Your job contains 1 sequence.
>020983
MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW
SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY
DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE
DTVEADDQFGELGAHMRGG
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020983
(319 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2047168 - symbol:NRPB3 species:3702 "Arabidops... 1360 5.6e-139 1
TAIR|locus:2047198 - symbol:NRPE3B species:3702 "Arabidop... 1267 4.0e-129 1
DICTYBASE|DDB_G0292244 - symbol:rpb3 "RNA polymerase II c... 700 4.9e-69 1
UNIPROTKB|E1BV97 - symbol:POLR2C "Uncharacterized protein... 492 6.9e-53 2
UNIPROTKB|I3LCH3 - symbol:POLR2C "Uncharacterized protein... 490 1.4e-52 2
UNIPROTKB|Q3T0Q3 - symbol:POLR2C "DNA-directed RNA polyme... 488 2.3e-52 2
UNIPROTKB|E2RQ42 - symbol:POLR2C "Uncharacterized protein... 488 2.3e-52 2
FB|FBgn0026373 - symbol:RpII33 "RNA polymerase II 33kD su... 475 4.8e-52 2
RGD|1306935 - symbol:Polr2c "polymerase (RNA) II (DNA dir... 484 6.1e-52 2
UNIPROTKB|P19387 - symbol:POLR2C "DNA-directed RNA polyme... 482 9.9e-52 2
MGI|MGI:109299 - symbol:Polr2c "polymerase (RNA) II (DNA ... 467 9.8e-50 2
SGD|S000001283 - symbol:RPB3 "RNA polymerase II third lar... 436 2.6e-47 2
ZFIN|ZDB-GENE-030131-6609 - symbol:polr2c "polymerase (RN... 487 1.8e-46 1
UNIPROTKB|D4A8A8 - symbol:Polr2c "Protein Polr2c" species... 484 3.8e-46 1
CGD|CAL0002919 - symbol:orf19.1248 species:5476 "Candida ... 442 1.1e-41 1
UNIPROTKB|Q5A462 - symbol:RPB3 "Putative uncharacterized ... 442 1.1e-41 1
POMBASE|SPCC1442.10c - symbol:rpb3 "RNA polymerase II sub... 401 2.5e-41 2
WB|WBGene00007971 - symbol:rpb-3 species:6239 "Caenorhabd... 432 1.2e-40 1
ASPGD|ASPL0000005413 - symbol:AN6252 species:162425 "Emer... 416 6.1e-39 1
POMBASE|SPBC1289.07c - symbol:rpc40 "DNA-directed RNA pol... 365 1.5e-33 1
CGD|CAL0005950 - symbol:RPC40 species:5476 "Candida albic... 361 4.1e-33 1
DICTYBASE|DDB_G0282339 - symbol:rpa5 "RNA polymerase III ... 353 2.9e-32 1
SGD|S000006314 - symbol:RPC40 "RNA polymerase subunit AC4... 348 9.8e-32 1
ZFIN|ZDB-GENE-040426-1495 - symbol:polr1c "polymerase (RN... 333 3.8e-30 1
FB|FBgn0031657 - symbol:CG3756 species:7227 "Drosophila m... 330 7.9e-30 1
UNIPROTKB|E2RH57 - symbol:POLR1C "Uncharacterized protein... 323 4.4e-29 1
MGI|MGI:103288 - symbol:Polr1c "polymerase (RNA) I polype... 323 4.4e-29 1
UNIPROTKB|Q32L22 - symbol:POLR1C "DNA-directed RNA polyme... 322 5.6e-29 1
TAIR|locus:2025855 - symbol:ATRPAC42 species:3702 "Arabid... 316 2.4e-28 1
UNIPROTKB|Q5RJK9 - symbol:Polr1c "Protein Polr1c" species... 315 3.1e-28 1
UNIPROTKB|O15160 - symbol:POLR1C "DNA-directed RNA polyme... 313 5.0e-28 1
UNIPROTKB|E1C548 - symbol:POLR1C "Uncharacterized protein... 312 6.4e-28 1
UNIPROTKB|F1RRJ4 - symbol:POLR1C "Uncharacterized protein... 312 6.4e-28 1
TAIR|locus:2036494 - symbol:RPAC43 "RNA polymerase I subu... 293 6.6e-26 1
WB|WBGene00019275 - symbol:rpac-40 species:6239 "Caenorha... 194 2.3e-25 2
ASPGD|ASPL0000043748 - symbol:AN2415 species:162425 "Emer... 172 3.1e-24 2
UNIPROTKB|G4MQN0 - symbol:MGG_09284 "DNA-directed RNA pol... 247 5.6e-21 1
UNIPROTKB|E7EQB9 - symbol:POLR1C "DNA-directed RNA polyme... 206 1.1e-20 2
UNIPROTKB|F1LXY3 - symbol:Polr1c "Protein Polr1c" species... 236 7.2e-20 1
UNIPROTKB|Q57648 - symbol:rpoD "DNA-directed RNA polymera... 142 9.5e-17 2
UNIPROTKB|D6RDJ3 - symbol:POLR1C "DNA-directed RNA polyme... 164 8.9e-12 1
UNIPROTKB|H0Y723 - symbol:POLR1C "DNA-directed RNA polyme... 162 1.5e-11 1
UNIPROTKB|H3BRR2 - symbol:POLR2C "DNA-directed RNA polyme... 109 1.1e-05 1
>TAIR|locus:2047168 [details] [associations]
symbol:NRPB3 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IPI] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IPI] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IPI] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03011
EMBL:AC006920 GO:GO:0000418 GO:GO:0000419 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:L34770 EMBL:AY063965 EMBL:AY096406 IPI:IPI00544466 PIR:S71176
RefSeq:NP_179145.1 UniGene:At.27427 ProteinModelPortal:Q39211
SMR:Q39211 IntAct:Q39211 STRING:Q39211 PaxDb:Q39211 PRIDE:Q39211
EnsemblPlants:AT2G15430.1 GeneID:816035 KEGG:ath:AT2G15430
TAIR:At2g15430 HOGENOM:HOG000230844 InParanoid:Q39211 OMA:KWQAGVA
PhylomeDB:Q39211 ProtClustDB:CLSN2683582 Genevestigator:Q39211
GermOnline:AT2G15430 Uniprot:Q39211
Length = 319
Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
Identities = 264/319 (82%), Positives = 292/319 (91%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDGA+YQRFPK+KIRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TS+DLYS+D +V PVDF + + + +GIIIVKLRRGQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAATVTFMYEP+I INED+M++LS EEK +ESSPTKVF +DP T QV VVD EAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
D+EVIKKAEAMGKPGL+EI K+DSFIFTVESTGA+KASQLVLNAI++LKQKLDAVRLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300
Query: 301 DTVEADDQFGELGAHMRGG 319
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>TAIR|locus:2047198 [details] [associations]
symbol:NRPE3B species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000419 "DNA-directed RNA polymerase V complex" evidence=IPI]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IPI] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AC006920 GO:GO:0000419 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 ProtClustDB:CLSN2683582 EMBL:L34771
EMBL:BT005715 EMBL:BT006072 IPI:IPI00547850 PIR:E84528 PIR:S71177
RefSeq:NP_179142.1 UniGene:At.40419 ProteinModelPortal:Q39212
SMR:Q39212 IntAct:Q39212 STRING:Q39212 PaxDb:Q39212 PRIDE:Q39212
EnsemblPlants:AT2G15400.1 GeneID:816032 KEGG:ath:AT2G15400
TAIR:At2g15400 InParanoid:Q39212 OMA:GFVYYKY PhylomeDB:Q39212
Genevestigator:Q39212 GermOnline:AT2G15400 Uniprot:Q39212
Length = 319
Score = 1267 (451.1 bits), Expect = 4.0e-129, P = 4.0e-129
Identities = 245/319 (76%), Positives = 281/319 (88%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG +YQRFP VKIRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD CEFCSVEF L AKC +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TS+DLYS+D +V PVDF + + + +GIII KLRRGQEL+L+A+ARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKW 180
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAATVT+MYEP+I INE++M +L+ EEK +ESSPTKVF IDP TGQV VVD EAYTY
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
D+EVIKKAEAMGKPGL+EI+ K DSF+FTVESTGA+KASQLVLNAI++LKQKLDA+RLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSD 300
Query: 301 DTVEADDQFGELGAHMRGG 319
+TVEADDQFGELGAHMR G
Sbjct: 301 NTVEADDQFGELGAHMREG 319
>DICTYBASE|DDB_G0292244 [details] [associations]
symbol:rpb3 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
dictyBase:DDB_G0292244 GenomeReviews:CM000155_GR GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 EMBL:AAFI02000188
GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:KWQAGVA RefSeq:XP_629750.1
ProteinModelPortal:Q54DH7 STRING:Q54DH7 PRIDE:Q54DH7
EnsemblProtists:DDB0216289 GeneID:8628579 KEGG:ddi:DDB_G0292244
ProtClustDB:CLSZ2728736 Uniprot:Q54DH7
Length = 302
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 145/292 (49%), Positives = 202/292 (69%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P+++I E+K+D F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
AHRLGLIPL S+ ++RDC D +C+ CSVE L KC ++ DVTS DL S
Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 126
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
+ +V+PV + S++ ++ I IVKLRRGQE++LRAIA+KG+GK+HAKWSP+ T
Sbjct: 127 QNSAVIPVS----SQVTSSNSEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVAT 182
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN--TGQVYVVDAEAYTYDDEVI 245
+ ++P I +N++ ++ L+ ++K+ WV S PTKV+ P+ T QV + D Y E
Sbjct: 183 YQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLECK 242
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
KKAE+ GKP LV + K+D FIFTVES+GA+K +VL AI+++K+KL ++
Sbjct: 243 KKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294
>UNIPROTKB|E1BV97 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AADN02065759
IPI:IPI00579063 RefSeq:XP_414001.1 UniGene:Gga.11991 PRIDE:E1BV97
Ensembl:ENSGALT00000001768 GeneID:415635 KEGG:gga:415635
NextBio:20819207 Uniprot:E1BV97
Length = 275
Score = 492 (178.3 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 105/191 (54%), Positives = 135/191 (70%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M++SRDC CD C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDC-TCDEF--CPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L S++ V+PV D D +Q I+IVKLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LISNNPRVIPVTSRSRDN-DPNDYVEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKWNP 178
Query: 183 AATVTFMYEPE 193
A V F Y+P+
Sbjct: 179 TAGVAFEYDPD 189
Score = 73 (30.8 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 24/104 (23%), Positives = 49/104 (47%)
Query: 207 EEKQSWVESSPTK--VFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKED 264
+E W +PT F+ DP+ + V + + + + + K +
Sbjct: 171 KEHAKW---NPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEEDAQAPYDPNGKPE 227
Query: 265 SFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR--LSEDTVEAD 306
F + VES G+++ +VL+A+ LK+KL ++ LS + +++D
Sbjct: 228 RFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE-IQSD 270
>UNIPROTKB|I3LCH3 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:FP326735
RefSeq:XP_003355849.1 Ensembl:ENSSSCT00000024584 GeneID:100620737
KEGG:ssc:100620737 Uniprot:I3LCH3
Length = 275
Score = 490 (177.5 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 105/193 (54%), Positives = 135/193 (69%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C+ C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TCEEF--CPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP+ Y D I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPSDYVEQDD---ILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPE 193
+P A V F Y+P+
Sbjct: 177 NPTAGVAFEYDPD 189
Score = 72 (30.4 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 24/104 (23%), Positives = 49/104 (47%)
Query: 207 EEKQSWVESSPTK--VFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKED 264
+E W +PT F+ DP+ + V + + + + + K +
Sbjct: 171 KEHAKW---NPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPE 227
Query: 265 SFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR--LSEDTVEAD 306
F + VES G+++ +VL+A+ LK+KL ++ LS + +++D
Sbjct: 228 RFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE-IQSD 270
>UNIPROTKB|Q3T0Q3 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 EMBL:BT030680 EMBL:BC102301 IPI:IPI00690694
RefSeq:NP_001029384.1 UniGene:Bt.49139 ProteinModelPortal:Q3T0Q3
STRING:Q3T0Q3 PRIDE:Q3T0Q3 Ensembl:ENSBTAT00000002420 GeneID:504452
KEGG:bta:504452 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 InParanoid:Q3T0Q3 OMA:NQPTVKI OrthoDB:EOG437RFC
NextBio:20866665 Uniprot:Q3T0Q3
Length = 275
Score = 488 (176.8 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 104/191 (54%), Positives = 135/191 (70%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C+ C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TCEEF--CPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L S+ V+PV + D D +Q I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDN-DPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 183 AATVTFMYEPE 193
A V F Y+P+
Sbjct: 179 TAGVAFEYDPD 189
Score = 72 (30.4 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 24/104 (23%), Positives = 49/104 (47%)
Query: 207 EEKQSWVESSPTK--VFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKED 264
+E W +PT F+ DP+ + V + + + + + K +
Sbjct: 171 KEHAKW---NPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPE 227
Query: 265 SFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR--LSEDTVEAD 306
F + VES G+++ +VL+A+ LK+KL ++ LS + +++D
Sbjct: 228 RFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE-IQSD 270
>UNIPROTKB|E2RQ42 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015630 "microtubule cytoskeleton"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 GO:GO:0015630
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AAEX03001573
EMBL:AAEX03001572 RefSeq:XP_535283.2 ProteinModelPortal:E2RQ42
PRIDE:E2RQ42 Ensembl:ENSCAFT00000013863 GeneID:478109
KEGG:cfa:478109 NextBio:20853480 Uniprot:E2RQ42
Length = 275
Score = 488 (176.8 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 104/191 (54%), Positives = 135/191 (70%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C+ C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TCEEF--CPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L S+ V+PV + D D +Q I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDN-DPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 183 AATVTFMYEPE 193
A V F Y+P+
Sbjct: 179 TAGVAFEYDPD 189
Score = 72 (30.4 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
Identities = 24/104 (23%), Positives = 49/104 (47%)
Query: 207 EEKQSWVESSPTK--VFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKED 264
+E W +PT F+ DP+ + V + + + + + K +
Sbjct: 171 KEHAKW---NPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPE 227
Query: 265 SFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR--LSEDTVEAD 306
F + VES G+++ +VL+A+ LK+KL ++ LS + +++D
Sbjct: 228 RFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE-IQSD 270
>FB|FBgn0026373 [details] [associations]
symbol:RpII33 "RNA polymerase II 33kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS;NAS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0034605 "cellular response to heat" evidence=IEP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005703 "polytene chromosome puff"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0005737 GO:GO:0005875 GO:GO:0034605 EMBL:AE014134
GO:GO:0003677 GO:GO:0006366 GO:GO:0005703 GO:GO:0003899 KO:K03011
GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
EMBL:AY060644 EMBL:AJ133650 RefSeq:NP_477419.1 UniGene:Dm.3412
HSSP:P16370 SMR:O97183 IntAct:O97183 MINT:MINT-801436 STRING:O97183
EnsemblMetazoa:FBtr0080544 GeneID:34796 KEGG:dme:Dmel_CG7885
UCSC:CG7885-RA CTD:34796 FlyBase:FBgn0026373 InParanoid:O97183
OrthoDB:EOG441NT4 GenomeRNAi:34796 NextBio:790263 Uniprot:O97183
Length = 275
Score = 475 (172.3 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 103/220 (46%), Positives = 141/220 (64%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L KC +QT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDF---CPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDST--DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L SS+ V+PV + D+ + I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFD 222
A V F Y+P+ + L + W +S T++ D
Sbjct: 180 TAGVCFEYDPDNSMRHTLYP-----KPDEWPKSEHTELED 214
Score = 82 (33.9 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
AK + F F VES GA+K +V+ ++VLK KL
Sbjct: 225 AKPNKFFFNVESAGALKPENIVVMGVQVLKNKL 257
>RGD|1306935 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide C"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
KO:K03011 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 HOGENOM:HOG000230844 CTD:5432
GeneTree:ENSGT00640000091532 HOVERGEN:HBG000897 OMA:NQPTVKI
EMBL:CH474006 EMBL:BC089905 IPI:IPI00476352 RefSeq:NP_001012491.1
UniGene:Rn.139399 SMR:Q5EB90 STRING:Q5EB90
Ensembl:ENSRNOT00000021639 GeneID:361365 KEGG:rno:361365
UCSC:RGD:1306935 NextBio:676047 Genevestigator:Q5EB90
Uniprot:Q5EB90
Length = 275
Score = 484 (175.4 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 103/191 (53%), Positives = 135/191 (70%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C+ C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TCEEF--CPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L S+ V+PV + D D +Q I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDN-DPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 183 AATVTFMYEPE 193
A V F Y+P+
Sbjct: 179 TAGVAFEYDPD 189
Score = 72 (30.4 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 24/104 (23%), Positives = 49/104 (47%)
Query: 207 EEKQSWVESSPTK--VFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKED 264
+E W +PT F+ DP+ + V + + + + + K +
Sbjct: 171 KEHAKW---NPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPE 227
Query: 265 SFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR--LSEDTVEAD 306
F + VES G+++ +VL+A+ LK+KL ++ LS + +++D
Sbjct: 228 RFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE-IQSD 270
>UNIPROTKB|P19387 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0015630 "microtubule
cytoskeleton" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0016032 GO:GO:0015630 GO:GO:0003677 Reactome:REACT_1675
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
EMBL:AC004382 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 GO:GO:0003899 KO:K03011 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
CTD:5432 HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC
EMBL:J05448 EMBL:AF008443 EMBL:AJ224143 EMBL:AJ224144 EMBL:BC000409
EMBL:BC003159 EMBL:BC028157 IPI:IPI00018288 PIR:A36264
RefSeq:NP_116558.1 UniGene:Hs.79402 ProteinModelPortal:P19387
SMR:P19387 DIP:DIP-32911N IntAct:P19387 MINT:MINT-270053
STRING:P19387 PhosphoSite:P19387 DMDM:3915850 PaxDb:P19387
PeptideAtlas:P19387 PRIDE:P19387 DNASU:5432 Ensembl:ENST00000219252
GeneID:5432 KEGG:hsa:5432 UCSC:uc002elt.1 GeneCards:GC16P057496
HGNC:HGNC:9189 HPA:HPA040919 HPA:HPA041826 MIM:180663
neXtProt:NX_P19387 PharmGKB:PA33509 InParanoid:P19387
PhylomeDB:P19387 GenomeRNAi:5432 NextBio:21017 ArrayExpress:P19387
Bgee:P19387 CleanEx:HS_POLR2C Genevestigator:P19387
GermOnline:ENSG00000102978 Uniprot:P19387
Length = 275
Score = 482 (174.7 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 103/191 (53%), Positives = 134/191 (70%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPL S+ + +++SRDC C+ C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDC-TCEEF--CPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L S+ V+PV + D D +Q I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDN-DPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 183 AATVTFMYEPE 193
A V F Y+P+
Sbjct: 179 TAGVAFEYDPD 189
Score = 72 (30.4 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 24/104 (23%), Positives = 49/104 (47%)
Query: 207 EEKQSWVESSPTK--VFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKED 264
+E W +PT F+ DP+ + V + + + + + K +
Sbjct: 171 KEHAKW---NPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPE 227
Query: 265 SFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR--LSEDTVEAD 306
F + VES G+++ +VL+A+ LK+KL ++ LS + +++D
Sbjct: 228 RFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE-IQSD 270
>MGI|MGI:109299 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide
C" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 MGI:MGI:109299 GO:GO:0005737 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 HOVERGEN:HBG000897 EMBL:D83999 IPI:IPI00129026
PIR:JC6181 UniGene:Mm.292492 ProteinModelPortal:P97760 SMR:P97760
IntAct:P97760 STRING:P97760 PhosphoSite:P97760 PaxDb:P97760
PRIDE:P97760 CleanEx:MM_POLR2C Genevestigator:P97760 Uniprot:P97760
Length = 275
Score = 467 (169.5 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 101/191 (52%), Positives = 133/191 (69%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C+ C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TCEEF--CPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L S+ V+PV + D D +Q I+IVKLR+GQELRLRA +K GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDN-DPNDYVEQDDILIVKLRKGQELRLRAYVKKRSGKEHAKWNP 178
Query: 183 AATVTFMYEPE 193
A V F Y+P+
Sbjct: 179 TAGVAFEYDPD 189
Score = 68 (29.0 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 207 EEKQSWVESSPTK--VFDIDPNTG---QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYA 261
+E W +PT F+ DP+ G VY E + + + E+ P +
Sbjct: 171 KEHAKW---NPTAGVAFEYDPDNGLRHTVYPKPEEGPKSEYSELDEDESQA-P--YDPNG 224
Query: 262 KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR--LSEDTVEAD 306
K + F + VES G+++ + L+A+ LK+KL ++ LS + +++D
Sbjct: 225 KPERFYYNVESCGSLRPETIGLSALSGLKKKLSDLQTQLSHE-IQSD 270
>SGD|S000001283 [details] [associations]
symbol:RPB3 "RNA polymerase II third largest subunit B44"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 SGD:S000001283 GO:GO:0046872 GO:GO:0003677
EMBL:BK006942 EMBL:Z46881 GO:GO:0006369 GO:GO:0003899
RefSeq:NP_012243.3 GeneID:854791 KEGG:sce:YIL021W KO:K03011
GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9
PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC
PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y
PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5
PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY
PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ
PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO
PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y
PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14
PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R
PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F
PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93
PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83
PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S
PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF
PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W
PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H
PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7
PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY
PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM
PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ
PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP
PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW
PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N
PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2
PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14
PDBsum:3S15 PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N
PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B
PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G
PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M
PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
OrthoDB:EOG4DV8VZ EMBL:M27496 PIR:S49961 RefSeq:NP_012250.3
ProteinModelPortal:P16370 SMR:P16370 DIP:DIP-837N IntAct:P16370
MINT:MINT-613688 STRING:P16370 PaxDb:P16370 PeptideAtlas:P16370
EnsemblFungi:YIL021W GeneID:854799 KEGG:sce:YIL014C-A CYGD:YIL021w
EvolutionaryTrace:P16370 NextBio:977585 Genevestigator:P16370
GermOnline:YIL021W Uniprot:P16370
Length = 318
Score = 436 (158.5 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 103/233 (44%), Positives = 142/233 (60%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC C+ C+ CSV L+A S+ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDC-FCED--HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
Y+P ++ + E S +E W +S + D PN G + A+A T+
Sbjct: 180 YDPWNKLKHTDYWYEQDSAKE---WPQSKNCEYED-PPNEGDPFDYKAQADTF 228
Score = 76 (31.8 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
A+ D+F VES G+I Q+V+ I+ L++K+ ++ L+ ++ D
Sbjct: 223 AQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 268
>ZFIN|ZDB-GENE-030131-6609 [details] [associations]
symbol:polr2c "polymerase (RNA) II (DNA directed)
polypeptide C" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 ZFIN:ZDB-GENE-030131-6609 GO:GO:0003677 GO:GO:0006351
EMBL:AL929309 GO:GO:0003899 KO:K03011 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC EMBL:BC046047
IPI:IPI00484221 RefSeq:NP_001161428.1 UniGene:Dr.81878
STRING:Q7ZV11 Ensembl:ENSDART00000043812 GeneID:334669
KEGG:dre:334669 InParanoid:Q7ZV11 NextBio:20810502 Uniprot:Q7ZV11
Length = 275
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 116/262 (44%), Positives = 159/262 (60%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD ++AN++RRV ++EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPLTS+ + M++SRDC CD C CSVE L +C DQT VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDC-TCDDF--CPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L S++ V+PV D D +Q I++VKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LLSNNPRVIPVTSRSRDN-DPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKV-FDIDPNTGQ----VYVVDAEA 237
A V F Y+P+ + + K + E V DPN G+ Y V++
Sbjct: 179 TAGVAFEYDPDNALRHTVYPIPQEWPKSEYSEIEEDGVQAQYDPN-GKPERFYYNVESCG 237
Query: 238 YTYDDEVIKKAEAMGKPGLVEI 259
+ ++ A AM K L ++
Sbjct: 238 SLRPETIVMSALAMLKKKLSDL 259
>UNIPROTKB|D4A8A8 [details] [associations]
symbol:Polr2c "Protein Polr2c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 OrthoDB:EOG437RFC IPI:IPI00779676
Ensembl:ENSRNOT00000061255 ArrayExpress:D4A8A8 Uniprot:D4A8A8
Length = 330
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 103/191 (53%), Positives = 135/191 (70%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C+ C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TCEEF--CPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L S+ V+PV + D D +Q I+IVKLR+GQELRLRA A+KG GK+HAKW+P
Sbjct: 120 LISNSPRVIPVTSRNRDN-DPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 183 AATVTFMYEPE 193
A V F Y+P+
Sbjct: 179 TAGVAFEYDPD 189
>CGD|CAL0002919 [details] [associations]
symbol:orf19.1248 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
CGD:CAL0002919 GO:GO:0042493 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AACQ01000068 EMBL:AACQ01000067
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 RefSeq:XP_716500.1 RefSeq:XP_716556.1
ProteinModelPortal:Q5A462 SMR:Q5A462 STRING:Q5A462 GeneID:3641812
GeneID:3641858 KEGG:cal:CaO19.1248 KEGG:cal:CaO19.8832
Uniprot:Q5A462
Length = 318
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 102/238 (42%), Positives = 139/238 (58%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V IRE + D+ F L++ D ++AN++RR +IAEVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE ++ +SRDC CD C CSV L A C ++ T++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDC-TCDN--YCSKCSVTLQLIANCATESTMNVYASDLQKMS 125
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
H+ + DP D Q RG +I KLR+ QEL L IA+KGI K+HAKWSP A + F
Sbjct: 126 HNGSKLG--DPVIRDP--QARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFE 181
Query: 190 YEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDI-DPNTGQVYVVDAEAYTYDDEVI 245
Y+P + D + E + W +S + DP Y Y +D E +
Sbjct: 182 YDPWNKLKHTDYWYEVDAEAE--WPKSKNCDWEEAPDPEAPFDYKAKPSTYYFDVETV 237
>UNIPROTKB|Q5A462 [details] [associations]
symbol:RPB3 "Putative uncharacterized protein RPB3"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
CGD:CAL0002919 GO:GO:0042493 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AACQ01000068 EMBL:AACQ01000067
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 RefSeq:XP_716500.1 RefSeq:XP_716556.1
ProteinModelPortal:Q5A462 SMR:Q5A462 STRING:Q5A462 GeneID:3641812
GeneID:3641858 KEGG:cal:CaO19.1248 KEGG:cal:CaO19.8832
Uniprot:Q5A462
Length = 318
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 102/238 (42%), Positives = 139/238 (58%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V IRE + D+ F L++ D ++AN++RR +IAEVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE ++ +SRDC CD C CSV L A C ++ T++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDC-TCDN--YCSKCSVTLQLIANCATESTMNVYASDLQKMS 125
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
H+ + DP D Q RG +I KLR+ QEL L IA+KGI K+HAKWSP A + F
Sbjct: 126 HNGSKLG--DPVIRDP--QARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFE 181
Query: 190 YEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDI-DPNTGQVYVVDAEAYTYDDEVI 245
Y+P + D + E + W +S + DP Y Y +D E +
Sbjct: 182 YDPWNKLKHTDYWYEVDAEAE--WPKSKNCDWEEAPDPEAPFDYKAKPSTYYFDVETV 237
>POMBASE|SPCC1442.10c [details] [associations]
symbol:rpb3 "RNA polymerase II subunit 3" species:4896
"Schizosaccharomyces pombe" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IC] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
PomBase:SPCC1442.10c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006366 GO:GO:0003899
KO:K03011 GO:GO:0005665 PDB:3H0G PDBsum:3H0G eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 OMA:NQPTVKI EMBL:D15070 EMBL:D50661
EMBL:D50662 PIR:S43201 PIR:T40975 RefSeq:NP_588324.1
ProteinModelPortal:P37382 SMR:P37382 IntAct:P37382
MINT:MINT-1213878 STRING:P37382 EnsemblFungi:SPCC1442.10c.1
GeneID:2538816 KEGG:spo:SPCC1442.10c OrthoDB:EOG4DV8VZ
EvolutionaryTrace:P37382 NextBio:20799998 Uniprot:P37382
Length = 297
Score = 401 (146.2 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 86/188 (45%), Positives = 123/188 (65%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ IR + + F L +T ++AN+LRRV++AE+PT+AIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 72 GLIPLTSERA-----MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY 126
G+IPL S + + ++R+CD CD C CSVE L AKC + T+++ ++DL
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCD-CDQ--YCPKCSVELFLNAKCTGEGTMEIYARDLV 123
Query: 127 SSDHSVV--PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
S +S + P+ DP + RG +I KLR+ QE+ LR IA+KGI K+HAKWSP +
Sbjct: 124 VSSNSSLGHPI-LADP-------KSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTS 175
Query: 185 TVTFMYEP 192
V F Y+P
Sbjct: 176 AVAFEYDP 183
Score = 54 (24.1 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 266 FIFTVESTGAIKASQLVLNAIEVLKQKL 293
F VES G+I +++++ + +L++KL
Sbjct: 229 FYMDVESVGSIPPNEIMVQGLRILQEKL 256
>WB|WBGene00007971 [details] [associations]
symbol:rpb-3 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 EMBL:Z80215 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0003677 GO:GO:0040011 GO:GO:0000003
GO:GO:0006351 GO:GO:0003899 KO:K03011 GO:GO:0001703 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
PIR:T19774 RefSeq:NP_492361.2 UniGene:Cel.32712
ProteinModelPortal:Q93338 SMR:Q93338 STRING:Q93338 PaxDb:Q93338
EnsemblMetazoa:C36B1.3 GeneID:172680 KEGG:cel:CELE_C36B1.3
UCSC:C36B1.3 CTD:172680 WormBase:C36B1.3 InParanoid:Q93338
NextBio:876551 Uniprot:Q93338
Length = 282
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 98/232 (42%), Positives = 140/232 (60%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P +++ EL +D KF L DTD S+AN+LRRV +AEVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 66 FIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIP S+ M+++RDC+ + C+ CS+ F L+ KC + TL VT++
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAEF---CDECSIPFILQMKCKDEATLAVTTEH 119
Query: 125 L---YSSDHSVVPV--DFVDPAGY--DSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
L ++ D +V P + G D + I+IVKLR+GQEL L+A +KG GK+H
Sbjct: 120 LMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFGKEH 179
Query: 178 AKWSPAATVTFMYEPEIHINEDL---MESLSLEEKQSWVESSPTKVFDIDPN 226
AKW+P V F Y+P+ + + +E + S E S K +P+
Sbjct: 180 AKWNPTCGVAFEYDPDNALRHTIYPNVEEWPRSDHSSLPEDSTEKEAPFEPD 231
>ASPGD|ASPL0000005413 [details] [associations]
symbol:AN6252 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:AACD01000107
EMBL:BN001301 GO:GO:0003899 KO:K03011 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 OrthoDB:EOG4DV8VZ RefSeq:XP_663856.1
ProteinModelPortal:Q5AZM8 SMR:Q5AZM8 STRING:Q5AZM8
EnsemblFungi:CADANIAT00006740 GeneID:2870835 KEGG:ani:AN6252.2
OMA:EPFDYNA Uniprot:Q5AZM8
Length = 333
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 94/237 (39%), Positives = 140/237 (59%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L D + AN+LRRVM+AE+PT+AID+VE+E NSSVL DE +AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLGLIPL S+ + ++RDC+ C+ C CSV L A+C SD+ + V ++DL +
Sbjct: 72 RLGLIPLDSKNCDQDVEYTRDCE-CED--HCARCSVTLSLHARCTSDEIMRVYARDLVIT 128
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
++V D G +I KLRRGQEL++ IA+KGI K+H+KW+P A + F
Sbjct: 129 GERAN--EWVGNPVITDPDGN-GPLICKLRRGQELKMTCIAKKGIAKEHSKWAPTAAIGF 185
Query: 189 MYEPEI---HIN----EDLMESLSLEEKQSWVESSPT-KVFDIDPNTGQVYVVDAEA 237
Y+P H++ ED ++ + +W ++P + FD D Y+ D E+
Sbjct: 186 EYDPHNNLRHVDYWYEEDPVKEWPVSHNAAWEPAAPADQPFDYDAQPNNFYI-DVES 241
>POMBASE|SPBC1289.07c [details] [associations]
symbol:rpc40 "DNA-directed RNA polymerase I and III
subunit Rpc40" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IGI] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IGI] [GO:0006995 "cellular
response to nitrogen starvation" evidence=IMP] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IGI]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 PomBase:SPBC1289.07c GO:GO:0005829
GO:GO:0070317 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006995 GO:GO:0006383 GO:GO:0006360 GO:GO:0005736
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0202 HOGENOM:HOG000230845
KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AF082512 EMBL:AB021859 PIR:T39358 RefSeq:NP_596831.1
ProteinModelPortal:O94616 DIP:DIP-29538N STRING:O94616
EnsemblFungi:SPBC1289.07c.1 GeneID:2539663 KEGG:spo:SPBC1289.07c
OMA:TVSRECL OrthoDB:EOG4VX5F0 NextBio:20800817 Uniprot:O94616
Length = 348
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 102/311 (32%), Positives = 158/311 (50%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV I L + FE+ DAS+ANA RR++IAE+PT+A + V I N+S++ DE ++HR
Sbjct: 47 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYS 127
+GL+P++++ M F + ++ +V F L KC ++ KD LY
Sbjct: 107 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 165
Query: 128 SDHSVVPVDFV-DPAGYDS---TDQ-----QRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ V D + P G D I++ KLR GQE+ L A A GIG+DHA
Sbjct: 166 NSE-VYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHA 224
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID--PN-TGQVYVVDA 235
K+SP AT ++ P IHI + + E+ + + P V +++ P+ Q V D
Sbjct: 225 KFSPVATASYRLLPTIHI----LSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVADV 280
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
T E ++ E K V++ D ++F+VESTG +K L + +I VLK K A
Sbjct: 281 RKDTVSRECLRHPEFADK---VQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKCLA 337
Query: 296 VRLSEDTVEAD 306
V+ S + +D
Sbjct: 338 VKSSLQNISSD 348
>CGD|CAL0005950 [details] [associations]
symbol:RPC40 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IEA] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 CGD:CAL0005950 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0003899
eggNOG:COG0202 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 RefSeq:XP_714923.1 RefSeq:XP_714986.1
ProteinModelPortal:Q59ZF5 STRING:Q59ZF5 GeneID:3643382
GeneID:3643427 KEGG:cal:CaO19.11048 KEGG:cal:CaO19.3564
Uniprot:Q59ZF5
Length = 369
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 104/299 (34%), Positives = 153/299 (51%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI L + F+L D S+ANA RR+MIAEVP++A + V + +N+SV+ DE +A R
Sbjct: 76 EIKITNLSERTGTFDLIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQR 135
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYS 127
+GLIP + D D E ++ L C + S D LY
Sbjct: 136 IGLIPWKIDPDKLTWVDETVDI--NDRFTEDNTIVLSLDVACSKNPHAPKNSTDPRELYK 193
Query: 128 SDHSVVPVDF-VDPAG-----YDSTDQ---QRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ H V DF +P G + T I++ KLR GQE+ LRA GIG DHA
Sbjct: 194 NSH-VYAKDFKFEPHGNQEEKFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHA 252
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
K+SP AT ++ P I I E + L+ + ++ + P V ID N G+ YV DA
Sbjct: 253 KFSPVATASYRLLPVIDIKEPITGELAKKFQKCF----PPGVIGIDAN-GKAYVKDARKD 307
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ E GK V++ + D FIF VESTGA+ +++ ++ +LK K + +R
Sbjct: 308 TVSREVLRHPEFDGK---VQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAEYLR 363
>DICTYBASE|DDB_G0282339 [details] [associations]
symbol:rpa5 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 dictyBase:DDB_G0282339
EMBL:AAFI02000047 GenomeReviews:CM000152_GR GO:GO:0003677
GO:GO:0006383 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
GO:GO:0003899 eggNOG:COG0202 KO:K03027 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
RefSeq:XP_640267.1 ProteinModelPortal:Q54SN4 STRING:Q54SN4
PRIDE:Q54SN4 EnsemblProtists:DDB0216288 GeneID:8623528
KEGG:ddi:DDB_G0282339 ProtClustDB:CLSZ2729016 Uniprot:Q54SN4
Length = 345
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 97/296 (32%), Positives = 156/296 (52%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I + FE+ DA +ANALRR+MI+E+PT+AI+ V I N+S+L DE +AHR
Sbjct: 60 KINILSESANELVFEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHR 119
Query: 71 LGLIPLTSE-RAMSMRF-SRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
LG+IP+ + R + + +++ A D ++ F L+ KC D + S
Sbjct: 120 LGMIPIKVDPRKFNFKLPNKEYTAED--------TLIFQLKVKCEKDSVTGKIINETALS 171
Query: 129 DHSV-VPVDFVDPAGYDSTDQQR----GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
H + VP + + D+ R I I+KLR GQ + ++ K IG++H KWSP
Sbjct: 172 KHLIWVPTQDQEEMFPNEEDRPRPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSPV 231
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
T ++ +P I +++ S+ ++ +E P KVFDI+ ++GQV T E
Sbjct: 232 CTASYRLQPVISVDK----SIKGDKANQLLEKCPKKVFDIE-DSGQVVAARPLDCTMCRE 286
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
I+ E V+I D FIF++ESTGA+K+ ++ AI++ +K + V S
Sbjct: 287 CIRDPEFEQN---VKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIVEES 339
>SGD|S000006314 [details] [associations]
symbol:RPC40 "RNA polymerase subunit AC40" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IC] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
SGD:S000006314 GO:GO:0003677 EMBL:BK006949 GO:GO:0006360
EMBL:U32445 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 Reactome:REACT_87991 GO:GO:0042797
eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
OMA:TVSRECL OrthoDB:EOG4VX5F0 EMBL:M15499 PIR:A25968
RefSeq:NP_015435.1 ProteinModelPortal:P07703 SMR:P07703 DIP:DIP-17N
IntAct:P07703 MINT:MINT-395916 STRING:P07703 PaxDb:P07703
PeptideAtlas:P07703 EnsemblFungi:YPR110C GeneID:856226
KEGG:sce:YPR110C CYGD:YPR110c NextBio:981464 Genevestigator:P07703
GermOnline:YPR110C Uniprot:P07703
Length = 335
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 98/299 (32%), Positives = 155/299 (51%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I L A F+L + D S+ANA RR+MI+EVP++A + V N+SV+ DE +AHR
Sbjct: 41 EVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTS-KDLYS 127
+GL+PL + M D + D + + ++ L KC + D T K+LY+
Sbjct: 101 IGLVPLKVDPDMLTWV--DSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 128 SDHSVVPVDF-VDPAGYDSTD--------QQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ H V D +P G ST I++ KLR GQE+ L+A GIG DHA
Sbjct: 159 NAH-VYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHA 217
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
K+SP +T ++ P+I+I ++ + E + + + P V ID + + YV DA
Sbjct: 218 KFSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKD 273
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ E K V++ + FIF VES GA+ ++ ++ +LK K + ++
Sbjct: 274 TVSREVLRYEEFADK---VKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 329
>ZFIN|ZDB-GENE-040426-1495 [details] [associations]
symbol:polr1c "polymerase (RNA) I polypeptide C"
species:7955 "Danio rerio" [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 ZFIN:ZDB-GENE-040426-1495
GO:GO:0003677 GO:GO:0006351 EMBL:AL928951 GO:GO:0003899
eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
HOVERGEN:HBG017743 OMA:GKCQRFL OrthoDB:EOG47SSF0
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 IPI:IPI00491988
Ensembl:ENSDART00000128246 InParanoid:A2ATX1 Uniprot:A2ATX1
Length = 362
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 99/322 (30%), Positives = 163/322 (50%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D +++F K ++I ++ +F++ DA++ANA RR+++AEVPT+AI+ V I N
Sbjct: 54 DTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNN 113
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
+S++ DE +AHRLGL+P+ ++ R R S D + + D +++ L+ KC +
Sbjct: 114 TSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPR 167
Query: 118 LDVTSKD---------LYSSDHSVVPV-DFVDPAGYDSTDQQRG-IIIVKLRRGQELRLR 166
S D +YS D +P+ + D G I++ ++R GQEL +
Sbjct: 168 APKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIV 227
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
KGIGKDHAK+SP AT ++ PEI L++++ E+ + V +++
Sbjct: 228 MHCVKGIGKDHAKFSPVATASYRLLPEI----TLLQTIEGEQAERLKRCFSPGVIELENV 283
Query: 227 TGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
G+ VV++ T EV++ + LV++ D FIF+VESTG + LV
Sbjct: 284 NGRKVAKVVNSRLDTCSREVLRHDDLKS---LVKLGRVRDHFIFSVESTGILPPDVLVTE 340
Query: 285 AIEVLKQKLDAVRLSEDTVEAD 306
AI VL K + E D
Sbjct: 341 AINVLMSKCQKFLTELEATEMD 362
>FB|FBgn0031657 [details] [associations]
symbol:CG3756 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;NAS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=NAS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=NAS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 GO:GO:0005875 EMBL:AE014134 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
GeneTree:ENSGT00550000075060 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL EMBL:AY119625
RefSeq:NP_608885.1 UniGene:Dm.30765 SMR:Q9VMX3 IntAct:Q9VMX3
MINT:MINT-1550361 STRING:Q9VMX3 EnsemblMetazoa:FBtr0078994
GeneID:33712 KEGG:dme:Dmel_CG3756 UCSC:CG3756-RA
FlyBase:FBgn0031657 InParanoid:Q9VMX3 OrthoDB:EOG4X95ZS
GenomeRNAi:33712 NextBio:784915 Uniprot:Q9VMX3
Length = 333
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 107/321 (33%), Positives = 166/321 (51%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D S Q F + +KI +D +F+L ++ANA RR+M+++VP++AI+ V I N
Sbjct: 30 DVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNN 89
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSD 115
+S++ DE +AHR+GL+PL ++ R + R +A G Q ++EF L+ KC D
Sbjct: 90 TSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEA--GTEQD---TLEFELKVKCSRRRD 144
Query: 116 QTLDVTSKDLYSSDHSVVP--VDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRL 165
D ++ D +H V + ++ P G + I+I +LR G EL L
Sbjct: 145 AGKDQSNFDDIYKNHKVYSGHLKWL-PKGKQAQIYSESAVNCIHDDILIAQLRPGHELDL 203
Query: 166 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDP 225
R +A KG+G+DHAK+SP AT T+ P I +N ++ + + + SP V ID
Sbjct: 204 RLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCF---SPG-VIGIDE 259
Query: 226 NTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNA 285
N YV DA T V + + L I D +IF+VES GA+K + L A
Sbjct: 260 NE-TAYVKDARYDTCSRNVYRYPQLNDAVTLARI---RDHYIFSVESVGALKPDVIFLEA 315
Query: 286 IEVLKQKLDAVRLSEDTVEAD 306
++VLK+K A+ D +EA+
Sbjct: 316 VKVLKRKCRALI---DEIEAE 333
>UNIPROTKB|E2RH57 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 CTD:9533 GeneTree:ENSGT00550000075060 KO:K03027
OMA:GKCQRFL Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AAEX03008344 RefSeq:XP_532147.1 ProteinModelPortal:E2RH57
Ensembl:ENSCAFT00000002964 GeneID:474912 KEGG:cfa:474912
NextBio:20850849 Uniprot:E2RH57
Length = 346
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 104/317 (32%), Positives = 160/317 (50%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D RF K V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N
Sbjct: 38 DAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNN 97
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEF-----CSVEFHLRAKC 112
+S++ DE +AHRLGLIP+ ++ R R D + + D +F C+ H AK
Sbjct: 98 TSIVQDEILAHRLGLIPIHADPRLFEYRNQGDDEGTEID-TLQFRLQVRCTRNPHA-AKD 155
Query: 113 HSDQTLDVTSKDLYSSDHSVVPV-DFVD--PAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
SD + +YS + VP+ + D P G I+I +LR GQE+ L
Sbjct: 156 SSDPNELYVNHKVYSRHMTWVPLGNQADLFPEG-TIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I + E + E + EE +V ++
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDITLLEPV-EGDAAEELSRCFSPGVIEVQEVQGKK-V 272
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
V + T+ EV +K E + K +V + D +IF+VESTG + LV AI+VL
Sbjct: 273 ARVANPRLDTFSREVFRK-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVL 329
Query: 290 KQKLDAVRLSEDTVEAD 306
K D V+ D
Sbjct: 330 MGKCRRFLDELDAVQMD 346
>MGI|MGI:103288 [details] [associations]
symbol:Polr1c "polymerase (RNA) I polypeptide C"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] Reactome:REACT_78136
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 MGI:MGI:103288 GO:GO:0005654
GO:GO:0003677 GO:GO:0006351 EMBL:CH466559 GO:GO:0003899
Reactome:REACT_86751 CleanEx:MM_POLR1E CTD:9533 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOVERGEN:HBG017743 KO:K03027
OMA:GKCQRFL OrthoDB:EOG47SSF0 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 EMBL:D31966 EMBL:AK132114 EMBL:AK146240
IPI:IPI00816991 PIR:A55082 RefSeq:NP_033111.2 UniGene:Mm.3458
ProteinModelPortal:P52432 SMR:P52432 STRING:P52432
PhosphoSite:P52432 PaxDb:P52432 PRIDE:P52432
Ensembl:ENSMUST00000087026 GeneID:20016 KEGG:mmu:20016
InParanoid:Q3UJZ9 NextBio:297517 Bgee:P52432 Genevestigator:P52432
GermOnline:ENSMUSG00000067148 Uniprot:P52432
Length = 346
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 105/324 (32%), Positives = 166/324 (51%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D RF K V + ++ +D +F++ DA++ANA RR+++AEVPT+A++ V + N
Sbjct: 38 DAWDQNRFEKNFRVDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNN 97
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
+S++ DE +AHRLGLIP+ ++ R R + + +G E +++F L+ +C +
Sbjct: 98 TSIVQDEILAHRLGLIPILADPRLFEYR-----NQGEEEGT-EIDTLQFRLQVRCTRNPN 151
Query: 118 LDVTSKD---LYSSDHSVVP--VDFVDPAGYDSTDQQRG--------IIIVKLRRGQELR 164
S D LY + H V + +V P G + G I+I +LR GQE+
Sbjct: 152 AAKDSSDPNELYVN-HKVYTRHMTWV-PLGNQADVFPEGTIRPVHDDILIAQLRPGQEID 209
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L KGIGKDHAK+SP AT ++ P I + E + + E Q + SP V +++
Sbjct: 210 LMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCF---SPG-VIEVE 265
Query: 225 PNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
G+ V +A T+ E+ + E + K V + D +IF+VESTG + LV
Sbjct: 266 EVQGKKVARVANARLDTFSREIFRH-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLV 322
Query: 283 LNAIEVLKQKLDAVRLSEDTVEAD 306
AI++L K D VE D
Sbjct: 323 SEAIKILMGKCRRFLDELDAVEMD 346
>UNIPROTKB|Q32L22 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:BC109803 IPI:IPI00709012
RefSeq:NP_001033213.1 UniGene:Bt.42189 ProteinModelPortal:Q32L22
STRING:Q32L22 PRIDE:Q32L22 Ensembl:ENSBTAT00000025246 GeneID:516337
KEGG:bta:516337 CTD:9533 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
HOVERGEN:HBG017743 InParanoid:Q32L22 KO:K03027 OMA:GKCQRFL
OrthoDB:EOG47SSF0 NextBio:20872197 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 Uniprot:Q32L22
Length = 346
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 105/322 (32%), Positives = 161/322 (50%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D RF K V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N
Sbjct: 38 DAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNN 97
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
+S++ DE +AHRLGLIP+ ++ R R D +G E +++F L+ +C +
Sbjct: 98 TSIVQDEILAHRLGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPH 151
Query: 118 LDVTSKD---LYSSDHSVVP--VDFVDPAGYDSTDQQRG--------IIIVKLRRGQELR 164
S D LY + H V + +V P G + G I+I +LR GQE+
Sbjct: 152 AAKDSSDPNELYVN-HRVYTRHMTWV-PLGNQADLFPEGAIRPVHDDILIAQLRPGQEID 209
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L KGIGKDHAK+SP AT ++ P+I + E + E + EE +V +I
Sbjct: 210 LLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPV-EGEAAEELSRCFSPGVIEVQEIQ 268
Query: 225 PNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
V + T+ EV + E + K +V + D FIF+VESTG + LV
Sbjct: 269 GKK-VARVANPRLDTFSREVFRN-EKLKK--VVRLARVRDHFIFSVESTGVLPPDVLVSE 324
Query: 285 AIEVLKQKLDAVRLSEDTVEAD 306
AI+VL K D V+ D
Sbjct: 325 AIKVLMGKCQRFLDELDAVQMD 346
>TAIR|locus:2025855 [details] [associations]
symbol:ATRPAC42 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 SMART:SM00662
EMBL:CP002684 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
EMBL:AC079675 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AK226775 IPI:IPI00518314
PIR:H96633 RefSeq:NP_176282.1 RefSeq:NP_849833.1 UniGene:At.8270
ProteinModelPortal:Q9C6C2 SMR:Q9C6C2 STRING:Q9C6C2 PRIDE:Q9C6C2
EnsemblPlants:AT1G60850.1 EnsemblPlants:AT1G60850.2 GeneID:842377
KEGG:ath:AT1G60850 TAIR:At1g60850 InParanoid:Q9C6C2 OMA:EHAKHQG
PhylomeDB:Q9C6C2 ProtClustDB:CLSN2681820 Genevestigator:Q9C6C2
Uniprot:Q9C6C2
Length = 375
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 100/319 (31%), Positives = 156/319 (48%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G Y F KV + L +F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVT 121
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 180
Query: 122 SKDLY-----------SSDHSVVPVDFVD-PAGYDS---------TDQQRGIIIVKLRRG 160
+ DL S + + P + DS T I+I KL G
Sbjct: 181 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 240
Query: 161 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKV 220
QE+ L A A KGIGK HAKWSP T + PE+ + ++ + L+ + V P V
Sbjct: 241 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 296
Query: 221 FDI-DPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 277
FDI D G+ V T E ++ + + V++ + ++ FIF +ESTG++
Sbjct: 297 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 353
Query: 278 ASQLVLNAIEVLKQKLDAV 296
L A+++L+ K +A+
Sbjct: 354 PEVLFTEAVKILEAKCEAI 372
>UNIPROTKB|Q5RJK9 [details] [associations]
symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CH473987 CTD:9533 eggNOG:COG0202 GeneTree:ENSGT00550000075060
HOGENOM:HOG000230845 HOVERGEN:HBG017743 KO:K03027 OrthoDB:EOG47SSF0
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
RGD:1309689 EMBL:BC086597 IPI:IPI00373754 RefSeq:NP_001008331.1
UniGene:Rn.107990 STRING:Q5RJK9 Ensembl:ENSRNOT00000025787
GeneID:301246 KEGG:rno:301246 InParanoid:Q5RJK9 NextBio:648381
Genevestigator:Q5RJK9 Uniprot:Q5RJK9
Length = 346
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 102/322 (31%), Positives = 161/322 (50%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D RF K V + + + +F++ DA++ANA RR+++AEVPT+A++ V + N
Sbjct: 38 DAWDQDRFEKNFRVDVVHMDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNN 97
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
+S++ DE +AHRLGLIP+ ++ R R + + +G E +++F L+ +C + +
Sbjct: 98 TSIVQDEILAHRLGLIPILADPRLFEYR-----NPGEEEGT-EIDTLQFRLQVRCTRNPS 151
Query: 118 LDVTSKD---LYSSDHSVVP--VDFVDPAGYDSTDQQRG--------IIIVKLRRGQELR 164
S D LY + H V + +V P G + G I+I +LR GQE+
Sbjct: 152 AAKDSSDPNELYVN-HKVYTRHMTWV-PLGNQADVFPEGTVRPVHDDILIAQLRPGQEID 209
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L KGIGKDHAK+SP AT ++ P+I + E + E + EE V ++
Sbjct: 210 LMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPV-EGEAAEELSQCFSPGVIAVQEVQ 268
Query: 225 PNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
V +A T+ E+ + E + K V + D +IF+VESTG + LV
Sbjct: 269 GKK-VARVANARLDTFSREIFRH-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSE 324
Query: 285 AIEVLKQKLDAVRLSEDTVEAD 306
AI++L K D VE D
Sbjct: 325 AIKILMGKCRRFLDELDAVEMD 346
>UNIPROTKB|O15160 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005654 GO:GO:0003677 Reactome:REACT_1788
GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0005736
GO:GO:0003899 GO:GO:0006386 GO:GO:0006385 EMBL:AL355802
CleanEx:HS_POLR1E CTD:9533 eggNOG:COG0202 HOGENOM:HOG000230845
HOVERGEN:HBG017743 KO:K03027 OMA:GKCQRFL Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AF008442 EMBL:AF047441
EMBL:BC008863 IPI:IPI00005179 IPI:IPI00217386 RefSeq:NP_976035.1
UniGene:Hs.584839 ProteinModelPortal:O15160 SMR:O15160
DIP:DIP-27587N IntAct:O15160 MINT:MINT-1137932 STRING:O15160
PhosphoSite:O15160 REPRODUCTION-2DPAGE:IPI00217386
SWISS-2DPAGE:O15160 PaxDb:O15160 PRIDE:O15160 DNASU:9533
Ensembl:ENST00000304004 Ensembl:ENST00000372389 GeneID:9533
KEGG:hsa:9533 UCSC:uc003ovn.3 UCSC:uc003ovo.2 GeneCards:GC06P043484
H-InvDB:HIX0005907 HGNC:HGNC:20194 HPA:HPA031010 MIM:248390
MIM:610060 neXtProt:NX_O15160 Orphanet:861 PharmGKB:PA134882004
InParanoid:O15160 PhylomeDB:O15160 GenomeRNAi:9533 NextBio:35740
ArrayExpress:O15160 Bgee:O15160 CleanEx:HS_POLR1C
Genevestigator:O15160 GermOnline:ENSG00000171453 Uniprot:O15160
Length = 346
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 100/317 (31%), Positives = 159/317 (50%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D RF K V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N
Sbjct: 38 DAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNN 97
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEF-----CSVEFHLRAKC 112
+S++ DE +AHRLGLIP+ ++ R R D + + D +F C+ H AK
Sbjct: 98 TSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID-TLQFRLQVRCTRNPHA-AKD 155
Query: 113 HSDQTLDVTSKDLYSSDHSVVPV-DFVD--PAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + D P G I+I +LR GQE+ L
Sbjct: 156 SSDPNELYVNHKVYTRHMTWIPLGNQADLFPEG-TIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I + E + E + EE +V ++
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDITLLEPV-EGEAAEELSRCFSPGVIEVQEVQGKK-V 272
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
V + T+ E+ + E + K +V + D +IF+VESTG + LV AI+VL
Sbjct: 273 ARVANPRLDTFSREIFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVL 329
Query: 290 KQKLDAVRLSEDTVEAD 306
K D V+ D
Sbjct: 330 MGKCRRFLDELDAVQMD 346
>UNIPROTKB|E1C548 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 CTD:9533
GeneTree:ENSGT00550000075060 KO:K03027 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AADN02011864 IPI:IPI00572554 RefSeq:XP_419502.1
UniGene:Gga.1059 Ensembl:ENSGALT00000016848 GeneID:421452
KEGG:gga:421452 NextBio:20824218 Uniprot:E1C548
Length = 346
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 98/295 (33%), Positives = 153/295 (51%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
+RE +D +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHRLGL
Sbjct: 54 VRE-EDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGL 112
Query: 74 IPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-------- 124
IP+ ++ R R + D +G E +++F L+ KC + S D
Sbjct: 113 IPIRADPRLFEYR-----NQGDEEGT-EIDTLQFQLKIKCSRNPQAAKESSDPNELYFNH 166
Query: 125 -LYSSDHSVVPV----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+YS + VP+ D A + I+I LR GQE+ + KGIGKDHAK
Sbjct: 167 KVYSKHMTWVPLGNQTDLFPDADFRPVHDD--ILIALLRPGQEIDVLMHCVKGIGKDHAK 224
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAEA 237
+SP AT ++ P+I + + + E + E Q SP V +I G+ V +A
Sbjct: 225 FSPVATASYRLLPDITLLQPV-EDEAAETLQKCF--SPG-VIEIQNIKGKKVARVANARL 280
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
T+ EV + G LV + + +IF+VESTG + LV AI++L K
Sbjct: 281 DTFSREVFRHE---GLKNLVRLARVRNHYIFSVESTGILPPDVLVTEAIKILMGK 332
>UNIPROTKB|F1RRJ4 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CU928765 GeneTree:ENSGT00550000075060 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
Ensembl:ENSSSCT00000028506 ArrayExpress:F1RRJ4 Uniprot:F1RRJ4
Length = 351
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 103/322 (31%), Positives = 163/322 (50%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D RF K V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N
Sbjct: 43 DAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNN 102
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
+S++ DE +AHRLGLIP+ ++ R R + D +G E +++F L+ +C + +
Sbjct: 103 TSIVQDEILAHRLGLIPIHADPRLFEYR-----NLGDEEGT-EIDTLQFRLQVRCTRNPS 156
Query: 118 LDVTSKD---LYSSDHSVVP--VDFVDPAGYDSTDQQRG--------IIIVKLRRGQELR 164
S D LY + H V + +V P G + G I+I +LR GQE+
Sbjct: 157 AAKDSSDPNELYVN-HKVYTRHMTWV-PLGNQADLFPEGTIRPVHDDILIAQLRPGQEID 214
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L KGIGKDHAK+SP AT ++ P+I + E + E + EE +V +I
Sbjct: 215 LLMQCVKGIGKDHAKFSPVATASYRLLPDITLLEPV-EGDAAEELSRCFSPGVIEVQEIQ 273
Query: 225 PNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
V + T+ EV + + + K +V + D +IF+VESTG + LV
Sbjct: 274 GKK-VARVANPRLDTFSREVFRN-DMLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSE 329
Query: 285 AIEVLKQKLDAVRLSEDTVEAD 306
AI+VL K D V+ D
Sbjct: 330 AIKVLMGKCRRFLDELDAVQMD 351
>TAIR|locus:2036494 [details] [associations]
symbol:RPAC43 "RNA polymerase I subunit 43" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677
GO:GO:0006351 EMBL:AC002292 GO:GO:0003899 eggNOG:COG0202
HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:TVSRECL EMBL:L34773 EMBL:AF386969 EMBL:BT001161
IPI:IPI00538979 PIR:D96631 RefSeq:NP_176261.1 UniGene:At.8271
ProteinModelPortal:Q39216 SMR:Q39216 STRING:Q39216 PaxDb:Q39216
PRIDE:Q39216 EnsemblPlants:AT1G60620.1 GeneID:842356
KEGG:ath:AT1G60620 TAIR:At1g60620 InParanoid:Q39216
PhylomeDB:Q39216 ProtClustDB:CLSN2914384 ArrayExpress:Q39216
Genevestigator:Q39216 Uniprot:Q39216
Length = 385
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 98/314 (31%), Positives = 154/314 (49%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV + L + F++ A +ANA RR+++AE+P++AI+ V + N+SV+ DE +AHR
Sbjct: 82 KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDLY--- 126
LGLIP+ ++ + S + D E ++ F L KC D V + +L
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLP 195
Query: 127 --------SSDHSVVPVDFVD-PAGYDSTDQ---------QRGIIIVKLRRGQELRLRAI 168
S + P + DS + + I+I KL GQE+ L A
Sbjct: 196 NGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAH 255
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
A KGIGK HAKWSP AT + PE+ + ++ E EE V+ P KVFDI+ + G
Sbjct: 256 AVKGIGKTHAKWSPVATAWYRMLPEVVLLKEF-EGKHAEEL---VKVCPKKVFDIE-DMG 310
Query: 229 QVYVVDAEAYTYDDEVIKKA--EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
Q A D + ++ + + V++ ++ FIFT+ESTG+ L A+
Sbjct: 311 QGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAV 370
Query: 287 EVLKQKLDAVRLSE 300
++L+ K + V +SE
Sbjct: 371 KILEDKCERV-ISE 383
>WB|WBGene00019275 [details] [associations]
symbol:rpac-40 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845 KO:K03027
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
EMBL:FO081035 RefSeq:NP_504166.2 ProteinModelPortal:Q9UAY9
SMR:Q9UAY9 STRING:Q9UAY9 PaxDb:Q9UAY9 EnsemblMetazoa:H43I07.2
GeneID:178823 KEGG:cel:CELE_H43I07.2 UCSC:H43I07.2 CTD:178823
WormBase:H43I07.2 InParanoid:Q9UAY9 NextBio:902702 Uniprot:Q9UAY9
Length = 366
Score = 194 (73.4 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 53/148 (35%), Positives = 84/148 (56%)
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I++ KLR GQE+ A KGIG+DHAK+SP AT ++ P I +N ++ + K
Sbjct: 218 ILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSV 277
Query: 212 WVESSPTKVFDIDPNTGQ-VYVV-DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFT 269
+ E V I+ + + VV DA T V + E + K +V++ + FIF+
Sbjct: 278 FSEG----VIAIEKKGAKRIAVVKDARKDTCSRNVFRH-EDLSK--VVQLGKNKQHFIFS 330
Query: 270 VESTGAIKASQLVLNAIEVLKQKLDAVR 297
VESTGA+K+S+LV+ A +V++ K ++R
Sbjct: 331 VESTGALKSSELVVEACKVMEIKCRSLR 358
Score = 151 (58.2 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 28/54 (51%), Positives = 43/54 (79%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 76
+F++ +A +ANALRRV+IAEVPT+A++ + + N+SV+ DE + HRLGL+PL
Sbjct: 69 EFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPL 122
>ASPGD|ASPL0000043748 [details] [associations]
symbol:AN2415 species:162425 "Emericella nidulans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEA] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 EMBL:BN001307
GO:GO:0006351 GO:GO:0003899 EMBL:AACD01000039 eggNOG:COG0202
HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:TVSRECL OrthoDB:EOG4VX5F0 RefSeq:XP_660019.1
ProteinModelPortal:Q5BAL5 STRING:Q5BAL5
EnsemblFungi:CADANIAT00009122 GeneID:2874697 KEGG:ani:AN2415.2
Uniprot:Q5BAL5
Length = 373
Score = 172 (65.6 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 52/141 (36%), Positives = 79/141 (56%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V + K A F L DAS+ANA RR+++AEVPT+AI+ V I N+SV+ DE +A R
Sbjct: 53 RVDFHQNKKFEASFSLIGLDASIANAFRRIVMAEVPTLAIEWVYIHNNTSVIQDEVLAQR 112
Query: 71 LGLIPLT-SERAMS-MR-FSRDCDACDGDGQ--CEFCSVEFHLRAKC--HSDQTLDVTS- 122
LGLIPL S ++ M+ +++ + G G ++ +V L +C + + + D T
Sbjct: 113 LGLIPLQGSVEGLNWMQWYNKGSEDEPGSGSDLADYNTVVLRLDVECTKNPNASRDETDP 172
Query: 123 KDLYSSDHSVVPVDFV-DPAG 142
+ LY + H V D V P G
Sbjct: 173 RKLYKNAH-VYAKDIVFHPVG 192
Score = 168 (64.2 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 52/157 (33%), Positives = 77/157 (49%)
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I++ KLR GQ++ L KGIG DHAK+SP AT T+ P I I ++ E+ +
Sbjct: 211 ILVAKLRPGQKIELEMHCIKGIGADHAKFSPVATATYRLMPVIQILRPIIG----EDAKK 266
Query: 212 WVESSPTKVFDIDPNT--------------GQVYVVDAEAY--TYDDEVIKKAEAMGKPG 255
+ + P V ++P T G++ V +A+ T E ++ E GK
Sbjct: 267 FAKCFPKGVIGLEPITAEDERQNAEYRGRGGELKAVVRDAFNDTVSRECLRHDEFKGKVK 326
Query: 256 LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
L I D FIF +ESTG + L L +++VLK K
Sbjct: 327 LGRI---RDHFIFNIESTGQFDSDVLFLESVKVLKLK 360
>UNIPROTKB|G4MQN0 [details] [associations]
symbol:MGG_09284 "DNA-directed RNA polymerase I and III
subunit RPAC1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:CM001231
GO:GO:0043581 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 RefSeq:XP_003709929.1
EnsemblFungi:MGG_09284T0 GeneID:2680208 KEGG:mgr:MGG_09284
Uniprot:G4MQN0
Length = 373
Score = 247 (92.0 bits), Expect = 5.6e-21, P = 5.6e-21
Identities = 75/243 (30%), Positives = 114/243 (46%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D + + ++ + A F L DAS+ANA RR+MIAE+P++AI+ V I N+SV
Sbjct: 45 DVNEFSQHLNIQFHQNDPSLASFSLIGVDASIANAFRRIMIAEIPSLAIERVFITNNTSV 104
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACD-G--DGQCEFCSVEFHLRAKC------ 112
+ DE +A RLGL+PL + +F + + G D +F +V L KC
Sbjct: 105 IQDEVLAQRLGLVPLKGSKEGLRKFMKPFKRTETGGFDNSFDFNTVNLRLNVKCTRNPDA 164
Query: 113 ---HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ-----QRGIIIVKLRRGQELR 164
+D ++Y+SD VP Y S D I+I KLR GQ +
Sbjct: 165 KPGENDPNKAYIKPNVYASDIEFVPAG--QQTDYFSGDGAIVPVNPDILIAKLRPGQGID 222
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L A G G DHAK+SP T ++ P I D+++ + + + + + P V +
Sbjct: 223 LEMHAHIGYGWDHAKFSPVCTASYRLMPII----DIVKPIVGADAEKFRDCFPDGVIRLQ 278
Query: 225 PNT 227
P T
Sbjct: 279 PVT 281
Score = 135 (52.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 57/191 (29%), Positives = 84/191 (43%)
Query: 124 DLYSSDHSVVPVDFVDPAGYDSTDQ-----QRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
++Y+SD VP Y S D I+I KLR GQ + L A G G DHA
Sbjct: 179 NVYASDIEFVPAG--QQTDYFSGDGAIVPVNPDILIAKLRPGQGIDLEMHAHIGYGWDHA 236
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY 231
K+SP T ++ P I D+++ + + + + + P V + P T G Y
Sbjct: 237 KFSPVCTASYRLMPII----DIVKPIVGADAEKFRDCFPDGVIRLQPVTAAEAKEKGSGY 292
Query: 232 ----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
V D T E ++ AE GK V++ + D FIF++ES G + +L
Sbjct: 293 EGHKGEMKAVVNDPMRDTVSRECLRHAEFEGK---VKLGRRRDHFIFSIESAGQWDSDEL 349
Query: 282 VLNAIEVLKQK 292
L +I LK K
Sbjct: 350 FLASIAELKSK 360
>UNIPROTKB|E7EQB9 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 HGNC:HGNC:20194
IPI:IPI00552946 ProteinModelPortal:E7EQB9 SMR:E7EQB9
Ensembl:ENST00000372344 ArrayExpress:E7EQB9 Bgee:E7EQB9
Uniprot:E7EQB9
Length = 296
Score = 206 (77.6 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 70/217 (32%), Positives = 111/217 (51%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D RF K V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N
Sbjct: 38 DAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNN 97
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEF-----CSVEFHLRAKC 112
+S++ DE +AHRLGLIP+ ++ R R D + + D +F C+ H AK
Sbjct: 98 TSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID-TLQFRLQVRCTRNPHA-AKD 155
Query: 113 HSDQTLDVTSKDLYSSDHSVVPV-DFVD--PAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + D P G I+I +LR GQE+ L
Sbjct: 156 SSDPNELYVNHKVYTRHMTWIPLGNQADLFPEG-TIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSL 206
KGIGK A+ + TF EI NE L + + L
Sbjct: 215 VKGIGKKVARVANPRLDTF--SREIFRNEKLKKVVRL 249
Score = 76 (31.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRL 298
T+ E+ + E + K +V + D +IF+VESTG + LV AI+VL K
Sbjct: 232 TFSREIFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLD 288
Query: 299 SEDTVEAD 306
D V+ D
Sbjct: 289 ELDAVQMD 296
>UNIPROTKB|F1LXY3 [details] [associations]
symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
IPI:IPI00948748 Ensembl:ENSRNOT00000067036 RGD:1309689
ArrayExpress:F1LXY3 Uniprot:F1LXY3
Length = 260
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 84/273 (30%), Positives = 132/273 (48%)
Query: 48 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEF 106
+A++ V + N+S++ DE +AHRLGLIP+ ++ R R + + +G E +++F
Sbjct: 1 VAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYR-----NPGEEEGT-EIDTLQF 54
Query: 107 HLRAKCHSDQTLDVTSKD---LYSSDHSVVP--VDFVDPAGYDSTDQQRG--------II 153
L+ +C + + S D LY + H V + +V P G + G I+
Sbjct: 55 RLQVRCTRNPSAAKDSSDPNELYVN-HKVYTRHMTWV-PLGNQADVFPEGTVRPVHDDIL 112
Query: 154 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWV 213
I +LR GQE+ L KGIGKDHAK+SP AT ++ P+I + E + E + EE
Sbjct: 113 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPV-EGEAAEELSQCF 171
Query: 214 ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVEST 273
V ++ V +A T+ E+ + E + K V + D +IF+VEST
Sbjct: 172 SPGVIAVQEVQGKK-VARVANARLDTFSREIFRH-EKLKKA--VRLARVRDHYIFSVEST 227
Query: 274 GAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
G + LV AI++L K D VE D
Sbjct: 228 GVLPPDVLVSEAIKILMGKCRRFLDELDAVEMD 260
>UNIPROTKB|Q57648 [details] [associations]
symbol:rpoD "DNA-directed RNA polymerase subunit D"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00320 InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 InterPro:IPR022842 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
EMBL:L77117 GenomeReviews:L77117_GR GO:GO:0003899 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 PIR:A64324
RefSeq:NP_247160.1 ProteinModelPortal:Q57648 IntAct:Q57648
GeneID:1451040 KEGG:mja:MJ_0192 KO:K03047 OMA:HAKWQPC
ProtClustDB:PRK14979 Uniprot:Q57648
Length = 191
Score = 142 (55.0 bits), Expect = 9.5e-17, Sum P(2) = 9.5e-17
Identities = 30/53 (56%), Positives = 40/53 (75%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 76
F L+ S +NA+RR+MI+EVPT AI+ V I NSS ++DE +AHRLGLIP+
Sbjct: 18 FSLK-APISFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPI 69
Score = 89 (36.4 bits), Expect = 9.5e-17, Sum P(2) = 9.5e-17
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 150 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA-ATVTFMYEPEIHINEDLMESLSLEE 208
+ I IVKL +GQ +++ A GIGK HAKW P A + + E+ + + EE
Sbjct: 107 KNIPIVKLGKGQRIQIECEAIPGIGKVHAKWQPCNAVYKQIADDEVEFFVETFGQMEAEE 166
Score = 59 (25.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 245 IKKAEAMGKP-GLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTV 303
I K A +P V +D F VE+ G ++A +++ A+++LK K ++ + +
Sbjct: 130 IGKVHAKWQPCNAVYKQIADDEVEFFVETFGQMEAEEILEEAVKILKNKAESFLQQLEMI 189
Query: 304 E 304
E
Sbjct: 190 E 190
>UNIPROTKB|D6RDJ3 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
OrthoDB:EOG47SSF0 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 HGNC:HGNC:20194 IPI:IPI00966384
ProteinModelPortal:D6RDJ3 SMR:D6RDJ3 Ensembl:ENST00000428025
ArrayExpress:D6RDJ3 Bgee:D6RDJ3 Uniprot:D6RDJ3
Length = 124
Score = 164 (62.8 bits), Expect = 8.9e-12, P = 8.9e-12
Identities = 35/97 (36%), Positives = 64/97 (65%)
Query: 17 LKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 76
+ ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHRLGLIP+
Sbjct: 1 MDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 60
Query: 77 TSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
++ R R + D +G E +++F L+ +C
Sbjct: 61 HADPRLFEYR-----NQGDEEGT-EIDTLQFRLQVRC 91
>UNIPROTKB|H0Y723 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 HGNC:HGNC:20194
ProteinModelPortal:H0Y723 Ensembl:ENST00000423780 Uniprot:H0Y723
Length = 140
Score = 162 (62.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 32/81 (39%), Positives = 55/81 (67%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D RF K V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N
Sbjct: 38 DAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNN 97
Query: 59 SSVLNDEFIAHRLGLIPLTSE 79
+S++ DE +AHRLGLIP+ ++
Sbjct: 98 TSIVQDEILAHRLGLIPIHAD 118
>UNIPROTKB|H3BRR2 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
InterPro:IPR009025 InterPro:IPR011261 Pfam:PF01193 GO:GO:0003677
GO:GO:0006351 EMBL:AC009052 GO:GO:0003899 SUPFAM:SSF55257
HGNC:HGNC:9189 ProteinModelPortal:H3BRR2 SMR:H3BRR2
Ensembl:ENST00000562599 Bgee:H3BRR2 Uniprot:H3BRR2
Length = 46
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTI 48
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP I
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPII 45
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 319 319 0.00084 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 602 (64 KB)
Total size of DFA: 211 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.13u 0.13s 26.26t Elapsed: 00:00:01
Total cpu time: 26.14u 0.13s 26.27t Elapsed: 00:00:01
Start: Fri May 10 19:28:21 2013 End: Fri May 10 19:28:22 2013