Query 020982
Match_columns 319
No_of_seqs 169 out of 1265
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7a_B Farnesyltransferase bet 100.0 2.1E-60 7.1E-65 467.8 17.3 292 1-318 137-517 (520)
2 3dra_B Geranylgeranyltransfera 100.0 6.7E-58 2.3E-62 439.8 22.3 239 1-314 91-386 (390)
3 2h6f_B Protein farnesyltransfe 100.0 9E-57 3.1E-61 439.6 19.8 269 2-318 148-417 (437)
4 1n4q_B Geranyltransferase type 100.0 5.5E-56 1.9E-60 426.7 23.7 233 2-316 120-358 (377)
5 3dss_B Geranylgeranyl transfer 100.0 2.5E-54 8.5E-59 409.5 25.5 231 2-313 93-324 (331)
6 3dss_B Geranylgeranyl transfer 100.0 5.4E-54 1.9E-58 407.2 18.7 245 2-309 45-300 (331)
7 3q7a_B Farnesyltransferase bet 100.0 3E-53 1E-57 417.0 14.3 256 2-311 87-422 (520)
8 3dra_B Geranylgeranyltransfera 100.0 2.4E-53 8.1E-58 408.2 13.2 248 2-311 30-361 (390)
9 2h6f_B Protein farnesyltransfe 100.0 8.3E-51 2.8E-55 397.4 15.3 246 3-310 100-373 (437)
10 1n4q_B Geranyltransferase type 100.0 1.4E-50 4.7E-55 389.1 15.3 247 2-309 46-331 (377)
11 2sqc_A Squalene-hopene cyclase 99.7 1.1E-16 3.6E-21 163.5 22.6 212 2-273 309-569 (631)
12 2sqc_A Squalene-hopene cyclase 99.7 5E-17 1.7E-21 165.9 18.6 210 2-270 373-624 (631)
13 1w6k_A Lanosterol synthase; cy 99.7 8.1E-16 2.8E-20 159.2 18.7 218 2-273 384-665 (732)
14 1w6k_A Lanosterol synthase; cy 99.7 1.1E-15 3.6E-20 158.4 18.4 163 2-165 452-663 (732)
15 1qqf_A Protein (complement C3D 99.4 9.5E-12 3.3E-16 114.2 15.5 135 3-137 8-173 (277)
16 2wy7_A Complement C3D fragment 99.3 4.6E-11 1.6E-15 111.5 15.1 134 4-137 25-189 (310)
17 1qqf_A Protein (complement C3D 99.0 1.2E-08 4.2E-13 93.3 15.9 140 2-143 65-259 (277)
18 2wy7_A Complement C3D fragment 98.9 3.5E-08 1.2E-12 91.9 16.0 140 2-143 81-275 (310)
19 1hzf_A Complement factor C4A; 98.8 5.2E-08 1.8E-12 93.0 14.2 106 29-134 94-226 (367)
20 2pn5_A TEP1R, thioester-contai 98.4 2.6E-06 9.1E-11 93.4 16.5 115 27-141 866-1004(1325)
21 2hr0_B Complement C3 alpha' ch 98.4 2.3E-06 7.8E-11 90.7 15.4 106 31-136 304-433 (915)
22 2bb6_A TCII, TC II, transcobal 98.1 8.8E-06 3E-10 78.3 9.1 120 6-142 138-269 (414)
23 1hzf_A Complement factor C4A; 98.1 1.1E-05 3.6E-10 76.9 9.2 88 76-163 93-195 (367)
24 2pn5_A TEP1R, thioester-contai 97.9 0.0001 3.5E-09 80.9 14.2 93 52-144 840-946 (1325)
25 4acq_A Alpha-2-macroglobulin; 97.6 0.00034 1.2E-08 77.4 13.3 105 30-134 987-1108(1451)
26 2hr0_B Complement C3 alpha' ch 97.6 0.00046 1.6E-08 73.1 13.4 140 2-143 326-520 (915)
27 4fxk_B Complement C4-A alpha c 97.6 0.00069 2.4E-08 70.2 14.3 134 2-135 337-504 (767)
28 1r76_A Pectate lyase; A-helica 97.3 0.00059 2E-08 65.4 9.1 114 28-142 83-266 (408)
29 2pmv_A Gastric intrinsic facto 97.3 0.00053 1.8E-08 65.6 8.8 100 28-142 132-245 (399)
30 4acq_A Alpha-2-macroglobulin; 97.2 0.002 6.7E-08 71.4 12.0 113 52-164 951-1089(1451)
31 2b39_A C3; thioester, immune d 97.2 0.0032 1.1E-07 70.6 13.8 132 4-135 1017-1179(1661)
32 1gxm_A Pectate lyase; mechanis 97.1 0.00027 9.2E-09 65.9 3.9 113 31-144 36-191 (332)
33 2bb6_A TCII, TC II, transcobal 96.9 0.0013 4.6E-08 63.1 6.9 112 6-141 180-301 (414)
34 1r76_A Pectate lyase; A-helica 96.7 0.0069 2.4E-07 58.0 9.6 136 6-142 150-334 (408)
35 4fxk_B Complement C4-A alpha c 96.6 0.0068 2.3E-07 62.7 10.3 65 78-142 372-439 (767)
36 3prx_B Cobra venom factor; imm 96.6 0.00032 1.1E-08 78.3 0.0 107 28-134 1025-1162(1642)
37 3cu7_A Complement C5; Mg domai 96.4 0.013 4.5E-07 65.7 11.5 107 28-134 1042-1178(1676)
38 2b39_A C3; thioester, immune d 96.2 0.03 1E-06 62.8 12.6 64 80-143 1052-1119(1661)
39 3cu7_A Complement C5; Mg domai 95.2 0.099 3.4E-06 58.7 11.9 61 83-143 1056-1120(1676)
40 1gxm_A Pectate lyase; mechanis 95.0 0.044 1.5E-06 51.0 6.8 131 6-137 75-252 (332)
41 2pmv_A Gastric intrinsic facto 94.9 0.045 1.5E-06 52.3 6.8 92 28-142 185-278 (399)
42 3prx_B Cobra venom factor; imm 94.3 0.0075 2.6E-07 67.5 0.0 63 81-143 1037-1104(1642)
43 3sdr_A Alpha-bisabolene syntha 80.8 1.9 6.4E-05 45.0 5.7 101 29-134 57-162 (817)
44 3p5p_A Taxadiene synthase; cla 71.7 5 0.00017 41.4 5.9 59 75-134 54-114 (764)
45 3s9v_A Abietadiene synthase, c 71.5 5 0.00017 41.6 5.9 59 75-134 75-135 (785)
46 3pya_A ENT-copalyl diphosphate 69.1 6.6 0.00022 40.3 6.1 58 76-134 52-111 (727)
47 3s9v_A Abietadiene synthase, c 68.9 6.5 0.00022 40.7 6.1 58 28-86 76-135 (785)
48 3pya_A ENT-copalyl diphosphate 68.9 7.8 0.00027 39.7 6.6 56 29-85 53-110 (727)
49 3p5p_A Taxadiene synthase; cla 66.5 9.1 0.00031 39.5 6.6 59 27-86 54-114 (764)
50 3sdr_A Alpha-bisabolene syntha 65.5 9.8 0.00034 39.6 6.6 59 27-86 102-162 (817)
51 3pmm_A Putative cytoplasmic pr 32.6 2E+02 0.007 26.5 9.4 68 76-143 265-341 (382)
52 3ren_A Glycosyl hydrolase, fam 28.6 3.5E+02 0.012 24.9 11.0 86 28-113 248-345 (350)
53 1wgn_A UBAP1, ubiquitin associ 28.3 68 0.0023 22.1 3.7 29 107-139 34-62 (63)
54 3k11_A Putative glycosyl hydro 25.8 2.5E+02 0.0086 26.7 8.8 68 75-142 295-372 (445)
55 4b2v_A S64; toxin, ICK; NMR {S 22.0 36 0.0012 19.5 1.2 16 243-258 5-20 (32)
No 1
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=2.1e-60 Score=467.76 Aligned_cols=292 Identities=38% Similarity=0.644 Sum_probs=235.8
Q ss_pred CCcHHHHHHHHHHHHHhCCC---CCCCccc--HHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHH
Q 020982 1 MPHLATTYAAVNALISLGGE---KSLPSIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDEL 75 (319)
Q Consensus 1 ~~~l~~ty~al~~L~lLg~~---~~~~~~d--r~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~ 75 (319)
.||+++||+||++|.+|+.+ +.++.+| |+++++||+++|++||+|.+..+++.|+++||||++++.+||..+..+
T Consensus 137 ~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~ 216 (520)
T 3q7a_B 137 IPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPEL 216 (520)
T ss_dssp CCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHH
T ss_pred CCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHH
Confidence 48999999999999999975 2366788 999999999999999999998788999999999999999999988889
Q ss_pred HHHHHHHHHhccCCCCcccC-----------------------CCCCCCchhHHHHHHHHHHHhcCC------CcccHHH
Q 020982 76 LQNVGNYILSCQTYEGGIAG-----------------------EPGSEAHGGYTFCGLAAMILINEA------DRLDLDA 126 (319)
Q Consensus 76 ~~~~~~~i~s~Q~~DGGF~~-----------------------~pg~es~~~~Ty~Al~~L~llg~~------~~~d~~~ 126 (319)
++++++||++||++|||||. .|+.|+|+++|||||++|.+|++. +.+|.++
T Consensus 217 v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~ 296 (520)
T 3q7a_B 217 LHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANA 296 (520)
T ss_dssp HTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHH
T ss_pred HHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHH
Confidence 99999999999999999999 689999999999999999999986 3689999
Q ss_pred HHHHHHhcCC---CCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccC-CCCCccccCCcccCCCCcccCcCCCccCCC
Q 020982 127 LIGWVVFRQG---VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIG-ESPTPVDQRGAECSIDNTQTTTASDVSEGD 202 (319)
Q Consensus 127 l~~~l~~~Q~---~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~-~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~ 202 (319)
+++||.+||. ++|||+||+||.+|+||+||++++|.||+.+..... .++.. ....+..+...+
T Consensus 297 l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~------~~~~~~~~~~~~------- 363 (520)
T 3q7a_B 297 ALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKK------SRIEVFEEEKEG------- 363 (520)
T ss_dssp HHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhccccccccc------cccccccccccc-------
Confidence 9999999997 469999999999999999999999999998621100 00000 000000000000
Q ss_pred CCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCC---CccCCCCCCCcchHHhHHHHHHHHhcCcCCCCC--
Q 020982 203 GSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPR---GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKD-- 277 (319)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~---GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~-- 277 (319)
++- +. .....++|+++|++|||.|+|.+. |||+++|+|.||+|||||++++||++++....+
T Consensus 364 ----~w~---~~------~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~~~~~ 430 (520)
T 3q7a_B 364 ----DWE---DV------PPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSPS 430 (520)
T ss_dssp --------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEEECHH
T ss_pred ----ccc---cc------cccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCChh
Confidence 000 00 001247899999999998889886 999999999999999999999999999865321
Q ss_pred --------CCC----C-------CC---------------------------CccccCCCCCCCcccccccccCHHHHHH
Q 020982 278 --------EDS----S-------PL---------------------------PRAVLGPYSNVLEPVHPVFNIVLDRYHE 311 (319)
Q Consensus 278 --------~~~----~-------~~---------------------------~~~i~~~~~~~~~~~h~~~~i~~~~~~~ 311 (319)
.+. + .+ .+.|.|.|+|.+.++||+|||+..++++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~g~~~n~~~~~hp~~ni~~~~~~~ 510 (520)
T 3q7a_B 431 TVSSNRLKFDASKGLPAVKPVAPGGGWKNEDERQNARREIWANALGWIEEEGGEIIVGGKDNRINTTTPVFNILGLRLKP 510 (520)
T ss_dssp HHHHHHHHCCTTCCCCCCCCSSTTCSCSSHHHHHHHHHHHHHHHTCEEECTTCCCCTTCGGGCCCCBCTTTCSBHHHHHH
T ss_pred hHHHhhhccccccccccccccccccccccchhhHHHHHHHHhhhhccccccCCceeecCccccccCCCCcccCCHHHHHH
Confidence 011 1 00 1235677899999999999999999999
Q ss_pred HHhhhcc
Q 020982 312 AHEFFSR 318 (319)
Q Consensus 312 ~~~~~~~ 318 (319)
|.+||..
T Consensus 511 ~~~~f~~ 517 (520)
T 3q7a_B 511 FINYFYC 517 (520)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999964
No 2
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=6.7e-58 Score=439.81 Aligned_cols=239 Identities=31% Similarity=0.478 Sum_probs=215.7
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCC---C-CCCeeecc-----------CCCCchhHHHHHHHHH
Q 020982 1 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD---P-SGAFRMHD-----------AGEIDVRACYTAISVA 65 (319)
Q Consensus 1 ~~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~---~-dGgF~~~~-----------~~~~d~~~ty~al~~L 65 (319)
+|||++||+||++|.+||++ .++.+||+++++||.++|+ + ||+|.... +++.|+|++|||++++
T Consensus 91 ~~hl~~Ty~Al~~L~ilg~~-~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~ 169 (390)
T 3dra_B 91 CPNLSSTLFALYNLLILKSP-YHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIR 169 (390)
T ss_dssp CCBHHHHHHHHHHHHHTTCC-GGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCch-hhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHH
Confidence 48999999999999999986 3578999999999999998 6 99999543 5799999999999999
Q ss_pred HHhcCCC-------------HHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 020982 66 SILNILD-------------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 132 (319)
Q Consensus 66 ~lLg~~~-------------~~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~ 132 (319)
.||+..+ .++++++++||++||++||||+..|+.|||+++|||||++|.+|++. .+|++++++||+
T Consensus 170 ~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~ 248 (390)
T 3dra_B 170 HLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLI 248 (390)
T ss_dssp HHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHH
T ss_pred HHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHH
Confidence 9999876 57889999999999999999999999999999999999999999987 478999999999
Q ss_pred hcCC----------------------------CCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcc
Q 020982 133 FRQG----------------------------VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAE 184 (319)
Q Consensus 133 ~~Q~----------------------------~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~ 184 (319)
+||. ++|||+|||||.+|+|||||++++|+||++..
T Consensus 249 ~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~---------------- 312 (390)
T 3dra_B 249 HRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNF---------------- 312 (390)
T ss_dssp TTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGG----------------
T ss_pred HcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhcccc----------------
Confidence 9998 47999999999999999999999999998510
Q ss_pred cCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCC-CCccCCCCCCCcchHHhHHH
Q 020982 185 CSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDP-RGGLRDKLRKPRDYYHTCYC 263 (319)
Q Consensus 185 ~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~-~GGf~~rp~k~~D~~~T~w~ 263 (319)
..++|.+++++|||.|+|.+ .|||+++|+++||++|||++
T Consensus 313 ---------------------------------------~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~g 353 (390)
T 3dra_B 313 ---------------------------------------IKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLA 353 (390)
T ss_dssp ---------------------------------------GGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHH
T ss_pred ---------------------------------------ccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHH
Confidence 13679999999999988886 89999999999999999999
Q ss_pred HHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHHh
Q 020982 264 LSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHE 314 (319)
Q Consensus 264 la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~~ 314 (319)
+++|+++++.. ..+..+||.|+||...+++++.
T Consensus 354 LagLsl~~~~~------------------~~l~~vdp~~~ip~~~~~~~~~ 386 (390)
T 3dra_B 354 LASLSLWNHEK------------------FALQEINPILTITKESYQFFKE 386 (390)
T ss_dssp HHHHHHHHHHH------------------HTCCCEETTTTEEHHHHHHHHH
T ss_pred HHHHHHcCCcc------------------CCCceeCchhcCCHHHHHHHHH
Confidence 99999998521 0267789999999999998875
No 3
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=9e-57 Score=439.56 Aligned_cols=269 Identities=52% Similarity=0.906 Sum_probs=235.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 81 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~ 81 (319)
+|+..||+||.+|.++|.++.++.++++++++||+++|++||||++.+++++|+++||+|+++|.++|..+...++++++
T Consensus 148 ~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~ 227 (437)
T 2h6f_B 148 PHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAE 227 (437)
T ss_dssp BCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHH
T ss_pred cchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHH
Confidence 78999999999999999642235678999999999999999999998888999999999999999999877777889999
Q ss_pred HHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC-CCccccCCCCCCCchhhhhHHHHH
Q 020982 82 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGV 160 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~-~dGGF~gr~~~~~D~~yt~~~~as 160 (319)
||.+||++||||+..|+.|+|+.+|||||++|.++|+.+.++++++++||++||. ++|||+|||+|.+|+|||||++++
T Consensus 228 ~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~ 307 (437)
T 2h6f_B 228 WIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGL 307 (437)
T ss_dssp HHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTH
T ss_pred HHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999888899999999999999 899999999999999999999999
Q ss_pred HHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhcc
Q 020982 161 FALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCS 240 (319)
Q Consensus 161 L~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~ 240 (319)
|+||+.+........ +. ...+++|.+++++|||.|+
T Consensus 308 L~lL~~~~~~~~~~~-------------------------~~-------------------~~~~l~d~~~l~~yIL~~~ 343 (437)
T 2h6f_B 308 LPLLHRALHAQGDPA-------------------------LS-------------------MSHWMFHQQALQEYILMCC 343 (437)
T ss_dssp HHHHHHHHHHTTCTT-------------------------CC-------------------SSCCSSCHHHHHHHHHHHS
T ss_pred HHHHhhhhhcccccc-------------------------cc-------------------cccccCCHHHHHHHHHHHc
Confidence 999998742211000 00 0024789999999999888
Q ss_pred CCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHHhhhcc
Q 020982 241 QDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 318 (319)
Q Consensus 241 Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~~~~~~ 318 (319)
|.+.|||+++|++.||++||||++++|+++++..... ...+.+.+.+.+.+.++||+|||+.++++++++||++
T Consensus 344 Q~~~GGf~d~Pg~~~D~yHT~y~L~gLsl~~~~~~~~----~~~~~~~~~~~~~l~~i~p~~~i~~~~~~~~~~~~~~ 417 (437)
T 2h6f_B 344 QCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGA----MLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQ 417 (437)
T ss_dssp BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETT----EEEECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHT
T ss_pred cCCCCCccCCCCCCCCHHHHHHHHHHHHHhccccccc----cccccccCCcccCccccCCcccCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999754211 1123356666778999999999999999999999975
No 4
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=5.5e-56 Score=426.66 Aligned_cols=233 Identities=30% Similarity=0.585 Sum_probs=215.7
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeec-cCCCCchhHHHHHHHHHHHhcCCCHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH-DAGEIDVRACYTAISVASILNILDDELLQNVG 80 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~-~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~ 80 (319)
||+.+||+||++|.+||.+ ++.++|+++++||+++|++||+|.+. .+++.|+++||||++++.+||..+.+++++++
T Consensus 120 ~~v~~T~~Al~~L~~lg~~--~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~ 197 (377)
T 1n4q_B 120 GHIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI 197 (377)
T ss_dssp CCHHHHHHHHHHHHHTTCC--STTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 8999999999999999975 67899999999999999999999986 67899999999999999999987778899999
Q ss_pred HHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcc----cHHHHHHHHHhcCCCCccccCCCCCCCchhhhhH
Q 020982 81 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFW 156 (319)
Q Consensus 81 ~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~----d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~ 156 (319)
+||++||++|||||..|+.|||+.+||||+++|.+++..+.. +++++++||.+|| +|||+|||||.+|+|||||
T Consensus 198 ~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfW 275 (377)
T 1n4q_B 198 SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFW 275 (377)
T ss_dssp HHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHH
T ss_pred HHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHH
Confidence 999999999999999999999999999999999999987654 7899999999999 8999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHH
Q 020982 157 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYL 236 (319)
Q Consensus 157 ~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~i 236 (319)
++++|++|++. .++|.+++++||
T Consensus 276 v~~~l~iL~~~---------------------------------------------------------~~~d~~~l~~fi 298 (377)
T 1n4q_B 276 VGATLKLLKIF---------------------------------------------------------QYTNFEKNRNYI 298 (377)
T ss_dssp HHHHHHHTTCG---------------------------------------------------------GGSCHHHHHHHH
T ss_pred HHHHHHHhCCc---------------------------------------------------------cccCHHHHHHHH
Confidence 99999999864 257899999999
Q ss_pred HhccCCC-CCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHHhh
Q 020982 237 LLCSQDP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEF 315 (319)
Q Consensus 237 l~~~Q~~-~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~~~ 315 (319)
++ +|.+ .|||+++|++.||++|||+++++|+++++.. +.++||.||||...+++++++
T Consensus 299 l~-cQ~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~~~--------------------l~~i~p~~~i~~~~~~~~~~~ 357 (377)
T 1n4q_B 299 LS-TQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESG--------------------ICKVHPALNVSTRTSERLRDL 357 (377)
T ss_dssp HT-TBCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTCTT--------------------CCCEETTTTEEHHHHHHHHHH
T ss_pred HH-HcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCCCC--------------------CCCCCCcccCCHHHHHHHHHH
Confidence 98 4887 8999999999999999999999999997642 678899999999998888876
Q ss_pred h
Q 020982 316 F 316 (319)
Q Consensus 316 ~ 316 (319)
+
T Consensus 358 ~ 358 (377)
T 1n4q_B 358 H 358 (377)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=2.5e-54 Score=409.53 Aligned_cols=231 Identities=31% Similarity=0.586 Sum_probs=215.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 81 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~ 81 (319)
||+..||+||.+|.+++. ++.++++++++||.++|++||||.+.+++++|+++||||+++|.++|..+.++++++++
T Consensus 93 ~~l~~Ty~Al~~L~~l~~---~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~ 169 (331)
T 3dss_B 93 PHLLYTLSAVQILTLYDS---IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIE 169 (331)
T ss_dssp BCHHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 799999999999999974 66889999999999999999999998888999999999999999999877788999999
Q ss_pred HHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHH
Q 020982 82 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 161 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL 161 (319)
||++||++||||++.|+.|+|+.+||||+++|.++|..+.++++++++||.++|.+||||+||++|++|+|||||++++|
T Consensus 170 ~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L 249 (331)
T 3dss_B 170 FVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASL 249 (331)
T ss_dssp HHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccC
Q 020982 162 ALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 241 (319)
Q Consensus 162 ~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q 241 (319)
++|++.+ .+|.+++++||++| |
T Consensus 250 ~llg~~~---------------------------------------------------------~~~~~~~~~fil~c-Q 271 (331)
T 3dss_B 250 KIIGRLH---------------------------------------------------------WIDREKLRSFILAC-Q 271 (331)
T ss_dssp HHTTCGG---------------------------------------------------------GSCHHHHHHHHHHT-B
T ss_pred HHcCCcc---------------------------------------------------------hhhHHHHHHHHHHh-c
Confidence 9998642 35889999999986 6
Q ss_pred CC-CCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCccccCCCCCCCcccccccccCHHHHHHHH
Q 020982 242 DP-RGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAH 313 (319)
Q Consensus 242 ~~-~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~~~~~~~~~~~h~~~~i~~~~~~~~~ 313 (319)
+. .|||+++|++.||++||||++++|++++... +.++||.|+||...++++.
T Consensus 272 ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~~--------------------l~~~~p~~~~~~~~~~~~~ 324 (331)
T 3dss_B 272 DEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQ--------------------IKPVSPVFCMPEEVLQRVN 324 (331)
T ss_dssp CTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTT--------------------SCCBCTTTSSBHHHHHHHT
T ss_pred CCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCC--------------------CCCCCccccCCHHHHHHhC
Confidence 55 5999999999999999999999999998542 6778999999999999864
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=5.4e-54 Score=407.20 Aligned_cols=245 Identities=20% Similarity=0.345 Sum_probs=223.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 81 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~ 81 (319)
+.++.+||++.+|.+||. ++.++|+++++||++||++||||++.+++++|+..||+|+.+|.+++..+.++++++++
T Consensus 45 ~r~~~~yw~l~~L~lLg~---l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~ 121 (331)
T 3dss_B 45 LRMSGVYWGLTVMDLMGQ---LHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVA 121 (331)
T ss_dssp GHHHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCC---CchhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 358899999999999996 56789999999999999999999999988999999999999999999777788999999
Q ss_pred HHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHH
Q 020982 82 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 161 (319)
Q Consensus 82 ~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL 161 (319)
||.++|++||||++.+++|+|+++||||+++|.++|..+.++++++++||++||++||||+++|++++|++||||++++|
T Consensus 122 fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL 201 (331)
T 3dss_B 122 YVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFL 201 (331)
T ss_dssp HHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHH
T ss_pred HHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccC
Q 020982 162 ALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 241 (319)
Q Consensus 162 ~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q 241 (319)
.+++.++ .++.+++.+|+++ +|
T Consensus 202 ~llg~~~---------------------------------------------------------~~~~~~~~~wL~~-~Q 223 (331)
T 3dss_B 202 AITSQLH---------------------------------------------------------QVNSDLLGWWLCE-RQ 223 (331)
T ss_dssp HHTTCGG---------------------------------------------------------GSCHHHHHHHHHT-TB
T ss_pred Hhccccc---------------------------------------------------------hhhHHHHHHHHHH-hC
Confidence 9998653 2467889999775 69
Q ss_pred CCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCcccc-----------CCCCCCCcccccccccCHHHH
Q 020982 242 DPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVL-----------GPYSNVLEPVHPVFNIVLDRY 309 (319)
Q Consensus 242 ~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~h~~~~i~~~~~ 309 (319)
.++|||+|||+|++|+|||||++++|+++++..++|. .++.+||+ ++|++.+|.+||+|+|+.+++
T Consensus 224 ~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~--~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~ 300 (331)
T 3dss_B 224 LPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDR--EKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSL 300 (331)
T ss_dssp CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCH--HHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhH--HHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998776653 34555543 469999999999999998876
No 7
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=3e-53 Score=417.00 Aligned_cols=256 Identities=19% Similarity=0.170 Sum_probs=221.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeecc--CCCCchhHHHHHHHHHHHhcCC------CH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD--AGEIDVRACYTAISVASILNIL------DD 73 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~--~~~~d~~~ty~al~~L~lLg~~------~~ 73 (319)
++++.+||++.+|.+||.. ++..+++++++||++||+++|||++.+ ++.+++..||+||.+|.+++.. +.
T Consensus 87 sr~wl~Yw~l~aL~LLg~~--ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~ 164 (520)
T 3q7a_B 87 SRPWLVFWTVHSLDLLGVA--LDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKD 164 (520)
T ss_dssp GHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHH
T ss_pred chHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhh
Confidence 3578999999999999954 667789999999999999999999988 8899999999999999999864 34
Q ss_pred HH--HHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccC--------
Q 020982 74 EL--LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG-------- 143 (319)
Q Consensus 74 ~~--~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~g-------- 143 (319)
++ ++++++||.++|++||||.+.+++|.|+++||||+++|.+||..+..+++++++||++||++||||+.
T Consensus 165 Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~ 244 (520)
T 3q7a_B 165 LAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSV 244 (520)
T ss_dssp HHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC--
T ss_pred hhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCcccccccc
Confidence 67 89999999999999999999899999999999999999999998788899999999999999999999
Q ss_pred ---------------CCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccc
Q 020982 144 ---------------RTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEI 208 (319)
Q Consensus 144 ---------------r~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~ 208 (319)
.|+.|+|++||||++|+|+||+++.....
T Consensus 245 ~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~------------------------------------ 288 (520)
T 3q7a_B 245 VPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSF------------------------------------ 288 (520)
T ss_dssp ----------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTC------------------------------------
T ss_pred ccccccccccccccCCCCCccchhHHHHHHHHHHHhcccccccc------------------------------------
Confidence 67999999999999999999998631100
Q ss_pred cccCCcccccccccCCcccCHHHHHHHHHhccCC---CCCccCCCCCCCcchHHhHHHHHHHHhcCcC------------
Q 020982 209 SSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD---PRGGLRDKLRKPRDYYHTCYCLSGLSICQHS------------ 273 (319)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~---~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~------------ 273 (319)
...+|.+++.+|+. .||. +.|||+|||||++|+|||||++++|.||++.
T Consensus 289 ---------------~~~~d~~~l~~WL~-~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~ 352 (520)
T 3q7a_B 289 ---------------PLSIDANAALRWTV-LQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKS 352 (520)
T ss_dssp ---------------SCCCCHHHHHHHHH-HTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---
T ss_pred ---------------ccccCHHHHHHHHH-HhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccccccc
Confidence 02468899999965 5786 4699999999999999999999999999864
Q ss_pred -----------CCCC-------CCCCCCCcccc--------------CCCCCCCcccccccccCHHHHHH
Q 020982 274 -----------WLKD-------EDSSPLPRAVL--------------GPYSNVLEPVHPVFNIVLDRYHE 311 (319)
Q Consensus 274 -----------~~~~-------~~~~~~~~~i~--------------~~~~~~~~~~h~~~~i~~~~~~~ 311 (319)
.|.| .|+.+|++||+ |+|++.+|.+||+|+|+++++-.
T Consensus 353 ~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~q 422 (520)
T 3q7a_B 353 RIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQ 422 (520)
T ss_dssp ------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhC
Confidence 1111 13345666653 46899999999999999998753
No 8
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=2.4e-53 Score=408.21 Aligned_cols=248 Identities=17% Similarity=0.160 Sum_probs=214.3
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCC----CCCeeecc-----C---CCCchhHHHHHHHHHHHhc
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDP----SGAFRMHD-----A---GEIDVRACYTAISVASILN 69 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~----dGgF~~~~-----~---~~~d~~~ty~al~~L~lLg 69 (319)
++++.+||+|.+|.+||.++ +...+|+++++||++||.+ .|||++.+ + +.+|+.+||+||.+|.+||
T Consensus 30 ~R~~l~Yw~l~~L~lLg~~~-~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg 108 (390)
T 3dra_B 30 NKLAIIYFCLHGLQLIQKFQ-FTNQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILK 108 (390)
T ss_dssp CHHHHHHHHHHHHHHTTCCC-CCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhCCCc-cchHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhC
Confidence 46899999999999999753 3566799999999999765 38999874 3 4699999999999999999
Q ss_pred CC--CHHHHHHHHHHHHhccC---C-CCcccCCC-----------CCCCchhHHHHHHHHHHHhcCCC------------
Q 020982 70 IL--DDELLQNVGNYILSCQT---Y-EGGIAGEP-----------GSEAHGGYTFCGLAAMILINEAD------------ 120 (319)
Q Consensus 70 ~~--~~~~~~~~~~~i~s~Q~---~-DGGF~~~p-----------g~es~~~~Ty~Al~~L~llg~~~------------ 120 (319)
.. +.++++++++||.+||+ + ||||+..+ ++|.|+|+||||++++.+|+...
T Consensus 109 ~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~ 188 (390)
T 3dra_B 109 SPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNE 188 (390)
T ss_dssp CCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------
T ss_pred chhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCccccccccccccc
Confidence 74 56889999999999998 7 89999654 68999999999999999999886
Q ss_pred -cccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCcc
Q 020982 121 -RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVS 199 (319)
Q Consensus 121 -~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~ 199 (319)
.+|++++++||.+||++||||++.|+.|+|.+|||||+|+|+||+++.
T Consensus 189 ~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~~------------------------------- 237 (390)
T 3dra_B 189 TDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPL------------------------------- 237 (390)
T ss_dssp CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCCG-------------------------------
T ss_pred ccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCccc-------------------------------
Confidence 689999999999999999999999999999999999999999998651
Q ss_pred CCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCC----------------------------CCCccCCCC
Q 020982 200 EGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD----------------------------PRGGLRDKL 251 (319)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~----------------------------~~GGf~~rp 251 (319)
.|.+++.+|+. .||. ++|||+|||
T Consensus 238 ---------------------------~d~~~l~~WL~-~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~ 289 (390)
T 3dra_B 238 ---------------------------EKLKSTKEWLI-HRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRE 289 (390)
T ss_dssp ---------------------------GGCHHHHHHHH-TTBCCCCTTTCC------------CCTTCCGGGTTSBBSST
T ss_pred ---------------------------ccHHHHHHHHH-HcCccccccccccccccccccccccccccccccCCCccCCC
Confidence 25577888855 5786 479999999
Q ss_pred CCCcchHHhHHHHHHHHhcCc--CCCCCCCCCCCCcccc------------CCCCCCCcccccccccCHHHHHH
Q 020982 252 RKPRDYYHTCYCLSGLSICQH--SWLKDEDSSPLPRAVL------------GPYSNVLEPVHPVFNIVLDRYHE 311 (319)
Q Consensus 252 ~k~~D~~~T~w~la~Lsll~~--~~~~~~~~~~~~~~i~------------~~~~~~~~~~h~~~~i~~~~~~~ 311 (319)
||++|+|||||++++|.||+. ..++| +.++++||+ ++|++.+|++||+|+|+.+++-.
T Consensus 290 nKl~D~CYS~Wv~~sL~iL~~~~~~l~d--~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~ 361 (390)
T 3dra_B 290 NKLSDTCYSWWCTGSLYNIDVNFIKLVD--LNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWN 361 (390)
T ss_dssp TCCBCTHHHHHHHHHHHHHCGGGGGGSC--HHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHHHHHhccccccccC--HHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcC
Confidence 999999999999999999995 44555 345666653 56899999999999999998753
No 9
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=8.3e-51 Score=397.43 Aligned_cols=246 Identities=18% Similarity=0.248 Sum_probs=218.4
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCC---CHHHHHHH
Q 020982 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL---DDELLQNV 79 (319)
Q Consensus 3 ~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~---~~~~~~~~ 79 (319)
+...+||++.+|.+||.. ++..+++++++||+++|++||||++.+++++++..||+||.+|.++|.. +.++++++
T Consensus 100 r~~l~y~~l~aL~lLg~~--~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~ka 177 (437)
T 2h6f_B 100 RPWLCYWILHSLELLDEP--IPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKL 177 (437)
T ss_dssp HHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHH
T ss_pred CccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHH
Confidence 456789999999999964 5566789999999999999999999888899999999999999999964 44678999
Q ss_pred HHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHH
Q 020982 80 GNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGG 159 (319)
Q Consensus 80 ~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~a 159 (319)
++||++||++||||++.+++|+|+++||||+++|.++|..+..+++++++||++||++||||+++|++++|++|||||++
T Consensus 178 v~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~ 257 (437)
T 2h6f_B 178 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLA 257 (437)
T ss_dssp HHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999877677899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhc
Q 020982 160 VFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLC 239 (319)
Q Consensus 160 sL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~ 239 (319)
+|.++++.+ .++.+++++||+.
T Consensus 258 aL~~lg~~~---------------------------------------------------------~~~~~rl~~wL~~- 279 (437)
T 2h6f_B 258 ALVILKRER---------------------------------------------------------SLNLKSLLQWVTS- 279 (437)
T ss_dssp HHHHHTCGG---------------------------------------------------------GSCHHHHHHHHHH-
T ss_pred HHHHcCCCC---------------------------------------------------------cccHHHHHHHHHh-
Confidence 999998753 2367889999875
Q ss_pred cCC-CCCccCCCCCCCcchHHhHHHHHHHHhcCcC-------------CCCCCCCCCCCcccc-----------CCCCCC
Q 020982 240 SQD-PRGGLRDKLRKPRDYYHTCYCLSGLSICQHS-------------WLKDEDSSPLPRAVL-----------GPYSNV 294 (319)
Q Consensus 240 ~Q~-~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~-------------~~~~~~~~~~~~~i~-----------~~~~~~ 294 (319)
+|. ++|||+|||||.+|+|||||++++|+++++. +++| +.++++||+ ++|++.
T Consensus 280 rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d--~~~l~~yIL~~~Q~~~GGf~d~Pg~~ 357 (437)
T 2h6f_B 280 RQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFH--QQALQEYILMCCQCPAGGLLDKPGKS 357 (437)
T ss_dssp TBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSC--HHHHHHHHHHHSBCTTSCBCSSTTSC
T ss_pred cCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCC--HHHHHHHHHHHccCCCCCccCCCCCC
Confidence 677 7899999999999999999999999999863 1233 346677764 568999
Q ss_pred CcccccccccCHHHHH
Q 020982 295 LEPVHPVFNIVLDRYH 310 (319)
Q Consensus 295 ~~~~h~~~~i~~~~~~ 310 (319)
+|.+||+|+|+.+++-
T Consensus 358 ~D~yHT~y~L~gLsl~ 373 (437)
T 2h6f_B 358 RDFYHTCYCLSGLSIA 373 (437)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999874
No 10
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=1.4e-50 Score=389.12 Aligned_cols=247 Identities=15% Similarity=0.199 Sum_probs=216.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCC---------CCCCeeeccCC-----------------CCch
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD---------PSGAFRMHDAG-----------------EIDV 55 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~---------~dGgF~~~~~~-----------------~~d~ 55 (319)
+.++.+||+|.+|.+||. ++.++++++++||+++|+ ++|||++.+.. .+++
T Consensus 46 ~r~~~~yw~l~~L~lLg~---l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v 122 (377)
T 1n4q_B 46 SRLTIAFFALSGLDMLDS---LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHI 122 (377)
T ss_dssp GHHHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCH
T ss_pred chHHHHHHHHHHHHHhCC---CCccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCH
Confidence 367899999999999996 335679999999999999 68999986532 3899
Q ss_pred hHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhccCCCCcccCC-CCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Q 020982 56 RACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGE-PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVF 133 (319)
Q Consensus 56 ~~ty~al~~L~lLg~-~~~~~~~~~~~~i~s~Q~~DGGF~~~-pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~ 133 (319)
..||+||.+|.+||. .+.++++++++||.++|++||||.+. .++|.|+++||||++++.++|..+.++++++++||++
T Consensus 123 ~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~s 202 (377)
T 1n4q_B 123 AMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRR 202 (377)
T ss_dssp HHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 999999999999984 45678999999999999999999987 6889999999999999999998778899999999999
Q ss_pred cCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCccccccCC
Q 020982 134 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGD 213 (319)
Q Consensus 134 ~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~ 213 (319)
||++||||+..|..|+|..+||||+++|.+|+.++...
T Consensus 203 cQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~------------------------------------------ 240 (377)
T 1n4q_B 203 SMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVF------------------------------------------ 240 (377)
T ss_dssp TBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHS------------------------------------------
T ss_pred hcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCccccc------------------------------------------
Confidence 99999999999999999999999999999998764210
Q ss_pred cccccccccCCcccCHHHHHHHHHhccCCCCCccCCCCCCCcchHHhHHHHHHHHhcCcCCCCCCCCCCCCcccc-----
Q 020982 214 EHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVL----- 288 (319)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp~k~~D~~~T~w~la~Lsll~~~~~~~~~~~~~~~~i~----- 288 (319)
...+.+++++|+. .+| +|||+|||||++|+|||||++++|.+++...++|. +++++||+
T Consensus 241 -----------~~~~~~rli~wL~-~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~--~~l~~fil~cQ~~ 304 (377)
T 1n4q_B 241 -----------SEKELNRIKRWCI-MRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNF--EKNRNYILSTQDR 304 (377)
T ss_dssp -----------CHHHHHHHHHHHH-TTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCH--HHHHHHHHTTBCT
T ss_pred -----------chhhHHHHHHHHH-hcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCH--HHHHHHHHHHcCC
Confidence 0025688999966 578 79999999999999999999999999999887773 46666653
Q ss_pred ------CCCCCCCcccccccccCHHHH
Q 020982 289 ------GPYSNVLEPVHPVFNIVLDRY 309 (319)
Q Consensus 289 ------~~~~~~~~~~h~~~~i~~~~~ 309 (319)
++|++.+|++||+|+|+.+++
T Consensus 305 ~~GGf~~~p~~~~D~~HT~~~LagLsl 331 (377)
T 1n4q_B 305 LVGGFAKWPDSHPDALHAYFGICGLSL 331 (377)
T ss_dssp TTCSBCSSTTSCCBHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCCCCHHHHHHHHHHHHh
Confidence 568899999999999999886
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.75 E-value=1.1e-16 Score=163.53 Aligned_cols=212 Identities=17% Similarity=0.111 Sum_probs=159.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCC-------------CCeeec--cCCCCchhHHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPS-------------GAFRMH--DAGEIDVRACYTAISVAS 66 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~d-------------GgF~~~--~~~~~d~~~ty~al~~L~ 66 (319)
+.++.|.+++.+|..+|..+ +....++.++||.++|..+ |||... ..+.+++..|..++.+|.
T Consensus 309 s~vwdta~~l~AL~~~G~~~--~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~ 386 (631)
T 2sqc_A 309 SPVWDTGLAVLALRAAGLPA--DHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALN 386 (631)
T ss_dssp CHHHHHHHHHHHHHHTTCCT--TCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHH
Confidence 35778999999999999742 2345789999999998642 344332 234578999999999999
Q ss_pred HhcCCC----HHHHHHHHHHHHhccCCCCcccCCCC-------------------CCCchhHHHHHHHHHHHhcCCC-cc
Q 020982 67 ILNILD----DELLQNVGNYILSCQTYEGGIAGEPG-------------------SEAHGGYTFCGLAAMILINEAD-RL 122 (319)
Q Consensus 67 lLg~~~----~~~~~~~~~~i~s~Q~~DGGF~~~pg-------------------~es~~~~Ty~Al~~L~llg~~~-~~ 122 (319)
.++... ....+++++||.++|++||||+..+. ..+++..|..++.+|..++... ..
T Consensus 387 ~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~ 466 (631)
T 2sqc_A 387 TLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWK 466 (631)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSH
T ss_pred HcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHH
Confidence 888643 23567899999999999999975321 1267788999999999988532 23
Q ss_pred cHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCC
Q 020982 123 DLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGD 202 (319)
Q Consensus 123 d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~ 202 (319)
.++++++||.++|++||||.++. +.+|+|+...++..|...... .
T Consensus 467 ~i~rai~~L~~~Q~~DGsw~g~w----g~~~~y~Ta~~l~aL~~~g~~-~------------------------------ 511 (631)
T 2sqc_A 467 VIRRAVEYLKREQKPDGSWFGRW----GVNYLYGTGAVVSALKAVGID-T------------------------------ 511 (631)
T ss_dssp HHHHHHHHHHHHCCTTSCCCCSS----BSSHHHHHHHHHHHHHHTTCC-T------------------------------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCC----CCCchHHHHHHHHHHHHhCCc-c------------------------------
Confidence 57899999999999999997654 467888888777777653210 0
Q ss_pred CCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCC----------CCCcchHHhHHHHHHHHhcCc
Q 020982 203 GSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL----------RKPRDYYHTCYCLSGLSICQH 272 (319)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp----------~k~~D~~~T~w~la~Lsll~~ 272 (319)
.-...++..+|+++ +|.++|||...+ ...+|+.+|+|++.+|..++.
T Consensus 512 ----------------------~~~~i~rav~~L~s-~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~ 568 (631)
T 2sqc_A 512 ----------------------REPYIQKALDWVEQ-HQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR 568 (631)
T ss_dssp ----------------------TSHHHHHHHHHHHH-TCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred ----------------------cHHHHHHHHHHHHH-hCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 00134678899886 599999996543 346899999999999999876
Q ss_pred C
Q 020982 273 S 273 (319)
Q Consensus 273 ~ 273 (319)
.
T Consensus 569 ~ 569 (631)
T 2sqc_A 569 A 569 (631)
T ss_dssp S
T ss_pred C
Confidence 5
No 12
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.74 E-value=5e-17 Score=165.90 Aligned_cols=210 Identities=15% Similarity=0.124 Sum_probs=153.2
Q ss_pred CcHHHHHHHHHHHHHhCCCC-CCCcccHHHHHHHHHhcCCCCCCeeeccC-------------------CCCchhHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEK-SLPSINRSKVYTFLKCMKDPSGAFRMHDA-------------------GEIDVRACYTA 61 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~-~~~~~dr~~~~~~i~~~q~~dGgF~~~~~-------------------~~~d~~~ty~a 61 (319)
|++..|.+++.+|..++..+ .......++.++||.++|++||||+.... ..+++..|..+
T Consensus 373 p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~v 452 (631)
T 2sqc_A 373 PDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHV 452 (631)
T ss_dssp CBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHH
Confidence 56899999999999998631 01112367899999999999999964311 12678889999
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCC-cccHHHHHHHHHhcCCCCc
Q 020982 62 ISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIGWVVFRQGVEG 139 (319)
Q Consensus 62 l~~L~lLg~~-~~~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~-~~d~~~l~~~l~~~Q~~dG 139 (319)
+.+|..++.. ....++++++||.++|++||||.+..+ ..+...|..++.+|..+|... ...++++++||+++|++||
T Consensus 453 l~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DG 531 (631)
T 2sqc_A 453 LECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDG 531 (631)
T ss_dssp HHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCC
Confidence 9999888753 235678999999999999999965443 234555666777777777532 3467999999999999999
Q ss_pred cccCCC----------CCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCCCCcccCcCCCccCCCCCCcccc
Q 020982 140 GFQGRT----------NKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEIS 209 (319)
Q Consensus 140 GF~gr~----------~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~ 209 (319)
||+..+ ..++|+..|+|++.+|...+...
T Consensus 532 gWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~----------------------------------------- 570 (631)
T 2sqc_A 532 GWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAE----------------------------------------- 570 (631)
T ss_dssp CCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSS-----------------------------------------
T ss_pred CcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCC-----------------------------------------
Confidence 996532 35789999999999998765421
Q ss_pred ccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCCCC---Ccch-------HHhHHHHHHHHhc
Q 020982 210 SQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRK---PRDY-------YHTCYCLSGLSIC 270 (319)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp~k---~~D~-------~~T~w~la~Lsll 270 (319)
....++..+|+++ +|.++|||...... .+.. |-+.|.+-+|+..
T Consensus 571 ----------------~~~i~rav~wL~~-~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~~y 624 (631)
T 2sqc_A 571 ----------------SEAARRGVQYLVE-TQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRY 624 (631)
T ss_dssp ----------------SHHHHHHHHHHHH-HCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHh-ccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHHHH
Confidence 0123678899775 69999999987754 2333 4456667666643
No 13
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.68 E-value=8.1e-16 Score=159.21 Aligned_cols=218 Identities=19% Similarity=0.228 Sum_probs=157.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCC-CCcccHHHHHHHHHhcCCCC--------------CCeeecc--CCCCchhHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKS-LPSINRSKVYTFLKCMKDPS--------------GAFRMHD--AGEIDVRACYTAISV 64 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~-~~~~dr~~~~~~i~~~q~~d--------------GgF~~~~--~~~~d~~~ty~al~~ 64 (319)
+.+..|-+++.+|.-.|..+. -.....++.++||.++|..+ |||+... .+.+++..|-.++.+
T Consensus 384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~a 463 (732)
T 1w6k_A 384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKA 463 (732)
T ss_dssp CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHH
Confidence 457889999999988875310 00113578999999998755 8887653 245799999999999
Q ss_pred HHHhcC--------CCHHHHHHHHHHHHhccCCCCcccCCCC---------------------CCCchhHHHHHHHHHHH
Q 020982 65 ASILNI--------LDDELLQNVGNYILSCQTYEGGIAGEPG---------------------SEAHGGYTFCGLAAMIL 115 (319)
Q Consensus 65 L~lLg~--------~~~~~~~~~~~~i~s~Q~~DGGF~~~pg---------------------~es~~~~Ty~Al~~L~l 115 (319)
|..++. ......++.++||.++|++||||+.... ..+++..|.+++.+|..
T Consensus 464 L~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~ 543 (732)
T 1w6k_A 464 VLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKY 543 (732)
T ss_dssp HHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHH
Confidence 988742 2345678999999999999999963211 12466788899999998
Q ss_pred hcCC---C-----cccHHHHHHHHHhcCCCCccccCCCCCCCchhhhhHHHHHHHHHhhhhhccCCCCCccccCCcccCC
Q 020982 116 INEA---D-----RLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSI 187 (319)
Q Consensus 116 lg~~---~-----~~d~~~l~~~l~~~Q~~dGGF~gr~~~~~D~~yt~~~~asL~lL~~~~~~~~~~~~~~~~~~~~~~~ 187 (319)
++.. . ...++++++||.++|++||||.++. +..++..|++++.+|.+++..... .
T Consensus 544 ~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~aG~~~~~--~-------------- 606 (732)
T 1w6k_A 544 FHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSW-GVCFTYGTWFGLEAFACMGQTYRD--G-------------- 606 (732)
T ss_dssp HHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSS-BSSHHHHHHHHHHHHHHTTCCCBT--T--------------
T ss_pred hccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcC-CCccchHHHHHHHHHHHhCCcccc--c--------------
Confidence 8742 1 1247899999999999999998753 345555677888887776542100 0
Q ss_pred CCcccCcCCCccCCCCCCccccccCCcccccccccCCcccCHHHHHHHHHhccCCCCCccCCCC----------CCCcch
Q 020982 188 DNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL----------RKPRDY 257 (319)
Q Consensus 188 p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~il~~~Q~~~GGf~~rp----------~k~~D~ 257 (319)
......++..+|+++ +|.++||+...+ ++.+|+
T Consensus 607 ------------------------------------~~~~~i~rav~~Lls-~Q~~DGGWge~~~s~~~~~y~~~~~s~v 649 (732)
T 1w6k_A 607 ------------------------------------TACAEVSRACDFLLS-RQMADGGWGEDFESCEERRYVQSAQSQI 649 (732)
T ss_dssp ------------------------------------BCCHHHHHHHHHHHT-TCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred ------------------------------------chhHHHHHHHHHHHH-hcccCCCCCCCCccccccccCCCCCCCH
Confidence 000134677899875 699999998743 567899
Q ss_pred HHhHHHHHHHHhcCcC
Q 020982 258 YHTCYCLSGLSICQHS 273 (319)
Q Consensus 258 ~~T~w~la~Lsll~~~ 273 (319)
..|.|++.+|..++..
T Consensus 650 ~~TAwALlALl~ag~~ 665 (732)
T 1w6k_A 650 HNTCWAMMGLMAVRHP 665 (732)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999877653
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.67 E-value=1.1e-15 Score=158.36 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=122.9
Q ss_pred CcHHHHHHHHHHHHHhCCCC-----CCCcccHHHHHHHHHhcCCCCCCeeeccC---------------------CCCch
Q 020982 2 PHLATTYAAVNALISLGGEK-----SLPSINRSKVYTFLKCMKDPSGAFRMHDA---------------------GEIDV 55 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~-----~~~~~dr~~~~~~i~~~q~~dGgF~~~~~---------------------~~~d~ 55 (319)
|++-.|-+++.+|..++... .......++.++||.++|++||||..... ..+.+
T Consensus 452 pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v 531 (732)
T 1w6k_A 452 IVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYV 531 (732)
T ss_dssp BCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBH
T ss_pred CccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcc
Confidence 67788999999998875311 12222357889999999999999963211 11356
Q ss_pred hHHHHHHHHHHHhcCC---C-----HHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCc-----c
Q 020982 56 RACYTAISVASILNIL---D-----DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR-----L 122 (319)
Q Consensus 56 ~~ty~al~~L~lLg~~---~-----~~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~-----~ 122 (319)
..|.+++.+|..++.. . ...+++.++||.++|++||||.+..+ ..+...|++|+.+|..+|.... .
T Consensus 532 ~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~~~ 610 (732)
T 1w6k_A 532 ECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACA 610 (732)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCH
T ss_pred hHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccchhH
Confidence 6787888888887631 1 24578899999999999999987544 3566679999999999997532 3
Q ss_pred cHHHHHHHHHhcCCCCccccCCC----------CCCCchhhhhHHHHHHHHHh
Q 020982 123 DLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLR 165 (319)
Q Consensus 123 d~~~l~~~l~~~Q~~dGGF~gr~----------~~~~D~~yt~~~~asL~lL~ 165 (319)
.++++++||+++|++||||+... .+.+++..|.|++-+|...+
T Consensus 611 ~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag 663 (732)
T 1w6k_A 611 EVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVR 663 (732)
T ss_dssp HHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence 57899999999999999998642 45689999999998876554
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.37 E-value=9.5e-12 Score=114.21 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCcccHHHHHHH-------HHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CC
Q 020982 3 HLATTYAAVNALISLGGEKSLPSINRSKVYTF-------LKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LD 72 (319)
Q Consensus 3 ~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~-------i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~ 72 (319)
.+....+++.-|...+.-+++....+++++++ ++++|++||||+.+.+..++.+.|-+++.+|..++. .+
T Consensus 8 ~~~P~~~~~~yL~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~ 87 (277)
T 1qqf_A 8 GMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAID 87 (277)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHCGGGHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHHHHHHHHcCCcccCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCC
Confidence 34455555555555553100112235666666 888999999999888778899999999999988863 34
Q ss_pred HHHHHHHHHHHHh-ccCCCCcccCCCCC-------------CCchhHHHHHHHHHHHhcCC-----C--cccHHHHHHHH
Q 020982 73 DELLQNVGNYILS-CQTYEGGIAGEPGS-------------EAHGGYTFCGLAAMILINEA-----D--RLDLDALIGWV 131 (319)
Q Consensus 73 ~~~~~~~~~~i~s-~Q~~DGGF~~~pg~-------------es~~~~Ty~Al~~L~llg~~-----~--~~d~~~l~~~l 131 (319)
+...++.++||.+ .|++||+|.+.-+. +++...|..++.+|...+.. + ...++++++||
T Consensus 88 ~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 167 (277)
T 1qqf_A 88 SQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYL 167 (277)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHH
Confidence 4556789999996 99999999764321 34466677788877766421 1 23467899999
Q ss_pred HhcCCC
Q 020982 132 VFRQGV 137 (319)
Q Consensus 132 ~~~Q~~ 137 (319)
.++|+.
T Consensus 168 ~~~~~~ 173 (277)
T 1qqf_A 168 EASYLN 173 (277)
T ss_dssp HHHHTT
T ss_pred HHHhcc
Confidence 998763
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.29 E-value=4.6e-11 Score=111.51 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcccHHHHHHH-------HHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CCH
Q 020982 4 LATTYAAVNALISLGGEKSLPSINRSKVYTF-------LKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDD 73 (319)
Q Consensus 4 l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~-------i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~~ 73 (319)
+....++..-|...+.-+++....+++++++ ++++|++||||+.+.+..++.+.|-+++.+|..++. .+.
T Consensus 25 ~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~ 104 (310)
T 2wy7_A 25 MTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDS 104 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCH
T ss_pred HhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344444445555542100011124555555 889999999999887778899999999999988863 344
Q ss_pred HHHHHHHHHHHh-ccCCCCcccCCCCC-------------CCchhHHHHHHHHHHHhcCC-----C--cccHHHHHHHHH
Q 020982 74 ELLQNVGNYILS-CQTYEGGIAGEPGS-------------EAHGGYTFCGLAAMILINEA-----D--RLDLDALIGWVV 132 (319)
Q Consensus 74 ~~~~~~~~~i~s-~Q~~DGGF~~~pg~-------------es~~~~Ty~Al~~L~llg~~-----~--~~d~~~l~~~l~ 132 (319)
...++.++||.+ .|++||+|.+.-+. +++...|..++.+|...+.. + ...++++++||.
T Consensus 105 ~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~ 184 (310)
T 2wy7_A 105 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLE 184 (310)
T ss_dssp HHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHH
Confidence 556789999996 99999999764321 34466677778877766421 1 234678999999
Q ss_pred hcCCC
Q 020982 133 FRQGV 137 (319)
Q Consensus 133 ~~Q~~ 137 (319)
++|+.
T Consensus 185 ~~~~~ 189 (310)
T 2wy7_A 185 ANYMN 189 (310)
T ss_dssp HHGGG
T ss_pred HHhhc
Confidence 98763
No 17
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.98 E-value=1.2e-08 Score=93.33 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=98.5
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHh-cCCCCCCeeeccC--------C-----CCchhHHHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHDA--------G-----EIDVRACYTAISVASI 67 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~-~q~~dGgF~~~~~--------~-----~~d~~~ty~al~~L~l 67 (319)
++.+.|-+++.+|...+....++.--.++.++||.+ .|++||+|..... + ++++..|.+++.+|..
T Consensus 65 ~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~ 144 (277)
T 1qqf_A 65 PSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQE 144 (277)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHh
Confidence 578889999999998875321222224688999996 9999999975321 0 2346667777777755
Q ss_pred hc------CC-CHHHHHHHHHHHHhccCC---------------------------------CCcccCCCCCC-CchhHH
Q 020982 68 LN------IL-DDELLQNVGNYILSCQTY---------------------------------EGGIAGEPGSE-AHGGYT 106 (319)
Q Consensus 68 Lg------~~-~~~~~~~~~~~i~s~Q~~---------------------------------DGGF~~~pg~e-s~~~~T 106 (319)
.+ .. .....++.++||.++++. ||++-..++.. ..+..|
T Consensus 145 ~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~T 224 (277)
T 1qqf_A 145 ARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEAT 224 (277)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHH
T ss_pred hhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHH
Confidence 53 11 134567899999998764 45554444432 256678
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccC
Q 020982 107 FCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 143 (319)
Q Consensus 107 y~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~g 143 (319)
.+|+.+|...+.. .+++++++||.++|+++|||..
T Consensus 225 a~aLlal~~~~~~--~~~~~~v~wL~~qq~~~Ggw~s 259 (277)
T 1qqf_A 225 SYALLALLLLKDF--DSVPPVVRWLNDERYYGGGYGS 259 (277)
T ss_dssp HHHHHHHHHTTCT--TSHHHHHHHHHHCCCCTTSTTC
T ss_pred HHHHHHHHhcCCh--hhHHHHHHHHHHccCCCCCeec
Confidence 8888888777653 4689999999999999999984
No 18
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.90 E-value=3.5e-08 Score=91.86 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHh-cCCCCCCeeeccC--------C-----CCchhHHHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHDA--------G-----EIDVRACYTAISVASI 67 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~-~q~~dGgF~~~~~--------~-----~~d~~~ty~al~~L~l 67 (319)
++.+.|-+++.+|...+....++.--.++.++||.+ .|++||+|..... + ++++..|.+++.+|..
T Consensus 81 ~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~ 160 (310)
T 2wy7_A 81 PSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQE 160 (310)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHh
Confidence 577889999999998875311222224688999996 9999999975321 0 2346667777777755
Q ss_pred hcC------C-CHHHHHHHHHHHHhccCC---------------------------------CCcccCCCCCC-CchhHH
Q 020982 68 LNI------L-DDELLQNVGNYILSCQTY---------------------------------EGGIAGEPGSE-AHGGYT 106 (319)
Q Consensus 68 Lg~------~-~~~~~~~~~~~i~s~Q~~---------------------------------DGGF~~~pg~e-s~~~~T 106 (319)
.+. . .....++.++||.++|+. +|++...++.. ..+..|
T Consensus 161 ~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~T 240 (310)
T 2wy7_A 161 AKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEAT 240 (310)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHH
T ss_pred cccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHH
Confidence 531 1 134567889999998763 34454444421 256788
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccC
Q 020982 107 FCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 143 (319)
Q Consensus 107 y~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~g 143 (319)
.+|+.+|...+.. .+++++++||.++|+++|||..
T Consensus 241 a~aLlal~~~~~~--~~~~~~v~wL~~qq~~~Ggw~s 275 (310)
T 2wy7_A 241 SYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS 275 (310)
T ss_dssp HHHHHHHHHHTCT--TTHHHHHHHHHHTTCCCCSTTC
T ss_pred HHHHHHHHhcCCh--hhHHHHHHHHHHccCCCCCeec
Confidence 8888888877754 4689999999999999999974
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.81 E-value=5.2e-08 Score=92.97 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhccCCCCcccCCC--------
Q 020982 29 SKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEP-------- 97 (319)
Q Consensus 29 ~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~~~~~~~~~~~i~s~Q~~DGGF~~~p-------- 97 (319)
++-++||++.|++||||+.+.+...+.+.|-+++-.|..++. .+....++.++||.+.|++||+|.+.-
T Consensus 94 ~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~ 173 (367)
T 1hzf_A 94 QKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQ 173 (367)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccccccccccc
Confidence 455678999999999998876666788888888888877762 234567889999999999999997641
Q ss_pred ----CCCCchhHHHHHHHHHHHhcCC--C----------cccHHHHHHHHHhc
Q 020982 98 ----GSEAHGGYTFCGLAAMILINEA--D----------RLDLDALIGWVVFR 134 (319)
Q Consensus 98 ----g~es~~~~Ty~Al~~L~llg~~--~----------~~d~~~l~~~l~~~ 134 (319)
+.++++..|.+++.+|...+.. + ...++++++||.++
T Consensus 174 gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 174 GGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 1235577788888888766531 1 12367889999776
No 20
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.45 E-value=2.6e-06 Score=93.44 Aligned_cols=115 Identities=12% Similarity=0.114 Sum_probs=80.5
Q ss_pred cHHHHHHHH-------HhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhc---C-CCHHHHHHHHHHHHhccCCCCcccC
Q 020982 27 NRSKVYTFL-------KCMKDPSGAFRMHDAGEIDVRACYTAISVASILN---I-LDDELLQNVGNYILSCQTYEGGIAG 95 (319)
Q Consensus 27 dr~~~~~~i-------~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg---~-~~~~~~~~~~~~i~s~Q~~DGGF~~ 95 (319)
.+++++++| +++|++||||+.++++.++.+.|-+++.+|..+. . .+....+++++||.+.|.+||.|.+
T Consensus 866 ~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~ 945 (1325)
T 2pn5_A 866 LIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDK 945 (1325)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccc
Confidence 355666654 8899999999999888899999999999998874 2 3445678899999999999999965
Q ss_pred CCC--------C-CCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHhcCCC-Cccc
Q 020982 96 EPG--------S-EAHGGYTFCGLAAMILINEA---DRLDLDALIGWVVFRQGV-EGGF 141 (319)
Q Consensus 96 ~pg--------~-es~~~~Ty~Al~~L~llg~~---~~~d~~~l~~~l~~~Q~~-dGGF 141 (319)
... + .....+|.+++.+|.-.|.. ....++++++||.++|.. +++|
T Consensus 946 ~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~ 1004 (1325)
T 2pn5_A 946 AGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAY 1004 (1325)
T ss_dssp CSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHH
T ss_pred cccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHH
Confidence 421 1 12344455555555433322 123467899999998763 3443
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.45 E-value=2.3e-06 Score=90.70 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=78.1
Q ss_pred HHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHh-ccCCCCcccCCCC--------
Q 020982 31 VYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQNVGNYILS-CQTYEGGIAGEPG-------- 98 (319)
Q Consensus 31 ~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~~~~~~~~~~~i~s-~Q~~DGGF~~~pg-------- 98 (319)
-++++++.|++||||+.+.+..++.+.|-+++..|..+.. .+....++.++||.+ .|.+||+|.....
T Consensus 304 g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~g 383 (915)
T 2hr0_B 304 GYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIG 383 (915)
T ss_dssp HHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCC
T ss_pred HHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcC
Confidence 3455778899999999988778889999888888777652 234567889999995 9999999965321
Q ss_pred C-----CCchhHHHHHHHHHHHhcCC-----C--cccHHHHHHHHHhcCC
Q 020982 99 S-----EAHGGYTFCGLAAMILINEA-----D--RLDLDALIGWVVFRQG 136 (319)
Q Consensus 99 ~-----es~~~~Ty~Al~~L~llg~~-----~--~~d~~~l~~~l~~~Q~ 136 (319)
+ +++...|.+++.+|...|.. . ...+.++++||.+++.
T Consensus 384 g~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~ 433 (915)
T 2hr0_B 384 GLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYM 433 (915)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGG
T ss_pred CccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhh
Confidence 1 34566777888888877653 1 1235688999988764
No 22
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.08 E-value=8.8e-06 Score=78.29 Aligned_cols=120 Identities=16% Similarity=-0.004 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhCCCCCCCcccHHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCC-----HHHHHH--
Q 020982 6 TTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD-----DELLQN-- 78 (319)
Q Consensus 6 ~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~-----~~~~~~-- 78 (319)
-.=+++.+|..-|.+ + ++..++.+...|+ +++|.. ++..++..+-.|+.+|..++... ....++
T Consensus 138 q~sL~vLALC~~g~~-----v-~~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al 208 (414)
T 2bb6_A 138 QYSLGILALCVHQKR-----V-HDSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLAL 208 (414)
T ss_dssp HHHHHHHHHHHTTCC-----C-CHHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-----c-cHHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Confidence 334566677777754 2 3445555555444 345642 23468889988888888886421 122333
Q ss_pred --HHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcc---cHHHHHHHHHhcCCCCcccc
Q 020982 79 --VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL---DLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 79 --~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~---d~~~l~~~l~~~Q~~dGGF~ 142 (319)
++++|.+.|++||+|| +..+|-.|+++|...+..... +..++++||++ |..||+|+
T Consensus 209 ~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 209 KRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence 4588889999999997 577899999999999875433 56778999999 99999997
No 23
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.06 E-value=1.1e-05 Score=76.89 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCccc---HHHHHHHHHhcCCCCccccCCCCC-----
Q 020982 76 LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD---LDALIGWVVFRQGVEGGFQGRTNK----- 147 (319)
Q Consensus 76 ~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d---~~~l~~~l~~~Q~~dGGF~gr~~~----- 147 (319)
.++.++|+.+.|++||||+..++..++..-|..++-.|..++....++ ++++++||.++|.+||+|.++...
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~ 172 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 172 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence 456888999999999999988877788888989999998887543332 578999999999999999875321
Q ss_pred -------CCchhhhhHHHHHHHH
Q 020982 148 -------LVDGCYSFWQGGVFAL 163 (319)
Q Consensus 148 -------~~D~~yt~~~~asL~l 163 (319)
+.+..-|.|++.+|..
T Consensus 173 ~gg~~~~~~~~~lTA~vl~aL~~ 195 (367)
T 1hzf_A 173 QGGLVGNDETVALTAFVTIALHH 195 (367)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccccchHHHHHHHHh
Confidence 1234455667766644
No 24
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.89 E-value=0.0001 Score=80.91 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=68.6
Q ss_pred CCchhHHHHHHHHHHHh---cCCCHHHHHHH-------HHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCc
Q 020982 52 EIDVRACYTAISVASIL---NILDDELLQNV-------GNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR 121 (319)
Q Consensus 52 ~~d~~~ty~al~~L~lL---g~~~~~~~~~~-------~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~ 121 (319)
|-.+...+-.+.++..| +.+++..++++ ++++.++|++||||+..++.+++...|.+++.+|..+.+...
T Consensus 840 EQ~~s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~ 919 (1325)
T 2pn5_A 840 EQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYIS 919 (1325)
T ss_dssp TGGGGGTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCS
T ss_pred hHHHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEE
Confidence 34444444444444444 44454444444 456689999999999999999999999999999999865432
Q ss_pred -cc---HHHHHHHHHhcCCCCccccCC
Q 020982 122 -LD---LDALIGWVVFRQGVEGGFQGR 144 (319)
Q Consensus 122 -~d---~~~l~~~l~~~Q~~dGGF~gr 144 (319)
+| ++++++||.++|.+||.|.++
T Consensus 920 ~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 920 DIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp CSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred cCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 44 578999999999999999765
No 25
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=97.64 E-value=0.00034 Score=77.44 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCCCCCeeeccC----CCCchhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhccCCCCcccCCC-----
Q 020982 30 KVYTFLKCMKDPSGAFRMHDA----GEIDVRACYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEP----- 97 (319)
Q Consensus 30 ~~~~~i~~~q~~dGgF~~~~~----~~~d~~~ty~al~~L~lLg~---~~~~~~~~~~~~i~s~Q~~DGGF~~~p----- 97 (319)
+-++++++.|++||||+.+.. +.++.+.|-+++-.|..... .+....++.++||.+.|.+||+|....
T Consensus 987 ~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~ 1066 (1451)
T 4acq_A 987 TGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNN 1066 (1451)
T ss_dssp HHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCG
T ss_pred HHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccch
Confidence 456788889999999998753 45789999888888887653 244567889999999999999997421
Q ss_pred ---C-CCCchhHHHHHHHHHHHhcCCC-cccHHHHHHHHHhc
Q 020982 98 ---G-SEAHGGYTFCGLAAMILINEAD-RLDLDALIGWVVFR 134 (319)
Q Consensus 98 ---g-~es~~~~Ty~Al~~L~llg~~~-~~d~~~l~~~l~~~ 134 (319)
| .+.++..|.+++.+|...|... ...++++++||.++
T Consensus 1067 ~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1067 AIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp GGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHH
T ss_pred hhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 2 2467778999999999888642 22367899999865
No 26
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.61 E-value=0.00046 Score=73.07 Aligned_cols=140 Identities=15% Similarity=0.183 Sum_probs=90.6
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHh-cCCCCCCeeecc--------CC-----CCchhHHHHHHHHHHH
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHD--------AG-----EIDVRACYTAISVASI 67 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i~~-~q~~dGgF~~~~--------~~-----~~d~~~ty~al~~L~l 67 (319)
++.+.|=+++..|.........+.--.++.++||.+ .|++||+|.... ++ ++++..|.+++.+|..
T Consensus 326 ~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~ 405 (915)
T 2hr0_B 326 PSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQE 405 (915)
T ss_dssp BCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHH
T ss_pred CcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHh
Confidence 456778888888877764211222225677899995 999999996431 11 2356666677777766
Q ss_pred hcCC-----C--HHHHHHHHHHHHhccCC---------------------------------CCcccCCCCC-CCchhHH
Q 020982 68 LNIL-----D--DELLQNVGNYILSCQTY---------------------------------EGGIAGEPGS-EAHGGYT 106 (319)
Q Consensus 68 Lg~~-----~--~~~~~~~~~~i~s~Q~~---------------------------------DGGF~~~pg~-es~~~~T 106 (319)
.|.. . ....++.++||.+.+.. +|.+-..++. ..++..|
T Consensus 406 ~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~T 485 (915)
T 2hr0_B 406 AKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEAT 485 (915)
T ss_dssp HTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHH
T ss_pred cccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHH
Confidence 6532 1 22455677888776432 2222111221 1266788
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccccC
Q 020982 107 FCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 143 (319)
Q Consensus 107 y~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~g 143 (319)
.+|+.+|...+..+ ...++++||.+.|+.+|||..
T Consensus 486 ayaLlall~~~~~~--~~~~~v~wL~~qq~~~Ggw~S 520 (915)
T 2hr0_B 486 SYALLALLQLKDFD--FVPPVVRWLNEQRYYGGGYGS 520 (915)
T ss_dssp HHHHHHHHHTTCTT--THHHHHHHHHTCCCSSSSCCS
T ss_pred HHHHHHHHhcCChh--hHHHHHHHHHhcccCCCCccc
Confidence 89998888887643 478899999999999999973
No 27
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.60 E-value=0.00069 Score=70.23 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=91.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH-------HhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---C
Q 020982 2 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFL-------KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---L 71 (319)
Q Consensus 2 ~~l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i-------~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~ 71 (319)
+.+..+.+++..|...+.-..+....+++..++| ++.|++||||+.+.+..++.+.|-+++-+|..+.. .
T Consensus 337 s~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~i 416 (767)
T 4fxk_B 337 IYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGG 416 (767)
T ss_dssp GGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSC
T ss_pred HhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCc
Confidence 4556666677777766643223333355555554 45789999999988778899999999988888753 3
Q ss_pred CHHHHHHHHHHHHhccCCCCcccCC------------CCCCCchhHHHHHHHHHHHhcCCCc------------ccHHHH
Q 020982 72 DDELLQNVGNYILSCQTYEGGIAGE------------PGSEAHGGYTFCGLAAMILINEADR------------LDLDAL 127 (319)
Q Consensus 72 ~~~~~~~~~~~i~s~Q~~DGGF~~~------------pg~es~~~~Ty~Al~~L~llg~~~~------------~d~~~l 127 (319)
++....+.+.|+.+.|.+||.|... .+.+.+...|.+.+.+|...+.... ..+.++
T Consensus 417 d~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka 496 (767)
T 4fxk_B 417 SPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKA 496 (767)
T ss_dssp CHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHH
Confidence 5566778899999999999999642 1123456677777777766543211 125677
Q ss_pred HHHHHhcC
Q 020982 128 IGWVVFRQ 135 (319)
Q Consensus 128 ~~~l~~~Q 135 (319)
+.||.+..
T Consensus 497 ~~~L~~~~ 504 (767)
T 4fxk_B 497 NSFLGEKA 504 (767)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887654
No 28
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=97.35 E-value=0.00059 Score=65.40 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCCCCeeec-----c---------------------------------CCCCchhHHHHHHHHHHHhc
Q 020982 28 RSKVYTFLKCMKDPSGAFRMH-----D---------------------------------AGEIDVRACYTAISVASILN 69 (319)
Q Consensus 28 r~~~~~~i~~~q~~dGgF~~~-----~---------------------------------~~~~d~~~ty~al~~L~lLg 69 (319)
-+++.+.|.+.|+++|||.-. . .+..|...|...+..|.-+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 567999999999999999521 0 01256667888877776653
Q ss_pred CC-----C---HHHHHHHHHHHHhccCCCCcccCC-CCC--------CCchhHHHHHHHHHHHhcCC-C-----------
Q 020982 70 IL-----D---DELLQNVGNYILSCQTYEGGIAGE-PGS--------EAHGGYTFCGLAAMILINEA-D----------- 120 (319)
Q Consensus 70 ~~-----~---~~~~~~~~~~i~s~Q~~DGGF~~~-pg~--------es~~~~Ty~Al~~L~llg~~-~----------- 120 (319)
.. + ..-.++.++||++.|.++|||+.. |.. ..| --|--++..|..++.. .
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~ 241 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT 241 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 22 1 133568999999999999999864 211 112 1233344444444431 0
Q ss_pred --cccHHHHHHHHHhcCCC-Ccccc
Q 020982 121 --RLDLDALIGWVVFRQGV-EGGFQ 142 (319)
Q Consensus 121 --~~d~~~l~~~l~~~Q~~-dGGF~ 142 (319)
..-++++++||++.|.+ ||.+-
T Consensus 242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~ 266 (408)
T 1r76_A 242 RALEATNAAIHCIVETQVVQDGKRL 266 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred hHHHHHHHHHHHHHHhhcccCCccc
Confidence 11257899999999998 99876
No 29
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.35 E-value=0.00053 Score=65.59 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CC---------HHHHHHHHHHHHhccCCCCcccC
Q 020982 28 RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LD---------DELLQNVGNYILSCQTYEGGIAG 95 (319)
Q Consensus 28 r~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~---------~~~~~~~~~~i~s~Q~~DGGF~~ 95 (319)
++..++-+...++.+|+ ..++..+-.|+.+|..+.. .. ..-.++++++|.+.|++||+||
T Consensus 132 ~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG- 203 (399)
T 2pmv_A 132 TLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG- 203 (399)
T ss_dssp HHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS-
T ss_pred CHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc-
Confidence 55566666666666631 2467777777777777754 11 1235678899999999999997
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCC-cc-cHHHHHHHHHhcCCCCcccc
Q 020982 96 EPGSEAHGGYTFCGLAAMILINEAD-RL-DLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 96 ~pg~es~~~~Ty~Al~~L~llg~~~-~~-d~~~l~~~l~~~Q~~dGGF~ 142 (319)
+..+|--|+++|...+..+ .. +..++++||++ |..||+|+
T Consensus 204 ------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 204 ------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp ------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred ------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC
Confidence 7999999999999998732 22 67889999998 89999997
No 30
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=97.17 E-value=0.002 Score=71.43 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=76.9
Q ss_pred CCchhHHHHHHHHHHHh---cCCCHHHH-------HHHHHHHHhccCCCCcccCCCC----CCCchhHHHHHHHHHHHhc
Q 020982 52 EIDVRACYTAISVASIL---NILDDELL-------QNVGNYILSCQTYEGGIAGEPG----SEAHGGYTFCGLAAMILIN 117 (319)
Q Consensus 52 ~~d~~~ty~al~~L~lL---g~~~~~~~-------~~~~~~i~s~Q~~DGGF~~~pg----~es~~~~Ty~Al~~L~llg 117 (319)
|-.+...+--+.++..| +.+++..+ ++.++|+.+.|++||||+..++ .+++...|.+++..|..+.
T Consensus 951 EQ~ms~~~P~l~~~~yL~~t~q~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~ 1030 (1451)
T 4acq_A 951 EXNMVLFAPNIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQAR 1030 (1451)
T ss_dssp TTTHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhh
Confidence 44555555445555555 44444332 4567889999999999998764 5688999999999999887
Q ss_pred CCCcc---cHHHHHHHHHhcCCCCccccC--CC-C-----C-CCchhhhhHHHHHHHHH
Q 020982 118 EADRL---DLDALIGWVVFRQGVEGGFQG--RT-N-----K-LVDGCYSFWQGGVFALL 164 (319)
Q Consensus 118 ~~~~~---d~~~l~~~l~~~Q~~dGGF~g--r~-~-----~-~~D~~yt~~~~asL~lL 164 (319)
....+ -+.++++||.++|.+||+|.. +. + + +.+..-|.+++.+|...
T Consensus 1031 ~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~ 1089 (1451)
T 4acq_A 1031 AYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEI 1089 (1451)
T ss_dssp TTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHT
T ss_pred hhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHc
Confidence 53222 368899999999999999973 22 1 1 23444566666666543
No 31
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.16 E-value=0.0032 Score=70.62 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHH-------HhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CCH
Q 020982 4 LATTYAAVNALISLGGEKSLPSINRSKVYTFL-------KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDD 73 (319)
Q Consensus 4 l~~ty~al~~L~lLg~~~~~~~~dr~~~~~~i-------~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~~ 73 (319)
+....++...|...+.-+.+....+++.+++| ++.|++||+|+.+.+.+.+.+.|-+++-.|..+.. .+.
T Consensus 1017 ~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~ 1096 (1661)
T 2b39_A 1017 MTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDS 1096 (1661)
T ss_dssp THHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCH
T ss_pred cccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCH
Confidence 33444444445444421111122355555554 45789999999988778899999999998887753 345
Q ss_pred HHHHHHHHHHHh-ccCCCCcccCCC--------C-----CCCchhHHHHHHHHHHHhcCC-----Cc--ccHHHHHHHHH
Q 020982 74 ELLQNVGNYILS-CQTYEGGIAGEP--------G-----SEAHGGYTFCGLAAMILINEA-----DR--LDLDALIGWVV 132 (319)
Q Consensus 74 ~~~~~~~~~i~s-~Q~~DGGF~~~p--------g-----~es~~~~Ty~Al~~L~llg~~-----~~--~d~~~l~~~l~ 132 (319)
...++.++||.+ .|.+||.|.... | .+++...|.+++.+|...+.. .. ..+.++++||.
T Consensus 1097 ~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~ 1176 (1661)
T 2b39_A 1097 KDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLE 1176 (1661)
T ss_dssp HHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHH
Confidence 567889999995 999999996421 1 223677777888888776542 11 13567889997
Q ss_pred hcC
Q 020982 133 FRQ 135 (319)
Q Consensus 133 ~~Q 135 (319)
++.
T Consensus 1177 ~~~ 1179 (1661)
T 2b39_A 1177 NHY 1179 (1661)
T ss_dssp HHT
T ss_pred Hhh
Confidence 653
No 32
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.12 E-value=0.00027 Score=65.95 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=76.9
Q ss_pred HHHHHHhcCCCCCCeeec-------------cCCCCchhHHHHHHHHHHHhcCC--C---HHHHHHHHHHHHhccCCCCc
Q 020982 31 VYTFLKCMKDPSGAFRMH-------------DAGEIDVRACYTAISVASILNIL--D---DELLQNVGNYILSCQTYEGG 92 (319)
Q Consensus 31 ~~~~i~~~q~~dGgF~~~-------------~~~~~d~~~ty~al~~L~lLg~~--~---~~~~~~~~~~i~s~Q~~DGG 92 (319)
+.+-|...|+++|||.-. .....|...|...+..|.-+... + ....++.++||++.|.++||
T Consensus 36 ~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGG 115 (332)
T 1gxm_A 36 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA 115 (332)
T ss_dssp GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCC
Confidence 478888999999999631 11246888888888887655321 1 23457899999999999999
Q ss_pred ccCC-CCC--------CCchhHHHHHHHHHHHhcC----C------------CcccHHHHHHHHHhcCCCCccccCC
Q 020982 93 IAGE-PGS--------EAHGGYTFCGLAAMILINE----A------------DRLDLDALIGWVVFRQGVEGGFQGR 144 (319)
Q Consensus 93 F~~~-pg~--------es~~~~Ty~Al~~L~llg~----~------------~~~d~~~l~~~l~~~Q~~dGGF~gr 144 (319)
|+.. |.. -.| --|--+|..|..++. . ...-++|+++||++.|.++||.-++
T Consensus 116 WpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~ 191 (332)
T 1gxm_A 116 LPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTV 191 (332)
T ss_dssp CBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECC
T ss_pred ccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCe
Confidence 9875 221 112 234555555655542 1 0112578999999999999998754
No 33
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=96.92 E-value=0.0013 Score=63.14 Aligned_cols=112 Identities=13% Similarity=-0.060 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCCCCCCCccc---HHHHH----HHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCCCH---HH
Q 020982 6 TTYAAVNALISLGGEKSLPSIN---RSKVY----TFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDD---EL 75 (319)
Q Consensus 6 ~ty~al~~L~lLg~~~~~~~~d---r~~~~----~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~---~~ 75 (319)
.|=-|+.+|..++..+ ..+-+ .++.+ ++|.+.|++||+|+ ++..|=.|+.+|...+.... .+
T Consensus 180 T~AMA~lAL~C~~~~~-~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~ 251 (414)
T 2bb6_A 180 TMAMAGMAFSCLELSN-LNPKQRNRINLALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTA 251 (414)
T ss_dssp HHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccch
Confidence 3445677888877531 11111 23333 78888899999996 56678889998888886543 37
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCccc
Q 020982 76 LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGF 141 (319)
Q Consensus 76 ~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF 141 (319)
..+.+++|.+ |.+||+|. +...|.-++-+|. |+ ...|+.. .+|+.+++-+
T Consensus 252 ~~~a~~~Ll~-q~~dG~F~-------np~ataQ~lpaL~--gk-ty~dv~~-----~~C~~~~~~~ 301 (414)
T 2bb6_A 252 CLKAKAALQA-SLQHKTFQ-------NPLMISQLLPVLN--QK-SYVDLIS-----PDCQAPRALL 301 (414)
T ss_dssp HHHHHHHHHH-HHTTTCCC-------SHHHHHHHHHHTT--TC-CGGGGGS-----CCSSSCCEEC
T ss_pred HHHHHHHHHH-hccCCCCC-------ChHHHHHHHHHhc--CC-Ccccccc-----CCCCCCcccc
Confidence 7889999999 99999996 4455655554433 43 2333321 4566554444
No 34
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=96.66 E-value=0.0069 Score=58.01 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhCCC-C--CCCc--ccHHHHHHHHHhcCCCCCCeeeccCCC---------CchhHHHHHHHHHHHhcC-
Q 020982 6 TTYAAVNALISLGGE-K--SLPS--INRSKVYTFLKCMKDPSGAFRMHDAGE---------IDVRACYTAISVASILNI- 70 (319)
Q Consensus 6 ~ty~al~~L~lLg~~-~--~~~~--~dr~~~~~~i~~~q~~dGgF~~~~~~~---------~d~~~ty~al~~L~lLg~- 70 (319)
.|..++.+|.-+... . .-+. --.++-++||+..|.++|||.-..-.. .| ..|=-++-.|..++.
T Consensus 150 dTa~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~ 228 (408)
T 1r76_A 150 ATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAG 228 (408)
T ss_dssp TTHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhc
Confidence 466667777654321 0 0001 113578999999999999996432100 11 112222222333332
Q ss_pred -C-----C-------HHHHHHHHHHHHhccCC-CCcccC---C--CCC---------CCchhHHHHHHHH-HHHhcCCCc
Q 020982 71 -L-----D-------DELLQNVGNYILSCQTY-EGGIAG---E--PGS---------EAHGGYTFCGLAA-MILINEADR 121 (319)
Q Consensus 71 -~-----~-------~~~~~~~~~~i~s~Q~~-DGGF~~---~--pg~---------es~~~~Ty~Al~~-L~llg~~~~ 121 (319)
. + ..-.++.++||+..|.+ ||..-. . .+. |.-...+.-++.+ +.+++....
T Consensus 229 ~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~ 308 (408)
T 1r76_A 229 RDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAP 308 (408)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSC
T ss_pred cCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCC
Confidence 1 1 13457899999999999 997652 0 110 1111112222222 233443321
Q ss_pred c-----cHHHHHHHHHhcCCCCcccc
Q 020982 122 L-----DLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 122 ~-----d~~~l~~~l~~~Q~~dGGF~ 142 (319)
- -++++++||.+.|++||++.
T Consensus 309 ~~~~~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 309 SDAVKQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCC----
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCcee
Confidence 1 26899999999999999997
No 35
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=96.65 E-value=0.0068 Score=62.73 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=54.3
Q ss_pred HHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCccc---HHHHHHHHHhcCCCCcccc
Q 020982 78 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD---LDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 78 ~~~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d---~~~l~~~l~~~Q~~dGGF~ 142 (319)
+.+.-+.+.|++||||+..++.+++..-|-+++-+|..+.....+| +.+++.||.+.|..||.|.
T Consensus 372 ~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~ 439 (767)
T 4fxk_B 372 KGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQ 439 (767)
T ss_dssp HHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBC
T ss_pred HHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccch
Confidence 3445566789999999999998999999999999999887654444 5678899999999999996
No 36
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=96.61 E-value=0.00032 Score=78.29 Aligned_cols=107 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHH-------hcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHh-ccCCCCcccC
Q 020982 28 RSKVYTFLK-------CMKDPSGAFRMHDAGEIDVRACYTAISVASILNI----LDDELLQNVGNYILS-CQTYEGGIAG 95 (319)
Q Consensus 28 r~~~~~~i~-------~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~----~~~~~~~~~~~~i~s-~Q~~DGGF~~ 95 (319)
+++..++|. +.|++||||+.+.+.+++.|.|-+++-++..... .++....+.++||.+ +|.+||.|..
T Consensus 1025 ~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e 1104 (1642)
T 3prx_B 1025 RTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKE 1104 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccc
Confidence 455666654 4678999999886667888999888888776543 334456789999998 9999999954
Q ss_pred C------------CCCCCchhHHHHHHHHHHHhcCCC-------cccHHHHHHHHHhc
Q 020982 96 E------------PGSEAHGGYTFCGLAAMILINEAD-------RLDLDALIGWVVFR 134 (319)
Q Consensus 96 ~------------pg~es~~~~Ty~Al~~L~llg~~~-------~~d~~~l~~~l~~~ 134 (319)
. .+.+.++..|.+.+.+|...+... ...+.+++.||.+.
T Consensus 1105 ~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1105 NAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp ----------------------------------------------------------
T ss_pred cccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 2 122456777777777776554320 11357888898764
No 37
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=96.42 E-value=0.013 Score=65.72 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=76.1
Q ss_pred HHHHHHHH-------HhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHh-ccCCCCcccCC
Q 020982 28 RSKVYTFL-------KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI---LDDELLQNVGNYILS-CQTYEGGIAGE 96 (319)
Q Consensus 28 r~~~~~~i-------~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~---~~~~~~~~~~~~i~s-~Q~~DGGF~~~ 96 (319)
+++.+++| ++.|++||+|+.+.+.+.+.+.|-+++-.|..+.. .+....++.++||.+ .|.+||.|...
T Consensus 1042 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1042 KQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp HHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence 55666664 35789999999987777899999999998877652 345567889999999 99999999642
Q ss_pred C--------CC------CCchhHHHHHHHHHHHhcCC---C--cccHHHHHHHHHhc
Q 020982 97 P--------GS------EAHGGYTFCGLAAMILINEA---D--RLDLDALIGWVVFR 134 (319)
Q Consensus 97 p--------g~------es~~~~Ty~Al~~L~llg~~---~--~~d~~~l~~~l~~~ 134 (319)
. |+ +++...|.+++.+|...+.. . ...+.++++||.++
T Consensus 1122 ~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1676)
T 3cu7_A 1122 SQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLEN 1178 (1676)
T ss_dssp SSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHh
Confidence 1 11 12555677777777665542 0 11356788898765
No 38
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=96.18 E-value=0.03 Score=62.81 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=52.3
Q ss_pred HHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCccc---HHHHHHHHHh-cCCCCccccC
Q 020982 80 GNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD---LDALIGWVVF-RQGVEGGFQG 143 (319)
Q Consensus 80 ~~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d---~~~l~~~l~~-~Q~~dGGF~g 143 (319)
+.-+++.|++||||+..++.+++..-|-+++-.|..+.....+| +.++++||.+ +|..+|.|..
T Consensus 1052 ~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1119 (1661)
T 2b39_A 1052 YTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQE 1119 (1661)
T ss_dssp HHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred HHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCcccc
Confidence 34455689999999999888899999999999999887543343 5788999995 9999999963
No 39
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=95.23 E-value=0.099 Score=58.72 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=50.9
Q ss_pred HHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCccc---HHHHHHHHHh-cCCCCccccC
Q 020982 83 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD---LDALIGWVVF-RQGVEGGFQG 143 (319)
Q Consensus 83 i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~~d---~~~l~~~l~~-~Q~~dGGF~g 143 (319)
+++.|++||||+..++.+++..-|-+++-.|..+.....+| +.++++||.+ +|..||.|..
T Consensus 1056 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1056 IMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp GGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred HhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence 45689999999999888899999999999998887543333 5788999999 9999999963
No 40
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=94.96 E-value=0.044 Score=51.04 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhCCCCCCCc--ccHHHHHHHHHhcCCCCCCeeec-cC-CC-------CchhHHHHHHHHHHHhcC----
Q 020982 6 TTYAAVNALISLGGEKSLPS--INRSKVYTFLKCMKDPSGAFRMH-DA-GE-------IDVRACYTAISVASILNI---- 70 (319)
Q Consensus 6 ~ty~al~~L~lLg~~~~~~~--~dr~~~~~~i~~~q~~dGgF~~~-~~-~~-------~d~~~ty~al~~L~lLg~---- 70 (319)
.|..++.+|.-+.....-+. --.++-++||++.|.++|||.-. +. .. .| ..|=-+|-.|..++.
T Consensus 75 dTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~ 153 (332)
T 1gxm_A 75 ATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAP 153 (332)
T ss_dssp TTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCC
Confidence 46667777755432100001 11457899999999999999743 11 00 12 122233344444431
Q ss_pred C------------CHHHHHHHHHHHHhccCCCCcccCC------CC---------CCCchhHHHHHHHHHH-HhcCCCcc
Q 020982 71 L------------DDELLQNVGNYILSCQTYEGGIAGE------PG---------SEAHGGYTFCGLAAMI-LINEADRL 122 (319)
Q Consensus 71 ~------------~~~~~~~~~~~i~s~Q~~DGGF~~~------pg---------~es~~~~Ty~Al~~L~-llg~~~~~ 122 (319)
. .....++.++||++.|.+|||.-++ ++ .|.-...+.-++.++. +++.....
T Consensus 154 ~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~ 233 (332)
T 1gxm_A 154 FDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTA 233 (332)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCH
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCCCH
Confidence 1 0123568999999999999976432 11 1211222333333333 34433211
Q ss_pred ----cHHHHHHHHHhcCCC
Q 020982 123 ----DLDALIGWVVFRQGV 137 (319)
Q Consensus 123 ----d~~~l~~~l~~~Q~~ 137 (319)
-++++++||.+.|++
T Consensus 234 ~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 234 EIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp HHHHHHHHHHHHHTCTTTS
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 268999999999984
No 41
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=94.87 E-value=0.045 Score=52.31 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCCCCeeeccCCCCchhHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHhccCCCCcccCCCCCCCchhH
Q 020982 28 RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DD-ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGY 105 (319)
Q Consensus 28 r~~~~~~i~~~q~~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~-~~-~~~~~~~~~i~s~Q~~DGGF~~~pg~es~~~~ 105 (319)
.++++++|.+.|++||+|+ |+..|=-|+.+|...+.. .. .+..+..+||.+ |..||+|+ +...
T Consensus 185 i~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~ 249 (399)
T 2pmv_A 185 LKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMS 249 (399)
T ss_dssp HHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHH
T ss_pred HHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHH
Confidence 3466777888899999995 678898999999888863 22 278899999999 99999996 4445
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCcccc
Q 020982 106 TFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 106 Ty~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dGGF~ 142 (319)
|.-++-+ |.++ ...|+.. .+|+..++-+.
T Consensus 250 taQilPa--L~~k-tyldv~~-----~~C~~~~~~~~ 278 (399)
T 2pmv_A 250 IAQILPS--LKGK-TYLDVPQ-----VTCSPDHEVQP 278 (399)
T ss_dssp HHHHHHH--HTTC-CGGGGGG-----CCBSCC-----
T ss_pred HHHHHHH--hcCC-CccCcCc-----CCCCCCccccc
Confidence 5444433 3333 3444332 45666544443
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=94.33 E-value=0.0075 Score=67.45 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhcCCCc-cc---HHHHHHHHHh-cCCCCccccC
Q 020982 81 NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR-LD---LDALIGWVVF-RQGVEGGFQG 143 (319)
Q Consensus 81 ~~i~s~Q~~DGGF~~~pg~es~~~~Ty~Al~~L~llg~~~~-~d---~~~l~~~l~~-~Q~~dGGF~g 143 (319)
.-+++.|++||||+...+.+++...|.+++-+|....+.-. +| +.++++||.+ +|.+||.|..
T Consensus 1037 qr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e 1104 (1642)
T 3prx_B 1037 AQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKE 1104 (1642)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccc
Confidence 33445789999999887778889999999999888765433 33 5789999997 8999999953
No 43
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=80.81 E-value=1.9 Score=44.96 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCC---CCCCeeeccCCCCchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCCCcccCCCCCCC--ch
Q 020982 29 SKVYTFLKCMKD---PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEA--HG 103 (319)
Q Consensus 29 ~~~~~~i~~~q~---~dGgF~~~~~~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s~Q~~DGGF~~~pg~es--~~ 103 (319)
+++++-|++..+ .||..+.. .+.+.-|-|...+=. ++.........+++||..-|.+|||+|...+... -+
T Consensus 57 ~~Lie~VK~~l~~~~~~g~~g~~---S~S~YDTAWVAmvp~-~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l 132 (817)
T 3sdr_A 57 EVLVSEIKAMLNPAITGDGESMI---TPSAYDTAWVARVPA-IDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRL 132 (817)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCCC---CCCHHHHHHHHTCBC-TTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHH
T ss_pred HHHHHHHHHHhccccCCCCCccc---ccCHHHhhHHheeec-CCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHHH
Confidence 445666665544 45522211 234556666322111 2222223456799999999999999986433222 35
Q ss_pred hHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Q 020982 104 GYTFCGLAAMILINEADRLDLDALIGWVVFR 134 (319)
Q Consensus 104 ~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~ 134 (319)
..|..||.+|.--+.. .--+++.+.||.+.
T Consensus 133 l~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 133 LATLSCVLVLLKWNVG-DLQVEQGIEFIKSN 162 (817)
T ss_dssp HHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-HHHHHHHHHHHHHH
Confidence 5788888777765432 23467888898764
No 44
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=71.68 E-value=5 Score=41.42 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCCC--chhHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Q 020982 75 LLQNVGNYILSCQTYEGGIAGEPGSEA--HGGYTFCGLAAMILINEADRLDLDALIGWVVFR 134 (319)
Q Consensus 75 ~~~~~~~~i~s~Q~~DGGF~~~pg~es--~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~ 134 (319)
...++++||..-|.+|||+|...+... -+..|..||.+|.--+.. +--+++.+.||.+.
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG-HSQVQQGAEFIAEN 114 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHH
Confidence 356799999999999999986433222 255788888777664432 23467888888654
No 45
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=71.46 E-value=5 Score=41.56 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCC-CCc-hhHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Q 020982 75 LLQNVGNYILSCQTYEGGIAGEPGS-EAH-GGYTFCGLAAMILINEADRLDLDALIGWVVFR 134 (319)
Q Consensus 75 ~~~~~~~~i~s~Q~~DGGF~~~pg~-es~-~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~ 134 (319)
...++++||.+-|.+||++|..... .-| +..|..||.+|.--+.. ..-+++.+.||.+.
T Consensus 75 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 75 HFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG-ETQVQKGIEFFRTQ 135 (785)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC-HHHHHHHHHHHHHH
Confidence 3467999999999999999865332 234 67888888888765432 23467888888764
No 46
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=69.05 E-value=6.6 Score=40.29 Aligned_cols=58 Identities=12% Similarity=-0.060 Sum_probs=40.5
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCC--chhHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Q 020982 76 LQNVGNYILSCQTYEGGIAGEPGSEA--HGGYTFCGLAAMILINEADRLDLDALIGWVVFR 134 (319)
Q Consensus 76 ~~~~~~~i~s~Q~~DGGF~~~pg~es--~~~~Ty~Al~~L~llg~~~~~d~~~l~~~l~~~ 134 (319)
..++++||..-|.+|||+|...+... -+..|..||.+|.-=+.. +--+++.+.||.+.
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-~~~i~rGl~fl~~n 111 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF-PHQCNKGITFFREN 111 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHH
Confidence 56799999999999999986322222 256788888777663322 22467888888764
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=68.91 E-value=6.5 Score=40.71 Aligned_cols=58 Identities=9% Similarity=0.030 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCCCCCeeeccC-CCCc-hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 020982 28 RSKVYTFLKCMKDPSGAFRMHDA-GEID-VRACYTAISVASILNILDDELLQNVGNYILSC 86 (319)
Q Consensus 28 r~~~~~~i~~~q~~dGgF~~~~~-~~~d-~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s~ 86 (319)
-.+.++||.+-|.+||+|+.... ...| +-.|-.||.+|.--+. .+...++.+.||.+-
T Consensus 76 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 76 FPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRT-GETQVQKGIEFFRTQ 135 (785)
T ss_dssp SHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHH
Confidence 37899999999999999986422 1223 7888888888876553 345677888888753
No 48
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=68.91 E-value=7.8 Score=39.74 Aligned_cols=56 Identities=4% Similarity=-0.073 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCCCeeeccCCC--CchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 020982 29 SKVYTFLKCMKDPSGAFRMHDAGE--IDVRACYTAISVASILNILDDELLQNVGNYILS 85 (319)
Q Consensus 29 ~~~~~~i~~~q~~dGgF~~~~~~~--~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s 85 (319)
.+.++||.+-|.+||+|+...... -.+-.|-.||.+|.--+. .+...++.+.||.+
T Consensus 53 p~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~ 110 (727)
T 3pya_A 53 PSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNL-FPHQCNKGITFFRE 110 (727)
T ss_dssp HHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 678999999999999998642111 146778888777766443 24567888899986
No 49
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=66.54 E-value=9.1 Score=39.49 Aligned_cols=59 Identities=7% Similarity=0.049 Sum_probs=42.2
Q ss_pred cHHHHHHHHHhcCCCCCCeeeccCC--CCchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 020982 27 NRSKVYTFLKCMKDPSGAFRMHDAG--EIDVRACYTAISVASILNILDDELLQNVGNYILSC 86 (319)
Q Consensus 27 dr~~~~~~i~~~q~~dGgF~~~~~~--~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s~ 86 (319)
.-.+.++||.+-|.+||+|+..... .-.+-.|-.||.+|.--+. .+...++.+.||.+-
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKT-GHSQVQQGAEFIAEN 114 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 4578899999999999999864211 1256778888777766553 245677888888753
No 50
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=65.54 E-value=9.8 Score=39.55 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=42.8
Q ss_pred cHHHHHHHHHhcCCCCCCeeeccCC--CCchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 020982 27 NRSKVYTFLKCMKDPSGAFRMHDAG--EIDVRACYTAISVASILNILDDELLQNVGNYILSC 86 (319)
Q Consensus 27 dr~~~~~~i~~~q~~dGgF~~~~~~--~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s~ 86 (319)
.-.+.++||.+-|.+||+|+..... .-.+-.|-.||.+|.--+. .+...++.+.||.+-
T Consensus 102 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 102 QFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKSN 162 (817)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 3478999999999999999864211 1256778888777766553 345677888999874
No 51
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=32.62 E-value=2e+02 Score=26.50 Aligned_cols=68 Identities=12% Similarity=-0.052 Sum_probs=41.8
Q ss_pred HHHHHHHHHhccCCCCcccCCCCC---CCchhHHHHHHHHH---HHhcCCCc---ccHHHHHHHHHhcCCCCccccC
Q 020982 76 LQNVGNYILSCQTYEGGIAGEPGS---EAHGGYTFCGLAAM---ILINEADR---LDLDALIGWVVFRQGVEGGFQG 143 (319)
Q Consensus 76 ~~~~~~~i~s~Q~~DGGF~~~pg~---es~~~~Ty~Al~~L---~llg~~~~---~d~~~l~~~l~~~Q~~dGGF~g 143 (319)
.+++++++.+.|.+||-+-..... ..+...|-..+.+| .-+|.++. .-.+++.+-|.++.++||-..+
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCS
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeC
Confidence 467899999999999988754432 23333333333332 22233321 1257889999998888886654
No 52
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=28.58 E-value=3.5e+02 Score=24.89 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCC----CCCCeeeccC--CCCchhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCC------CcccC
Q 020982 28 RSKVYTFLKCMKD----PSGAFRMHDA--GEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYE------GGIAG 95 (319)
Q Consensus 28 r~~~~~~i~~~q~----~dGgF~~~~~--~~~d~~~ty~al~~L~lLg~~~~~~~~~~~~~i~s~Q~~D------GGF~~ 95 (319)
.....+|+++... --+.|....+ .+-.....+.|++++..+...+....+.+++-+..-|..| |||+.
T Consensus 248 ~~~~~~fl~~~~~~~g~l~~~y~~~tg~~~~~~eS~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yyGG~~~ 327 (350)
T 3ren_A 248 EESSIKWIKEKFKKDGFLVATYNGKNGDATSQIESPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLYGGFGD 327 (350)
T ss_dssp CHHHHHHHHHHHHHHSSCCSEEETTTCCBCCCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTTTSCSB
T ss_pred cHHHHHHHHHHHhhcCCcceEEECCCCCcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccCCcccc
Confidence 3445888885211 1233332211 1234567788888887776557778889999999888766 88888
Q ss_pred CCCCCCchhHHHHHHHHH
Q 020982 96 EPGSEAHGGYTFCGLAAM 113 (319)
Q Consensus 96 ~pg~es~~~~Ty~Al~~L 113 (319)
......|..-=..||.+.
T Consensus 328 ~~~~~~~sfdNL~~LlA~ 345 (350)
T 3ren_A 328 EKTNSVYSFDNLNALLAF 345 (350)
T ss_dssp TTTTBCBHHHHHHHHHHH
T ss_pred cCCCceeeeccHHHHHHH
Confidence 766666665555555444
No 53
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.26 E-value=68 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCc
Q 020982 107 FCGLAAMILINEADRLDLDALIGWVVFRQGVEG 139 (319)
Q Consensus 107 y~Al~~L~llg~~~~~d~~~l~~~l~~~Q~~dG 139 (319)
-.|..+|..-+- |++++++||.+...+..
T Consensus 34 ~qA~kALKat~~----NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 34 ECVLRAMKKKGE----NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHCS----CHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHhCCCCCC
Confidence 566677776664 69999999999876643
No 54
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.83 E-value=2.5e+02 Score=26.69 Aligned_cols=68 Identities=15% Similarity=-0.120 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhccCCCCcccCCCC---CCCchhHHHHHHHHH---HHhcCCCc----ccHHHHHHHHHhcCCCCcccc
Q 020982 75 LLQNVGNYILSCQTYEGGIAGEPG---SEAHGGYTFCGLAAM---ILINEADR----LDLDALIGWVVFRQGVEGGFQ 142 (319)
Q Consensus 75 ~~~~~~~~i~s~Q~~DGGF~~~pg---~es~~~~Ty~Al~~L---~llg~~~~----~d~~~l~~~l~~~Q~~dGGF~ 142 (319)
..+++++.+.++|.+||-|-.... ...+...|-..+.+| .-+|.++. .-.+++.+.|.++.++||-..
T Consensus 295 ~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 295 YFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 356789999999999998765433 222333332222222 23344432 124678889988888888543
No 55
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=21.96 E-value=36 Score=19.47 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.8
Q ss_pred CCCccCCCCCCCcchH
Q 020982 243 PRGGLRDKLRKPRDYY 258 (319)
Q Consensus 243 ~~GGf~~rp~k~~D~~ 258 (319)
.+|||.-.|+|.-|-|
T Consensus 5 enggfcpdpekmgdwc 20 (32)
T 4b2v_A 5 ENGGFCPDPEKMGDWC 20 (32)
T ss_dssp CTTCBCCCTTTTCCCC
T ss_pred hcCCcCCChHHhcchh
Confidence 4699999999999865
Done!