~~--l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~ 147 (439)
T PLN02710 70 NRPWLCYWILHSIALLGES--LDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREK 147 (439)
T ss_pred hhHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHH
Confidence 4689999999999999975 677889999999999999999999999999999999999999999995 34578999
Q ss_pred HHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHH
Q 020982 79 VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQG 158 (319)
Q Consensus 79 ~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~ 158 (319)
+++||.+||++||||+..+++|+|+++||||++++.+|+..+.++++++++||++||++||||+++|++|+|+|||||++
T Consensus 148 l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcav 227 (439)
T PLN02710 148 LYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGL 227 (439)
T ss_pred HHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHh
Q 020982 159 GVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLL 238 (319)
Q Consensus 159 asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~ 238 (319)
|+|+||+.+. .+|.+++.+|++.
T Consensus 228 AsL~LLg~l~---------------------------------------------------------~id~~~l~~WL~~ 250 (439)
T PLN02710 228 AAMILINEVD---------------------------------------------------------RLDLPSLINWVVF 250 (439)
T ss_pred HHHHHcCCcc---------------------------------------------------------ccCHHHHHHHHHH
Confidence 9999998642 3578899999875
Q ss_pred ccCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCC-----------------------------------------
Q 020982 239 CSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKD----------------------------------------- 277 (319)
Q Consensus 239 ~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~----------------------------------------- 277 (319)
||..+|||+|||||++|+|||||++++|+|+++..+++
T Consensus 251 -rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
T PLN02710 251 -RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSK 329 (439)
T ss_pred -hcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 68889999999999999999999999999998754331
Q ss_pred ----------------CCCCCCCcccc-----------CCCCCCCcccccccccCHHHHH
Q 020982 278 ----------------EDSSPLPRAVL-----------GPYSNVLEPVHPVFNIVLDRYH 310 (319)
Q Consensus 278 ----------------~~~~~~~~~i~-----------~~~~~~~~~~h~~~~i~~~~~~ 310 (319)
.++.+|++||+ |+|++.+|.+||+|+|+++++-
T Consensus 330 ~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~ 389 (439)
T PLN02710 330 VGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVA 389 (439)
T ss_pred cccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHH
Confidence 11224566763 7899999999999999999875
No 4
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-57 Score=414.93 Aligned_cols=239 Identities=39% Similarity=0.755 Sum_probs=225.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 81 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~ 81 (319)
+||++||+||++|.+++..+-++.++|+.+++||..+|+|||+|.....+|+|.|+.|+|+.++.+||..+.++.+..++
T Consensus 102 ~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vd 181 (342)
T COG5029 102 SHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVD 181 (342)
T ss_pred hhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 79999999999999998655577889999999999999999999998779999999999999999999999899999999
Q ss_pred HHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCccc-HHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHH
Q 020982 82 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD-LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 160 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d-~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~as 160 (319)
||++|||+|||||..|+.|+|+++||||+++|++|++.+.++ ++++++||.+||.+.|||+||+||.+|+||+||++++
T Consensus 182 yl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsS 261 (342)
T COG5029 182 YLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSS 261 (342)
T ss_pred HHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcch
Confidence 999999999999999999999999999999999999999888 6999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhcc
Q 020982 161 FALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCS 240 (319)
Q Consensus 161 L~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~ 240 (319)
|+||+.. ..+|.++|.+|||.|+
T Consensus 262 l~il~~~---------------------------------------------------------~~in~e~L~~yiL~c~ 284 (342)
T COG5029 262 LAILGKL---------------------------------------------------------DFINTEELTDYILDCQ 284 (342)
T ss_pred HHhcchh---------------------------------------------------------hhcCHHHHHHHHHhhc
Confidence 9999854 3579999999999998
Q ss_pred CCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHHhhhc
Q 020982 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFS 317 (319)
Q Consensus 241 Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~~~~~ 317 (319)
|...|||++||++.||+|||++++++||+++... +.++||.|+||..-.++++.||-
T Consensus 285 q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~--------------------l~~v~p~~clP~e~~~k~k~y~~ 341 (342)
T COG5029 285 QETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKY--------------------LNPVDPIYCLPQEVTNKFKKYFC 341 (342)
T ss_pred ccCCCCCCCCCcccchHHHHHHHHHHHHHhccCC--------------------CCCCCCcccCCHHHHHHHHHhhc
Confidence 8889999999999999999999999999998664 57789999999999999999985
No 5
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=4e-57 Score=427.40 Aligned_cols=245 Identities=20% Similarity=0.336 Sum_probs=223.0
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 020982 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY 82 (319)
Q Consensus 3 ~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~ 82 (319)
.++.+||++++|.+|+. ++.++++++++||++||+++|||++.++.++|+..||+|+.+|.+++..+.++++++++|
T Consensus 36 r~~~~y~~l~~L~lL~~---~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~ 112 (316)
T PLN03201 36 RMNGAYWGLTALDLLGK---LDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASY 112 (316)
T ss_pred hHHHHHHHHHHHHHhCC---CccccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 45679999999999996 456889999999999999999999998889999999999999999987777899999999
Q ss_pred HHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHH
Q 020982 83 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA 162 (319)
Q Consensus 83 i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~ 162 (319)
|.+||++||||++.+++|+|+++||||++++.+++..+.+|++++++||.+||++||||+++|++|+|++||||++|+|+
T Consensus 113 l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~ 192 (316)
T PLN03201 113 VAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALA 192 (316)
T ss_pred HHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHH
Confidence 99999999999999999999999999999999999887889999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCC
Q 020982 163 LLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD 242 (319)
Q Consensus 163 lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~ 242 (319)
+++.++ .+|.+.+++|++ +||.
T Consensus 193 llg~~~---------------------------------------------------------~~d~~~l~~wL~-~rQ~ 214 (316)
T PLN03201 193 ITGSLH---------------------------------------------------------HVDKDLLGWWLC-ERQV 214 (316)
T ss_pred HcCccc---------------------------------------------------------cCCHHHHHHHHH-HhCC
Confidence 998642 346788888866 5798
Q ss_pred CCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCcccc-----------CCCCCCCcccccccccCHHHHH
Q 020982 243 PRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVL-----------GPYSNVLEPVHPVFNIVLDRYH 310 (319)
Q Consensus 243 ~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~h~~~~i~~~~~~ 310 (319)
.+|||+|||||+||+|||||++++|++++...++|. +.+++||+ ++|++.+|++||+|+|+..++-
T Consensus 215 ~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~--~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~ 291 (316)
T PLN03201 215 KSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDK--DKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLL 291 (316)
T ss_pred CCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCH--HHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhc
Confidence 899999999999999999999999999999887774 56777753 6799999999999999888763
No 6
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.6e-56 Score=423.33 Aligned_cols=232 Identities=31% Similarity=0.600 Sum_probs=216.6
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 81 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~ 81 (319)
+|+..||+|+++|.+++. ++.+||+++++||.++|++||||...++++.|+++||||++++.+|+..+.++++++++
T Consensus 83 ~h~~~Ty~al~~L~ll~~---~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~ 159 (316)
T PLN03201 83 PHILYTLSAVQILALFDR---LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVD 159 (316)
T ss_pred ccHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 799999999999999964 56789999999999999999999998889999999999999999999877789999999
Q ss_pred HHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHH
Q 020982 82 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 161 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL 161 (319)
||.+||++||||+.+|+.|+|+++||||+++|.++|..+.+|.+++++||.+||+.+|||+|||+|++|+|||||++|+|
T Consensus 160 ~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L 239 (316)
T PLN03201 160 YIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSL 239 (316)
T ss_pred HHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccC
Q 020982 162 ALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 241 (319)
Q Consensus 162 ~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q 241 (319)
+||+.. .++|.+++++||++|+|
T Consensus 240 ~ll~~~---------------------------------------------------------~~~d~~~l~~~i~~~q~ 262 (316)
T PLN03201 240 IIIDRV---------------------------------------------------------HWIDKDKLAKFILDCQD 262 (316)
T ss_pred HHhccc---------------------------------------------------------cccCHHHHHHHHHHHcC
Confidence 999753 25789999999998755
Q ss_pred CCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHH
Q 020982 242 DPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAH 313 (319)
Q Consensus 242 ~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~ 313 (319)
...|||+++|+|.||+|||||++++|+++++. .+.++||.|+||...+++++
T Consensus 263 ~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~--------------------~l~~~~p~~~~~~~~~~~~~ 314 (316)
T PLN03201 263 DENGGISDRPDDAVDVFHTFFGVAGLSLLGYP--------------------GLKPIDPAYALPVDVVNRIG 314 (316)
T ss_pred CCCCCcCCCcCCCCChhHHHHHHHHHHhcCCC--------------------CCCCCCCcccCCHHHHHHhc
Confidence 56899999999999999999999999999753 27889999999999998765
No 7
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=4.3e-57 Score=424.41 Aligned_cols=248 Identities=21% Similarity=0.260 Sum_probs=222.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CCHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQN 78 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~~~~~~~ 78 (319)
++++++||++++|.+||.+ ++.++|+++++||++||+++|||++.+++++|+++||+|+.+|.+|+. .+.+++++
T Consensus 25 ~~~~~~y~~l~~l~lL~~~--~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~ 102 (299)
T cd02893 25 SRPWLLYWILHSLELLGEE--LDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREA 102 (299)
T ss_pred ccHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHH
Confidence 4789999999999999974 567789999999999999999999998889999999999999999996 35678999
Q ss_pred HHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHH
Q 020982 79 VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQG 158 (319)
Q Consensus 79 ~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~ 158 (319)
+++||.+||++||||+..|++|+|+++||||++++.+|+..+..+++++++||.+||++||||+++|++|+|+|||||++
T Consensus 103 ~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcav 182 (299)
T cd02893 103 LYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCAL 182 (299)
T ss_pred HHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999988788899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHh
Q 020982 159 GVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLL 238 (319)
Q Consensus 159 asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~ 238 (319)
++|++|+..+ .+|.+++.+||+.
T Consensus 183 asL~llg~~~---------------------------------------------------------~~d~~~l~~wl~~ 205 (299)
T cd02893 183 AALAILGKPD---------------------------------------------------------KLDLESLLRWLVA 205 (299)
T ss_pred HHHHHcCCcc---------------------------------------------------------ccCHHHHHHHHHh
Confidence 9999998642 3578999999886
Q ss_pred ccCCC-CCccCCCCCCCcchHHhHHHHHHHHhcCcCCCC-----------CCCCCCCCcccc-----------CCCCCCC
Q 020982 239 CSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK-----------DEDSSPLPRAVL-----------GPYSNVL 295 (319)
Q Consensus 239 ~~Q~~-~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~-----------~~~~~~~~~~i~-----------~~~~~~~ 295 (319)
+|.+ +|||+|||||+||+|||||++++|++++..... -.+.+.+++||+ |+|++.+
T Consensus 206 -~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~ 284 (299)
T cd02893 206 -RQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPR 284 (299)
T ss_pred -hcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCC
Confidence 5766 899999999999999999999999999875321 122345666653 5789999
Q ss_pred cccccccccCHHHH
Q 020982 296 EPVHPVFNIVLDRY 309 (319)
Q Consensus 296 ~~~h~~~~i~~~~~ 309 (319)
|++||+|+|+..++
T Consensus 285 D~yHT~~~l~~Lsl 298 (299)
T cd02893 285 DFYHTCYALSGLSI 298 (299)
T ss_pred CchhHHHHHHHHhc
Confidence 99999999998764
No 8
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-58 Score=408.55 Aligned_cols=270 Identities=20% Similarity=0.275 Sum_probs=243.8
Q ss_pred CCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCc
Q 020982 23 LPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAH 102 (319)
Q Consensus 23 ~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s~Q~~DGGF~~~pg~es~ 102 (319)
...+.+++|++||.+.-...-.|........+|...||.+.+|.+|+.....++++++.||++||+.+|||++.||..+|
T Consensus 15 ~~~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~h 94 (329)
T KOG0366|consen 15 PDELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPH 94 (329)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChH
Confidence 34567999999999976665678776666789999999999999999998889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCC
Q 020982 103 GGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRG 182 (319)
Q Consensus 103 ~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~ 182 (319)
+-+|.+|+++|++.++.+.+|+++.+.||...|++||.|.|..++|+|++++||++++|+||+++..++.++..+|+++|
T Consensus 95 ll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~C 174 (329)
T KOG0366|consen 95 LLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSC 174 (329)
T ss_pred HHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred ccc-----CCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCCCCCcch
Q 020982 183 AEC-----SIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDY 257 (319)
Q Consensus 183 ~~~-----~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp~k~~D~ 257 (319)
.|. -.||.|||+++-|||+..|. +. .....+|++.+. ||++.||.+.||.||||+|+||+
T Consensus 175 yN~DGGFG~~pGaESHagqifcCvgaLa--i~------------~~L~~vd~d~lg-wwlceRQ~~sGGLNGRpeKlpDV 239 (329)
T KOG0366|consen 175 YNFDGGFGCRPGAESHAGQIFCCVGALA--IT------------GKLHLVDRDLLG-WWLCERQLPSGGLNGRPEKLPDV 239 (329)
T ss_pred cccCCCcCCCCCcccccceehhhHHHHH--Hc------------cchhhcCHHHHH-HHHHhccCCCCCCCCCcccCcch
Confidence 996 39999999999999887652 11 223567887665 55888999999999999999999
Q ss_pred HHhHHHHHHHHhcCcCCCCCCCCCCCCccc-----------cCCCCCCCcccccccccCHHHH
Q 020982 258 YHTCYCLSGLSICQHSWLKDEDSSPLPRAV-----------LGPYSNVLEPVHPVFNIVLDRY 309 (319)
Q Consensus 258 ~~T~w~la~Lsll~~~~~~~~~~~~~~~~i-----------~~~~~~~~~~~h~~~~i~~~~~ 309 (319)
|||||++++|.|+++..|||. ..|++|| .|||++.+|++||+|+|++++.
T Consensus 240 CYSwWvlsSL~iigrl~wId~--ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSL 300 (329)
T KOG0366|consen 240 CYSWWVLSSLAIIGRLHWIDR--EKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSL 300 (329)
T ss_pred hhHHHHHhHHHHhhhhhhccH--HHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhh
Confidence 999999999999999999985 4677776 4789999999999999999875
No 9
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=3.6e-56 Score=419.48 Aligned_cols=251 Identities=18% Similarity=0.262 Sum_probs=223.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcC----CCCCCeeeccC----------CCCchhHHHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMK----DPSGAFRMHDA----------GEIDVRACYTAISVASI 67 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q----~~dGgF~~~~~----------~~~d~~~ty~al~~L~l 67 (319)
+|+++|||+|++|.+||.+...+.++|+++++||++|| +++|||++.++ +++|+++||+|+.+|.+
T Consensus 25 ~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~l 104 (307)
T cd02895 25 NRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLI 104 (307)
T ss_pred hhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHH
Confidence 68999999999999999863225788999999999999 99999998764 47999999999999999
Q ss_pred hcCC-CHHHHHHHHHHHHhccCCCCcccCCC---CCCCchhHHHHHHHHHHHhcCCC--cccHHHHHHHHHhcCCCCccc
Q 020982 68 LNIL-DDELLQNVGNYILSCQTYEGGIAGEP---GSEAHGGYTFCGLAAMILINEAD--RLDLDALIGWVVFRQGVEGGF 141 (319)
Q Consensus 68 Lg~~-~~~~~~~~~~~i~s~Q~~DGGF~~~p---g~es~~~~Ty~Al~~L~llg~~~--~~d~~~l~~~l~~~Q~~dGGF 141 (319)
|+.. ..++++++++||++||++||||++.+ ++|+|+++||||+++|.+|+..+ .+|++++++||.+||++||||
T Consensus 105 L~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF 184 (307)
T cd02895 105 LGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGF 184 (307)
T ss_pred hCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCc
Confidence 9863 34689999999999999999999997 89999999999999999999876 579999999999999999999
Q ss_pred cCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccc
Q 020982 142 QGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHR 221 (319)
Q Consensus 142 ~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
++.|++|+|++||||++++|++|+.+...
T Consensus 185 ~~~~~~Esh~g~Tyca~asL~lL~~~~~~--------------------------------------------------- 213 (307)
T cd02895 185 GQGPGLESHGGSTFCAIASLSLLGKLEEL--------------------------------------------------- 213 (307)
T ss_pred cCCCCCCccccHHHHHHHHHHHcCCcccc---------------------------------------------------
Confidence 99999999999999999999999875310
Q ss_pred cCCcccCHHHHHHHHHhccCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCcccc-----------CC
Q 020982 222 EREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVL-----------GP 290 (319)
Q Consensus 222 ~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~-----------~~ 290 (319)
...|.+++++|++. ||...|||+|||||+||+|||||++++|+|++...++|. +.+.+||+ ++
T Consensus 214 ---~~~~~~~l~~wL~~-rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~--~~l~~~l~~~q~~~~GGf~~~ 287 (307)
T cd02895 214 ---SEKFLERLKRWLVH-RQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDF--EKNRNYLLSTQQSLVGGFAKN 287 (307)
T ss_pred ---ccccHHHHHHHHHH-hcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCH--HHHHHHHHHHcCCCCCCcCCC
Confidence 13578899999885 688889999999999999999999999999998877764 46666653 57
Q ss_pred CCCCCcccccccccCHHHH
Q 020982 291 YSNVLEPVHPVFNIVLDRY 309 (319)
Q Consensus 291 ~~~~~~~~h~~~~i~~~~~ 309 (319)
|++.+|++||+|+|+..++
T Consensus 288 p~~~~D~~ht~~~la~Lsl 306 (307)
T cd02895 288 PDSHPDPLHSYLGLAALSL 306 (307)
T ss_pred CCCCCChhHHHHHHHHHHh
Confidence 9999999999999998764
No 10
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=9e-55 Score=409.99 Aligned_cols=210 Identities=36% Similarity=0.625 Sum_probs=196.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeecc---CCCCchhHHHHHHHHHHHhcCCC--HHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD---AGEIDVRACYTAISVASILNILD--DELL 76 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~---~~~~d~~~ty~al~~L~lLg~~~--~~~~ 76 (319)
+|++.||+|+++|.+||.+ .+.+||+++++||++||++||||+..+ ++|+|++.||||++++.+|+..+ .+++
T Consensus 90 ~~l~~ty~Al~~L~lL~~~--~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~ 167 (307)
T cd02895 90 GNLAMTYFALLSLLILGDD--LSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDK 167 (307)
T ss_pred ccHHHHHHHHHHHHHhCCc--hhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccH
Confidence 7999999999999999975 456899999999999999999999876 78999999999999999999776 5789
Q ss_pred HHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCC---cccHHHHHHHHHhcCCCCccccCCCCCCCchhh
Q 020982 77 QNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD---RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCY 153 (319)
Q Consensus 77 ~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~---~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~y 153 (319)
+++++||.+||++||||+..|+.|+|+++||||+++|.+|+..+ .+|.+++++||++||+.+|||+|||+|++|+||
T Consensus 168 ~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cy 247 (307)
T cd02895 168 EKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCY 247 (307)
T ss_pred HHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccch
Confidence 99999999999999999999999999999999999999999875 689999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHH
Q 020982 154 SFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQ 233 (319)
Q Consensus 154 t~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 233 (319)
|||++|+|+||+.. .++|.++++
T Consensus 248 sfw~~a~L~iL~~~---------------------------------------------------------~~id~~~l~ 270 (307)
T cd02895 248 SFWVGASLKLLDAF---------------------------------------------------------QLIDFEKNR 270 (307)
T ss_pred hhHHHHHHHHcCcc---------------------------------------------------------cccCHHHHH
Confidence 99999999999753 257899999
Q ss_pred HHHHhccCCCCCccCCCCCCCcchHHhHHHHHHHHhc
Q 020982 234 RYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC 270 (319)
Q Consensus 234 ~~il~~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll 270 (319)
+||+.|+|..+|||++||+|.||+|||||++++|+|+
T Consensus 271 ~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 271 NYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred HHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 9999876677999999999999999999999999985
No 11
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=5e-54 Score=401.80 Aligned_cols=245 Identities=21% Similarity=0.354 Sum_probs=221.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcC-CCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHH--HHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMK-DPSGAFRMHDAGEIDVRACYTAISVASILNILDDEL--LQN 78 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q-~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~--~~~ 78 (319)
++++.|||++++|.+||.. +.++|+++++||++|| +++|||+..++.++|++.||+|+.+|.+++....++ +++
T Consensus 28 ~r~~~~y~~l~~l~lL~~~---~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~ 104 (287)
T cd02894 28 LRMSGIYWGLTALDLLGQL---ERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEK 104 (287)
T ss_pred hHHHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHH
Confidence 4688999999999999964 4678999999999999 679999998888899999999999999997655566 899
Q ss_pred HHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHH
Q 020982 79 VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQG 158 (319)
Q Consensus 79 ~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~ 158 (319)
+++||.+||++||||++.|++|+|+++||||+++|.+++..+.+|++++++||.+||++||||++++++++|++||||++
T Consensus 105 ~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cav 184 (287)
T cd02894 105 IAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCV 184 (287)
T ss_pred HHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHh
Q 020982 159 GVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLL 238 (319)
Q Consensus 159 asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~ 238 (319)
++|++|+.++ .++.+++++||+.
T Consensus 185 asL~llg~~~---------------------------------------------------------~~~~~~~~~~L~~ 207 (287)
T cd02894 185 GALAILGSLD---------------------------------------------------------LIDRDRLGWWLCE 207 (287)
T ss_pred HHHHHcCccc---------------------------------------------------------ccCHHHHHHHHHH
Confidence 9999998642 2467899999875
Q ss_pred ccCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCcccc-----------CCCCCCCcccccccccCHH
Q 020982 239 CSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVL-----------GPYSNVLEPVHPVFNIVLD 307 (319)
Q Consensus 239 ~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~h~~~~i~~~ 307 (319)
+|..+|||+|||+|+||+|||||++++|++++...++| .+.+.+|++ ++|++.+|++||+|+|...
T Consensus 208 -~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~--~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~L 284 (287)
T cd02894 208 -RQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWIN--KNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGL 284 (287)
T ss_pred -hCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccC--HHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHH
Confidence 68889999999999999999999999999999887766 356666653 4688999999999999887
Q ss_pred HH
Q 020982 308 RY 309 (319)
Q Consensus 308 ~~ 309 (319)
++
T Consensus 285 sl 286 (287)
T cd02894 285 SL 286 (287)
T ss_pred Hh
Confidence 64
No 12
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-53 Score=379.20 Aligned_cols=232 Identities=31% Similarity=0.608 Sum_probs=219.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 81 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~ 81 (319)
||+..|..||+.|.+... ++.+||+++..||..+|+|||+|.+...||.|.|++|||+++|.+||..+.+++++.++
T Consensus 93 ~hll~TlsAvQiL~~yds---i~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd 169 (329)
T KOG0366|consen 93 PHLLYTLSAVQILALYDS---INVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVD 169 (329)
T ss_pred hHHHHHHHHHHHHHHHcc---cccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHH
Confidence 799999999999999875 66889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHH
Q 020982 82 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 161 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL 161 (319)
|+.+|.|.|||||..||.|||++..||++++|+++|+++.+|.+.+.+||..||.+.||.+|||+|.+|+||+||++++|
T Consensus 170 ~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL 249 (329)
T KOG0366|consen 170 FVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSL 249 (329)
T ss_pred HHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccC
Q 020982 162 ALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 241 (319)
Q Consensus 162 ~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q 241 (319)
.|+++++ .+|+++|++||+.|+.
T Consensus 250 ~iigrl~---------------------------------------------------------wId~ekL~~FIl~cQd 272 (329)
T KOG0366|consen 250 AIIGRLH---------------------------------------------------------WIDREKLTKFILACQD 272 (329)
T ss_pred HHhhhhh---------------------------------------------------------hccHHHHHHHHHhcCC
Confidence 9999874 3688999999998744
Q ss_pred CCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHH
Q 020982 242 DPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAH 313 (319)
Q Consensus 242 ~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~ 313 (319)
.+.|||++||+..+|++||++++|+||+++..+ +.+++|.|++|..-+++++
T Consensus 273 ~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~--------------------l~~idP~fcmp~~v~~r~~ 324 (329)
T KOG0366|consen 273 EETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPG--------------------LKPIDPIFCMPKEVLQRIK 324 (329)
T ss_pred CCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCC--------------------ceecCCcccCcHHHHhhhc
Confidence 478999999999999999999999999999775 6778999999999888875
No 13
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-53 Score=382.67 Aligned_cols=235 Identities=33% Similarity=0.626 Sum_probs=215.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeec-cCCCCchhHHHHHHHHHHHhcCCCHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH-DAGEIDVRACYTAISVASILNILDDELLQNVG 80 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~-~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~ 80 (319)
||++.||.++..|.+||++ ++++||+.+.+++..||++||+|... .++++|||++|||++|++||+.+..+|.++++
T Consensus 103 ~~lA~Ty~sl~~L~~lGdd--LsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~ 180 (347)
T KOG0367|consen 103 PHLAMTYTSLACLVILGDD--LSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLI 180 (347)
T ss_pred hhHHHHHHHHHHHHHHcch--HhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHH
Confidence 8999999999999999987 88999999999999999999999874 46789999999999999999988888999999
Q ss_pred HHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCC--C----cccHHHHHHHHHhcCCCCccccCCCCCCCchhhh
Q 020982 81 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA--D----RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYS 154 (319)
Q Consensus 81 ~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~--~----~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt 154 (319)
.||++||++||||+..|++|+|+++||||+++|+++|+. + ..+++++++|+.+||..+|||+||+||++|+||+
T Consensus 181 ~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYa 260 (347)
T KOG0367|consen 181 GYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYA 260 (347)
T ss_pred HHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHH
Confidence 999999999999999999999999999999999999987 3 2358999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHH
Q 020982 155 FWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQR 234 (319)
Q Consensus 155 ~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 234 (319)
||++|+|+||+.. +++|.+++..
T Consensus 261 FWigasLklL~~~---------------------------------------------------------~~~d~~~lr~ 283 (347)
T KOG0367|consen 261 FWIGASLKLLDAD---------------------------------------------------------WLIDKQVLRK 283 (347)
T ss_pred HHHHHHHHHccch---------------------------------------------------------HhhhHHHHHH
Confidence 9999999999864 4668889999
Q ss_pred HHHhccCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHHh
Q 020982 235 YLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHE 314 (319)
Q Consensus 235 ~il~~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~~ 314 (319)
||++++|.--|||++.|+..||++|||+++++|++++... +.++||-.|++-..+++.+.
T Consensus 284 fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~~--------------------~~~v~p~l~~s~~~~~r~~~ 343 (347)
T KOG0367|consen 284 FLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEKG--------------------LSPVCPSLNMSMRASERCCD 343 (347)
T ss_pred HHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCCC--------------------CCCCCccccccHHHHHHHHH
Confidence 9998744446999999999999999999999999998664 56789999999998888765
Q ss_pred h
Q 020982 315 F 315 (319)
Q Consensus 315 ~ 315 (319)
.
T Consensus 344 l 344 (347)
T KOG0367|consen 344 L 344 (347)
T ss_pred H
Confidence 4
No 14
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=9.6e-53 Score=394.96 Aligned_cols=226 Identities=60% Similarity=1.056 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHH
Q 020982 1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVG 80 (319)
Q Consensus 1 ~~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~ 80 (319)
.+|+.+||+|+.+|.+|+.++.++.+||+++++||+++|++||||+..+++|+|+|+||||++++.+|+..++++.++++
T Consensus 73 ~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~ 152 (299)
T cd02893 73 LPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVA 152 (299)
T ss_pred CccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHH
Confidence 37999999999999999986556789999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC-CccccCCCCCCCchhhhhHHHH
Q 020982 81 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGG 159 (319)
Q Consensus 81 ~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~-dGGF~gr~~~~~D~~yt~~~~a 159 (319)
+||.+||++||||+++|+.|+|+++||||+++|.+||..+.+|++++++||++||++ +|||+|||+|++|+|||||+++
T Consensus 153 ~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a 232 (299)
T cd02893 153 EYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGG 232 (299)
T ss_pred HHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHH
Confidence 999999999999999999999999999999999999998889999999999999997 9999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhc
Q 020982 160 VFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLC 239 (319)
Q Consensus 160 sL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~ 239 (319)
+|++|+.......+. .+ -...+++|.+++++||+.|
T Consensus 233 ~l~ll~~~~~~~~~~---------------------------~~-----------------~~~~~~~~~~~l~~~il~~ 268 (299)
T cd02893 233 SLPILEAILNAEKKF---------------------------DD-----------------SAEGTLFDQEALQEYILLC 268 (299)
T ss_pred HHHHHHHHhcccccc---------------------------cc-----------------cccccccCHHHHHHHHHHh
Confidence 999998764321110 00 0012578999999999987
Q ss_pred cCCCCCccCCCCCCCcchHHhHHHHHHHHhc
Q 020982 240 SQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC 270 (319)
Q Consensus 240 ~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll 270 (319)
+|..+|||+++|++.||+|||++++++|++.
T Consensus 269 ~q~~~GGf~~~p~~~~D~yHT~~~l~~Lsl~ 299 (299)
T cd02893 269 CQSEEGGLRDKPGKPRDFYHTCYALSGLSIA 299 (299)
T ss_pred cCCCCCCcCCCCCCCCCchhHHHHHHHHhcC
Confidence 7888999999999999999999999999973
No 15
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=2.5e-51 Score=383.62 Aligned_cols=209 Identities=32% Similarity=0.627 Sum_probs=195.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCccc--HHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNV 79 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~d--r~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~ 79 (319)
||+..||+|+.+|.+++. ++.++ ++++++||+++|++||||+..+++++|+++||||++++.+|+..+.++++++
T Consensus 77 ~~~~~t~~a~~~L~ll~~---~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~ 153 (287)
T cd02894 77 PHILSTLSAIQILALYDL---LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKA 153 (287)
T ss_pred chHHHHHHHHHHHHHhhh---hhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHH
Confidence 689999999999999974 34566 9999999999999999999988899999999999999999998778899999
Q ss_pred HHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHH
Q 020982 80 GNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGG 159 (319)
Q Consensus 80 ~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~a 159 (319)
++||.+||++||||+++|+.|+|+++||||+++|.++|..+.+|.+++++||.+||+++|||++||+|++|+|||||+++
T Consensus 154 ~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a 233 (287)
T cd02894 154 VDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLS 233 (287)
T ss_pred HHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhc
Q 020982 160 VFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLC 239 (319)
Q Consensus 160 sL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~ 239 (319)
+|++|+.. .++|.+++.+||+++
T Consensus 234 ~l~~l~~~---------------------------------------------------------~~~~~~~l~~~l~~~ 256 (287)
T cd02894 234 SLKIIGRL---------------------------------------------------------HWINKNKLKNFILAC 256 (287)
T ss_pred HHHHhccc---------------------------------------------------------cccCHHHHHHHHHHh
Confidence 99999753 235789999999976
Q ss_pred cCCCCCccCCCCCCCcchHHhHHHHHHHHhc
Q 020982 240 SQDPRGGLRDKLRKPRDYYHTCYCLSGLSIC 270 (319)
Q Consensus 240 ~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll 270 (319)
+|.+.|||+++|+|.||+|||||++++|+|+
T Consensus 257 q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 257 QDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred cCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 4467899999999999999999999999986
No 16
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=9e-51 Score=379.13 Aligned_cols=246 Identities=23% Similarity=0.348 Sum_probs=221.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcC-CCCCCeeeccCCCCchhHHHHHHHHHHHhcC--CCHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMK-DPSGAFRMHDAGEIDVRACYTAISVASILNI--LDDELLQN 78 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q-~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~--~~~~~~~~ 78 (319)
++++.|||+|++|.+||.+ ++..+++++++||+++| ++||||+..+++++|++.||+|+.+|.++|. .+..++++
T Consensus 25 ~~~~~~y~~l~~l~ll~~~--~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~ 102 (286)
T cd02890 25 SRLWLLYWILSSLDLLGED--LDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREK 102 (286)
T ss_pred hHHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHH
Confidence 5789999999999999974 66788999999999999 9999999988889999999999999999997 46788999
Q ss_pred HHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHH
Q 020982 79 VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQG 158 (319)
Q Consensus 79 ~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~ 158 (319)
+++||.+||++||||+..|++|+|+++||||+++|.++|....++++++++||.+||++||||+++|++++|++||||++
T Consensus 103 ~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av 182 (286)
T cd02890 103 IYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAV 182 (286)
T ss_pred HHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHH
Confidence 99999999999999999999999999999999999999987778899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHh
Q 020982 159 GVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLL 238 (319)
Q Consensus 159 asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~ 238 (319)
++|++|+.+. ..+.+++.+||+.
T Consensus 183 ~sL~~l~~~~---------------------------------------------------------~~~~~~~~~~L~~ 205 (286)
T cd02890 183 ASLALLGRLD---------------------------------------------------------LIDKERLLRWLVE 205 (286)
T ss_pred HHHHHcCCCc---------------------------------------------------------ccCHHHHHHHHHH
Confidence 9999998642 2467899999886
Q ss_pred ccCCCCC-ccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCcccc-----------CCCCCCCcccccccccCH
Q 020982 239 CSQDPRG-GLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVL-----------GPYSNVLEPVHPVFNIVL 306 (319)
Q Consensus 239 ~~Q~~~G-Gf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~h~~~~i~~ 306 (319)
+|...| ||+|||+|.||+|||||++++|++++...+++. +.+.+|++ ++|++.+|++||+|+|..
T Consensus 206 -~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~--~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~ 282 (286)
T cd02890 206 -RQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQ--EKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSG 282 (286)
T ss_pred -hCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCH--HHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHH
Confidence 577665 999999999999999999999999998855443 34555543 468899999999999988
Q ss_pred HHH
Q 020982 307 DRY 309 (319)
Q Consensus 307 ~~~ 309 (319)
.++
T Consensus 283 lsl 285 (286)
T cd02890 283 LSL 285 (286)
T ss_pred HHc
Confidence 764
No 17
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-50 Score=367.66 Aligned_cols=251 Identities=20% Similarity=0.254 Sum_probs=227.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhc---CCCHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN---ILDDELLQN 78 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg---~~~~~~~~~ 78 (319)
.++.+.||...++.++++.+ ..+++|+.+.+++.|+.++|+|+..+++++|+..||+|+.+|.+++ ..+.++++.
T Consensus 53 ~~~~~iyw~~~sl~~l~~~~--~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~ 130 (342)
T COG5029 53 SRLNTIYWGDNSLWMLKRYD--KTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDS 130 (342)
T ss_pred cchhhhhhccchHHHhcCcc--hhhhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHH
Confidence 47889999999999999862 3577999999999999999999999999999999999999999996 345678889
Q ss_pred HHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHH
Q 020982 79 VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQG 158 (319)
Q Consensus 79 ~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~ 158 (319)
+.+||..||+|||+|...-.+|+|.+..|+|+++|+++|..+..+.+..++||++||++||||+.-|+.|+|..||||++
T Consensus 131 l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcal 210 (342)
T COG5029 131 LASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCAL 210 (342)
T ss_pred HHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHH
Confidence 99999999999999999988999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccC-HHHHHHHHH
Q 020982 159 GVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFH-SIALQRYLL 237 (319)
Q Consensus 159 asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~~il 237 (319)
|+|++|+.++ .+| .+++.+|+.
T Consensus 211 aalalL~~Ld---------------------------------------------------------~ls~~E~l~~Wl~ 233 (342)
T COG5029 211 AALALLGKLD---------------------------------------------------------KLSDVEKLIRWLA 233 (342)
T ss_pred HHHHHHhccc---------------------------------------------------------ccchHHHHHHHHH
Confidence 9999999874 234 478888855
Q ss_pred hccCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCcccc-----------CCCCCCCcccccccccCH
Q 020982 238 LCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVL-----------GPYSNVLEPVHPVFNIVL 306 (319)
Q Consensus 238 ~~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~h~~~~i~~ 306 (319)
.||.+.|||+|||||.+|+||+||++++|+|++...++|. ..|++||+ |+|++.+|.+||+|++.+
T Consensus 234 -~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~--e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lag 310 (342)
T COG5029 234 -ERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINT--EELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAG 310 (342)
T ss_pred -HcccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCH--HHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHH
Confidence 6899999999999999999999999999999998888874 46777764 679999999999999999
Q ss_pred HHHHHHHh
Q 020982 307 DRYHEAHE 314 (319)
Q Consensus 307 ~~~~~~~~ 314 (319)
.+...-++
T Consensus 311 Lsl~~~k~ 318 (342)
T COG5029 311 LSLIEYKY 318 (342)
T ss_pred HHHhccCC
Confidence 98765443
No 18
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-50 Score=366.05 Aligned_cols=250 Identities=18% Similarity=0.222 Sum_probs=224.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCC---CHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL---DDELLQN 78 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~---~~~~~~~ 78 (319)
+.-++.||.+++|++|+.. ++..-.+++++||..||.|.|||++.|++-+|+..||.||.+|.++|.. +.++|++
T Consensus 98 SR~Wm~YWil~sl~lL~~~--~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~ 175 (423)
T KOG0365|consen 98 SRPWMCYWILNSLALLDEW--LDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREK 175 (423)
T ss_pred CcchhHHHHHHHHHHhcCc--CCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 3458899999999999974 6666689999999999999999999999999999999999999999864 4689999
Q ss_pred HHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHH
Q 020982 79 VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQG 158 (319)
Q Consensus 79 ~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~ 158 (319)
+.+|+.+++++||||....++|.|++..|||+++..++|...+.-.+.+.+||.+||+++|||+|.|+.|+|++||||++
T Consensus 176 l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCal 255 (423)
T KOG0365|consen 176 LYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCAL 255 (423)
T ss_pred HHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHH
Confidence 99999999999999999999999999999999999999987765678999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHh
Q 020982 159 GVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLL 238 (319)
Q Consensus 159 asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~ 238 (319)
|+|.||+... .+|.++|.+|..
T Consensus 256 AalalLn~~d---------------------------------------------------------~ln~~~Ll~W~~- 277 (423)
T KOG0365|consen 256 AALALLNEMD---------------------------------------------------------QLNLEKLLEWAV- 277 (423)
T ss_pred HHHHHHhhhh---------------------------------------------------------hhCHHHHHHHHH-
Confidence 9999999763 358899999966
Q ss_pred ccCCC-CCccCCCCCCCcchHHhHHHHHHHHhcCcCCCC-C-------CCCCCCCcccc-----------CCCCCCCccc
Q 020982 239 CSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK-D-------EDSSPLPRAVL-----------GPYSNVLEPV 298 (319)
Q Consensus 239 ~~Q~~-~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~-~-------~~~~~~~~~i~-----------~~~~~~~~~~ 298 (319)
.||.+ +|||+||.||++|.|||||+++...|+++.... + .++.+|++||+ |+|++.+|.+
T Consensus 278 ~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfY 357 (423)
T KOG0365|consen 278 RRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFY 357 (423)
T ss_pred HhhhhhhccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchh
Confidence 58985 899999999999999999999999999875431 1 24456788874 7899999999
Q ss_pred ccccccCHHHHHH
Q 020982 299 HPVFNIVLDRYHE 311 (319)
Q Consensus 299 h~~~~i~~~~~~~ 311 (319)
||+|+|.+.++..
T Consensus 358 HTCYcLsGLSiAq 370 (423)
T KOG0365|consen 358 HTCYCLSGLSIAQ 370 (423)
T ss_pred hhhhHhcchhHHh
Confidence 9999999999543
No 19
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=2.2e-48 Score=363.05 Aligned_cols=211 Identities=50% Similarity=0.922 Sum_probs=197.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 81 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~ 81 (319)
+|+..||+|+.+|.++|.+ .++.++++++++||.++|++||||+..+++++|++.||||+++|.++|....++++++++
T Consensus 75 ~~~~~T~~al~~l~llg~~-~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~ 153 (286)
T cd02890 75 PHLASTYAAVLSLAILGDD-ALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLID 153 (286)
T ss_pred ccHHHHHHHHHHHHHcCcc-ccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence 7899999999999999973 234678999999999999999999998888999999999999999999877788999999
Q ss_pred HHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCc-cccCCCCCCCchhhhhHHHHH
Q 020982 82 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEG-GFQGRTNKLVDGCYSFWQGGV 160 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dG-GF~gr~~~~~D~~yt~~~~as 160 (319)
||.+||++||||+..|+.|+|+++||||+++|.++|..+.+|++++++||.+||+.+| ||+||++|++|+|||||++++
T Consensus 154 ~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~ 233 (286)
T cd02890 154 YILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGAS 233 (286)
T ss_pred HHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHH
Confidence 9999999999999999999999999999999999999888999999999999999988 999999999999999999999
Q ss_pred HHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhcc
Q 020982 161 FALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCS 240 (319)
Q Consensus 161 L~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~ 240 (319)
|.+|+.+. .+|.+++.+||+.++
T Consensus 234 l~~l~~~~---------------------------------------------------------~~~~~~l~~~l~~~~ 256 (286)
T cd02890 234 LKILGRLH---------------------------------------------------------LIDQEKLREYILSCQ 256 (286)
T ss_pred HHHccccc---------------------------------------------------------ccCHHHHHHHHHhhc
Confidence 99998641 357899999998677
Q ss_pred CCCCCccCCCCCCCcchHHhHHHHHHHHhc
Q 020982 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSIC 270 (319)
Q Consensus 241 Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll 270 (319)
|.++|||+++|+|+||+|||||++++|+++
T Consensus 257 q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl~ 286 (286)
T cd02890 257 QSEVGGFSDKPGKPPDLYHTYYGLSGLSLL 286 (286)
T ss_pred CCCCCCcCCCCCCCCCchhHHHHHHHHHcC
Confidence 889999999999999999999999999974
No 20
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-47 Score=344.53 Aligned_cols=252 Identities=20% Similarity=0.314 Sum_probs=216.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCC--------CCeeecc----------CCCCchhHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPS--------GAFRMHD----------AGEIDVRACYTAIS 63 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~d--------GgF~~~~----------~~~~d~~~ty~al~ 63 (319)
+.+++.+|||++|++|+. ++.++|+.+++||.+.|-.. .||.++. ..++++.+||++++
T Consensus 37 ~R~tiafFaisGLd~L~~---ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~ 113 (347)
T KOG0367|consen 37 NRLTIAFFAISGLDLLDA---LDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSLA 113 (347)
T ss_pred chHHHHHHHHcchhhhhh---hhccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHHH
Confidence 357899999999999996 56788999999999987421 2566531 24689999999999
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHhccCCCCcccCCC-CCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccc
Q 020982 64 VASILNI-LDDELLQNVGNYILSCQTYEGGIAGEP-GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGF 141 (319)
Q Consensus 64 ~L~lLg~-~~~~~~~~~~~~i~s~Q~~DGGF~~~p-g~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF 141 (319)
+|..||. ++.+|++.+.++|..||++||.|...+ |.|+|+++.|||++++.+|+....+|.++++.||.++|++||||
T Consensus 114 ~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGf 193 (347)
T KOG0367|consen 114 CLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGF 193 (347)
T ss_pred HHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhcccccc
Confidence 9999996 467899999999999999999998765 78999999999999999999888999999999999999999999
Q ss_pred cCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccc
Q 020982 142 QGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHR 221 (319)
Q Consensus 142 ~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
+..|++|+|+++||||+|+|+|++++-+....
T Consensus 194 g~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~------------------------------------------------ 225 (347)
T KOG0367|consen 194 GQHPGGESHGGATFCALASLALMGKLIPEELS------------------------------------------------ 225 (347)
T ss_pred ccCCCCCCCcchhHHHHHHHHHHhhhhhhhhc------------------------------------------------
Confidence 99999999999999999999999987321000
Q ss_pred cCCcccCHHHHHHHHHhccCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCcccc-------C----C
Q 020982 222 EREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVL-------G----P 290 (319)
Q Consensus 222 ~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~-------~----~ 290 (319)
.-.+.+++++|++. ||...|||+|||||++|+||+||++++|.|++..+++|. ..+++|++ | -
T Consensus 226 ---~~~~~erlirWli~-RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~--~~lr~fll~~Q~~~iGGFsK~ 299 (347)
T KOG0367|consen 226 ---NTSKVERLIRWLIQ-RQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDK--QVLRKFLLSTQDKLIGGFSKW 299 (347)
T ss_pred ---cccCHHHHHHHHHH-HhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhH--HHHHHHHHHhhhhhcCcccCC
Confidence 11346889999874 799999999999999999999999999999999999884 35666653 2 3
Q ss_pred CCCCCcccccccccCHHHHH
Q 020982 291 YSNVLEPVHPVFNIVLDRYH 310 (319)
Q Consensus 291 ~~~~~~~~h~~~~i~~~~~~ 310 (319)
|+..||.+|++|+|...+..
T Consensus 300 P~~~pD~~HsylG~~alal~ 319 (347)
T KOG0367|consen 300 PEEDPDLLHSYLGLAALALL 319 (347)
T ss_pred CccCchHHHHHHHHHHHHHh
Confidence 88899999999999988764
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.92 E-value=7.9e-24 Score=193.70 Aligned_cols=209 Identities=34% Similarity=0.574 Sum_probs=178.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCC-------CCchhHHHHHHHHHHHhcCCC-H
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-------EIDVRACYTAISVASILNILD-D 73 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~-------~~d~~~ty~al~~L~lLg~~~-~ 73 (319)
+++..|++++.+|..++..........++.++||.++|++||+|...... .+++..|++++.+|..++... .
T Consensus 80 ~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~ 159 (300)
T cd00688 80 PSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPD 159 (300)
T ss_pred cchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCc
Confidence 57899999999999998642234456889999999999999999875432 689999999999999998653 4
Q ss_pred HHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCC---CCCCc
Q 020982 74 ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT---NKLVD 150 (319)
Q Consensus 74 ~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~---~~~~D 150 (319)
...+++++||.++|++|||| .++.++|...|+|++.+|..++.......+++++||.++|..+|||.... .+..|
T Consensus 160 ~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~ 237 (300)
T cd00688 160 PLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD 237 (300)
T ss_pred HHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCc
Confidence 67899999999999999999 77889999999999999999997544568999999999999999998765 78899
Q ss_pred hhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHH
Q 020982 151 GCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSI 230 (319)
Q Consensus 151 ~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
.++++|++.+|..++... .....+
T Consensus 238 ~~~~~~~~~aL~~~~~~~--------------------------------------------------------~~~~~~ 261 (300)
T cd00688 238 SCYTEWAAYALLALGKLG--------------------------------------------------------DLEDAE 261 (300)
T ss_pred hHHHHHHHHHHHHHhhhc--------------------------------------------------------CcccHH
Confidence 999999999998876530 012346
Q ss_pred HHHHHHHhccCCCCCccCCCCCCCcchHHhHHHHHHHHh
Q 020982 231 ALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSI 269 (319)
Q Consensus 231 ~l~~~il~~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsl 269 (319)
++.+||+. +|.++|||..+|.+.+|++||+|++.+|+.
T Consensus 262 ~~~~~L~~-~q~~~G~w~~~~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 262 KLVKWLLS-QQNEDGGFSSKPGKSYDTQHTVFALLALSL 299 (300)
T ss_pred HHHHHHHh-ccCCCCCcCcCCCCCCcchhhHHHHHHHhc
Confidence 78899775 688899999999999999999999999975
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.91 E-value=1.7e-23 Score=191.56 Aligned_cols=246 Identities=20% Similarity=0.183 Sum_probs=195.8
Q ss_pred CcHHHHHHHHHHHHHhCCC---CCCCcccHHHHHHHHHhcCCCCCCeeeccCC-CCchhHHHHHHHHHHHhcC---CCHH
Q 020982 2 PHLATTYAAVNALISLGGE---KSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYTAISVASILNI---LDDE 74 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~---~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~-~~d~~~ty~al~~L~lLg~---~~~~ 74 (319)
..+++|++++.++..++.. +......+++.++||.++|++||+|+...+. .++++.|++++.+|..++. ....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~ 104 (300)
T cd00688 25 EQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRI 104 (300)
T ss_pred CcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHH
Confidence 3578899999999988752 1123456899999999999999999987655 7899999999999999986 3556
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCC-------CCchhHHHHHHHHHHHhcCCC-cccHHHHHHHHHhcCCCCccccCCCC
Q 020982 75 LLQNVGNYILSCQTYEGGIAGEPGS-------EAHGGYTFCGLAAMILINEAD-RLDLDALIGWVVFRQGVEGGFQGRTN 146 (319)
Q Consensus 75 ~~~~~~~~i~s~Q~~DGGF~~~pg~-------es~~~~Ty~Al~~L~llg~~~-~~d~~~l~~~l~~~Q~~dGGF~gr~~ 146 (319)
..+++++||.++|++||||...+.. +++...|++|+.+|.+++... ..+++++++||.++|++|||| .++
T Consensus 105 ~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~ 182 (300)
T cd00688 105 DLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPG 182 (300)
T ss_pred HHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCC
Confidence 7899999999999999999876543 789999999999999999754 456899999999999999999 678
Q ss_pred CCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcc
Q 020982 147 KLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPL 226 (319)
Q Consensus 147 ~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (319)
.+.|...++|++.+|.+++... .
T Consensus 183 ~~~~~~~t~~~~~aL~~~~~~~---------------------------------------------------------~ 205 (300)
T cd00688 183 GESHGYGTACAAAALALLGDLD---------------------------------------------------------S 205 (300)
T ss_pred ccccHHHHHHHHHHHHHcCCcc---------------------------------------------------------h
Confidence 8899999999999999876420 0
Q ss_pred cCHHHHHHHHHhccCCCCCccCCCC---CCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCcccc----------CCCCC
Q 020982 227 FHSIALQRYLLLCSQDPRGGLRDKL---RKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVL----------GPYSN 293 (319)
Q Consensus 227 ~~~~~l~~~il~~~Q~~~GGf~~rp---~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~----------~~~~~ 293 (319)
...+++.+||+. +|..+|||...+ .+.+|+++|+|++.+|..++... .......+.+|+. ..|.+
T Consensus 206 ~~~~~~~~~L~~-~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~-~~~~~~~~~~~L~~~q~~~G~w~~~~~~ 283 (300)
T cd00688 206 PDAKKALRWLLS-RQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLG-DLEDAEKLVKWLLSQQNEDGGFSSKPGK 283 (300)
T ss_pred HHHHHHHHHHHH-hcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhc-CcccHHHHHHHHHhccCCCCCcCcCCCC
Confidence 134678899775 698899999875 89999999999999999987641 0000111222222 34667
Q ss_pred CCcccccccccCHHH
Q 020982 294 VLEPVHPVFNIVLDR 308 (319)
Q Consensus 294 ~~~~~h~~~~i~~~~ 308 (319)
..+++|++++|....
T Consensus 284 ~~~~~~t~~al~aL~ 298 (300)
T cd00688 284 SYDTQHTVFALLALS 298 (300)
T ss_pred CCcchhhHHHHHHHh
Confidence 788999999887654
No 23
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.80 E-value=1.3e-19 Score=145.37 Aligned_cols=108 Identities=23% Similarity=0.354 Sum_probs=91.8
Q ss_pred HHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHH--HHHHHhccCCCCcccCCC-CCCCchhHHHH
Q 020982 32 YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNV--GNYILSCQTYEGGIAGEP-GSEAHGGYTFC 108 (319)
Q Consensus 32 ~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~--~~~i~s~Q~~DGGF~~~p-g~es~~~~Ty~ 108 (319)
++||+++|++||||... +.++++..|++|+.+|..++... +++++ ++||.++|++||||+..| +.++|+..|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999987 67899999999999999998643 47888 999999999999999999 56789999999
Q ss_pred HHHHHHHhcCCCc-ccHHHHHHHHHhcCCCCcccc
Q 020982 109 GLAAMILINEADR-LDLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 109 Al~~L~llg~~~~-~d~~~l~~~l~~~Q~~dGGF~ 142 (319)
++.+|.+++..+. ..++++++||+++|++||||+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999997653 568999999999999999996
No 24
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.69 E-value=8.2e-17 Score=129.06 Aligned_cols=85 Identities=25% Similarity=0.346 Sum_probs=73.4
Q ss_pred HHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHH--HHHHHhcCCCCccccCCCC-CCCchhhhhH
Q 020982 80 GNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDAL--IGWVVFRQGVEGGFQGRTN-KLVDGCYSFW 156 (319)
Q Consensus 80 ~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l--~~~l~~~Q~~dGGF~gr~~-~~~D~~yt~~ 156 (319)
|+||+++|++||||+.. +.++++..|++|+.+|..++... +++++ ++||.++|++||||...+. ..+|+.+|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999988 88999999999999999999764 58888 9999999999999999884 5789999999
Q ss_pred HHHHHHHHhhh
Q 020982 157 QGGVFALLRRF 167 (319)
Q Consensus 157 ~~asL~lL~~~ 167 (319)
+++++.+++..
T Consensus 78 ~l~~l~~~~~~ 88 (113)
T PF13249_consen 78 ALAALELLGRP 88 (113)
T ss_dssp HHHHHHHHT-G
T ss_pred HHHHHHHcCCC
Confidence 99999998764
No 25
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.64 E-value=1.7e-14 Score=137.70 Aligned_cols=213 Identities=19% Similarity=0.145 Sum_probs=149.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcC--------------CCCCCeeeccC--CCCchhHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMK--------------DPSGAFRMHDA--GEIDVRACYTAISVA 65 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q--------------~~dGgF~~~~~--~~~d~~~ty~al~~L 65 (319)
+++..|.+++.+|...|..... ....++.++||.+.| .++|||..... +.+++..|-.++.+|
T Consensus 23 ~~~~~Ta~~~~al~~~g~~~~~-~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al 101 (348)
T cd02889 23 SQVWDTALALQALLEAGLAPEF-DPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 101 (348)
T ss_pred CchHHHHHHHHHHHHcCCCCcc-CHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHH
Confidence 5678899999999998862112 334789999999999 68898886432 234555666777777
Q ss_pred HHhcCC-------CHHHHHHHHHHHHhccCCCCcccCC-C------------------CCCCchhHHHHHHHHHHHhcCC
Q 020982 66 SILNIL-------DDELLQNVGNYILSCQTYEGGIAGE-P------------------GSEAHGGYTFCGLAAMILINEA 119 (319)
Q Consensus 66 ~lLg~~-------~~~~~~~~~~~i~s~Q~~DGGF~~~-p------------------g~es~~~~Ty~Al~~L~llg~~ 119 (319)
..++.. .....++.++||.++|++||||... + ..++++..|..++.+|..++..
T Consensus 102 ~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~ 181 (348)
T cd02889 102 LRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKL 181 (348)
T ss_pred HHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhc
Confidence 666643 2356788999999999999999743 2 1246778899999999998864
Q ss_pred Cc-------ccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCccc
Q 020982 120 DR-------LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQT 192 (319)
Q Consensus 120 ~~-------~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s 192 (319)
.. .-++++++||.+.|.+||||.++.. ..+...+.+++-+|...+...
T Consensus 182 ~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~------------------------ 236 (348)
T cd02889 182 YPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDE------------------------ 236 (348)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCc------------------------
Confidence 32 1357899999999999999975432 222323344444444433210
Q ss_pred CcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCC----------CCCCcchHHhHH
Q 020982 193 TTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDK----------LRKPRDYYHTCY 262 (319)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~r----------p~k~~D~~~T~w 262 (319)
..-..++..+|+++ +|.++|||... +...+|+..|.|
T Consensus 237 --------------------------------~~~~~~~~~~~L~~-~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~ 283 (348)
T cd02889 237 --------------------------------NSPYVRKACDWLLS-KQNPDGGWGESYESYEDPSYAGGGRSTVVQTAW 283 (348)
T ss_pred --------------------------------CcHHHHHHHHHHHH-ccCCCCCcCCcccccccccccCCCCCcHHHHHH
Confidence 01134667889775 59999999763 345789999999
Q ss_pred HHHHHHhcCcC
Q 020982 263 CLSGLSICQHS 273 (319)
Q Consensus 263 ~la~Lsll~~~ 273 (319)
++-+|...+..
T Consensus 284 al~aL~~~g~~ 294 (348)
T cd02889 284 ALLALMAAGEP 294 (348)
T ss_pred HHHHHHhcCCC
Confidence 99999887654
No 26
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.59 E-value=6.9e-14 Score=144.21 Aligned_cols=214 Identities=19% Similarity=0.164 Sum_probs=148.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCC--------------CCCCeeec--cCCCCchhHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD--------------PSGAFRMH--DAGEIDVRACYTAISVA 65 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~--------------~dGgF~~~--~~~~~d~~~ty~al~~L 65 (319)
+.++-|-+++.+|.-.|..+.. ....++.++||.+.|. +.|||+.. ..+.+++..|-.++.+|
T Consensus 306 s~~wDTala~~AL~~ag~~~~~-~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL 384 (634)
T cd02892 306 SQVWDTALAVQALLEAGLAPEF-DPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 384 (634)
T ss_pred CchHHHHHHHHHHHHcCCCccc-hHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHH
Confidence 3577888999999777743112 1235789999999985 35677654 23446777888888888
Q ss_pred HHhcCCC-------HHHHHHHHHHHHhccCCCCcccCC-CC--------------------CCCchhHHHHHHHHHHHhc
Q 020982 66 SILNILD-------DELLQNVGNYILSCQTYEGGIAGE-PG--------------------SEAHGGYTFCGLAAMILIN 117 (319)
Q Consensus 66 ~lLg~~~-------~~~~~~~~~~i~s~Q~~DGGF~~~-pg--------------------~es~~~~Ty~Al~~L~llg 117 (319)
..++... ....++.++||.++|++||||+.. +. ..+++..|..++.+|..++
T Consensus 385 ~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~ 464 (634)
T cd02892 385 LRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFG 464 (634)
T ss_pred HHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhc
Confidence 7776432 245678999999999999999842 11 1456778999999999998
Q ss_pred CCCcc-------cHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCc
Q 020982 118 EADRL-------DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT 190 (319)
Q Consensus 118 ~~~~~-------d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~ 190 (319)
..... -++++++||.+.|++||||.++- +...+..|++++.+|...+....
T Consensus 465 ~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~~G~~~~--------------------- 522 (634)
T cd02892 465 KLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAAAGEDYE--------------------- 522 (634)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHHhCCccc---------------------
Confidence 65332 36899999999999999997643 33333345555555555432100
Q ss_pred ccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCC----------CCCcchHHh
Q 020982 191 QTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL----------RKPRDYYHT 260 (319)
Q Consensus 191 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp----------~k~~D~~~T 260 (319)
.--..++..+|+++ +|.++|||...+ ...+++..|
T Consensus 523 ----------------------------------~~~~i~~a~~~L~s-~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~T 567 (634)
T cd02892 523 ----------------------------------NSPYIRKACDFLLS-KQNPDGGWGESYLSYEDKSYAGGGRSTVVQT 567 (634)
T ss_pred ----------------------------------CcHHHHHHHHHHHh-cCCCCCCCCCccccccCcccCCCCCCcHHHH
Confidence 00134667899886 599999997532 245779999
Q ss_pred HHHHHHHHhcCcC
Q 020982 261 CYCLSGLSICQHS 273 (319)
Q Consensus 261 ~w~la~Lsll~~~ 273 (319)
-|++.+|...+..
T Consensus 568 A~AllaLl~~g~~ 580 (634)
T cd02892 568 AWALLALMAAGEP 580 (634)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999877653
No 27
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.59 E-value=6.8e-14 Score=143.77 Aligned_cols=210 Identities=18% Similarity=0.119 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhCCCC-CCCcccHHHHHHHHHhcCC--------------CCCCeeecc--CCCCchhHHHHHHHHHHH
Q 020982 5 ATTYAAVNALISLGGEK-SLPSINRSKVYTFLKCMKD--------------PSGAFRMHD--AGEIDVRACYTAISVASI 67 (319)
Q Consensus 5 ~~ty~al~~L~lLg~~~-~~~~~dr~~~~~~i~~~q~--------------~dGgF~~~~--~~~~d~~~ty~al~~L~l 67 (319)
+-|-+++.+|.--|..+ .. ...-++..+||.+.|. ++|||.... .+-++.-.|=-++.+|..
T Consensus 307 WDTala~~AL~e~g~~~~~~-~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~ 385 (634)
T TIGR03463 307 WDTAFAVQALAATPETAGRH-RRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLV 385 (634)
T ss_pred hhHHHHHHHHHHcCCCchhh-hHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHH
Confidence 67888888887655311 11 1124689999999984 468887653 334566666666666555
Q ss_pred hc---CC-----CHHHHHHHHHHHHhccCCCCcccCCC---------------------CCCCchhHHHHHHHHHHHhcC
Q 020982 68 LN---IL-----DDELLQNVGNYILSCQTYEGGIAGEP---------------------GSEAHGGYTFCGLAAMILINE 118 (319)
Q Consensus 68 Lg---~~-----~~~~~~~~~~~i~s~Q~~DGGF~~~p---------------------g~es~~~~Ty~Al~~L~llg~ 118 (319)
+. .. .....++.++||+++|+.||||+... ...+++.-|..+|.+|..+++
T Consensus 386 ~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~ 465 (634)
T TIGR03463 386 LEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRK 465 (634)
T ss_pred HhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhh
Confidence 32 21 12456789999999999999999321 134677788999999988875
Q ss_pred CCc------c--cHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCc
Q 020982 119 ADR------L--DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT 190 (319)
Q Consensus 119 ~~~------~--d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~ 190 (319)
... + -++++++||.+.|++||||.++ ++...+.-|++++.+|...+...
T Consensus 466 ~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~-Wg~~~~Y~T~~al~aL~~~G~~~---------------------- 522 (634)
T TIGR03463 466 HHPHVPDGRITRAISRGVRFLRSRQREDGSFPGS-WGVCFTYGTFHGVMGLRAAGASP---------------------- 522 (634)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHhcCCCCCcccc-CCCCCcHHHHHHHHHHHHcCCCc----------------------
Confidence 432 1 2678999999999999999875 33445556677777776654210
Q ss_pred ccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCC----------CCCCcchHHh
Q 020982 191 QTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDK----------LRKPRDYYHT 260 (319)
Q Consensus 191 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~r----------p~k~~D~~~T 260 (319)
+--..++..+||++ +|+++||+.++ ++..+.++.|
T Consensus 523 ----------------------------------~~~~i~rA~~~Ll~-~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~T 567 (634)
T TIGR03463 523 ----------------------------------DDMALQRAAAWLRS-YQRADGGWGEVYESCLQARYVEGKQSQAVMT 567 (634)
T ss_pred ----------------------------------CcHHHHHHHHHHHH-ccCCCCCccCccCccccccccCCCCCcHHHH
Confidence 00124667899886 59999999764 3446889999
Q ss_pred HHHHHHHHhcCcC
Q 020982 261 CYCLSGLSICQHS 273 (319)
Q Consensus 261 ~w~la~Lsll~~~ 273 (319)
.|++.+|...+..
T Consensus 568 A~Al~aL~~~g~~ 580 (634)
T TIGR03463 568 SWALLALAEAGEG 580 (634)
T ss_pred HHHHHHHHHcCCc
Confidence 9999999988643
No 28
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.57 E-value=7.5e-14 Score=133.25 Aligned_cols=160 Identities=15% Similarity=0.173 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhCCCC----CCCcccHHHHHHHHHhcCCCCCCeeeccC-------------------CCCchhHHHHH
Q 020982 5 ATTYAAVNALISLGGEK----SLPSINRSKVYTFLKCMKDPSGAFRMHDA-------------------GEIDVRACYTA 61 (319)
Q Consensus 5 ~~ty~al~~L~lLg~~~----~~~~~dr~~~~~~i~~~q~~dGgF~~~~~-------------------~~~d~~~ty~a 61 (319)
..|-.++.+|..++... ....-..++.++||.++|++||+|..... ..+++..|-.+
T Consensus 92 ~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~ 171 (348)
T cd02889 92 DDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSV 171 (348)
T ss_pred CChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHH
Confidence 36677788887776531 11222367889999999999999984321 13567789999
Q ss_pred HHHHHHhcCCCH-------HHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCC-CcccHHHHHHHHHh
Q 020982 62 ISVASILNILDD-------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA-DRLDLDALIGWVVF 133 (319)
Q Consensus 62 l~~L~lLg~~~~-------~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~-~~~d~~~l~~~l~~ 133 (319)
+.+|..++...+ ...++.++||.++|++||||.+.. ...+...|++++.+|..+|.. ....++++++||.+
T Consensus 172 l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~-~~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~ 250 (348)
T cd02889 172 LEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRW-GVCFIYGTWFALEALAAAGEDENSPYVRKACDWLLS 250 (348)
T ss_pred HHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccC-CCcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHH
Confidence 999988885422 346789999999999999996432 345677788899999988864 23457899999999
Q ss_pred cCCCCccccCCC----------CCCCchhhhhHHHHHHHHHh
Q 020982 134 RQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLR 165 (319)
Q Consensus 134 ~Q~~dGGF~gr~----------~~~~D~~yt~~~~asL~lL~ 165 (319)
+|++||||.... ...+++..|.+++-+|...+
T Consensus 251 ~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g 292 (348)
T cd02889 251 KQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAG 292 (348)
T ss_pred ccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcC
Confidence 999999997532 33567788888877775543
No 29
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.56 E-value=7.2e-14 Score=144.05 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=119.2
Q ss_pred CcHHHHHHHHHHHHHhCCCC----CCCcccHHHHHHHHHhcCCCCCCeeeccC---------------------CCCchh
Q 020982 2 PHLATTYAAVNALISLGGEK----SLPSINRSKVYTFLKCMKDPSGAFRMHDA---------------------GEIDVR 56 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~----~~~~~dr~~~~~~i~~~q~~dGgF~~~~~---------------------~~~d~~ 56 (319)
|.+-.|-.++.+|..++... ....-..++.++||.++|++||||..... +.+.+.
T Consensus 372 pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~ 451 (634)
T cd02892 372 PDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVE 451 (634)
T ss_pred CCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcc
Confidence 34557888999998887531 11222356789999999999999984211 134567
Q ss_pred HHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCC--CcccHHHH
Q 020982 57 ACYTAISVASILNILDD-------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA--DRLDLDAL 127 (319)
Q Consensus 57 ~ty~al~~L~lLg~~~~-------~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~--~~~d~~~l 127 (319)
.|..++.+|..++...+ ...+++++||.++|++||||.+. .+..+...|+.|+.+|..+|.. ....++++
T Consensus 452 ~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~-wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a 530 (634)
T cd02892 452 CTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGR-WGVCYIYGTWFALEALAAAGEDYENSPYIRKA 530 (634)
T ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCcccc-CCCccHHHHHHHHHHHHHhCCcccCcHHHHHH
Confidence 79999999999875432 35788999999999999999653 3346677889999999999864 23467899
Q ss_pred HHHHHhcCCCCccccCCC----------CCCCchhhhhHHHHHHHHH
Q 020982 128 IGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALL 164 (319)
Q Consensus 128 ~~~l~~~Q~~dGGF~gr~----------~~~~D~~yt~~~~asL~lL 164 (319)
++||+++|++||||.... ...+++..|.|++-+|...
T Consensus 531 ~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~ 577 (634)
T cd02892 531 CDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAA 577 (634)
T ss_pred HHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHc
Confidence 999999999999997432 2346667777776666443
No 30
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.53 E-value=8.1e-13 Score=135.84 Aligned_cols=212 Identities=18% Similarity=0.145 Sum_probs=151.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCC-------------CCCCeeec--cCCCCchhHHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD-------------PSGAFRMH--DAGEIDVRACYTAISVAS 66 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~-------------~dGgF~~~--~~~~~d~~~ty~al~~L~ 66 (319)
+.++-|-+++.+|...|..+ +.....+..+||++.|. +.|||++. ..+-+|+..|-.++.+|.
T Consensus 314 s~vWDTa~ai~AL~~ag~~~--~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~ 391 (635)
T TIGR01507 314 SPVWDTALAVLALREAGLPA--DHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALN 391 (635)
T ss_pred CcHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHH
Confidence 46778999999998888532 22346899999999873 25777765 334589999999999988
Q ss_pred HhcCCC----HHHHHHHHHHHHhccCCCCcccCCC------------C-------CCCchhHHHHHHHHHHHhcCCC-cc
Q 020982 67 ILNILD----DELLQNVGNYILSCQTYEGGIAGEP------------G-------SEAHGGYTFCGLAAMILINEAD-RL 122 (319)
Q Consensus 67 lLg~~~----~~~~~~~~~~i~s~Q~~DGGF~~~p------------g-------~es~~~~Ty~Al~~L~llg~~~-~~ 122 (319)
.++... ....++.++||.++|++||||+... . ..+++.-|-.++.+|...+... ..
T Consensus 392 ~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~ 471 (635)
T TIGR01507 392 GLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWP 471 (635)
T ss_pred HcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhH
Confidence 875322 2467889999999999999997521 1 1355666888888888776432 22
Q ss_pred cHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCC
Q 020982 123 DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGD 202 (319)
Q Consensus 123 d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~ 202 (319)
-++++++||.+.|++||||-|+ ++ .+|+|....++..|..... +..
T Consensus 472 ~i~rav~~L~~~Q~~dG~W~g~-wg---~~~~Y~T~~al~aL~~~g~-~~~----------------------------- 517 (635)
T TIGR01507 472 VIERAVEYLKREQEPDGSWFGR-WG---VNYLYGTGAVLSALKAVGI-DTR----------------------------- 517 (635)
T ss_pred HHHHHHHHHHHccCCCCCCccC-CC---CccccHHHHHHHHHHHcCC-Ccc-----------------------------
Confidence 3689999999999999998665 22 4777776666666653210 000
Q ss_pred CCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCC----------CCCcchHHhHHHHHHHHhcCc
Q 020982 203 GSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL----------RKPRDYYHTCYCLSGLSICQH 272 (319)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp----------~k~~D~~~T~w~la~Lsll~~ 272 (319)
.+ ..++..+|+++ +|+++|||.... ...+|+..|.|++.+|...+.
T Consensus 518 ---------------------~~--~i~rAv~wL~~-~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~ 573 (635)
T TIGR01507 518 ---------------------EP--YIQKALAWLES-HQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGR 573 (635)
T ss_pred ---------------------cH--HHHHHHHHHHH-hcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCC
Confidence 00 23567889886 599999997431 235789999999999998875
Q ss_pred C
Q 020982 273 S 273 (319)
Q Consensus 273 ~ 273 (319)
.
T Consensus 574 ~ 574 (635)
T TIGR01507 574 A 574 (635)
T ss_pred C
Confidence 4
No 31
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.52 E-value=1.4e-13 Score=120.68 Aligned_cols=148 Identities=18% Similarity=0.142 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 020982 4 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI 83 (319)
Q Consensus 4 l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i 83 (319)
|..|||...+|.+.+.+ -.+++..||.+.|+++|.+...-...++.++||.|+-+|..++. .+++.+|=
T Consensus 123 Le~ty~~~~~l~~~n~~------~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~-----~~~v~~Fe 191 (274)
T COG1689 123 LEATYWMMSALNMVNYE------YLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP-----KEEVRHFE 191 (274)
T ss_pred HHHHHHHHHHHHHhCcC------chHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccc-----hHHHHhHH
Confidence 78999999999999965 14777888888888887776654446899999999887766653 45666676
Q ss_pred HhccCCCCcccCCCCC-CCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCC-CCCCchhhhhHHHHHH
Q 020982 84 LSCQTYEGGIAGEPGS-EAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT-NKLVDGCYSFWQGGVF 161 (319)
Q Consensus 84 ~s~Q~~DGGF~~~pg~-es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~-~~~~D~~yt~~~~asL 161 (319)
.+|- .+|||...|++ ++-+-.||+|+.+|.+|+... -+.+.++||.+.||.||||+... .+.+-..+||.|+++|
T Consensus 192 ~~c~-~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~--~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L 268 (274)
T COG1689 192 LCCG-DWGGFTEVPNSYPPYIEPTFYALRGLELLGGKY--CISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASL 268 (274)
T ss_pred hccc-cCCCcccCCCCCCCccchHHHHHhHHHHHccCc--CchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHH
Confidence 6665 47999999986 789999999999999999763 35788999999999999998654 6889999999999999
Q ss_pred HHHh
Q 020982 162 ALLR 165 (319)
Q Consensus 162 ~lL~ 165 (319)
..|.
T Consensus 269 ~~l~ 272 (274)
T COG1689 269 ASLH 272 (274)
T ss_pred HHHh
Confidence 8774
No 32
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.52 E-value=1.1e-13 Score=142.18 Aligned_cols=143 Identities=19% Similarity=0.216 Sum_probs=116.1
Q ss_pred CcHHHHHHHHHHHHHhCCCCCC---Ccc--cHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCC-CHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSL---PSI--NRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDEL 75 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~---~~~--dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~-~~~~ 75 (319)
|++..|-.+|.+|..++..... .++ -.++.++||++.|++||+|.+.. +......|++++.+|..+|.. ....
T Consensus 448 ~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~W-g~~~~Y~T~~al~aL~~~G~~~~~~~ 526 (634)
T TIGR03463 448 SYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSW-GVCFTYGTFHGVMGLRAAGASPDDMA 526 (634)
T ss_pred CcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccC-CCCCcHHHHHHHHHHHHcCCCcCcHH
Confidence 5677889999999988753210 111 25678999999999999997643 345677899999999998863 4467
Q ss_pred HHHHHHHHHhccCCCCcccCC----------CCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCC
Q 020982 76 LQNVGNYILSCQTYEGGIAGE----------PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT 145 (319)
Q Consensus 76 ~~~~~~~i~s~Q~~DGGF~~~----------pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~ 145 (319)
.++.++||+++|++||||+.. ++.+|++..|.|||.+|...|..+...+++.++||+++|.+||||...+
T Consensus 527 i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 527 LQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred HHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 889999999999999999863 4557999999999999999987655568999999999999999998644
No 33
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.51 E-value=2.4e-13 Score=119.24 Aligned_cols=184 Identities=16% Similarity=0.142 Sum_probs=142.7
Q ss_pred cccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-ccCCCCcccCC-------
Q 020982 25 SINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILS-CQTYEGGIAGE------- 96 (319)
Q Consensus 25 ~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s-~Q~~DGGF~~~------- 96 (319)
.++.+++++||.++|++||||....+-...+..||+|+.++.+||... ..++|+++|+.+ .|+.-+||...
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~ev-Pr~EktiefL~d~~qt~~~~~a~~~~~l~~l 83 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEV-PRKEKTIEFLYDQMQTAGVGVAMAIEFLRIL 83 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcC-chHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 468999999999999999999987654445799999999999999754 367899999998 45555666420
Q ss_pred ---------------------------------CCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccC
Q 020982 97 ---------------------------------PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 143 (319)
Q Consensus 97 ---------------------------------pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~g 143 (319)
-+.......|||+..+|.+.+... .+.+..||.+-|+.+|++.+
T Consensus 84 g~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~~---~eE~k~~v~~~~re~~~g~~ 160 (274)
T COG1689 84 GAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYEY---LEEMKEKVIEFVREFGIGDA 160 (274)
T ss_pred cccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcCc---hHHHHHHHHHHhhhhccccc
Confidence 122334778999999999999642 56778899998998888887
Q ss_pred CCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccC
Q 020982 144 RTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHRER 223 (319)
Q Consensus 144 r~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (319)
---+.+.+..||.|+-.|..+..
T Consensus 161 YGv~~pnt~~t~~aly~l~~k~~--------------------------------------------------------- 183 (274)
T COG1689 161 YGVTHPNTTMTYQALYTLGSKGP--------------------------------------------------------- 183 (274)
T ss_pred cccCCcchHHHHHHHHhhccccc---------------------------------------------------------
Confidence 77777888888888766655432
Q ss_pred CcccCHHHHHHHHHhccCCCCCccCCCCCCCcc-hHHhHHHHHHHHhcCcCCCC
Q 020982 224 EPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRD-YYHTCYCLSGLSICQHSWLK 276 (319)
Q Consensus 224 ~~l~~~~~l~~~il~~~Q~~~GGf~~rp~k~~D-~~~T~w~la~Lsll~~~~~~ 276 (319)
.+....|-++| ..+|||+..|+..|. ..-|||++.+|.||+....+
T Consensus 184 -----~~~v~~Fe~~c--~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~~i 230 (274)
T COG1689 184 -----KEEVRHFELCC--GDWGGFTEVPNSYPPYIEPTFYALRGLELLGGKYCI 230 (274)
T ss_pred -----hHHHHhHHhcc--ccCCCcccCCCCCCCccchHHHHHhHHHHHccCcCc
Confidence 13455675543 356999999999766 88999999999999887443
No 34
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.45 E-value=2.3e-12 Score=132.28 Aligned_cols=163 Identities=16% Similarity=0.138 Sum_probs=113.8
Q ss_pred CcHHHHHHHHHHHHHhCCC-CCCCcccHHHHHHHHHhcCCCCCCeeeccC---------------------CCCchhHHH
Q 020982 2 PHLATTYAAVNALISLGGE-KSLPSINRSKVYTFLKCMKDPSGAFRMHDA---------------------GEIDVRACY 59 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~-~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~---------------------~~~d~~~ty 59 (319)
|.+.-|-.++.++.++..+ +.......++.++||.++|++||||..... ..+.+..|-
T Consensus 363 PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~ 442 (621)
T TIGR01787 363 PDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTA 442 (621)
T ss_pred CCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHH
Confidence 3444555666565555432 122333356799999999999999984321 112334688
Q ss_pred HHHHHHHHhcCCC---HHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCc--ccHHHHHHHHHhc
Q 020982 60 TAISVASILNILD---DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFR 134 (319)
Q Consensus 60 ~al~~L~lLg~~~---~~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~--~d~~~l~~~l~~~ 134 (319)
.++.+|...+... ....++.++||.++|++||+|.+.-+ ......|..++.+|..+|.... ..++++++||+++
T Consensus 443 ~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~ 521 (621)
T TIGR01787 443 RVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSR 521 (621)
T ss_pred HHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhh
Confidence 8888887776321 24578999999999999999865433 3345568888999998886522 3478999999999
Q ss_pred CCCCccccCCC----------CCCCchhhhhHHHHHHHHHh
Q 020982 135 QGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLR 165 (319)
Q Consensus 135 Q~~dGGF~gr~----------~~~~D~~yt~~~~asL~lL~ 165 (319)
|++||||+... .+.+|+..|.|++.+|...+
T Consensus 522 Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag 562 (621)
T TIGR01787 522 QMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAG 562 (621)
T ss_pred cCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999997542 13578888999998886544
No 35
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.45 E-value=5e-12 Score=129.88 Aligned_cols=211 Identities=20% Similarity=0.188 Sum_probs=140.1
Q ss_pred CcHHHHHHHHHHHHHhCC--CCCCCcccHHHHHHHHHhcCCCC---------------CCeeec--cCCCCchhHHHHHH
Q 020982 2 PHLATTYAAVNALISLGG--EKSLPSINRSKVYTFLKCMKDPS---------------GAFRMH--DAGEIDVRACYTAI 62 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~--~~~~~~~dr~~~~~~i~~~q~~d---------------GgF~~~--~~~~~d~~~ty~al 62 (319)
++++-|-+++.+|.--|. .+.. .....+..+||.+.|..+ |||.+. ..+-+|+..|=.++
T Consensus 294 s~vWDTalai~AL~~ag~~~~~~~-~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~ 372 (621)
T TIGR01787 294 SQVWDTAFAIQALRESGDHRLPEF-HPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVA 372 (621)
T ss_pred CcHHHHHHHHHHHHHcCCCCcccc-CHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHH
Confidence 467888999999976663 1111 224689999999998755 666543 23345777666665
Q ss_pred HHHHHhcC----CCHHHHHHHHHHHHhccCCCCcccCC-------------C--------CCCCchhHHHHHHHHHHHhc
Q 020982 63 SVASILNI----LDDELLQNVGNYILSCQTYEGGIAGE-------------P--------GSEAHGGYTFCGLAAMILIN 117 (319)
Q Consensus 63 ~~L~lLg~----~~~~~~~~~~~~i~s~Q~~DGGF~~~-------------p--------g~es~~~~Ty~Al~~L~llg 117 (319)
..+.++.. ......++.++||.++|++||||+.. | -..+...-|..+|.+|...+
T Consensus 373 la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~ 452 (621)
T TIGR01787 373 LKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG 452 (621)
T ss_pred HHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc
Confidence 55544432 12345678999999999999999842 2 01233457889999998886
Q ss_pred CCC---cccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhH---HHHHHHHHhhhhhccCCCCCccccCCcccCCCCcc
Q 020982 118 EAD---RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFW---QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQ 191 (319)
Q Consensus 118 ~~~---~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~---~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~ 191 (319)
... ...++++++||.+.|.+||+|.++-+ .+|+|. ++.+|..++....
T Consensus 453 ~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg----~~y~YgT~~al~aL~~~G~~~~---------------------- 506 (621)
T TIGR01787 453 HRADEIRNVLERALEYLRREQRADGSWFGRWG----VNYTYGTGFVLSALAAAGRTYR---------------------- 506 (621)
T ss_pred CccHhHHHHHHHHHHHHHHhcCCCCCCcccCC----CCCchhHHHHHHHHHHhCCccc----------------------
Confidence 421 12468999999999999999976532 345444 4444444332100
Q ss_pred cCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCC----------CCCcchHHhH
Q 020982 192 TTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL----------RKPRDYYHTC 261 (319)
Q Consensus 192 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp----------~k~~D~~~T~ 261 (319)
.--..++..+|+++ .|+++||+...+ ...+|+..|.
T Consensus 507 ---------------------------------~~~~i~rA~~~L~~-~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta 552 (621)
T TIGR01787 507 ---------------------------------NCPEVQKACDWLLS-RQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTG 552 (621)
T ss_pred ---------------------------------CCHHHHHHHHHHHh-hcCCCCCCCcCCccccccccCCCCCCCHHHHH
Confidence 00023567899886 599999997543 2358999999
Q ss_pred HHHHHHHhcCcC
Q 020982 262 YCLSGLSICQHS 273 (319)
Q Consensus 262 w~la~Lsll~~~ 273 (319)
|++.+|...+..
T Consensus 553 ~AL~AL~~ag~~ 564 (621)
T TIGR01787 553 WALMALIAAGEA 564 (621)
T ss_pred HHHHHHHHcCcc
Confidence 999999877643
No 36
>PLN02993 lupeol synthase
Probab=99.42 E-value=9.7e-12 Score=128.82 Aligned_cols=214 Identities=17% Similarity=0.198 Sum_probs=143.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCC---------------CCCeeec--cCCCCchhHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDP---------------SGAFRMH--DAGEIDVRACYTAISV 64 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~---------------dGgF~~~--~~~~~d~~~ty~al~~ 64 (319)
+.++-|-+++++|.--|-.+.. ..--++..+||++.|.. .|||.++ ..+-++.--|--++.+
T Consensus 416 SqvWDTa~a~qAl~~agl~~~~-~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka 494 (763)
T PLN02993 416 SQLWDTGFAIQALLASDLSDET-DDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC 494 (763)
T ss_pred CchHHHHHHHHHHHHcCCCccc-CHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence 5788999999999877742212 22367889999998752 2776654 3445666666666654
Q ss_pred HHHhcCC---------CHHHHHHHHHHHHhccCCCCcccCCC------------------C---CCCchhHHHHHHHHHH
Q 020982 65 ASILNIL---------DDELLQNVGNYILSCQTYEGGIAGEP------------------G---SEAHGGYTFCGLAAMI 114 (319)
Q Consensus 65 L~lLg~~---------~~~~~~~~~~~i~s~Q~~DGGF~~~p------------------g---~es~~~~Ty~Al~~L~ 114 (319)
+.+|... ......+.++||+++||.||||+... + ..+.+--|-.+|.+|.
T Consensus 495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~ 574 (763)
T PLN02993 495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV 574 (763)
T ss_pred HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence 4344211 12345679999999999999998531 0 1355566778888888
Q ss_pred HhcCCC------c--ccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccC
Q 020982 115 LINEAD------R--LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECS 186 (319)
Q Consensus 115 llg~~~------~--~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~ 186 (319)
++++.. . .-++++++||.+.|++||||.|+ +..+.+..|++++.+|...+....
T Consensus 575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~----------------- 636 (763)
T PLN02993 575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYN----------------- 636 (763)
T ss_pred HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCC-----------------
Confidence 887521 1 13578999999999999999875 344444445566666644432110
Q ss_pred CCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCC------------CCC
Q 020982 187 IDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL------------RKP 254 (319)
Q Consensus 187 ~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp------------~k~ 254 (319)
.--..++..+||++ .|+++||+.... +..
T Consensus 637 --------------------------------------~~~~IrrAv~fLls-~Q~~DGGWGEs~~S~~~~~y~~~~~~~ 677 (763)
T PLN02993 637 --------------------------------------DCLAMRKGVHFLLT-IQRDDGGWGESYLSCPEQRYIPLEGNR 677 (763)
T ss_pred --------------------------------------CcHHHHHHHHHHHH-hcCCCCCcCcCcCcCCCcccccCCCCC
Confidence 00123667899887 599999997642 235
Q ss_pred cchHHhHHHHHHHHhcCcC
Q 020982 255 RDYYHTCYCLSGLSICQHS 273 (319)
Q Consensus 255 ~D~~~T~w~la~Lsll~~~ 273 (319)
+-++-|.|++-+|...+..
T Consensus 678 St~~qTAwAllaL~~aG~~ 696 (763)
T PLN02993 678 SNLVQTAWAMMGLIHAGQA 696 (763)
T ss_pred CchhhHHHHHHHHHHcCCC
Confidence 7789999999999888653
No 37
>PLN02993 lupeol synthase
Probab=99.42 E-value=1.5e-12 Score=134.85 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=112.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCC---CCcc--cHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCC--HH
Q 020982 2 PHLATTYAAVNALISLGGEKS---LPSI--NRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD--DE 74 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~---~~~~--dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~--~~ 74 (319)
|..-+|-.+|.+|.+++...+ .+++ ..++.++||++.|++||||.+. .+...+..|++|+.+|...|... ..
T Consensus 561 ~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~ 639 (763)
T PLN02993 561 EYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCL 639 (763)
T ss_pred CCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcH
Confidence 445678889999999975210 1122 2578999999999999999875 34677889999999998888642 35
Q ss_pred HHHHHHHHHHhccCCCCcccCCC------------CCCCchhHHHHHHHHHHHhcCCCc--ccHHHHHHHHHhcCCCCcc
Q 020982 75 LLQNVGNYILSCQTYEGGIAGEP------------GSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGG 140 (319)
Q Consensus 75 ~~~~~~~~i~s~Q~~DGGF~~~p------------g~es~~~~Ty~Al~~L~llg~~~~--~d~~~l~~~l~~~Q~~dGG 140 (319)
..++.++||.++|++||||+... ++.|++..|.+|+.+|...|..+. .-+++.++||+++|.++|+
T Consensus 640 ~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~ 719 (763)
T PLN02993 640 AMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGD 719 (763)
T ss_pred HHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCC
Confidence 78999999999999999998741 346999999999999999986433 2378999999999999999
Q ss_pred ccC
Q 020982 141 FQG 143 (319)
Q Consensus 141 F~g 143 (319)
|-.
T Consensus 720 W~q 722 (763)
T PLN02993 720 FPQ 722 (763)
T ss_pred CCC
Confidence 864
No 38
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.41 E-value=2.5e-12 Score=132.26 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=110.0
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCC-CHHHHHHHHH
Q 020982 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGN 81 (319)
Q Consensus 3 ~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~-~~~~~~~~~~ 81 (319)
....|-.++.+|...|... .....++.++||++.|++||+|.+. .+..++..|..++.+|...|.. .....++.++
T Consensus 450 ~~d~Ta~~l~al~~~g~~~--~~~~i~rav~~L~~~Q~~dG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~ 526 (635)
T TIGR01507 450 TADVTARVLECLGSFGYDD--AWPVIERAVEYLKREQEPDGSWFGR-WGVNYLYGTGAVLSALKAVGIDTREPYIQKALA 526 (635)
T ss_pred CccHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHccCCCCCCccC-CCCccccHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 4456788888888887542 1233678999999999999998443 2345677788888888877753 3356788999
Q ss_pred HHHhccCCCCcccCC----------CCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCC
Q 020982 82 YILSCQTYEGGIAGE----------PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 144 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~----------pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr 144 (319)
||.++|++||||+.. ..+++++..|.+|+.+|...+..+...++++++||+++|++||||...
T Consensus 527 wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~dG~W~e~ 599 (635)
T TIGR01507 527 WLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQRPDGGWDEP 599 (635)
T ss_pred HHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCCCCCCCc
Confidence 999999999999853 235799999999999999998765556899999999999999999753
No 39
>PLN03012 Camelliol C synthase
Probab=99.39 E-value=2.6e-12 Score=132.75 Aligned_cols=140 Identities=18% Similarity=0.145 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHHHhCCCCC---CCcc--cHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCC--CHHH
Q 020982 3 HLATTYAAVNALISLGGEKS---LPSI--NRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL--DDEL 75 (319)
Q Consensus 3 ~l~~ty~al~~L~lLg~~~~---~~~~--dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~--~~~~ 75 (319)
..-+|-.+|.+|.+++...+ .+.+ -.++.++||++.|++||||.+..+ ...+..|.+||.+|...|.. +...
T Consensus 562 y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wg-v~y~YgT~~aL~aL~a~g~~~~~~~~ 640 (759)
T PLN03012 562 YNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWG-ICFTYGTWFALAGLAAAGKTFNDCEA 640 (759)
T ss_pred cccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCccccc-ccCCcHHHHHHHHHHHhCccCCCcHH
Confidence 34468889999999886311 1112 256799999999999999997643 34556899999999988863 3356
Q ss_pred HHHHHHHHHhccCCCCcccCCC------------CCCCchhHHHHHHHHHHHhcCCCc--ccHHHHHHHHHhcCCCCccc
Q 020982 76 LQNVGNYILSCQTYEGGIAGEP------------GSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGF 141 (319)
Q Consensus 76 ~~~~~~~i~s~Q~~DGGF~~~p------------g~es~~~~Ty~Al~~L~llg~~~~--~d~~~l~~~l~~~Q~~dGGF 141 (319)
.++.++||.+.|++|||+++.- ++.|++..|.||+.+|...|..+. .-+++.++||+++|.+||+|
T Consensus 641 Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W 720 (759)
T PLN03012 641 IRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDF 720 (759)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCC
Confidence 8899999999999999999742 346999999999999999987532 34799999999999999998
Q ss_pred cC
Q 020982 142 QG 143 (319)
Q Consensus 142 ~g 143 (319)
..
T Consensus 721 ~q 722 (759)
T PLN03012 721 PQ 722 (759)
T ss_pred CC
Confidence 64
No 40
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.39 E-value=6e-13 Score=89.64 Aligned_cols=44 Identities=39% Similarity=0.805 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 020982 74 ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 117 (319)
Q Consensus 74 ~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg 117 (319)
++++++++||.+||++||||++.|+.++|+.+||||+++|+++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 37899999999999999999999999999999999999999986
No 41
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.39 E-value=3.4e-13 Score=90.84 Aligned_cols=44 Identities=32% Similarity=0.648 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHh
Q 020982 122 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLR 165 (319)
Q Consensus 122 ~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~ 165 (319)
+|++++++||.+||++||||+++|++++|++||||++++|+||+
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999985
No 42
>PLN03012 Camelliol C synthase
Probab=99.32 E-value=1.1e-10 Score=120.99 Aligned_cols=214 Identities=19% Similarity=0.212 Sum_probs=140.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCC---------------CCCeeec--cCCCCchhHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDP---------------SGAFRMH--DAGEIDVRACYTAISV 64 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~---------------dGgF~~~--~~~~~d~~~ty~al~~ 64 (319)
++++-|-+++++|.--|-.+... .--+|..+||++.|.. .|||.++ ..+-++.--|--++.+
T Consensus 416 SqvWDTa~~~qAl~~agl~~~~~-~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka 494 (759)
T PLN03012 416 SQLWDSGFALQALLASNLSNEIP-DVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKC 494 (759)
T ss_pred CcHHHHHHHHHHHHHcCCCccch-HHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHH
Confidence 57888999999998776432121 1256889999998862 2666544 2344555556555543
Q ss_pred ---HHHhcC------CCHHHHHHHHHHHHhccCCCCcccCCCC---------------------CCCchhHHHHHHHHHH
Q 020982 65 ---ASILNI------LDDELLQNVGNYILSCQTYEGGIAGEPG---------------------SEAHGGYTFCGLAAMI 114 (319)
Q Consensus 65 ---L~lLg~------~~~~~~~~~~~~i~s~Q~~DGGF~~~pg---------------------~es~~~~Ty~Al~~L~ 114 (319)
+.++.. .......+.++||+++|+.||||+.... ..+..--|-.+|.+|.
T Consensus 495 ~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~ 574 (759)
T PLN03012 495 CLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALI 574 (759)
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHH
Confidence 333221 1124567899999999999999864311 2344445777888888
Q ss_pred HhcCCCc------c--cHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccC
Q 020982 115 LINEADR------L--DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECS 186 (319)
Q Consensus 115 llg~~~~------~--d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~ 186 (319)
++++... + -+.++++||.+.|++||||.|+- .+||+|+...+|.-|....... .
T Consensus 575 ~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~W----gv~y~YgT~~aL~aL~a~g~~~-~------------- 636 (759)
T PLN03012 575 LFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNW----GICFTYGTWFALAGLAAAGKTF-N------------- 636 (759)
T ss_pred HHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccc----cccCCcHHHHHHHHHHHhCccC-C-------------
Confidence 8875321 2 25789999999999999999754 3477775555554443221000 0
Q ss_pred CCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCC------------CCC
Q 020982 187 IDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL------------RKP 254 (319)
Q Consensus 187 ~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp------------~k~ 254 (319)
.. --.++-.+||++ .|.++||+.+.. +..
T Consensus 637 -------------------------------------~~-~~Irrav~fLls-~Q~~DGGWGEs~~Sc~~~~y~~~~~~~ 677 (759)
T PLN03012 637 -------------------------------------DC-EAIRKGVHFLLA-AQKDNGGWGESYLSCPKKIYIAQEGEI 677 (759)
T ss_pred -------------------------------------Cc-HHHHHHHHHHHH-hcCCCCCcCCCCCCCCCccccCCCCCC
Confidence 00 013567799886 599999998854 234
Q ss_pred cchHHhHHHHHHHHhcCcC
Q 020982 255 RDYYHTCYCLSGLSICQHS 273 (319)
Q Consensus 255 ~D~~~T~w~la~Lsll~~~ 273 (319)
+-+..|.|++-+|...+..
T Consensus 678 S~~~qTaWAl~aLi~ag~~ 696 (759)
T PLN03012 678 SNLVQTAWALMGLIHAGQA 696 (759)
T ss_pred CcHHHHHHHHHHHHHcCCC
Confidence 6789999999999888754
No 43
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.02 E-value=2e-08 Score=94.62 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=80.9
Q ss_pred HHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhccCCCCcccCCC----------
Q 020982 31 VYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEP---------- 97 (319)
Q Consensus 31 ~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~~~~~~~~~~~i~s~Q~~DGGF~~~p---------- 97 (319)
-++.++++|++||||+.+.+..++++.|-+++-+|...+. .++...++.++||.+.|++||+|...-
T Consensus 57 g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg 136 (297)
T cd02896 57 GYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGG 136 (297)
T ss_pred HHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCC
Confidence 3444566789999998876667899999999998877653 344567889999999999999998641
Q ss_pred --CCCCchhHHHHHHHHHHHhcCCC-------cccHHHHHHHHHhcCC
Q 020982 98 --GSEAHGGYTFCGLAAMILINEAD-------RLDLDALIGWVVFRQG 136 (319)
Q Consensus 98 --g~es~~~~Ty~Al~~L~llg~~~-------~~d~~~l~~~l~~~Q~ 136 (319)
+.++++..|.+++.+|...+... ...++++++||.+.|.
T Consensus 137 ~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~ 184 (297)
T cd02896 137 VEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLP 184 (297)
T ss_pred ccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcc
Confidence 11367778888888888876532 2246899999999875
No 44
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.02 E-value=2e-10 Score=91.58 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHH
Q 020982 29 SKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTF 107 (319)
Q Consensus 29 ~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~-~~~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty 107 (319)
++.++||.+.|++||+|.... +.++..|++++.+|..++.. .....++.++||.++|++||||+..+. .+...|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred ccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHHH
Confidence 567999999999999998663 36788999999999888753 223468999999999999999997733 3344566
Q ss_pred HHHHHHHHhcCC-CcccHHHHHHHHHhcCC
Q 020982 108 CGLAAMILINEA-DRLDLDALIGWVVFRQG 136 (319)
Q Consensus 108 ~Al~~L~llg~~-~~~d~~~l~~~l~~~Q~ 136 (319)
.++.+|.+.+.. +...+++.++||.+.|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 667777666543 23347899999999874
No 45
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.92 E-value=1.2e-07 Score=88.83 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHh-------cCCCCCCeeeccCC--CCchhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhccCCCCcc
Q 020982 26 INRSKVYTFLKC-------MKDPSGAFRMHDAG--EIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGI 93 (319)
Q Consensus 26 ~dr~~~~~~i~~-------~q~~dGgF~~~~~~--~~d~~~ty~al~~L~lLg~---~~~~~~~~~~~~i~s~Q~~DGGF 93 (319)
-.+++..+||.+ .|++||+|+.+... +++++.|-+++.+|...+. .+....++.++||.+.|++||||
T Consensus 42 ~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f 121 (292)
T cd02897 42 EIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCF 121 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCC
Confidence 336777777774 79999999876433 6899999999998877653 23456788999999999999999
Q ss_pred cCC-C--------CCCCchhHHHHHHHHHHHhcCCC-cccHHHHHHHHHhcCC
Q 020982 94 AGE-P--------GSEAHGGYTFCGLAAMILINEAD-RLDLDALIGWVVFRQG 136 (319)
Q Consensus 94 ~~~-p--------g~es~~~~Ty~Al~~L~llg~~~-~~d~~~l~~~l~~~Q~ 136 (319)
+.. + +.+++...|-.++.+|...|... ...++++++||.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~ 174 (292)
T cd02897 122 REVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALD 174 (292)
T ss_pred CCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhcc
Confidence 853 1 22355667888888888888642 2236899999998765
No 46
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.70 E-value=5e-07 Score=85.08 Aligned_cols=129 Identities=12% Similarity=-0.026 Sum_probs=89.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeecc--------CC----CCchhHHHHHHHHHHHhc
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD--------AG----EIDVRACYTAISVASILN 69 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~--------~~----~~d~~~ty~al~~L~lLg 69 (319)
++.+.|-+++.+|...+....++.--.++.++||.+.|++||+|.... ++ ++++..|-+++.+|.-.+
T Consensus 79 ~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~ 158 (297)
T cd02896 79 SSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEAR 158 (297)
T ss_pred cchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhh
Confidence 456778899999987765322333335678999999999999998531 11 256777777777776665
Q ss_pred CCC-------HHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCcccc
Q 020982 70 ILD-------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 70 ~~~-------~~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~ 142 (319)
... ....++.++||.+.+.. ..+...+.-+.-+|.+.|.. ...++.+||.++|+.|||+.
T Consensus 159 ~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~~---~~~~a~~~L~~~~~~d~~~~ 225 (297)
T cd02896 159 SICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALADSP---LSHAANRKLLSLAKRDGNGW 225 (297)
T ss_pred ccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCCh---hhHHHHHHHHHHhhhCCCcc
Confidence 422 23567889999998753 12344445555567777754 46889999999999999876
Q ss_pred C
Q 020982 143 G 143 (319)
Q Consensus 143 g 143 (319)
.
T Consensus 226 ~ 226 (297)
T cd02896 226 Y 226 (297)
T ss_pred e
Confidence 4
No 47
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.52 E-value=6.6e-08 Score=76.94 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCc-ccHHHHHHHHHhcCCCCccccCC
Q 020982 77 QNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR-LDLDALIGWVVFRQGVEGGFQGR 144 (319)
Q Consensus 77 ~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~-~d~~~l~~~l~~~Q~~dGGF~gr 144 (319)
+++++||.+-|++||||+.. .+++...|++++.+|..++.... .-++++++||+++|++||||...
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~--~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYN--WGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYS 68 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-T
T ss_pred cccccccccccccccccccc--ccccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 57899999999999999765 33678899999999999885321 23699999999999999999966
No 48
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=98.50 E-value=6.4e-07 Score=90.64 Aligned_cols=137 Identities=22% Similarity=0.251 Sum_probs=104.9
Q ss_pred cHHHHHHHHHHHHHhCCCCC---CCccc--HHHHHHHHHhcCCCCCCeeeccCCCCchhHHH---HHHHHHHHhcCC--C
Q 020982 3 HLATTYAAVNALISLGGEKS---LPSIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACY---TAISVASILNIL--D 72 (319)
Q Consensus 3 ~l~~ty~al~~L~lLg~~~~---~~~~d--r~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty---~al~~L~lLg~~--~ 72 (319)
-+.+|-.+|++|....+..+ -.++. .++.++||.+.|.+||+|.++.+ +.+|| +|+-+|...|.. +
T Consensus 561 yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~n 636 (760)
T KOG0497|consen 561 YVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYEN 636 (760)
T ss_pred ccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhc
Confidence 35678899999998876411 11121 35678899999999999988753 55555 566666666632 2
Q ss_pred HHHHHHHHHHHHhccCCCCcccCC------------CCCCCchhHHHHHHHHHHHhcCCCc--ccHHHHHHHHHhcCCCC
Q 020982 73 DELLQNVGNYILSCQTYEGGIAGE------------PGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVE 138 (319)
Q Consensus 73 ~~~~~~~~~~i~s~Q~~DGGF~~~------------pg~es~~~~Ty~Al~~L~llg~~~~--~d~~~l~~~l~~~Q~~d 138 (319)
-...++.++|+.+.|++|||+|.. .|..+++..|.+|+.+|.+.|..+. .-..|+++.|...|-++
T Consensus 637 c~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~n 716 (760)
T KOG0497|consen 637 CEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLEN 716 (760)
T ss_pred cHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhccccc
Confidence 356788999999999999999974 3457899999999999999997643 35799999999999999
Q ss_pred ccccC
Q 020982 139 GGFQG 143 (319)
Q Consensus 139 GGF~g 143 (319)
|-|..
T Consensus 717 Gdfpq 721 (760)
T KOG0497|consen 717 GDFPQ 721 (760)
T ss_pred CCcch
Confidence 98864
No 49
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.49 E-value=1.1e-06 Score=81.22 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCCCCCCeeeccCC-CCchhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhccCCCCcccCCCC-----
Q 020982 28 RSKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPG----- 98 (319)
Q Consensus 28 r~~~~~~i~~~q~~dGgF~~~~~~-~~d~~~ty~al~~L~lLg~---~~~~~~~~~~~~i~s~Q~~DGGF~~~pg----- 98 (319)
.++.+++|.++|++||||+.+++. .++++.|-+++..|...+. .+....++.++||.+.|++||+|.....
T Consensus 51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~ 130 (282)
T cd02891 51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE 130 (282)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence 456788899999999999988766 7899999999998876542 3344578899999999999999976432
Q ss_pred ----CCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Q 020982 99 ----SEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG 136 (319)
Q Consensus 99 ----~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~ 136 (319)
..+....|.+++.+|...|......+.+.++||.+.+.
T Consensus 131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLD 172 (282)
T ss_pred hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhcc
Confidence 23555678889888888887544457889999998764
No 50
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.41 E-value=1.5e-05 Score=74.59 Aligned_cols=128 Identities=7% Similarity=-0.057 Sum_probs=85.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeecc---------CCCCchhHHHHHHHHHHHhcCCC
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD---------AGEIDVRACYTAISVASILNILD 72 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~---------~~~~d~~~ty~al~~L~lLg~~~ 72 (319)
++.+.|-+++.+|...+....++.--.++.++||.+.|++||+|.... +.++++..|-+++.+|...|...
T Consensus 78 ~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~ 157 (292)
T cd02897 78 GSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS 157 (292)
T ss_pred cchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc
Confidence 356889999999987764212333346789999999999999998421 11245667778888887777532
Q ss_pred -HHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhc---CCCCcccc
Q 020982 73 -DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFR---QGVEGGFQ 142 (319)
Q Consensus 73 -~~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~---Q~~dGGF~ 142 (319)
....++.++||.+.+.. ..++..+..+..+|.+.|.. ..+++++++.+. +..+|++.
T Consensus 158 ~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~~~---~~~~~~~~l~~~~~~~~~~~~W~ 218 (292)
T cd02897 158 ERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAGSE---KRPEALKKLDELAISEDGTKHWS 218 (292)
T ss_pred ccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhccCCCCCCC
Confidence 34568899999987753 23566677777888888832 245666655543 44445554
No 51
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.20 E-value=8.4e-06 Score=75.41 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=69.4
Q ss_pred HHHHHHHHHhccCCCCcccCCCCC-CCchhHHHHHHHHHHHhcCCCccc---HHHHHHHHHhcCCCCccccCCCC-----
Q 020982 76 LQNVGNYILSCQTYEGGIAGEPGS-EAHGGYTFCGLAAMILINEADRLD---LDALIGWVVFRQGVEGGFQGRTN----- 146 (319)
Q Consensus 76 ~~~~~~~i~s~Q~~DGGF~~~pg~-es~~~~Ty~Al~~L~llg~~~~~d---~~~l~~~l~~~Q~~dGGF~gr~~----- 146 (319)
.++.+++|.++|++||||+..++. +++...|.+++..|..++....++ ++++++||.+.|.+||+|.....
T Consensus 51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~ 130 (282)
T cd02891 51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE 130 (282)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence 567889999999999999998887 899999999999998776533333 68899999999999999975432
Q ss_pred ----CCCchhhhhHHHHHHHHHhh
Q 020982 147 ----KLVDGCYSFWQGGVFALLRR 166 (319)
Q Consensus 147 ----~~~D~~yt~~~~asL~lL~~ 166 (319)
...+...+-+++.+|...+.
T Consensus 131 ~~~~~~~~~~~tA~al~~L~~~g~ 154 (282)
T cd02891 131 MKGGVDDSVSLTAYVLIALAEAGK 154 (282)
T ss_pred hcCCcCCCcchHHHHHHHHHHhcc
Confidence 12333456666666655443
No 52
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=97.84 E-value=0.00024 Score=72.45 Aligned_cols=143 Identities=14% Similarity=0.162 Sum_probs=98.8
Q ss_pred CcccHHHHHHH---HHhcCCCCCCeeecc----------------C-----CCCchhHHHHHHHHHHHhcCCCH------
Q 020982 24 PSINRSKVYTF---LKCMKDPSGAFRMHD----------------A-----GEIDVRACYTAISVASILNILDD------ 73 (319)
Q Consensus 24 ~~~dr~~~~~~---i~~~q~~dGgF~~~~----------------~-----~~~d~~~ty~al~~L~lLg~~~~------ 73 (319)
..++++++.++ |..+|.++|||.... . .+.-+.-|-.++.+|......-+
T Consensus 507 ~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~E 586 (760)
T KOG0497|consen 507 EKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKE 586 (760)
T ss_pred CCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHH
Confidence 35677776555 778899999997431 0 13455677778888877653221
Q ss_pred --HHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCC--CcccHHHHHHHHHhcCCCCccccCCCCC--
Q 020982 74 --ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA--DRLDLDALIGWVVFRQGVEGGFQGRTNK-- 147 (319)
Q Consensus 74 --~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~--~~~d~~~l~~~l~~~Q~~dGGF~gr~~~-- 147 (319)
...++.++||.+.|.+||++-+.-+ ---...|+-|+.+|.-.|+. ....++++++||++.|+.|||++.....
T Consensus 587 i~~~i~~av~~ie~~Q~~DGSWyGsWg-vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp 665 (760)
T KOG0497|consen 587 IEKSIEKAVEFIEKLQLPDGSWYGSWG-VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCP 665 (760)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccchhh-HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCc
Confidence 2356799999999999999855332 12233455666667777753 2235799999999999999999765421
Q ss_pred ----------CCchhhhhHHHHHHHHHhhh
Q 020982 148 ----------LVDGCYSFWQGGVFALLRRF 167 (319)
Q Consensus 148 ----------~~D~~yt~~~~asL~lL~~~ 167 (319)
.+.+--|.|++.+|-+-++.
T Consensus 666 ~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~ 695 (760)
T KOG0497|consen 666 EKRYIPLEGNKSNVVQTAWALMALIMAGQA 695 (760)
T ss_pred cccccccccccccchhHHHHHHHHHhcCCc
Confidence 35667789999999887765
No 53
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.48 E-value=0.00059 Score=62.56 Aligned_cols=140 Identities=19% Similarity=0.193 Sum_probs=84.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccC-------C--CCchhHHHHHHHHHHHhcCC-
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA-------G--EIDVRACYTAISVASILNIL- 71 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~-------~--~~d~~~ty~al~~L~lLg~~- 71 (319)
++.+.|=+++..|......-.++.-..++.++||.+.|++||+|..... + +.++..|-+.+.+|.-.+..
T Consensus 25 ~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~ 104 (246)
T PF07678_consen 25 SSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLC 104 (246)
T ss_dssp BBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCH
T ss_pred ccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhc
Confidence 5778899999998877753112333357889999999999999975311 1 23444544444444333311
Q ss_pred ---C---H------------------------------------HHHHHHHHHHHhccCCCCcccCC---C---------
Q 020982 72 ---D---D------------------------------------ELLQNVGNYILSCQTYEGGIAGE---P--------- 97 (319)
Q Consensus 72 ---~---~------------------------------------~~~~~~~~~i~s~Q~~DGGF~~~---p--------- 97 (319)
. . ...+++.+-|.+....+||...- .
T Consensus 105 ~~~~~~~~~~i~kA~~~L~~~~~~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~ 184 (246)
T PF07678_consen 105 DSEKPEYENAINKALNYLERHLDNIQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPW 184 (246)
T ss_dssp TTTHHCHHHHHHHHHHHHHHHHGCTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTT
T ss_pred cccchhhHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccc
Confidence 0 0 12234555566555556554211 1
Q ss_pred --CCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccC
Q 020982 98 --GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 143 (319)
Q Consensus 98 --g~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~g 143 (319)
+...++..|-+|+.++... .+......+++||.+.|+..|||+.
T Consensus 185 ~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~~Ggf~S 230 (246)
T PF07678_consen 185 SRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNSGGGFGS 230 (246)
T ss_dssp T-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTTTSSTSS
T ss_pred cccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCCccCc
Confidence 1113567788888666655 3344678899999999999999984
No 54
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.39 E-value=0.00074 Score=61.89 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=72.7
Q ss_pred HHHHhcCCCCCCeeec-cCCCCchhHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhccCCCCcccCCC---CC------
Q 020982 33 TFLKCMKDPSGAFRMH-DAGEIDVRACYTAISVASILNIL---DDELLQNVGNYILSCQTYEGGIAGEP---GS------ 99 (319)
Q Consensus 33 ~~i~~~q~~dGgF~~~-~~~~~d~~~ty~al~~L~lLg~~---~~~~~~~~~~~i~s~Q~~DGGF~~~p---g~------ 99 (319)
+-+++.+++||+|... .+.+++++.|-+++-.+...... ++...++.++||.+.|++||.|.... +.
T Consensus 4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~ 83 (246)
T PF07678_consen 4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGV 83 (246)
T ss_dssp HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGG
T ss_pred HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCC
Confidence 4467789999999988 66789999999999998887643 34557889999999999999997531 11
Q ss_pred CCchhHHHHHHHHHHHhcCC-------CcccHHHHHHHHHhc
Q 020982 100 EAHGGYTFCGLAAMILINEA-------DRLDLDALIGWVVFR 134 (319)
Q Consensus 100 es~~~~Ty~Al~~L~llg~~-------~~~d~~~l~~~l~~~ 134 (319)
+.++..|...+.+|.-.+.. ....++++++||.+.
T Consensus 84 ~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 84 EDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERH 125 (246)
T ss_dssp THHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHH
T ss_pred CCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHh
Confidence 23555666666666665522 112468899999765
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=97.06 E-value=0.00064 Score=68.07 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=86.8
Q ss_pred ccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhccCCCCcccCCC------
Q 020982 26 INRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD--DELLQNVGNYILSCQTYEGGIAGEP------ 97 (319)
Q Consensus 26 ~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~--~~~~~~~~~~i~s~Q~~DGGF~~~p------ 97 (319)
-..++.++||++.|.++|.|.+..+ .-.+..+-.++..+++.|... ..-+.+++.|+.+||++|||++..-
T Consensus 352 ~~i~~a~e~LL~~Q~~~GsW~g~w~-v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~ 430 (517)
T COG1657 352 QPIERALEWLLSDQEPDGSWYGRWG-VCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDP 430 (517)
T ss_pred CcccHHHhhhhhhccccCceeeEEE-EEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccc
Confidence 3467889999999999999877632 234455566666677777533 3457889999999999999998741
Q ss_pred ---C-CCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCC
Q 020982 98 ---G-SEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT 145 (319)
Q Consensus 98 ---g-~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~ 145 (319)
+ .++-...|-+|+..+....+....-++..++++.+.|.++|..+.++
T Consensus 431 ~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~~ 482 (517)
T COG1657 431 VYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREAE 482 (517)
T ss_pred ccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccce
Confidence 1 23444577888877776665533336778899999999999887655
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=96.27 E-value=0.011 Score=59.40 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=98.7
Q ss_pred CCCCeeeccC--CCCchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCCCcccCCCC-------------------C
Q 020982 41 PSGAFRMHDA--GEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPG-------------------S 99 (319)
Q Consensus 41 ~dGgF~~~~~--~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s~Q~~DGGF~~~pg-------------------~ 99 (319)
..|+++.+.. +-+|...|=-++..+. +..+..+.+..++||...|+..|||...+- .
T Consensus 248 ~~g~W~f~~~~~~ypd~d~T~~~~~al~--~~~~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~ 325 (517)
T COG1657 248 SPGGWGFSNINTGYPDADDTAGVVRALI--GVQSLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVD 325 (517)
T ss_pred CCCccceeecccCCCCchhhhHHHHHHH--hhcchhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcccccc
Confidence 4566665533 3344444444443333 333445677799999999999999975211 0
Q ss_pred CCchhHHHHHHHHHHHhcCC-C---cccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCC
Q 020982 100 EAHGGYTFCGLAAMILINEA-D---RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESP 175 (319)
Q Consensus 100 es~~~~Ty~Al~~L~llg~~-~---~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~ 175 (319)
.+-+.-|-..+..|..++.. + ...++++++||++.|.++|.+-|+ ...||+|-...+++.+........
T Consensus 326 ~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~----w~v~~iY~~s~a~~~l~~~g~~~~--- 398 (517)
T COG1657 326 PSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGR----WGVCYIYGTSGALSALALVGETDE--- 398 (517)
T ss_pred CCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeE----EEEEEEEehhhhhhhhhccCcccc---
Confidence 11111112222222222211 1 345789999999999999987653 567899988888888765421100
Q ss_pred CccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCCCCCc
Q 020982 176 TPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPR 255 (319)
Q Consensus 176 ~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp~k~~ 255 (319)
...-..+++.|+.+ +|.++||+..--+..+
T Consensus 399 -------------------------------------------------~~~~v~~~~~~l~~-~~~~~~Gw~e~~~~~~ 428 (517)
T COG1657 399 -------------------------------------------------NEVLVRKLISWLVS-KQMPDGGWGEAKEAIS 428 (517)
T ss_pred -------------------------------------------------chHHHHHHHHHhhh-ccccCCCccccccccc
Confidence 00123567888665 5999999999877777
Q ss_pred chHHhH
Q 020982 256 DYYHTC 261 (319)
Q Consensus 256 D~~~T~ 261 (319)
|..|++
T Consensus 429 ~~~~~~ 434 (517)
T COG1657 429 DPVYTG 434 (517)
T ss_pred cccccc
Confidence 766654
No 57
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=90.97 E-value=0.69 Score=43.47 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=54.0
Q ss_pred CCchhHHHHHHHHHHHhcC--CC---HHHHHHHHHHHHhccCCCCcccCC-CC-CCCchhHHHH---HHHHHHHhcCC--
Q 020982 52 EIDVRACYTAISVASILNI--LD---DELLQNVGNYILSCQTYEGGIAGE-PG-SEAHGGYTFC---GLAAMILINEA-- 119 (319)
Q Consensus 52 ~~d~~~ty~al~~L~lLg~--~~---~~~~~~~~~~i~s~Q~~DGGF~~~-pg-~es~~~~Ty~---Al~~L~llg~~-- 119 (319)
..|-..|+..+.-|.-+-. .+ ..-..+.++||++.|.++|||... |- ..-+..-||. .+.++.+|...
T Consensus 40 TiDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~ 119 (290)
T TIGR02474 40 TIDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIAN 119 (290)
T ss_pred cccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHh
Confidence 4566677777665554411 11 234678999999999999999865 21 1111111221 23444444211
Q ss_pred --C---cc----------cHHHHHHHHHhcCCCCcccc
Q 020982 120 --D---RL----------DLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 120 --~---~~----------d~~~l~~~l~~~Q~~dGGF~ 142 (319)
. .+ -++|.++||++.|..+||..
T Consensus 120 ~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~ 157 (290)
T TIGR02474 120 GKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKL 157 (290)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcC
Confidence 0 11 25789999999999888765
No 58
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=90.77 E-value=2.3 Score=44.39 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=80.8
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 81 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~ 81 (319)
++|..+|+++.+|+.||.+ ..+.+.+.+++.+...+. .+++-..|+|+.+...|+.... ..+++.+
T Consensus 47 ~dLes~yyav~glk~Lg~~----~~~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~C~~~-~~~~~~~ 112 (636)
T PF05817_consen 47 SDLESAYYAVLGLKLLGIK----VPDSKAACKFLKKALDES---------SNDLESLFYAASASKALKCKVS-VSNEVKS 112 (636)
T ss_pred ccHHHHHHHHhhHHHhCCC----CCChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcCCccc-CcHHHHH
Confidence 5789999999999999964 345888999998754332 1468899999999999984322 1233444
Q ss_pred HHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCC-CcccHHHHHHHHHhcCCCCc
Q 020982 82 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA-DRLDLDALIGWVVFRQGVEG 139 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~-~~~d~~~l~~~l~~~Q~~dG 139 (319)
-+..--+.| +....-|+|+.+|..+|.. ...|.++.++-|...+..|.
T Consensus 113 ~l~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd 161 (636)
T PF05817_consen 113 LLKAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD 161 (636)
T ss_pred HHHHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc
Confidence 444433333 4667799999999999853 12377888888888777644
No 59
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=86.66 E-value=3.9 Score=38.49 Aligned_cols=109 Identities=13% Similarity=0.154 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCCCCCeeec-c--CC------CCchhHHHHHHHHHHHhcC-------CC-------HHHHHHHHHHHH
Q 020982 28 RSKVYTFLKCMKDPSGAFRMH-D--AG------EIDVRACYTAISVASILNI-------LD-------DELLQNVGNYIL 84 (319)
Q Consensus 28 r~~~~~~i~~~q~~dGgF~~~-~--~~------~~d~~~ty~al~~L~lLg~-------~~-------~~~~~~~~~~i~ 84 (319)
-++-++||++.|.++|||.-. + ++ -+|..++ -++..|..+.. .+ ..-.++.++||+
T Consensus 69 ~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~-~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~IL 147 (290)
T TIGR02474 69 ARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMV-NVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECIL 147 (290)
T ss_pred HHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHH-HHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999632 1 11 1233333 22222222211 01 123568999999
Q ss_pred hccCCCCcc----cCC-------CC----CCCchhHHHHHHHHHHHh-cCC--Cc---ccHHHHHHHHHhcCCC
Q 020982 85 SCQTYEGGI----AGE-------PG----SEAHGGYTFCGLAAMILI-NEA--DR---LDLDALIGWVVFRQGV 137 (319)
Q Consensus 85 s~Q~~DGGF----~~~-------pg----~es~~~~Ty~Al~~L~ll-g~~--~~---~d~~~l~~~l~~~Q~~ 137 (319)
.+|-.+||. +.. |- .|.-..++.-.+.++.+| ... +. --++.+++|+.+.+.+
T Consensus 148 ktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~ 221 (290)
T TIGR02474 148 KTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIR 221 (290)
T ss_pred HhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence 999888755 321 11 122222233333333333 222 11 1257889999887754
No 60
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=85.48 E-value=3.2 Score=39.68 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC--CC-H-------HHHHHHHHHHHhccCCCCcccCCC
Q 020982 28 RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI--LD-D-------ELLQNVGNYILSCQTYEGGIAGEP 97 (319)
Q Consensus 28 r~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~--~~-~-------~~~~~~~~~i~s~Q~~DGGF~~~p 97 (319)
...+.+++...+.. ..|+.. ..+-.+-.|+.+|..+.. .. + ...+++++.|.+.|.+||-||
T Consensus 164 ~~~v~kL~~~~~~~-~~~~~~----~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G--- 235 (326)
T PF01122_consen 164 LSVVAKLLKAENHN-FYHGSQ----FSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG--- 235 (326)
T ss_dssp HHHHHHHHHHHHSS-TSS-ST----CHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS---
T ss_pred HHHHHHHHHHHHhh-cccCCC----CCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc---
Confidence 34455555544333 333322 355555556666655532 12 1 124568888899999999997
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCc---ccHHHHHHHHHhcCCCCcccc
Q 020982 98 GSEAHGGYTFCGLAAMILINEADR---LDLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 98 g~es~~~~Ty~Al~~L~llg~~~~---~d~~~l~~~l~~~Q~~dGGF~ 142 (319)
++.+|--|+++|...+.... -+-.++.++|++-+ .+|.|+
T Consensus 236 ----NiySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~ 278 (326)
T PF01122_consen 236 ----NIYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQ 278 (326)
T ss_dssp ----STTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-
T ss_pred ----chhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCC
Confidence 57889999999999887432 23567888888743 589997
No 61
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=75.77 E-value=8.4 Score=43.95 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=62.8
Q ss_pred CchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-------ccCCCCcccCCCC--CCCchhHHHHHHHHHHHhcCCCccc
Q 020982 53 IDVRACYTAISVASILNILDDELLQNVGNYILS-------CQTYEGGIAGEPG--SEAHGGYTFCGLAAMILINEADRLD 123 (319)
Q Consensus 53 ~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s-------~Q~~DGGF~~~pg--~es~~~~Ty~Al~~L~llg~~~~~d 123 (319)
..+..++.++-=|...+.++++.++++.+||.. -+++||.|+..-. ......-|...+-++......-.+|
T Consensus 943 i~faPni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id 1022 (1436)
T KOG1366|consen 943 INFAPNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFID 1022 (1436)
T ss_pred ecccchhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEec
Confidence 456667777666666666667777788888775 3478999986544 4455666666666666554432333
Q ss_pred ---HHHHHHHHHhcCCCCcccc
Q 020982 124 ---LDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 124 ---~~~l~~~l~~~Q~~dGGF~ 142 (319)
+.+++.|+.++|..+|.|.
T Consensus 1023 ~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 1023 PNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred HHHHHHHHHHHHHhhccCceEe
Confidence 5789999999999999985
No 62
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=69.03 E-value=13 Score=42.55 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHh-------cCCCCCCeeeccC--CCCchhHHHHHHHHHHHhcCC
Q 020982 1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC-------MKDPSGAFRMHDA--GEIDVRACYTAISVASILNIL 71 (319)
Q Consensus 1 ~~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~-------~q~~dGgF~~~~~--~~~d~~~ty~al~~L~lLg~~ 71 (319)
|-+++.+.+++.-|...+. +...-+++..+||.. .+++||+|...-. .....|-|-+.+-++......
T Consensus 942 Mi~faPni~v~~YL~~t~q---~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~ 1018 (1436)
T KOG1366|consen 942 MINFAPNIYVLKYLPKTNQ---LTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEY 1018 (1436)
T ss_pred eecccchhhHHHHHhhhhc---cChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCc
Confidence 3456677777777777665 333446777777765 3568999986532 345667776766666554432
Q ss_pred ---CHHHHHHHHHHHHhccCCCCcccC
Q 020982 72 ---DDELLQNVGNYILSCQTYEGGIAG 95 (319)
Q Consensus 72 ---~~~~~~~~~~~i~s~Q~~DGGF~~ 95 (319)
++.-..++.+|+.+.|.++|.|-.
T Consensus 1019 i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 1019 IFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred eEecHHHHHHHHHHHHHhhccCceEec
Confidence 344567899999999999999964
No 63
>PLN02592 ent-copalyl diphosphate synthase
Probab=55.50 E-value=22 Score=38.29 Aligned_cols=56 Identities=5% Similarity=0.016 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCCCCeeeccC--CCCchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 020982 29 SKVYTFLKCMKDPSGAFRMHDA--GEIDVRACYTAISVASILNILDDELLQNVGNYILS 85 (319)
Q Consensus 29 ~~~~~~i~~~q~~dGgF~~~~~--~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s 85 (319)
.+.++||.+.|.+||+|+.... ..-.+-.|-.||.+|.--+.. +...++...||.+
T Consensus 118 P~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-~~~i~rGl~fi~~ 175 (800)
T PLN02592 118 PSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH-PEKCEKGMSFFRE 175 (800)
T ss_pred HHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc-HHHHHHHHHHHHH
Confidence 4789999999999999987521 113456676766666443332 2344667777774
No 64
>PLN02279 ent-kaur-16-ene synthase
Probab=54.90 E-value=20 Score=38.48 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCCCCeeeccCCC----CchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 020982 29 SKVYTFLKCMKDPSGAFRMHDAGE----IDVRACYTAISVASILNILDDELLQNVGNYILS 85 (319)
Q Consensus 29 ~~~~~~i~~~q~~dGgF~~~~~~~----~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s 85 (319)
...++||.+-|.+||+|+...... -.+-.|-.||.+|.--+... ...++-+.||.+
T Consensus 76 p~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~-~~~~~gl~fi~~ 135 (784)
T PLN02279 76 PECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGE-EQINKGLQFIEL 135 (784)
T ss_pred hHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCc-ccchhhHHHHHH
Confidence 678999999999999998652211 24567777777776554332 223444567663
No 65
>PLN02592 ent-copalyl diphosphate synthase
Probab=53.92 E-value=35 Score=36.76 Aligned_cols=58 Identities=10% Similarity=-0.063 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCC--CchhHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Q 020982 75 LLQNVGNYILSCQTYEGGIAGEPGSE--AHGGYTFCGLAAMILINEADRLDLDALIGWVVF 133 (319)
Q Consensus 75 ~~~~~~~~i~s~Q~~DGGF~~~pg~e--s~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~ 133 (319)
...++++||.+-|.+|||+|..+... --+..|-.||.+|.-=+.. +--+++.+.||.+
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-~~~i~rGl~fi~~ 175 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH-PEKCEKGMSFFRE 175 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc-HHHHHHHHHHHHH
Confidence 45579999999999999998753311 2234677766666442222 1224667777754
No 66
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=48.65 E-value=16 Score=34.41 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHhcCCCc-----ccHHHHHHHHHhcCCCCccccCC
Q 020982 102 HGGYTFCGLAAMILINEADR-----LDLDALIGWVVFRQGVEGGFQGR 144 (319)
Q Consensus 102 ~~~~Ty~Al~~L~llg~~~~-----~d~~~l~~~l~~~Q~~dGGF~gr 144 (319)
|-..|...+.-|+-+-.... --..+.++||++-|.++|||-.+
T Consensus 37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~ 84 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQF 84 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSE
T ss_pred cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCcc
Confidence 55667777777765532211 12578999999999999999764
No 67
>PLN02279 ent-kaur-16-ene synthase
Probab=48.26 E-value=32 Score=37.03 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCCCcccCCCCCC---Cc-h
Q 020982 28 RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE---AH-G 103 (319)
Q Consensus 28 r~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s~Q~~DGGF~~~pg~e---s~-~ 103 (319)
-+.+++-|++.-+.- .. .+....|-|...+=.. +........++++||.+-|.+||++|..+... -| +
T Consensus 35 ~~~~~~~i~~~l~~~---e~----s~s~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~l 106 (784)
T PLN02279 35 FEGTKERIKKMFDKV---EL----SVSSYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDAL 106 (784)
T ss_pred chhHHHHHHHHhccC---cC----CCchhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhh
Confidence 355666666543321 11 1334456666444333 33222345679999999999999998653322 22 3
Q ss_pred hHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Q 020982 104 GYTFCGLAAMILINEADRLDLDALIGWVVF 133 (319)
Q Consensus 104 ~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~ 133 (319)
..|-.||.+|.-=+.. +..+++.+.||..
T Consensus 107 l~TlAcvlAL~~w~~~-~~~~~~gl~fi~~ 135 (784)
T PLN02279 107 SSTLASILALKKWGVG-EEQINKGLQFIEL 135 (784)
T ss_pred HHHHHHHHHHHHHhcC-cccchhhHHHHHH
Confidence 4677777777654432 1123555566653
No 68
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=39.02 E-value=4.9e+02 Score=27.44 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHH--HHHHHH
Q 020982 4 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDEL--LQNVGN 81 (319)
Q Consensus 4 l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~--~~~~~~ 81 (319)
+...|+++.+|..||.+ ++.-|.+++++-|...+..|. .+..+=.|+.++..|+...... .+++-+
T Consensus 124 ~~~iy~av~sl~~lg~~--v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~al~~aa~L~~~a~l~~~~~~ieD 191 (636)
T PF05817_consen 124 VSQIYYAVSSLKLLGLK--VDEADSDEVVKALQASLKKDD----------SLLSLGYALHAAAQLSKQADLADIVERIED 191 (636)
T ss_pred HHHHHHHHHHHHHcCCC--cccccHHHHHHHHHHHhcccc----------cHHHHHHHHHHHHhhccchhhhHHHHHHHH
Confidence 44567888888888754 334467777777776655532 2333334444455554221100 122222
Q ss_pred HHHhccCCCCcccCCCCCCCchhHHHHHHHHHH----HhcCCCccc---HHHHHHHHHhcCCCCccccCCCCCCCchhhh
Q 020982 82 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI----LINEADRLD---LDALIGWVVFRQGVEGGFQGRTNKLVDGCYS 154 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~----llg~~~~~d---~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt 154 (319)
=+...-.-||..-...|+ ...|---+.+.. ..|+...+. +-++.+|+++|.+. .+.+-.
T Consensus 192 ~v~qaDEv~~~~LqFegg---Ls~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr~v-----------~s~k~a 257 (636)
T PF05817_consen 192 AVAQADEVDGKYLQFEGG---LSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRRSV-----------QSPKDA 257 (636)
T ss_pred HHHhhhhhcccceeecCC---chhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCCC-----------CCHHHH
Confidence 222211222222222222 222333333332 234444444 44678899998653 456677
Q ss_pred hHHHHHHHHHhhh
Q 020982 155 FWQGGVFALLRRF 167 (319)
Q Consensus 155 ~~~~asL~lL~~~ 167 (319)
|-.+.+|+.|...
T Consensus 258 ~~l~~al~~L~~N 270 (636)
T PF05817_consen 258 FNLLEALKSLSSN 270 (636)
T ss_pred HHHHHHHHHHhhC
Confidence 8888888887653
No 69
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=32.23 E-value=2.8e+02 Score=26.07 Aligned_cols=65 Identities=9% Similarity=0.047 Sum_probs=41.2
Q ss_pred HHHHHHHHHhccCCCCcccCC---CC--CCCchhHHHHHHHHHHH---hcCCCc----ccHHHHHHHHHhc-CCCCcc
Q 020982 76 LQNVGNYILSCQTYEGGIAGE---PG--SEAHGGYTFCGLAAMIL---INEADR----LDLDALIGWVVFR-QGVEGG 140 (319)
Q Consensus 76 ~~~~~~~i~s~Q~~DGGF~~~---pg--~es~~~~Ty~Al~~L~l---lg~~~~----~d~~~l~~~l~~~-Q~~dGG 140 (319)
.+++++.|...|.+||.+... |. ...+...|-.+..+|.. .|..+. .-.+++.+.|.+. -++||.
T Consensus 217 ~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 217 AKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 456788889999999988643 33 45566666665555532 333321 1257888999998 667775
No 70
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=32.14 E-value=89 Score=30.01 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=58.3
Q ss_pred HHHHHHHhCCCCCCCccc-------HHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCC---HHHHHHH
Q 020982 10 AVNALISLGGEKSLPSIN-------RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD---DELLQNV 79 (319)
Q Consensus 10 al~~L~lLg~~~~~~~~d-------r~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~---~~~~~~~ 79 (319)
|+.+|..+.+...-..-+ .+++.+.|.+.|.++|.|+. +..|=-|+.+|...+... ..+..+.
T Consensus 192 A~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~ 264 (326)
T PF01122_consen 192 AVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKA 264 (326)
T ss_dssp HHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHH
T ss_pred HHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHH
Confidence 455666666532110112 34556667777889999974 446777777776666532 2567788
Q ss_pred HHHHHhccCCCCcccCCCCCCCchhHHHHHHHHH-HHhcCCCcccHHHHHHHHHhcCCCCcccc
Q 020982 80 GNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAM-ILINEADRLDLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 80 ~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L-~llg~~~~~d~~~l~~~l~~~Q~~dGGF~ 142 (319)
.++|..- -.+|.|.. --.+.++| ++.|+ ...|+.. .+|+.++|-+.
T Consensus 265 ~~~ll~~-i~~G~F~n----------P~a~aQiLPaL~gK-TYLDv~~-----~~C~~~~~~~~ 311 (326)
T PF01122_consen 265 LDALLKE-ISQGAFQN----------PMAIAQILPALNGK-TYLDVNS-----VDCSSPDGNLN 311 (326)
T ss_dssp HHHHHHH-HTTTTT-S----------HHHHHHHHHHHTT---GGGGGS-------SSS--EE--
T ss_pred HHHHHHH-hhcCCCCC----------HHHHHHHHHHHcCC-CccccCC-----CCCCCCCCccc
Confidence 8888874 35899964 12445566 44454 4556543 56777777654
No 71
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=30.75 E-value=6.3e+02 Score=26.23 Aligned_cols=42 Identities=14% Similarity=0.001 Sum_probs=31.0
Q ss_pred CchhHHHHHHHHHHHhcCCCcc-----------cHHHHHHHHHhcCCCCcccc
Q 020982 101 AHGGYTFCGLAAMILINEADRL-----------DLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 101 s~~~~Ty~Al~~L~llg~~~~~-----------d~~~l~~~l~~~Q~~dGGF~ 142 (319)
+=...|+|....+..+|+...- ..+++.+|+.+..++.|=|.
T Consensus 531 ~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~Gll~ 583 (616)
T TIGR01577 531 PWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLGLLP 583 (616)
T ss_pred cHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCCCCc
Confidence 4557899999999988865311 34578999999888777665
No 72
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.88 E-value=6e+02 Score=24.72 Aligned_cols=133 Identities=13% Similarity=0.007 Sum_probs=75.1
Q ss_pred CCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhccCCCCcccCCCCCC
Q 020982 22 SLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSE 100 (319)
Q Consensus 22 ~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~-~~~~~~~~~~~~i~s~Q~~DGGF~~~pg~e 100 (319)
.++...|+.+++||.+.....-.... =+.+.-..-..|..+|. .+....+..++.+.+....||=|+-.|+.-
T Consensus 128 ~L~~~~k~~l~~wL~~~~~~~~~~nN------W~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~ 201 (361)
T PF10022_consen 128 PLDEEEKENLVDWLKQIRGIKPPDNN------WLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQ 201 (361)
T ss_pred hCCHHHHHHHHHHHHhcCcCCCccch------hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccC
Confidence 46777899999999976543322211 12233333334444554 344556777788888888888776655432
Q ss_pred Cch----hHHHHHHHHHHHhcCCCcc----cHHHHHHHHHhcC---CCCcccc--CCCCCCCchhhhhHHHHHHHHHh
Q 020982 101 AHG----GYTFCGLAAMILINEADRL----DLDALIGWVVFRQ---GVEGGFQ--GRTNKLVDGCYSFWQGGVFALLR 165 (319)
Q Consensus 101 s~~----~~Ty~Al~~L~llg~~~~~----d~~~l~~~l~~~Q---~~dGGF~--gr~~~~~D~~yt~~~~asL~lL~ 165 (319)
-|= +.=++.+-.+.+.+..++. -.+++.+|...-. .+||.+- || ..+|-|-+.+.+..+-
T Consensus 202 ~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~~~GR-----SltYRfA~~a~~~~~a 274 (361)
T PF10022_consen 202 FDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAPPFGR-----SLTYRFAAFAFLAAAA 274 (361)
T ss_pred CcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCccc-----cHHHHHHHHHHHHHHH
Confidence 221 1224445555566655421 1355666665533 3788764 33 3577777777776654
No 73
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=25.17 E-value=2.4e+02 Score=28.74 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCeeeccCCCCchhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHhccCCCCcccCCCCCC-----------CchhHHHH-
Q 020982 43 GAFRMHDAGEIDVRACYTAISVASILNILD--DELLQNVGNYILSCQTYEGGIAGEPGSE-----------AHGGYTFC- 108 (319)
Q Consensus 43 GgF~~~~~~~~d~~~ty~al~~L~lLg~~~--~~~~~~~~~~i~s~Q~~DGGF~~~pg~e-----------s~~~~Ty~- 108 (319)
|.+.+..-...++-.-..|++-+...-... ....+++|+.|.+||.+||=++..+... .|-.++.-
T Consensus 50 ~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ 129 (520)
T PF07944_consen 50 GEFPGWWFRGHDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGK 129 (520)
T ss_pred cCCCCCccCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhH
Q ss_pred ----HHHHHHHhcCCCcccH-HHHHHHH---HhcCCCC
Q 020982 109 ----GLAAMILINEADRLDL-DALIGWV---VFRQGVE 138 (319)
Q Consensus 109 ----Al~~L~llg~~~~~d~-~~l~~~l---~~~Q~~d 138 (319)
+++.-...|....+++ .++.+|+ .+...++
T Consensus 130 ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~ 167 (520)
T PF07944_consen 130 LLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGPE 167 (520)
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCHH
No 74
>PRK13621 psbV cytochrome c-550; Provisional
Probab=22.34 E-value=1.8e+02 Score=25.31 Aligned_cols=54 Identities=11% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhccCCCCc---ccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccC
Q 020982 74 ELLQNVGNYILSCQTYEGG---IAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 143 (319)
Q Consensus 74 ~~~~~~~~~i~s~Q~~DGG---F~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~g 143 (319)
..++.+++|++.-+..||. |+.++-. . +.+..-|.+.++.||+..-...+||++
T Consensus 107 d~I~~LV~~iknPms~kg~~~~~~~~mps--~--------------~~LSdeEL~aIAaYLL~qA~~~~~Wg~ 163 (170)
T PRK13621 107 DNIAALVAYQRDPMSYDGSEESYGCRQVP--E--------------DWMTDEELQNLAAFILRAAQKAPGWGT 163 (170)
T ss_pred HHHHHHHHHhhCCCCCCcccccccccCCc--c--------------CCCCHHHHHHHHHHHHhhhhhccCCCC
Confidence 3457899999999988873 4333211 0 334556789999999886666678874
No 75
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=20.01 E-value=1.8e+02 Score=24.80 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhccCCCCc---ccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccC
Q 020982 74 ELLQNVGNYILSCQTYEGG---IAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 143 (319)
Q Consensus 74 ~~~~~~~~~i~s~Q~~DGG---F~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~g 143 (319)
..++.+++|++.-+..||. |..++-. + ..+..-+++.++.||+..-...+||++
T Consensus 96 d~I~~Lv~~iknP~s~kG~~~~~~~~mp~--~--------------~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 96 DTIQSLVAYQRDPMSYDGSEESYGCRPVP--E--------------DWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHHHhhCCcccCcccccccccCCc--c--------------cCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 3468899999999988872 2221110 0 234455789999999887666778875
Done!