BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020983
(319 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255555327|ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 318
Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust.
Identities = 294/319 (92%), Positives = 309/319 (96%), Gaps = 1/319 (0%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+GASYQRFP++KIRELKDDY KFELRDTDASMANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQC++CSVEFHLRAKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TSKDLYSSDH+VVPVDF D +GYDS+ +QRGIIIVKLRRGQELRLRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSSGYDSS-EQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAATVTFMYEP+IHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT QV VVD EAYTY
Sbjct: 180 SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTY 239
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
D+EVIKKAE+MGKPGLV I AKEDSFIFTVESTGAIKASQLVLNAIE+LKQKLDAVRLSE
Sbjct: 240 DEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 299
Query: 301 DTVEADDQFGELGAHMRGG 319
DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318
>gi|147838054|emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 291/319 (91%), Positives = 307/319 (96%), Gaps = 1/319 (0%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+G SYQRFPK+KIRE+KDDYAKFELR+TDASMANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TSKDL SSDH+VVPVDF D +GYDS D+ +GIIIVKLRRGQELRLRAIARKGIGKDHAKW
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGYDSADK-KGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAATVTFMYEPEIHINEDLMESL+LEEK SWVESSPTKVFDID ++ QV V DAEAYTY
Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
DDEV+KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI+VLKQKLDAVRLSE
Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299
Query: 301 DTVEADDQFGELGAHMRGG 319
DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318
>gi|225428887|ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/319 (90%), Positives = 307/319 (96%), Gaps = 1/319 (0%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+G SYQRFPK+KIRE+KDDYAKFELR+TDASMANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCEFCSVEFHLRAKC +D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TSKDL SSDH+VVPVDF D +GYDS D+ +GIIIVKLRRGQELRLRAIARKGIGKDHAKW
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGYDSADK-KGIIIVKLRRGQELRLRAIARKGIGKDHAKW 179
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAATVTFMYEPEIHINEDLMESL+LEEK SWVESSPTKVFDID ++ QV V DAEAYTY
Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
DDEV+KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI+VLKQKLDAVRLSE
Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299
Query: 301 DTVEADDQFGELGAHMRGG 319
DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318
>gi|356576253|ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 320
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/317 (88%), Positives = 299/317 (94%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G SY R P+VKIRELKDDYAKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4 GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC +DQTLDVTS
Sbjct: 64 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123
Query: 123 KDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
KDLYSSD +V PVDF DP+ DS D RGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSP
Sbjct: 124 KDLYSSDPTVSPVDFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 183
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
AATVTFMYEPEIHINEDLME+L+LEEK+ WV+SSPT+VF+IDP T QV VVDAEAYTYDD
Sbjct: 184 AATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDD 243
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
EV+KKAEAMGKPGLVEI A++DSFIFTVESTGA+KASQLVLNAIE+LKQKLDAVRLSEDT
Sbjct: 244 EVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT 303
Query: 303 VEADDQFGELGAHMRGG 319
VEADDQFGELGAHMRGG
Sbjct: 304 VEADDQFGELGAHMRGG 320
>gi|356521566|ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 319
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/317 (88%), Positives = 299/317 (94%), Gaps = 1/317 (0%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G SY R P+VKIRELKDDYAKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 4 GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC +DQTLDVTS
Sbjct: 64 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123
Query: 123 KDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
KDLYSSD +V PVDF DP+ DS D RGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSP
Sbjct: 124 KDLYSSDPTVSPVDFSDPSATDS-DNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 182
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
AATVTFMYEPEIHINEDLME+L+LEEK+ WV+SSPT+VF+IDP T QV VVDAEAYTYDD
Sbjct: 183 AATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDD 242
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
EV+KKAEAMGKPGLVEI A++DSFIFTVESTGA+KASQLVLNAIE+LKQKLDAVRLSEDT
Sbjct: 243 EVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDT 302
Query: 303 VEADDQFGELGAHMRGG 319
VEADDQFGELGAHMRGG
Sbjct: 303 VEADDQFGELGAHMRGG 319
>gi|449442251|ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust.
Identities = 282/320 (88%), Positives = 300/320 (93%), Gaps = 1/320 (0%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+G+SYQRFPKVKIREL+DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTD-QQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
TSKDLYSSDH+VVPVDF D A +GIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
WSPAATVTFMYEP IHINEDLME+L+LEEK++WVES PT+VF++D T QV VVD EAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
YDDEVIKKAEAMGK GLV+I A+EDSFIFTVESTGAIKASQL+LNAI++LKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
Query: 300 EDTVEADDQFGELGAHMRGG 319
+DTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320
>gi|224105591|ref|XP_002313865.1| predicted protein [Populus trichocarpa]
gi|222850273|gb|EEE87820.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 280/321 (87%), Positives = 299/321 (93%), Gaps = 4/321 (1%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+ SYQRFPK+KIRE+KDDY KFELR+TDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEFHLRAKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAG----YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
TSKDLYSSDH+V+PVDF DP+ +D T+ QRGIIIVKLRRGQELRLRAIARKGIGKD
Sbjct: 121 TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKD 180
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAKWSPAATVTFMYEPEIHINEDLME+L+LEEK SW+ESSPTKVFDID T QV VVD E
Sbjct: 181 HAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPE 240
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
AYTYDDEVIKKAEAMGK GL++I AKEDSFIFTVESTGA+KASQLVLNAIE+LKQKLDAV
Sbjct: 241 AYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAV 300
Query: 297 RLSEDTVEADDQFGELGAHMR 317
RLS+DTVEADDQFGELG HMR
Sbjct: 301 RLSDDTVEADDQFGELGVHMR 321
>gi|357475219|ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation [Medicago truncatula]
gi|355508950|gb|AES90092.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
Length = 318
Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/320 (85%), Positives = 297/320 (92%), Gaps = 3/320 (0%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+GASY R P+VKIRELKDDY KFELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQ-RGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+SKDL SSDH+V PVD P G S + RGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLISSDHTVTPVDV--PGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAK 178
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
WSPAATVTFMYEP+IHINEDLMESL+LEEK+ WV+SSPT+VFDIDP T QV VVD EAY+
Sbjct: 179 WSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYS 238
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
YDDEVIKKAEAMGKPGL+EI AK+DSFIFTVESTGA+KASQL+LN+IE+LKQKLDAVRLS
Sbjct: 239 YDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLS 298
Query: 300 EDTVEADDQFGELGAHMRGG 319
EDTVEADDQFGELGAHMRGG
Sbjct: 299 EDTVEADDQFGELGAHMRGG 318
>gi|388505946|gb|AFK41039.1| unknown [Medicago truncatula]
Length = 318
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 273/320 (85%), Positives = 296/320 (92%), Gaps = 3/320 (0%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+GASY R P+VKIRELKDDY KFELRDTDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR K +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKRITDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQ-RGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+SKDL SSDH+V PVD P G S + RGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLISSDHTVTPVDV--PGGDASIESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAK 178
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
WSPAATVTFMYEP+IHINEDLMESL+LEEK+ WV+SSPT+VFDIDP T QV VVD EAY+
Sbjct: 179 WSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYS 238
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
YDDEVIKKAEAMGKPGL+EI AK+DSFIFTVESTGA+KASQL+LN+IE+LKQKLDAVRLS
Sbjct: 239 YDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLS 298
Query: 300 EDTVEADDQFGELGAHMRGG 319
EDTVEADDQFGELGAHMRGG
Sbjct: 299 EDTVEADDQFGELGAHMRGG 318
>gi|297832026|ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/320 (84%), Positives = 297/320 (92%), Gaps = 2/320 (0%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDGA+YQRFPK+ IRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L AKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDF-VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
TS+DLYS+D +V PVDF +D + DS+ +Q+GIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSASDSS-EQKGIIIVKLRRGQELKLRAIARKGIGKDHAK 179
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
WSPAATVTFMYEP+I INED+M++LS EEK +ESSPTKVF IDP T QV VVD EAYT
Sbjct: 180 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGIDPVTRQVVVVDPEAYT 239
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
YD+EVIKKAEAMGKPGL+EI+ K+DSFIFTVESTGA+KASQLVLNAI++LKQKLDAVRLS
Sbjct: 240 YDEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVRLS 299
Query: 300 EDTVEADDQFGELGAHMRGG 319
+DTVEADDQFGELGAHMRGG
Sbjct: 300 DDTVEADDQFGELGAHMRGG 319
>gi|15226523|ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-A;
Short=RNA polymerase II subunit 3-A; Short=RNA
polymerase II subunit B3-A; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
gi|4544370|gb|AAD22281.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|17381018|gb|AAL36321.1| putative DNA-directed RNA polymerase II third largest subunit
[Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
Length = 319
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/319 (82%), Positives = 292/319 (91%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDGA+YQRFPK+KIRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TS+DLYS+D +V PVDF + + + +GIIIVKLRRGQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAATVTFMYEP+I INED+M++LS EEK +ESSPTKVF +DP T QV VVD EAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
D+EVIKKAEAMGKPGL+EI K+DSFIFTVESTGA+KASQLVLNAI++LKQKLDAVRLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300
Query: 301 DTVEADDQFGELGAHMRGG 319
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>gi|21593370|gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 263/319 (82%), Positives = 291/319 (91%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDGA+YQRFPK+KIRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIAHRLGLI LTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TS+DLYS+D +V PVDF + + + +GIIIVKLRRGQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAATVTFMYEP+I INED+M++LS EEK +ESSPTKVF +DP T QV VVD EAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
D+EVIKKAEAMGKPGL+EI K+DSFIFTVESTGA+KASQLVLNAI++LKQKLDAVRLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300
Query: 301 DTVEADDQFGELGAHMRGG 319
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>gi|297832024|ref|XP_002883894.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329734|gb|EFH60153.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/320 (80%), Positives = 289/320 (90%), Gaps = 2/320 (0%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG +YQRFPK+ IRELKDDYAKFELR+TD SMANALRRVMI+EVPTIAIDLV IEVNSS
Sbjct: 1 MDGTTYQRFPKINIRELKDDYAKFELRETDVSMANALRRVMISEVPTIAIDLVNIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIA RLGLIPLTSERAMSMRF +DCDACDG+GQCEFCSVEF L AKC +DQTLDV
Sbjct: 61 VLNDEFIAQRLGLIPLTSERAMSMRFCQDCDACDGEGQCEFCSVEFPLSAKCVTDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDF-VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
TS+DLYS+D +V PVDF +D + DS+ +Q+GI IVKLRRGQEL+L+AIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSASDSS-EQKGITIVKLRRGQELKLKAIARKGIGKDHAK 179
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
WSPAATVTFMYEP+I INEDLM++L+ EEK +ESSPTKVF IDP T QV VVD EAYT
Sbjct: 180 WSPAATVTFMYEPDIIINEDLMDTLTDEEKIDLIESSPTKVFGIDPVTRQVVVVDPEAYT 239
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
YD+EVIKKAEAMGKPGL+EIY K DSF+FTVESTGA+KASQLVLNAI++LKQKLDA+ LS
Sbjct: 240 YDEEVIKKAEAMGKPGLIEIYPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAICLS 299
Query: 300 EDTVEADDQFGELGAHMRGG 319
+DTVEADDQFGEL AHMRGG
Sbjct: 300 DDTVEADDQFGELSAHMRGG 319
>gi|168026615|ref|XP_001765827.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683004|gb|EDQ69418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 254/323 (78%), Positives = 285/323 (88%), Gaps = 5/323 (1%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MD SYQRFP V+IR++KDD KFELRDTDAS+ANALRR+MIAEVPT+AIDLVEIE NSS
Sbjct: 1 MDNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEF+AHRLGLIP+ S+RAM MR SRDCDACDGDG+CE+CS+EFHL KC DQTLDV
Sbjct: 61 VLNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
TS DL SSD S++PVD D G++S D RGI+IVKLR+GQEL+LRAIARKGIGKD
Sbjct: 121 TSLDLVSSDPSIIPVDAAGRAADMGGFESNDT-RGILIVKLRKGQELKLRAIARKGIGKD 179
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAKWSPAATVTF YEPEIHINE LME+L+LEEKQ W++SSPTKVF++DP + QV VVD E
Sbjct: 180 HAKWSPAATVTFQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVDPE 239
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
AYTYD+EV+KKAEAMGKPGLVEIY+KEDSFIFTVESTGAIKASQ+ LNAIE+LK KLDAV
Sbjct: 240 AYTYDEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAV 299
Query: 297 RLSEDTVEADDQFGELGAHMRGG 319
RLS DT EADDQFGELGAHMRGG
Sbjct: 300 RLSFDTEEADDQFGELGAHMRGG 322
>gi|15226509|ref|NP_179142.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|12643753|sp|Q39212.2|RPB3B_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-B;
Short=RNA polymerase II subunit 3-B; Short=RNA
polymerase II subunit B3-B; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide B
gi|4544373|gb|AAD22284.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|28973621|gb|AAO64135.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|29824193|gb|AAP04057.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|110736768|dbj|BAF00345.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|330251303|gb|AEC06397.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 319
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/319 (76%), Positives = 281/319 (88%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG +YQRFP VKIRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD CEFCSVEF L AKC +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TS+DLYS+D +V PVDF + + + +GIII KLRRGQEL+L+A+ARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKW 180
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAATVT+MYEP+I INE++M +L+ EEK +ESSPTKVF IDP TGQV VVD EAYTY
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
D+EVIKKAEAMGKPGL+EI+ K DSF+FTVESTGA+KASQLVLNAI++LKQKLDA+RLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSD 300
Query: 301 DTVEADDQFGELGAHMRGG 319
+TVEADDQFGELGAHMR G
Sbjct: 301 NTVEADDQFGELGAHMREG 319
>gi|302803341|ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
gi|300149109|gb|EFJ15766.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
Length = 320
Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/318 (77%), Positives = 285/318 (89%), Gaps = 3/318 (0%)
Query: 4 ASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
ASYQRFP V+IR+LKDD+ KFELRDTDAS+ANALRRV+IAEVPT+AIDLVEIE NSSVLN
Sbjct: 3 ASYQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLN 62
Query: 64 DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
DEFIAHRLGLIPLTS++AM MR+SRDCD CDGDG+C++CS+EF L KC S++TLDVTS
Sbjct: 63 DEFIAHRLGLIPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCTSEETLDVTSH 122
Query: 124 DLYSSDHSVVPVDFV--DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
DL SSD VVPVD + DP ++ +Q++GI+IVKLR+GQEL+LRAIARKGI KDHAKWS
Sbjct: 123 DLQSSDSQVVPVDSIGHDP-DIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWS 181
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
PAATVTF YEP+IHINE+LME+LSLEEK+ WV+SSPTKVF+I+P T QV VVD EAYTYD
Sbjct: 182 PAATVTFQYEPDIHINENLMETLSLEEKREWVDSSPTKVFEINPETQQVEVVDPEAYTYD 241
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 301
DEVIKKAEAMGKPGLVEIY KEDSFIFTVESTGAIKA+Q+ LNAIE+L+ KLDAV+L+
Sbjct: 242 DEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAIEILRSKLDAVKLNFG 301
Query: 302 TVEADDQFGELGAHMRGG 319
+ EAD+QFG+LGAHMRGG
Sbjct: 302 SDEADEQFGDLGAHMRGG 319
>gi|302754380|ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
gi|300171553|gb|EFJ38153.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
Length = 320
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/318 (76%), Positives = 285/318 (89%), Gaps = 3/318 (0%)
Query: 4 ASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
ASYQRFP V+IR+LKDD+ KFELRDTDAS+ANALRRV+IAEVPT+AIDLVEIE NSSVLN
Sbjct: 3 ASYQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSVLN 62
Query: 64 DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
DEFIAHRLGLIPLTS++AM MR+SRDCD CDGDG+C++CS+EF L KC S++TLDVTS
Sbjct: 63 DEFIAHRLGLIPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCTSEETLDVTSH 122
Query: 124 DLYSSDHSVVPVDFV--DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
DL SSD VVPVD + DP ++ +Q++GI+IVKLR+GQEL+LRAIARKGI KDHAKWS
Sbjct: 123 DLQSSDSQVVPVDSIGHDP-DIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKWS 181
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
PAATVTF YEP+IHINE+LME+LS+EEK+ WV+SSPTKVF+I+P T QV V+D EAYTYD
Sbjct: 182 PAATVTFQYEPDIHINENLMETLSVEEKREWVDSSPTKVFEINPETQQVEVIDPEAYTYD 241
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 301
DEVIKKAEAMGKPGLVEIY KEDSFIFTVESTGAIKA+Q+ LNAIE+L+ KLDAV+L+
Sbjct: 242 DEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAIEILRSKLDAVKLNFG 301
Query: 302 TVEADDQFGELGAHMRGG 319
+ EAD+QFG+LGAHMRGG
Sbjct: 302 SDEADEQFGDLGAHMRGG 319
>gi|514320|gb|AAB03740.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
Length = 319
Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/319 (75%), Positives = 279/319 (87%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG +YQRFP VKIRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD CEFCSVEF L AKC +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TS+DLYS+D +V PVDF + + + +GIII KLRRGQEL+L+A+ARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKW 180
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAATVT+MYEP+I INE++M +L+ EEK +ESSPTKVF IDP TGQV VVD EAYTY
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
D+EVIKKAEAMGKPGL+EI+ K DSF+ +V STGA+KASQLVLNAI++LKQKLDA+RLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVLSVHSTGALKASQLVLNAIDILKQKLDAIRLSD 300
Query: 301 DTVEADDQFGELGAHMRGG 319
+TVEADDQFGELGAHMR G
Sbjct: 301 NTVEADDQFGELGAHMREG 319
>gi|115477954|ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|215692481|dbj|BAG87901.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697124|dbj|BAG91118.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768432|dbj|BAH00661.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201657|gb|EEC84084.1| hypothetical protein OsI_30378 [Oryza sativa Indica Group]
gi|222641056|gb|EEE69188.1| hypothetical protein OsJ_28369 [Oryza sativa Japonica Group]
Length = 330
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 252/328 (76%), Positives = 278/328 (84%), Gaps = 15/328 (4%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G SYQRFP+V+IRELKDDYAKFELRDTDASMANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVT 121
NDEFIAHRLGLIPLTS AM+MRFSRDCDACDGDG CE+CSVEFHL A+ SDQTL+VT
Sbjct: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 126
Query: 122 SKDLYSSDHSVVPVD----------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
S DL S+D V PVD +P + QRGI+IVKLRRGQELRLRAIARK
Sbjct: 127 SNDLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARK 186
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY 231
GIGKDHAKWSPAATVTFMYEPEI INE+LME+L+LEEK++ VESSPTKVF+IDPNT QV
Sbjct: 187 GIGKDHAKWSPAATVTFMYEPEIRINEELMETLTLEEKRNLVESSPTKVFNIDPNTQQVV 246
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V DAEAYTYDDEVIKKA+AMGKPGL+EI AKEDSFIFTVE+TGAI A +L++NAI VL+Q
Sbjct: 247 VEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQ 306
Query: 292 KLDAVRLSEDTVEADDQFGELGAHMRGG 319
KLDAVRL +D D GELGAH+ GG
Sbjct: 307 KLDAVRLQDD----DADLGELGAHLVGG 330
>gi|294464103|gb|ADE77570.1| unknown [Picea sitchensis]
Length = 330
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/328 (75%), Positives = 279/328 (85%), Gaps = 10/328 (3%)
Query: 1 MDG-----ASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEI 55
MDG +SYQRFP VKIRE+KDDY KFEL++TD S+ANALRRVMI EVPTIAIDLVEI
Sbjct: 1 MDGQGQMSSSYQRFPTVKIREMKDDYMKFELKNTDPSIANALRRVMIGEVPTIAIDLVEI 60
Query: 56 EVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD 115
E NSSVLNDEF+AHRLGLIPL SERAM MRFSRDCD CDGD QC +CSVEF L KC D
Sbjct: 61 ESNSSVLNDEFLAHRLGLIPLISERAMDMRFSRDCDTCDGDAQCHYCSVEFKLNVKCDGD 120
Query: 116 QTLDVTSKDLYSSDHSVVPVDFVDPAG----YDSTDQQRGIIIVKLRRGQELRLRAIARK 171
QTLDVTS DL SSD PV VD A +D++ +QRGIIIVKLRRGQELRLRAIARK
Sbjct: 121 QTLDVTSLDLVSSDMRENPVVAVDRAADMNVFDAS-EQRGIIIVKLRRGQELRLRAIARK 179
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY 231
GIGKDHAKWSPAATVTFMYEP+IHINE+LME+L+L+EK+ W+ES PTKVFDI P+T QV+
Sbjct: 180 GIGKDHAKWSPAATVTFMYEPDIHINENLMETLTLDEKREWIESCPTKVFDIHPDTQQVF 239
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
VVDAEAY+YDDEVIKKAEAMGKPGLV I AK+DSFIFT+ESTGA+KASQ++LNAI++LKQ
Sbjct: 240 VVDAEAYSYDDEVIKKAEAMGKPGLVSINAKDDSFIFTIESTGALKASQMLLNAIDILKQ 299
Query: 292 KLDAVRLSEDTVEADDQFGELGAHMRGG 319
KL+ VRLS +T E D QF +L HMRGG
Sbjct: 300 KLETVRLSPETEEDDAQFIDLEQHMRGG 327
>gi|357154558|ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Brachypodium distachyon]
Length = 330
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/325 (75%), Positives = 269/325 (82%), Gaps = 15/325 (4%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G SYQRFP+V+IRELKDDYAKFELRDTDASMANALRRVMIAEVPT+AIDLVEIE NSSVL
Sbjct: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIESNSSVL 66
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVT 121
NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CE CSVEFHL A+ +++TL+VT
Sbjct: 67 NDEFIAHRLGLIPLTSSGAMGMRFSRDCDACDGDGSCEHCSVEFHLAARATDANKTLEVT 126
Query: 122 SKDLYSSDHSVVPVD----------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
S DL S+D V PVD DP + RGI+IVKLRRGQELRLRAIARK
Sbjct: 127 SNDLRSTDPKVCPVDQAMAYQQAIGTADPYDTSTASDHRGILIVKLRRGQELRLRAIARK 186
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY 231
GI KDHAKWSPAATVTFMYEP+I INE+LME+L+LEEK SWVESSPTKVFDIDPNT QV
Sbjct: 187 GIAKDHAKWSPAATVTFMYEPDIRINEELMETLTLEEKTSWVESSPTKVFDIDPNTQQVV 246
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
VVD EAYTYDDEVIKKAEAMGKPGL+EI AKEDSF+FTVE+TGAI A +L++NAI VL+Q
Sbjct: 247 VVDREAYTYDDEVIKKAEAMGKPGLIEISAKEDSFVFTVETTGAITAYELIINAITVLRQ 306
Query: 292 KLDAVRLSEDTVEADDQFGELGAHM 316
KLDAVRL E+ D F L AH+
Sbjct: 307 KLDAVRLQEE----DGDFTGLDAHL 327
>gi|242048618|ref|XP_002462055.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
gi|241925432|gb|EER98576.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
Length = 328
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/327 (74%), Positives = 275/327 (84%), Gaps = 16/327 (4%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
GASYQRFP+V+IR+LKDDYAKFELRDTDASMANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 6 GASYQRFPRVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVT 121
NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CE+CSVEFHL A+ SDQTL+VT
Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 125
Query: 122 SKDLYSSDHSVVPVD----------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
S DL S D V PVD DP G +++++ RGI+IVKLRRGQELRLRAIARK
Sbjct: 126 SNDLRSMDPKVCPVDQARAYQQALGGTDPFGANTSNENRGILIVKLRRGQELRLRAIARK 185
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY 231
GIGKDHAKWSPAATVTFMYEP+I INE+LME+L++EE++ +ESSPTKVF +D + QV
Sbjct: 186 GIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERRRLIESSPTKVFKLD-SANQVV 244
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V +AEAYTYDDEVIK AEA+GKPGLVEI AKEDSFIFTVE+TGAI A +L++NAI VL+Q
Sbjct: 245 VDNAEAYTYDDEVIKHAEALGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITVLRQ 304
Query: 292 KLDAVRLSEDTVEADDQFGELGAHMRG 318
KLDAVRL +D D GELGAH+ G
Sbjct: 305 KLDAVRLQDD----DGDLGELGAHLGG 327
>gi|226529628|ref|NP_001149261.1| LOC100282883 [Zea mays]
gi|195625852|gb|ACG34756.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Zea mays]
gi|223974247|gb|ACN31311.1| unknown [Zea mays]
gi|414588991|tpg|DAA39562.1| TPA: DNA-directed RNA polymerase II polypeptide A [Zea mays]
Length = 328
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/327 (74%), Positives = 273/327 (83%), Gaps = 16/327 (4%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G SYQRFP+V+IRELKDDYAKFELRDTDASMANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 6 GTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVT 121
NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CE+CSVEFHL SDQTL+VT
Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVT 125
Query: 122 SKDLYSSDHSVVPVD----------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
S DL S D V PVD DP G +++++ RGI+IVKLRRGQELRLRAIARK
Sbjct: 126 SNDLRSMDPKVCPVDQARAYQHALGGTDPFGANASNENRGILIVKLRRGQELRLRAIARK 185
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY 231
GIGKDHAKWSPAATVTFMYEP+I INE+LME+L++EE+ S +ESSPTKVF++D + QV
Sbjct: 186 GIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELD-SANQVV 244
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V +AEAYTYDDEVIK AEA+GKPGLVEI AKEDSF+FTVE+TGAI A +L++NAI VL+Q
Sbjct: 245 VKNAEAYTYDDEVIKHAEAIGKPGLVEITAKEDSFVFTVETTGAITAYELIMNAITVLRQ 304
Query: 292 KLDAVRLSEDTVEADDQFGELGAHMRG 318
KLDAVRL +D D GELGAH+ G
Sbjct: 305 KLDAVRLQDD----DGDLGELGAHLGG 327
>gi|388522223|gb|AFK49173.1| unknown [Lotus japonicus]
Length = 237
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/238 (84%), Positives = 217/238 (91%), Gaps = 1/238 (0%)
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
MSMRFSRDCDACDGDGQCEFCSVEFHLR KC +D+TLDVTSKDLYSSDH+VVPVDF
Sbjct: 1 MSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDT 60
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
DS +GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV+FMYEPEIHIN+DLM
Sbjct: 61 SSDSA-VNKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHINDDLM 119
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYA 261
E+L+L+EK+ WVES PT VFDID NT +VYV +AE Y+YDDEVIKKAEAMGKPGLVEI A
Sbjct: 120 ETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITA 179
Query: 262 KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 319
K+DSFIF VE+TGA+KASQLVLNAIE+LKQKLDAVRLSEDTVEADDQFGELGAHMRGG
Sbjct: 180 KQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 237
>gi|296090458|emb|CBI40277.3| unnamed protein product [Vitis vinifera]
Length = 206
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/206 (89%), Positives = 196/206 (95%), Gaps = 1/206 (0%)
Query: 114 SDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
+D+TLDVTSKDL SSDH+VVPVDF D +GYDS D+ +GIIIVKLRRGQELRLRAIARKGI
Sbjct: 2 TDETLDVTSKDLISSDHTVVPVDFSDSSGYDSADK-KGIIIVKLRRGQELRLRAIARKGI 60
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
GKDHAKWSPAATVTFMYEPEIHINEDLMESL+LEEK SWVESSPTKVFDID ++ QV V
Sbjct: 61 GKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVA 120
Query: 234 DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DAEAYTYDDEV+KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI+VLKQKL
Sbjct: 121 DAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKL 180
Query: 294 DAVRLSEDTVEADDQFGELGAHMRGG 319
DAVRLSEDTVEADDQFGELGAHMRGG
Sbjct: 181 DAVRLSEDTVEADDQFGELGAHMRGG 206
>gi|414588990|tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea mays]
Length = 260
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/233 (76%), Positives = 198/233 (84%), Gaps = 11/233 (4%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G SYQRFP+V+IRELKDDYAKFELRDTDASMANALRRVMIAEVPT+AIDLVEIEVNSSVL
Sbjct: 6 GTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVT 121
NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CE+CSVEFHL SDQTL+VT
Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVT 125
Query: 122 SKDLYSSDHSVVPVD----------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
S DL S D V PVD DP G +++++ RGI+IVKLRRGQELRLRAIARK
Sbjct: 126 SNDLRSMDPKVCPVDQARAYQHALGGTDPFGANASNENRGILIVKLRRGQELRLRAIARK 185
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
GIGKDHAKWSPAATVTFMYEP+I INE+LME+L++EE+ S +ESSPTKVF++D
Sbjct: 186 GIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELD 238
>gi|145328718|ref|NP_001077894.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|330251304|gb|AEC06398.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 235
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 171/230 (74%), Positives = 197/230 (85%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG +YQRFP VKIRELKDDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD CEFCSVEF L AKC +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TS+DLYS+D +V PVDF + + + +GIII KLRRGQEL+L+A+ARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKW 180
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
SPAATVT+MYEP+I INE++M +L+ EEK +ESSPTKVF IDP TGQV
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230
>gi|71535027|gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subunit [Medicago
sativa]
Length = 184
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 160/186 (86%), Positives = 169/186 (90%), Gaps = 3/186 (1%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y R P+VKIRELKDDY KFELRDTDAS+ANALRRVMI+EVPTIAIDLVEIEVNSSVLNDE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL 125
FIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC +DQTLDV+SKDL
Sbjct: 61 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDL 120
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQ-RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
SSDH+V PVD P G S + RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA
Sbjct: 121 ISSDHTVTPVDV--PGGDASVESDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 178
Query: 185 TVTFMY 190
TVTFMY
Sbjct: 179 TVTFMY 184
>gi|168029877|ref|XP_001767451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681347|gb|EDQ67775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/316 (53%), Positives = 218/316 (68%), Gaps = 19/316 (6%)
Query: 3 GASYQRFPKVKIRELKD--DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
G SY R P V I E + +F+L +TD SMAN+LRR M+ EVPT+A DLVEIE+NSS
Sbjct: 17 GVSYHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSS 76
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL DEFIAHRLGLIPLTS+RAM M F +CD+C GD C+ C+VEF L K D+ DV
Sbjct: 77 VLTDEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIKDV 136
Query: 121 TSKDLYSSDHSVVPVDF-VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
T +DL SS+ +VVPV+ VD G + + I I KL +GQE+ LRA+A+KG+G HAK
Sbjct: 137 TQRDLKSSNDAVVPVEIDVDKQGV-LEECKMDICIAKLYKGQEITLRALAKKGMGSLHAK 195
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESS---P-----------TKVFDIDP 225
WSP ATVTF +EPEI+INE+ ME+L+L EKQ+WVESS P KVF +DP
Sbjct: 196 WSPVATVTFHHEPEIYINEEKMEALTLAEKQNWVESSLDLPQNQSFPVPATLVKVFKLDP 255
Query: 226 NTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNA 285
T +V VV AYT E+ + EA G LVEI ++DSFIF+VESTGAI +++ ++A
Sbjct: 256 ATSKVMVVSPGAYT-SQELQRNVEAAGMAELVEIAWRDDSFIFSVESTGAIAPAKICVDA 314
Query: 286 IEVLKQKLDAVRLSED 301
+ +LK+KL A+R++ED
Sbjct: 315 VNILKKKLLALRIAED 330
>gi|384245015|gb|EIE18511.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 303
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/289 (54%), Positives = 205/289 (70%), Gaps = 10/289 (3%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
+R P+V+IR+L+DD+ +F L DTD S+ANALRR+M+ EVPTIAIDLVEIE N++VLNDEF
Sbjct: 8 RRVPQVQIRDLRDDFCEFVLSDTDPSVANALRRIMLVEVPTIAIDLVEIEENTTVLNDEF 67
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL- 125
IAHRLGLIPL S M+ + G+ +F VE L KC S+ T++VTS DL
Sbjct: 68 IAHRLGLIPLVSSAVGGMK-----GVFEDAGEADFLDVEMTLNVKCTSEDTMEVTSNDLQ 122
Query: 126 YSSDHS-VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
++H V PV +V P GYD + RGI++VK+R+ QELRL+AIARKGIGKDHAKW P A
Sbjct: 123 LDANHPDVRPVGYV-PGGYDP--ENRGILLVKMRKNQELRLKAIARKGIGKDHAKWIPVA 179
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
TV+F Y PEI IN LM++L+ E+K+ WV+++P VF + T QV + D E Y YD E
Sbjct: 180 TVSFQYMPEITINRALMDTLTEEQKEDWVKATPNPVFRYNNITKQVELDDVEQYRYDGEA 239
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
KAE +GKPGLV I ++D FIF VE TG ++A +VL A+EVL +KL
Sbjct: 240 EAKAEELGKPGLVTIKERQDMFIFRVEGTGVLRAEDVVLTALEVLMRKL 288
>gi|255082502|ref|XP_002504237.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
gi|226519505|gb|ACO65495.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
Length = 331
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 165/324 (50%), Positives = 209/324 (64%), Gaps = 23/324 (7%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
DG QR P + ++E+ +D KF L TD S+ANALRRV+IAEVPTIAIDLVE+ NSS
Sbjct: 5 DGDPRQRRPNIVVQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSC 64
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
L DEFIAHRLGLIPL S +A M F D GD + V LR KC SDQT DVT
Sbjct: 65 LCDEFIAHRLGLIPLVSHKAADMEFPYDYA---GDDET-VTDVPIELRVKCVSDQTEDVT 120
Query: 122 SKDL-----YSSDHSVVPVDFVD-------------PA-GYDSTDQQRGIIIVKLRRGQE 162
S DL Y+ +V PV + PA G + + I+I+KLR+ QE
Sbjct: 121 SNDLLINGDYTQYDTVKPVHYRPSGRAFGDATASGAPADGSQADGDKHPILILKLRKNQE 180
Query: 163 LRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFD 222
+ +R +ARKG+G+DHAKW P AT + +EPEI INEDLM +L+ EEK +VESSPT VF
Sbjct: 181 INMRCVARKGVGRDHAKWQPVATAVYRFEPEITINEDLMATLTEEEKIKFVESSPTPVFR 240
Query: 223 IDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
+ T +V V E+YTYD E +K AE MGKPGLV+I AKED+F+FTVESTGA+ +V
Sbjct: 241 YNDQTRKVEVNMPESYTYDGECLKWAEDMGKPGLVDIRAKEDTFLFTVESTGALPPETIV 300
Query: 283 LNAIEVLKQKLDAVRLSEDTVEAD 306
LNA++VL KL+ + D V+++
Sbjct: 301 LNALKVLDTKLEMTKSELDIVKSE 324
>gi|330805244|ref|XP_003290595.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325079268|gb|EGC32876.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 303
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 151/303 (49%), Positives = 208/303 (68%), Gaps = 16/303 (5%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P++ I E+K++ F L +TD S+ANALRRVMIAEVPT++IDLVE E N+SVL DEFI
Sbjct: 10 RQPELDILEIKNESIVFTLSNTDISVANALRRVMIAEVPTMSIDLVEFEANNSVLCDEFI 69
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY- 126
AHRLGLIPL S+ ++RDC + +C+ CSVEF L KC + + +DVTS DL
Sbjct: 70 AHRLGLIPLVSDNVDKFNYTRDCSCSE---RCDQCSVEFKLNVKCSNQRPIDVTSSDLIV 126
Query: 127 --SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
++++SV+PV +T++ I IVKLR+GQELRLRAIA+KG+GK+HAKWSP+
Sbjct: 127 VSNNNNSVIPV------SSQTTERTDEIPIVKLRQGQELRLRAIAKKGVGKEHAKWSPSC 180
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDP-NTGQVYVVDAEAYT-YDD 242
T+ ++P + IN++ M+ LS ++K+ WV S PTKVF P N Q VD Y
Sbjct: 181 IATYQFQPIVTINQNRMDELSDKQKEEWVGSCPTKVFGYSPHNQSQPVSVDEPMRCMYCL 240
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV--RLSE 300
E KKAEA GKP L+ I K+D FIFTVES+G++K +VL+AI+++K KL+++ +LSE
Sbjct: 241 ECKKKAEAFGKPDLISIEQKQDKFIFTVESSGSLKPEDIVLSAIQIIKAKLNSIQTQLSE 300
Query: 301 DTV 303
+
Sbjct: 301 GMI 303
>gi|328868426|gb|EGG16804.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 296
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 140/286 (48%), Positives = 197/286 (68%), Gaps = 7/286 (2%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P ++I ELK+D F L +TD S+ANALRR+MIAEVPT+AIDLVE + N+SVL DEFI
Sbjct: 7 RMPNLEILELKNDSITFVLSNTDISVANALRRIMIAEVPTMAIDLVEFQTNTSVLCDEFI 66
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
AHRLGLIPLTS + S ++R+C + +C CSVEF+L KC D+ L+VTS DL S
Sbjct: 67 AHRLGLIPLTSHKVESFNYTRECSCTE---RCTECSVEFNLNVKCL-DRALEVTSSDLQS 122
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
+ +V PV D Y +T I IV+LR+GQE++L+AIA+KG+GK+HAKW P T
Sbjct: 123 QNDNVFPVSASDNV-YGNTSG--AIPIVRLRKGQEVKLKAIAKKGVGKEHAKWIPTCIAT 179
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
+ ++P+I +N++ + LS +K W+ S PT VF +PN+ Q D + E +KK
Sbjct: 180 YQFQPKIVVNQNRFDELSDRQKDEWISSCPTNVFKYNPNSMQQVTTDDLKCMFCQECVKK 239
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+EA+GKP LV + K+D FIFTVE++GA++ ++VL I+++K+KL
Sbjct: 240 SEALGKPDLVSVEQKQDRFIFTVETSGALRPEEIVLAGIQIIKEKL 285
>gi|303281664|ref|XP_003060124.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458779|gb|EEH56076.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 333
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 158/321 (49%), Positives = 210/321 (65%), Gaps = 28/321 (8%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
QR P + ++EL + +F L TD S+ANALRRV+IAEVPT+AIDLV++ N+S L DEF
Sbjct: 9 QRSPSIVVQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEF 68
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAK-CHSDQTLDVTSKDL 125
IAHRLGLIPL SE+A+ M F D GD + V F L C S +T+DVTS DL
Sbjct: 69 IAHRLGLIPLLSEKAVEMEFPYDYA---GDDE-SVTDVHFELNTGICASAETVDVTSNDL 124
Query: 126 YSSDHSVVPVDF------------------VDPAGYDSTDQQRGIIIVKLRRGQELRLRA 167
D V PV++ G D G++IVKLRRGQ++ +R
Sbjct: 125 VCYDPRVAPVNYHPGESIKGKGGAMEFEAQAAARGPDDGPDIPGVVIVKLRRGQQINMRC 184
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT 227
+ARKG+G+DHAKW P AT T+ +EPEI INE+LM +L+ EEK ++VESSPT +F D T
Sbjct: 185 VARKGVGRDHAKWQPVATATYRFEPEITINEELMATLTEEEKMAFVESSPTALFRYDEAT 244
Query: 228 GQVYVVD----AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
+V VVD A +Y YD E +KKAE +GKPGLV+I AKED+F FTVESTGA++ ++V+
Sbjct: 245 RRV-VVDAPDQARSYGYDGECLKKAEELGKPGLVDIRAKEDAFHFTVESTGALRPEEIVV 303
Query: 284 NAIEVLKQKLDAVRLSEDTVE 304
NA++VL++K++ R D +E
Sbjct: 304 NALKVLERKMEVTRGELDILE 324
>gi|66801649|ref|XP_629750.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74851108|sp|Q54DH7.1|RPB3_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|60463138|gb|EAL61332.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 302
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/292 (49%), Positives = 202/292 (69%), Gaps = 9/292 (3%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P+++I E+K+D F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
AHRLGLIPL S+ ++RDC D +C+ CSVE L KC ++ DVTS DL S
Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 126
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
+ +V+PV + S++ ++ I IVKLRRGQE++LRAIA+KG+GK+HAKWSP+ T
Sbjct: 127 QNSAVIPVS----SQVTSSNSEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVAT 182
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN--TGQVYVVDAEAYTYDDEVI 245
+ ++P I +N++ ++ L+ ++K+ WV S PTKV+ P+ T QV + D Y E
Sbjct: 183 YQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLECK 242
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
KKAE+ GKP LV + K+D FIFTVES+GA+K +VL AI+++K+KL ++
Sbjct: 243 KKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294
>gi|281211628|gb|EFA85790.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 295
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/298 (48%), Positives = 201/298 (67%), Gaps = 12/298 (4%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P ++I E+K+D F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFI
Sbjct: 7 RHPNLEILEIKNDSITFILSNTDISVANALRRVMIAEVPTMCIDLVEFEANNSVLVDEFI 66
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
AHRLGLIPLTS + ++RDC + +C+ CSVEF L A+C +D + VTS DL S
Sbjct: 67 AHRLGLIPLTSHKVDQFNYTRDCSCAE---RCDNCSVEFKLNARC-NDHSYSVTSLDLLS 122
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
+ V+PV D G T I IVKL RGQE++LRAIA+KG+GK+HAKWSPA T
Sbjct: 123 QNDHVIPVGSSD--GRPDT----VIPIVKLHRGQEVKLRAIAKKGVGKEHAKWSPACVAT 176
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-GQVYVVDAEAYTYDDEVIK 246
+ ++P+I IN++ M+ L+ +K+ WV+S P V+ + + QV + D + E K
Sbjct: 177 YQFQPKIVINQNRMDELTDRQKEEWVQSCPANVYQFNAHQRQQVTIEDQMRCMFCMECKK 236
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS-EDTV 303
KA+++GKP LV I K D FIF VE+ G++K ++VL+AI+++K+KL ++ +DTV
Sbjct: 237 KADSLGKPDLVSIEQKTDKFIFNVETNGSLKPEEVVLSAIQIIKRKLTDIQTQLQDTV 294
>gi|412990464|emb|CCO19782.1| DNA-directed RNA polymerase II subunit RPB3 [Bathycoccus prasinos]
Length = 298
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 194/296 (65%), Gaps = 6/296 (2%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK+ IR+ D+ KF L +T S+ANA+RRV IAEVPT+AIDLVEI NSSVL DEFIAH
Sbjct: 5 PKIIIRDATSDFVKFTLSNTCLSVANAVRRVAIAEVPTVAIDLVEIVENSSVLCDEFIAH 64
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+PL S+ A + G+ + + +V +L KC SD TLDVT+ L +D
Sbjct: 65 RLGLVPLVSDSASDYMLPSEYV---GEDEAKI-NVHLNLAVKCSSDHTLDVTTNHLICAD 120
Query: 130 HSVVPVDFVDPAGYDSTDQQR-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+PV+F P DS Q+ G++IVKLR+ QEL ++ IARKGIGKDHAKWSP AT +
Sbjct: 121 AKFLPVNF-HPIDSDSNKQEPPGVLIVKLRKNQELVVKCIARKGIGKDHAKWSPVATAVY 179
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
EPE+++NE+L L+ EK V S P + ++ +T + + ++Y YDDE IKKA
Sbjct: 180 KCEPELYLNEELTNKLTDREKLELVNSCPIPILRLNQHTKSLEIERNDSYAYDDECIKKA 239
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
E GK +VEI AKED+F F +E TG ++ ++VL+ ++L KLD++++ + +E
Sbjct: 240 EEFGKGKIVEIKAKEDTFNFFLEGTGVLRPGRIVLHTFKILLSKLDSIKVGLELIE 295
>gi|325182041|emb|CCA16494.1| DNAdirected RNA polymerase II 36 kDa polypeptide A putative [Albugo
laibachii Nc14]
Length = 319
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 137/297 (46%), Positives = 193/297 (64%), Gaps = 10/297 (3%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
+FPKV+I +L+DD+ KFEL +TDAS+ANALRRVMIAEVPT+AIDLV IEVN+SV+ DEF+
Sbjct: 5 QFPKVEILDLRDDFIKFELFETDASVANALRRVMIAEVPTLAIDLVTIEVNTSVMTDEFL 64
Query: 68 AHRLGLIPLTSE---RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
AHRLG+IPL + A RF D CD + C CSVEF L + L VTS
Sbjct: 65 AHRLGMIPLLFDGGLEAFRQRFVYSQD-CDCEEHCPNCSVEFQLDVRAEQGM-LSVTSDS 122
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L S D + PV+F +++T Q G+II KL GQ +RL AIA+ GIGK+HAKW+P A
Sbjct: 123 LKSVDPYIRPVNFSSEEEFNNT-QDTGVIIAKLGPGQHIRLSAIAKLGIGKEHAKWAPVA 181
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
TFMYEP+I +N+ ++ + + E+K +S PT+V++ D N Q + + Y DE
Sbjct: 182 VATFMYEPKITLNQAILSTYTPEQKAELYKSCPTEVYETDENYEQFTIANHMRCMYCDEC 241
Query: 245 IKKAEAMG-KP---GLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+K + P V I +ED FIF+VE+TG +K ++V+ A++++++KL ++
Sbjct: 242 VKVVNSYKDNPEDDAAVTIQMQEDRFIFSVETTGQLKPEEVVICALDIIREKLSYLK 298
>gi|307108317|gb|EFN56557.1| hypothetical protein CHLNCDRAFT_144215 [Chlorella variabilis]
Length = 283
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 178/293 (60%), Gaps = 35/293 (11%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M + +R P+V++R+L DDY +F L+ TD SMANALRR+++ EVPTIAI+LVE E N++
Sbjct: 1 MATKTTKREPQVELRKLTDDYCEFVLKGTDVSMANALRRIILVEVPTIAIELVEFEANTT 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VLNDEF+AHRLGLIPL S R M+ + + R + H
Sbjct: 61 VLNDEFLAHRLGLIPLVSTRVHDMKSIYEAQVG-----------AWVARRRRH------- 102
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
++ P GY + +GI++VK+RR QEL+LRA+ARKG GKDHAKW
Sbjct: 103 ----------------YIHPVGYHDR-EDKGILLVKMRRNQELKLRAVARKGTGKDHAKW 145
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
P AT + + PEI IN LM++L+ ++K+ W + P K F ++ T +V V + E Y Y
Sbjct: 146 MPVATCVYQFMPEITINHALMDTLTDDQKEEWCAADPRKTFRLNKLTHRVEVTNPELYQY 205
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
D EV+ KAE MGKPGLV I K+D+FIF VE TG + +VL A EVL K+
Sbjct: 206 DGEVLAKAEEMGKPGLVAIKQKQDTFIFRVEGTGVLPPQDIVLTACEVLASKI 258
>gi|145342475|ref|XP_001416207.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
gi|144576432|gb|ABO94500.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
Length = 318
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 184/309 (59%), Gaps = 31/309 (10%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V + L+D+ F+L+ D S+ANALRR+MIA+VPT++IDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70
Query: 72 GLIPLTSERAMSM----RFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
GLIPL S +A + ++ D D V L +C SDQT DVTS DL S
Sbjct: 71 GLIPLDSTKASELVKPYEYTGDDDTA--------TDVHLELNVRCQSDQTRDVTSDDLIS 122
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
D V PV F G + + GI+I KLR+ Q+L L+ IARKG GKDHAKWSP AT
Sbjct: 123 HDERVKPVSFGGTGG--GSAKSGGILIAKLRKNQQLSLKCIARKGTGKDHAKWSPVATAV 180
Query: 188 FMYEPEIHINEDLMESLSLE-----------------EKQSWVESSPTKVFDIDPNTGQV 230
F Y P I IN L+ SL+ + EK + VES P+K+F D +T
Sbjct: 181 FKYTPLIDINHGLLNSLNGKSQTRILYHNFKRHNAGPEKAAIVESDPSKMFKYDADTDTF 240
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
+ E+ TYD EV+KK +GKPGL+++ D F F VESTG +K ++VL A+ +L+
Sbjct: 241 TLTSPESCTYDGEVMKKVNELGKPGLIDVRPGLDCFTFIVESTGVLKVEEVVLQAVHILQ 300
Query: 291 QKLDAVRLS 299
KLD + +S
Sbjct: 301 SKLDTIGVS 309
>gi|308800116|ref|XP_003074839.1| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
gi|119358805|emb|CAL52099.2| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
Length = 301
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 189/301 (62%), Gaps = 16/301 (5%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V + L+D F L+ D S+ANALRRVMIA+VPT+AIDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRL 70
Query: 72 GLIPLTSERAMSM-----RFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY 126
GLIPL+S++ + D A D V L +C ++Q +DVTS+D+
Sbjct: 71 GLIPLSSKKVSELFKPYEYMGEDDSATD---------VHLELNVRCLTEQAMDVTSEDMV 121
Query: 127 SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
S D V P+ F + GI+IVKLR Q+L L+ IARKG GKDHAKWSP AT
Sbjct: 122 SYDERVKPITF--QGTVSDAAKPGGILIVKLRNKQQLLLKCIARKGTGKDHAKWSPVATA 179
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
F ++P +H+N++L+++LS +K++ VES P+++F D + + + + T+D E++K
Sbjct: 180 VFKHDPVVHVNQELLKTLSGSDKRAIVESDPSQMFKYDADLDTISLTSTGSCTFDGEIVK 239
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
K MGK GL++I DSF F VESTG + A ++VL A+ +L+ KLD V D +E++
Sbjct: 240 KVNEMGKHGLIDIRPCFDSFTFHVESTGVLDAEEIVLQAVHILQTKLDTVGGELDMIESE 299
Query: 307 D 307
+
Sbjct: 300 N 300
>gi|159489602|ref|XP_001702786.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158280808|gb|EDP06565.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 275
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 126/277 (45%), Positives = 172/277 (62%), Gaps = 14/277 (5%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P + +R L+ DY FEL++TD S ANALRR M+AEVPTIAIDLVE+E N++VLNDEF+
Sbjct: 11 RKPTISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEFL 70
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL-- 125
AHRLGLIPL S A+ + + G + F L C + +DVTS DL
Sbjct: 71 AHRLGLIPLVSRNAVYWK-----RPFEWSGDNDIIETAFSLDVMCEQEGVMDVTSNDLVP 125
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
D VVPV++ + ++ I+I KLRRGQ L+L A ARKGIGKDHAK+ P AT
Sbjct: 126 LEPDAGVVPVNY-------HSATEKPIVICKLRRGQHLKLVARARKGIGKDHAKFIPVAT 178
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
F Y+ +I ++ M ++ +EKQ++V S P+K F +P T + V + E+Y YD+E +
Sbjct: 179 AVFQYKAQITLSASAMADMTDDEKQAFVHSDPSKTFKFNPITRMIEVENEESYMYDEECV 238
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
KA +G+P LV I +D FIF VE TG ++ +V
Sbjct: 239 VKARELGRPDLVTIRQVQDHFIFRVEGTGVLEVKSIV 275
>gi|302833623|ref|XP_002948375.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
gi|300266595|gb|EFJ50782.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
Length = 272
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 170/265 (64%), Gaps = 22/265 (8%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
FEL++TD S ANALRRVMIAEVPTIAIDLVE+E N++VLNDEF+AHRLGL+PL S A++
Sbjct: 3 FELKNTDVSSANALRRVMIAEVPTIAIDLVEMENNTTVLNDEFLAHRLGLLPLVSTEAVA 62
Query: 84 MR----FSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL--YSSDHSVVPVDF 137
+ +S D D + F L C D +DVTS DL + +H V PV++
Sbjct: 63 WKRPFEWSNDADMIE---------TAFSLDVTCTVDGVMDVTSNDLVPLNPEHGVFPVNY 113
Query: 138 VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
+P ++ I+I K+RRGQ+L+L A ARKGIGKDHAK+ P AT F Y+P I ++
Sbjct: 114 QNP-------DEKPIVICKMRRGQQLKLVARARKGIGKDHAKFIPVATAVFQYKPRIVLS 166
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLV 257
M ++ EEKQ +V S P+K F +P T + V + EAY YD+E + KA +G+P LV
Sbjct: 167 HSAMAEMTDEEKQIFVHSDPSKTFKFNPITRMIEVENEEAYMYDEECLVKARELGRPDLV 226
Query: 258 EIYAKEDSFIFTVESTGAIKASQLV 282
I +D FIF VE TG ++ + +V
Sbjct: 227 TITQLQDHFIFRVEGTGVLRVADIV 251
>gi|219121575|ref|XP_002181139.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407125|gb|EEC47062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 320
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 189/307 (61%), Gaps = 19/307 (6%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
YQRFP+V+I ++ KF L ++D S+AN LRR+MIAEVPT+AIDLVE NS+VLNDE
Sbjct: 3 YQRFPRVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDE 62
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDA------CDGDGQCEFCSVEFHL----RAKCHSD 115
+IAHR+GLIP+ + A S++ S DA C C CSVEF L + D
Sbjct: 63 YIAHRMGLIPVRYQPAESLKGSDCSDAFLPHRECVCYEHCMRCSVEFELDITYKVTGEED 122
Query: 116 --QTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
L VTSKDL S++ V P F+ D Q G+ IVKL GQ L+L+AIAR GI
Sbjct: 123 VLAPLTVTSKDLVSNNELVQPAHFLSQDEQDEA-QDEGVAIVKLGPGQRLKLKAIARMGI 181
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
K+HAKW P A T+ + PEIHIN++ M +L+LE+KQ V++ P ++ ++D TG + V
Sbjct: 182 SKEHAKWCPVAVATYRFWPEIHINDEQMATLTLEQKQELVDTCPDRILELDEVTGDIRAV 241
Query: 234 DA--EAYTYDDEVIKKAEAMGKPG----LVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
D + TY +++ AM K V + +D FIF VE+TGA+ A +++L+AI
Sbjct: 242 DNAWDICTYTEDLKFAQAAMKKRPEDDDFVTVTQSKDRFIFNVETTGAMDADEILLSAIR 301
Query: 288 VLKQKLD 294
VL+ +L+
Sbjct: 302 VLRNRLN 308
>gi|223998876|ref|XP_002289111.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
gi|220976219|gb|EED94547.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
Length = 297
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/304 (43%), Positives = 184/304 (60%), Gaps = 23/304 (7%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
QRFPKV+I + + +F L +TD SMAN LRR+MIAEVPT+AIDLVE NSSVLNDE+
Sbjct: 1 QRFPKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEY 60
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHL----------RAKCHSDQ 116
IAHRLGL+P+ R M+ ++C D +C C VEF L R D
Sbjct: 61 IAHRLGLVPI---RFMAEGSLKECVCYD---RCPRCCVEFELDVNFDKVNQTRPDTERDL 114
Query: 117 TLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
L VTS+DL S++ V P F++ D + + GI IVKL GQ L+L+AIAR GI K+
Sbjct: 115 ALTVTSRDLISNNMLVSPAHFLNEEEQDESHDE-GISIVKLGPGQHLKLKAIARMGISKE 173
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA- 235
HAKW P A T+ + P I INE+ L+LE+KQ VE+ P ++ ++D TG + V+
Sbjct: 174 HAKWCPVAVATYRFWPIITINEEACNMLTLEQKQELVEACPDRILELDEITGNLVAVENA 233
Query: 236 -EAYTYDDEVIKKAEAMGKPG----LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
E T+ +++ AM K V + D F+F+VESTGA+ A +++L+++ VLK
Sbjct: 234 YEMATFTEDLKTVQNAMKKRPEDDDFVNVVQSTDRFVFSVESTGAMDAEEILLSSLRVLK 293
Query: 291 QKLD 294
+L+
Sbjct: 294 DRLN 297
>gi|301093788|ref|XP_002997739.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
gi|262109988|gb|EEY68040.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
Length = 241
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/228 (51%), Positives = 155/228 (67%), Gaps = 6/228 (2%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+ RFPK+ ++EL+DD+ +FEL +TDAS+ANA+RRVMI+EVPT+AIDLV IE+N+SV+ DE
Sbjct: 3 HPRFPKIDVQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDE 62
Query: 66 FIAHRLGLIPLTSERAMS---MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
F+AHRLG+IPL + + RF D CD D C CSVEF L S L VTS
Sbjct: 63 FLAHRLGMIPLNFDGGLENFRQRFVYSQD-CDCDENCPNCSVEFTLDVTADSG-VLSVTS 120
Query: 123 KDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
+ L SSD + PV+F ++T Q G+II KL GQ LRL AIA+ GIGK+HAKWSP
Sbjct: 121 EALKSSDPYIRPVNFSSEEELNNT-QDSGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
A T+MY+P I +N+ ++ + S E+K +S PT+VF+ D N QV
Sbjct: 180 VAVATYMYDPIITLNQAVLSTYSPEQKAELYKSCPTEVFETDENYEQV 227
>gi|348687896|gb|EGZ27710.1| hypothetical protein PHYSODRAFT_554134 [Phytophthora sojae]
Length = 242
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 156/228 (68%), Gaps = 6/228 (2%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+ RFPK++I+EL+DD+ +FEL +TDAS+ANA+RRVMI+EVPT+AIDLV IE+N+SV+ DE
Sbjct: 3 HPRFPKIEIQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDE 62
Query: 66 FIAHRLGLIPLTSERAMS---MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
F+AHRLG+IPL + + RF D CD D C CSVEF L + L VTS
Sbjct: 63 FLAHRLGMIPLNFDGGLENFRQRFVYSAD-CDCDENCPNCSVEFSLDVTA-DNGVLSVTS 120
Query: 123 KDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
+ L SSD + PV+F ++T Q G+II KL GQ LRL AIA+ GIGK+HAKWSP
Sbjct: 121 EALKSSDPYIRPVNFSSEEELNNT-QDSGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
A T+MY+P I +N+ ++ + + E+K +S PT+V++ D N QV
Sbjct: 180 VAVATYMYDPIITLNQAVLSTYTPEQKAELYKSCPTEVYETDENYEQV 227
>gi|397615411|gb|EJK63419.1| hypothetical protein THAOC_15929 [Thalassiosira oceanica]
Length = 323
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 187/311 (60%), Gaps = 25/311 (8%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
QRFPK++I+ + F L +TD SMAN LRR+MIAEVPT+AIDLVE NSSVLNDE+
Sbjct: 4 QRFPKIEIKHIAPHEITFVLSETDTSMANTLRRIMIAEVPTLAIDLVEYHENSSVLNDEY 63
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDA-------CDGDGQCEFCSVEFHL----------R 109
IAHRLGLIP+ +++ DC C +C CSVEF L R
Sbjct: 64 IAHRLGLIPIRYSPDGTLK-GGDCHQAFVPHRECVCYDRCPRCSVEFDLDVNFDKVNMSR 122
Query: 110 AKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
+ D L VTS+DL +++ V P F++ D+ + GI IVKL +GQ LRL+AIA
Sbjct: 123 PEQERDLPLTVTSRDLIANNVQVSPAHFLNEEEQDNAHDE-GISIVKLGQGQHLRLKAIA 181
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
R GI K+HAKW P A T+ + PEI IN++ +L++E+KQ V++ P ++ ++D TG
Sbjct: 182 RMGISKEHAKWCPVAVATYRFWPEITINQEACNNLTMEQKQELVDACPDRILELDEITGN 241
Query: 230 VYVVDA--EAYTYDDEVIKKAEAMGKPG----LVEIYAKEDSFIFTVESTGAIKASQLVL 283
+ + E T+ +++ +AM + V++ D F+F+VES+GA+ A ++L
Sbjct: 242 LKPTEGAEELATFTEDLKYAQDAMKRRPEDDDYVQVTHSTDRFLFSVESSGAMDAEDILL 301
Query: 284 NAIEVLKQKLD 294
+++ VLK +L+
Sbjct: 302 SSLRVLKDRLN 312
>gi|290972439|ref|XP_002668960.1| predicted protein [Naegleria gruberi]
gi|284082499|gb|EFC36216.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/311 (42%), Positives = 179/311 (57%), Gaps = 32/311 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I L D+Y KF+L + D S+ANALRR+MIAEVPT+AIDLVE E+NSSVL+DEFIAHR
Sbjct: 12 QLSILALTDEYCKFKLSNVDTSIANALRRIMIAEVPTLAIDLVEFEMNSSVLHDEFIAHR 71
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPLT S ++ DC G CE CSVE L KC ++ DVTS DL S++
Sbjct: 72 LGLIPLTCLNINSFSYTSDCSC---TGHCEKCSVELTLHVKC-TESHRDVTSNDLISNNP 127
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
S P + D+ ++ GI IVKL+RGQE++L+AIA+KG+GK HAKWSP A T+
Sbjct: 128 SCAPCT-LSATSRDNENEHNGITIVKLKRGQEIKLKAIAKKGVGKGHAKWSPVAITTYYI 186
Query: 191 EPEIHIN--EDLMESLSLEEKQS----------WVESSPTKVFDIDPNTGQVYVVDAEAY 238
P+I I ++ + S ++ Q+ ++ S PTKVF + ++D +
Sbjct: 187 VPDIRIKGCQNTPVNPSDQDNQTEVPAADWIGKFINSCPTKVFSV--TNDDRLIIDLDKC 244
Query: 239 TY--------DDEVIKKAEAMGKPGLVEIYAKE----DSFIFTVESTGAIKASQLVLNAI 286
TY +DE+I K V I K+ FIFTVE+TG+ +VL
Sbjct: 245 TYCNECKDFVNDELIPNTSPEFK-DFVSIKEKDLGGKREFIFTVETTGSQTPENIVLLGF 303
Query: 287 EVLKQKLDAVR 297
+ L KL R
Sbjct: 304 DTLVGKLAKTR 314
>gi|221114057|ref|XP_002158521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Hydra
magnipapillata]
Length = 273
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 173/296 (58%), Gaps = 43/296 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P+VKI E DD KF L +TD S+AN+LRR+ IAEVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 66 FIAHRLGLIPLTS-ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS E+ M +SRDC + C+ CSV+F L KC + T VTS+D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSEF---CDECSVKFTLDVKCTGETTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFV---DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
L S D V+PV D GY TD+ I+IVKLR+GQEL+L A A+KG GK+HAKW+
Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDE---IVIVKLRKGQELKLHAFAKKGFGKEHAKWN 176
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
P A V+F Y+P ++ + + W +S ++ +D + Y
Sbjct: 177 PTAGVSFEYDP-----DNALRHTTFARPDQWPKSEYSQ-------------LDEDQYE-- 216
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+I+AK D F F VES G++K +V+ I VLK+KL ++
Sbjct: 217 -------------APYDIHAKADKFYFNVESCGSLKPENIVMTGISVLKKKLSELQ 259
>gi|225714130|gb|ACO12911.1| DNA-directed RNA polymerase II subunit RPB3 [Lepeophtheirus
salmonis]
Length = 279
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 171/291 (58%), Gaps = 39/291 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P + I EL +D KF L DTD S+ANA+RRVMIAE P +AID V++E NS+VL+DE
Sbjct: 3 YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLG+IPLTS+ A+ SM++SRDC D C C+VEF L KCH + T +VTS D
Sbjct: 63 FIAHRLGMIPLTSDDAVDSMQYSRDCTCTDF---CRECAVEFTLDVKCHEETTRNVTSAD 119
Query: 125 LYSSDHSVVPVDFVDPA--GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L SSD V+PV + G++ ++ I+IVKLR+GQEL++RA A+KG K+HAKW+P
Sbjct: 120 LKSSDPKVIPVTSRNQEEDGHEYGNENDDILIVKLRKGQELKVRAYAKKGFAKEHAKWNP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A V+F Y+P+ + L + + W +S T++ + D YD
Sbjct: 180 TAGVSFEYDPDNALRHTLY-----PKPEEWPKSEYTELEE-----------DQTQAPYD- 222
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
AK + F F E+ G++K +VL + VLK+KL
Sbjct: 223 ----------------YKAKPNKFFFITEAAGSLKPENIVLMGVAVLKKKL 257
>gi|40645083|dbj|BAD06460.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
gi|40645085|dbj|BAD06461.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
Length = 275
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 171/293 (58%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL DD KF + DT+ S+AN++RRV IAE PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L KC DQT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCADF---CSECSVEFTLDVKCTDDQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L SSD VVPV D A Y TD+ I+I+KLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGETDE---ILIIKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P +++M+ + W +S T++
Sbjct: 177 NPTAGVCFEYDP-----DNIMKHTLYPKPDEWPKSEHTEL-------------------- 211
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DE +AE + AK + F F VES+GA+K +VL I VLK KL
Sbjct: 212 -DEDQYEAEFNWE-------AKPNKFFFNVESSGALKPENIVLMGIVVLKNKL 256
>gi|291242309|ref|XP_002741050.1| PREDICTED: DNA directed RNA polymerase II polypeptide C-like
[Saccoglossus kowalevskii]
Length = 275
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 172/293 (58%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V++ EL DD KF + DTD S+ANALRRV IAEV TIAID ++IE NSSVL+DE
Sbjct: 3 YANQPSVRLSELSDDNVKFSVEDTDLSVANALRRVFIAEVATIAIDWIQIEANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FI+HR+GLIPLTS+ + M++SRDC C D C CSV+F L KC DQT VTS+D
Sbjct: 63 FISHRVGLIPLTSDEVVDRMQYSRDC-TC--DEFCPECSVDFMLDVKCTDDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFV---DPAG-YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L +S+ VVPV D AG Y D I+IVKLR+GQEL+L+A RKG K+HAKW
Sbjct: 120 LMTSNPRVVPVTSRHRDDEAGDYGDNDD---ILIVKLRKGQELKLKAYGRKGFAKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ + + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNTFRHTVYPKPEEWPKSEYSEL-------------------D 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DD+ +AMGKP + F VES GA++ +VL+ + VLK+KL
Sbjct: 213 DDQYQAPYDAMGKP---------NKFYLNVESCGALRPENIVLSGLAVLKKKL 256
>gi|340372125|ref|XP_003384595.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Amphimedon queenslandica]
Length = 274
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 180/306 (58%), Gaps = 46/306 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y + P VK+ E+ D+ KF + TD SMANALRR+ IAEVPT+AID + + NS+VL+DE
Sbjct: 3 YAKNPLVKVSEITDENVKFIIERTDLSMANALRRIFIAEVPTLAIDWIHLIANSTVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GL+PLTS+ + M++SR+C D C C++E+ L KC+ + T VT++D
Sbjct: 63 FIAHRIGLVPLTSDGTVDKMQYSRECTCNDF---CPMCAIEYTLDVKCNDESTRAVTTRD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L SS+ SV+PV + D + Y TD I+IVKLR+GQEL+L+A A KG GK+HAKW
Sbjct: 120 LLSSNQSVIPVTSMVRESDTSDYGLTDD---ILIVKLRKGQELKLKAYATKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAA ++F Y+P ++ + + + + W +S +++ + P
Sbjct: 177 SPAAGISFEYDP-----DNALRHTTYPKPEEWPKSEYSEIDESQPEAP------------ 219
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD--AVRL 298
+ +K F F VES+G+++A ++++ + VLKQKL ++L
Sbjct: 220 ----------------FDFKSKPSKFFFNVESSGSLRAETIIMSGLNVLKQKLSDLQIQL 263
Query: 299 SEDTVE 304
+ T E
Sbjct: 264 QQQTAE 269
>gi|387018210|gb|AFJ51223.1| DNA-directed RNA polymerase II subunit RPB3-like [Crotalus
adamanteus]
Length = 275
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 173/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELSDDNVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC+ D C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDGVVDKLQYSRDCNC---DEFCPDCSVEFSLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y D I+IVKLR+GQELRLRA A KG GK+HAKW
Sbjct: 120 LISNNSQVIPVTSRRRDNDPNDYVEPDD---ILIVKLRKGQELRLRAYATKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + +ID
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSEID---------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDEAQAAYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|350539355|ref|NP_001232142.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
gi|197127827|gb|ACH44325.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
Length = 275
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 177/293 (60%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M++SRDC C D C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDC-TC--DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S +++ D DA+A Y
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSEIDD----------EDAQA-PY 220
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
D GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 221 D--------PNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|260799989|ref|XP_002594919.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
gi|229280157|gb|EEN50930.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
Length = 275
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 171/293 (58%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P+V + EL D+ KF + DTD SMANA+RR+ IAEVPT+AID V++E NSSVL+DE
Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS+ + M++SRDC + C C++E L KC DQT VT++D
Sbjct: 63 FIAHRVGLIPLTSDDIVDRMQYSRDCTCAEF---CADCAIELTLDVKCTDDQTRHVTTRD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L SS+ VVPV + AGY D I+IVKLR+GQEL+LRA A+KG K+HAKW
Sbjct: 120 LISSNPRVVPVTSRRAEDETAGYGEADD---ILIVKLRKGQELKLRAFAKKGFAKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P+ + L + + W +S T++
Sbjct: 177 NPTAGVAFEYDPDNALRHTLY-----PKPEEWPKSEYTEL-------------------- 211
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DDE A+A P K + + VESTGA++ +V+ + +LK+KL
Sbjct: 212 DDET---AQAQFNPD-----GKPNKYYINVESTGALRPENIVMTGLSILKKKL 256
>gi|209881574|ref|XP_002142225.1| DNA-directed RNA polymerase II subunit RPB3 [Cryptosporidium muris
RN66]
gi|209557831|gb|EEA07876.1| DNA-directed RNA polymerase II subunit RPB3, putative
[Cryptosporidium muris RN66]
Length = 348
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 169/308 (54%), Gaps = 29/308 (9%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P ++I E KF L +TD SMANALRR+M+AE+PT+AIDLV I N+SVL+DEFI
Sbjct: 7 RTPHIEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFI 66
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
HRLGL+P+ S + F D C +C CSV++ L KC +VT D+YS
Sbjct: 67 VHRLGLLPIDSRQIRDFNFK---DRCGCQERCNKCSVDYTLDLKCEGPTVRNVTHLDIYS 123
Query: 128 SDHSVVPVDFVD---PAGYDSTD-QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+ +PV + P D TD GI+I KL GQ L R A KGIGK HAKW P
Sbjct: 124 T----LPVPNIPLPVPRKEDVTDPNNEGILIAKLGPGQSLTARMTATKGIGKFHAKWIPV 179
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDP----------------NT 227
AT TF E +I IN+ M ++SL+ ++ V S P VF + N
Sbjct: 180 ATATFTNEADIRINQSSMTNVSLKHRREIVNSCPKNVFGLSASKSEFGMFDKPVEKSTNI 239
Query: 228 GQVYVVDAEAYTYDDEVIKKAEAMG--KPGLVEIYAKEDSFIFTVESTGAIKASQLVLNA 285
+ V+++ + +E + +G P L+ + K D F F VESTGA+ A Q++ A
Sbjct: 240 PDIEVLNSSDCIFCNECVNTCRNLGYINPPLIRVDTKPDKFHFVVESTGAMPAEQIIEMA 299
Query: 286 IEVLKQKL 293
+E+L++KL
Sbjct: 300 LEILQEKL 307
>gi|427787879|gb|JAA59391.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 274
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 166/291 (57%), Gaps = 41/291 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DTD S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L KC +QT VT+ D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADF---CTECSVEFTLDVKCLDEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L SSD VVPV + + I+IVKLR+GQE++ RA A+KG GK+HAKW+P
Sbjct: 120 LKSSDPRVVPVTSRHKDDTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 179
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P ++ + + W +S YT DE
Sbjct: 180 GVAFEYDP-----DNAFRHTTYPRPEEWPKSE---------------------YTELDED 213
Query: 245 IKKAE--AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+AE + GKP + F + VES+GA+K +VL+ + VLK+KL
Sbjct: 214 HAEAEFQSEGKP---------NKFYYNVESSGALKPENIVLSGLSVLKKKL 255
>gi|348503818|ref|XP_003439459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oreochromis niloticus]
Length = 275
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 175/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD ++AN+LRRV ++EVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSLRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS+ + M++SRDC D C+ CSVE L +C+ DQT VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTCEDF---CQECSVELTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I++VKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDY---VEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ + + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNALRHTVYPRPEEWPKSEYSEI-------------------E 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +V++A+ VLK+KL
Sbjct: 213 EDEFQAPYDPNGKP---------ERFYYNVESCGSLRPETIVMSALAVLKKKL 256
>gi|45360897|ref|NP_989124.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|38511942|gb|AAH61444.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
gi|89266865|emb|CAJ83921.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|111598412|gb|AAH80362.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
Length = 275
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 176/293 (60%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS+ + +++SRDC C D C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDC-TC--DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S Y+
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSE---------------------YSE 210
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DE ++AEA P K + F + VES G+++ +VL+A+ LK+KL
Sbjct: 211 IDE--EEAEAPYDPT-----GKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|357630064|gb|EHJ78455.1| DNA-directed RNA polymerase II polypeptide [Danaus plexippus]
Length = 275
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 167/293 (56%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL DD KF + DT+ S+AN++RRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITELTDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L KC DQT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCADF---CTECSVEFTLDVKCTGDQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L SSD VVPV D A Y D+ I+I+KLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGELDE---ILIIKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P + V F Y+P +++M + W +S T+ +D + Y
Sbjct: 177 NPTSGVCFEYDP-----DNIMRHTLYPKPDEWPKSEHTE-------------LDEDQYEA 218
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
D AK + F + VES+GA+K +VL I VLK KL
Sbjct: 219 D---------------FNWEAKPNKFFYNVESSGALKPENIVLMGIVVLKNKL 256
>gi|47221930|emb|CAF98942.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 176/293 (60%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD ++AN++RRV ++EVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPLTS+ + +++SRDC C D C CSVE L +C DQT VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDC-TC--DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I++VKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDY---VEQDDILVVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++++ + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNVLRHTVYPRPEEWPKSEYSEI-------------------E 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE+ + GKP + F + VES G+++ +V++A+ VLK+KL
Sbjct: 213 EDEIQAPFDPNGKP---------EKFFYNVESCGSLRPENIVMSALAVLKKKL 256
>gi|327287828|ref|XP_003228630.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Anolis
carolinensis]
Length = 275
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 175/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELSDENVKFIVENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C D C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDVVDKLQYSRDC-TC--DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + +ID
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSEID---------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDEAQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|195031522|ref|XP_001988351.1| GH11119 [Drosophila grimshawi]
gi|195115860|ref|XP_002002474.1| GI12561 [Drosophila mojavensis]
gi|195397712|ref|XP_002057472.1| GJ18149 [Drosophila virilis]
gi|193904351|gb|EDW03218.1| GH11119 [Drosophila grimshawi]
gi|193913049|gb|EDW11916.1| GI12561 [Drosophila mojavensis]
gi|194141126|gb|EDW57545.1| GJ18149 [Drosophila virilis]
Length = 275
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 173/298 (58%), Gaps = 45/298 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L KC+ +QT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDF---CPECSVEFTLDVKCNEEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYD-----STDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
L SS+ V+PV + D STD+ I+I+KLR+GQEL+LRA A+KG GK+HAK
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESTDE---ILIIKLRKGQELKLRAYAKKGFGKEHAK 176
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
W+P A V F Y+P ++ M + W +S T++ D D
Sbjct: 177 WNPTAGVCFEYDP-----DNSMRHTLYPKPDEWPKSEHTELED-----------DQYEAP 220
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
Y+ E AK + F F VES+GA+K +V+ ++VLK KL ++
Sbjct: 221 YNWE-----------------AKPNKFFFNVESSGALKPENIVIMGVQVLKNKLSNLQ 261
>gi|346471307|gb|AEO35498.1| hypothetical protein [Amblyomma maculatum]
Length = 274
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 164/289 (56%), Gaps = 37/289 (12%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DTD S+AN++RRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSIRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L KC +QT VT+ D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADF---CTECSVEFTLDVKCLDEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L SSD VVPV + + I+IVKLR+GQE++ RA A+KG GK+HAKW+P
Sbjct: 120 LKSSDPRVVPVTSRHKDDTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 179
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P ++ + + W +S +++ DD V
Sbjct: 180 GVAFEYDP-----DNAFRHTTYPRPEEWHKSEYSEI-------------------EDDRV 215
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ GKP + F F VES+GA+K +VL + VLK+KL
Sbjct: 216 EADFLSEGKP---------NKFYFNVESSGALKPETIVLTGLSVLKKKL 255
>gi|410907303|ref|XP_003967131.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Takifugu rubripes]
Length = 275
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 175/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD ++AN++RRV ++EVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPLTS+ + +++SRDC C D C CSVE L +C DQT VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDC-TC--DDFCSECSVELTLDVRCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I++VKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDY---VEQDDILVVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ + + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNALRHTVYPRPEEWPKSEYSEI-------------------E 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DEV + GKP + F + VES G+++ +V++A+ VLK+KL
Sbjct: 213 EDEVQAPFDPHGKP---------EKFFYNVESCGSLRPENIVMSALAVLKKKL 256
>gi|432862447|ref|XP_004069860.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oryzias latipes]
Length = 275
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 174/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD ++AN++RRV ++EVPTIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS+ + M++SRDC D C CSVE L +C DQT VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTCEDF---CPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I++VKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDY---VEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ + + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNALRHTVYPRPEEWPKSEYSEI-------------------E 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DEV + GKP + F + VES G+++ +V++A+ VLK+KL
Sbjct: 213 EDEVQAPYDPNGKP---------ERFYYNVESCGSLRPETVVMSALAVLKKKL 256
>gi|170581298|ref|XP_001895623.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Brugia malayi]
gi|158597360|gb|EDP35528.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative [Brugia
malayi]
Length = 275
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 169/290 (58%), Gaps = 38/290 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I L D+ +F L DTD S+AN+LRR+ +AEVPT+AID V+IE NSSVL+DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M+FSRDC + C+FC+VE LR +C + VT+ D
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTEF---CQFCAVEMRLRVRCDDEGIRAVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQR-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
L +S+ V P V ++ + I+IVKLR+GQ++ ++ IA+KG GK+HAKW+P
Sbjct: 120 LETSNPDVAPACGVHIRNRNAEENASDDILIVKLRKGQDIDIKCIAKKGFGKEHAKWNPT 179
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
V F Y+P ++ + L + + W +S +++ DDE
Sbjct: 180 CCVAFEYDP-----DNALRHTMLAKPEEWPKSEYSQL-------------------EDDE 215
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ M KP + F FTVESTGA+KA ++L+ I VLK+KL
Sbjct: 216 YEAPFDPMAKP---------NKFWFTVESTGALKAENIILSGISVLKKKL 256
>gi|403338254|gb|EJY68358.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 329
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 175/289 (60%), Gaps = 9/289 (3%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P++KI EL KFEL +TD S+AN+LRR++IAEVPT+AIDLVE+ N+S L+DEFIAH
Sbjct: 36 PEIKILELSKYVIKFELLNTDLSVANSLRRIIIAEVPTMAIDLVEVVENTSALHDEFIAH 95
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS-S 128
RLGLIP+ S +FS D C +C CSV+F L A C ++V ++ + S
Sbjct: 96 RLGLIPMQSFDVDKFQFS---DKCACSSKCVNCSVQFKLHAVCSDRDQMEVNTRHINPLS 152
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+ S++PV +VD G ++ I+I+KL + Q+L + IARKG GK HAKWS AT
Sbjct: 153 ESSIMPVHYVDSQG----KEEDPILIMKLSKNQQLDMNLIARKGTGKLHAKWSSVATCQM 208
Query: 189 MYEPEIHINED-LMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
EP + I++D + L +++++ +V + P V+ + V + DA+ E ++
Sbjct: 209 RKEPIVEIDQDKINRDLDVQKRKEFVATCPRNVYKFNEMRNAVEIEDADKCILCIECVRF 268
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
A+A G V+I +E+ FIFTVESTG + ++ A+ +L KL ++
Sbjct: 269 AQANGLDRAVKIAEREEKFIFTVESTGVLAPEDIITRALTILSHKLKSL 317
>gi|50753469|ref|XP_414001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gallus
gallus]
Length = 275
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 174/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M++SRDC C D C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDC-TC--DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I+IVKLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDY---VEQDDILIVKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S Y+
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSE---------------------YSE 210
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DE + A+A P K + F + VES G+++ +VL+A+ LK+KL
Sbjct: 211 IDE--EDAQAPYDPN-----GKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|395506007|ref|XP_003757327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Sarcophilus harrisii]
Length = 275
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 175/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KGIGK+HAKW
Sbjct: 120 LISNTPRVIPVTSRSRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGIGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + +ID
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSEID---------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDEAQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|114051193|ref|NP_001040388.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
gi|95102714|gb|ABF51298.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
Length = 275
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 171/293 (58%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DT+ S+AN++RRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L KC +QT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCVDF---CSECSVEFTLDVKCTDEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L SSD VVPV D A Y D+ I+I+KLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGEADE---ILIIKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P +++M + W +S T++ N Q Y D + +
Sbjct: 177 NPTAGVSFEYDP-----DNIMRHTLYPKPDEWPKSEHTEL-----NEDQ-YEAD---FNW 222
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ AK + F + VES+GA+K +VL I VLK KL
Sbjct: 223 E-------------------AKPNKFFYNVESSGALKPENIVLMGIVVLKNKL 256
>gi|148234336|ref|NP_001084998.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
laevis]
gi|47682270|gb|AAH70601.1| MGC81245 protein [Xenopus laevis]
Length = 275
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 174/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V++ EL D+ KF + +TD ++AN++RRV IAEVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS+ + +++SRDC C D C CSVEF L +C DQT VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDC-TC--DEFCPECSVEFTLDVRCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + +ID Q Y
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSEIDEEEAQA--------PY 220
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
D GKP + F + VES G++K +VL+A+ LK+KL
Sbjct: 221 D--------PTGKP---------ERFYYNVESCGSLKPETIVLSALSGLKKKL 256
>gi|402590881|gb|EJW84811.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 275
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 169/290 (58%), Gaps = 38/290 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I L D+ +F L DTD S+AN+LRR+ +AEVPT+A+D V+IE NSSVL+DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAVDWVQIESNSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M+FSRDC + C+FC+VE LR +C + VT+ D
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTEF---CQFCAVEMRLRVRCDDEGIRAVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQR-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
L +S+ V P V ++ + I+IVKLR+GQ++ ++ IA+KG GK+HAKW+P
Sbjct: 120 LETSNPDVAPACGVHIRNRNAEENASDDILIVKLRKGQDIDIKCIAKKGFGKEHAKWNPT 179
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
V F Y+P ++ + L + + W +S +++ DDE
Sbjct: 180 CCVAFEYDP-----DNALRHTVLAKPEEWPKSEYSQL-------------------EDDE 215
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ M KP + F FTVESTGA+KA ++L+ I VLK+KL
Sbjct: 216 YEAPFDPMAKP---------NKFWFTVESTGALKAENIILSGISVLKKKL 256
>gi|225707818|gb|ACO09755.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Osmerus mordax]
Length = 275
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 174/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD ++AN++RRV ++EV TIAID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS+ + M++SRDC C D C CSVE L +C DQT VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDC-TC--DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q II+VKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDY---VEQDDIILVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ + + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNALRHTVFPRPEEWPKSEYSEI-------------------E 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DEV + GKP + F + VES G+++ +V++A+ VLK+KL
Sbjct: 213 EDEVEAPYDPNGKP---------ERFYYNVESCGSLRPETIVMSALAVLKKKL 256
>gi|312083749|ref|XP_003143992.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307760845|gb|EFO20079.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Loa loa]
Length = 275
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 170/290 (58%), Gaps = 38/290 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I L D+ +F L DTD S+AN+LRR+ +AEVPT+AID V+IE N+SVL+DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNTSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M+FSRDC + C+FC+VE LR +C + VT+ D
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTEF---CQFCAVEMRLRVRCDDEGIRAVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQR-GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
L +S+ V P V ++ + I+IVKLR+GQ++ ++ IA+KG GK+HAKW+P
Sbjct: 120 LETSNPDVAPACGVHIRNRNAEESASDDILIVKLRKGQDVDIKCIAKKGFGKEHAKWNPT 179
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
V+F Y+P ++ + L + + W +S +++ DDE
Sbjct: 180 CCVSFEYDP-----DNALRHTVLAKPEEWPKSEYSQL-------------------EDDE 215
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ M KP + F FTVESTGA+KA ++L+ I VLK+KL
Sbjct: 216 YEASFDPMAKP---------NKFWFTVESTGALKAENIILSGISVLKKKL 256
>gi|126296213|ref|XP_001365715.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Monodelphis domestica]
Length = 275
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 175/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP+ Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNTPRVIPVTSRSRDNDPSDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + +ID
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSEID---------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDEAQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|195472723|ref|XP_002088649.1| GE18688 [Drosophila yakuba]
gi|194174750|gb|EDW88361.1| GE18688 [Drosophila yakuba]
Length = 275
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 170/295 (57%), Gaps = 39/295 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L KC +QT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDF---CPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDST--DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L SS+ V+PV + D+ + I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A V F Y+P ++ M + W +S T++ D D Y+
Sbjct: 180 TAGVCFEYDP-----DNSMRHTLYPKPDEWPKSEHTELED-----------DQYEAPYNW 223
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E AK + F F VES+GA+K +V+ ++VLK KL ++
Sbjct: 224 E-----------------AKPNKFFFNVESSGALKPENIVVMGVQVLKNKLSNLQ 261
>gi|241853662|ref|XP_002415909.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
gi|215510123|gb|EEC19576.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
Length = 274
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 167/292 (57%), Gaps = 43/292 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DTD S+AN+LRRV IAEV T+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF + KC +QT VT+ D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADF---CTECSVEFTIDVKCLDEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV---DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
L SSD VVPV D Y TD I+IVKLR+GQE++ RA A+KG GK+HAKW+
Sbjct: 120 LKSSDPRVVPVTSRHKDDTNEYGETDD---ILIVKLRKGQEVKARAYAKKGFGKEHAKWN 176
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
P V F Y+P ++ + + W +S +++ D
Sbjct: 177 PTCGVAFEYDP-----DNAFRHTTYPRPEEWPKSEYSEI-------------------ED 212
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
D+V GKP + F F VES+GA+K +VL+ + VLK+KL
Sbjct: 213 DKVEADFIVEGKP---------NKFYFNVESSGALKPETIVLSGLNVLKKKL 255
>gi|195579088|ref|XP_002079394.1| GD23930 [Drosophila simulans]
gi|194191403|gb|EDX04979.1| GD23930 [Drosophila simulans]
Length = 275
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 169/295 (57%), Gaps = 39/295 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L KC +QT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDF---CPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDST--DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L SS+ V+PV + D+ + I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A V F Y+P ++ M + W +S T++ D D Y+
Sbjct: 180 TAGVCFEYDP-----DNSMRHTLYPKPDEWPKSEHTELED-----------DQYEAPYNW 223
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E AK + F F VES GA+K +V+ ++VLK KL ++
Sbjct: 224 E-----------------AKPNKFFFNVESAGALKPENIVIMGVQVLKNKLSNLQ 261
>gi|221043080|dbj|BAH13217.1| unnamed protein product [Homo sapiens]
Length = 424
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/308 (40%), Positives = 178/308 (57%), Gaps = 44/308 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPL S+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + ++D
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYLELD---------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKLTNKEAER 263
Query: 301 DTVEADDQ 308
D + + +Q
Sbjct: 264 DMLPSPEQ 271
>gi|395839490|ref|XP_003792622.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Otolemur
garnettii]
Length = 275
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 173/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPL S+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ H V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LVSNHHRVIPVTSRSRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S +++
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSELD------------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|17137650|ref|NP_477419.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|4490379|emb|CAB38635.1| RNA polymerase II p33 subunit [Drosophila melanogaster]
gi|7298103|gb|AAF53342.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|16767948|gb|AAL28192.1| GH07456p [Drosophila melanogaster]
gi|220944002|gb|ACL84544.1| RpII33-PA [synthetic construct]
gi|220953902|gb|ACL89494.1| RpII33-PA [synthetic construct]
Length = 275
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 169/295 (57%), Gaps = 39/295 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L KC +QT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDF---CPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDST--DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L SS+ V+PV + D+ + I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A V F Y+P ++ M + W +S T++ D D Y+
Sbjct: 180 TAGVCFEYDP-----DNSMRHTLYPKPDEWPKSEHTELED-----------DQYEAPYNW 223
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E AK + F F VES GA+K +V+ ++VLK KL ++
Sbjct: 224 E-----------------AKPNKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQ 261
>gi|125984946|ref|XP_001356237.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|195164762|ref|XP_002023215.1| GL21238 [Drosophila persimilis]
gi|54644558|gb|EAL33299.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|194105300|gb|EDW27343.1| GL21238 [Drosophila persimilis]
Length = 275
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 170/295 (57%), Gaps = 39/295 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L KC +QT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDF---CPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDST--DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L +S+ V+PV + D+ + I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKTSNPKVLPVTSRNQGEEDNEYGESSDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A V F Y+P ++ M + W +S T++ D D Y+
Sbjct: 180 TAGVCFEYDP-----DNCMRHTLYPKPDEWPKSEHTELED-----------DQFEAPYNW 223
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E AK + F F VES+GA+K +V+ ++VLK KL ++
Sbjct: 224 E-----------------AKPNKFFFNVESSGALKPENIVIMGVQVLKNKLSNLQ 261
>gi|328768461|gb|EGF78507.1| hypothetical protein BATDEDRAFT_20338 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 172/324 (53%), Gaps = 47/324 (14%)
Query: 1 MDGA-SYQRFPKVKIRELKDDY----AKFELRDTDASMANALRRVMIAEVPTIAIDLVEI 55
MD A S Q P V++ + D F L +TD S+ANALRR MIAEVPT+AIDLVE
Sbjct: 1 MDAAFSAQSGPIVQVTSIIDTQNTKSVSFILGNTDLSVANALRRTMIAEVPTVAIDLVEF 60
Query: 56 EVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD 115
E NSSVL DEF+AHRLGLIPL SE+ ++ ++RDC C CSVE HL +C +
Sbjct: 61 ESNSSVLTDEFLAHRLGLIPLNSEQVGTITYTRDCSCTQ---YCPQCSVELHLNVRCDEE 117
Query: 116 QTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGK 175
T +VTS+DL SS S++P+ D GI+I KLR+GQE+ LR IA+KG K
Sbjct: 118 FTREVTSRDLISSHSSIMPIIH--------GDDDSGIMIAKLRKGQEINLRCIAKKGTAK 169
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN-TGQVYVVD 234
+HAKWSP A + F Y+P L WVE + + N + VVD
Sbjct: 170 EHAKWSPCAGIAFEYDPHNR----------LRHTTYWVEDDIKSEWPVSANGLLEPEVVD 219
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
E + ++ AK D F TVE TGAI ++V A+ +++ KL
Sbjct: 220 DEPFDFN-------------------AKPDKFYMTVEGTGAIDPKEIVTTALRIMQTKLS 260
Query: 295 AVRLSEDTVEADDQFGELGAHMRG 318
V++ + +DD A M G
Sbjct: 261 LVQMLIKEI-SDDNDDSSRAQMNG 283
>gi|269784633|ref|NP_001161428.1| DNA-directed RNA polymerase II subunit RPB3 [Danio rerio]
gi|28278474|gb|AAH46047.1| Polymerase (RNA) II (DNA directed) polypeptide C [Danio rerio]
Length = 275
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 174/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD ++AN++RRV ++EVPTIAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPLTS+ + M++SRDC C D C CSVE L +C DQT VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDC-TC--DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ V+PV DP Y +Q I++VKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDY---VEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + Q W +S +++
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPIPQEWPKSEYSEI-------------------E 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+D V + + GKP + F + VES G+++ +V++A+ +LK+KL
Sbjct: 213 EDGVQAQYDPNGKP---------ERFYYNVESCGSLRPETIVMSALAMLKKKL 256
>gi|196004242|ref|XP_002111988.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
gi|190585887|gb|EDV25955.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
Length = 274
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 173/297 (58%), Gaps = 42/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P+V I +L ++ KF L +TD S+AN+LRR+ IA VPT+AID V+ N+SVL+DE
Sbjct: 3 YASQPRVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLT + + +++SRDC+ + C CSVEF L +C+ DQT VT++D
Sbjct: 63 FIAHRLGLIPLTCDEVIDRLQYSRDCNCVE---HCPECSVEFTLDVRCNDDQTRHVTTRD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDST---DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
L SSD VVPV G D T DQ+ I+I KLRRGQE++++A A+KG+G +HAKW+
Sbjct: 120 LISSDSRVVPV--TTRYGEDDTVYGDQEDDILIAKLRRGQEIKIKAYAKKGLGTEHAKWN 177
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
P A+V F Y+P ++ M + + + W +S + + + D +YD
Sbjct: 178 PTASVAFEYDP-----DNAMRHTTYPKPEEWPKSEYSNLPE-----------DNYEASYD 221
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRL 298
+ + D F VE++G+++ +VL+ I LK KL ++L
Sbjct: 222 PQTVA-----------------DKFYLNVETSGSLRPENIVLSGISTLKNKLSELQL 261
>gi|335289326|ref|XP_003355849.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Sus
scrofa]
Length = 275
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 174/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP+ Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPSDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S +++
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSELD------------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|324521335|gb|ADY47834.1| DNA-directed RNA polymerase II subunit RPB3 [Ascaris suum]
Length = 275
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 167/290 (57%), Gaps = 38/290 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P+V I L D+ KF L DTD S+AN+LRR+ IAEVPT+AID V+IE N+SVL+DE
Sbjct: 3 YANQPRVTISMLNDEMVKFVLEDTDLSVANSLRRIFIAEVPTMAIDWVQIEANTSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS + ++SRDC D C C+VE L + + T VT+ D
Sbjct: 63 FIAHRMGLIPLTSNNVVDKFQYSRDCQCNDF---CPECAVEMRLSVRWDDEGTRSVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD-QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
L SS+ +VVP G ++ D I+IVKLRRGQE+R++ A+KG GK+HAKW+P
Sbjct: 120 LESSNAAVVPACGRHLQGRNAEDGTSEDILIVKLRRGQEIRMKCYAKKGFGKEHAKWNPT 179
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
V F Y+P ++ + L + + W +S +++ +DE
Sbjct: 180 CGVAFEYDP-----DNALRHTVLAKPEEWPKSEYSQL-------------------EEDE 215
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ M KP + F FTVES+GA+KA +VL+ I VLK+KL
Sbjct: 216 YEAPYDPMAKP---------NKFWFTVESSGALKAENIVLSGINVLKKKL 256
>gi|195433589|ref|XP_002064793.1| GK15011 [Drosophila willistoni]
gi|194160878|gb|EDW75779.1| GK15011 [Drosophila willistoni]
Length = 275
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 170/295 (57%), Gaps = 39/295 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L KC+ +QT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDF---CPECSVEFTLDVKCNEEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDST--DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L SS+ V+PV + D+ + I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A V F Y+P ++ M + W +S +++ D
Sbjct: 180 TAGVCFEYDP-----DNSMRHTLYPKPDEWPKSEHSELED-------------------- 214
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E P E AK + F F VES+GA+K +V+ ++VLK KL ++
Sbjct: 215 ------EQFEAPYNWE--AKPNKFFFNVESSGALKPENIVVMGVQVLKNKLSNLQ 261
>gi|195338303|ref|XP_002035764.1| GM15286 [Drosophila sechellia]
gi|194129644|gb|EDW51687.1| GM15286 [Drosophila sechellia]
Length = 275
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 168/295 (56%), Gaps = 39/295 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L KC +QT VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLDF---CPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDST--DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L SS+ V+PV D+ + I+I+KLR+GQEL+LRA A+KG GK+HAKW+P
Sbjct: 120 LKSSNAKVLPVTSRHQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 179
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A V F Y+P ++ M + W +S T++ D D Y+
Sbjct: 180 TAGVCFEYDP-----DNSMRHTLYPKPDEWPKSEHTELED-----------DQYEAPYNW 223
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E AK + F F VES GA+K +V+ ++VLK KL ++
Sbjct: 224 E-----------------AKPNKFFFNVESAGALKPENIVIMGVQVLKNKLSNLQ 261
>gi|209730678|gb|ACI66208.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 174/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD S+AN++RRV ++EV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS+ + M++SRDC C D C CSVE L A+C DQT VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDC-TC--DDFCPECSVELTLDARCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I++VKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDY---VEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ + + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNALRHTVYPRPEEWPKSEYSEI-------------------E 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DEV + GKP + F + VE+ G+++ +V++A+ VLK+KL
Sbjct: 213 EDEVQAPFDPNGKP---------ERFYYNVETCGSLRPETIVMSALAVLKKKL 256
>gi|77735375|ref|NP_001029384.1| DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|73949776|ref|XP_535283.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Canis lupus familiaris]
gi|149699174|ref|XP_001494261.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1 [Equus caballus]
gi|301752940|ref|XP_002912312.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ailuropoda melanoleuca]
gi|348572668|ref|XP_003472114.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Cavia
porcellus]
gi|426242429|ref|XP_004015075.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Ovis aries]
gi|122146160|sp|Q3T0Q3.1|RPB3_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|74268238|gb|AAI02302.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Bos
taurus]
gi|152941118|gb|ABS44996.1| DNA directed RNA polymerase II polypeptide C [Bos taurus]
gi|281346645|gb|EFB22229.1| hypothetical protein PANDA_000038 [Ailuropoda melanoleuca]
gi|296477912|tpg|DAA20027.1| TPA: DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|351697739|gb|EHB00658.1| DNA-directed RNA polymerase II subunit RPB3 [Heterocephalus glaber]
gi|417398216|gb|JAA46141.1| Putative rna polymerase ii subunit polr2c/rpb3 [Desmodus rotundus]
gi|440902632|gb|ELR53402.1| DNA-directed RNA polymerase II subunit RPB3 [Bos grunniens mutus]
Length = 275
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 173/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S +++
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSELD------------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|443691223|gb|ELT93136.1| hypothetical protein CAPTEDRAFT_155833 [Capitella teleta]
Length = 270
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 166/289 (57%), Gaps = 41/289 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I E + KF L DTD S+ANALRRV IAE P IAID V+I N++VL DE
Sbjct: 3 YANKPTVRITESTSENLKFILEDTDLSVANALRRVFIAETPIIAIDWVQINANTTVLCDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+A R+GLIPL S+ + M++SRDC + C+ CSVEF L KC DQT VTS D
Sbjct: 63 FLAQRVGLIPLASDDVIDKMQYSRDCTC---EEFCQECSVEFTLDVKCSDDQTRSVTSAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L S++ VVPV + DST +Q+GI+IVKLR+GQ+L+L+A ARKG K+HAKW+P
Sbjct: 120 LISNNSEVVPVT----SKQDSTQEQKGILIVKLRKGQDLKLKAYARKGFAKEHAKWNPTC 175
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P ++++ + + W S +++ D D TYD
Sbjct: 176 GVAFEYDP-----DNILRHTTYPRPEEWPRSEFSELSD-----------DEYQGTYDPN- 218
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
GKP + F F VE+ G++ +++ + + V+K+KL
Sbjct: 219 -------GKP---------NKFFFNVEAVGSLMPEKIITSGLSVMKKKL 251
>gi|355712722|gb|AES04444.1| polymerase II polypeptide C, 33kDa [Mustela putorius furo]
Length = 273
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 173/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 2 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 61
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 62 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 118
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 119 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 175
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S +++
Sbjct: 176 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSELD------------------- 211
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 212 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 255
>gi|444725635|gb|ELW66196.1| DNA-directed RNA polymerase II subunit RPB3 [Tupaia chinensis]
Length = 707
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 173/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 435 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 494
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C+ C CSVEF L +C+ DQT VTS+D
Sbjct: 495 FIAHRLGLIPLTSDDIVDKLQYSRDC-TCEEF--CPECSVEFTLDVRCNEDQTRHVTSRD 551
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y D I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 552 LISNSPRVIPVTSRNRDNDPNDYVEQDD---ILIVKLRKGQELRLRAYAKKGFGKEHAKW 608
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + ++D
Sbjct: 609 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELD---------------- 644
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 645 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 688
>gi|337497|gb|AAA36586.1| RNA polymerase subunit hRPB 33 [Homo sapiens]
gi|2920709|emb|CAA11842.1| RNA polymerase II subunit [Homo sapiens]
gi|2920711|emb|CAA11843.1| RNA polymerase subunit [Homo sapiens]
Length = 275
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 173/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPL S+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + + W +S +++
Sbjct: 177 NPTAGVAFEYDP-----DNALRTTVYPKPEEWPKSEYSEL-------------------D 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|432119373|gb|ELK38451.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 275
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 171/293 (58%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN+LRRV I EVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAVANSLRRVFIGEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y D I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVDQDD---ILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S +++
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSELD------------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|218931178|ref|NP_001135345.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|209734758|gb|ACI68248.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223647266|gb|ACN10391.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223673145|gb|ACN12754.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 173/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD S+AN++RRV ++EV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS+ + M++SRDC C D C CSVE L +C DQT VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDC-TC--DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I++VKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDY---VEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ + + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNALRHTVYPRPEEWPKSEYSEI-------------------E 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DEV + GKP + F + VE+ G+++ +V++A+ VLK+KL
Sbjct: 213 EDEVQAPFDPNGKP---------ERFYYNVETCGSLRPETIVMSALAVLKKKL 256
>gi|225716034|gb|ACO13863.1| DNA-directed RNA polymerase II subunit RPB3 [Esox lucius]
Length = 275
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 173/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + +TD S+AN++RRV ++EV TIAID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS+ + M++SRDC C D C CSVE L +C DQT VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDC-TC--DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I++VKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDY---VEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ + + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNALRHTVYPRPEEWPKSEYSEI-------------------E 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DEV + GKP + F + VE+ G+++ +V++A+ VLK+KL
Sbjct: 213 EDEVQAPFDPNGKP---------ERFYYNVETCGSLRPETIVMSALAVLKKKL 256
>gi|12837765|dbj|BAB23943.1| unnamed protein product [Mus musculus]
Length = 275
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 174/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + ++D
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELD---------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPKGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|29336059|ref|NP_033116.2| DNA-directed RNA polymerase II subunit RPB3 [Mus musculus]
gi|60223073|ref|NP_001012491.1| DNA-directed RNA polymerase II subunit RPB3 [Rattus norvegicus]
gi|354495470|ref|XP_003509853.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Cricetulus griseus]
gi|12805131|gb|AAH02023.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|59808391|gb|AAH89905.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Rattus
norvegicus]
gi|68534485|gb|AAH99548.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|74145092|dbj|BAE27415.1| unnamed protein product [Mus musculus]
gi|74191349|dbj|BAE30257.1| unnamed protein product [Mus musculus]
gi|74213568|dbj|BAE35592.1| unnamed protein product [Mus musculus]
gi|149032426|gb|EDL87317.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_b
[Rattus norvegicus]
gi|344256627|gb|EGW12731.1| DNA-directed RNA polymerase II subunit RPB3 [Cricetulus griseus]
Length = 275
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 174/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + ++D
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELD---------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|156371210|ref|XP_001628658.1| predicted protein [Nematostella vectensis]
gi|156215640|gb|EDO36595.1| predicted protein [Nematostella vectensis]
Length = 274
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 167/291 (57%), Gaps = 40/291 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P VKI EL D+ KF + T SMAN LRR+ IAE PTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGL+PLTS+ + M FSRDC D C+ CS+EF L KC D T VT++D
Sbjct: 63 FIAHRLGLVPLTSDEVVDRMTFSRDCTC---DEFCDDCSIEFTLDVKCTDDSTRHVTTQD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L S++ VPV + DS + +Q I+IVKLR+GQEL+LRA A+KG K+HAKW+P
Sbjct: 120 LISTNPRCVPVTSRNRED-DSREYMEQDDILIVKLRKGQELKLRAFAKKGFAKEHAKWNP 178
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A V F Y+P ++ + + + W +S T+ ++ + Y
Sbjct: 179 TAGVAFEYDP-----DNALRHTTYPRPEEWPKSEYTE-------------LEEDQY---- 216
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+A P AK D F VES G++K +VL+ + +LK+KL
Sbjct: 217 ------QAPFDPN-----AKADKFYINVESCGSLKPENIVLSGLAILKKKL 256
>gi|198422271|ref|XP_002119444.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 [Ciona intestinalis]
gi|198422273|ref|XP_002119542.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 3 [Ciona intestinalis]
gi|198422275|ref|XP_002119306.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 1 [Ciona intestinalis]
Length = 277
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 168/286 (58%), Gaps = 36/286 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V I EL +D KF + DTD S AN++RRV IAEVPT+AID ++IE NSSVLNDEF++H
Sbjct: 7 PTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDEFLSH 66
Query: 70 RLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
R+GLIPLTS+ + +++SRDC C D C+ CSVEF+L KC + T VT++DL S
Sbjct: 67 RIGLIPLTSDDVVDKIQYSRDC-MC--DDFCQDCSVEFYLDVKCTGEGTRQVTTRDLISM 123
Query: 129 DHSVVPVDFVDPA-GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
+ VVP+ S +Q I+I KLR+GQ L+ +A A+KG GK+HAKW + V
Sbjct: 124 NPKVVPITSRSRGDSSKSFGEQDDILIAKLRKGQSLKFKAFAKKGFGKEHAKWQCVSAVA 183
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
F Y+P ++ + + + + W +S +++ D D + Y D
Sbjct: 184 FEYDP-----DNALRHTTYPKPEEWPKSEYSELAD-----------DEDKYQAD------ 221
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ GKP + F F VESTGA++ +VLN + VLK+KL
Sbjct: 222 FDPHGKP---------NKFFFNVESTGALRPENIVLNGLAVLKKKL 258
>gi|146169387|ref|XP_001471367.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila]
gi|116575|sp|P16925.1|CNJC_TETTH RecName: Full=Conjugation stage-specific protein
gi|2654270|emb|CAA44194.1| RNA polymerase subunit [Tetrahymena thermophila]
gi|146145111|gb|EDK31657.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila
SB210]
Length = 310
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 180/295 (61%), Gaps = 13/295 (4%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ + L++ +F L + D S+AN+LRR+++AE+ TIAI V++ N+S L DE+IAHR
Sbjct: 5 KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHR 64
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL----- 125
LGLIPL S + + +C+ G+C+ C++ F LR +++ L+VTS DL
Sbjct: 65 LGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQD 121
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQR--GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
++ + +V P+ V D +R GI I+KL +GQ++ A+KGIGK H+KW+P
Sbjct: 122 HTDEDAVRPIK-VYSILRDEYGNKREVGIPIIKLSKGQQIHFECEAQKGIGKMHSKWNPV 180
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
TF EPEI ++++ ++L +E+K++ V + PTKVF I+P+T + V D Y +E
Sbjct: 181 CISTFSVEPEIIFDQEI-QNLDIEQKKALVNACPTKVFGINPHTNTLEVQDHMKCMYCEE 239
Query: 244 VIKK-AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ K AE KP L++I K+D F F VE+TG +K +++ L+QKLD +R
Sbjct: 240 CVYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMR 294
>gi|14702171|ref|NP_116558.1| DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens]
gi|384475805|ref|NP_001245048.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|114662810|ref|XP_001148305.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Pan troglodytes]
gi|296231192|ref|XP_002761051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Callithrix
jacchus]
gi|297698834|ref|XP_002826511.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pongo
abelii]
gi|397506549|ref|XP_003823789.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pan
paniscus]
gi|402908526|ref|XP_003916990.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Papio
anubis]
gi|403306002|ref|XP_003943535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Saimiri
boliviensis boliviensis]
gi|426382315|ref|XP_004057753.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gorilla
gorilla gorilla]
gi|3915850|sp|P19387.2|RPB3_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|2266931|gb|AAC14355.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|3252823|gb|AAC24309.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|12653281|gb|AAH00409.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|13111973|gb|AAH03159.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|20380436|gb|AAH28157.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|49457035|emb|CAG46838.1| POLR2C [Homo sapiens]
gi|60823189|gb|AAX36635.1| polymerase II polypeptide C [synthetic construct]
gi|90079489|dbj|BAE89424.1| unnamed protein product [Macaca fascicularis]
gi|119603332|gb|EAW82926.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603333|gb|EAW82927.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603335|gb|EAW82929.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603336|gb|EAW82930.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|123981016|gb|ABM82337.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|123995821|gb|ABM85512.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|157928942|gb|ABW03756.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|158259685|dbj|BAF85801.1| unnamed protein product [Homo sapiens]
gi|208967078|dbj|BAG73553.1| polymerase (RNA) II (DNA directed) polypeptide C [synthetic
construct]
gi|355710235|gb|EHH31699.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|355756811|gb|EHH60419.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca fascicularis]
gi|383419311|gb|AFH32869.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|384947770|gb|AFI37490.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|410206970|gb|JAA00704.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410264222|gb|JAA20077.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410307460|gb|JAA32330.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410331907|gb|JAA34900.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
Length = 275
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 172/293 (58%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPL S+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S +++
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSELD------------------- 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|344289201|ref|XP_003416333.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Loxodonta africana]
Length = 275
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 173/293 (59%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPL S+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S Y+
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSE---------------------YSE 210
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DE ++++A P K + F + VES G+++ +VL+A+ LK+KL
Sbjct: 211 LDE--EESQAPYDPN-----GKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|291390190|ref|XP_002711589.1| PREDICTED: DNA directed RNA polymerase II polypeptide C
[Oryctolagus cuniculus]
Length = 275
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 172/293 (58%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + ++ SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQNSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S +++
Sbjct: 177 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKSEYSEL-------------------D 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 256
>gi|321475674|gb|EFX86636.1| hypothetical protein DAPPUDRAFT_313021 [Daphnia pulex]
Length = 274
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 168/290 (57%), Gaps = 39/290 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P +K+ EL ++ KF++ DTD S+AN+LRRV IAE PT+AID V+ E NS+VL DE
Sbjct: 3 YANQPNLKLTELTEENVKFQISDTDLSVANSLRRVFIAETPTLAIDWVQFEANSTVLFDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPLTS+ ++ M++SRDC D C CSVEF L KC D T +VT+ D
Sbjct: 63 FLAHRVGLIPLTSDESVEKMQYSRDCTCPDF---CVDCSVEFTLDVKCSEDVTRNVTTAD 119
Query: 125 LYSSDHSVVP-VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
L S+D VVP D D D + I+IVKLR+GQEL++RA A+KG GK+HAKW+P
Sbjct: 120 LKSTDPRVVPATSKRDEEPPDDNDNE--ILIVKLRKGQELKMRAYAKKGFGKEHAKWNPT 177
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
A V F Y+P+ + L + + W S +++ + D + YD +
Sbjct: 178 AGVAFEYDPDNSLRHTL-----FPKPEEWPRSEYSELGESDQHQA----------PYDPD 222
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
GKP + F VES G+++ +VL I +LK+KL
Sbjct: 223 --------GKP---------NKFFVNVESCGSLRPENIVLMGIAILKKKL 255
>gi|157119713|ref|XP_001659470.1| DNA-directed RNA polymerase II subunit [Aedes aegypti]
gi|108875224|gb|EAT39449.1| AAEL008755-PA [Aedes aegypti]
Length = 275
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 165/298 (55%), Gaps = 45/298 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DTD S+ N+LRRV IAE PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + M++SRDC D C CSVEF L KC+ + T VT+ D
Sbjct: 63 FLAHRVGLIPLISDEVVERMQYSRDCTCLDF---CTECSVEFTLDVKCNDEHTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAK 179
L SSD V+P V D D + G I+I+KLR+GQEL+LRA A+KG GK+HAK
Sbjct: 120 LKSSDPRVLP---VTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLRAYAKKGFGKEHAK 176
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
W+P V F Y+P ++ M + W +S T++ D + Y
Sbjct: 177 WNPTCGVCFEYDP-----DNSMRHTLFPKPDEWPKSEHTELED-------------DKYE 218
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
D AK + F F VES+GA+K +V+ ++VLK KL ++
Sbjct: 219 AD---------------FNWEAKPNKFFFNVESSGALKPENIVMMGVQVLKNKLSNLQ 261
>gi|312378871|gb|EFR25321.1| hypothetical protein AND_09454 [Anopheles darlingi]
Length = 273
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 172/305 (56%), Gaps = 47/305 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DT+ S+AN+LRRV IAE PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTISELTDENVKFVVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + M++SRDC D C CSVEF L KC+ + T VT+ D
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLDF---CNDCSVEFTLDVKCNEEHTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAK 179
L SSD V+P V D D + G I+I+KLR+GQEL+L+A A+KG GK+HAK
Sbjct: 120 LKSSDPRVLP---VTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKAYAKKGFGKEHAK 176
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
W+P V+F Y+P ++ M + W +S T++ D D
Sbjct: 177 WNPTCGVSFEYDP-----DNAMRHTLYPKPDEWPKSEHTELDD-----------DKYEAD 220
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV--R 297
Y+ E+ K + F F VES+GA+K +VL ++VLK KL + +
Sbjct: 221 YNWEL-----------------KPNKFFFNVESSGALKPENIVLMGVQVLKNKLSNLQTQ 263
Query: 298 LSEDT 302
LS +T
Sbjct: 264 LSHET 268
>gi|298705011|emb|CBJ28486.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 262
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 152/237 (64%), Gaps = 16/237 (6%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P+V+I +L++D+ +F L +TD S+ANALRRVMIAEVPT+AIDLV I NSSVL DEF+
Sbjct: 5 RAPQVEIVDLREDFVEFVLSNTDTSVANALRRVMIAEVPTMAIDLVTIHDNSSVLQDEFL 64
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHL----------RAKCHSDQT 117
+HRLGLIPL ++ + ++ DCD D C+ CS F L R + DQ
Sbjct: 65 SHRLGLIPLAADPGVQYEYNYDCDCED---YCDKCSAVFTLDVSWDKKALGRPEHMQDQP 121
Query: 118 LDVTSKDLYSSDHSVVPVDFVDPAGYDSTD--QQRGIIIVKLRRGQELRLRAIARKGIGK 175
+ VTS DL SSD + V F P+ ++D Q GIII KL +GQ ++L A+A+KGI K
Sbjct: 122 VHVTSADLVSSDPRLRAVHFA-PSDQTNSDISQDAGIIIAKLAKGQRMQLTAVAKKGIAK 180
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
+HAKWSP A T+ +EP I INE+ L+ E+K +VE P KV+ D +G ++V
Sbjct: 181 EHAKWSPVAVATYKFEPVIEINEEKEALLTPEQKAEFVEICPAKVYGRDEKSGTIFV 237
>gi|407410818|gb|EKF33119.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi marinkellei]
Length = 337
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 173/307 (56%), Gaps = 28/307 (9%)
Query: 11 KVKIRELKD------DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
KVKI + K + +F+L + D S AN LRRVM+AEVP + I+ V I N+SVL D
Sbjct: 2 KVKILDCKKHEHSAGETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPD 61
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVTSK 123
E IAHR+GL+PL S +A M+++RDC C G G C C + L+ C S++ +L V
Sbjct: 62 EMIAHRIGLVPLYSMKARRMQYARDC-LCGGSG-CGECQINGELKVSCPSNKHSLQVFMD 119
Query: 124 DLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
L D V PV + ++RG+ ++ L R QEL LR + RK I K HAK+ P
Sbjct: 120 SLKIDDEEVYPV----------SSEERGVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPV 169
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
ATV Y +I +N D L E ++ WVE P +VF D TGQV + D +A + E
Sbjct: 170 ATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDDRTGQVLLADPDACIFCRE 229
Query: 244 VIKKAEAMGKPG--LVEIYAKEDS-----FIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ K K LV + K+D F FTVESTGA+ Q++ +A+EVL++KL+ V
Sbjct: 230 CLLKEPPFNKLAEPLVFLRHKKDKRGYYDFTFTVESTGALPVLQILYDAVEVLRRKLERV 289
Query: 297 R--LSED 301
R L+ED
Sbjct: 290 RDGLTED 296
>gi|407832302|gb|EKF98383.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 365
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 173/307 (56%), Gaps = 28/307 (9%)
Query: 11 KVKIRELKD------DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
KVKI + K + +F+L + D S AN LRRVM+AEVP + I+ V I N+SVL D
Sbjct: 30 KVKILDCKKHEHSAGETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPD 89
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVTSK 123
E IAHR+GL+PL S +A M+++RDC C G G C C + L+ C S++ +L V
Sbjct: 90 EMIAHRIGLVPLYSMKARRMQYARDC-LCGGSG-CGECQINGELKVSCPSNKHSLQVFMD 147
Query: 124 DLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
L D V PV + ++RG+ ++ L R QEL LR + RK I K HAK+ P
Sbjct: 148 SLKIDDEEVYPV----------SSEERGVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPV 197
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
ATV Y +I +N D L E ++ WVE P +VF D TGQV + D +A + E
Sbjct: 198 ATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDDRTGQVLLADPDACIFCRE 257
Query: 244 VIKKAEAMGKPG--LVEIYAKEDS-----FIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ K K LV + K+D F FTVESTGA+ Q++ +A+EVL++KL+ V
Sbjct: 258 CLLKEPPFNKLAEPLVFVRHKKDKRGYYDFTFTVESTGALPVLQILYDAVEVLRRKLERV 317
Query: 297 R--LSED 301
R L+ED
Sbjct: 318 RDGLTED 324
>gi|58391045|ref|XP_318245.2| AGAP010321-PA [Anopheles gambiae str. PEST]
gi|55236782|gb|EAA13388.2| AGAP010321-PA [Anopheles gambiae str. PEST]
Length = 273
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 172/305 (56%), Gaps = 47/305 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DT+ S+AN+LRRV IAE PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + M++SRDC D C CSVEF L KC+ + T VT+ D
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLDF---CNECSVEFTLDVKCNEEHTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAK 179
L SSD V+P V D D + G I+I+KLR+GQEL+L+A A+KG GK+HAK
Sbjct: 120 LKSSDPRVLP---VTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKAYAKKGFGKEHAK 176
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
W+P V+F Y+P ++ M + W +S T++ D D
Sbjct: 177 WNPTCGVSFEYDP-----DNAMRHTLYPKPDEWPKSEHTELDD-----------DKYEAD 220
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV--R 297
Y+ E+ K + F F VES+GA+K +VL ++VLK KL + +
Sbjct: 221 YNWEL-----------------KPNKFFFNVESSGALKPENIVLMGVQVLKNKLSNLQTQ 263
Query: 298 LSEDT 302
LS +T
Sbjct: 264 LSHET 268
>gi|391329125|ref|XP_003739027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Metaseiulus occidentalis]
Length = 277
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 171/292 (58%), Gaps = 41/292 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P+V I +L ++ KF L DTD S+AN++RRVMIAE PT+AID V++E NSSVL+DE
Sbjct: 3 YANQPRVTITDLSNENVKFVLEDTDLSVANSIRRVMIAETPTMAIDWVQLEANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTSE + M+++RDC D C CSVEF L KC D T VT+ D
Sbjct: 63 FIAHRLGLIPLTSEEIVEHMQYNRDCSCVDF---CTDCSVEFILDVKCTDDATRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV---DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
L S+D VPV D A Y Q+ I+IVKLR+GQE++ ARKG GK+HAKW+
Sbjct: 120 LKSADIRCVPVTSKRRDDTAEY---GQEEDILIVKLRKGQEVKAICYARKGFGKEHAKWN 176
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
P V F Y+P+ N+ + + E+ W S +++ + D + AE YD
Sbjct: 177 PTCGVAFEYDPD---NKFRHTTYPIPEE--WPRSEYSEIAEEDTRS------QAE---YD 222
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
E GKP F F VES+GA+K +V++ ++ LK+KL
Sbjct: 223 PE--------GKPS---------KFFFNVESSGALKPETIVMSGVKQLKKKL 257
>gi|126273908|ref|XP_001387335.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
gi|126213205|gb|EAZ63312.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
Length = 315
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 124/311 (39%), Positives = 170/311 (54%), Gaps = 38/311 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V IRE + D+ F LRD D +MAN++RRVM+AEVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+PL SE ++ +SRDC D C CSV L AKC +D T++V + DL
Sbjct: 69 RLGLVPLVSEGIENLTYSRDCTC---DNYCPKCSVRLELTAKCDTDSTMNVYATDLAKFH 125
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ DP D Q+RG +I KLR+ QELRL IA+KGI K+HAKWSP + V F
Sbjct: 126 NG---SRLGDPVVRDV--QKRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCSAVGFE 180
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P W + T + Y VDA+ E + E
Sbjct: 181 YDP-------------------WNKLKHTDYW---------YEVDADEEWPKSENCEWEE 212
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD--AVRLSEDTVEADD 307
+ AK S+ VE+ G + +++VL +IE L++KL A+ L++++VEA
Sbjct: 213 VPDPDAPFDYKAKPTSYYIDVETVGNLPPNEVVLRSIETLQRKLADIAIELNKESVEASS 272
Query: 308 QFGELGAHMRG 318
G G
Sbjct: 273 TANNGGLTTYG 283
>gi|156551093|ref|XP_001603079.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Nasonia vitripennis]
Length = 276
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 170/297 (57%), Gaps = 44/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL ++ KF++ DT+ S+AN++RRV IAE PT+AID V+IE NS+VL+DE
Sbjct: 3 YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+G+IPL S+ + ++++RDC D C C VEF L KC + T VT+ D
Sbjct: 63 FLAHRIGMIPLISDEVVDRIQYTRDCQCMDF---CPECCVEFTLDVKCSDETTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L SS+ VVPV D Y TD+ I+IVKLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 LKSSEQRVVPVTSKHRDDDANEYGETDE---ILIVKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ M + W +S +++ D GQ D + +
Sbjct: 177 NPTAGVSFEYDP-----DNSMRHTLFPKPDEWPKSEYSELED-----GQ----DEAPFNW 222
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ AK + + F VES+GA+K +V+ I LK KL ++
Sbjct: 223 E-------------------AKPNKYFFNVESSGALKPENIVMMGIAALKNKLSNLQ 260
>gi|260950839|ref|XP_002619716.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
gi|238847288|gb|EEQ36752.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
Length = 307
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 172/311 (55%), Gaps = 42/311 (13%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+ S + P+V IR+ + D+ F LR D S+AN+LRR M++EVPT+AIDLVEI+VN+S
Sbjct: 1 MEVDSAESGPRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL DE ++HRLGLIPL SE ++ +SRDC D C CSV+ L AKC SD T++V
Sbjct: 61 VLADELLSHRLGLIPLNSEGIENLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMNV 117
Query: 121 TSKDLYSSDHSVVPVDFV--DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
S DL + D V DPA RG +I KLR+ QELRL IA+KGI K+HA
Sbjct: 118 YSSDLAKFHNGSKLGDPVIRDPA-------HRGPLICKLRKHQELRLTCIAKKGIAKEHA 170
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
KWSP A + F Y+P W + T + Y DAEA
Sbjct: 171 KWSPCAAIGFEYDP-------------------WNKLKHTDFW---------YEDDAEAE 202
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD--AV 296
+ EA + AK +F VE+ G++ +++V+ IE L+ KL AV
Sbjct: 203 WPKSANCEWEEAPDPEAPFDYNAKPANFYVDVETVGSLAPNEVVVRGIETLQLKLAGIAV 262
Query: 297 RLSEDTVEADD 307
L++DTVEA+D
Sbjct: 263 ELNKDTVEAND 273
>gi|242011218|ref|XP_002426352.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510429|gb|EEB13614.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 275
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 169/298 (56%), Gaps = 46/298 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L D+ KF++ DT+ S+AN++RRV IAE PT+AID V++E NS+VL DE
Sbjct: 3 YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FI+HR+GLIPLTS+ + ++++RDC D C CSVEF L KC D T VT+ D
Sbjct: 63 FISHRVGLIPLTSDEVVDRIQYTRDCTCLDF---CPECSVEFTLDVKCTDDHTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L SSD V+PV D + Y D+ I+IVKLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 LKSSDPRVLPVTSRHREDDTSEYGEADE---ILIVKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA-YT 239
+P A V F Y+P ++ M + W +S T++ D EA Y
Sbjct: 177 NPTAGVCFEYDP-----DNSMRHTLYPKPDEWPKSEYTELDD----------TQCEAPYN 221
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
++ A+ + F F VES GA++ +V+ + VLK KL ++
Sbjct: 222 WE-------------------ARPNKFYFNVESVGALRPENIVMMGVAVLKNKLSNLQ 260
>gi|242247264|ref|NP_001156090.1| DNA-directed RNA polymerase II polypeptide-like [Acyrthosiphon
pisum]
gi|239789163|dbj|BAH71223.1| ACYPI001769 [Acyrthosiphon pisum]
Length = 273
Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 165/297 (55%), Gaps = 44/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D KF++ DTD S+AN+LRRV IAE PT+AID V+++ NS+VL+DE
Sbjct: 3 YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIA R+GLIPLTS+ + +++SRDC D C CSVEF+L KC + T VT+ D
Sbjct: 63 FIASRIGLIPLTSDEIVDRLQYSRDCTCSDF---CHDCSVEFNLHVKCSEEMTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S++ VVP V DS + G I+I+KLR+GQEL++RA A+KG GK+HAKW
Sbjct: 120 LVSNNPRVVP---VTSRNQDSDINEYGEKDDILIIKLRKGQELKIRAFAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P V+F Y+P ++ M + W +S +++ N Q
Sbjct: 177 NPTTGVSFEYDP-----DNTMRHTLFPKPDEWPKSEYSEL-----NEDQ----------- 215
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
GL AK + F F VES G++K +VL + LK KL ++
Sbjct: 216 ------------HEGLYNWRAKPNKFFFNVESCGSLKPENIVLMGVAALKNKLSNLQ 260
>gi|448089925|ref|XP_004196939.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|448094289|ref|XP_004197970.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359378361|emb|CCE84620.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359379392|emb|CCE83589.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
Length = 308
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 167/300 (55%), Gaps = 38/300 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V IR+ D+ F L+D D + ANALRRVM+AEVPT+AIDLV+I+VN+SVL DEF++H
Sbjct: 11 PQVTIRQTDKDHVDFILKDADLATANALRRVMLAEVPTLAIDLVDIDVNTSVLADEFLSH 70
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE ++ +SRDC D C CSV+ L AKC +D T++V + DL
Sbjct: 71 RLGLIPLNSEGIENLSYSRDCTC---DQYCANCSVKLELTAKCDTDSTMNVYASDLAKFH 127
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ DP DS QQRG +I KLR+ QELRL IA+KGI K+HAKWSP A + F
Sbjct: 128 NG---SKLGDPVIRDS--QQRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCAAIGFE 182
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E+ + + N D +A
Sbjct: 183 YDPWN----------KLKHTDFWYENEADEEWPKSANCDWEEAPDPDA------------ 220
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV--RLSEDTVEADD 307
+ AK +F VE+ G++ +++VL +IE L+ KL + L++DT+E +
Sbjct: 221 ------PFDYKAKPSTFYVDVETVGSLPPNEVVLKSIETLQLKLAGISMELNKDTIEGSN 274
>gi|221486200|gb|EEE24470.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii GT1]
Length = 484
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 169/307 (55%), Gaps = 20/307 (6%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G S P + ++E+ + KF L + D S+AN LRRVMI+EVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
+DE+I+HRLGL+P+ S R DCD D C CSV++ L C D L VT
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259
Query: 123 KDLYSSD---HSVVPVDFVD-----PAGYDSTDQQR---GIIIVKLRRGQELRLRAIARK 171
+D+ + + S+ F+D P Q++ GI IVKLR+ Q + +R A K
Sbjct: 260 RDIVADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATK 319
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI--DPNTGQ 229
GIGK HAKWSP AT ++ +EPEI EDL+ E K+ S P +VF D TG
Sbjct: 320 GIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGG 379
Query: 230 VYVVDAE---AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
V+ E Y D+ KA+ +G LV + E F FTVESTG + A Q+V A
Sbjct: 380 TGVLRVENKMNCIYCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAF 439
Query: 287 EVLKQKL 293
++L K+
Sbjct: 440 DILLNKV 446
>gi|294892119|ref|XP_002773904.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
gi|239879108|gb|EER05720.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
Length = 336
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 175/313 (55%), Gaps = 16/313 (5%)
Query: 9 FPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
P +++ L D KF + + + ++ANALRR+MIAEVPT+AID V IE NSS L DEF+A
Sbjct: 12 MPVIEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVA 71
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
HRLGL+P+ S+ S +DC C C+V++ L DVT D+
Sbjct: 72 HRLGLLPINSKEVDSYSDPKDCQCY---SSCPNCTVKYTLDVIAEDHGVTDVTHLDIQPV 128
Query: 129 DHSV--------VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
D +PV D + +++ GI+I KLRR Q+L + ARKG+GK HAKW
Sbjct: 129 DQGTSIPESRRPLPVPLWDRTKTEEENRRNGIVIAKLRRNQQLTMHMEARKGVGKMHAKW 188
Query: 181 SPAATVTFMYEPEIHINEDL-MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+P TV YEP I I+ + E LS+ E+++ V S P +V D+D ++ VV +
Sbjct: 189 NPTGTVAIRYEPVITIDRAIEYEKLSVAERKAIVRSCPKRVLDLD-AADRIQVVRKDLCD 247
Query: 240 YDDEVIKKAEAMGKP-GLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRL 298
+ DE + KA K G++ + + D FTVESTGA +V+ AI+V K+K +RL
Sbjct: 248 FCDECVTKANYDFKAKGMITVKQRTDVVHFTVESTGARPPEDIVMAAIKVFKEKW--IRL 305
Query: 299 SEDTVEADDQFGE 311
ED + + +FG+
Sbjct: 306 HEDLGKWEQEFGQ 318
>gi|340976001|gb|EGS23116.1| RNA polymerase II subunit 3-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 344
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 158/290 (54%), Gaps = 46/290 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P VKI + KFEL + D S AN+LRRVM+AE+PTIAIDLVEIEVN+SVL DEFIAH
Sbjct: 17 PAVKISQADSTRVKFELSNADLSFANSLRRVMLAEIPTIAIDLVEIEVNTSVLADEFIAH 76
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL +E + +SRDCD DG CE CSV L AKC D+ + V S+DL
Sbjct: 77 RLGLIPLNAEGVDQLLYSRDCDC---DGYCEQCSVRLSLHAKCTGDENMHVFSRDLVPVG 133
Query: 130 HSV-----VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
V P+ DP G G +I+KLR GQE++L IA+KGI K+HAKW+P+A
Sbjct: 134 ERVNQNLGTPI-INDPDGL-------GPLILKLRPGQEIKLECIAKKGIAKEHAKWAPSA 185
Query: 185 TVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
+ F Y+P ++ DL + K W S + ++ P G E + YD
Sbjct: 186 AIGFEYDPHNKLHHLDLW--YEQDPKAEWPPSEYAE-WEEPPQEG-------EPFDYD-- 233
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A + F F VES G + +V I+VL+QKL
Sbjct: 234 -----------------AVPNRFYFNVESAGPLPPDAIVQEGIKVLQQKL 266
>gi|255729262|ref|XP_002549556.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132625|gb|EER32182.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 327
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 166/304 (54%), Gaps = 45/304 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V IR + D+ F LR+ D S+AN++RR M+AEVPT++IDLVEIE N+SVL DEF++H
Sbjct: 9 PGVTIRTAEKDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSH 68
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE + +SRDC D C CSV L A C ++ T++V + DL +
Sbjct: 69 RLGLIPLVSEGIKDLTYSRDCTC---DNYCTKCSVTLQLLASCTAETTMNVYASDLLKTT 125
Query: 130 HSVV----PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
H+ PV F DP + RG II KLR+ QEL L IA+KGI K+HAKWSP A
Sbjct: 126 HTGSKLGDPV-FRDP-------RNRGPIICKLRKDQELALTCIAKKGIAKEHAKWSPCAA 177
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
V F Y+P W + T + Y VDAE+
Sbjct: 178 VGFEYDP-------------------WNKLKHTDYW---------YEVDAESEWPKSRNC 209
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA--VRLSEDTV 303
EA + AK ++F F VE+ G + +++V+ AIE L+ KL A V L+ +++
Sbjct: 210 DWEEAPDPEAKFDYKAKPNTFYFDVETVGNLPPNEVVVRAIETLQNKLGALTVELNSESI 269
Query: 304 EADD 307
E +D
Sbjct: 270 EGND 273
>gi|71663692|ref|XP_818836.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma cruzi strain
CL Brener]
gi|70884108|gb|EAN96985.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 363
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 168/301 (55%), Gaps = 26/301 (8%)
Query: 11 KVKIRELKD------DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
KVKI + K + +F+L + D S AN LRRVM+AEVP + I+ V I N+SVL D
Sbjct: 28 KVKILDCKKHEHSAGETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPD 87
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVTSK 123
E IAHR+GL+PL S +A M+++RDC C G G C C + L+ C S++ +L V
Sbjct: 88 EMIAHRIGLVPLYSMKARRMQYARDC-LCGGSG-CGECQINGELKVSCPSNKHSLQVFMD 145
Query: 124 DLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
L D V PV + ++ G+ ++ L R QEL LR + RK I K HAK+ P
Sbjct: 146 SLKIDDEEVYPV----------SSEEHGVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPV 195
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
ATV Y +I +N D L E ++ WVE P +VF D TGQV + D +A + E
Sbjct: 196 ATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDDRTGQVLLADPDACIFCRE 255
Query: 244 VIKKAEAMGKPG--LVEIYAKEDS-----FIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ K K LV + K+D F FTVESTGA+ Q++ +A+EVL++KL+ V
Sbjct: 256 CLLKEPPFNKLAEPLVFVRHKKDKRGYHDFTFTVESTGALPVLQILYDAVEVLRRKLERV 315
Query: 297 R 297
R
Sbjct: 316 R 316
>gi|67624207|ref|XP_668386.1| conjugation stage-specific protein [Cryptosporidium hominis TU502]
gi|54659581|gb|EAL38151.1| conjugation stage-specific protein [Cryptosporidium hominis]
Length = 355
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 170/315 (53%), Gaps = 31/315 (9%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R PK +I EL + +F L +TD SMAN LRR+++AE+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
HR+GLIPL S F D C+ +C CSVE+ L C T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124
Query: 128 -SDHSVVPVDFVDPAGYDSTD-QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
+ ++VP+ P DS D GI+I KL GQ + +R A KGIGK HAKW P +
Sbjct: 125 VATSTLVPMPV--PKKDDSVDGMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSV 182
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ---------------- 229
TF E ++ IN L +L+L++++ V P VF + NT +
Sbjct: 183 ATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGNTSKTEYALNKNSTYSTKTK 242
Query: 230 ------VYVVDAEAYTYDDEVIKKAEAMG--KPGLVEIYAKEDSFIFTVESTGAIKASQL 281
+ VV +++ + +E + + G P L+ + K D F F VESTGA+ +
Sbjct: 243 TEELPDLEVVSSKSCIFCNECVNLTKNYGYINPALIRVDTKPDKFHFLVESTGALPVESI 302
Query: 282 VLNAIEVLKQKLDAV 296
V A E+L++KL+ +
Sbjct: 303 VELAFEILQEKLNTL 317
>gi|307175611|gb|EFN65520.1| DNA-directed RNA polymerase II subunit RPB3 [Camponotus floridanus]
Length = 276
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 170/297 (57%), Gaps = 44/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L ++ KF++ DT+ S+AN++RRV IAE PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+G+IPL S+ + ++F+RDC D C CSVEF L KC DQT VT+ D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQFTRDCQCMDF---CPECSVEFTLDVKCIEDQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
SSD V+PV D + Y TD+ I+IVKLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDE---ILIVKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ M + W +S T++ + D +
Sbjct: 177 NPTAGVSFEYDP-----DNAMRHTLYPKPDEWPKSEYTELEE-----------DQYEAPF 220
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ E AK + + F VES+GA+K +V+ I LK KL ++
Sbjct: 221 NWE-----------------AKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQ 260
>gi|354547085|emb|CCE43818.1| hypothetical protein CPAR2_500440 [Candida parapsilosis]
Length = 317
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/314 (38%), Positives = 169/314 (53%), Gaps = 60/314 (19%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
++ P + IRE + D F L + D S+ANALRR M+AEVPT+AIDLVEI+VN+SVL DEF
Sbjct: 4 EQGPSITIRERELDRVDFVLGNVDLSVANALRRTMLAEVPTLAIDLVEIDVNTSVLADEF 63
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY 126
+AHRLGLIPL SE ++++SRDC D C CSV L AKC +D T++V + DL+
Sbjct: 64 LAHRLGLIPLVSENIENLKYSRDCTC---DNYCPQCSVTLELTAKCDTDSTMNVYASDLF 120
Query: 127 SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
P P D +RG II KLR+ QELRL IA+KGI K+HAKWSP A +
Sbjct: 121 KPPS---PYSLGTPVYRDH--MERGPIICKLRKHQELRLTCIAKKGIAKEHAKWSPCAAI 175
Query: 187 TFMYEP-----------EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA 235
F Y+P E+ NE+ +S + + ++ + P + FD
Sbjct: 176 GFEYDPWNKLKHTDYWYEVDANEEWPKSKNCDWEE---QPDPEEKFDYK----------- 221
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
AK + F F VE+ G++ + +V+ AI+ L++KL +
Sbjct: 222 -------------------------AKPNDFYFDVETVGSLAPNDVVIQAIKTLQEKLAS 256
Query: 296 V--RLSEDTVEADD 307
V L +D VE D
Sbjct: 257 VVIELDKDKVEGGD 270
>gi|237834427|ref|XP_002366511.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|211964175|gb|EEA99370.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|221501508|gb|EEE27282.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii VEG]
Length = 484
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 169/307 (55%), Gaps = 20/307 (6%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G S P + ++E+ + KF L + D S+AN LRRVMI+EVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
+DE+I+HRLGL+P+ S R DCD D C CSV++ L C D L VT
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259
Query: 123 KDLYSSD---HSVVPVDFVD-----PAGYDSTDQQR---GIIIVKLRRGQELRLRAIARK 171
+D+ + + S+ F+D P Q++ GI IVKLR+ Q + +R A K
Sbjct: 260 RDIVADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATK 319
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI--DPNTGQ 229
GIGK HAKWSP AT ++ +EPEI EDL+ E K+ S P +VF D TG
Sbjct: 320 GIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGG 379
Query: 230 VYVVDAE---AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
V+ E + D+ KA+ +G LV + E F FTVESTG + A Q+V A
Sbjct: 380 TGVLRVENKMNCIFCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAF 439
Query: 287 EVLKQKL 293
++L K+
Sbjct: 440 DILLNKV 446
>gi|66517558|ref|XP_624836.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
mellifera]
gi|380029804|ref|XP_003698555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
florea]
Length = 276
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 169/297 (56%), Gaps = 44/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L ++ KF++ DT+ S+AN++RRV IAE PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+G+IPL S+ + ++++RDC D C CSVEF L KC DQT VT+ D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDF---CPECSVEFTLDVKCTEDQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
SSD V+PV D + Y TD+ I+IVKLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDE---ILIVKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ M + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNAMRHTLFPKPDEWPKSEYSEL-------------------- 211
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ + P E AK + + F VES+GA+K +V+ I LK KL ++
Sbjct: 212 ------EEDQYEAPFNWE--AKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQ 260
>gi|350400985|ref|XP_003486021.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
impatiens]
Length = 276
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 169/297 (56%), Gaps = 44/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L ++ KF++ DT+ S+AN++RRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+G+IPL S+ + ++++RDC D C CSVEF L KC DQT VT+ D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDF---CPECSVEFTLDVKCTEDQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
SSD V+PV D + Y TD+ I+IVKLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDE---ILIVKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ M + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNSMRHTLFPKPDEWPKSEYSEL-------------------- 211
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ + P E AK + + F VES+GA+K +V+ I LK KL ++
Sbjct: 212 ------EEDQYEAPFNWE--AKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQ 260
>gi|149237498|ref|XP_001524626.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452161|gb|EDK46417.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 336
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 168/312 (53%), Gaps = 42/312 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V +R+ + D F L+ D SMAN+LRR M+AEVPT+AIDLVEI+VN+SVL DEF+AH
Sbjct: 7 PSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S+ ++ +SRDC AC D C CSV L AKC SD T++V + DL +
Sbjct: 67 RLGLIPLDSQGIENLLYSRDC-AC--DNYCSKCSVTLELTAKCDSDSTMNVCASDLLKLN 123
Query: 130 HSVVPVDFV-DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
++ + DP Q RG +I KLRR QE+RL IA+KGI K+HAKWSP A V F
Sbjct: 124 TELLGKPIIRDP-------QNRGPLICKLRRHQEIRLTCIAKKGIAKEHAKWSPCAAVGF 176
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y+P W + T + Y VDA E +
Sbjct: 177 EYDP-------------------WNKLKHTDYW---------YEVDAAEEWPKSENCRLE 208
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV--RLSEDTVEAD 306
EA + A F F VE+ G + +++VL ++ L+ KL A+ L++ VE +
Sbjct: 209 EAPDPDAKFDYNAVPSKFYFDVETVGNLPPNEVVLQGVQTLQAKLAAIALELTKSNVEGN 268
Query: 307 D-QFGELGAHMR 317
+ Q G + R
Sbjct: 269 NAQTGGFTTYGR 280
>gi|383848177|ref|XP_003699728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Megachile rotundata]
Length = 276
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 169/297 (56%), Gaps = 44/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L ++ KF++ DT+ S+AN++RRV IAE PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+G+IPL S+ + ++++RDC D C CSVEF L KC DQT VT+ D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDF---CPECSVEFTLDVKCTEDQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
SSD V+PV D + Y TD+ I+IVKLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDE---ILIVKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ M + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNSMRHTLFPKPDEWPKSEYSEL-------------------- 211
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ + P E AK + + F VES+GA+K +V+ I LK KL ++
Sbjct: 212 ------EEDQYEAPFNWE--AKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQ 260
>gi|190348772|gb|EDK41297.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 165/299 (55%), Gaps = 38/299 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V IR+ + D+ F L+D D SMAN++RR M+AEVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LG+IPL SE ++ +SRDC D C CSV+ L AKC SD T+ V + DL +
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMSVYATDLAKFHN 125
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
DP D QRG +I KLR+ QELRL IA+KGI K+HAKWSP A + F Y
Sbjct: 126 G---SKLGDPVVRDH--HQRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCAAIGFEY 180
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
+P W + T + Y +DA+ + EA
Sbjct: 181 DP-------------------WNKLKHTDYW---------YEIDADKEWPKSANCEWEEA 212
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD--AVRLSEDTVEADD 307
+ AK +F VE+ G + +++VL IE L+ KL A+ L++D++EA +
Sbjct: 213 PDPDAPFDYTAKPSTFYMDVETVGNLPPNEVVLKGIETLQLKLAGIAMELNKDSIEASN 271
>gi|401404694|ref|XP_003881797.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
gi|325116211|emb|CBZ51764.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
Length = 514
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 167/302 (55%), Gaps = 22/302 (7%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P + ++E+ +F L + D S+ANALRRVMIAEVPT+AIDLV + N+SVL+DE+I+H
Sbjct: 162 PSIVVKEVSPSKVQFLLENCDVSIANALRRVMIAEVPTLAIDLVTVYENTSVLHDEYISH 221
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+P+ S R DCD D C CSV++ L C +D L VT +D+ + +
Sbjct: 222 RLGLLPIDSTRVAEFVNREDCDCAD---HCPRCSVQYALDVVCQNDSLL-VTHRDIVADN 277
Query: 130 H----SVVP-VDFVD-----PAGYDSTDQQR---GIIIVKLRRGQELRLRAIARKGIGKD 176
++ P F+D P QQ+ GI IVKLRR Q + +R A KG+GK
Sbjct: 278 AGRGTALAPGGGFLDLSCPMPVPLPREMQQKEMDGIPIVKLRRNQSVNMRMTAIKGMGKL 337
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-----GQVY 231
HAKWSP AT ++ +EPEI ED + E K+ S P VF +T G +
Sbjct: 338 HAKWSPVATASYKFEPEISFEEDQLARAPAEVKRQIAASCPRDVFAFIDDTATGGNGMLR 397
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V + Y D+ KA+ +G LV + E F FTVESTG + A Q+V A ++L
Sbjct: 398 VENKINCIYCDQCKIKAQDLGYRKLVRVEPNERKFYFTVESTGVMPAEQIVEMAFDILLN 457
Query: 292 KL 293
K+
Sbjct: 458 KV 459
>gi|427778091|gb|JAA54497.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 268
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 160/291 (54%), Gaps = 47/291 (16%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DTD S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M++SRDC D L KC +QT VT+ D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADXXXT---------LDVKCLDEQTRHVTTAD 113
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L SSD VVPV + + I+IVKLR+GQE++ RA A+KG GK+HAKW+P
Sbjct: 114 LKSSDPRVVPVTSRHKDDTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 173
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P ++ + + W +S YT DE
Sbjct: 174 GVAFEYDP-----DNAFRHTTYPRPEEWPKSE---------------------YTELDED 207
Query: 245 IKKAE--AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+AE + GKP + F + VES+GA+K +VL+ + VLK+KL
Sbjct: 208 HAEAEFQSEGKP---------NKFYYNVESSGALKPENIVLSGLSVLKKKL 249
>gi|322793846|gb|EFZ17186.1| hypothetical protein SINV_07940 [Solenopsis invicta]
Length = 325
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 176/315 (55%), Gaps = 31/315 (9%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L ++ KF++ DT+ S+AN++RRV IAE PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+G+IPL S+ + ++++RDC D C CSVEF L KC DQT VT+ D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDF---CPECSVEFTLDVKCTEDQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
SSD V+PV + + Y TD+ I+IVKLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 FKSSDPRVLPVTSRHREDEASEYGETDE---ILIVKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLM---------ESLSLEEKQSWVESSPTKVFDIDPNTGQVY 231
+P A V+F Y+P+ + L E LEE Q E + +I T ++
Sbjct: 177 NPTAGVSFEYDPDNSMRHTLYPKPDEWPKSEYTELEEDQ--CEYNLFYERNIVMMTSEIK 234
Query: 232 VVDA---------EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
++ + +I + AK + + F VES+GA+K +V
Sbjct: 235 FCYGILIWLKQFTSIFSIGENLIFYMHHLSYEAPFNWEAKPNKYYFNVESSGALKPENIV 294
Query: 283 LNAIEVLKQKLDAVR 297
+ I LK KL ++
Sbjct: 295 MMGIAALKNKLSNLQ 309
>gi|344305493|gb|EGW35725.1| hypothetical protein SPAPADRAFT_58923 [Spathaspora passalidarum
NRRL Y-27907]
Length = 302
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 166/300 (55%), Gaps = 38/300 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V IRE + D+ F L++ + AN++RR M+AEVPT+AIDLVEI+VN+SVL DEFIAH
Sbjct: 10 PSVTIREAERDHVNFILKNVSLASANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFIAH 69
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE ++ +SRDC D C CSV L AKC SD T+ V + DL
Sbjct: 70 RLGLIPLVSEGIENLTYSRDCTC---DNYCSKCSVRLELTAKCDSDSTMSVYASDLAKFH 126
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ DP D+ Q RG +I KLR+ QELR+ IA+KGI K+HAKWSP A V F
Sbjct: 127 NG---SRLGDPVIRDA--QGRGSLICKLRKHQELRIVCIAKKGIAKEHAKWSPCAAVGFE 181
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P W + T + Y +DA+ E + E
Sbjct: 182 YDP-------------------WNKLKHTDYW---------YEIDADKEWPKSENCEWEE 213
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD--AVRLSEDTVEADD 307
+ AK +F F VE+ G + +++V+ +IE L++KL A+ L++++VEA +
Sbjct: 214 MPDPEAPFDYTAKPTNFYFDVETVGNLPPNEVVVRSIETLQRKLADIAIELNKESVEASN 273
>gi|320586301|gb|EFW98980.1| RNA polymerase 2 subunit 3 [Grosmannia clavigera kw1407]
Length = 362
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 166/300 (55%), Gaps = 46/300 (15%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
DG S+ P VKI + + KFEL + D ++AN+LRRV+IAEVPTIAID+VE+E N+SV
Sbjct: 10 DGESFG--PAVKISQADVERVKFELTNVDLAIANSLRRVIIAEVPTIAIDIVEVEDNTSV 67
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
L DEFIAHRLGL+PL S+ A + +SRDCD + CE CS++ L+AKC SD+ + V
Sbjct: 68 LADEFIAHRLGLVPLNSKNADDVVYSRDCDC---EQYCELCSIKLRLQAKCTSDEVMKVY 124
Query: 122 SKDLYSSDHSVVPVDFVDPAGYDSTDQQR-----GIIIVKLRRGQELRLRAIARKGIGKD 176
++DL VD P + T R G++I KLRRGQEL + IA+KGI K+
Sbjct: 125 ARDLV--------VDPARPNQWVGTPVIRDPDGLGVMIAKLRRGQELNMTCIAKKGIAKE 176
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAKWSP A V F Y+P ++ M W E D E
Sbjct: 177 HAKWSPTAAVGFEYDPHNKLHHMDM----------WYEQD----------------ADKE 210
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
D+ +++ G+P + A F + VES G ++ +V N I+ L+QKL A+
Sbjct: 211 WPKSDNARLEEPAQEGEP--FDYDATPGRFYYDVESIGQMEPDAIVQNGIKTLQQKLAAL 268
>gi|66362260|ref|XP_628094.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
gi|46227424|gb|EAK88359.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
Length = 355
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 177/338 (52%), Gaps = 33/338 (9%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R PK +I EL + +F L +TD SMAN LRR+++AE+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
HR+GLIPL S F D C+ +C CSVE+ L C T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124
Query: 128 -SDHSVVPVDFVDPAGYDSTD-QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
+ ++VP+ P DS D GI+I KL GQ + +R A KGIGK HAKW P +
Sbjct: 125 VATSTLVPMPV--PKKDDSVDGMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSV 182
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ---------------- 229
TF E ++ IN L +L+L++++ V P VF + +T +
Sbjct: 183 ATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSKTEYALNKNSAYSTKTK 242
Query: 230 ------VYVVDAEAYTYDDEVIKKAEAMG--KPGLVEIYAKEDSFIFTVESTGAIKASQL 281
+ VV +++ + +E + + G P L+ + K D F F VESTGA+ +
Sbjct: 243 TEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDKFHFLVESTGALPVESI 302
Query: 282 VLNAIEVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 319
V A E+L++KL+ LS ++ L + GG
Sbjct: 303 VELAFEILQEKLNT--LSRGVARSETAQSGLDTNGSGG 338
>gi|410983639|ref|XP_003998146.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3, partial
[Felis catus]
Length = 260
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 118/280 (42%), Positives = 166/280 (59%), Gaps = 44/280 (15%)
Query: 19 DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS 78
D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS
Sbjct: 1 DENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTS 60
Query: 79 ERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF 137
+ + +++SRDC C + C CSVEF L +C+ DQT VTS+DL S+ V+PV
Sbjct: 61 DDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTS 117
Query: 138 ----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPE 193
DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+P
Sbjct: 118 RNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDP- 173
Query: 194 IHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGK 253
++ + + + W +S +++ +DE + GK
Sbjct: 174 ----DNALRHTVYPKPEEWPKSEYSEL-------------------DEDESQAPYDPNGK 210
Query: 254 PGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
P + F + VES G+++ +VL+A+ LK+KL
Sbjct: 211 P---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 241
>gi|50418977|ref|XP_458009.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
gi|49653675|emb|CAG86069.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
Length = 311
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/300 (38%), Positives = 162/300 (54%), Gaps = 38/300 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V IR ++ F L+D D +MAN++RR M+AEVPT+AIDLVEIEVN+SVL DEFI+H
Sbjct: 11 PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE ++ +SRDC D C CSV+ L AKC +D T+ V S DL
Sbjct: 71 RLGLIPLNSEGIDNLSYSRDCTC---DQYCANCSVKLELTAKCDTDSTMSVYSSDLAKFH 127
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ DP D + ++G +I KLR+ QELR+ IA+KGI K+HAKWSP + F
Sbjct: 128 NG---SKLGDPVARD--NHRKGPLICKLRKHQELRITCIAKKGIAKEHAKWSPCGAIGFE 182
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E + + N DA+A
Sbjct: 183 YDPWN----------KLKHTDYWYEDDADEEWPKSANCDWEEAPDADA------------ 220
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV--RLSEDTVEADD 307
+ AK +F VE+ G + ++++L IE L+ KL + L++D++EA +
Sbjct: 221 ------PFDYKAKPSTFYMDVETVGNLPPNEVILKGIETLQLKLAGISMELNKDSIEASN 274
>gi|85082680|ref|XP_956964.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|7801032|emb|CAB91428.1| probable DNA-directed RNA polymerase II chain RPB3 [Neurospora
crassa]
gi|28918046|gb|EAA27728.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|336468167|gb|EGO56330.1| hypothetical protein NEUTE1DRAFT_83471 [Neurospora tetrasperma FGSC
2508]
gi|350289588|gb|EGZ70813.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 337
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 158/289 (54%), Gaps = 44/289 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P VKI + + KFEL +T+ S AN+LRRVM+AE+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL +E + +SRDCD D CE CSV +L AKC D + V ++DL
Sbjct: 76 RLGLIPLNAEGIEQLLYSRDCDC---DEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVG 132
Query: 130 HSV-----VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
V P+ DP G +G +I+KLR GQE++L+ IA+KGI K+H+KW+P+A
Sbjct: 133 DRVNQVLGSPI-INDPEG-------QGPLILKLRHGQEIKLQCIAKKGIAKEHSKWAPSA 184
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
+ F Y+P + + L L W E P K + Y +E
Sbjct: 185 AIGFEYDP-----HNKLHHLDL-----WYEQDPKKEW------------PPSEYADWEEP 222
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
++ E + A F + VE+ G I +V I+V++QKL
Sbjct: 223 PQEGEPF------DYDAVPQRFYYNVETAGPIPPDAIVTEGIKVIQQKL 265
>gi|91094813|ref|XP_970635.1| PREDICTED: similar to DNA-directed RNA polymerase II subunit
[Tribolium castaneum]
gi|270006567|gb|EFA03015.1| hypothetical protein TcasGA2_TC010438 [Tribolium castaneum]
Length = 274
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 165/297 (55%), Gaps = 44/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L DD KF + DTD S+AN++RRV+IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + +++ RDC D C CSVEF L KC D T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVQRLQYPRDCICTDF---CHECSVEFTLDVKCTDDHTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L SSD V+P + + Y TD+ I+I+KLR+GQEL+++A A+KG GK+HAKW
Sbjct: 120 LKSSDPRVIPATSKHRDDESSEYGDTDE---ILIIKLRKGQELKVKAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ M + W +S ++ +D + Y
Sbjct: 177 NPTAGVAFEYDP-----DNAMRHTLFPKPDEWPKSEYSE-------------LDEDQYEA 218
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
D K + F F VE+ GA+K +V+ + +LK KL ++
Sbjct: 219 D---------------FNWELKPNKFYFNVEAAGALKPENIVIMGVAMLKDKLSNLQ 260
>gi|367035840|ref|XP_003667202.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
gi|347014475|gb|AEO61957.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
Length = 337
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 164/297 (55%), Gaps = 42/297 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P VKI + KFEL++ D S AN+LRRVM+AE+PTIAIDLVEIE NSSVL DEFI+H
Sbjct: 16 PVVKISQADSVRVKFELQNADLSFANSLRRVMLAEIPTIAIDLVEIEENSSVLADEFISH 75
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL +E ++ ++RDCD DG CE CSV L AKC ++ + V ++DL +
Sbjct: 76 RLGLIPLNAEGVDNLLYARDCDC---DGCCEHCSVRLTLHAKCTGEENMHVFARDLVPTG 132
Query: 130 ---HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
+ V+ V+ A + G +I+KLR GQE++L IA+KGI K+HAKW+P+A +
Sbjct: 133 DRINQVLGTPIVNDA------EGLGPLILKLRPGQEIKLECIAKKGIAKEHAKWAPSAAI 186
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
F Y+P L W ES P AE + +
Sbjct: 187 GFEYDPHN----------KLRHTDYWYESDPK----------------AEWPPSEYAAWE 220
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV--RLSED 301
+ G+P + A + F F VE+ GA+ +V I+VL+QKL + L+ED
Sbjct: 221 EPPQEGEP--FDYDAVPNRFYFNVETAGALPPDVIVSEGIKVLQQKLAGLIHELAED 275
>gi|429857950|gb|ELA32787.1| RNA polymerase ii subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 340
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 169/300 (56%), Gaps = 43/300 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P++KI + + F+L + D S AN+LRRV+ AEVPTIAIDLVEIE N+SVL DEFIAH
Sbjct: 15 PQIKISGADNIHVNFDLSNCDLSFANSLRRVIQAEVPTIAIDLVEIEANTSVLADEFIAH 74
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL---- 125
RLGLIPL S+ S+ +SRDCD + C+ CSV+ L A+C SD+T+ V + DL
Sbjct: 75 RLGLIPLHSKDVNSLLYSRDCDC---EQYCDNCSVKLTLHARCSSDETMKVYASDLIVDS 131
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
+ + +V +DP G +G +I KLR+GQEL+L IA+KGI K+HAKW P A
Sbjct: 132 FRQNGTVGNPVIMDPEG-------QGSLIAKLRKGQELKLSCIAKKGIAKEHAKWMPTAA 184
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
V F Y+P ++ L + K W ES K+ D P G EA+ YD
Sbjct: 185 VGFEYDPHNKLHH-LDMWYEEDAKAEWPESKYAKMED-PPQEG-------EAFDYD---- 231
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEA 305
A + F F VE G+++ Q++ I+++++K+ A+ L T EA
Sbjct: 232 ---------------AVPEKFYFEVEGVGSLEPDQIIQEGIKIIQEKM-ALLLHMLTGEA 275
>gi|332376707|gb|AEE63493.1| unknown [Dendroctonus ponderosae]
Length = 275
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 167/297 (56%), Gaps = 44/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L D+ KF + DTD S+AN++RR++IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITDLTDENVKFYVEDTDLSVANSIRRILIAETPTLAIDWVKLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+GLIPL S+ + +++ RDC D C+ CSVEF L KC DQT VT+ D
Sbjct: 63 FLAHRIGLIPLISDEVVQRLQYPRDCICTDF---CQECSVEFTLDVKCTDDQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L SSD V+P D Y TD+ I+IVKLR+GQEL++RA A+KG GK+HAKW
Sbjct: 120 LKSSDPRVIPAPSKHRDDDSNDYGETDE---ILIVKLRKGQELKIRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P V F Y+P ++ M + W +S T++ D D +
Sbjct: 177 NPTCGVAFEYDP-----DNAMRHTLFPKPDEWPKSEYTELDD-----------DQYEAPF 220
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ E+ K + F + VE+ G ++ +V+ + +LK+KL ++
Sbjct: 221 NWEL-----------------KPNKFYYNVEAAGQLRPENIVIMGVGMLKEKLSNLQ 260
>gi|448514979|ref|XP_003867217.1| RNA polymerase II subunit B44 [Candida orthopsilosis Co 90-125]
gi|380351556|emb|CCG21779.1| RNA polymerase II subunit B44 [Candida orthopsilosis]
Length = 317
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 168/311 (54%), Gaps = 39/311 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P + IRE ++D F L + D S+ANALRR M+AEVPT+AIDLVEI+VN+SVL DEF+AH
Sbjct: 7 PSITIREQEEDRVDFVLGNVDLSVANALRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE ++++SRDC D C CSV L AKC +D T++V + DL+
Sbjct: 67 RLGLIPLNSENIETLKYSRDCTC---DNYCPKCSVTLELTAKCDTDSTMNVYASDLFKLA 123
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ +P D D RG II KLR+ QELRL IA+KGI K+HAKWSP A + F
Sbjct: 124 NG---SSLGNPVVRDQAD--RGSIICKLRKHQELRLTCIAKKGIAKEHAKWSPCAAIGFE 178
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E ++ + N D E +K +
Sbjct: 179 YDP----------WNKLKHTDYWYEVDASEEWPKSKNCDWEEQPDPE---------EKFD 219
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA--VRLSEDTVEADD 307
KP + F F VE+ G + + +VL ++ L+ KL + + L ++ VE +
Sbjct: 220 YKAKP---------NDFYFDVETVGNLPPNDVVLQSVNTLQTKLASIVIELDKERVEGSN 270
Query: 308 -QFGELGAHMR 317
Q G ++ R
Sbjct: 271 VQDGAFTSYGR 281
>gi|326433417|gb|EGD78987.1| DNA-directed RNA polymerase II subunit RPB3 [Salpingoeca sp. ATCC
50818]
Length = 271
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 159/294 (54%), Gaps = 40/294 (13%)
Query: 4 ASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
AS+ R P+V+I L D K +L + D ++AN+ RR MIAEVPT+AID V IE+N++VL+
Sbjct: 2 ASFNRDPQVRIMSLTDSEIKLQLSNADTALANSFRRSMIAEVPTLAIDDVHIEINTTVLH 61
Query: 64 DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
DEFIAHRLGLIPLTSERA + RDC D C C V+ L C ++VT++
Sbjct: 62 DEFIAHRLGLIPLTSERAAHFNYMRDCTC---DAGCPNCVVKLELHVACRDAHQMEVTTE 118
Query: 124 DLYSS----DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
L S+ D SVVPV D + Q I+I K+R+GQEL+L ARKG+GK+HAK
Sbjct: 119 HLRSTLDGPDTSVVPV-ATAAERRDQSIQGNHIVICKIRQGQELKLTCYARKGVGKEHAK 177
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
W P A V + Y+P ++ + E + W S +++ D D
Sbjct: 178 WIPTAAVAYEYDP-----DNALRHTFYEHPEMWPRSEYSQLTDDD--------------- 217
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
K EA P D+F TVESTGA+ ++ +A+E L KL
Sbjct: 218 -------KHEADYDPD-----GTADTFYMTVESTGAMPPEKICQSALESLFTKL 259
>gi|307202125|gb|EFN81625.1| DNA-directed RNA polymerase II subunit RPB3 [Harpegnathos saltator]
Length = 276
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 168/297 (56%), Gaps = 44/297 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L ++ KF++ T+ S+AN++RRV IAE PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEYTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHR+G+IPL S+ + ++++RDC D C CSVEF L KC DQT VT+ D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMDF---CPECSVEFTLDVKCTEDQTRHVTTAD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
SSD V+PV D + Y TD+ I+IVKLR+GQEL+LRA A+KG GK+HAKW
Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDE---ILIVKLRKGQELKLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V+F Y+P ++ M + W +S +++
Sbjct: 177 NPTAGVSFEYDP-----DNSMRHTLFPKPDEWPKSEYSEL-------------------- 211
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ + P E AK + + F VES+GA+K +V+ I LK KL ++
Sbjct: 212 ------EEDQYEAPFNWE--AKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQ 260
>gi|68478788|ref|XP_716556.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|68478891|ref|XP_716500.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438170|gb|EAK97505.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438227|gb|EAK97561.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|238881321|gb|EEQ44959.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida albicans
WO-1]
Length = 318
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 167/300 (55%), Gaps = 37/300 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V IRE + D+ F L++ D ++AN++RR +IAEVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE ++ +SRDC D C CSV L A C ++ T++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLIANCATESTMNVYASDLQKMS 125
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
H+ + DP D Q RG +I KLR+ QEL L IA+KGI K+HAKWSP A + F
Sbjct: 126 HNGSKLG--DPVIRDP--QARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFE 181
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P W + T + Y VDAEA + E
Sbjct: 182 YDP-------------------WNKLKHTDYW---------YEVDAEAEWPKSKNCDWEE 213
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA--VRLSEDTVEADD 307
A + AK ++ F VE+ G + +++++ +IE L+ KL A + L+++ VE ++
Sbjct: 214 APDPEAPFDYKAKPSTYYFDVETVGNLPPNEVIIKSIETLQTKLAAISIELNKEDVEVNE 273
>gi|408391899|gb|EKJ71265.1| hypothetical protein FPSE_08504 [Fusarium pseudograminearum CS3096]
Length = 340
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 161/300 (53%), Gaps = 43/300 (14%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG Q P+VKI + FEL T+ S ANA+RRV+ AEVPTIAIDLVEIE NSS
Sbjct: 11 MDGEPEQ--PQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSS 68
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL DEFIAHRLGLIPL S+ + +SRDCD + CE CSV L AKC SD+ + V
Sbjct: 69 VLADEFIAHRLGLIPLDSKGVAELNYSRDCDC---EQYCEQCSVTLTLHAKCTSDEIMKV 125
Query: 121 TSKDLY---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
++DL +SV +DP GY G +I KLR+ QEL++ IA+KGI K+H
Sbjct: 126 YARDLVVDGRHGNSVGSPMIMDPEGY-------GCLIAKLRKHQELKISCIAKKGIAKEH 178
Query: 178 AKWSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
AKW P + V F Y+P +N D + W +S + D P G E
Sbjct: 179 AKWMPTSAVGFEYDPHNKLNHIDWWFENDTDPAVEWPKSKYAQWEDA-PQEG-------E 230
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ YD A + F F VES+G+++ Q+V I VL+QK+ +
Sbjct: 231 PFDYD-------------------AVPNRFYFEVESSGSMEPDQIVREGIRVLQQKIGGL 271
>gi|46109130|ref|XP_381623.1| hypothetical protein FG01447.1 [Gibberella zeae PH-1]
Length = 337
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 161/300 (53%), Gaps = 43/300 (14%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG Q P+VKI + FEL T+ S ANA+RRV+ AEVPTIAIDLVEIE NSS
Sbjct: 8 MDGEPEQ--PQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSS 65
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL DEFIAHRLGLIPL S+ + +SRDCD + CE CSV L AKC SD+ + V
Sbjct: 66 VLADEFIAHRLGLIPLDSKGVAELNYSRDCDC---EQYCEQCSVTLTLHAKCTSDEIMKV 122
Query: 121 TSKDLY---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
++DL +SV +DP GY G +I KLR+ QEL++ IA+KGI K+H
Sbjct: 123 YARDLVVDGRHGNSVGSPMIMDPEGY-------GCLIAKLRKHQELKISCIAKKGIAKEH 175
Query: 178 AKWSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
AKW P + V F Y+P +N D + W +S + D P G E
Sbjct: 176 AKWMPTSAVGFEYDPHNKLNHIDWWFENDTDPAVEWPKSKYAQWEDA-PQEG-------E 227
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ YD A + F F VES+G+++ Q+V I VL+QK+ +
Sbjct: 228 PFDYD-------------------AVPNRFYFEVESSGSMEPDQIVREGIRVLQQKIGGL 268
>gi|384498629|gb|EIE89120.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Rhizopus delemar RA 99-880]
Length = 201
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 127/191 (66%), Gaps = 12/191 (6%)
Query: 3 GASYQ-RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
G SY P + IREL D F L DTD S+ANALRRVMIAEVPT+AID+VEIE N++V
Sbjct: 4 GTSYGLSGPSITIRELTKDRINFILSDTDLSVANALRRVMIAEVPTVAIDMVEIETNTTV 63
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
L DEFIAHRLG++P+ S +R++RDC C CSVE L KC D+T DVT
Sbjct: 64 LADEFIAHRLGMVPIDSREVEKLRYTRDCTC---SQYCSECSVELTLHVKCTDDRTKDVT 120
Query: 122 SKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
++DL S++ S PV D D G+++VKLR+G EL+L+ IA+KG+ K+HAKWS
Sbjct: 121 TRDLMSTNPSFTPV------LQDKDDS--GVLLVKLRKGHELKLKCIAKKGVAKEHAKWS 172
Query: 182 PAATVTFMYEP 192
P + V F Y+P
Sbjct: 173 PVSGVAFEYDP 183
>gi|146412808|ref|XP_001482375.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 164/299 (54%), Gaps = 38/299 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V IR+ + D+ F L+D D SMAN++RR M+AEVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LG+IPL SE ++ +SRDC D C C V+ L AKC SD T+ V + DL +
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCLVKLELTAKCDSDSTMSVYATDLAKFHN 125
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
DP D QRG +I KLR+ QELRL IA+KGI K+HAKWSP A + F Y
Sbjct: 126 G---SKLGDPVVRDH--HQRGPLICKLRKHQELRLTCIAKKGIAKEHAKWSPCAAIGFEY 180
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
+P W + T + Y +DA+ + EA
Sbjct: 181 DP-------------------WNKLKHTDYW---------YEIDADKEWPKSANCEWEEA 212
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD--AVRLSEDTVEADD 307
+ AK +F VE+ G + +++VL IE L+ KL A+ L++D++EA +
Sbjct: 213 PDPDAPFDYTAKPSTFYMDVETVGNLPPNEVVLKGIETLQLKLAGIAMELNKDSIEASN 271
>gi|323454964|gb|EGB10833.1| hypothetical protein AURANDRAFT_22116 [Aureococcus anophagefferens]
Length = 324
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 180/314 (57%), Gaps = 22/314 (7%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
+ R P+V +R+L+++ FE+RDTD S AN+LRRVM+ EV ++AIDLV E N+SV+
Sbjct: 7 ASGRSRVPQVSVRDLEENTMCFEVRDTDCSTANSLRRVMVGEVVSMAIDLVTFEENTSVV 66
Query: 63 NDEFIAHRLGLIPLTSERAMSMRF--SRDCDACDGDGQCEFCS------VEFHLRAK--- 111
NDE IAHRLGL+P+ ++R + RF +RDCD D C+FC+ V F RAK
Sbjct: 67 NDEIIAHRLGLVPI-NDRDIRRRFRHTRDCDC---DSHCDFCAATLKLHVSFDDRAKDLP 122
Query: 112 -CHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIAR 170
+ L VT+ DL S D V PV FV +ST Q+ GI +VKL +GQEL+L IA+
Sbjct: 123 EHEKNNPLTVTTLDLVSDDPDVAPVHFVS-KREESTSQETGIALVKLAKGQELKLTCIAK 181
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI--DPNTG 228
G GK+HAKW P + F PE+ ++ + L+ + + ++ P V D +
Sbjct: 182 LGCGKEHAKWIPVSKCVFRPVPEVTWDDAAVAELAPTLRDAIIQVCPAGVLGYADDRDRS 241
Query: 229 QVYVVDAEAYT-YDDEVIKKAEAMGKPGLVEIYAKEDS--FIFTVESTGAIKASQLVLNA 285
++ V D A + D++ + + G ++A+ + FIF VES G+I +VL
Sbjct: 242 KIEVKDEAAILDFADDIHALTKTLNPTGKSMLFARPSTTNFIFDVESLGSIPVDDVVLCG 301
Query: 286 IEVLKQKLDAVRLS 299
I LK+KL ++L+
Sbjct: 302 INELKRKLTNLQLA 315
>gi|149032425|gb|EDL87316.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_a
[Rattus norvegicus]
Length = 241
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/193 (53%), Positives = 135/193 (69%), Gaps = 11/193 (5%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPE 193
+P A V F Y+P+
Sbjct: 177 NPTAGVAFEYDPD 189
>gi|367055384|ref|XP_003658070.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
gi|347005336|gb|AEO71734.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
Length = 337
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 162/288 (56%), Gaps = 36/288 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P VKI + K+EL + D + AN+LRRVM+AE+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 15 PMVKISQADSVRVKYELSNVDLAFANSLRRVMLAEIPTIAIDLVEIEENSSVLADEFIAH 74
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE M SR+CD DG+CE CSV L AKC ++ + V ++DL +
Sbjct: 75 RLGLIPLNSEGVKDMLTSRECDC---DGRCENCSVTLTLHAKCTGEENMHVFARDLVPTG 131
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ V P D+ + G +I+KLR GQE++L IA+KGI K+HAKW+P+A + F
Sbjct: 132 ERINQV-IGTPVLSDA--EGLGPLILKLRPGQEIKLECIAKKGIAKEHAKWAPSAAIGFE 188
Query: 190 YEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y+P ++ DL + K W S + ++ P G E + YD
Sbjct: 189 YDPHNKLHHLDLW--YEQDPKAEWPPSEYAE-WEEPPQEG-------EPFDYD------- 231
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
A + F F VES G++ +V+ I+V++QKL ++
Sbjct: 232 ------------AVPNRFYFNVESAGSLPPDAIVIEGIQVIQQKLASL 267
>gi|342882719|gb|EGU83319.1| hypothetical protein FOXB_06170 [Fusarium oxysporum Fo5176]
Length = 340
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 162/300 (54%), Gaps = 43/300 (14%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG Q P+VKI + FEL T+ + ANA+RR++ AEVPTIAIDLVEIE NSS
Sbjct: 11 MDGEPEQ--PQVKISAADHTHVDFELSKTNLAFANAVRRIIQAEVPTIAIDLVEIETNSS 68
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL DEFIAHRLGLIPL S+ + +SRDCD + CE CSV L AKC SD+ + V
Sbjct: 69 VLADEFIAHRLGLIPLDSKGVDELNYSRDCDC---EQYCEQCSVTLTLHAKCTSDEIMKV 125
Query: 121 TSKDLYSSDHSVVPVD---FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
++DL + V DP GY G +I KLR+GQEL++ IA+KGI K+H
Sbjct: 126 YARDLVVDGRHMNGVGSPVITDPEGY-------GCLIAKLRKGQELKISCIAKKGIAKEH 178
Query: 178 AKWSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
AKW P + V F Y+P ++ D + W +S + ++ P G E
Sbjct: 179 AKWMPTSAVGFEYDPHNKLHHIDWWFENDTDPAVEWPKSKYAE-WEEPPQEG-------E 230
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ YD A + F F VE++G+++ Q+V N I VL+QK+ +
Sbjct: 231 PFDYD-------------------AVPNRFYFEVETSGSMEPDQIVQNGIRVLQQKIGGL 271
>gi|427778021|gb|JAA54462.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 324
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 166/338 (49%), Gaps = 85/338 (25%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DTD S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQ-------------------------- 98
FIAHRLGLIPLTS+ + M++SRDC D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADXXXXIDWVQLEANSTVLHDEFIAHRLGLIP 122
Query: 99 ---------------------CEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF 137
C CSVEF L KC +QT VT+ DL SSD VVPV
Sbjct: 123 LTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVKCLDEQTRHVTTADLKSSDPRVVPVTS 182
Query: 138 VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
+ + I+IVKLR+GQE++ RA A+KG GK+HAKW+P V F Y+P
Sbjct: 183 RHKDDTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTCGVAFEYDP----- 237
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE--AMGKPG 255
++ + + W +S YT DE +AE + GKP
Sbjct: 238 DNAFRHTTYPRPEEWPKSE---------------------YTELDEDHAEAEFQSEGKP- 275
Query: 256 LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ F + VES+GA+K +VL+ + VLK+KL
Sbjct: 276 --------NKFYYNVESSGALKPENIVLSGLSVLKKKL 305
>gi|241954894|ref|XP_002420168.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223643509|emb|CAX42390.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 313
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 166/300 (55%), Gaps = 37/300 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V IRE + D+ F L++ D ++AN++RR +IAEVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE ++ +SRDC D C CSV L A C ++ T++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLVANCATESTMNVYASDLQKMS 125
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
H+ + DP D Q RG +I KLR+ QEL L IA+KGI K+HAKWSP A + F
Sbjct: 126 HNGSKLG--DPVIRDP--QARGPLICKLRKHQELSLTCIAKKGIAKEHAKWSPTAAIGFE 181
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P W + T + Y VDAEA + E
Sbjct: 182 YDP-------------------WNKLKHTDYW---------YEVDAEAEWPKSKNCDWEE 213
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA--VRLSEDTVEADD 307
A + AK + F VE+ G + +++V+ +IE L+ KL A + L+++ VE ++
Sbjct: 214 APDPEAPFDYKAKPSIYYFDVETVGNLPPNEVVIKSIETLQTKLAAISIELNKEDVEVNE 273
>gi|302908578|ref|XP_003049900.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730836|gb|EEU44187.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 335
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 164/300 (54%), Gaps = 43/300 (14%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG Q P+VKI + FEL T+ + ANALRRV+ AEVPTIAIDLVEIE+NSS
Sbjct: 8 MDGEPEQ--PQVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSS 65
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL DEFIAHRLGLIPL S+ + SRDCD + CE CSV +L AKC SD+ + V
Sbjct: 66 VLADEFIAHRLGLIPLDSKGVGELNNSRDCDC---EQYCEQCSVTLNLHAKCTSDEIMKV 122
Query: 121 TSKDLYSSD---HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
++DL +SV DP GY G +I KLR+ QEL++ IA+KGI K+H
Sbjct: 123 YARDLVVDGRHANSVGSPVITDPEGY-------GCLIAKLRKDQELKITCIAKKGIAKEH 175
Query: 178 AKWSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
AKW P + V F Y+P ++ D+ + + W +S + D P G E
Sbjct: 176 AKWMPTSAVGFEYDPHNKLHHLDMWFENDTDPEVEWPKSKYAQWED-PPQEG-------E 227
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ YD A + F F VE++G+++ Q+V + I VL+QK+ +
Sbjct: 228 PFDYD-------------------AVPNRFYFEVETSGSMEPDQIVQSGIRVLQQKIGGL 268
>gi|145528814|ref|XP_001450201.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417801|emb|CAK82804.1| unnamed protein product [Paramecium tetraurelia]
Length = 308
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 180/304 (59%), Gaps = 17/304 (5%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I EL D+ KF + D S+ANA+RRVMIAEVP +AI V+I N+S L+DEF+A R
Sbjct: 13 RIEILELSDEKCKFSF-EGDLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL----- 125
LGLIPL S A S + + DA D Q V F LR K +D L++TS+ L
Sbjct: 72 LGLIPLVSYAADSKMYDWEADADSIDDQK--TKVVFTLRQKNLNDAPLEITSQHLEPEFG 129
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
+ ++ PV P ++ GI I +L + Q + +R A KG GK HAKW+P
Sbjct: 130 QVGEMAIRPVRMFSPIN----GKEVGIPITRLGKNQSVHVRCHALKGFGKMHAKWTPINI 185
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDDEV 244
TF +E E++ + +SLSL EKQS +S P VF +D N Q +V+A E + +E
Sbjct: 186 ATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMDAN--QDLIVNAIEKCVFCEEC 243
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
I+ AE+M KP L+++ K++ +IFTVES G +KA+ +V A+ VL++K+D + S+D
Sbjct: 244 IRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVDEI--SQDLSF 301
Query: 305 ADDQ 308
A Q
Sbjct: 302 AQQQ 305
>gi|340719719|ref|XP_003398295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
terrestris]
Length = 273
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 166/290 (57%), Gaps = 44/290 (15%)
Query: 13 KIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
K +L ++ KF++ DT+ S+AN++RRV IAE PT+AID V++E NS+VL+DEF+AHR+G
Sbjct: 7 KNNDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIG 66
Query: 73 LIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
+IPL S+ + ++++RDC D C CSVEF L KC DQT VT+ D SSD
Sbjct: 67 MIPLISDDVVDRIQYTRDCQCMDF---CPECSVEFTLDVKCTEDQTRHVTTADFKSSDPR 123
Query: 132 VVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
V+PV D + Y TD+ I+IVKLR+GQEL+LRA A+KG GK+HAKW+P A V+
Sbjct: 124 VLPVTSRHREDDASEYGETDE---ILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVS 180
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
F Y+P ++ M + W +S +++ +
Sbjct: 181 FEYDP-----DNSMRHTLFPKPDEWPKSEYSEL--------------------------E 209
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ P E AK + + F VES+GA+K +V+ I LK KL ++
Sbjct: 210 EDQYEAPFNWE--AKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQ 257
>gi|320166369|gb|EFW43268.1| polymerase II polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 270
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 162/284 (57%), Gaps = 44/284 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+I EL D +F L T+ S+AN+LRRV IAEVPT+AIDLV+ + NSSVL+DEF+AH
Sbjct: 7 PVVQILELTPDNVRFVLSKTELSVANSLRRVCIAEVPTMAIDLVQFDENSSVLHDEFVAH 66
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+PL SE A + +CD DG C C+V L A + V ++DL SSD
Sbjct: 67 RLGLLPLASETAGEFDYLAECDC---DGGCNRCTVSLTLEA----EGPCSVVARDLRSSD 119
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
SVVP+ D +G +Q +++VKL GQ ++L AIA+KGIGK+HAKW+P V+
Sbjct: 120 ESVVPISQRDASG----SEQHDVVLVKLGAGQRIKLTAIAKKGIGKEHAKWNPTCGVSME 175
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P ++ + + + Q+W +S +++ GQ E
Sbjct: 176 YDP-----DNKLRHTTYYDPQNWPQSHLSEL-----PAGQ------------------CE 207
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A +I AK D F VE++G I + +VLNAI VLKQKL
Sbjct: 208 AP-----FDINAKADKFWLNVEASGVIPPADIVLNAISVLKQKL 246
>gi|2829844|sp|P97760.1|RPB3_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|1850789|dbj|BAA12205.1| the third largest RNA polymerase II subunit [Mus musculus]
Length = 275
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 165/293 (56%), Gaps = 44/293 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA +K GK+HAKW
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYVKKRSGKEHAKW 176
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P+ + + K + E
Sbjct: 177 NPTAGVAFEYDPDNGLRHTVYPKPEEGPKSEYSELD------------------------ 212
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ + L+A+ LK+KL
Sbjct: 213 EDESQAPYDPNGKP---------ERFYYNVESCGSLRPETIGLSALSGLKKKL 256
>gi|390367669|ref|XP_003731306.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Strongylocentrotus purpuratus]
Length = 262
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 115/264 (43%), Positives = 153/264 (57%), Gaps = 38/264 (14%)
Query: 31 ASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRD 89
S+AN++RR ++AEVPTIAID VEI+ NSSVL+DEFI+HR+GLIPLTS+ + + F+RD
Sbjct: 15 TSVANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRD 74
Query: 90 CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQ 149
C C + C CSVE L KC DQT VTS+DL SS+ VVPV + D +
Sbjct: 75 C-GC--EEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQESSDYGEVD 131
Query: 150 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEK 209
I+IVKLR+GQELRLRA A+KG GKDHAKW P A + F Y+P +++M +
Sbjct: 132 -DILIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAAIAFEYDP-----DNIMRHTVYPKP 185
Query: 210 QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFT 269
+ W +S T+V D +T Q G + A + F F
Sbjct: 186 EEWPKSEFTEV---DEDTAQ-------------------------GKFDGDAVPNKFFFN 217
Query: 270 VESTGAIKASQLVLNAIEVLKQKL 293
VES GA+ +V + + VLK+KL
Sbjct: 218 VESIGALTPENIVFSGLSVLKKKL 241
>gi|389741508|gb|EIM82696.1| insert subdomain of RNA polymerase alpha subunit [Stereum hirsutum
FP-91666 SS1]
Length = 411
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 159/304 (52%), Gaps = 57/304 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IR LK D F L + + + AN+LRRVM+A++PTIAID+VEIE N++VL DEFIAH
Sbjct: 9 PTVRIRTLKRDRVNFVLENAELAFANSLRRVMMADLPTIAIDMVEIETNTTVLPDEFIAH 68
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG+IPL S +MR++RDC C CSV+ HL CH ++T+D+TS L
Sbjct: 69 RLGMIPLVSANCDEAMRYNRDCTCAT---NCSACSVKLHLNVACHDNRTMDITSNHL--- 122
Query: 129 DHSVVPVDFVD-------------------PAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
VVP D+ D P G + + Q ++I K+R+GQEL++R IA
Sbjct: 123 --DVVPHDYTDYAADEQQEEFHKRIDTFGHPVGKNDPNVQP-VLICKIRKGQELKVRCIA 179
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
+KGI K+HAKWSP + V+F Y+P L W E + + N +
Sbjct: 180 KKGIAKEHAKWSPCSAVSFEYDPHN----------KLRHTSYWFEGDARSEWPLSENAKE 229
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
E DDE + AK + F F VE+ G++ ++V+ + L
Sbjct: 230 ------EEPPRDDEPF------------DYNAKPNKFYFEVETDGSLGPQEVVMKGLGEL 271
Query: 290 KQKL 293
+ KL
Sbjct: 272 QTKL 275
>gi|116205067|ref|XP_001228344.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
gi|88176545|gb|EAQ84013.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
Length = 338
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 116/286 (40%), Positives = 157/286 (54%), Gaps = 38/286 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P VKI + KFEL + D + AN+LRRVM+ E+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL ++ + F+RDCD DG CE CSV L AKC D+ + V ++DL +
Sbjct: 76 RLGLIPLNADGVEGLLFARDCDC---DGCCEHCSVRLTLHAKCTGDENMHVFARDLVPTG 132
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ V P DS + G +I+KLR GQE++L IA+KGI K+HAKW+P+A + F
Sbjct: 133 ERINQV-LGTPVVSDS--EGLGALILKLRPGQEIKLECIAKKGIAKEHAKWAPSAAIGFE 189
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTK--VFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y+P + L + E + E P++ ++ P G E + YD
Sbjct: 190 YDP----HNKLRHTDFWYETDAKTEWPPSEYAAWEEPPQEG-------EPFDYD------ 232
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A + F F VES G + +V I+V++QKL
Sbjct: 233 -------------AVPNRFYFNVESAGNLPPDTIVSEGIKVIQQKL 265
>gi|390368205|ref|XP_781436.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1, partial [Strongylocentrotus purpuratus]
Length = 388
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 152/262 (58%), Gaps = 38/262 (14%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCD 91
+AN++RR ++AEVPTIAID VEI+ NSSVL+DEFI+HR+GLIPLTS+ + + F+RDC
Sbjct: 143 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDC- 201
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
C + C CSVE L KC DQT VTS+DL SS+ VVPV + D +
Sbjct: 202 GC--EEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQESSDYGEVD-D 258
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I+IVKLR+GQELRLRA A+KG GKDHAKW P A + F Y+P +++M + +
Sbjct: 259 ILIVKLRKGQELRLRAYAKKGFGKDHAKWVPTAAIAFEYDP-----DNIMRHTVYPKPEE 313
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
W +S T+V D +T Q G + A + F F VE
Sbjct: 314 WPKSEFTEV---DEDTAQ-------------------------GKFDGDAVPNKFFFNVE 345
Query: 272 STGAIKASQLVLNAIEVLKQKL 293
S GA+ +V + + VLK+KL
Sbjct: 346 SIGALTPENIVFSGLSVLKKKL 367
>gi|358397037|gb|EHK46412.1| hypothetical protein TRIATDRAFT_153717, partial [Trichoderma
atroviride IMI 206040]
Length = 377
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/300 (39%), Positives = 161/300 (53%), Gaps = 43/300 (14%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG Q P+VKI FEL T+ ANALRR++ AEVPTIAIDLVEIEVNSS
Sbjct: 11 MDGEPEQ--PQVKISAADSTRVDFELSRTNLPFANALRRIIQAEVPTIAIDLVEIEVNSS 68
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL DEFIAHRLGLIPL S+ + +SRDCD + CE CSV L AKC SD+ + V
Sbjct: 69 VLADEFIAHRLGLIPLDSKGVNELNYSRDCDC---EQYCEHCSVSLTLHAKCTSDEIMKV 125
Query: 121 TSKDLYSSDH---SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
++DL SV DP G G +I KLR+GQEL++ IA+KGI K+H
Sbjct: 126 YARDLVVDGRHAGSVGNAVITDPEGL-------GCLIAKLRKGQELKITCIAKKGIAKEH 178
Query: 178 AKWSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
AKW P + V F Y+P ++ D+ + + ++ W +S + + + + E
Sbjct: 179 AKWMPTSAVGFEYDPHNKLHHLDMWFENNTDPEKEWPKSKYAQW--------EEPLQEGE 230
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
++YD A + F F VE++G ++ ++ I VL+QK+ +
Sbjct: 231 PFSYD-------------------AVPNRFYFEVEASGTMEPDLIIQGGIRVLQQKIGGL 271
>gi|242214615|ref|XP_002473129.1| predicted protein [Postia placenta Mad-698-R]
gi|220727790|gb|EED81699.1| predicted protein [Postia placenta Mad-698-R]
Length = 265
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 159/287 (55%), Gaps = 36/287 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IREL+ D+ F + + D ++AN+LRRVM+A++PT+AID+VEIE N++VL DEFIAH
Sbjct: 4 PIVRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAH 63
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG+IPL S MR++RDC C+FC+VE L CH +DVTS L S
Sbjct: 64 RLGMIPLVSSNCDEGMRYTRDCTCL---SWCQFCAVELTLHVACHDGVAMDVTSMHLDVS 120
Query: 129 DH-SVVPVDFVDPAG-YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
D + P +F P G +D + ++I K+R+GQELRLR IA+KG+ K+HAKWSP + V
Sbjct: 121 DELAKRPENFGHPVGKFDPS--VSPVLIAKIRKGQELRLRCIAKKGVAKEHAKWSPCSAV 178
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
F Y+P L W ES D +A E K
Sbjct: 179 AFEYDPHN----------KLRHTSYWFES------------------DEKAEWPLSENAK 210
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ EA + A+ + F VE+ G++ ++V+ ++ L+ KL
Sbjct: 211 EEEAPRDDQPFDYNARPNRFYMDVETDGSLGPQEVVMKGLQELQTKL 257
>gi|67970900|dbj|BAE01792.1| unnamed protein product [Macaca fascicularis]
Length = 251
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/193 (52%), Positives = 132/193 (68%), Gaps = 11/193 (5%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L + V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAKW
Sbjct: 120 LIPNSPRVIPVTSRNRDNDPNDY---VEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 176
Query: 181 SPAATVTFMYEPE 193
+P A V F Y+P+
Sbjct: 177 NPTAGVAFEYDPD 189
>gi|74202237|dbj|BAE23500.1| unnamed protein product [Mus musculus]
Length = 332
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/194 (53%), Positives = 133/194 (68%), Gaps = 11/194 (5%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+D
Sbjct: 2 PYANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHD 61
Query: 65 EFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
EFIAHRLGLIPLTS+ + +++SRDC C + C CSVEF L +C+ DQT VTS+
Sbjct: 62 EFIAHRLGLIPLTSDDIVDKLQYSRDC-TC--EEFCPECSVEFTLDVRCNEDQTRHVTSR 118
Query: 124 DLYSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
DL S+ V+PV DP Y D I+IVKLR+GQELRLRA A+KG GK+HAK
Sbjct: 119 DLISNSPRVIPVTSRNRDNDPNDYVEQDD---ILIVKLRKGQELRLRAYAKKGFGKEHAK 175
Query: 180 WSPAATVTFMYEPE 193
W+P A V Y+P+
Sbjct: 176 WNPTAXVALEYDPD 189
>gi|358341556|dbj|GAA27309.2| DNA-directed RNA polymerase II subunit RPB3 [Clonorchis sinensis]
Length = 266
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 162/291 (55%), Gaps = 42/291 (14%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V + ++ KF + +TD S+ANA+RRV IAEVPT+AID V+IE N+++LNDE
Sbjct: 3 YANQPIVTLTSYNNENCKFIIEETDLSVANAIRRVCIAEVPTLAIDWVQIEENNTMLNDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIA R+GLIPLTS+ + M + R+C + CE CSVE L C +D VT D
Sbjct: 63 FIAQRVGLIPLTSDSVVDKMAYFRECPCREF---CEQCSVELTLDVCCTTDAPRHVTGAD 119
Query: 125 LYSSDHSVVPVDFVDP--AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
L SS+ V PV DP A Y Q I+IVK+R+GQ L+LRAIA+KG GK+HAKW+P
Sbjct: 120 LLSSNRDVQPVPSRDPDDAAYVG---QESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNP 176
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A V F Y+P ++ + L++ + W P + P +D
Sbjct: 177 TAGVGFEYDP-----DNALRHTFLQKPEEW----PRSEYSTLP---------------ED 212
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
E + GKP + F F VES G+++ +V + ++VLK+KL
Sbjct: 213 EHQAPYDPHGKP---------NRFFFNVESCGSLQPKNIVFSGLDVLKKKL 254
>gi|440635232|gb|ELR05151.1| DNA-directed RNA polymerase II subunit C [Geomyces destructans
20631-21]
Length = 342
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 159/291 (54%), Gaps = 42/291 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKI + + FEL + D S AN+LRRV++AEVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 14 PQVKISDADNLRVDFELSNVDLSFANSLRRVILAEVPTMAIDLVEVEANTSVLADEFLAH 73
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL---- 125
RLGLIPL S+ A + +SRDC+ + CE CSV L AKC SD+ + V ++DL
Sbjct: 74 RLGLIPLNSKNAADVNYSRDCEC---EQYCEQCSVTLFLNAKCDSDEIMKVYARDLVVDS 130
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
++ V F D G G +I KLR+GQEL+++ IA+KGI K+HAKW+P A
Sbjct: 131 LKANAWVGNPIFTDEGG-------NGPVICKLRKGQELKMKCIAKKGIAKEHAKWAPTAA 183
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
V F Y+P L W E P K + P + Y +E
Sbjct: 184 VGFEYDPHNK----------LRHMDLWFEEDPAKEW---PKS---------KYADWEEPA 221
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
++ E + A SF F +ES G ++ +V I+VL+QKL +
Sbjct: 222 QEGEPF------DYDAVPGSFYFELESAGNLEPDAVVQEGIKVLQQKLATI 266
>gi|156055988|ref|XP_001593918.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980]
gi|154703130|gb|EDO02869.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 335
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 167/303 (55%), Gaps = 44/303 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKI E + FEL + D S AN+LRR +++EVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY--- 126
RLGLIPL S+ + ++RDCD CDG+ CE CSV L A+C D+ + V ++DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCD-CDGN--CELCSVTLTLHARCTGDEIMKVYARDLVVDP 131
Query: 127 -SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
++ V DP G G +I KLR+GQELR++ IA KGI K+HAKW+P A
Sbjct: 132 QRANKWVGNPVITDPDGL-------GPVIAKLRKGQELRMKCIALKGIAKEHAKWAPTAA 184
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
V F Y+P + ++ + L W E K + P + Y D
Sbjct: 185 VGFEYDP-----HNKLKHIDL-----WYEHDAAKEW---PKS-----------KYAD--W 218
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEA 305
++ G P + A ++F F VES G ++ ++ I+V++QKL AV +D E
Sbjct: 219 EEPPQEGAP--FDYDAVPNNFYFEVESIGNLEPDAIIQQGIKVMQQKLAAVL--QDLTEG 274
Query: 306 DDQ 308
D Q
Sbjct: 275 DGQ 277
>gi|449268851|gb|EMC79688.1| DNA-directed RNA polymerase II subunit RPB3, partial [Columba
livia]
Length = 248
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 161/266 (60%), Gaps = 44/266 (16%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCD 91
+AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + M++SRDC
Sbjct: 3 VANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDC- 61
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF----VDPAGYDSTD 147
C D C CSVEF L +C+ DQT VTS+DL S++ V+PV DP Y
Sbjct: 62 TC--DEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDY---V 116
Query: 148 QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLE 207
+Q I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+P ++ +
Sbjct: 117 EQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDP-----DNALRHTVYP 171
Query: 208 EKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFI 267
+ + W +S +++ + DA+A YD GKP + F
Sbjct: 172 KPEEWPKSEYSEIDE----------EDAQA-PYD--------PNGKP---------ERFY 203
Query: 268 FTVESTGAIKASQLVLNAIEVLKQKL 293
+ VES G+++ +VL+A+ LK+KL
Sbjct: 204 YNVESCGSLRPETIVLSALSGLKKKL 229
>gi|430812471|emb|CCJ30120.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 289
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 157/288 (54%), Gaps = 45/288 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V IR ++ + F L + D + AN+LRRV++AEVPT+AIDLVEIE+N+SVL DEFI H
Sbjct: 7 PQVTIRNIEKNSIDFVLSNVDLAFANSLRRVILAEVPTVAIDLVEIEINTSVLADEFITH 66
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG+IPL S + ++RDCD D C CSV+ L AKC SD T+DV SKDL
Sbjct: 67 RLGMIPLDSANVDDKLVYTRDCDC---DQYCTKCSVQLTLYAKCTSDGTMDVYSKDLIVE 123
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+S +DP G +GI+I KLR+ QELRL+ IA+KGI K+HAKWSP + + F
Sbjct: 124 HNST-----IDPDG-------KGILICKLRKAQELRLKCIAKKGIAKEHAKWSPVSAIAF 171
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y+P N+ L W E S + N+ EA+ Y E K
Sbjct: 172 EYDP---WNK-------LHHTDYWFEESSDAEWPKSKNSDWEEAPRDEAFDYTAEPSK-- 219
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
F F +E+ G++ ++++ I+ L+ KL +
Sbjct: 220 -----------------FYFCIETVGSLTPNEVISQGIKYLQVKLATI 250
>gi|344232873|gb|EGV64746.1| insert subdomain of RNA polymerase alpha subunit [Candida tenuis
ATCC 10573]
Length = 305
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 172/314 (54%), Gaps = 41/314 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P + IR + D+ F L++ D ++AN++RR M+AEVPT+AIDLVEI+VN+SVL DEFIAH
Sbjct: 11 PAITIRSSERDHVNFVLKNVDLAVANSVRRTMMAEVPTLAIDLVEIDVNTSVLADEFIAH 70
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S+ + +SRDC D C CSV+ L AKC +D T+++ + DL
Sbjct: 71 RLGLIPLVSDSIDELSYSRDCTC---DQYCNKCSVKLELAAKCDTDSTMNIYASDLAKFQ 127
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ DP D+ Q +G +I KLR+ QELR+ IA+KGI K+HAKWSP + V F
Sbjct: 128 NGST---LGDPVIRDA--QGKGSLICKLRKHQELRITCIAKKGIAKEHAKWSPCSAVGFE 182
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA-YTYDDEVIKKA 248
Y+P L+ W E S + N D EA + Y+
Sbjct: 183 YDPWNK----------LKHTDYWYEESVEDEWPKSENCEWEEAPDPEAPFDYN------- 225
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD--AVRLSEDTVEAD 306
A+ ++F +E+ G++ + + + ++E L+ KL +V L++DTVE+
Sbjct: 226 ------------ARANNFYVDIETIGSLSPNDVFVKSLETLQLKLAGISVELNKDTVESS 273
Query: 307 D-QFGELGAHMRGG 319
+ + G L + R G
Sbjct: 274 NAESGGLTTYGRNG 287
>gi|326927174|ref|XP_003209769.1| PREDICTED: ubiquinone biosynthesis protein COQ9, mitochondrial-like
[Meleagris gallopavo]
Length = 549
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 159/265 (60%), Gaps = 44/265 (16%)
Query: 34 ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDA 92
AN++RRV IAEVP IAID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + M++SRDC
Sbjct: 305 ANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDC-T 363
Query: 93 CDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF----VDPAGYDSTDQ 148
CD C CSVEF L +C+ DQT VTS+DL S++ V+PV DP Y D
Sbjct: 364 CDEF--CPECSVEFTLDVRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDYVEQDD 421
Query: 149 QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEE 208
I+IVKLR+GQEL+LRA A+KG GK+HAKW+P A V F Y+P ++ + +
Sbjct: 422 ---ILIVKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVAFEYDP-----DNALRHTVYPK 473
Query: 209 KQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIF 268
+ W +S +++ + DA+A YD GKP + F +
Sbjct: 474 PEEWPKSEYSEIDE----------EDAQA-PYDPN--------GKP---------ERFYY 505
Query: 269 TVESTGAIKASQLVLNAIEVLKQKL 293
VES G+++ +VL+A+ LK+KL
Sbjct: 506 NVESCGSLRPETIVLSALSGLKKKL 530
>gi|380478665|emb|CCF43467.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 339
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 159/288 (55%), Gaps = 42/288 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P +KI + + F+L + D S AN+LRRV+ AEVP IAIDLVEIE N+SVL DEFIAH
Sbjct: 15 PSIKISGADNIHVNFDLSNCDLSFANSLRRVIQAEVPVIAIDLVEIEANTSVLADEFIAH 74
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL---- 125
RLGLIPL S+ S+ ++RDCD + C+ CSV+ L A+C SD+T+ V + DL
Sbjct: 75 RLGLIPLQSKDVNSLLYTRDCDC---EQYCDNCSVKLTLHARCSSDETMKVYASDLIVDS 131
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
+ + +V +DP G +G +I KLR+GQEL++ IA+KGI K+HAKW P +
Sbjct: 132 FRQNGTVGNPVILDPEG-------QGSLICKLRKGQELKISCIAKKGIAKEHAKWMPTSA 184
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
V F Y+P ++ L + K W ES K+ D P G E + YD
Sbjct: 185 VGFEYDPHNKLHH-LDMWFEEDAKAEWPESKYAKMED-PPQEG-------EPFDYD---- 231
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A F F VE G+++ Q++ I++L++KL
Sbjct: 232 ---------------AVPSKFYFEVEGVGSLEPDQIIQEGIKILQEKL 264
>gi|410074507|ref|XP_003954836.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
gi|372461418|emb|CCF55701.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
Length = 312
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 162/293 (55%), Gaps = 40/293 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V +KDL +
Sbjct: 66 RLGLIPLQSTDIEQLEYSRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDL-TIV 121
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+++ + P D + G++I KLR+GQEL+L IA+KGI K+HAKW PAA + F
Sbjct: 122 SNLLGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCIAKKGISKEHAKWCPAAAIEFE 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E P K + PN+ K E
Sbjct: 180 YDP----------WNKLKHTNYWYEQDPEKEW---PNS------------------KNCE 208
Query: 250 AMGKPGLVEIY---AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
P + + AK D+F VE+ G+I Q+V+ ++ L++K+ ++ L+
Sbjct: 209 YEDPPNENDPFDYKAKADTFYMNVETVGSISVDQVVVRGVDTLQKKVASILLA 261
>gi|254573314|ref|XP_002493766.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|238033565|emb|CAY71587.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|328354411|emb|CCA40808.1| DNA-directed RNA polymerase II subunit RPB3 .5 [Komagataella
pastoris CBS 7435]
Length = 304
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 169/317 (53%), Gaps = 47/317 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PKV I +DD + L D + S+AN+LRR M+AEVPT+AIDLVEI++N+SVL DEFI+H
Sbjct: 5 PKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEFISH 64
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL SE M++SRDC D C+ CSV L A+ ++ + D+YSS
Sbjct: 65 RLGLIPLVSEDVEEMKYSRDCTCED---YCDECSVVLELSARHEGEE----GTTDVYSS- 116
Query: 130 HSVVPV------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
S++ V + +P D DQ GI++ KLR QEL +R IA+KGI K+HAKWSP
Sbjct: 117 -SLIKVSGPGNLNVGEPVRRDDYDQ--GILLCKLRNHQELNIRCIAKKGIAKEHAKWSPC 173
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
+ + F Y+P L+ W E VDA+ + D
Sbjct: 174 SAIAFEYDPHN----------KLKHTDFWFE------------------VDAKK-EWPDS 204
Query: 244 VIKKAEAMGKPGLVEIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
E KPG V Y AK + F TVE+TG++KA+Q+ I+ L++KL V +
Sbjct: 205 KYATWEEPPKPGEVFDYKAKPNRFYMTVETTGSLKANQVFSRGIKTLQEKLANVLFELEN 264
Query: 303 VEADDQFGELGAHMRGG 319
+ GA GG
Sbjct: 265 SRPANTTAYGGATAYGG 281
>gi|154310335|ref|XP_001554499.1| RNA polymerase II subunit 3 [Botryotinia fuckeliana B05.10]
gi|347828820|emb|CCD44517.1| similar to DNA-directed RNA polymerase II subunit RPB3 [Botryotinia
fuckeliana]
Length = 336
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/303 (38%), Positives = 165/303 (54%), Gaps = 44/303 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKI E + FEL + D S AN+LRR +++EVPTIAID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY--- 126
RLGLIPL S+ + ++RDCD +G CE CSV L A+C D+ + V ++DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---EGNCELCSVTLTLHARCTGDEIMKVYARDLVVDP 131
Query: 127 -SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
++ V DP G G +I KLR+GQELR++ IA KGI K+HAKW+P A
Sbjct: 132 QRANKWVGNPVITDPDGL-------GPVIAKLRKGQELRMKCIALKGIAKEHAKWAPTAA 184
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
V F Y+P + ++ + L W E K + P + Y D
Sbjct: 185 VGFEYDP-----HNKLKHIDL-----WYEHDAAKEW---PKS-----------KYAD--W 218
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEA 305
++ G P + A ++F F VES G ++ ++ I+V++QKL AV +D E
Sbjct: 219 EEPAQEGAP--FDYDAVPNNFYFEVESIGNLEPDAIIQQGIKVMQQKLAAVL--QDLTEG 274
Query: 306 DDQ 308
D Q
Sbjct: 275 DGQ 277
>gi|449018304|dbj|BAM81706.1| RNA polymerase II third large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 533
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 48/340 (14%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
+ AS QRFPK+++ L F L DTD S+ANALRR MIA VPT++IDLV I VN S
Sbjct: 20 ESASLQRFPKLRLTRLAATECDFTLSDTDISVANALRRAMIASVPTMSIDLVTIYVNDSP 79
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCD-------ACDGD----GQCEFCSVEFHLRA 110
L+DEF+AHRLGL+PL S+ A ++RDCD A G+ CE CSVE+ L
Sbjct: 80 LHDEFVAHRLGLVPLRSDTAEYFNYNRDCDCTQSRIAALSGNPMEATNCEKCSVEYILDV 139
Query: 111 KCHSD---QTLDVTSKDLYSSD---------HSVVPV-------DFVDPAGYDSTDQQRG 151
C D + ++VTS+ L +VVP+ + + D T G
Sbjct: 140 TCPPDGELEEMNVTSRHLQMDPRYFDGPAYVRAVVPIHRPDQPWELAPDSSRDRTSADAG 199
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I+I KLRRGQ L +R IA+KG G++HAKWSP A ++ +P + ++ + ++ E++
Sbjct: 200 IVICKLRRGQRLYVRCIAKKGTGREHAKWSPVAAASYRMDPSVRLDLGRINAVLSSEQKR 259
Query: 212 WVESSPTKVFDIDPN--TGQVYVVDAEAYT-----YDDEVIKKAE-AMGKPG-----LVE 258
+ ++ N TG V +V+ EAY ++ +++ + A+ + G L+
Sbjct: 260 LIVKMGGGALRVEANVVTGDVEIVEDEAYLRGRIEISNDCLRELQFALEEAGQNPFQLIT 319
Query: 259 IYAKED-----SFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ D +F FT+ESTG + +V ++ VL +K+
Sbjct: 320 LSRGSDAEGQRTFYFTLESTGVLPPEAIVQSSFRVLIEKI 359
>gi|365992198|ref|XP_003672927.1| hypothetical protein NDAI_0L02000 [Naumovozyma dairenensis CBS 421]
gi|410730081|ref|XP_003671218.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
gi|401780038|emb|CCD25975.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
Length = 311
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 161/290 (55%), Gaps = 34/290 (11%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D ++AN+ RRVMIAE+PT+AID V+IE N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSNIDLALANSFRRVMIAEIPTLAIDSVQIETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYAKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LLGRNIGHPIIQDK--ENNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E P K + PN+ Y+D
Sbjct: 180 YDP----------WNKLKHTDYWYEQDPQKEW---PNSKNC--------EYED-----PP 213
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
G+P + AK ++F VE+ G+I Q+V+ I L+QK+ ++ L+
Sbjct: 214 NEGEP--FDYKAKAETFYMNVETVGSISVDQVVVRGINTLQQKVASILLA 261
>gi|300122175|emb|CBK22749.2| unnamed protein product [Blastocystis hominis]
Length = 312
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 164/289 (56%), Gaps = 10/289 (3%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
++I EL +D KF L D S+AN LRR+MIAEVP++AI V I+ N+SVL D++IAHRL
Sbjct: 9 IEITELTEDRLKFTLSGVDTSIANGLRRIMIAEVPSVAIRTVTIKENTSVLADDYIAHRL 68
Query: 72 GLIPLTSERAMSMRFSRD-CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
GLIP+ R + S + D + SV L C D+ L+VTSK L S +
Sbjct: 69 GLIPI---RHLGDDSSTEIVDYFEVSAPGNRSSVRLELNETCTGDRPLNVTSKHLKSLNP 125
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
P A + + + GI IV L GQ L + A G+GK+HAKWSP TV+ Y
Sbjct: 126 YYAPAHATSQAEALAQNNE-GIRIVSLAPGQTLHVECEAILGVGKEHAKWSPVGTVSMKY 184
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY--DDEVIKKA 248
P +H+N DL++S E KQ V+S P KVF I+P+T +V +V+ A + D E +
Sbjct: 185 VPIVHLNRDLLDSKDFEFKQKLVDSCPRKVFSINPDTNRVTIVNESACMFCGDCEAFNTS 244
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
A +V I + + F F VE TGA+ +++ A+EVL+ KL+ ++
Sbjct: 245 YA---DKIVTISQQPNVFKFVVEGTGALPPLEILKKALEVLEMKLNRIK 290
>gi|389593679|ref|XP_003722088.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
gi|321438586|emb|CBZ12345.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
Length = 337
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 158/284 (55%), Gaps = 19/284 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+L + D+S ANALRRVM+AE+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A
Sbjct: 21 FQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKR 80
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
+ F +DC C G G C C + L+ +C +Q SK ++ D + D Y
Sbjct: 81 LNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDS----LQIDDAEVY 130
Query: 144 DSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMES 203
+ ++ GI +V L R Q L L + RK I K HAK+ P ATV Y PEI +N + ++
Sbjct: 131 PVSAEEHGIWLVTLGRSQVLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQT 190
Query: 204 LSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGK--PGLVEIYA 261
L + + WV P VF TGQV V D +A + E + + LV +
Sbjct: 191 LGKAKAREWVARCPRNVFRFVERTGQVEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQ 250
Query: 262 KEDS-----FIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
K++ F FTVESTG + Q+V +A+ V+++KL R+SE
Sbjct: 251 KKNKMGYFDFTFTVESTGVLPVLQIVYDAVAVVRKKLQ--RVSE 292
>gi|146092793|ref|XP_001466520.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|398018535|ref|XP_003862432.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
gi|134070883|emb|CAM69559.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|322500662|emb|CBZ35739.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
Length = 337
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 158/284 (55%), Gaps = 19/284 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+L + D+S ANALRRVM+AE+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A
Sbjct: 21 FQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKR 80
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
+ F +DC C G G C C + L+ +C +Q SK ++ D + D Y
Sbjct: 81 LNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDS----LQIDDAEVY 130
Query: 144 DSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMES 203
+ ++ GI +V L R Q L L + RK I K HAK+ P ATV Y PEI +N + ++
Sbjct: 131 PVSAEEHGIWLVTLGRSQVLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQT 190
Query: 204 LSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGK--PGLVEIYA 261
L + + WV P VF TGQV V D +A + E + + LV +
Sbjct: 191 LGKAKAREWVARCPRNVFRFVERTGQVEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQ 250
Query: 262 KEDS-----FIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
K++ F FTVESTG + Q+V +A+ V+++KL R+SE
Sbjct: 251 KKNKMGYFDFTFTVESTGVLPVLQIVYDAVTVVRRKLQ--RVSE 292
>gi|145231693|ref|XP_001399321.1| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus niger CBS
513.88]
gi|134056224|emb|CAK37482.1| unnamed protein product [Aspergillus niger]
gi|350634315|gb|EHA22677.1| hypothetical protein ASPNIDRAFT_52135 [Aspergillus niger ATCC 1015]
Length = 338
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 161/312 (51%), Gaps = 47/312 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L D + AN+LRRVM++E+PT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLGLIPL S+ + ++RDC+ D C CSV L A+C D + V ++DL S
Sbjct: 72 RLGLIPLISKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTGDDIMRVYARDLVVS 128
Query: 129 DHSV-----VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
PV +DP G G +I KLRRGQEL++ IA+KGI K+HAKW P
Sbjct: 129 GERANEWVGNPV-ILDPEG-------NGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPT 180
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDD 242
+ + F Y+P H N L W E P K + + N G + + YD
Sbjct: 181 SAIGFEYDP--HNN--------LRHVDYWYEEDPAKEWPVSANAGWEQPAPPDQPFDYD- 229
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
A+ +SF VES G ++ ++ I VL++KL +V S
Sbjct: 230 ------------------AQPNSFYIDVESIGTLEPDMIIQQGITVLQRKLASVISSLSG 271
Query: 303 VEADDQFGELGA 314
E D+ G +G
Sbjct: 272 TEGADRNGVMGG 283
>gi|358378283|gb|EHK15965.1| hypothetical protein TRIVIDRAFT_195864 [Trichoderma virens Gv29-8]
Length = 338
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 161/300 (53%), Gaps = 43/300 (14%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG Q P+VKI FEL T+ ANALRR++ AEVPTIAIDLVEIEVNSS
Sbjct: 11 MDGEPEQ--PQVKISAADSTRVDFELSRTNLPFANALRRIIQAEVPTIAIDLVEIEVNSS 68
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL DEFIAHRLGLIPL S+ + +SRDCD + CE CSV L AKC SD+ + V
Sbjct: 69 VLADEFIAHRLGLIPLDSKGVNELNYSRDCDC---EQYCEQCSVSLTLHAKCTSDEIMKV 125
Query: 121 TSKDLYSSD---HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
++DL + +SV DP G G +I KLR+ QEL++ IA+KGI K+H
Sbjct: 126 YARDLVADGRHANSVGTPIITDPEGL-------GCLIAKLRKDQELKITCIAKKGIAKEH 178
Query: 178 AKWSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
AKW P + V F Y+P ++ D+ + + ++ W +S + + + + E
Sbjct: 179 AKWMPTSAVGFEYDPHNKLHHLDMWFENNTDPEKEWPKSKYAQW--------EEPLQEGE 230
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ YD A + F F VE++G ++ ++ I VL+QK+ +
Sbjct: 231 PFDYD-------------------AVPNRFYFEVEASGTMEPDLIIQGGIRVLQQKIGGL 271
>gi|406859740|gb|EKD12803.1| RNA polymerase II subunit 3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 334
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 167/314 (53%), Gaps = 52/314 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P VKI E ++ FEL + D + AN+LRRV++AEVPT+AID VEIE N+SVL DEF+AH
Sbjct: 15 PSVKITEAGANHVDFELENVDLAFANSLRRVIMAEVPTMAIDTVEIEANTSVLADEFLAH 74
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+PL S+ + ++RDC+ + CE CSV L+A+C S++ + V ++DL
Sbjct: 75 RLGLVPLVSKNIEDVNYTRDCEC---ESYCELCSVVLSLQARCTSEEIMKVYARDL---- 127
Query: 130 HSVVPVDFVDPAGYDS-------TDQQR-GIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
VDP + TD+ G +I KLR+GQELR+R IA+KGI K+HAKW+
Sbjct: 128 -------VVDPNRANQYVGNPVITDEDGLGTVICKLRQGQELRMRCIAKKGIAKEHAKWA 180
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
P + V F Y+P + L W E+ P V+ Y
Sbjct: 181 PVSAVAFEYDP----------NNKLRHTDLWYEADP--------------AVEWPKSKYA 216
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 301
D ++ + G+P + A F F VES G ++ ++ I+V++QKL +V +D
Sbjct: 217 D--WEEPQQEGEP--FDYDAVPTKFYFEVESVGNLEPDAIIQQGIKVMQQKLASV--IQD 270
Query: 302 TVEADDQFGELGAH 315
E D+ H
Sbjct: 271 LTEGDEDANGANGH 284
>gi|340505295|gb|EGR31641.1| hypothetical protein IMG5_105540 [Ichthyophthirius multifiliis]
Length = 307
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 172/293 (58%), Gaps = 12/293 (4%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I +L++ F L + + ++AN+LRR+++AEV TIAI V++ N+S L DE+IAHR
Sbjct: 5 KITITDLQEQKVDFILENCEVALANSLRRILLAEVETIAIQNVKVYENTSCLPDEYIAHR 64
Query: 71 LGLIPLTSERAMSMRFSRDCDACDG--DGQ-CEFCSVEFHLRAKCHSDQTLDVTSKDL-- 125
+GLIPL S + + +CD C G +GQ C+ C+V F L+ + + T++VTS DL
Sbjct: 65 VGLIPLISANVDNFNYIWNCD-CKGSSEGQECDRCAVHFVLKVQNQGNTTMEVTSLDLKE 123
Query: 126 ---YSSDHSVVPVDFVDPAGYDSTDQQR-GIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
S + +V PV F QQ GI IVKL + Q++ A KGIGK H+KWS
Sbjct: 124 KFMNSDEDAVRPVKFYSIVPDQMGRQQEVGIPIVKLSKNQQIHFECEAMKGIGKMHSKWS 183
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
+ +F EP I ++D+ + L+ E+K+ V+ P KV++I+ Q+ + + + +
Sbjct: 184 AVSVASFKIEPLIKFSDDI-QQLTREQKKQIVDCCPVKVYEINQENDQLEIANLQKCMFC 242
Query: 242 DE-VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DE V K E + KP L++I ++ FIF VE+TG +K ++ A LK+KL
Sbjct: 243 DECVFKCEEEIKKPKLIKIDHNKNKFIFQVETTGVLKPVDVLNRAFRALKEKL 295
>gi|358365833|dbj|GAA82455.1| RNA polymerase II subunit 3 [Aspergillus kawachii IFO 4308]
Length = 338
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 161/312 (51%), Gaps = 47/312 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L D + AN+LRRVM+AE+PT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLAEIPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLGLIPL S+ + ++RDC+ D C CSV L A+C D + V ++DL S
Sbjct: 72 RLGLIPLVSKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTGDDIMRVYARDLVVS 128
Query: 129 DHSV-----VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
PV +DP G G +I KLRRGQEL++ IA+KGI K+HAKW P
Sbjct: 129 GERANEWVGNPV-ILDPEG-------NGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPT 180
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDD 242
+ + F Y+P H N L W E K + + N G V + + YD
Sbjct: 181 SAIGFEYDP--HNN--------LRHVDYWYEEDAAKEWPVSANAGWEQPVPPDQPFDYD- 229
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
A+ +SF VES G ++ ++ I VL++KL +V S
Sbjct: 230 ------------------AQPNSFYIDVESIGTLEPDMIIQQGITVLQRKLASVISSLSG 271
Query: 303 VEADDQFGELGA 314
E D+ G +G
Sbjct: 272 TEGADRNGVMGG 283
>gi|365760141|gb|EHN01882.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401839643|gb|EJT42771.1| RPB3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 318
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 167/299 (55%), Gaps = 38/299 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDGVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y+P ++ + E S +E W +S + ++ PN G + AEA
Sbjct: 180 YDPWNKLKHTDYWYEQDSAKE---WPQSKNCE-YEDPPNEGDPFDYKAEA---------- 225
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
D+F VES G+I Q+V+ I+ L++K+ ++ L+ ++ D
Sbjct: 226 ----------------DTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 268
>gi|400600522|gb|EJP68196.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 350
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 115/308 (37%), Positives = 158/308 (51%), Gaps = 49/308 (15%)
Query: 1 MDGASYQRF--------PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDL 52
MDG +Y P V + +FEL T+ S AN+LRRV+ AEVPT+AIDL
Sbjct: 1 MDGMNYDPMMVDAEAEQPHVTVLAADTTKVEFELSRTNLSFANSLRRVIQAEVPTVAIDL 60
Query: 53 VEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
VEIE+N+SVL DEFIAHRLGLIPL S+ + +SRDCD + CE CS+ L AKC
Sbjct: 61 VEIEINTSVLADEFIAHRLGLIPLDSKDVDELNYSRDCDC---EQYCEQCSITLTLHAKC 117
Query: 113 HSDQTLDVTSKDLYSSDHSVVPVD---FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
SD+ + V ++DL + DP G G ++ KLRR QELRL+ +A
Sbjct: 118 TSDENMKVYARDLIVDGRHATSIGTPIITDPDGV-------GCLLAKLRRDQELRLKCVA 170
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
+KGI K+HAKW P + V F Y+P ++ D+ K W P + +
Sbjct: 171 KKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFENDTNPKDEW----PVSKYGAWESEE 226
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
Q E + YD AK + F F VE++G ++ Q+V + I V
Sbjct: 227 Q----KNEPFNYD-------------------AKPERFYFDVETSGGMEPDQIVQSGIRV 263
Query: 289 LKQKLDAV 296
L+QK+ +
Sbjct: 264 LQQKIGGL 271
>gi|398364469|ref|NP_012243.3| Rpb3p [Saccharomyces cerevisiae S288c]
gi|730603|sp|P16370.2|RPB3_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=B44.5; AltName:
Full=DNA-directed RNA polymerase II 45 kDa polypeptide
gi|14278326|pdb|1I3Q|C Chain C, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278337|pdb|1I50|C Chain C, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278367|pdb|1I6H|C Chain C, Rna Polymerase Ii Elongation Complex
gi|20150715|pdb|1K83|C Chain C, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749618|pdb|1NIK|C Chain C, Wild Type Rna Polymerase Ii
gi|30749739|pdb|1NT9|C Chain C, Complete 12-Subunit Rna Polymerase Ii
gi|34810555|pdb|1PQV|C Chain C, Rna Polymerase Ii-Tfiis Complex
gi|46015417|pdb|1R5U|C Chain C, Rna Polymerase Ii Tfiib Complex
gi|46015782|pdb|1SFO|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965913|pdb|1R9S|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965925|pdb|1R9T|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966109|pdb|1TWA|C Chain C, Rna Polymerase Ii Complexed With Atp
gi|56966123|pdb|1TWC|C Chain C, Rna Polymerase Ii Complexed With Gtp
gi|56966133|pdb|1TWF|C Chain C, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966143|pdb|1TWG|C Chain C, Rna Polymerase Ii Complexed With Ctp
gi|56966153|pdb|1TWH|C Chain C, Rna Polymerase Ii Complexed With 2'datp
gi|58177166|pdb|1WCM|C Chain C, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679446|pdb|1Y1W|C Chain C, Complete Rna Polymerase Ii Elongation Complex
gi|61679463|pdb|1Y77|C Chain C, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679504|pdb|1Y1V|C Chain C, Refined Rna Polymerase Ii-tfiis Complex
gi|61679517|pdb|1Y1Y|C Chain C, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754245|pdb|2B63|C Chain C, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590856|pdb|2B8K|C Chain C, 12-Subunit Rna Polymerase Ii
gi|122920063|pdb|2E2H|C Chain C, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920078|pdb|2E2I|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920093|pdb|2E2J|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921032|pdb|2NVQ|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921068|pdb|2NVT|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921084|pdb|2NVX|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921099|pdb|2NVY|C Chain C, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921111|pdb|2NVZ|C Chain C, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104676|pdb|2JA5|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104691|pdb|2JA6|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104712|pdb|2JA7|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104724|pdb|2JA7|O Chain O, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104736|pdb|2JA8|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387186|pdb|2YU9|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877775|pdb|2R7Z|C Chain C, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172229|pdb|2R92|C Chain C, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172242|pdb|2R93|C Chain C, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613464|pdb|2VUM|C Chain C, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368736|pdb|3CQZ|C Chain C, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983592|pdb|3FKI|C Chain C, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781918|pdb|3GTG|C Chain C, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781931|pdb|3GTJ|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781944|pdb|3GTK|C Chain C, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781957|pdb|3GTL|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781970|pdb|3GTM|C Chain C, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781984|pdb|3GTO|C Chain C, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781997|pdb|3GTP|C Chain C, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782010|pdb|3GTQ|C Chain C, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104513|pdb|3H3V|D Chain D, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839443|pdb|3HOU|C Chain C, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839458|pdb|3HOU|O Chain O, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839473|pdb|3HOV|C Chain C, Complete Rna Polymerase Ii Elongation Complex Ii
gi|266618767|pdb|3K1F|C Chain C, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914554|pdb|3K7A|C Chain C, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982477|pdb|3M3Y|C Chain C, Rna Polymerase Ii Elongation Complex C
gi|295982490|pdb|3M4O|C Chain C, Rna Polymerase Ii Elongation Complex B
gi|325053965|pdb|3PO2|C Chain C, Arrested Rna Polymerase Ii Elongation Complex
gi|325053980|pdb|3PO3|C Chain C, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634540|pdb|3QT1|C Chain C, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197458|pdb|3RZD|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197470|pdb|3RZO|C Chain C, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197482|pdb|3S14|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197494|pdb|3S15|C Chain C, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197506|pdb|3S16|C Chain C, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197518|pdb|3S17|C Chain C, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197530|pdb|3S1M|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197542|pdb|3S1N|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197554|pdb|3S1Q|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197566|pdb|3S1R|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197578|pdb|3S2D|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781199|pdb|3S2H|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380838|pdb|4A3C|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546292|pdb|4A3B|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546310|pdb|4A3D|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546327|pdb|4A3E|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546344|pdb|4A3F|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546361|pdb|4A3J|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546378|pdb|4A3K|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546394|pdb|4A3L|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546411|pdb|4A3M|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977881|pdb|4A3G|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977896|pdb|4A3I|C Chain C, Rna Polymerase Ii Binary Complex With Dna
gi|380764981|pdb|4A93|C Chain C, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145448|pdb|4BBR|C Chain C, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145461|pdb|4BBS|C Chain C, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|599978|emb|CAA86971.1| RNA polymerase II [Saccharomyces cerevisiae]
gi|151943136|gb|EDN61471.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190406243|gb|EDV09510.1| RNA polymerase II 45 kDa subunit [Saccharomyces cerevisiae RM11-1a]
gi|207344276|gb|EDZ71474.1| YIL021Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272154|gb|EEU07153.1| Rpb3p [Saccharomyces cerevisiae JAY291]
gi|259147237|emb|CAY80490.1| Rpb3p [Saccharomyces cerevisiae EC1118]
gi|285812625|tpg|DAA08524.1| TPA: Rpb3p [Saccharomyces cerevisiae S288c]
gi|323333059|gb|EGA74460.1| Rpb3p [Saccharomyces cerevisiae AWRI796]
gi|323354620|gb|EGA86456.1| Rpb3p [Saccharomyces cerevisiae VL3]
gi|349578928|dbj|GAA24092.1| K7_Rpb3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765154|gb|EHN06668.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298697|gb|EIW09793.1| Rpb3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 318
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 167/299 (55%), Gaps = 38/299 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y+P ++ + E S +E W +S + ++ PN G + A+A
Sbjct: 180 YDPWNKLKHTDYWYEQDSAKE---WPQSKNCE-YEDPPNEGDPFDYKAQA---------- 225
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
D+F VES G+I Q+V+ I+ L++K+ ++ L+ ++ D
Sbjct: 226 ----------------DTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 268
>gi|257471948|pdb|3I4M|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471963|pdb|3I4N|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
Length = 324
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 167/299 (55%), Gaps = 38/299 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 12 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 71
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL
Sbjct: 72 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 128
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 129 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 185
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y+P ++ + E S +E W +S + ++ PN G + A+A
Sbjct: 186 YDPWNKLKHTDYWYEQDSAKE---WPQSKNCE-YEDPPNEGDPFDYKAQA---------- 231
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
D+F VES G+I Q+V+ I+ L++K+ ++ L+ ++ D
Sbjct: 232 ----------------DTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 274
>gi|310794498|gb|EFQ29959.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 339
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 158/288 (54%), Gaps = 42/288 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P +KI + + F+L + D S AN+LRRV+ AEVP IAIDLVEIE N+SVL DEFIAH
Sbjct: 15 PSIKISGADNIHVNFDLSNCDLSFANSLRRVIQAEVPVIAIDLVEIEANTSVLADEFIAH 74
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL---- 125
RLGLIPL S+ S+ ++RDCD + C+ CSV+ L A+C SD T+ V + DL
Sbjct: 75 RLGLIPLQSKDVNSLLYTRDCDC---EQYCDNCSVKLTLHARCSSDDTMKVYASDLIVDS 131
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
+ + +V +DP G +G +I KLR+GQEL++ IA+KGI K+HAKW P +
Sbjct: 132 FRQNGTVGNPVILDPEG-------QGSLICKLRKGQELKISCIAKKGIAKEHAKWMPTSA 184
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
V F Y+P ++ L + K W +S K+ D P G + DA
Sbjct: 185 VGFEYDPHNKLHH-LDMWYEEDAKAEWPDSKYAKMED-PPQEGDPFDYDA---------- 232
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
PG F F VE G+++ Q++ I++L++KL
Sbjct: 233 -------VPG---------KFYFEVEGVGSLEPDQIIQEGIKILQEKL 264
>gi|401625294|gb|EJS43310.1| rpb3p [Saccharomyces arboricola H-6]
Length = 318
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 159/290 (54%), Gaps = 34/290 (11%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V KDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYGKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E K + N Y+D A
Sbjct: 180 YDP----------WNKLKHTDYWYEQDSAKEWPQSKNC-----------EYED-----AP 213
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
G P + A+ D+F VES G+I Q+V+ I+ L++K+ ++ L+
Sbjct: 214 NEGDP--FDYKAEADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLA 261
>gi|254839488|pdb|3HOW|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839503|pdb|3HOX|C Chain C, Complete Rna Polymerase Ii Elongation Complex V
gi|254839518|pdb|3HOY|C Chain C, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839533|pdb|3HOZ|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
Length = 347
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 167/299 (55%), Gaps = 38/299 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 35 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 94
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL
Sbjct: 95 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 151
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 152 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 208
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y+P ++ + E S +E W +S + ++ PN G + A+A
Sbjct: 209 YDPWNKLKHTDYWYEQDSAKE---WPQSKNCE-YEDPPNEGDPFDYKAQA---------- 254
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
D+F VES G+I Q+V+ I+ L++K+ ++ L+ ++ D
Sbjct: 255 ----------------DTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 297
>gi|341882009|gb|EGT37944.1| hypothetical protein CAEBREN_16087 [Caenorhabditis brenneri]
gi|341882040|gb|EGT37975.1| hypothetical protein CAEBREN_14407 [Caenorhabditis brenneri]
Length = 281
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 59/310 (19%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V++ EL +D KF L DTD S+AN+LRRV +AEVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNVEVTELSNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIP S+ + M+++R+C+ + C+ CS+ F L+ KC + TL VT++
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRECECAEF---CDECSIPFILQMKCKDEATLAVTTEH 119
Query: 125 L--YSSDHSVVPVDFVDPAGYDSTDQQRG-----------IIIVKLRRGQELRLRAIARK 171
L D +V P ++RG I+IVKLR+GQEL L+A A+K
Sbjct: 120 LIPLKDDTTVRP-------ACGKALRERGSAREEFHNREEILIVKLRKGQELNLKAYAKK 172
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY 231
G GK+HAKW+P V F Y+P+ + + S+ + W S + +
Sbjct: 173 GFGKEHAKWNPTTGVAFEYDPDNALRHTIYPSV-----EEWPRSDHSSL----------- 216
Query: 232 VVDAEAYTYDDEVIKKA--EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
+D V K+A + GKP + F F++E TG++ A ++V I +L
Sbjct: 217 --------PEDSVEKEAPFDPHGKP---------NKFWFSIEGTGSLPAQRIVTMGIGIL 259
Query: 290 KQKLDAVRLS 299
K+KL+ + ++
Sbjct: 260 KRKLEELNMA 269
>gi|86560996|ref|NP_492361.2| Protein RPB-3 [Caenorhabditis elegans]
gi|74834695|emb|CAB02268.2| Protein RPB-3 [Caenorhabditis elegans]
Length = 282
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 42/302 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P +++ EL +D KF L DTD S+AN+LRRV +AEVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIP S+ + M+++RDC+ + C+ CS+ F L+ KC + TL VT++
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAEF---CDECSIPFILQMKCKDEATLAVTTEH 119
Query: 125 L---YSSDHSVVPV--DFVDPAG--YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
L ++ D +V P + G D + I+IVKLR+GQEL L+A +KG GK+H
Sbjct: 120 LMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFGKEH 179
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA 237
AKW+P V F Y+P+ + I PN E
Sbjct: 180 AKWNPTCGVAFEYDPDNALRH-----------------------TIYPN--------VEE 208
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ D ++ K E K + F F++E TGA+ A ++V I +LK+KL+ +
Sbjct: 209 WPRSDHSSLPEDSTEKEAPFEPDNKPNKFWFSIEGTGALPAQRIVTMGIGILKRKLEELN 268
Query: 298 LS 299
++
Sbjct: 269 MA 270
>gi|340517857|gb|EGR48100.1| predicted protein [Trichoderma reesei QM6a]
Length = 375
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 162/300 (54%), Gaps = 43/300 (14%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
+DG Q P+VKI FEL T+ ANALRRV+ AEVPTIAIDLVE+EVNSS
Sbjct: 11 IDGEPEQ--PQVKISAADSTRVDFELSRTNLPFANALRRVIQAEVPTIAIDLVEMEVNSS 68
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL DEFIAHRLGLIPL S+ + +SRDCD + CE CSV L AKC SD+ + V
Sbjct: 69 VLADEFIAHRLGLIPLDSKGVNELNYSRDCDC---EQYCEQCSVSLTLHAKCTSDEIMKV 125
Query: 121 TSKDLYSSD---HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
++DL +SV DP G G +I KLR+ QEL++ IA+KGI K+H
Sbjct: 126 YARDLVVDGRHANSVGSPIITDPDGL-------GCLIAKLRKDQELKITCIAKKGIAKEH 178
Query: 178 AKWSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
AKW P + V F Y+P ++ D+ + + ++ W +S + ++ P G E
Sbjct: 179 AKWMPTSAVGFEYDPHNKLHHMDMWFENNTDPEKEWPKSKYAE-WEEPPQEG-------E 230
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ YD A + F F VE++G ++ ++ I VL+QK+ A+
Sbjct: 231 PFDYD-------------------AVPNRFYFEVEASGTMEPDLIIQGGIRVLQQKIGAL 271
>gi|172213|gb|AAA34889.1| RNA polymerase II (EC 2.7.7.6) [Saccharomyces cerevisiae]
Length = 318
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 167/299 (55%), Gaps = 38/299 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAGIEFE 179
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y+P ++ + E S +E W +S + ++ PN G + A+A
Sbjct: 180 YDPWNKLKHTDYWYEQDSAKE---WPQSKNCE-YEDPPNEGDPFDYKAQA---------- 225
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
D+F VES G+I Q+V+ I+ L++K+ ++ L+ ++ D
Sbjct: 226 ----------------DTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 268
>gi|319411912|emb|CBQ73955.1| related to RPB3-DNA-directed RNA polymerase II chain [Sporisorium
reilianum SRZ2]
Length = 350
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 173/327 (52%), Gaps = 52/327 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK+ +R+L D+A F L + D S AN+LRR+MIA++PT+AID+VE+ N++VL DEF+AH
Sbjct: 12 PKITVRQLNRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEVRNNTTVLPDEFLAH 71
Query: 70 RLGLIPLTS-ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG+IPL S + A ++ RDC DG C+ CSVE LRA+C + L+VTS+DL S
Sbjct: 72 RLGMIPLLSMDCAKALVDHRDCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 129 D--------------HSVVP--VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKG 172
D P DF P G+D + I++VK+ +GQEL LR IARKG
Sbjct: 129 DTIESATIYDDDAMAEPAAPKHPDFGRPVGHDGSTPP--IMLVKMSKGQELDLRCIARKG 186
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
K+HAKWSP + V F Y+P + + KQ W E + + F+ P G +
Sbjct: 187 FAKEHAKWSPCSAVGFEYDPHNALRHTTY-WYEFDAKQEWPEGANAE-FEEPPQEGAPF- 243
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ K + F F VE++G++ +++V + +L+ +
Sbjct: 244 -------------------------DYNKKANKFYFDVEASGSMHPAEIVETGLGLLEYR 278
Query: 293 LDAVRLSEDTVEADDQFGELGAHMRGG 319
+ ++ ++ D+Q G A + G
Sbjct: 279 V--AQIVQELSMLDEQPGGAAAGIDNG 303
>gi|308499659|ref|XP_003112015.1| CRE-RPB-3 protein [Caenorhabditis remanei]
gi|308268496|gb|EFP12449.1| CRE-RPB-3 protein [Caenorhabditis remanei]
Length = 297
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 166/317 (52%), Gaps = 57/317 (17%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P +++ EL +D KF L DTD S+AN+LRRV +AEVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELSNDLMKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIP S+ + M+++R+C+ + C+ CS+ F L+ KC + TL VT+ D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRECECAEF---CDECSIPFILQMKCKDEATLAVTTAD 119
Query: 125 LYSSDHSVVPV------------DFVDPA----------GYDSTDQQRGIIIVKLRRGQE 162
L ++ V V V PA G + + I+IVKLR+GQE
Sbjct: 120 LRCMNNDTVIVCSKKVVTILACFQTVRPACGKALRERGTGREDFHNREEILIVKLRKGQE 179
Query: 163 LRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFD 222
L L+A A+KG GK+HAKW+P V F Y+P+ +
Sbjct: 180 LNLKAYAKKGFGKEHAKWNPTCGVAFEYDPDNALRH-----------------------T 216
Query: 223 IDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
I PN E + D ++ K + K + F F++E TGA+ ++V
Sbjct: 217 IYPN--------VEEWPRSDHSALPEDSTEKEAPFDQDGKPNKFFFSIEGTGALPVQRIV 268
Query: 283 LNAIEVLKQKLDAVRLS 299
I +LK+KL+ + ++
Sbjct: 269 TMGIGILKKKLEELNMA 285
>gi|336371374|gb|EGN99713.1| hypothetical protein SERLA73DRAFT_88301 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384130|gb|EGO25278.1| DNA-directed RNA polymerase II, subunit 3 [Serpula lacrymans var.
lacrymans S7.9]
Length = 400
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 159/298 (53%), Gaps = 46/298 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IRE+K D F L + D + AN++RR ++A++PTIAID+VEIE N++VL DEFIAH
Sbjct: 9 PTVRIREVKKDRVNFVLENVDLAFANSVRRAVMADIPTIAIDIVEIEANTTVLPDEFIAH 68
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG++PL S +R++RDC G C++CS+E L CH ++T++VTS L
Sbjct: 69 RLGMVPLVSANCEEGIRYTRDCTCLSG---CQYCSIELRLDVACHENRTMEVTSNHLDVV 125
Query: 129 D-HSVV------------PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGK 175
D H+ +F P G D ++I K+R+GQEL+LR IA+KGI K
Sbjct: 126 DSHTYADEGEAGEELTKRGENFGHPVGKDDVSLPP-VLICKMRKGQELKLRCIAKKGIAK 184
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA 235
+HAKWSP + V+F Y+P N+ L W E+ + + N +
Sbjct: 185 EHAKWSPCSAVSFEYDP---YNK-------LRHTTHWFETDERAEWPLSENAKE------ 228
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
E DDEV + AK F F VE+ G++ + V+ + L+ KL
Sbjct: 229 EEPPRDDEVF------------DFNAKPGKFYFEVETDGSLGPQEAVMRGLAELQTKL 274
>gi|50290755|ref|XP_447810.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527121|emb|CAG60759.1| unnamed protein product [Candida glabrata]
Length = 312
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 159/290 (54%), Gaps = 34/290 (11%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D ++AN+LRRVMIAE+PT+AID VE+E N++VL DEF+AH
Sbjct: 6 PQVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYSRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDLLIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L IA+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCIAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E DI Q + E DDE
Sbjct: 180 YDP----------WNKLQHTDYWYEE------DIRKEWPQSKNCEYEDPPNDDEPF---- 219
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
+ AK D+F VE+ G+I Q+VL I+ L++K+ ++ L+
Sbjct: 220 --------DYKAKADTFYMNVEAVGSIAVDQVVLRGIDTLQKKVASIMLA 261
>gi|443895704|dbj|GAC73049.1| RNA polymerase II, subunit POLR2C/RPB3 [Pseudozyma antarctica T-34]
Length = 346
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 169/327 (51%), Gaps = 52/327 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK+ +R+L D A F L + D S AN+LRR+MIA++PT+AID+VEI N++VL DEF+AH
Sbjct: 15 PKITVRQLNRDRANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEFLAH 74
Query: 70 RLGLIPLTS-ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLGLIPL S + A ++ RDC DG C+ CSVE LRA+C + L+VTS+DL S
Sbjct: 75 RLGLIPLLSMDCAKALVDHRDCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRS 131
Query: 129 D--------------HSVVP--VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKG 172
D P DF P G+D + I++VK+ +GQEL +R IARKG
Sbjct: 132 DSIEGAQMFDDDAMNEPAAPKHPDFGRPVGHDGS--MAPIMLVKMSKGQELDIRCIARKG 189
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
K+HAKWSP + V F Y+P + + KQ W E P + P G +
Sbjct: 190 FAKEHAKWSPCSAVGFEYDPHNALRHTTY-WYEYDAKQEWPE-GPNAELEEPPQEGAPF- 246
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ K + F F VES+G++ +++V + +L+ +
Sbjct: 247 -------------------------DYNKKANRFYFDVESSGSMHPAEIVETGLGLLEYR 281
Query: 293 LDAVRLSEDTVEADDQFGELGAHMRGG 319
+ ++ ++ D+Q G M G
Sbjct: 282 V--AQIVQELSMMDEQPGAGAGGMENG 306
>gi|428184897|gb|EKX53751.1| hypothetical protein GUITHDRAFT_100722 [Guillardia theta CCMP2712]
Length = 319
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 175/334 (52%), Gaps = 57/334 (17%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P +++ L D F L +TD S+ANALR+ +I+EVPTIAIDLVEIE NSSVL DEFI
Sbjct: 5 RTPLIEVNFLDDYNINFVLSNTDVSIANALRKAIISEVPTIAIDLVEIEENSSVLADEFI 64
Query: 68 AHRLGLIPLTSERAMS--------------MRFSRDCDACDGDGQCEFCSVEFHLRAKCH 113
AHRLGLIPL S RAM F +A D D CE ++F L +
Sbjct: 65 AHRLGLIPLVSTRAMHADGPVPFRDVEGNITSFLWHHEASD-DKDCE---IKFELEVRNT 120
Query: 114 SDQTLDV-----TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
D ++V ++ V PV++ D + ++I KL+R Q ++L AI
Sbjct: 121 EDNPMEVRLILIRLLEVLRHGGGVKPVEY---------DPEYPVVIAKLKRNQAIKLTAI 171
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
A+KG+GK H+KWSPA+ V F YEP + IN + ME LS +++++WVE+ P + + TG
Sbjct: 172 AKKGVGKMHSKWSPASGVYFTYEPVVTINYERMEGLSAQQRKTWVEACPPGILRFNEMTG 231
Query: 229 QVYVVD----------------AEAYTYD--DEVIKKAEAMGKPGLVEIYAKEDSFIFTV 270
QV V D E + YD D ++ K ++ G G D F F V
Sbjct: 232 QVEVEDEINNGIAFSGECEKVAKELFGYDFYDLIVIKPKS-GSDGY------PDRFNFFV 284
Query: 271 ESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
E+ GA+ LV AI L +K+ + S T E
Sbjct: 285 ETNGALDPVTLVRAAIWELVRKVQNIEESLRTGE 318
>gi|346972452|gb|EGY15904.1| DNA-directed RNA polymerase II subunit RPB3 [Verticillium dahliae
VdLs.17]
Length = 342
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 162/302 (53%), Gaps = 45/302 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P VKI + D F L + S AN+LRRV+ AEVP +AIDLVEIE N+SVL DEFIAH
Sbjct: 15 PSVKISNTEADRVVFNLSNCHLSFANSLRRVIQAEVPIVAIDLVEIEANTSVLADEFIAH 74
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL---- 125
RLGLIPL S+ A S+ +SRDCD + C+ CSV+ L A+C SD + V + DL
Sbjct: 75 RLGLIPLHSKEAASLHYSRDCDC---EQYCDNCSVKLTLHARCTSDDIMKVYASDLVVDS 131
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
+ +++V DP G G +I KLRRGQEL++ IA+KGI K+HAKW P +
Sbjct: 132 FRQNNTVGNPVITDPDGL-------GSLIAKLRRGQELKVTCIAKKGIAKEHAKWMPTSA 184
Query: 186 VTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P ++ DL + W +S D P G+ + DA
Sbjct: 185 VGFEYDPHNKLHHIDLW--YETDAATEWPKSRNADQED-PPQEGEPFDFDA--------- 232
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
KPG F F VE+ G++ Q++ I+++++KL A+ L T E
Sbjct: 233 --------KPG---------RFYFDVETVGSLDPDQIIQEGIKIMQEKL-ALMLHTLTGE 274
Query: 305 AD 306
A+
Sbjct: 275 AE 276
>gi|353251635|pdb|3J0K|C Chain C, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 268
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 166/299 (55%), Gaps = 38/299 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y+P ++ + E S +E W +S + D PN G + A+A
Sbjct: 180 YDPWNKLKHTDYWYEQDSAKE---WPQSKNCEYED-PPNEGDPFDYKAQA---------- 225
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
D+F VES G+I Q+V+ I+ L++K+ ++ L+ ++ D
Sbjct: 226 ----------------DTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 268
>gi|323308700|gb|EGA61941.1| Rpb3p [Saccharomyces cerevisiae FostersO]
Length = 318
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 166/299 (55%), Gaps = 38/299 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMI E+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIXEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y+P ++ + E S +E W +S + ++ PN G + A+A
Sbjct: 180 YDPWNKLKHTDYWYEQDSAKE---WPQSKNCE-YEDPPNEGDPFDYKAQA---------- 225
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
D+F VES G+I Q+V+ I+ L++K+ ++ L+ ++ D
Sbjct: 226 ----------------DTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 268
>gi|401416108|ref|XP_003872549.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488773|emb|CBZ24020.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 337
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 157/284 (55%), Gaps = 19/284 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+L + D+S ANALRRVM+AE+PT+AI+ V I N+SVL DE IAHRLGL+PL S +A
Sbjct: 21 FQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSGKAKR 80
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
+ F +DC C G G C C + L+ +C +Q SK ++ D + D Y
Sbjct: 81 LNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDS----LQIDDAEVY 130
Query: 144 DSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMES 203
+ ++ GI +V L R Q L L + RK I K HAK+ P ATV Y PEI +N + ++
Sbjct: 131 PVSAEEHGIWLVTLGRSQVLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNLNGFQT 190
Query: 204 LSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGK--PGLVEIYA 261
L + + WV P VF TGQV V D +A + E + + LV +
Sbjct: 191 LGKAKAREWVARCPRNVFRFVERTGQVEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQ 250
Query: 262 KEDS-----FIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
K++ F FTVESTG + Q+V +A+ V+++KL R+SE
Sbjct: 251 KKNKMGYFDFTFTVESTGVLPVLQIVYDAVAVVRKKLQ--RVSE 292
>gi|226490156|emb|CAX69320.1| DNA-directed RNA polymerase II subunit C [Schistosoma japonicum]
Length = 266
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 159/289 (55%), Gaps = 38/289 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V + ++ KF L +TD S+ANA+RRV IAEVPT+AID V+IE N+++LNDE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEENNTMLNDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIA R+GLIPLT + + M + R+C + CE CSVE L C +D VT D
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCREF---CEQCSVELTLDVCCTTDAPRHVTGAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L SS+ V PV D A S Q I+IVK+R+GQ L+LRAIA+KG GK+HAKW+P A
Sbjct: 120 LISSNRDVQPVPSRD-ADESSYVGQESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNPTA 178
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P ++ + L + + W P + P ++E
Sbjct: 179 GVGFEYDP-----DNALRHTFLHKPEEW----PRSEYSTLP---------------ENEH 214
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ GKP + F F +E+ G+++ ++ +++ VLK+KL
Sbjct: 215 QAPYDPTGKP---------NRFSFNIETCGSLQPKAIIFSSLTVLKRKL 254
>gi|254582264|ref|XP_002497117.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
gi|238940009|emb|CAR28184.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
Length = 308
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 167/307 (54%), Gaps = 34/307 (11%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE + F L + +MAN+LRRVMIAE+PT+AID VE+E N+SVL DEFIAH
Sbjct: 6 PQVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + + RDC D C+ CSV L+A S+ T +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYCRDCFCED---HCDKCSVVLTLQAIGESESTTNVYAKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL L+ +A+KGI K+HAKW P+A + F
Sbjct: 123 N-LMGRNLGHPIIQDK--EGNGVLICKLRKGQELTLKCVAKKGIAKEHAKWGPSAAIEFE 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ + W E P K + + N+ Y+D
Sbjct: 180 YDP----------WNKLKHTEYWHEQDPAKEWPLSKNS-----------EYED-----PP 213
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADDQF 309
G+P + A ++F VES G++ Q+VL I+ L++K+ ++ L+ ++ D
Sbjct: 214 NEGEP--FDYRATANTFYMNVESVGSLSTDQVVLRGIDTLQKKVASILLALTQMDQDKVN 271
Query: 310 GELGAHM 316
GA M
Sbjct: 272 FASGAPM 278
>gi|336261545|ref|XP_003345560.1| hypothetical protein SMAC_06213 [Sordaria macrospora k-hell]
gi|380094769|emb|CCC07270.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 311
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 131/217 (60%), Gaps = 26/217 (11%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P VKI + KFEL +T+ AN+LRRVM+AE+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADSTRVKFELSNTELCFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL +E + +SRDCD D CE CSV +L AKC D + V ++DL
Sbjct: 76 RLGLIPLNAEGIDQLLYSRDCDC---DEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVG 132
Query: 130 HSV-----VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
V P+ DP G +G +I+KLR GQE++L+ IA+KGI K+H+KW+P+A
Sbjct: 133 DRVNQVLGSPI-INDPEG-------QGPLILKLRHGQEIKLQCIAKKGIAKEHSKWAPSA 184
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF 221
+ F Y+P + + L L W E P K +
Sbjct: 185 AIGFEYDP-----HNKLHHLDL-----WYEQDPKKEW 211
>gi|392593588|gb|EIW82913.1| insert subdomain of RNA polymerase alpha subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 418
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 165/320 (51%), Gaps = 57/320 (17%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P +KIRE+K D F L + D ++AN++RRV++A++PT+AID+VE++ N++VL DEFIAH
Sbjct: 9 PILKIREVKKDSVNFTLENVDLALANSIRRVVMADIPTVAIDMVEVQANTTVLPDEFIAH 68
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG++PL S +MR RDC +G C+FCS+E L CH ++TL+VTS L
Sbjct: 69 RLGMVPLVSTNCDEAMRLLRDCTCEEG---CQFCSIELRLDISCHDNRTLEVTSNHL--- 122
Query: 129 DHSVVPVDFVD-------------------PAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
VVP F D P G + Q ++I K+R+GQELR++ IA
Sbjct: 123 --EVVPFPFQDTAESLSGDELSKRSEDFGHPVGKNDPSAQP-VLICKMRKGQELRIKCIA 179
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
+KGI K+HAKWSP + V F Y+P N+ L W E+ + + N +
Sbjct: 180 KKGIAKEHAKWSPCSAVAFEYDP---YNK-------LRHTTYWFEADERAEWPVSENAKE 229
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
E +DEV + AK F VE+ G++ ++++ + L
Sbjct: 230 ------EDAPREDEVF------------DYNAKPRKFYLEVETDGSLGPQEVMMKGLTEL 271
Query: 290 KQKLDAVRLSEDTVEADDQF 309
+ KL + L D F
Sbjct: 272 QTKLANLILGLKAPPDSDMF 291
>gi|366993697|ref|XP_003676613.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
gi|342302480|emb|CCC70253.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
Length = 318
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 161/293 (54%), Gaps = 40/293 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D ++AN+ RRVMIAE+PT+AID V+IE N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSFRRVMIAEIPTLAIDSVQIETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V +KDL
Sbjct: 66 RLGLIPLQSLDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYAKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL++ IA+KGI K+HAKW PAA + F
Sbjct: 123 N-LLGRNIGHPIIQDR--EGNGVLICKLRKGQELKITCIAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E TK + PN+ K E
Sbjct: 180 YDP----------WNKLKHTDYWYEQDATKEW---PNS------------------KNCE 208
Query: 250 AMGKPGLVEIY---AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
P E++ AK ++F VE+ G+I Q+V+ ++ L++K+ ++ L+
Sbjct: 209 YEDPPNEGELFDYKAKAETFYMNVETVGSIPVDQVVVRGVDTLQKKVASILLA 261
>gi|213405883|ref|XP_002173713.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
gi|212001760|gb|EEB07420.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
Length = 308
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 155/289 (53%), Gaps = 42/289 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V I+ + + +F L +TD S+AN+LRRV++ E+PT+AIDLVEI VN+SV+ DEF+AH
Sbjct: 5 PNVTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAH 64
Query: 70 RLGLIPLTSER-----AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
RLG+IPL S + + ++R+CD D C CSVE L AKC D T++V ++D
Sbjct: 65 RLGMIPLNSNNIDEPPPVGLEYTRNCDC---DQYCNKCSVELSLNAKCTGDGTMEVYARD 121
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L +S P D+ + G +I+KLR+ QE+ LR IA+KGI K+HAKWSP A
Sbjct: 122 LVVDSNST----LGQPVLADA--RSHGPLILKLRKEQEVSLRCIAKKGIAKEHAKWSPTA 175
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V+F Y+P L+ W E+ D D + D E + E
Sbjct: 176 AVSFEYDP----------WNKLKHTDYWFET------DADEEWPKSKNADWEEPPREGET 219
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ A+ F VE G+I +Q++L I VL++KL
Sbjct: 220 F------------DYNAQPRKFYMEVEGVGSIPPNQIILQGIRVLQEKL 256
>gi|256089309|ref|XP_002580754.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
gi|350646602|emb|CCD58722.1| DNA-directed rna polymerase II subunit,putative [Schistosoma
mansoni]
Length = 266
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 158/289 (54%), Gaps = 38/289 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V + ++ KF L +TD S+ANA+RRV IAEVPT+AID V+IE N+++LNDE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIA R+GLIPLT + + M + R+C + CE CSVE L C +D VT D
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCREF---CEQCSVELTLDVCCTTDAPRHVTGAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L SS+ V PV D A S Q I+IVK+R+GQ L+LRAIA+KG GK+HAKW+P A
Sbjct: 120 LISSNRDVQPVPSRD-ADESSYVGQESILIVKMRKGQRLKLRAIAKKGFGKEHAKWNPTA 178
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P ++ + L + + W P + P ++E
Sbjct: 179 GVGFEYDP-----DNALRHTFLHKPEEW----PRSEYSTLP---------------ENEH 214
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ GKP + F F +E+ G+++ ++ + + VLK+KL
Sbjct: 215 QAPYDPTGKP---------NRFYFNIETCGSLQPRAIIFSGLTVLKRKL 254
>gi|121715950|ref|XP_001275584.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
gi|119403741|gb|EAW14158.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
Length = 333
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 157/294 (53%), Gaps = 47/294 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + + F+L D + AN+LRRV++AEVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYHVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ + ++RDCD D +C CSV L A+C D+ + V ++DL
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCDCED---RCARCSVTLTLHARCTGDEIMPVYARDLVVT 128
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV DP G +G +I KLRRGQEL++ IA+KG+ K+HAKW+P
Sbjct: 129 GERANEWVGTPV-LTDPEG-------KGSLICKLRRGQELKMTCIAKKGMAKEHAKWAPT 180
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDD 242
A V F Y+P H N L W E P K + I N + + + YD
Sbjct: 181 AAVGFEYDP--HNN--------LRHVDYWYEEDPIKEWPISQNAAWEHAAPPDQPFDYD- 229
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
A ++F VES G + ++ I VL++KL V
Sbjct: 230 ------------------ATPNNFYIDVESIGNLDPDTIIQQGIVVLQRKLATV 265
>gi|71031829|ref|XP_765556.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68352513|gb|EAN33273.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 354
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 169/321 (52%), Gaps = 35/321 (10%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MD A Q P ++I +L+ D F L ++D S ANA+RRV+++E+P++AI++V + N+S
Sbjct: 1 MDWAPRQIKPSIEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL+DE+I+HRLGL+P+ S A F C D +C C+V++ L C + V
Sbjct: 61 VLHDEYISHRLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCKDSDSRVV 117
Query: 121 TSKDLYSSD-HS--------VVPVDFVDPAGYD-STDQQRGIIIVKLRRGQELRLRAIAR 170
T D+ D HS +P+ D ++ +TD GI IVKL+RG + ++ A
Sbjct: 118 THFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATD---GIPIVKLKRGHSINMKLTAS 174
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFD-------- 222
KG+GK HAKW A V + EP N LME LS EEK S P VF
Sbjct: 175 KGLGKFHAKWI-VANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRNVFKYTGVRSEA 233
Query: 223 ---IDP-------NTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVES 272
+ P + ++VVD A Y DE I +G L+ I E F FT+ES
Sbjct: 234 PSFLGPSDKTFKLDAAGLHVVDKLACIYCDECINYCRELGHKDLIRIQPDESKFHFTIES 293
Query: 273 TGAIKASQLVLNAIEVLKQKL 293
TGAI +++ A+ VL++KL
Sbjct: 294 TGAIPPEKILEIALVVLEKKL 314
>gi|367017650|ref|XP_003683323.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
gi|359750987|emb|CCE94112.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
Length = 311
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 159/290 (54%), Gaps = 34/290 (11%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L D +MAN+LRR+M+AE+PT+AID VEIE N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSQVDLAMANSLRRIMMAEIPTLAIDSVEIETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + + RDC D C+ CSV L+A S+ T +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYCRDCFCED---HCDKCSVVLTLQAIGESESTTNVYAKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL ++ +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELSMKCVAKKGISKEHAKWGPAAAIEFE 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E +K + + N+ Y+D
Sbjct: 180 YDP----------WNKLKHTDYWYEQDISKEWPLSKNS-----------EYED------- 211
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
K + AK ++F VE+ G+I Q+VL I+ L++K+ ++ L+
Sbjct: 212 PPNKDDAFDYKAKANTFYMNVETVGSIATDQVVLRGIDTLQKKVASILLA 261
>gi|342180433|emb|CCC89910.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 392
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 173/318 (54%), Gaps = 29/318 (9%)
Query: 3 GASYQRFPKVKIRELKD------DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIE 56
G S+ KVKI + K + F+L + D S AN LRRV++AEVP +A+ V I
Sbjct: 54 GKSFVSLMKVKIVDCKKHEHSAGETLVFQLDEVDNSFANGLRRVLLAEVPVLAVVSVTIV 113
Query: 57 VNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ 116
N+SVL DE IAHR+GL+PL S +A M+ + DC C G G C C + ++ +C SD+
Sbjct: 114 QNTSVLPDEMIAHRIGLVPLYSMKAREMQLAGDC-LCGGLG-CIKCQITGEMKVRCPSDR 171
Query: 117 -TLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGK 175
+L V + L D V PV + ++RG+ ++ L R QEL LR + RK I K
Sbjct: 172 HSLQVFTDSLKIDDEQVYPV----------SSEERGVWLLTLGRSQELDLRILIRKSIAK 221
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA 235
HAK+ P +TV+ Y PE+ +NED++ SL E+++ W+E + D T + + +
Sbjct: 222 AHAKFMPVSTVSMRYAPEVVLNEDVISSLEPEQRRQWLECCKHRARRTDGQTEEFNITNL 281
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDS-----FIFTVESTGAIKASQLVLNAIEVLK 290
E A +P LV + K D F FTVESTG + Q++ +AI+VL+
Sbjct: 282 CVECLLKE--PSVTAFTEP-LVLVRPKRDQRGYYYFTFTVESTGVLPVLQMMYDAIDVLR 338
Query: 291 QKLDAVR--LSEDTVEAD 306
+KL+ VR L+E V D
Sbjct: 339 KKLERVRDGLTERVVYGD 356
>gi|322701809|gb|EFY93557.1| RNA polymerase II subunit 3 [Metarhizium acridum CQMa 102]
Length = 362
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 152/278 (54%), Gaps = 43/278 (15%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F L T+ S AN++RR++ AEVPTIAIDLVE+EVN+SVL DEFIAHRLGLIPL ++
Sbjct: 40 FALSRTNLSFANSIRRIIQAEVPTIAIDLVEVEVNTSVLADEFIAHRLGLIPLNAKGVNE 99
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY----SSDHSVVPVDFVD 139
+ +SRDCD + CE CSV L A+C SD+ + V ++DL + PV D
Sbjct: 100 LNYSRDCDC---EQYCEQCSVTLTLHARCTSDEIMKVYARDLIVDGRHASQVGTPV-IND 155
Query: 140 PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE- 198
P G G +I KLR+ QEL+L IA+KGI K+HAKW P + V F Y+P ++
Sbjct: 156 PEGM-------GCLIAKLRKDQELKLTCIAKKGIAKEHAKWMPTSAVGFEYDPHNKLHHL 208
Query: 199 DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVE 258
DL + + ++ W +S + D D E + YD
Sbjct: 209 DLWYENNTDPQKEWPKSKYAEWEDPP--------QDGEPFNYD----------------- 243
Query: 259 IYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
A D F F VE++G+++ Q+V I L+QK+ A+
Sbjct: 244 --AVPDRFYFEVETSGSMEPDQIVQGGIRALQQKIGAL 279
>gi|322710646|gb|EFZ02220.1| RNA polymerase II subunit 3 [Metarhizium anisopliae ARSEF 23]
Length = 362
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 152/278 (54%), Gaps = 43/278 (15%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F L T+ S AN++RR++ AEVPTIAIDLVE+EVN+SVL DEFIAHRLGLIPL ++
Sbjct: 40 FALSRTNLSFANSIRRIIQAEVPTIAIDLVEVEVNTSVLADEFIAHRLGLIPLNAKGVNE 99
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY----SSDHSVVPVDFVD 139
+ +SRDCD + CE CSV L A+C SD+ + V ++DL + PV D
Sbjct: 100 LNYSRDCDC---EQYCEQCSVTLTLHARCTSDEIMKVYARDLIVDGRHASQVGTPV-IND 155
Query: 140 PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE- 198
P G G +I KLR+ QEL+L IA+KGI K+HAKW P + V F Y+P ++
Sbjct: 156 PEGM-------GCLIAKLRKDQELKLTCIAKKGIAKEHAKWMPTSAVGFEYDPHNKLHHL 208
Query: 199 DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVE 258
DL + + ++ W +S + D D E + YD
Sbjct: 209 DLWYENNTDPQKEWPKSKYAEWEDPP--------QDGEPFNYD----------------- 243
Query: 259 IYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
A D F F VE++G+++ Q+V I L+QK+ A+
Sbjct: 244 --AVPDRFYFEVETSGSMEPDQIVQGGIRALQQKIGAL 279
>gi|83769667|dbj|BAE59802.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869849|gb|EIT79042.1| RNA polymerase [Aspergillus oryzae 3.042]
Length = 342
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 158/312 (50%), Gaps = 47/312 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L D + AN+LRR M+AEVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLGLIPL S+ + ++RDC+ D C CSV L A+C D + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128
Query: 129 DHSV-----VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
PV DP G G +I KLRRGQEL++ IA+KGI K+HAKW P
Sbjct: 129 GERANEWVGNPV-ITDPEG-------NGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPT 180
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDD 242
A V F Y+P H N L+ W E P K + + N + + + YD
Sbjct: 181 AAVGFEYDP--HNN--------LKHVDYWYEEDPIKEWPVSHNAAWEHAAPPDQPFDYD- 229
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
A+ ++F VES G ++ ++ I VL++KL +V +
Sbjct: 230 ------------------AQPNNFYIDVESVGVLEPDMIIQQGITVLQRKLASVISALSG 271
Query: 303 VEADDQFGELGA 314
D G +G
Sbjct: 272 TGDGDHNGVMGG 283
>gi|238496743|ref|XP_002379607.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
gi|317146984|ref|XP_001821804.2| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus oryzae
RIB40]
gi|220694487|gb|EED50831.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
Length = 338
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 158/312 (50%), Gaps = 47/312 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L D + AN+LRR M+AEVPTIAIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLGLIPL S+ + ++RDC+ D C CSV L A+C D + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128
Query: 129 DHSV-----VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
PV DP G G +I KLRRGQEL++ IA+KGI K+HAKW P
Sbjct: 129 GERANEWVGNPV-ITDPEG-------NGPLICKLRRGQELKMTCIAKKGIAKEHAKWMPT 180
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDD 242
A V F Y+P H N L+ W E P K + + N + + + YD
Sbjct: 181 AAVGFEYDP--HNN--------LKHVDYWYEEDPIKEWPVSHNAAWEHAAPPDQPFDYD- 229
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
A+ ++F VES G ++ ++ I VL++KL +V +
Sbjct: 230 ------------------AQPNNFYIDVESVGVLEPDMIIQQGITVLQRKLASVISALSG 271
Query: 303 VEADDQFGELGA 314
D G +G
Sbjct: 272 TGDGDHNGVMGG 283
>gi|452821367|gb|EME28398.1| DNA-directed RNA polymerase II subunit C [Galdieria sulphuraria]
Length = 257
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 143/236 (60%), Gaps = 16/236 (6%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+ + P + I + F + DTD S+ANA+RRV IA+VPT+AIDL+ ++VN+S L+DE
Sbjct: 3 FAKTPTIHINRQTFNEMDFIITDTDTSVANAIRRVAIAQVPTMAIDLIHMQVNTSSLHDE 62
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL 125
+AHRLGLIPLTS R ++RDC C C CSV F L +C +++ + VTS+DL
Sbjct: 63 LLAHRLGLIPLTSHRVDEFEYTRDCPYC--SDHCLHCSVTFELDVQC-TEEAMTVTSQDL 119
Query: 126 YS-SDH------SVVPVDFVDPAGYDST----DQQRGIIIVKLRRGQELRLRAIARKGIG 174
+ S H SV PV F Y+ T + GI++ KL +GQ ++L AIA+KG+G
Sbjct: 120 VNKSAHESQLAASVQPVHF--SGEYNPTLSEENGLNGIVLAKLAKGQRIQLTAIAKKGVG 177
Query: 175 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
K+HAKWSP T+++ +P + N + + +L EE + + S + IDP + Q+
Sbjct: 178 KEHAKWSPVCTISYQTDPSVQFNLNKLNTLLSEEAKRALVKSSDECLAIDPKSNQL 233
>gi|72387431|ref|XP_844140.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma brucei
TREU927]
gi|62360648|gb|AAX81059.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei]
gi|70800672|gb|AAZ10581.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327301|emb|CBH10277.1| DNA-directed RNA polymerase II subunit 3,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 168/294 (57%), Gaps = 24/294 (8%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+L + D S AN LRRV++AEVP + ++ V I N+SVL DE IAHR+GL+PL S+RA
Sbjct: 21 FKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLYSKRAKQ 80
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVTSKDLYSSDHSVVPVDFVDPAG 142
M+F DC C G G C C + L+ +C S+Q +L V + L D V PV
Sbjct: 81 MQFFHDC-LCGGTG-CIECQITGELKVRCPSNQHSLQVFADSLKIDDEGVYPV------- 131
Query: 143 YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLME 202
+ ++RG+ ++ L R QE+ LR + RK I K HAK+ P +TV+ YEPE+ +N+D++
Sbjct: 132 ---SSEERGVWLLTLGRSQEINLRVLIRKSIAKTHAKFMPVSTVSMRYEPEVILNKDVIS 188
Query: 203 SLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM---GKPGLVEI 259
SL E+ + W+ S + I + G+ + + +E + K ++ +P LV
Sbjct: 189 SLDPEQLRQWMRSCVHRPHSIAESNGEGHTGHIDVNKLCEECLLKEPSVVSFTEP-LVFA 247
Query: 260 YAKEDS-----FIFTVESTGAIKASQLVLNAIEVLKQKLDAVR--LSEDTVEAD 306
K+D+ F FTVE+TG + QL+ +A++VL++KL V L+E V D
Sbjct: 248 RPKKDARGHYNFTFTVETTGVLPVLQLIRDAVDVLRRKLQRVHECLTERVVPGD 301
>gi|388854978|emb|CCF51481.1| related to RPB3-DNA-directed RNA polymerase II chain [Ustilago
hordei]
Length = 346
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 162/301 (53%), Gaps = 50/301 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK+ +R+L D+A F L + D S AN+LRR+MIA++PT+AID+VEI N++VL DEF+AH
Sbjct: 12 PKITVRQLNRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEFLAH 71
Query: 70 RLGLIPLTS-ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG++PL S + + ++ RDC DG C+ CSVE LRA+C + L+VTS+DL S
Sbjct: 72 RLGMVPLLSMDCSKALVDHRDCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 129 D--------------HSVVP--VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKG 172
D P DF P G+D + I++VK+ +GQEL +R IARKG
Sbjct: 129 DTIENATIYDDDAMNEPAAPKHPDFGRPVGHDGSIPP--IMLVKMSKGQELDIRCIARKG 186
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
K+HAKWSP + V F Y+P + + KQ W E P + P G
Sbjct: 187 FAKEHAKWSPCSAVGFEYDPHNALRHTTY-WYEFDAKQEWPE-GPNAELEEPPQEGA--- 241
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ Y+ +V D F F VE++G++ +++V + +L+ +
Sbjct: 242 ----PFDYNKKV-------------------DKFYFDVEASGSMHPAEIVETGLGLLEYR 278
Query: 293 L 293
+
Sbjct: 279 V 279
>gi|363752075|ref|XP_003646254.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889889|gb|AET39437.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
Length = 311
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 162/298 (54%), Gaps = 36/298 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D S+AN+LRR+MIAE+PT+AID VEIE N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIETNTSVLADEFISH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL-YSS 128
RLGLIPL S+ + + RDC D C+ CSV L+A S+ T +V +KDL S
Sbjct: 66 RLGLIPLQSKDIDQLVYCRDCYCED---HCDRCSVVLTLQAVGESESTTNVYAKDLQIVS 122
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
D + + P D + GI++ KLR+GQELRL+ +A+KGI K+HAKWSPAA + F
Sbjct: 123 D--LGGKNIGHPIIQDK--EANGILVCKLRKGQELRLKCVAKKGISKEHAKWSPAAAIEF 178
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y+P L+ W E T + N + E DD+V +
Sbjct: 179 EYDP----------WNKLKHTDYWFEQDATSEWPHSKN------CEFEDPLNDDDVFDYS 222
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
AK + F VES G+I + Q+V+ I+ L+ K+ + S ++ D
Sbjct: 223 ------------AKPNIFYINVESVGSITSDQVVIRGIKTLQDKVADILFSLKKMDQD 268
>gi|398411480|ref|XP_003857078.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
gi|339476963|gb|EGP92054.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
Length = 361
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 155/301 (51%), Gaps = 44/301 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PKV IRE KF L +T + AN++RR M+AE+PTIAIDLVE+E N+SVL DEF+AH
Sbjct: 17 PKVTIRETNKTTIKFALSNTSLAFANSIRRTMLAEIPTIAIDLVEVEANTSVLADEFLAH 76
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR-AKCHSDQTLDVTSKDLYSS 128
RLGLIPL+++ M RDCD C D C+ CSV L A SDQ L V ++DL+
Sbjct: 77 RLGLIPLSTKGVEEMVDWRDCDQC--DEHCDQCSVILRLNVANRSSDQNLKVFARDLFVE 134
Query: 129 DHSVVPVDFVDPAGYDSTDQ-------------QRGIIIVKLRRGQELRLRAIARKGIGK 175
+ + + G +S+D+ +G +I +LRRGQE++L+ IARKGI K
Sbjct: 135 SGANAGYNRSNGMG-NSSDELPERGRPIVMDRDNQGPLICQLRRGQEIKLKCIARKGIAK 193
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA 235
+HAKW+P A + F Y+P + + + K W ++ +P G+ + A
Sbjct: 194 EHAKWAPTAAIGFEYDPWNKLRHTTL-WYETDAKAEWPRPEKNGGWEEEPQEGEPFNYAA 252
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
E +F +E TG + Q++ + I VL+ KL
Sbjct: 253 EP--------------------------SAFYIELEGTGVMPPDQILHSGIRVLQNKLAG 286
Query: 296 V 296
+
Sbjct: 287 I 287
>gi|268566109|ref|XP_002639637.1| C. briggsae CBR-RPB-3 protein [Caenorhabditis briggsae]
Length = 280
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 164/306 (53%), Gaps = 52/306 (16%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P +++ EL +D KF L DTD S+AN+LRRV +AEVPTIAID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIP S+ + M+++R C+ C+ CS+ F L+ KC + TL VT+ D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTR----CECAEFCDECSIPFILQTKCTDEATLAVTTAD 118
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRG-----------IIIVKLRRGQELRLRAIARKGI 173
L V PA ++ ++RG I+IVKLR+GQEL L+A A+KG
Sbjct: 119 LRPLGVETT----VRPACGEAL-RERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGF 173
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
GK+HAKW+P V F Y+P+ + I PN
Sbjct: 174 GKEHAKWNPTCGVAFEYDPDNALRH-----------------------TIYPNV------ 204
Query: 234 DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
E + D ++ K + AK + F F++E TGA+ ++V I +LK+KL
Sbjct: 205 --EEWPKSDHSSLPEDSAEKEAPFDQNAKPNKFWFSIEGTGALPVQRIVTMGIGILKRKL 262
Query: 294 DAVRLS 299
+ + ++
Sbjct: 263 EELNMA 268
>gi|346323448|gb|EGX93046.1| RNA polymerase II subunit 3 [Cordyceps militaris CM01]
Length = 364
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 163/297 (54%), Gaps = 46/297 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K +++ +F L T + AN+LRRV+ AEVPT+AI+LVEIEVN+SVL DEFIAHR
Sbjct: 27 KARVKAADSTKVEFVLAKTSLAFANSLRRVIQAEVPTVAIELVEIEVNTSVLADEFIAHR 86
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL-YSSD 129
LGLIPL S+ + +SRDCD D CE CS+ L AKC +D+ + V ++DL
Sbjct: 87 LGLIPLDSKDVDELNYSRDCDC---DHYCEQCSITLTLHAKCTTDENMKVYARDLIVDGR 143
Query: 130 HSV---VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
H+ PV DP G G ++ KLRR QELRL+ +A+KGI K+HAKW P + V
Sbjct: 144 HATSIGTPV-INDPDGV-------GCLLAKLRRDQELRLKCVAKKGIAKEHAKWMPTSAV 195
Query: 187 TFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDP-NTGQVYVVDAEAYTYDDEV 244
F Y+P ++ D+ + + + W +S K +P N G E + YD
Sbjct: 196 GFEYDPHNKLHHLDMWFENNTDPDKEWPKS---KYAGWEPENKG-------EPFNYD--- 242
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 301
A ++F F VE++G+++ Q+V + I VL+QK+ + S D
Sbjct: 243 ----------------AVPENFFFDVETSGSMEPDQIVQSGIRVLQQKIGGLLKSLD 283
>gi|367000601|ref|XP_003685036.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
gi|357523333|emb|CCE62602.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
Length = 310
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 164/298 (55%), Gaps = 36/298 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F + + D +MANA RRVMIAE+PT+AID VE+ N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFIVSNVDLAMANAFRRVMIAEIPTLAIDSVEVISNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-SS 128
RLGL+PL S + +SRDC D C+ CSV L+A S+ T +V SKDL S
Sbjct: 66 RLGLVPLQSADIEQLEYSRDCFCED---HCDKCSVVLTLQALGESESTTNVYSKDLVIVS 122
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
D ++ + P D + G++I KLR+GQEL+ IA+KGI K+HAKW PAA + F
Sbjct: 123 D--LLGRNIGHPIIQDK--EGNGVLICKLRKGQELKFTCIAKKGIAKEHAKWGPAAAIEF 178
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y+P L+ + W E K + N Y+D + +
Sbjct: 179 EYDP----------WNKLKHTEYWYEQDAAKEWPQSKNC-----------EYEDPPNEGS 217
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
E + AK D+F VE+ G + + Q+++ I++L++K+ ++ L+ + ++ D
Sbjct: 218 E-------FDYKAKADTFYMNVETIGTVTSDQVIVRGIDILQKKVASILLALNRLDQD 268
>gi|171689616|ref|XP_001909748.1| hypothetical protein [Podospora anserina S mat+]
gi|170944770|emb|CAP70881.1| unnamed protein product [Podospora anserina S mat+]
Length = 334
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 156/291 (53%), Gaps = 48/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P VKI + KFEL++ D S AN+LRRVM+AE+PTIAIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL +E + +SRDCD + CE CSV+ L AKC + + V+++DL
Sbjct: 76 RLGLIPLNAEGVEHLLYSRDCDC---EEYCENCSVKLTLHAKCTGYENMSVSARDL---- 128
Query: 130 HSVVPV------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
VPV P D G +I+KLR QE++L IA+KGI K+HAKW+P+
Sbjct: 129 ---VPVGERINQSLGTPVINDK--DGTGPLILKLRPEQEIKLECIAKKGIAKEHAKWAPS 183
Query: 184 ATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
A + F Y+P + DL + K W S K ++ P V+ E + +D
Sbjct: 184 AAIGFEYDPHNKLRHLDLW--YEKDPKSEWPPSEYAK-WEEPP-------VEGEPFDFD- 232
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A + F + VE+ G + +V I+V++QKL
Sbjct: 233 ------------------AVPNHFYYNVETAGNLPPDGIVTEGIKVIQQKL 265
>gi|84999910|ref|XP_954676.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305671|emb|CAI73996.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
Length = 354
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/347 (34%), Positives = 179/347 (51%), Gaps = 35/347 (10%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MD A Q P +++ +L+ D F L ++D S ANA+RRV+++E+P++AI++V + N+S
Sbjct: 1 MDWAPRQIKPSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL+DE+I+HRLGL+P+ S A F C D +C C+V++ L C+ + V
Sbjct: 61 VLHDEYISHRLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCNDSNSRLV 117
Query: 121 TSKDLYSSD-HS--------VVPVDFVDPAGYD-STDQQRGIIIVKLRRGQELRLRAIAR 170
T D+ D HS +P+ D ++ +TD GI IVKL+RGQ + ++ A
Sbjct: 118 THFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATD---GIPIVKLKRGQSINMKLTAS 174
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI------D 224
KG+GK HAKW A V + EP N LME LS +EK S P VF +
Sbjct: 175 KGLGKFHAKWI-VANVNYKMEPRFSFNSALMEQLSSDEKAGIAASCPRNVFKYTGVRSEN 233
Query: 225 P------------NTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVES 272
P + G + VV+ Y DE I +G L+ I E F FT+ES
Sbjct: 234 PSFLGHSDKTFKLDAGGLQVVNKLDCIYCDECINYCRELGHKDLIRIQPDESKFHFTIES 293
Query: 273 TGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG 319
TG+I +++ A+ VL++KL ++ + ++ AH R G
Sbjct: 294 TGSIPPEKILEIALIVLEKKLQDLQSNFTEAQSRTLGSTTTAHHREG 340
>gi|119481479|ref|XP_001260768.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
gi|119408922|gb|EAW18871.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
Length = 336
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 154/294 (52%), Gaps = 47/294 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L D + AN+LRRV++AEVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLGLIPL S+ + ++RDC+ D C CSV L A+C D+ + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDEIMPVYARDLVVS 128
Query: 129 DHSVV-----PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
PV DP G +G +I KLRRGQEL++ +A+KGI K+HAKW+P
Sbjct: 129 GERANEWVGDPV-ITDPEG-------KGPLICKLRRGQELKMTCVAKKGIAKEHAKWAPT 180
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDD 242
A V F Y+P H N L W E P K + + N + + + YD
Sbjct: 181 AAVGFEYDP--HNN--------LRHVDYWYEEDPIKEWPVSANAAWEHAAPPDQPFDYD- 229
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
A+ ++F VES G + ++ I VL++KL V
Sbjct: 230 ------------------AQPNNFYIDVESIGNLDPDMIIQQGIIVLQRKLATV 265
>gi|154340820|ref|XP_001566363.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063686|emb|CAM39871.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 337
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 154/284 (54%), Gaps = 19/284 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+L + D+S ANALRRVM+AE+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A
Sbjct: 21 FQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKAKR 80
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
+ F +DC C G G C C + L+ +C +Q SK ++ D + +D + Y
Sbjct: 81 LNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDS--LQIDSAE--VY 130
Query: 144 DSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMES 203
+ ++ GI +V L R Q L L + RK I K HAK+ P ATV Y EI +N + ++
Sbjct: 131 PVSAEEHGIWLVTLGRSQVLDLNVLIRKNIAKTHAKFMPVATVAMRYAAEILLNPNGFQA 190
Query: 204 LSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKE 263
L + WV P VF TGQV V D A + E + K ++ ++
Sbjct: 191 LGKTNAREWVARCPRNVFRFVERTGQVEVQDEGACIFCRECTSQEPPFDKLPEPLVFVRQ 250
Query: 264 DS-------FIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
F F VESTG + Q+V +A+ VL++KL R+SE
Sbjct: 251 RKSKMGYFDFTFVVESTGVLPVLQIVYDAVAVLRKKLQ--RVSE 292
>gi|71018933|ref|XP_759697.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
gi|46099249|gb|EAK84482.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
Length = 329
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 52/326 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK+ +R+L D+A F L + D S AN+LRR+MIA++PT+AID+VEI N++VL DE +AH
Sbjct: 12 PKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAH 71
Query: 70 RLGLIPLTS-ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG++PL S + A ++ RDC DG C+ CSVE LRA+C + L+VTS+DL S
Sbjct: 72 RLGMVPLLSMDCAKALVDHRDCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 129 D--------------HSVVP--VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKG 172
D P DF P G+D + I++VK+ +GQEL +R IARKG
Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAP--IMLVKMSKGQELDIRCIARKG 186
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
K+HAKWSP + V F Y+P + + KQ W E P + P G +
Sbjct: 187 FAKEHAKWSPCSAVGFEYDPHNALRHTTY-WYEFDAKQEWPE-GPNAECEEPPQEGAPF- 243
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ K F F VE++G++ +++V + +L+ +
Sbjct: 244 -------------------------DYNKKASKFYFDVEASGSMHPAEIVETGLGLLEYR 278
Query: 293 LDAVRLSEDTVEADDQFGELGAHMRG 318
+ ++ ++ DDQ G G G
Sbjct: 279 V--AQIVQELSMLDDQPGAGGVGPMG 302
>gi|119190113|ref|XP_001245663.1| hypothetical protein CIMG_05104 [Coccidioides immitis RS]
gi|392868567|gb|EAS34367.2| RNA polymerase II subunit 3 [Coccidioides immitis RS]
Length = 345
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 153/291 (52%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+LRRVM+ EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ + M ++R+CD +G C C + L AKC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCVITLQLHAKCTGEGVMVVYARDLVVV 129
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV DPAG +G II KLRRGQE+++ +KGI K+HAKWSP
Sbjct: 130 GDRANEWVGNPV-INDPAG-------KGPIICKLRRGQEVKMTCTVKKGIAKEHAKWSPT 181
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE-AYTYDD 242
A V F Y+P H N L+ W E P K + I N V + + YD
Sbjct: 182 AAVGFEYDP--HNN--------LKHVDYWYEEDPIKEWPISANAEWENPVPPDMPFDYD- 230
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A +F VES G+++ +V I VL++KL
Sbjct: 231 ------------------ATPSTFYLDVESVGSLEPDAIVQQGISVLQRKL 263
>gi|303322553|ref|XP_003071268.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110970|gb|EER29123.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 345
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 153/291 (52%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+LRRVM+ EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ + M ++R+CD +G C C + L AKC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCLITLQLHAKCTGEGVMVVYARDLVVV 129
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV DPAG +G II KLRRGQE+++ +KGI K+HAKWSP
Sbjct: 130 GDRANEWVGNPV-INDPAG-------KGPIICKLRRGQEVKMTCTVKKGIAKEHAKWSPT 181
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE-AYTYDD 242
A V F Y+P H N L+ W E P K + I N V + + YD
Sbjct: 182 AAVGFEYDP--HNN--------LKHVDYWYEEDPIKEWPISANAEWENPVPPDMPFDYD- 230
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A +F VES G+++ +V I VL++KL
Sbjct: 231 ------------------ATPSTFYLDVESVGSLEPDAIVQQGISVLQRKL 263
>gi|403217190|emb|CCK71685.1| hypothetical protein KNAG_0H02700 [Kazachstania naganishii CBS
8797]
Length = 326
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 164/290 (56%), Gaps = 34/290 (11%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + + +MAN+LRRVM+AE+PT+AID V++E N++VL DEFIAH
Sbjct: 6 PQVKIREANRDNVDFILSNVELAMANSLRRVMVAEIPTLAIDSVQVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + + RDC D C+ CSV L+A S+ T +V +KDL +
Sbjct: 66 RLGLIPLQSMDIERLEYCRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDL-TIV 121
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+++ + P D + G++I KLR+GQEL++ IA+KGI K+HAKW P + + F
Sbjct: 122 SNLMGRNIGHPIIQDK--ENNGVLICKLRKGQELKMTCIAKKGIAKEHAKWGPTSAIEFE 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E + + PN+ E Y+D ++
Sbjct: 180 YDP----------WNKLKHTSYWYEVDAAQEW---PNS--------ENCEYEDPPVE--- 215
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
G+P + +K ++F VE+ G+I Q+V+ I+ L++K+ ++ LS
Sbjct: 216 --GEP--FDYKSKAETFYMNVETIGSISVDQVVVRGIDTLQKKVASILLS 261
>gi|320033013|gb|EFW14963.1| DNA-directed RNA polymerase 2 subunit RPB3 [Coccidioides posadasii
str. Silveira]
Length = 345
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 153/291 (52%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+LRRVM+ EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ + M ++R+CD +G C C + L AKC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCVITLQLHAKCTGEGVMVVYARDLVVV 129
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV DPAG +G II KLRRGQE+++ +KGI K+HAKWSP
Sbjct: 130 GDRANEWVGNPV-INDPAG-------KGPIICKLRRGQEVKMTCTVKKGIAKEHAKWSPT 181
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE-AYTYDD 242
A V F Y+P H N L+ W E P K + I N V + + YD
Sbjct: 182 AAVGFEYDP--HNN--------LKHVDYWYEEDPIKEWPISANAEWENPVPPDMPFDYD- 230
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A +F VES G+++ +V I VL++KL
Sbjct: 231 ------------------ATPSTFYLDVESVGSLEPDAIVQQGISVLQRKL 263
>gi|427778887|gb|JAA54895.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 250
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 151/291 (51%), Gaps = 65/291 (22%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I EL D+ KF + DTD S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAETPTLAIDWVQLEANSTVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + M++SRDC D D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCADF---------------------------XD 95
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L SSD VVPV + + I+IVKLR+GQE++ RA A+KG GK+HAKW+P
Sbjct: 96 LKSSDPRVVPVTSRHKDDTNEYGETEDILIVKLRKGQEVKARAYAKKGFGKEHAKWNPTC 155
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P ++ + + W +S YT DE
Sbjct: 156 GVAFEYDP-----DNAFRHTTYPRPEEWPKSE---------------------YTELDED 189
Query: 245 IKKAE--AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+AE + GKP + F + VES+GA+K +VL+ + VLK+KL
Sbjct: 190 HAEAEFQSEGKP---------NKFYYNVESSGALKPENIVLSGLSVLKKKL 231
>gi|320583437|gb|EFW97650.1| DNA-directed RNA polymerase II subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 311
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 159/275 (57%), Gaps = 30/275 (10%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V IR+ D F L D D S+AN+LRR M+AEVPT+AIDLVEI VN+SVL DEF++H
Sbjct: 5 PQVTIRKAGRDEVDFILGDVDLSLANSLRRTMLAEVPTLAIDLVEILVNTSVLADEFLSH 64
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+PL SE ++++RDC D CE CSV LRA C SD+T++V YSS
Sbjct: 65 RLGLVPLESEDIDQLKYTRDCTCED---HCEKCSVTLELRAHCDSDETMNV-----YSSH 116
Query: 130 HSVVP----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
++V ++ P D +++G+++ KL++ Q+L +R +A+KGI K+HAKWSP A
Sbjct: 117 LTIVSPNTGLNLGTPVVRDP--ERKGVLLCKLKKHQQLHVRCVAKKGIAKEHAKWSPCAA 174
Query: 186 VTFMYEPE---IHINEDLMESLSLEEKQS----WVESS-PTKVFDIDPNTGQVYV-VDAE 236
+ F Y+P H + ES+ E +S W E P + FD + + YV ++
Sbjct: 175 IGFEYDPWNKLKHTDYWFEESVEEEWPKSANCEWEEPPVPGERFDYNAKPNRFYVNLETT 234
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
+EV K G +E+ K + +F ++
Sbjct: 235 GPLKPNEVFSK-------GCIELQKKIANIVFELD 262
>gi|212533885|ref|XP_002147099.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072463|gb|EEA26552.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 352
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 156/295 (52%), Gaps = 48/295 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L + D ++ANALRR MIAEVPT+AID+VE+EVN+SVL DEF+AH
Sbjct: 12 PQVTVRETEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVTSKDLY- 126
RLGLIPL S+ M ++RDC C + C CSV L A+C+ +D + V S+DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDC-TC--ESWCSRCSVRLTLHARCNQADDVMKVYSRDLVV 128
Query: 127 ----SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
+++ PV DP G +G +I KL +GQEL+L IARKGI K+HAKWSP
Sbjct: 129 TGDRANEWVGNPV-ITDPEG-------KGPLIAKLIKGQELKLTCIARKGIAKEHAKWSP 180
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ V F Y+P H N L W E P K + I N
Sbjct: 181 TSAVGFEYDP--HNN--------LRHLDYWYEEDPAKEWPISEN---------------- 214
Query: 243 EVIKKAEAMGKPGLVEIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
K E P Y A+ ++F VES G ++ +V I L+ KL +
Sbjct: 215 ---GKWETPNPPDQPFDYDAQPNTFYVDVESIGNLEPDTIVQQGILTLQTKLATI 266
>gi|45187753|ref|NP_983976.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|44982514|gb|AAS51800.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|374107190|gb|AEY96098.1| FADL120Cp [Ashbya gossypii FDAG1]
Length = 311
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 159/305 (52%), Gaps = 50/305 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D S+AN+LRR+MIAE+PT+AID VEIE N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY--- 126
RLGL+PL S+ + + RDC D C+ CSV L A S+ T +V +KDL
Sbjct: 66 RLGLVPLQSKDIDQLVYCRDCFCED---HCDRCSVLLTLHAVGESESTTNVYAKDLQIVS 122
Query: 127 -----SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+ H ++ + G++I KLR+GQELRL+ +A+KGI K+HAKWS
Sbjct: 123 DLGGKNIGHPII-----------QDKEANGVLICKLRKGQELRLKCVAKKGIAKEHAKWS 171
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
PAA + F Y+P L W E P + P++ D D
Sbjct: 172 PAAAIEFEYDP----------WNKLRHTDYWHEQDPEAEW---PHSKNCEFEDPP--NED 216
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 301
D+ + AK ++F VES G+I + Q+V+ I+ L+ K+ + S
Sbjct: 217 DQ-------------FDYSAKPNTFYMNVESVGSIPSDQVVIRGIKTLQDKVADILFSLK 263
Query: 302 TVEAD 306
++ D
Sbjct: 264 KMDQD 268
>gi|115384192|ref|XP_001208643.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196335|gb|EAU38035.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 331
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 154/294 (52%), Gaps = 56/294 (19%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L D + AN+LRR M+AEVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 13 PQVTVREAEPYRVDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL--- 125
RLGLIPL S+ + ++RDC+ D C CSV L A+C D + V ++DL
Sbjct: 73 RLGLIPLNSKNCDQDLEYTRDCECED---HCARCSVTLQLHARCTGDDIMRVYARDLAVA 129
Query: 126 --YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
++D PV DP G +G +I KLRRGQEL++ IA+KGI K+HAKW+P
Sbjct: 130 GERANDWVGTPV-ITDPEG-------KGPLICKLRRGQELKMTCIAKKGIAKEHAKWAPT 181
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPT-KVFDIDPNTGQVYVVDAEAYTYDD 242
A + F Y+P H N ++ + + +W ++P + FD D
Sbjct: 182 AAIGFEYDP--HNNLRHVDYWPVSQNAAWEHAAPPDQPFDYD------------------ 221
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
A+ +F VES G + ++ I VL++KL +V
Sbjct: 222 ------------------AQPANFYLDVESIGNLDPDMIIQQGIIVLQRKLASV 257
>gi|406606315|emb|CCH42306.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 321
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 160/304 (52%), Gaps = 48/304 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P + IR+ D F L + D S+AN++RRVMI+E+PT+AID VEIE N+SVL DEFIAH
Sbjct: 4 PSINIRKTASDEVDFVLSNVDLSLANSIRRVMISEIPTLAIDSVEIETNTSVLADEFIAH 63
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY--- 126
RLGLIPL S + +SRDC C D C CSVE L+ + D TL+V SKDL+
Sbjct: 64 RLGLIPLQSLDVDKLSYSRDC-TC--DDYCNKCSVELELKVRADQDSTLNVYSKDLFIVS 120
Query: 127 -SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
++ ++ DP ++ G++I KLR QEL +R IA+KGI K+HAKWSP A
Sbjct: 121 QNTHLNIGSAIITDP-------EENGVLICKLRNEQELFIRCIAKKGIAKEHAKWSPCAA 173
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
+ F Y+P L+ W E DID + +E Y+D
Sbjct: 174 IGFEYDP----------WNKLKHTDYWYEE------DIDEEWPR-----SENCEYED--- 209
Query: 246 KKAEAMGKPGLVEIY---AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
P E + A+ + + VE+ G++ Q+VL + L+ K+ + ++ D
Sbjct: 210 -------PPNPEEPFDYKAEPNKYYINVETVGSLPPDQVVLRGLNELQSKVAGIVMALDK 262
Query: 303 VEAD 306
+ +
Sbjct: 263 SDGN 266
>gi|67540164|ref|XP_663856.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|40739446|gb|EAA58636.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|259479538|tpe|CBF69852.1| TPA: RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090)
[Aspergillus nidulans FGSC A4]
Length = 333
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 156/293 (53%), Gaps = 47/293 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L D + AN+LRRVM+AE+PT+AID+VE+E NSSVL DE +AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ + ++RDC+ D C CSV L A+C SD+ + V ++DL
Sbjct: 72 RLGLIPLDSKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTSDEIMRVYARDLVIT 128
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV DP G G +I KLRRGQEL++ IA+KGI K+H+KW+P
Sbjct: 129 GERANEWVGNPV-ITDPDG-------NGPLICKLRRGQELKMTCIAKKGIAKEHSKWAPT 180
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDD 242
A + F Y+P H N L W E P K + + N A + + YD
Sbjct: 181 AAIGFEYDP--HNN--------LRHVDYWYEEDPVKEWPVSHNAAWEPAAPADQPFDYD- 229
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
A+ ++F VES G ++ ++ I VL++KL A
Sbjct: 230 ------------------AQPNNFYIDVESIGNLEPDMIIQQGITVLQRKLAA 264
>gi|325096255|gb|EGC49565.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 475
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 155/287 (54%), Gaps = 39/287 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+LRR ++AE+PT+AID+VEIE N+SVL DEFI+H
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-S 127
RLGLIPL S+ M +SRDCD +G C C V L+A+C + + V ++DL
Sbjct: 73 RLGLIPLNSKNCDADMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDLVIV 129
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
D + V +P D+ + +G +I KLRRGQE+++ IA+KGI K+HAKW+P A V
Sbjct: 130 GDRANEWVG--NPVIMDA--EGKGPVICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVG 185
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
F Y+P H N L+ W E P K + I N +
Sbjct: 186 FEYDP--HNN--------LKHVDYWYEEDPIKEWPISANA-------------------E 216
Query: 248 AEAMGKPGLVEIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
E +P + Y A+ +F VES G ++ +V I VL++KL
Sbjct: 217 WETSAQPDMPFDYDAQPSTFYIDVESIGNLEPDAIVQQGITVLQRKL 263
>gi|50555259|ref|XP_505038.1| YALI0F05566p [Yarrowia lipolytica]
gi|49650908|emb|CAG77845.1| YALI0F05566p [Yarrowia lipolytica CLIB122]
Length = 314
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 148/276 (53%), Gaps = 56/276 (20%)
Query: 32 SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCD 91
++AN+LRRVM+AE+PT+AIDLVEI N+SVL DEFI+HRLGLIPL S+ + +SRDC
Sbjct: 21 TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDC- 79
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVP----VDFVDPAGYDSTD 147
C D C+ CSV L A C D T+D+ S+DL P + DPA
Sbjct: 80 VC--DEYCDKCSVVLMLDATCTGDDTMDIYSRDLMVHTTPERPELGKPIYTDPA------ 131
Query: 148 QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP-------EIHINEDL 200
++GI+I KLR+ Q LR++ IA+KGI K+HAKWSP A + F Y+P + E+
Sbjct: 132 -KKGILICKLRKNQSLRIKCIAKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDYWYEENA 190
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIY 260
E L + W E P K + E + Y+
Sbjct: 191 EEEWPLSKNADWEE--PPK--------------ENEPFDYN------------------- 215
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
AK + F VE+TGA+ ++VL ++VL++KL V
Sbjct: 216 AKPNKFYINVEATGALTQYEVVLRGMQVLQKKLAEV 251
>gi|453089708|gb|EMF17748.1| insert subdomain of RNA polymerase alpha subunit [Mycosphaerella
populorum SO2202]
Length = 362
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 155/303 (51%), Gaps = 46/303 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK+ IRE D +F L +T ++AN++RRVM+AEVPTIAIDL EIE N+SVL DEF+AH
Sbjct: 16 PKITIRETTDKSIRFRLSNTSLALANSVRRVMLAEVPTIAIDLCEIEANTSVLADEFLAH 75
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDLYSS 128
RLGLIPL+++ M RDC C D C+ CSV L A +SDQ L V ++DL+
Sbjct: 76 RLGLIPLSTKGVDEMVDFRDC-TC--DEYCDNCSVVLRLNAANRNSDQNLKVFARDLFVE 132
Query: 129 DHSVVPVDFVDPAGYDSTDQQ---------------RGIIIVKLRRGQELRLRAIARKGI 173
+ + G + T +G +I +LRRGQELR++ IA+KGI
Sbjct: 133 SGAPGVATYNRSNGVNGTSSDDLPPRGAPIIGDPAGQGPLICQLRRGQELRIKCIAKKGI 192
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
K+HAKW+P A + F Y+P + + + K W E ++ P G+ +
Sbjct: 193 AKEHAKWAPTAAIGFEYDPWNKLKHTTL-WYETDAKAEWPEPQKNGDWEEPPQEGEPF-- 249
Query: 234 DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ A+ +F F +E TG + Q++ + I VL+ KL
Sbjct: 250 ------------------------DYAAEPTNFYFELEGTGVMPPDQILHSGIRVLQAKL 285
Query: 294 DAV 296
+
Sbjct: 286 AGI 288
>gi|225557550|gb|EEH05836.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces capsulatus
G186AR]
Length = 475
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 155/287 (54%), Gaps = 39/287 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+LRR ++AE+PT+AID+VEIE N+SVL DEFI+H
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL-YS 127
RLGLIPL S+ M +SRDCD +G C C V L+A+C + + V ++DL
Sbjct: 73 RLGLIPLNSKNCDADMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDLVVV 129
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
D + V +P D+ + +G +I KLRRGQE+++ IA+KGI K+HAKW+P A V
Sbjct: 130 GDRANEWVG--NPVIMDA--EGKGPVICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVG 185
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
F Y+P H N L+ W E P K + I N +
Sbjct: 186 FEYDP--HNN--------LKHVDYWYEEDPIKEWPISANA-------------------E 216
Query: 248 AEAMGKPGLVEIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
E +P + Y A+ +F VES G ++ +V I VL++KL
Sbjct: 217 WETPAQPDMPFDYDAQPSTFYIDVESIGNLEPDAIVQQGITVLQRKL 263
>gi|226286652|gb|EEH42165.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb18]
Length = 352
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 152/291 (52%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + + F L D + AN+LRR M+AE+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ M +SRDCD +G C C V L +C + + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDLIIV 130
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV D G +G +I KL RGQEL++ IA+KGI K+H+KW+P
Sbjct: 131 GDRANEWVGSPV-ITDAEG-------KGPVICKLSRGQELKMTCIAKKGIAKEHSKWAPT 182
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
A V F Y+P H N L+ W E P K + I PN
Sbjct: 183 AAVGFEYDP--HNN--------LKHVDYWYEEDPAKEWPISPNA---------------- 216
Query: 244 VIKKAEAMGKPGLVEIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ E +P + Y + +F VES G ++ +V I VL++KL
Sbjct: 217 ---EWETAAQPDMPFDYDVQPSTFYIDVESIGNLEPDAIVQQGIMVLQRKL 264
>gi|295662885|ref|XP_002791996.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279648|gb|EEH35214.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 352
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 152/291 (52%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + + F L D + AN+LRR M+AE+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ M +SRDCD +G C C V L +C + + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCIVMLSLNVRCTGEDVMKVYARDLIIV 130
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV D G +G +I KL RGQEL++ IA+KGI K+H+KW+P
Sbjct: 131 GDRANEWVGSPV-ITDAEG-------KGPVICKLSRGQELKMTCIAKKGIAKEHSKWAPT 182
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
A V F Y+P H N L+ W E P K + I PN
Sbjct: 183 AAVGFEYDP--HNN--------LKHVDYWYEEDPAKEWPISPNA---------------- 216
Query: 244 VIKKAEAMGKPGLVEIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ E +P + Y + +F VES G ++ +V I VL++KL
Sbjct: 217 ---EWETAAQPDMPFDYDVQPSTFYIDVESIGNLEPDAIVQQGITVLQRKL 264
>gi|403220422|dbj|BAM38555.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 354
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/321 (34%), Positives = 167/321 (52%), Gaps = 35/321 (10%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MD A Q P ++I +L+ D F L ++D S ANA+RR++++E+P++AI++V + N+S
Sbjct: 1 MDWAPRQIKPSIEIVDLRKDRMDFILLNSDVSTANAIRRIILSEIPSLAIEIVTVLENTS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL+DE+I+HRLGL+P+ S A F C D +C C+V++ L C+ + V
Sbjct: 61 VLHDEYISHRLGLLPIDSTLASEFEFRDKCQCTD---KCARCTVDYTLDVSCNDSDSRVV 117
Query: 121 TSKDLY---SSDHSV------VPVDFVDPAGYD-STDQQRGIIIVKLRRGQELRLRAIAR 170
T D+ S S+ +P+ D ++ TD GI IVKL+RG + ++ A
Sbjct: 118 THFDIVPDESQSQSIYGKNLPMPIPRADATNFNGGTD---GIPIVKLKRGHSINMKLTAT 174
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF-------DI 223
KG+GK HAKW V + EP N +ME L+ EEK S P VF D+
Sbjct: 175 KGLGKFHAKWI-VGNVNYKMEPRFSFNSSIMEQLTSEEKAGIAASCPRGVFKYTGVRSDM 233
Query: 224 DP-----------NTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVES 272
+P N G + V + Y DE I +G L+ I E F FT+ES
Sbjct: 234 EPGLGSSDKSFKLNVGGLQVANKLNCIYCDECINYCRELGHKDLIRIQPDESKFHFTIES 293
Query: 273 TGAIKASQLVLNAIEVLKQKL 293
TG+I +++ A+ L++KL
Sbjct: 294 TGSIPPEKILDIALLCLEKKL 314
>gi|242779067|ref|XP_002479367.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
gi|218722986|gb|EED22404.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 156/295 (52%), Gaps = 48/295 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F+L + D ++ANALRR MIAEVPT+AID+VE+EVN+SV+ DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVTSKDLY- 126
RLGLIPL S+ M ++RDC C + C CSV L A+C+ +D + V S+DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDC-TC--ESWCSRCSVRLTLHARCNQADDVMKVYSRDLVV 128
Query: 127 ----SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
+++ PV DP G +G +I KL +GQEL+L IARKGI K+HAKWSP
Sbjct: 129 TGDRANEWVGNPV-ITDPEG-------KGPLIAKLIKGQELKLTCIARKGIAKEHAKWSP 180
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ V F Y+P H N L+ W E P K + I N
Sbjct: 181 TSAVGFEYDP--HNN--------LKHLDYWYEEDPAKEWPISEN---------------- 214
Query: 243 EVIKKAEAMGKPGLVEIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
K E P Y A+ +F VES G ++ +V I L+ KL +
Sbjct: 215 ---GKWETPNPPDQPFDYDAQPHTFYVDVESIGNLEPDAIVQQGILTLQTKLATI 266
>gi|261199520|ref|XP_002626161.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239594369|gb|EEQ76950.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239615533|gb|EEQ92520.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ER-3]
gi|327354685|gb|EGE83542.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ATCC 18188]
Length = 346
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 155/287 (54%), Gaps = 39/287 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+LRR ++AEVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL-YS 127
RLGLIPL S+ M +SRDCD +G C C V L+A+C + + V ++DL
Sbjct: 73 RLGLIPLNSKNCDADMYYSRDCDC---EGGCARCVVTLSLQARCTGEDIMKVYARDLVVV 129
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
D + V +P D+ + +G +I KLRRGQE+++ +A+KGI K+HAKW+P A V
Sbjct: 130 GDRANEWVG--NPVITDA--EGKGPLICKLRRGQEIKMTCVAKKGIAKEHAKWAPTAAVG 185
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
F Y+P H N L+ W E P K + + N +
Sbjct: 186 FEYDP--HNN--------LKHVDYWYEEDPIKEWPVSANA-------------------E 216
Query: 248 AEAMGKPGLVEIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
E +P + Y A+ +F VES G ++ +V I VL++KL
Sbjct: 217 WETPTQPDMPFDYDAQPSTFYLDVESIGNLEPDAIVQQGITVLQRKL 263
>gi|255714803|ref|XP_002553683.1| KLTH0E04598p [Lachancea thermotolerans]
gi|238935065|emb|CAR23246.1| KLTH0E04598p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 168/304 (55%), Gaps = 39/304 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + + RDC D C+ CSV L+A S+ T +V +KDL
Sbjct: 66 RLGLIPLQSSDINDLIYCRDCYCED---HCDRCSVVLTLQAVGESESTTNVYAKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D G++I KLR+GQEL+L+ +A+KGI K+HAKWSPAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--DGNGVLICKLRKGQELKLKCVAKKGISKEHAKWSPAAAIEFE 179
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y+P ++ + E+ + E W +S + ++ PN + EA+ Y+
Sbjct: 180 YDPWNKLKHTDYWHETDAAAE---WPQSKNCE-YEDPPN-------EDEAFDYN------ 222
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADD 307
AK +F VE+ G++ Q+V+ ++ L+ K+ + S ++ D
Sbjct: 223 -------------AKPTTFYMNVETVGSLTVDQVVIRGMKTLQDKVADILFSLKKMDQDK 269
Query: 308 -QFG 310
FG
Sbjct: 270 VNFG 273
>gi|429328829|gb|AFZ80589.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 355
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 171/326 (52%), Gaps = 36/326 (11%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+ AS P ++I EL+ D F L ++D S ANA+RR++++E+P +AI++V + N+S
Sbjct: 1 MEWASRHIKPSIEIVELRQDRMDFVLLNSDVSTANAIRRIILSEIPALAIEIVTVLENTS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL+DE+I+HRLGL+P+ S A F C D +C C+V++ L C + V
Sbjct: 61 VLHDEYISHRLGLLPIDSTLASEFEFREKCQCSD---KCAKCTVDYTLDVSCDDADSKVV 117
Query: 121 TSKDLYSSDHSV---------VPVDFVDPAGYD-STDQQRGIIIVKLRRGQELRLRAIAR 170
T D+ + + + +P+ D + ++ +TD GI IVKL+RGQ + ++ A
Sbjct: 118 THFDIIADEAEINSNDERKIPMPIPRADISNFNGATD---GIPIVKLKRGQSISMKLTAT 174
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFD-------- 222
KG+GK HAKW A V + EP N LME +S E+K S S P VF
Sbjct: 175 KGLGKFHAKWI-VANVNYKMEPRFLFNSSLMEQISSEDKASIASSCPRNVFKFSGSRMDH 233
Query: 223 -----------IDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
I + G + +++ Y DE I A +G L+ I + F FT+E
Sbjct: 234 TGISLGNSNSAIKLDEGGLQIINKLNCIYCDECINHARELGHRDLIRIEPDDSKFHFTIE 293
Query: 272 STGAIKASQLVLNAIEVLKQKLDAVR 297
STG+I +++ A+ L++K+ ++
Sbjct: 294 STGSIPPEKILEIALSCLEEKMQGLQ 319
>gi|395332694|gb|EJF65072.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens LYAD-421
SS1]
Length = 410
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 156/310 (50%), Gaps = 64/310 (20%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IR+LK + F L + D S AN+ RRVMIA++PT+AID+VEIE N++VL DEFIAH
Sbjct: 8 PIVRIRDLKKNSVNFVLENVDLSFANSFRRVMIADIPTVAIDMVEIETNTTVLPDEFIAH 67
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVTSKDLYS 127
RLG+IPL S +MR++RDC + +C++C++E L CH ++ T+ +TS L
Sbjct: 68 RLGMIPLVSTMCDEAMRYTRDCTC---EVRCQYCAIELQLNVACHEANTTMHITSNML-- 122
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRG------------------------IIIVKLRRGQEL 163
VVP + P Y S D G I+I K+R GQEL
Sbjct: 123 ---EVVPTN--KPGSYGSYDTDDGGEELAKRVENFGHPIGKDDPDVPPILICKIRMGQEL 177
Query: 164 RLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI 223
R+R IA+KGI K+HAKWSP + V F Y+P +
Sbjct: 178 RVRCIAKKGIAKEHAKWSPCSAVAFEYDPHNKLR-------------------------- 211
Query: 224 DPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
+T Y DA A E K+ + + AK F VE+ G++ A ++V
Sbjct: 212 --HTSYWYEYDARAEWPLSENAKEEDPPRDDVPFDYNAKPTKFYMEVETDGSLGAQEVVH 269
Query: 284 NAIEVLKQKL 293
++ L+ KL
Sbjct: 270 KGLQELQTKL 279
>gi|71001920|ref|XP_755641.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|66853279|gb|EAL93603.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|159129698|gb|EDP54812.1| RNA polymerase II subunit 3 [Aspergillus fumigatus A1163]
Length = 392
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 148/280 (52%), Gaps = 47/280 (16%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 82
F+L D + AN+LRRV++AEVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+
Sbjct: 82 FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQ 141
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVV-----PVDF 137
+ ++RDCD D C CSV L A+C D+ + V ++DL S PV
Sbjct: 142 DVEYTRDCDCED---HCARCSVTLTLHARCTGDEIMPVYARDLVVSGERANEWVGDPV-I 197
Query: 138 VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
DP G +G +I KLRRGQEL++ +A+KGI K+HAKW+P A V F Y+P H N
Sbjct: 198 TDPEG-------KGPLICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFEYDP--HNN 248
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDDEVIKKAEAMGKPGL 256
L W E P K + + N + + + YD
Sbjct: 249 --------LRHVDYWYEEDPIKEWPVSANAAWEHAAPPDQPFDYD--------------- 285
Query: 257 VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
A+ ++F VES G ++ ++ I VL++KL V
Sbjct: 286 ----AQPNNFYIDVESIGNLEPDMIIQQGIVVLQRKLATV 321
>gi|170092317|ref|XP_001877380.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647239|gb|EDR11483.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 304
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 51/299 (17%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IRELK D F L + D + AN+LRRVM+A++PT+AID+VEIE+N++VL DEFIAH
Sbjct: 9 PTVRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAH 68
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG++PL S ++R +RDC G C FC++ L CH D T++VTS L
Sbjct: 69 RLGMVPLLSSNCDEAIRSTRDCTCLAG---CSFCAIMLVLNVGCHDDTTMEVTSAHL--- 122
Query: 129 DHSVVPVDFVDPAGYDSTDQQRG----------------IIIVKLRRGQELRLRAIARKG 172
D P + +D + +RG I+I K+R+GQEL+++ +A+KG
Sbjct: 123 DVIPYPEENLDTSDSGEELSKRGEYFGHPVGKNEPGVAPILICKIRKGQELKVKCVAKKG 182
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
I K+HAKWSP + V+F Y+P L W E+ + + N +
Sbjct: 183 IAKEHAKWSPCSAVSFEYDP----------YNKLRHTTYWFETDERGEWPMSDNGKE--- 229
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
E DDE + AK + F F VE+ G++ ++V+ + L++
Sbjct: 230 ---EEPPRDDEPF------------DFNAKPNKFYFEVETDGSLGPQEVVMKVLHKLRR 273
>gi|225684781|gb|EEH23065.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb03]
Length = 283
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 152/291 (52%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + + F L D + AN+LRR M+AE+PT+AID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ M +SRDCD +G C C V L +C + + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDLIIV 130
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV D G +G +I KL RGQEL++ IA+KGI K+H+KW+P
Sbjct: 131 GDRANEWVGSPV-ITDAEG-------KGPVICKLSRGQELKMTCIAKKGIAKEHSKWAPT 182
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
A V F Y+P H N L+ W E P K + I PN
Sbjct: 183 AAVGFEYDP--HNN--------LKHVDYWYEEDPAKEWPISPNA---------------- 216
Query: 244 VIKKAEAMGKPGLVEIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ E +P + Y + +F VES G ++ +V I VL++KL
Sbjct: 217 ---EWETAAQPDMPFDYDVQPSTFYIDVESIGNLEPDAIVQQGIMVLQRKL 264
>gi|441597761|ref|XP_004093284.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB3 [Nomascus leucogenys]
Length = 258
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 160/294 (54%), Gaps = 63/294 (21%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASM-ANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
Y P V+I EL D+ KF + +TD ++ N + ++ + +AID V+I+ NSSVL+D
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLALXVNLMAKLHVCFFHFLAIDWVQIDANSSVLHD 62
Query: 65 EFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
EFIAHRLGLIPL S+ + +++SRDC + C CSVEF L +C+ DQT VTS+
Sbjct: 63 EFIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSR 119
Query: 124 DLYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
DL S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KG GK+HAK
Sbjct: 120 DLISNSPRVIPVTSRNRDNDPNDYV---EQDDILIVKLRKGQELRLRAYAKKGFGKEHAK 176
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
W+P A V F Y+PE L+E +S +P DPN
Sbjct: 177 WNPTAGVAFEYDPEYS---------ELDEDES---QAP-----YDPN------------- 206
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 207 ------------GKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 239
>gi|444324054|ref|XP_004182667.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
gi|387515715|emb|CCH63148.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
Length = 335
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 162/302 (53%), Gaps = 35/302 (11%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P++KIRE D F L + D ++AN+LRRVMIAE+PT+AID VE+E+N++VL DEFI+H
Sbjct: 6 PQIKIREATKDNVDFILSNIDMALANSLRRVMIAEIPTLAIDSVEVEMNTTVLADEFISH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + + RDC D C+ CSV L+A S+ T +V +KDL
Sbjct: 66 RLGLIPLQSADIDQLEYCRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+++ + P D + G++I KLR+GQEL++ +A+KGI K+HAKW A + +
Sbjct: 123 -NLLGRNIGHPIIQDK--EGNGVLICKLRKGQELKMTCVAKKGIAKEHAKWGATAAIEYE 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P L+ W E+ P K + N Y+D +
Sbjct: 180 YDP----------WNKLKHTDYWYENDPLKEWPHSKNC-----------QYEDPPTEGE- 217
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADD-Q 308
L + AK ++F VE+ G+I Q+++ I+ L++K + L+ +E +
Sbjct: 218 ------LFDYKAKANTFYMNVEAVGSITTDQVIIRGIDTLQKKTAGILLALSQMEQEKVN 271
Query: 309 FG 310
FG
Sbjct: 272 FG 273
>gi|409080609|gb|EKM80969.1| hypothetical protein AGABI1DRAFT_112673 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197524|gb|EKV47451.1| hypothetical protein AGABI2DRAFT_192637 [Agaricus bisporus var.
bisporus H97]
Length = 380
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 152/302 (50%), Gaps = 53/302 (17%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IREL D F L + D + AN+ RRVM+A++PT+AID+VEIE+N++VL DEFIAH
Sbjct: 9 PIVRIRELAKDKVNFVLENVDLAFANSFRRVMMADLPTVAIDMVEIEINTTVLPDEFIAH 68
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG IPL S ++R++RDC G C FCS+ +L C+ D T++VTS L
Sbjct: 69 RLGQIPLLSSNCDEAIRYTRDCTCLAG---CPFCSIMLNLHVSCNDDNTMNVTSNHL--- 122
Query: 129 DHSVVPVD-----------------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
D P D F P G + + I+I K+R+GQEL+ + A+K
Sbjct: 123 DIMPFPEDQEQQTDPGEELSKRGEYFGHPVGKNDPNASP-ILICKIRKGQELKAKCTAKK 181
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY 231
GI K+HAKWSP + V F Y+P L W E+ + + N +
Sbjct: 182 GIAKEHAKWSPCSAVAFEYDPHNK----------LRHTSYWFETDIKAEWPLGENAKE-- 229
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
E DDE + AK F F VE+ G++ ++V+ + L+
Sbjct: 230 ----EEPPRDDEPF------------DYNAKPTKFYFEVETDGSLSPQEVVMKGLAELQT 273
Query: 292 KL 293
KL
Sbjct: 274 KL 275
>gi|167517689|ref|XP_001743185.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778284|gb|EDQ91899.1| predicted protein [Monosiga brevicollis MX1]
Length = 276
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 156/294 (53%), Gaps = 42/294 (14%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
++ P++++ E D F L+ D ++AN+ RRVMIAEVPT+AID V I N+SVL
Sbjct: 4 APTFNSSPRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVL 63
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
+DEF+AHRLGLIPLTSE A + RDC C+ C+ C V L + H+++ VT+
Sbjct: 64 HDEFLAHRLGLIPLTSEAADKFYYPRDCTLCEMG--CDHCQVMLTLDVEGHTEEPTHVTT 121
Query: 123 KDLYSSDHSVVPVDF--VDP-AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
DL S DF V P + + ++ + I+I KL +GQ ++L A A+KG GK+HAK
Sbjct: 122 DDLISQAAG----DFMAVKPISAREESNIRNPIVICKLAKGQRIQLTAFAKKGFGKEHAK 177
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
W P A + F Y+P+ + E S+ W P F P +AE Y
Sbjct: 178 WCPTAGIAFEYDPDNALRHTFFEVPSM-----W----PKSEFSTLPEGEH----EAE-YD 223
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
Y GKP ++ TVESTGA+ A ++ +A+E L +KL
Sbjct: 224 YK----------GKPS---------TYFMTVESTGALPAPLILFSALESLHEKL 258
>gi|378732910|gb|EHY59369.1| DNA-directed RNA polymerase II subunit C [Exophiala dermatitidis
NIH/UT8656]
Length = 335
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 156/295 (52%), Gaps = 36/295 (12%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDG PKV +RE++ D F L+ ++AN+LRR ++AE+PTIAIDLV+I NSS
Sbjct: 14 MDGVE-TSGPKVTVREVEQDRCDFVLQSCSLALANSLRRAILAEIPTIAIDLVDIITNSS 72
Query: 61 VLNDEFIAHRLGLIPLTSER-AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD 119
VL DE++AHRL LIPL S+ ++ ++RDCD C D CE+CSV L A+C T+
Sbjct: 73 VLPDEYLAHRLALIPLASKGVGENLNYTRDCDRC--DDHCEYCSVVLRLHARCTRPGTMM 130
Query: 120 VTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
V ++DL +D + P D G +I KLR+GQE+ L IA+KGI K+HAK
Sbjct: 131 VYARDLTVADPRQDGIG--QPVIRDVNGT--GPLIAKLRQGQEIHLECIAKKGIAKEHAK 186
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA-Y 238
W+P A V F Y+P + L+ W E+ + + +D D A
Sbjct: 187 WAPTAAVGFEYDP----------NNKLKHLDYWYETDAKEEWPVDERNATWEGDDTAADA 236
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
++D + + A F F VE G ++ +V IEV+++KL
Sbjct: 237 SFDPDAVPSA-----------------FFFDVEGVGTLEPDDIVRGGIEVIQKKL 274
>gi|50307587|ref|XP_453773.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642907|emb|CAH00869.1| KLLA0D16170p [Kluyveromyces lactis]
Length = 307
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 163/293 (55%), Gaps = 40/293 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D ++AN+LRRVMI+E+PT+AID VEIE N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL-YSS 128
RLGLIPL S + + RDC D C+ CSVE L A S+ T +V +KDL +S
Sbjct: 66 RLGLIPLQSADIDQVVYCRDCYCED---HCDRCSVELILHAIGESESTTNVYAKDLQITS 122
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
D + + P D + G++I KLR+GQE+R++ IA+KGI K+HAKWSP+A + F
Sbjct: 123 D--LKGRNIGHPIIQDR--EANGVLICKLRKGQEIRVKCIAKKGISKEHAKWSPSAAIEF 178
Query: 189 MYEPEIHINEDLMESLSLEE--KQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
Y+P N+ E+ + W +S + F+ PN + E + Y
Sbjct: 179 EYDP---WNKLKHTDYWYEQDARDEWPQSKNCE-FEDPPN-------EDEDFDY------ 221
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
AK ++F VES G+I + Q+V+ I+ L+ K+ + S
Sbjct: 222 -------------RAKPNTFYINVESVGSITSEQVVVRGIKTLQDKVADILFS 261
>gi|209876648|ref|XP_002139766.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Cryptosporidium muris RN66]
gi|209555372|gb|EEA05417.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Cryptosporidium muris RN66]
Length = 351
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 157/296 (53%), Gaps = 20/296 (6%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI EL DY F+L DA++ANALRR+++ EVPT+AI+ V+I NS V+ DE +AHRL
Sbjct: 66 IKINELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRL 125
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHS---DQTLDVTSKDLYSS 128
GLIP + + + D D + + C F L +C+ D +TSK +YS
Sbjct: 126 GLIPFNIDLDLIDFRAEDQDLNEKNSVC------FKLCVECNKYDIDDKNGITSKAIYSK 179
Query: 129 DHSVVPVDFVDPAGYDSTDQQ---RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
D VP+ ++ I+I KLR GQ + KGIGK HAKWSP +T
Sbjct: 180 DLIWVPMSESQKQIFEKKPPSVVYPDILITKLRPGQVIEAILYCEKGIGKTHAKWSPVST 239
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
T+ PE E + ++ + +VE P VFDI+ TG+VYV + T I
Sbjct: 240 ATYRLLPEFKFPEGYITG---KDAKEFVEVCPMNVFDIEDITGKVYVKNPRNCTTCRACI 296
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 301
+K P VEI+ + FIF++ESTG+I QLV AI +L++K + S D
Sbjct: 297 EKF-----PKKVEIFKNKHHFIFSIESTGSISPIQLVKTAINILREKSHKINNSID 347
>gi|452846630|gb|EME48562.1| hypothetical protein DOTSEDRAFT_162154 [Dothistroma septosporum
NZE10]
Length = 364
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 162/314 (51%), Gaps = 44/314 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PKV IR KF L +T + AN++RRVM+AE+PTIAIDLVEIE N+SVL DEF+AH
Sbjct: 17 PKVTIRSADATTIKFNLTNTSLAFANSIRRVMLAEIPTIAIDLVEIENNTSVLADEFLAH 76
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR-AKCHSDQTLDVTSKDLY-- 126
RLGL+PL+++ M RDC C D C+ CSV L A +SDQ L V ++DL+
Sbjct: 77 RLGLVPLSTKGVDDMVDGRDC-TC--DDYCDNCSVVLRLNVANRNSDQNLKVFARDLFVE 133
Query: 127 --------SSDHSVVPVDFVDPAGYD--STDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
+ + D + P G S Q+G ++ +LRRGQEL+L+ +A++GI K+
Sbjct: 134 SQAGYGGRGNGANGSSSDDLPPRGSPILSDPAQQGPLLCQLRRGQELKLKCVAKRGIAKE 193
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAKW+P A + F Y+P + + + K W E ++ P G E
Sbjct: 194 HAKWAPTAAIGFEYDPWNKLRHTTLW-YETDAKAEWPEPEKNGQWEEKPAEG-------E 245
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ Y E K F +E+TG + Q++ ++I VL+ KL +
Sbjct: 246 PFNYQAEPSK-------------------FYIDLEATGVMPPDQILHSSIRVLQAKLAGI 286
Query: 297 RLSEDTVEADDQFG 310
D ADD +G
Sbjct: 287 IRDLD-AGADDNYG 299
>gi|407039476|gb|EKE39676.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 283
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 153/297 (51%), Gaps = 29/297 (9%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+ Y R P + E K++ F + TD SM N LRRV++AE PTIAI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
L DEFIAHRLGLIP+ S + + + D L+ + +S+Q + V
Sbjct: 61 YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKEENNSNQLVVV 106
Query: 121 TSKDLYS-SDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
TS DL S D V PV++ VDP I+I +L Q + + +KG GK
Sbjct: 107 TSNDLVSIGDKRVAPVNYRNDVDP-----------IVITQLGPRQNIHMVCYVKKGTGKF 155
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAKW+P F +I IN++ M SL+ E+K+++ E P KVFD +V++ E
Sbjct: 156 HAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVGEKVFIRGEE 215
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ +E A +G+ LV + K D F+F VE TG Q++ +E +K+K
Sbjct: 216 NCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKKF 272
>gi|449709854|gb|EMD49037.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica KU27]
Length = 283
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 153/297 (51%), Gaps = 29/297 (9%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+ Y R P + E K++ F + TD SM N LRRV++AE PTIAI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
L DEFIAHRLGLIP+ S + + + D L+ + +S+Q + V
Sbjct: 61 YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKEENNSNQLVVV 106
Query: 121 TSKDLYS-SDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
TS DL S D V PV++ VDP I+I +L Q + + +KG GK
Sbjct: 107 TSNDLVSIGDKRVAPVNYKNDVDP-----------IVITQLGPRQNIHMVCYVKKGTGKF 155
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAKW+P F +I IN++ M SL+ E+K+++ E P KVFD +V++ E
Sbjct: 156 HAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVGEKVFIRGEE 215
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ +E A +G+ LV + K D F+F VE TG Q++ +E +K+K
Sbjct: 216 NCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKKF 272
>gi|167386476|ref|XP_001737769.1| DNA-directed RNA polymerase subunit D [Entamoeba dispar SAW760]
gi|165899221|gb|EDR25860.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba dispar
SAW760]
Length = 283
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 153/297 (51%), Gaps = 29/297 (9%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+ Y R P + E K++ F + TD SM N LRRV++AE PTIAI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
L DEFIAHRLGLIP+ S + + + D L+ + +S+Q + V
Sbjct: 61 YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKKENNSNQLVVV 106
Query: 121 TSKDLYS-SDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
TS DL S D V PV++ VDP I+I +L Q + + +KG GK
Sbjct: 107 TSNDLVSIGDKRVAPVNYRNDVDP-----------IVITQLGPRQNIHMVCYVKKGTGKF 155
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAKW+P F +I IN++ M SL+ E+K+++ E P KVFD +V++ E
Sbjct: 156 HAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVGEKVFIRGDE 215
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ +E A +G+ LV + K D F+F VE TG Q++ +E +K+K
Sbjct: 216 NCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKKF 272
>gi|449546952|gb|EMD37921.1| hypothetical protein CERSUDRAFT_50160 [Ceriporiopsis subvermispora
B]
Length = 283
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 153/294 (52%), Gaps = 52/294 (17%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IR+ K D F L + D ++AN+ RRVM+A++PTIAIDLVEIE N++VL DEFIAH
Sbjct: 9 PTVRIRDQKSDRVNFVLENVDLAVANSFRRVMMADLPTIAIDLVEIETNTTVLPDEFIAH 68
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD-QTLDVTSKDLY- 126
RLG++PL S+ +MR++RDC C + CE+CSV L C D T+D+TS L
Sbjct: 69 RLGMVPLASKNCDEAMRYTRDC-TCTSN--CEYCSVTLSLNVACGEDATTMDITSNHLEV 125
Query: 127 -----------------SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
+ S P +F P G D + +++ K+R+GQEL+L+ IA
Sbjct: 126 IPGGGQGGYWDAGDAEGGEELSKRPKNFGHPVGKDDPNVP-PVLLCKIRKGQELKLKCIA 184
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
+KG K+HAKWSP + V F Y+P L W ES + + N +
Sbjct: 185 KKGTAKEHAKWSPCSAVAFEYDPHN----------KLRHTSYWFESDARAEWPLSENAKE 234
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
EA + DDE + A+ + F VE+ G++ ++V+
Sbjct: 235 ------EAPSRDDEPF------------DFNARPNKFYMEVETDGSLGPEEVVM 270
>gi|327303580|ref|XP_003236482.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
gi|326461824|gb|EGD87277.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
Length = 351
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 151/291 (51%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+ RR ++AE+PT+AID+VEIEVN+SVL DEFI+H
Sbjct: 13 PQVTVREAEPYRVDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ M +SRDCD + C C + L AKC +++ + V ++DL
Sbjct: 73 RLGLIPLCSKNCDTDMLYSRDCDC---EAGCARCVINLSLHAKCTTEEIMKVYARDLVVV 129
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV DP G +G II KLRRGQE++ I +KGI K+HAKW+P
Sbjct: 130 GDRANEWVGNPV-VTDPEG-------KGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPT 181
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE-AYTYDD 242
A V F Y+P H N L W E P K + + N G + + YD
Sbjct: 182 AAVGFEYDP--HNN--------LRHVDYWFEEDPVKEWPLSANAGWETAQPKDLPFNYD- 230
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A ++F +ES G ++ +V I ++++KL
Sbjct: 231 ------------------ATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKL 263
>gi|302654573|ref|XP_003019090.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
gi|291182788|gb|EFE38445.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
Length = 351
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 151/291 (51%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+ RR ++AE+PT+AID+VEIEVN+SVL DEFI+H
Sbjct: 13 PQVTVREAEPYRVDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ M +SRDCD + C C + L AKC +++ + V ++DL
Sbjct: 73 RLGLIPLCSKNCDTDMLYSRDCDC---EAGCARCVINLSLHAKCTTEEIMKVYARDLVVV 129
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV DP G +G II KLRRGQE++ I +KGI K+HAKW+P
Sbjct: 130 GDRANEWVGNPV-VTDPEG-------KGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPT 181
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE-AYTYDD 242
A V F Y+P H N L W E P K + + N G + + YD
Sbjct: 182 AAVGFEYDP--HNN--------LRHVDYWFEEDPVKEWPLSANAGWETAQPKDLPFNYD- 230
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A ++F +ES G ++ +V I ++++KL
Sbjct: 231 ------------------ATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKL 263
>gi|296412916|ref|XP_002836165.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629972|emb|CAZ80356.1| unnamed protein product [Tuber melanosporum]
Length = 340
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 162/314 (51%), Gaps = 55/314 (17%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R P++ I+E +A+ L + D + ANALRR+M+AE+PTIAID+VEI+ N+SV+ DEF+
Sbjct: 12 RGPQITIKEADSRHAQIVLSNCDLAFANALRRIMLAEIPTIAIDIVEIQTNTSVIPDEFL 71
Query: 68 AHRLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY 126
HRLG++PL S + ++RDC D CE CSV L A+C + + V ++DL
Sbjct: 72 CHRLGMVPLDSTNIDDKLIYTRDCFC---DQYCERCSVTLSLHARCTGEDNVTVYARDLV 128
Query: 127 SSDHSVVPVDFV-DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
++ + + + DP G +G +I KLR+GQELRL+ IA+KGI K+HAKW+P A
Sbjct: 129 IAEGAQLGSPVINDPEG-------QGTVICKLRKGQELRLKCIAKKGIAKEHAKWAPTAA 181
Query: 186 VTFMYEPEI---HIN----EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
V F Y+P HI+ ED E + W E ++ E +
Sbjct: 182 VGFEYDPWNKLRHIDYWYEEDAKEEWPKSKYADWEEPP----------------IEGEPF 225
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV-R 297
YD A F +ES G++ +++ I+ L++KL AV
Sbjct: 226 NYD-------------------AVPSRFYLDIESAGSLPPDEILQQGIKYLQEKLAAVIE 266
Query: 298 LSEDTVEADDQFGE 311
+ E D FG+
Sbjct: 267 TFSNKNETGDGFGD 280
>gi|19075824|ref|NP_588324.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe 972h-]
gi|13124820|sp|P37382.2|RPB3_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide
gi|256599717|pdb|3H0G|C Chain C, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599729|pdb|3H0G|O Chain O, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2465184|dbj|BAA22566.1| polymerase II third largest subunit (subunit 3)
[Schizosaccharomyces pombe]
gi|3790255|emb|CAA21444.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 297
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 156/289 (53%), Gaps = 46/289 (15%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ IR + + F L +T ++AN+LRRV++AE+PT+AIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 72 GLIPLTSER-----AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY 126
G+IPL S + + ++R+CD D C CSVE L AKC + T+++ ++DL
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123
Query: 127 SSDHSVV--PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
S +S + P+ DP + RG +I KLR+ QE+ LR IA+KGI K+HAKWSP +
Sbjct: 124 VSSNSSLGHPI-LADP-------KSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTS 175
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P L+ W E+ DAE +
Sbjct: 176 AVAFEYDP----------WNKLQHTDYWFEND----------------ADAEWPKSKNAD 209
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
++ G+P + F VES G+I +++++ + +L++KL
Sbjct: 210 WEEPPREGEP--FNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKL 256
>gi|402076627|gb|EJT72050.1| DNA-directed RNA polymerase II subunit RPB3 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 340
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 151/292 (51%), Gaps = 39/292 (13%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
VKI FEL + D S+ANA+RRVM+AE+PTIAID EI+ N+SVL DEFIAHRL
Sbjct: 17 VKIYHADSVRVNFELSNVDLSLANAVRRVMLAEIPTIAIDNCEIKENTSVLADEFIAHRL 76
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PL + + +SRDCD + C+ CSV + A+C D V+ Y+ D
Sbjct: 77 GLVPLDARGVADLNYSRDCDC---EQYCDNCSVTIEINARCEVDDPGHVSK--FYAKDLW 131
Query: 132 VV---PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
VV P +V D+ GII+ KLR GQE+R+R IA+KGI K+HAKW PA + F
Sbjct: 132 VVGNPPNKYVGKPVITDPDEN-GIILFKLRYGQEIRIRCIAKKGIAKEHAKWCPATAIGF 190
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-GQVYVVDAEAYTYDDEVIKK 247
Y+P + + L L W E P + + + N + + E + YD
Sbjct: 191 EYDP-----HNRLRHLDL-----WYEKDPDEEWPLSKNAEREPAPQEGERFDYD------ 234
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
A + F F VE+ G + +V I+ L++KL V L+
Sbjct: 235 -------------AVPNRFYFDVETAGNLPPDAIVQEGIKTLQEKLAGVILA 273
>gi|388581049|gb|EIM21360.1| DNA-directed RNA polymerase II subunit RPB3 [Wallemia sebi CBS
633.66]
Length = 316
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 158/313 (50%), Gaps = 47/313 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V++R L+ + F L D D ++ANALRR++IA++PT+AID+V IE NSSVL DEFIAHR
Sbjct: 2 RVRVRSLESERINFVLEDVDLALANALRRILIADLPTMAIDIVNIEENSSVLVDEFIAHR 61
Query: 71 LGLIPLTSERAMSM-RFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL---- 125
LG++PL S + ++RDC D C CSVE L KC + +T+ VTS L
Sbjct: 62 LGMVPLISTACDKLINYNRDCVCLD---HCPKCSVELELNIKCTTPETVLVTSNHLQIKG 118
Query: 126 -----YSSDHSVVPVDFVDPAGYDSTDQQRG---IIIVKLRRGQELRLRAIARKGIGKDH 177
S + P+ D G Q G I + KLR+GQELR+ IA+KGI K+H
Sbjct: 119 QVANDTSGNLIDPPIGLPDNFGLPINYHQEGAYPITLCKLRQGQELRINCIAKKGINKEH 178
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA 237
AKW P + V F Y+P L+ W E + + N E
Sbjct: 179 AKWGPTSAVAFEYDP----------YNKLKHTHYWFEQDERAEWPLSANA-------TEE 221
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
DD I + A+ +F F VE+TGA++ ++L A L+ KL +
Sbjct: 222 APPDDSPIG------------LNAEPRTFYFDVEATGALEPKDMILLAFAELQNKLAGIV 269
Query: 298 LSEDTVEADDQFG 310
L+ D + DQ G
Sbjct: 270 LALD--QPTDQEG 280
>gi|67471071|ref|XP_651491.1| DNA-directed RNA polymerase II subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56468232|gb|EAL46103.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 283
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 153/297 (51%), Gaps = 29/297 (9%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+ Y R P + E K++ F + TD SM N LRRV++AE PTIAI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
L DEFIAHRLGLIP+ S + + + D L+ + +S+Q + V
Sbjct: 61 YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKEENNSNQLVVV 106
Query: 121 TSKDLYS-SDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
TS DL S D V PV++ VDP I+I +L Q + + +KG GK
Sbjct: 107 TSNDLVSIGDKRVAPVNYKNDVDP-----------IVITQLGPRQNIHMVCYVKKGTGKF 155
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAKW+P F +I IN++ M SL+ E+K+++ E P K+FD +V++ E
Sbjct: 156 HAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKLFDYQEVGEKVFIRGEE 215
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ +E A +G+ LV + K D F+F VE TG Q++ +E +K+K
Sbjct: 216 NCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKKF 272
>gi|452987978|gb|EME87733.1| hypothetical protein MYCFIDRAFT_129897 [Pseudocercospora fijiensis
CIRAD86]
Length = 342
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 154/318 (48%), Gaps = 60/318 (18%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
KF L +T + AN+LRRVM+AEVPTIAIDLVEIE N+SVL DEF+AHRLGLIPL+++
Sbjct: 10 KFRLSNTSLAFANSLRRVMLAEVPTIAIDLVEIENNTSVLADEFLAHRLGLIPLSTKGVD 69
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRA-KCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
M RDC C D C+ CSV L A SDQ L V ++DL+ V+ P
Sbjct: 70 EMIDFRDC-TC--DEYCDNCSVVLRLNAVNRSSDQNLKVFARDLF--------VESAAPG 118
Query: 142 GYDSTD---------------------QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
GY+ T+ G +I +LRRGQELR++ +A+KGI K+HAKW
Sbjct: 119 GYNRTNGVNGNSVDELPPRGHPIIMDPAGHGPLICQLRRGQELRIKCVAKKGIAKEHAKW 178
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A + F Y+P + + + K W E + ++ P G+ + DAE
Sbjct: 179 APTAAIAFEYDPWNKLRHTTL-WYETDPKAEWPEPAKNGEWEEPPQEGEPFNYDAEP--- 234
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
+ F +E TG + Q++ + I VL+ K ++
Sbjct: 235 -----------------------NQFYIDLEGTGVMPPDQILHSGIRVLQNKFASIIKEL 271
Query: 301 DTVEADDQFGELGAHMRG 318
D D Q G G
Sbjct: 272 DAGADDGQQNGFGGFSPG 289
>gi|323348153|gb|EGA82407.1| Rpb3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 240
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 141/233 (60%), Gaps = 12/233 (5%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFXESESTTNVYSKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
Y+P ++ + E S +E W +S + D PN G + A+A T+
Sbjct: 180 YDPWNKLKHTDYWYEQDSAKE---WPQSKNCEYED-PPNEGDPFDYKAQADTF 228
>gi|296812527|ref|XP_002846601.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
gi|238841857|gb|EEQ31519.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
Length = 359
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 149/276 (53%), Gaps = 45/276 (16%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 82
F L D + AN+ RR ++AE+PT+AID+VEIEVN+SVL DEFI+HRLGLIPL S+
Sbjct: 37 FRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDT 96
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-----SSDHSVVPVDF 137
M +SRDCD +G C+ C + L AKC S++ + V ++DL +++ PV
Sbjct: 97 DMLYSRDCDC---EGGCQRCVINLSLHAKCTSEEIMKVYARDLVVVGDRANEWVGNPV-L 152
Query: 138 VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
DP G +G II KLRRGQE++ I +KGI K+HAKW+P A V F Y+P H N
Sbjct: 153 TDPEG-------KGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPTAAVGFEYDP--HNN 203
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLV 257
L W E P K + + N G + A+ P
Sbjct: 204 --------LRHVDYWFEEDPIKEWPLSANAGW----------------ETAQPRDMP--F 237
Query: 258 EIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ A+ ++F +ES G ++ +V AI ++++KL
Sbjct: 238 DYDAQPNTFYIDIESIGNLEPDAVVQQAIIMMQRKL 273
>gi|326469671|gb|EGD93680.1| RNA polymerase II subunit 3 [Trichophyton tonsurans CBS 112818]
gi|326478798|gb|EGE02808.1| RNA polymerase II subunit 3 [Trichophyton equinum CBS 127.97]
Length = 351
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 150/291 (51%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+ RR ++AE+PT+AID+VEIEVN+SVL DEFI+H
Sbjct: 13 PQVTVREAEPYRVDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ M +SRDCD + C C + L AKC ++ + V ++DL
Sbjct: 73 RLGLIPLCSKNCDTDMLYSRDCDC---EAGCARCVINLSLHAKCTTEDIMKVYARDLVVV 129
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV DP G +G II KLRRGQE++ I +KGI K+HAKW+P
Sbjct: 130 GDRANEWVGNPV-VTDPEG-------KGPIICKLRRGQEVKFNCIVKKGIAKEHAKWAPT 181
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE-AYTYDD 242
A V F Y+P H N L W E P K + + N G + + YD
Sbjct: 182 AAVGFEYDP--HNN--------LRHVDYWFEEDPVKEWPLSANAGWETAQPKDLPFNYD- 230
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A ++F +ES G ++ +V I ++++KL
Sbjct: 231 ------------------ATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKL 263
>gi|1834323|dbj|BAA09316.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 156/289 (53%), Gaps = 46/289 (15%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ IR + + F L +T ++AN+LRRV++AE+PT+AIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 LTIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 72 GLIPLTSER-----AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY 126
G+IPL S + + ++R+CD D C CSVE L AKC + T+++ ++DL
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123
Query: 127 SSDHSVV--PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
S +S + P+ DP + RG +I KLR+ QE+ LR IA+KGI K+HAKWSP +
Sbjct: 124 VSSNSSLGHPI-LADP-------KSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTS 175
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P L+ W E+ DAE +
Sbjct: 176 AVAFEYDP----------WNKLQHTDYWFEND----------------ADAEWPKSKNAD 209
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
++ G+P + F VES G+I +++++ + +L++KL
Sbjct: 210 WEEPPREGEP--FNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKL 256
>gi|145506343|ref|XP_001439135.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406313|emb|CAK71738.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 171/312 (54%), Gaps = 44/312 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I EL D+ KF + D S+ANA+RRVMIAEVP +AI V+I N+S L+DEF+A R
Sbjct: 13 RIEILELSDEKCKFSF-EGDLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 71 LG--------LIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
L IPL ++ V F LR K +D L++TS
Sbjct: 72 LAKCMIGKLMQIPLDDQKT---------------------KVVFTLRQKNLNDAPLEITS 110
Query: 123 KDL-----YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
+ L + ++ PV P ++ GI I +L + Q + +R A KG GK H
Sbjct: 111 QHLEPEFGQVGEMAIRPVRMFSPIN----GKEVGIPITRLGKNQSVHVRCHALKGFGKMH 166
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-E 236
AKW+P TF +E E++ + +SLSL EKQS +S P VF +D N Q +V+A E
Sbjct: 167 AKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMDAN--QDLIVNAIE 224
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ +E I+ AE+M KP L+++ K++ +IFTVES G +KA+ +V A+ VL++K+D +
Sbjct: 225 KCVFCEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVDEI 284
Query: 297 RLSEDTVEADDQ 308
S+D A Q
Sbjct: 285 --SQDLSFAQQQ 294
>gi|323508505|dbj|BAJ77146.1| cgd1_2710 [Cryptosporidium parvum]
Length = 252
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 131/224 (58%), Gaps = 7/224 (3%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R PK +I EL + +F L +TD SMAN LRR+++AE+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
HR+GLIPL S F D C+ +C CSVE+ L C T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124
Query: 128 -SDHSVVPVDFVDPAGYDSTD-QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
+ ++VP+ P DS D GI+I KL GQ + +R A KGIGK HAKW P +
Sbjct: 125 VATSTLVPMPV--PKKDDSVDGMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSV 182
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
TF E ++ IN L +L+L++++ V P VF + +T +
Sbjct: 183 ATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSK 226
>gi|258565481|ref|XP_002583485.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907186|gb|EEP81587.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 345
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 151/291 (51%), Gaps = 47/291 (16%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +R+++ F L D + AN+LRRVM+ EVPT+AID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVRDVETHRVDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-- 126
RLGLIPL S+ + M ++RDCD +G C C + L AKC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARDCDC---EGGCSRCIITLQLHAKCTGEGVMVVYARDLVVI 129
Query: 127 ---SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+++ PV DPAG +G II KLRR QE+++ +KGI K+HAKW+P
Sbjct: 130 GDRANEWVGNPV-INDPAG-------KGPIICKLRRDQEVKMTCTVKKGIAKEHAKWAPT 181
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE-AYTYDD 242
A + F Y+P H N L W E P K + + N + + + YD
Sbjct: 182 AAIGFEYDP--HNN--------LRHVDYWYEEDPVKEWPVSANAEWEHPAPPDMPFDYD- 230
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A +F VES G ++ +V I VL++KL
Sbjct: 231 ------------------AAPSTFYLDVESIGNLEPDAIVQQGISVLQRKL 263
>gi|212533887|ref|XP_002147100.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072464|gb|EEA26553.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 370
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 138/231 (59%), Gaps = 31/231 (13%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 82
F+L + D ++ANALRR MIAEVPT+AID+VE+EVN+SVL DEF+AHRLGLIPL S+
Sbjct: 44 FKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDN 103
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVTSKDLY-----SSDHSVVPVD 136
M ++RDC C + C CSV L A+C+ +D + V S+DL +++ PV
Sbjct: 104 DMEYNRDC-TC--ESWCSRCSVRLTLHARCNQADDVMKVYSRDLVVTGDRANEWVGNPV- 159
Query: 137 FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
DP G +G +I KL +GQEL+L IARKGI K+HAKWSP + V F Y+P ++
Sbjct: 160 ITDPEG-------KGPLIAKLIKGQELKLTCIARKGIAKEHAKWSPTSAVGFEYDPHNNL 212
Query: 197 N-------EDLMESLSLEEKQSW-VESSPTKVFDID--PNTGQVYVVDAEA 237
ED + + E W + P + FD D PNT + VD E+
Sbjct: 213 RHLDYWYEEDPAKEWPISENGKWETPNPPDQPFDYDAQPNT---FYVDVES 260
>gi|156082852|ref|XP_001608910.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154796160|gb|EDO05342.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 382
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 171/351 (48%), Gaps = 60/351 (17%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+ +S Q P + I L F L + D + AN+LRR+M++E+P++AI++V + N+S
Sbjct: 1 MEWSSRQLRPSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTS 60
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
VL+DE+IAHRLGL+P+ S A + + C D +C C+VE+ L KC D T V
Sbjct: 61 VLHDEYIAHRLGLLPIESSSARNFEYRDKCTCSD---KCSRCTVEYSLDVKCM-DDTRVV 116
Query: 121 TSKDLY------SSDHSVVPVDFVDPA--------GYDSTDQQR---------------- 150
T D+ S + P+ P+ G +D QR
Sbjct: 117 THYDINLDSWENSRGNVNAPMPVPRPSADALGNAPGDQGSDPQRVNSSGNATARNVQNPD 176
Query: 151 -----------------GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPE 193
GI IVKL+RGQ L L+ A KG+GK HAKW A V + EP
Sbjct: 177 GPHTGAVDRKSGSVPTGGIPIVKLKRGQCLSLKMTATKGLGKFHAKWM-VANVAYKMEPV 235
Query: 194 IHINEDLMESLSLEEKQSWVESSPTKVFDI-DPNTGQVYVVDAEAY-------TYDDEVI 245
I IN + E ++L EK V+S P KVF + +P+ AE Y DE +
Sbjct: 236 ITINRQVAEKMNLNEKTQIVQSCPRKVFKLSNPHGAYSTATKAEIVIDNNLNCIYCDECL 295
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+A MG L+ + E F FT+ES GAI +++ ++ L++KL ++
Sbjct: 296 NQAREMGYRDLIRVQPDETKFHFTIESNGAISPEKILEICLDTLEEKLGSL 346
>gi|323337216|gb|EGA78470.1| Rpb3p [Saccharomyces cerevisiae Vin13]
Length = 240
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 120/183 (65%), Gaps = 6/183 (3%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+VKIRE D F L + D +MAN+LRRVMIAE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ ++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F
Sbjct: 123 N-LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFE 179
Query: 190 YEP 192
Y+P
Sbjct: 180 YDP 182
>gi|123448560|ref|XP_001313008.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121894876|gb|EAY00079.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 322
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 160/313 (51%), Gaps = 24/313 (7%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P++ + + +F L + ANALRRVMIAEVPT+A+D VE N+S L DE+IAH
Sbjct: 13 PQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGD--GQCEFCSVEFHLRAKC--HSDQTLDVTSKDL 125
RL LIP SE A + C+ CDG G C C+V + + A C SD ++VTS DL
Sbjct: 73 RLALIPFVSEDADKFFYHSQCN-CDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDL 131
Query: 126 -------YSSDHSVVPVDF-VDPAGY----DSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
++ ++ + V PA DS Q + I KL GQ LRL A RKGI
Sbjct: 132 KLIAPHKWADKSTMGSIHIGVKPATLFANGDSNPQP--VTITKLAPGQTLRLAAYIRKGI 189
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFD--IDPNTGQVY 231
G++HAKWSP T+ I E + + +EK+ V S P K +D N +
Sbjct: 190 GRNHAKWSPVCVSTYHQVASIDFREAYKQIMDQKEKEEVVASCPKKCLKMGLDDN---IQ 246
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V + E T+ ++ I+ AE G + I +K F+F VE+ G++ +V + L
Sbjct: 247 VANFEDCTFCNQCIRTAEVHGHKDAIVIQSKRGLFVFNVETIGSLSPENVVTRGFQALTN 306
Query: 292 KLDAVRLSEDTVE 304
KLD + + D ++
Sbjct: 307 KLDQFKKNVDELQ 319
>gi|154274952|ref|XP_001538327.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414767|gb|EDN10129.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 576
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 148/277 (53%), Gaps = 47/277 (16%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 82
F L D + AN+LRR ++AE+PT+AID+VEIE N+SVL DEFI+HRLGLIPL S+
Sbjct: 50 FRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDA 109
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY-----SSDHSVVPVDF 137
M +SRDCD +G C C V L+A+C + + V ++DL +++ PV
Sbjct: 110 DMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDLVIVGDRANEWVGNPV-I 165
Query: 138 VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
+D G +G +I KLRRGQE+++ IA+KGI K+HAKW+P A V F Y+P H N
Sbjct: 166 MDAEG-------KGPVICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDP--HNN 216
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLV 257
L+ W E P K + I N + E +P +
Sbjct: 217 --------LKHVDYWYEEDPIKEWPISANA-------------------EWETPAQPDMP 249
Query: 258 EIY-AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
Y A+ +F VES G ++ +V I VL++KL
Sbjct: 250 FDYDAQPSTFYIDVESIGNLEPDAIVQQGITVLQRKL 286
>gi|449298899|gb|EMC94913.1| hypothetical protein BAUCODRAFT_123413 [Baudoinia compniacensis
UAMH 10762]
Length = 389
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/314 (35%), Positives = 159/314 (50%), Gaps = 62/314 (19%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V IR D F L+ T ++AN+LRR ++AE+PTIAIDLVEIE N+SVL DEF+AH
Sbjct: 17 PRVTIRSANDTTISFVLQHTSLALANSLRRTILAEIPTIAIDLVEIESNTSVLPDEFLAH 76
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR-AKCHSDQTLDVTSKDLYSS 128
R+GLIPL++ M ++RDC AC D C+ CSV L A + D L V ++DL +
Sbjct: 77 RMGLIPLSTRDVEDMFYTRDC-AC--DEFCDNCSVVLQLNVANRNLDHNLKVFARDLTVT 133
Query: 129 DHSVVPVDFVDP----------AGYDST--------------DQQRGIIIVKLRRGQELR 164
P+ DP AG S +Q+G ++ LR+GQ+L+
Sbjct: 134 RVDGTPI--TDPRSTAHLTNGAAGLHSHAEELPPRGFPILMDPEQKGPLLCSLRKGQDLK 191
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEE--KQSWVESSPTKVFD 222
LR IA+KGI K+HAKW+P A + F Y+P N+ +L EE K+ W ES + ++
Sbjct: 192 LRCIAKKGIAKEHAKWAPTAAIGFEYDPH---NKLRHTTLWHEEDAKKEWPESK-NREWE 247
Query: 223 IDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
P GQ + + A+ + F +E TG + +V
Sbjct: 248 EPPQEGQNF--------------------------DFVAEPEQFFLNLEGTGVMPPDGVV 281
Query: 283 LNAIEVLKQKLDAV 296
I L+QKL V
Sbjct: 282 HAGIRTLQQKLATV 295
>gi|1834322|dbj|BAA09315.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 155/289 (53%), Gaps = 46/289 (15%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ IR + D F L ++ ++AN+LRRV++AE+PT+AIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 ITIRNISRDSVDFVLTNSSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 72 GLIPLTSER-----AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY 126
+IPL S + + ++R+CD D C CSVE L AKC + T+++ ++DL
Sbjct: 67 DMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123
Query: 127 SSDHSVV--PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
S +S + P+ DP + RG +I KLR+ QE+ LR IA+KGI K+HAKWSP +
Sbjct: 124 VSSNSSLGHPI-LADP-------KSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTS 175
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V F Y+P L+ W E+ DAE +
Sbjct: 176 AVAFEYDP----------WNKLQHTDYWFEND----------------ADAEWPKSKNAD 209
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
++ G+P + F VES G+I +++++ + +L++KL
Sbjct: 210 WEEPPREGEP--FNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKL 256
>gi|389638262|ref|XP_003716764.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|351642583|gb|EHA50445.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|440465143|gb|ELQ34483.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
Y34]
gi|440489706|gb|ELQ69335.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
P131]
Length = 330
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 162/310 (52%), Gaps = 50/310 (16%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
VKI + FEL + D S+AN++RRVM+AE+PT+AID EI+ N+SVL DEFIAHRL
Sbjct: 17 VKIFHADSVHVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRL 76
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHS---DQTLDVTSKDLYSS 128
GL+PL++ A + ++RDCD + CE CSV + AKC S + + V ++D+
Sbjct: 77 GLVPLSARGASELVYARDCDC---EQYCENCSVIITIHAKCESEDPNYVMKVYARDMVVD 133
Query: 129 DHSV-----VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
V PV DP G G+I+ KLRR QE+ +R +A+KGI K+HAKW PA
Sbjct: 134 GRRVNQSVGTPV-ITDPDGL-------GVILFKLRRNQEVHIRCVAKKGIAKEHAKWCPA 185
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-GQVYVVDAEAYTYDD 242
+ F Y+P + + L L W ES+ + + + N + + E + YD
Sbjct: 186 TAIGFEYDP-----HNKLRHLDL-----WYESNAKEEWPLSENAIREPPPQEGEPFDYD- 234
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL-DAVRLSED 301
A + F F VE+ GA+ +V + VL++KL + V L E
Sbjct: 235 ------------------AVPNRFYFDVETCGALDPDVIVQEGLRVLQEKLANLVMLIEK 276
Query: 302 TVEADDQFGE 311
T E+ G+
Sbjct: 277 TDESKGMGGD 286
>gi|409044983|gb|EKM54464.1| hypothetical protein PHACADRAFT_258319 [Phanerochaete carnosa
HHB-10118-sp]
Length = 399
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 162/301 (53%), Gaps = 46/301 (15%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+IR+LK D F L + D ++AN+ RR+M+A++PT+AID+VEI+ N+SVL DEFI+HRL
Sbjct: 9 VRIRDLKKDRVNFVLENVDMALANSFRRIMMADIPTVAIDIVEIDSNTSVLPDEFISHRL 68
Query: 72 GLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHS-DQTLDVTSKDL---- 125
G+IPL S +MR++R+C + C+FC+V L +C + + LDVTS L
Sbjct: 69 GMIPLVSTNCDEAMRYTRECTC---ESFCQFCAVVLQLNIRCETAGEHLDVTSNHLEFVN 125
Query: 126 YSSDH-------SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
S+++ S P +F P G + + ++I ++ +GQE+R R IA+KGI K+HA
Sbjct: 126 LSNNYDDPGEEISKRPENFGYPVGKNDPNVPP-VLIARIGKGQEIRARCIAKKGIAKEHA 184
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
KWSP + V + Y+P L W ES P K + + N + E
Sbjct: 185 KWSPCSAVAYEYDPHN----------KLRHTSYWFESDP-KEWPLSENAKE------EDP 227
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRL 298
+DE + AK + F VE+ G++ +VL + +L+ K+ + L
Sbjct: 228 PREDEPF------------DYMAKANKFYMEVETDGSMTPKDVVLKGLGLLQTKIATLSL 275
Query: 299 S 299
S
Sbjct: 276 S 276
>gi|345565094|gb|EGX48049.1| hypothetical protein AOL_s00081g153 [Arthrobotrys oligospora ATCC
24927]
Length = 345
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 151/288 (52%), Gaps = 38/288 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V IR+ A F L + D + AN++RR+++AEVPT+AIDLVE+ NSSVL DE ++H
Sbjct: 14 PTVTIRKADSTRADFVLSNVDLAFANSIRRIILAEVPTLAIDLVEVINNSSVLPDELLSH 73
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLGL+PL S M ++RDCD DG CE CSV L AKC D+ + V ++DL +
Sbjct: 74 RLGLVPLESSNIDEKMLYTRDCDC---DGYCERCSVVLTLVAKCTGDRNVTVYARDLAVA 130
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+ + + + + Q+G II KLR+GQEL L+ IA+KGI K+HAKW P A V F
Sbjct: 131 AGAQLGSPVI------TDEAQKGSIICKLRKGQELNLKCIAKKGIAKEHAKWQPCAAVAF 184
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y+P L+ W E+ + N G +E ++
Sbjct: 185 EYDPHN----------KLKHVDYWYETDAKAEWPKSANAGW------------EEPPQEN 222
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
E + A F VE+ G+++ +++ I+ L++KL V
Sbjct: 223 EPF------DYNAVPTKFYVDVETVGSLQPDEILRQGIKYLQEKLATV 264
>gi|393217477|gb|EJD02966.1| insert subdomain of RNA polymerase alpha subunit [Fomitiporia
mediterranea MF3/22]
Length = 284
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 124/202 (61%), Gaps = 27/202 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IRE K D F L + D S AN++RRVM+A+VPT+AID+VE+E+N+SVL DEFIAH
Sbjct: 6 PTVRIRENKKDRVNFVLENVDLSFANSIRRVMMADVPTLAIDIVELEMNTSVLPDEFIAH 65
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG++PL S ++R++RDC + C+FC+V L C D LDVTS L
Sbjct: 66 RLGMVPLISTNCEEAIRYNRDCTC---EVHCDFCTVSLMLDVTCGEDGNLDVTSNHL--- 119
Query: 129 DHSVVPVDFV---DPAGYDSTDQQ---------------RGIIIVKLRRGQELRLRAIAR 170
V+PV++ D G + +++ ++I K+R GQ+++ R IA+
Sbjct: 120 --DVIPVNYTLLNDGEGGEEINKRPEKFGCPVGQGEPGVHPVLICKMRPGQQIKARCIAK 177
Query: 171 KGIGKDHAKWSPAATVTFMYEP 192
KGI K+HAKWSP + V F Y+P
Sbjct: 178 KGIAKEHAKWSPCSAVAFEYDP 199
>gi|302509162|ref|XP_003016541.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
gi|291180111|gb|EFE35896.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 151/301 (50%), Gaps = 57/301 (18%)
Query: 10 PKVKIRELKDDYAK----------FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNS 59
P+V +RE + F L D + AN+ RR ++AE+PT+AID+VEIEVN+
Sbjct: 13 PQVTVREGSPNLTSSPQAEPYRVDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNT 72
Query: 60 SVLNDEFIAHRLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL 118
SVL DEFI+HRLGLIPL S+ M +SRDCD + C C + L AKC +++ +
Sbjct: 73 SVLPDEFISHRLGLIPLCSKNCDTDMLYSRDCDC---EAGCARCVINLSLHAKCTTEEIM 129
Query: 119 DVTSKDLY-----SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
V ++DL +++ PV DP G +G II KLRRGQE++ I +KGI
Sbjct: 130 KVYARDLVVVGDRANEWVGNPV-VTDPEG-------KGPIICKLRRGQEVKFNCIVKKGI 181
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
K+HAKW+P A V F Y+P H N L W E P K + + N G
Sbjct: 182 AKEHAKWAPTAAVGFEYDP--HNN--------LRHVDYWFEEDPVKEWPLSANAGWETAQ 231
Query: 234 DAE-AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ + YD A ++F +ES G ++ +V I ++++K
Sbjct: 232 PKDLPFNYD-------------------ATPNTFYIDIESIGNLEPDAVVQQGIIMMQRK 272
Query: 293 L 293
L
Sbjct: 273 L 273
>gi|399216931|emb|CCF73618.1| unnamed protein product [Babesia microti strain RI]
Length = 324
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 158/292 (54%), Gaps = 16/292 (5%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P + I +L D KF L ++D ++ANALRR+M++E+P +AI++V + N + L+DE+IAH
Sbjct: 10 PFIDITQLTVDTIKFTLHNSDVTLANALRRIMLSEIPCLAIEIVTVLENDTPLHDEYIAH 69
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+P+ S R + D C +C C+V+++L+ C ++ VT D
Sbjct: 70 RLGLLPIDSTRISEFEYR---DKCSCSDKCSKCTVDYNLQVTC-TEPFRTVTHLD----- 120
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
++P ++ P + GI IVK+RR Q + L+ A KGIGK HAKW A V +
Sbjct: 121 --IIPDEYDTPLPLPRSGD--GIPIVKIRRDQSIHLKLTATKGIGKLHAKWV-VANVAYQ 175
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVF--DIDPNTGQVYVVDAEAYTYDDEVIKK 247
EP IN ++M + +++ + S P + + D G + V ++ Y D I
Sbjct: 176 IEPLFKINSEMMGRTTQQDRATIASSCPRGILVSEDDNYGGTIRVTNSLECIYCDSCINT 235
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
+ +G GL+ I E F F+VESTGAI ++V A+ L+ K+ + S
Sbjct: 236 CKDLGFKGLIRIEPDETKFHFSVESTGAIAPEKIVEMALGFLEDKIKQLHQS 287
>gi|402224256|gb|EJU04319.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 401
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 159/310 (51%), Gaps = 66/310 (21%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P ++IREL D +F + D S AN+ RRV++A+V T+AID+VEIEVN++VL DEF++H
Sbjct: 4 PAIRIRELAKDRVEFVMTGVDLSFANSFRRVIMADVATVAIDMVEIEVNTTVLVDEFLSH 63
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
R+G+IPLTS MR+ RDC G C +C++ + + +C ++ ++VTS L
Sbjct: 64 RIGMIPLTSTNCEEGMRYKRDCPCL---GICRYCAIVYDIDVRC-TEGEMNVTSDHL--- 116
Query: 129 DHSVVPVDFVD----------------------PAG--YDSTDQQRGIIIVKLRRGQELR 164
++VP D D PAG D +R I +V++R+GQ L+
Sbjct: 117 --TMVPPDQWDHEEQDSSAAEDILSKRGKNFGVPAGPATDPDPNRRPISLVRMRKGQALK 174
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
R +ARKGI K+HAKWSP A V F Y+P +
Sbjct: 175 ARCVARKGIAKEHAKWSPCAAVGFEYDPHNKLR--------------------------- 207
Query: 225 PNTGQVYVVDAEAYTYDDEVIKKAEAMGKPG-LVEIYAKEDSFIFTVESTGAIKASQLVL 283
+T Y VD +A + + K A+ PG + + + D F F VE+TG++ + L
Sbjct: 208 -HTAYWYEVDEKA---EWPLSKNADEEAPPGDVFDFTSIPDRFYFDVETTGSLAPQEACL 263
Query: 284 NAIEVLKQKL 293
+ L+QKL
Sbjct: 264 RGLAELQQKL 273
>gi|302679472|ref|XP_003029418.1| hypothetical protein SCHCODRAFT_39441 [Schizophyllum commune H4-8]
gi|300103108|gb|EFI94515.1| hypothetical protein SCHCODRAFT_39441, partial [Schizophyllum
commune H4-8]
Length = 257
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 139/249 (55%), Gaps = 32/249 (12%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V IR L+ D F L + D S AN+ RRVM+A++PT+AIDLVE E N++VL DEFIAH
Sbjct: 1 PNVIIRALEKDRVDFVLENVDLSFANSFRRVMMADIPTVAIDLVEFETNTTVLPDEFIAH 60
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVTSKDL-- 125
RLG++PL S+ MR++RDC C++C++E L KC D ++DVTSK L
Sbjct: 61 RLGMVPLISDNCEEGMRYTRDCTCL---SWCQYCAIELVLDVKCTEDNMSMDVTSKHLDV 117
Query: 126 -----------YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIG 174
+ + P F P Y D + I+I ++R+GQ L++R IA+KGI
Sbjct: 118 QNVQPGQPSGAEGDEMASRPPQFGWPVTYREPDAE-PILIARIRKGQALKVRCIAKKGIA 176
Query: 175 KDHAKWSPAATVTFMYEP-----------EIHINEDLMESLSLEEKQSWVESSPTKVFDI 223
K+H+KWSP + V F Y+P E I E+ + + + E ++ + P VFD
Sbjct: 177 KEHSKWSPCSAVGFEYDPYNKLRHTTYWYEKSIEEEWIPNPANTELET--KPQPDDVFDY 234
Query: 224 DPNTGQVYV 232
+ + Y+
Sbjct: 235 NAKPTRFYI 243
>gi|315050740|ref|XP_003174744.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
gi|311340059|gb|EFQ99261.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
Length = 369
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 152/301 (50%), Gaps = 51/301 (16%)
Query: 4 ASYQRFPKVKI----RELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNS 59
+SY +P + + + + F L D + AN+ RR ++AE+PT+AID+VEIEVN+
Sbjct: 21 SSYPLYPLIPVPPNTSQAEPYRVDFRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNT 80
Query: 60 SVLNDEFIAHRLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL 118
SVL DEFI+HRLGLIPL S+ M +SRDCD + C C + L AKC S+ +
Sbjct: 81 SVLPDEFISHRLGLIPLCSKNCDTDMLYSRDCDC---EAGCARCVINLSLHAKCTSEDIM 137
Query: 119 DVTSKDLY-----SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
V ++DL +++ PV DP G +G II KLRRGQE++ I +KGI
Sbjct: 138 KVYARDLVVVGDRANEWVGNPV-VTDPEG-------KGPIICKLRRGQEVKFNCIVKKGI 189
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
K+HAKW+P A V F Y+P H N L W E P K + + N G
Sbjct: 190 AKEHAKWAPTAAVGFEYDP--HNN--------LRHVDYWFEEDPIKEWPLSANAGWETAH 239
Query: 234 DAE-AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ + YD A ++F +ES G ++ +V I ++++K
Sbjct: 240 PKDLPFDYD-------------------AAPNTFYIDIESIGNLEPDAVVQQGIIMMQRK 280
Query: 293 L 293
L
Sbjct: 281 L 281
>gi|396463947|ref|XP_003836584.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
gi|312213137|emb|CBX93219.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
Length = 336
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 145/286 (50%), Gaps = 32/286 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
V+ + + A F +++ + AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HR
Sbjct: 11 NVRFLQADNQRAHFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHR 70
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL S+ + +SRDCD +G C CSV L AKC ++ + V ++DL
Sbjct: 71 LGLIPLCSKGVDDLLYSRDCDC---EGYCSNCSVVLTLNAKCTGNEIMKVYARDLVVE-- 125
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
S+ P D V D G IVKLRRGQ + +R IA+KGI K+HAKW+P+A + F Y
Sbjct: 126 SMTPNDEVGRPVITDADGT-GSCIVKLRRGQAIHMRCIAKKGIAKEHAKWAPSAAIGFEY 184
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
+P + L W E P K + D +D +
Sbjct: 185 DP----------ANKLHHLDYWHEEDPDKEWPKD----------------EDRINLDGGP 218
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ A F + VE+ G + Q+V I VL+ KL +
Sbjct: 219 ANPDEPFDYNAAPTRFFYDVETVGGLDPDQIVGKGITVLQHKLAGI 264
>gi|221054724|ref|XP_002258501.1| dna-directed rna polymerase II [Plasmodium knowlesi strain H]
gi|193808570|emb|CAQ39273.1| dna-directed rna polymerase II, putative [Plasmodium knowlesi
strain H]
Length = 334
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 159/303 (52%), Gaps = 34/303 (11%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+I +L D F L +++ MANALRR+M++E+PT+AID+V + N+S +DEF+AHRL
Sbjct: 15 VEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRL 74
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GLIP+ S + F + C C C++++ ++ KC++ +DVT D+ S +H
Sbjct: 75 GLIPIDSRNVKNFEFR---EKCKCKETCSKCTIQYLIQVKCNNVSKIDVTHYDIESVEHE 131
Query: 132 ---VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+PV F D + Q I IV L + Q L ++ IA KGIGK HAKW P A V++
Sbjct: 132 PNVPMPVPFED--RNNKMAQSNAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVSY 188
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV-DAEAYTYD------ 241
+ ++ I L+ SLS E K S YV+ +AEA+ D
Sbjct: 189 RIDHKVSIKHHLINSLSPEHKLLLANSL----------NKDCYVLKNAEAHDRDMSLRLN 238
Query: 242 --------DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ I+ +G +V+I E F F VES G++ Q+V AIE+L+ KL
Sbjct: 239 ENMSVVMAESCIEVLNELGYKDVVKIIYDETKFHFKVESVGSMPPEQVVEMAIEILENKL 298
Query: 294 DAV 296
+
Sbjct: 299 KTL 301
>gi|332017912|gb|EGI58566.1| DNA-directed RNA polymerase II subunit RPB3 [Acromyrmex echinatior]
Length = 256
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 155/296 (52%), Gaps = 62/296 (20%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V I +L ++ KF++ DT+ S+AN++RRV IAE PT+AID +++E NS+V++
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVVD-- 60
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL 125
++++RDC D C CSVEF L KC +QT VT+ D
Sbjct: 61 -----------------RIQYTRDCQCMDF---CPECSVEFTLDVKCTEEQTRHVTTADF 100
Query: 126 YSSDHSVVPVDFV----DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
SSD V+PV D + Y TD+ I+IVKLR+GQEL+LRA A+KG GK+HAKW+
Sbjct: 101 KSSDPRVLPVTSRHREDDASEYGETDE---ILIVKLRKGQELKLRAYAKKGFGKEHAKWN 157
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
P A V+F Y+P ++ M + W +S +++ + D +++
Sbjct: 158 PTAGVSFEYDP-----DNTMRHTLFPKADEWPKSEYSELEE-----------DQYEASFN 201
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E AK + + F VES+GA+K +V+ I LK KL ++
Sbjct: 202 WE-----------------AKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQ 240
>gi|389583068|dbj|GAB65804.1| DNA-directed RNA polymerase II [Plasmodium cynomolgi strain B]
Length = 334
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 159/293 (54%), Gaps = 14/293 (4%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+I +L D F L +++ MANALRR+M++E+PT+AID+V + N+S +DEF+AHRL
Sbjct: 15 VEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHRL 74
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GLIP+ S + F C + C C++++ ++ KC++ +D+T D+ S +H
Sbjct: 75 GLIPIDSRNVKNFEFREKCKCKET---CSKCTIQYLIQVKCNNVSKIDITHYDIESVEHE 131
Query: 132 ---VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+PV F D + + I IV L + Q L ++ IA KGIGK HAKW P A V++
Sbjct: 132 PNVPMPVPFED--RNNKMAESNAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVSY 188
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVF---DIDPNTGQVYVVDAE--AYTYDDE 243
+ ++ I L+ SLS+E K S + + D + V + E + +
Sbjct: 189 RIDHKVAIKHQLINSLSVEHKLLLANSLNKNCYVLKNADAHDRDVSLKLNENMSVVMAES 248
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
I+ +G +V+I E F F VES G++ Q+V AIE+L+ KL +
Sbjct: 249 CIELLNELGYKDVVKIIYDETKFHFKVESVGSMPPEQVVEMAIEILENKLKTL 301
>gi|169608898|ref|XP_001797868.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
gi|111063879|gb|EAT84999.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
Length = 335
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 151/292 (51%), Gaps = 43/292 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
V+ E A F +++ + AN+LRRVM+AE+PT+AID+VE+ N+SVL DEF+ HR
Sbjct: 11 NVRFLEANSQRANFIVQNFNLETANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHR 70
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL+S + ++RDCD +G C+ C+V L AKC + + V ++DL +
Sbjct: 71 LGLIPLSSRGVDDLLYARDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVFARDLVIESN 127
Query: 131 SVVPVDFVD-PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT-VTF 188
P D V P DS + G IVKLRRGQ + +R IA+KGI K+HAKW+P+A+ + F
Sbjct: 128 R--PNDEVGRPVITDS--EGTGSCIVKLRRGQAINMRCIAKKGIAKEHAKWAPSASAIGF 183
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y+P + L W E N + D E D
Sbjct: 184 EYDP----------ANKLHHLDYWFEE----------NAAAEWPKDEERINLD------- 216
Query: 249 EAMGKPGLVEI----YAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
G P L + A + F + VE+ G + Q+V IE L+QKL +V
Sbjct: 217 ---GGPELPDTEFDHKAVPERFFYDVETVGGLDPDQIVTKGIETLQQKLASV 265
>gi|340053034|emb|CCC47320.1| putative DNA-directed RNA polymerase II subunit 3 [Trypanosoma
vivax Y486]
Length = 337
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 151/283 (53%), Gaps = 20/283 (7%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F+L + D S AN LRRVM+AEVP + + V I N+SVL DE +AHR+GL+PL S +A
Sbjct: 20 EFQLDEVDNSFANGLRRVMLAEVPVLGAESVTIIKNTSVLPDEMLAHRIGLVPLYSMKAR 79
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVTSKDLYSSDHSVVPVDFVDPA 141
M F DC C G G C C V L +C +DQ +L V + L D V PV
Sbjct: 80 KMPFPTDC-LCGGGG-CVECQVTGLLTVRCPADQHSLQVFTDSLKIDDEEVYPV------ 131
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ ++RG+ ++ L R QEL LR + RK I K HAK+ P +TV Y +I IN + M
Sbjct: 132 ----SSEERGLWLLTLGRSQELDLRIVIRKSIAKTHAKFMPVSTVAMRYATDIVINTEGM 187
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYA 261
L+ E+++ P K + + + + D +T + + + G ++
Sbjct: 188 AKLTPEQRKQLACRCPDKAYKRNGSGEAGHADDTGPFTLCRDCVASDQFSGMLDDTLVFV 247
Query: 262 KED-------SFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ +F FTVESTG + Q++ +AI+VL++KL+ VR
Sbjct: 248 RPRRSKRGYYNFTFTVESTGVLPVLQILYDAIDVLRRKLERVR 290
>gi|403157658|ref|XP_003307056.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163504|gb|EFP74050.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 365
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 147/299 (49%), Gaps = 47/299 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+VK+ EL D +A F L + +AN+LRR MIA++ TIAI VE E N+SVL DE IAHR
Sbjct: 20 QVKVTELDDQHAAFILEGIELGLANSLRRTMIADLTTIAIHSVEFEENTSVLPDEMIAHR 79
Query: 71 LGLIPLTSE--RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVTSKDLYS 127
LGLIPL SE + RDC C+ CS+E L KC L V S DL
Sbjct: 80 LGLIPLISEDLDKYLKNWQRDCTCLS---YCDDCSIELVLSTKCTLVGDVLAVNSHDLVI 136
Query: 128 SDHS--------VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ P F P G +Q G++I KLR+GQE+RL+ A KGIG++HAK
Sbjct: 137 TPREDGAHRGDVGKPYQFTMPGG-----EQPGVLITKLRKGQEVRLKCRAIKGIGQEHAK 191
Query: 180 WSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
WSP +T+ F Y+P + DL + + K W + K E
Sbjct: 192 WSPVSTIGFEYDPYNRLGHTDLWFEVGTDPKAEWPLTKNAKY---------------ERP 236
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
DDE V+ +K F F VES G++K +V+ IE L KL +V+
Sbjct: 237 PLDDEP------------VDYTSKPSRFYFDVESAGSLKPDDIVIKGIESLIVKLASVQ 283
>gi|330947784|ref|XP_003306966.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
gi|311315237|gb|EFQ84939.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
Length = 334
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 153/302 (50%), Gaps = 35/302 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
V+ E A F +++ + AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HR
Sbjct: 11 NVRFLEASSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHR 70
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL+S+ + +SRDCD +G C+ C+V L AKC + + V ++DL
Sbjct: 71 LGLIPLSSKGVDDLVYSRDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVYARDLVI--E 125
Query: 131 SVVPVDFVD-PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
S P D V P DS + G IVKLRRGQ + +R IA+KGI K+HAKW+P+A + F
Sbjct: 126 SRTPNDEVGKPVITDS--EGTGSCIVKLRRGQAINMRCIAKKGIAKEHAKWAPSAAIGFE 183
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P + L W E P K + P +D D+
Sbjct: 184 YDP----------ANKLHHLDYWHEEDPEKEW---PKDEARINLDGGPENPDER------ 224
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL-DAVRLSEDTVEADDQ 308
+ A F + VE+ G I Q+V I L+ KL + V+ + D
Sbjct: 225 -------FDFDAVPTRFFYDVETVGGIDPDQIVTKGIHRLQLKLAEIVQGLNGGIAGPDD 277
Query: 309 FG 310
FG
Sbjct: 278 FG 279
>gi|189199142|ref|XP_001935908.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983007|gb|EDU48495.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 334
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 153/302 (50%), Gaps = 35/302 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
V+ E A F +++ + AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HR
Sbjct: 11 NVRFLEANSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHR 70
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PL+S+ + +SRDCD +G C+ C+V L AKC + + V ++DL
Sbjct: 71 LGLVPLSSKGVDDLIYSRDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVYARDLVI--E 125
Query: 131 SVVPVDFVD-PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
S P D V P DS + G IVKLRRGQ + +R IA+KGI K+HAKW+P+A + F
Sbjct: 126 SRTPNDEVGKPVITDS--EGTGSCIVKLRRGQAINMRCIAKKGIAKEHAKWAPSAAIGFE 183
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y+P + L W E P K + P +D D+
Sbjct: 184 YDP----------ANKLHHLDYWHEEDPEKEW---PKDEARINLDGGPENPDER------ 224
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL-DAVRLSEDTVEADDQ 308
+ A F + VE+ G I Q+V I L+ KL + V+ + D
Sbjct: 225 -------FDFDAVPTRFFYDVETVGGIDPDQIVTKGIHRLQLKLAEIVQGLNGGIAGPDD 277
Query: 309 FG 310
FG
Sbjct: 278 FG 279
>gi|399949868|gb|AFP65525.1| DNA-directed RNA polymerase II [Chroomonas mesostigmatica CCMP1168]
Length = 304
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 165/299 (55%), Gaps = 42/299 (14%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
K L++ D S+ N+LRRVMI E+PT+AIDL+ +E+NSS+ +DEF+AHRLGLIPL SE A
Sbjct: 16 TKISLKEIDISLINSLRRVMINEIPTMAIDLIFVEINSSIFHDEFLAHRLGLIPLFSESA 75
Query: 82 MSMRFSRDCDACDGDGQCE-FCSVEFHLRAKCHSDQTLDVTSK----DLYSSDHSVVP-- 134
R++R+C +CE FCS KC +LDV +K D++S+D V+
Sbjct: 76 NQFRYTREC-------ECEKFCS-------KCSVAFSLDVIAKDKYRDVFSTDLIVLNPK 121
Query: 135 -------VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
V + +G + I+I KL +GQ L+L +A+KGIG +HAKWSP + +
Sbjct: 122 ESFFAKHVSPIHDSGTADFPRLEPILISKLSQGQRLKLIGVAKKGIGLEHAKWSPISIIR 181
Query: 188 FMYEPEIHIN-EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY---------VVDAEA 237
+ I+IN DL + K V++ P + D N VY V+ ++
Sbjct: 182 LKRQNTIYININDLNFMTETKIKHELVKNFPEILKQNDSNQNLVYHEKKKFSLSVLTSQK 241
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
D +IKK + +++I + +F +ESTGA+K + NAI++LK+K++ +
Sbjct: 242 LI--DFLIKK--KIDPKKVIKINPDKINFEIYIESTGALKPDFIFQNAIDILKKKINII 296
>gi|124507008|ref|XP_001352101.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|23505130|emb|CAD51912.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 335
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 160/297 (53%), Gaps = 17/297 (5%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I +L D F L ++++ +ANALRR+M++E+PT+AID+V + N+S +DEFIAHR
Sbjct: 12 QINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHR 71
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ S + F C + C C++++ + KC+ +DV+ D+ S +H
Sbjct: 72 LGLIPIDSRNVNNYEFREKCKCKET---CSKCTIQYIIEVKCNHSNKIDVSHYDIESLEH 128
Query: 131 SV-VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
VP+ P G ++ + I IV L + Q L ++ IA KGIGK HAKW P A V++
Sbjct: 129 EPNVPMPI--PHGNKNSVSENAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVSYR 185
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG----------QVYVVDAEAYT 239
+ ++ I +L++ LS E K + + ++ +T Q+ + + +
Sbjct: 186 IDHKVLIKHNLIDKLSNEHKLLLANNLNKDCYILNKDTHDDDNNNNNNIQLKLKENMSVV 245
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ I +G +++I E F F VES G+I Q+V AI++L+ KL +
Sbjct: 246 MAESSIDLLSELGYKDIIKIVYDETMFHFHVESVGSIPPEQIVQMAIDILENKLKVL 302
>gi|345328382|ref|XP_001511558.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ornithorhynchus anatinus]
Length = 234
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 145/254 (57%), Gaps = 46/254 (18%)
Query: 45 VPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCS 103
+PTI D V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++SRDC C+ C CS
Sbjct: 3 LPTI--DWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDC-TCEE--FCPECS 57
Query: 104 VEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRR 159
VEF L +C+ DQT VTS+DL S+ V+PV DP Y +Q I+IVKLR+
Sbjct: 58 VEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRSRDNDPNDYV---EQDDILIVKLRK 114
Query: 160 GQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTK 219
GQELRLRA A+KG GK+H KW+P A V F Y+P ++ + + + W +S +
Sbjct: 115 GQELRLRAYAKKGFGKEHTKWNPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---E 166
Query: 220 VFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKAS 279
+ID +DE + GKP + F + VES G+++
Sbjct: 167 YSEID----------------EDEAQAPYDPNGKP---------ERFYYNVESCGSLRPE 201
Query: 280 QLVLNAIEVLKQKL 293
+VL+A+ LK+KL
Sbjct: 202 TIVLSALSGLKKKL 215
>gi|452003608|gb|EMD96065.1| hypothetical protein COCHEDRAFT_1088202 [Cochliobolus
heterostrophus C5]
Length = 332
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 154/292 (52%), Gaps = 42/292 (14%)
Query: 11 KVKIRELKDDY--AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
++ +R L+ D A F +++ + ANALRRVM+AE+PT+AID+VE+ N+SVL DEF+
Sbjct: 9 QINVRFLQADNQRAHFIVQNFNLETANALRRVMLAEIPTLAIDVVEVFDNTSVLADEFVC 68
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
HRLGLIPL+S+ + +SRDCD +G C+ CSV L AKC + + V ++DL
Sbjct: 69 HRLGLIPLSSKGVDDLLYSRDCDC---EGYCDNCSVVLTLNAKCTGSEVMKVYARDLVI- 124
Query: 129 DHSVVPVDFVD-PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
S P D + P DS + G IVKLRRGQ + ++ IA+KGI K+HAKW+P+A +
Sbjct: 125 -ESRPPNDELGRPVITDS--EGTGSCIVKLRRGQAINMKCIAKKGIAKEHAKWAPSAAIG 181
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
F Y+P + L W E DAE DE
Sbjct: 182 FEYDP----------ANKLHHLDYWHEE------------------DAEKEWPKDEARVN 213
Query: 248 AEAMGKPGLVEIY---AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ G P E + A F + VE+ G I+ Q+V I+ L+ KL V
Sbjct: 214 LDG-GPPNPDEPFNYNAVPTRFFYDVETVGGIEPDQIVAKGIQRLQIKLAEV 264
>gi|451855909|gb|EMD69200.1| hypothetical protein COCSADRAFT_75709 [Cochliobolus sativus ND90Pr]
Length = 332
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 154/292 (52%), Gaps = 42/292 (14%)
Query: 11 KVKIRELKDDY--AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
++ +R L+ D A F +++ + ANALRRVM+AE+PT+AID+VE+ N+SVL DEF+
Sbjct: 9 QINVRFLQADNQRAHFIVQNFNLETANALRRVMLAEIPTLAIDVVEVFDNTSVLADEFVC 68
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
HRLGLIPL+S+ + +SRDCD +G C+ CSV L AKC + + V ++DL
Sbjct: 69 HRLGLIPLSSKGVDDLLYSRDCDC---EGYCDNCSVVLTLNAKCTGSEVMKVYARDLVI- 124
Query: 129 DHSVVPVDFVD-PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
S P D + P DS + G IVKLRRGQ + ++ IA+KGI K+HAKW+P+A +
Sbjct: 125 -ESRPPNDELGRPVITDS--EGTGSCIVKLRRGQAINMKCIAKKGIAKEHAKWAPSAAIG 181
Query: 188 FMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
F Y+P + L W E DAE DE
Sbjct: 182 FEYDP----------ANKLHHLDYWHEE------------------DAEKEWPKDEARVN 213
Query: 248 AEAMGKPGLVEIY---AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ G P E + A F + VE+ G I+ Q+V I+ L+ KL V
Sbjct: 214 LDG-GPPNPDEPFNYNAVPTRFFYDVETVGGIEPDQIVAKGIQRLQIKLAEV 264
>gi|395506009|ref|XP_003757328.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 2
[Sarcophilus harrisii]
Length = 252
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 154/293 (52%), Gaps = 67/293 (22%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP I
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPII----------------- 45
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
GLIPLTS+ + +++SRDC C+ C CSVEF L +C+ DQT VTS+D
Sbjct: 46 ------GLIPLTSDDIVDKLQYSRDC-TCEE--FCPECSVEFTLDVRCNEDQTRHVTSRD 96
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
L S+ V+PV DP Y +Q I+IVKLR+GQELRLRA A+KGIGK+HAKW
Sbjct: 97 LISNTPRVIPVTSRSRDNDPNDYV---EQDDILIVKLRKGQELRLRAYAKKGIGKEHAKW 153
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+P A V F Y+P ++ + + + W +S + +ID
Sbjct: 154 NPTAGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSEID---------------- 189
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+DE + GKP + F + VES G+++ +VL+A+ LK+KL
Sbjct: 190 EDEAQAPYDPNGKP---------ERFYYNVESCGSLRPETIVLSALSGLKKKL 233
>gi|425774142|gb|EKV12459.1| RNA polymerase II subunit 3 [Penicillium digitatum PHI26]
gi|425778395|gb|EKV16523.1| RNA polymerase II subunit 3 [Penicillium digitatum Pd1]
Length = 335
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/286 (34%), Positives = 146/286 (51%), Gaps = 38/286 (13%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+LRR ++AEVPT+A+DL+EIE N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG+IPL S + ++RDCD D C CSV L A+C S + V ++DL
Sbjct: 72 RLGMIPLNSYNCDQDLDYTRDCDCED---HCVRCSVTLSLHARCGS-GIMSVYARDLIVV 127
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+ DP D + +G +I KLR+GQE+++ +A+KG K+HAKW+P A V F
Sbjct: 128 GERIND-KIGDPVTTDP--ENKGPLICKLRKGQEIKMTCLAKKGTAKEHAKWAPTAAVGF 184
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDDEVIKK 247
Y+P + +L W E K + I N + + + YD
Sbjct: 185 EYDP----------NNNLRHVDYWYEQDAAKEWPISENAAWEPAANPDQPFDYD------ 228
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A+ + F F VES G ++ ++ I L++KL
Sbjct: 229 -------------AEPNCFYFDVESIGNLEPDMIIQQGIVSLQRKL 261
>gi|255932027|ref|XP_002557570.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582189|emb|CAP80362.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 335
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 155/310 (50%), Gaps = 53/310 (17%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +RE + F L D + AN+LRR ++AEVPT+A+DL+EIE N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG+IPL S + ++RDCD D C CSV L A+C S + V ++DL
Sbjct: 72 RLGMIPLNSYNCDQDLDYTRDCDCED---HCVRCSVTLSLHARCGSG-IMSVYARDLIVV 127
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+ DP D + +G +I KLR+GQE+++ +A+KG K+HAKW+P A V F
Sbjct: 128 GERIND-KIGDPVTTDP--ENKGPLICKLRKGQEVKMTCLAKKGTAKEHAKWAPTAAVGF 184
Query: 189 MYEPEIHIN-------EDLMESLSLEEKQSW-VESSPTKVFDIDPNTGQVYVVDAEAYTY 240
Y+P ++ +D + + E +W ++P + FD D
Sbjct: 185 EYDPNNNLRHVDYWYEQDAAKEWPVSENAAWEPAANPDQPFDYD---------------- 228
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
A+ + F F VES G ++ ++ I L++KL A +S
Sbjct: 229 --------------------AEPNCFYFDVESIGNLEPDMIIQQGIVSLQRKL-ATTVSV 267
Query: 301 DTVEADDQFG 310
E +D G
Sbjct: 268 LLGEGEDGHG 277
>gi|393246178|gb|EJD53687.1| insert subdomain of RNA polymerase alpha subunit [Auricularia
delicata TFB-10046 SS5]
Length = 380
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 130/217 (59%), Gaps = 40/217 (18%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
MDGA P VKI +L+ D KF L + D + AN+LRRVM+A++PT+AID+VEIE N+
Sbjct: 1 MDGA-----PNVKIEDLRRDRVKFTLENVDLAFANSLRRVMMADLPTVAIDMVEIESNTG 55
Query: 61 VLNDEFIAHRLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD-QTL 118
VL DE +AHRLG+IPL S +MR++RDC+ C C+V+ L+ C++D +TL
Sbjct: 56 VLVDELLAHRLGMIPLVSTNCDEAMRYTRDCNCLS---SCSSCAVQLELKVSCNTDNRTL 112
Query: 119 DVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG-----------------------IIIV 155
DVTS L VVP+D D +D G ++I
Sbjct: 113 DVTSNHL-----EVVPMDSYD--NFDMGGPATGEELSRRVENFGHPVGKHDPSVAPVLIA 165
Query: 156 KLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 192
KLR+GQEL+LR IA+KG+ K+HAKWSP A V+F Y+P
Sbjct: 166 KLRKGQELKLRCIAKKGVAKEHAKWSPCAAVSFEYDP 202
>gi|299751420|ref|XP_001830255.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
gi|298409367|gb|EAU91402.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
Length = 360
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 149/304 (49%), Gaps = 63/304 (20%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V++RE+K D F L + D L RV++A++PT+AIDLVE E N+SVL DE+IAH
Sbjct: 8 PIVRVREVKKDKVNFVLENVD------LARVVMADIPTVAIDLVEFEANTSVLPDEYIAH 61
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG IPL S ++R++RDC QC +C+V+ L C+ D T++VTS L
Sbjct: 62 RLGQIPLISTNCDEAIRYTRDCTCL---SQCSYCAVQLRLDVACNDDTTMEVTSNHL--- 115
Query: 129 DHSVVPVD-------------------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
VVP+D F P G + ++I K+R+GQELR++ IA
Sbjct: 116 --EVVPLDDYMQEEIQHGEEKAKRTQWFGHPVGKNEPGTP-PVLICKIRKGQELRVKCIA 172
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
+KGI K+HAKWSP + V+F Y+P L W ES + + N +
Sbjct: 173 KKGIAKEHAKWSPCSAVSFEYDP----------YNKLRHTSYWYESDIQAEWPLSENAQE 222
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
E DDE + AK + F +E+ G++ +V + L
Sbjct: 223 ------EEPPRDDEPF------------DFNAKPNKFYLEIETDGSLAPQDVVEKGLNEL 264
Query: 290 KQKL 293
+ KL
Sbjct: 265 QAKL 268
>gi|160331749|ref|XP_001712581.1| rpb3 [Hemiselmis andersenii]
gi|159766030|gb|ABW98256.1| rpb3 [Hemiselmis andersenii]
Length = 307
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 180/313 (57%), Gaps = 29/313 (9%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P ++I L + +K L++T+ S+ N+LRRVMI EVPT AIDL+ IE+NSSV++DEF++H
Sbjct: 4 PSLEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSH 63
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+PL S A R++R+CD + C CS +F L D + + ++S+D
Sbjct: 64 RLGLLPLFSNFAHEFRYTRECDC---EQYCSKCSFKFSL------DIYAEKFPQSIFSTD 114
Query: 130 HSVV--PVDF----VDPAGYDS---TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
+ + +F ++P Y S T Q+ I+I KL GQ ++L AIA+KGIGK+HAKW
Sbjct: 115 LNTIDKKENFFYQQINPIHYSSLKETLDQKPILIGKLGIGQRIKLVAIAKKGIGKEHAKW 174
Query: 181 SPAATVTFMYEPEIHIN-EDLMESLSLEEKQSWVESSPTK-VFDIDPNT---GQVYVVDA 235
SP + + P + +++ + ++ + K+ + P +F+ N Q+++
Sbjct: 175 SPISVIKIKKIPFFLFDLKEINKKINSKTKEKISQILPNLFIFEKSKNNLKYNQIFLSKE 234
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAK----EDS-FIFTVESTGAIKASQLVLNAIEVLK 290
E ++ D ++ ++ K G+ + K E+S F +ESTGA+ ++ +I+++K
Sbjct: 235 ENFSQFD-LLTLSKIFLKKGIDMQFIKNRKNENSDFEIYIESTGALNPIEIFRKSIQIIK 293
Query: 291 QKLDAVRLSEDTV 303
+KL+ + +S + +
Sbjct: 294 KKLNLIGISLEKI 306
>gi|156097458|ref|XP_001614762.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148803636|gb|EDL45035.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 333
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 165/319 (51%), Gaps = 15/319 (4%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+I +L D F L +++ MANALRR+M++E+PT+AID+V + N+S +DEF+AHR
Sbjct: 13 EVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEFLAHR 72
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ S + F + C C C++++ ++ KC++ +++T D+ S +H
Sbjct: 73 LGLIPIDSTNVKNFEFR---EKCKCKETCSKCTIQYLIQVKCNNVSKIEITHHDIESVEH 129
Query: 131 SV-VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
VP+ + + I IV L + Q L ++ IA KGIGK HAKW P A V++
Sbjct: 130 EPNVPMPVPLEDRNNQMAESNAIPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVSYR 188
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ-----VYVVDAEAYTYDDEV 244
+ ++ I L+ SLS E K S + + + + + + +
Sbjct: 189 IDHKVAIKHHLINSLSREHKLLLANSLNKNCYVLKNAEAHDREVSLRLNENMSVVMAESC 248
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA----VRLSE 300
I+ +G +V+I E F F VES G++ Q+V AIE+L+ KL ++ S
Sbjct: 249 IEFLNELGYKDVVKIIYDETKFHFKVESVGSMPPEQVVEMAIEILENKLKTLEPQIKASY 308
Query: 301 DTV-EADDQFGELGAHMRG 318
++ E Q E G + G
Sbjct: 309 YSIDEVAKQLKEQGVSLYG 327
>gi|410721684|ref|ZP_11361014.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
gi|410598430|gb|EKQ53003.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
Length = 266
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 156/286 (54%), Gaps = 30/286 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I+ ++D F + D SM NALRR+ + EVPT+AI+ VEI N + + DE +AHR
Sbjct: 2 EIEIKTRENDQLIFTVEGVDVSMVNALRRISMVEVPTLAIETVEILKNDARIFDEALAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT++ S+ + DCD +G C CS+ L+ K +TL S DL S D
Sbjct: 62 LGLVPLTTDLE-SLVPAEDCDC---EGHCSRCSISLILKGK--GPKTL--YSGDLKSEDP 113
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
++ PV D+ I +VKL+ G E+ L AIA+ G GK+HAKW P T + +
Sbjct: 114 NLKPV-------LDT------IPLVKLKEGDEVELEAIAQLGFGKEHAKWQPTTTCAYKH 160
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
PEI+I+ D E+ V+ P V + + Q+ VVD E + +K +
Sbjct: 161 YPEINIDLDKCEAC-----LDCVKECPRNVLEFNEKNNQITVVDLENCSMCRTCVK--DC 213
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
K VEI ED FIF +E+ G++ ++++ A ++L +K D V
Sbjct: 214 QNKAITVEIV--EDKFIFRIETDGSLSPTEVLTRACDILSEKADKV 257
>gi|408381888|ref|ZP_11179435.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
gi|407815336|gb|EKF85921.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
Length = 266
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 154/286 (53%), Gaps = 30/286 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I+ ++++ F + D SM NALRR+ + EVPT+AI+ VE N + + DE +AHR
Sbjct: 2 EIEIKNRENNHLIFTVDGVDVSMVNALRRISMVEVPTLAIETVEFLKNDARIFDEALAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PL+++ SM DCD +G+C CSV L+ K +TL S DL S D
Sbjct: 62 LGLVPLSTDTE-SMVMPEDCDC---EGRCSRCSVSLILKGK--GPKTL--YSGDLKSEDS 113
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
++ PV D+ I +VKL+ G+E+ L AIA+ G+G DHAKW P T + +
Sbjct: 114 NIKPV-------LDT------IPLVKLKEGEEVELEAIAQLGLGSDHAKWQPTTTSAYKH 160
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
PEI I++D E+ V+ P V + D Q+ VVD E + +K +
Sbjct: 161 YPEITIDQDKCEAC-----LDCVKECPRNVLEYDEKNNQITVVDLENCSMCRTCVKDCQN 215
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ + ED FIF +E+ G++ +++ A ++L +K D +
Sbjct: 216 ----NAITVEIVEDKFIFRIETDGSLSPIEVLTRACDILSEKADKI 257
>gi|156089735|ref|XP_001612274.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
gi|154799528|gb|EDO08706.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
Length = 319
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 155/286 (54%), Gaps = 21/286 (7%)
Query: 12 VKIRELKDD--YAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
VKI+ LK+ +A E+ + ++ANA+RR+++AEVPT+AI+ V I N+ V+ DE +AH
Sbjct: 34 VKIKFLKNTRYHAIAEIEGLNVAIANAIRRILLAEVPTLAIESVHIYQNTGVIQDEVLAH 93
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+P + + + + D D + C FHL+ +C + T+ +Y+ D
Sbjct: 94 RLGLVPFDCNPDL-IPYRDNEDLSDKNSVC------FHLKVECKKESLAGRTNLPVYAGD 146
Query: 130 HSVVPVDFVDPAGYDSTDQQ---RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
VP+ + + + I++ KL GQE+ L+A KGIGK HAKWSP T
Sbjct: 147 MKWVPLSDEQAELFKDNPPKPIHKDILLTKLSPGQEIDLKAYLEKGIGKTHAKWSPVCTA 206
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
+ ++P+I +ED E L+ +E + V+ P VF D G++ + T ++
Sbjct: 207 VYRFKPDITFSED--EPLTNDEVEELVQICPMGVFSAD--KGRITTIRPYNCTSCRACLE 262
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ P V I + FIF+VESTGAI + QL L AI VLK+K
Sbjct: 263 RF-----PKRVIIKKLSNHFIFSVESTGAIPSGQLFLKAIGVLKEK 303
>gi|353235564|emb|CCA67575.1| related to RPB3-DNA-directed RNA polymerase II chain
[Piriformospora indica DSM 11827]
Length = 336
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 146/294 (49%), Gaps = 42/294 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IREL+ D F L + AN+ RR M+A++PT+AID+V EVN++VL DEFIAH
Sbjct: 3 PNVRIRELQRDKCNFVLSGVNLGFANSFRRTMMADIPTVAIDMVVFEVNTTVLPDEFIAH 62
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDLY- 126
RLG+IPL S MR++RDCD G C C V L +C T+++TS L
Sbjct: 63 RLGMIPLISTNCDEGMRYTRDCDCELG---CPLCMVVLTLHVRCDMPGTTMNITSDHLQI 119
Query: 127 --------SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ + DF P I+I LR+GQEL++R A+KGI KDHA
Sbjct: 120 QSGGDAWGGEELTKRGEDFGLPVSKSRGFNGHPILIASLRKGQELKIRCEAKKGIAKDHA 179
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
KWSP + F Y+P N+ L W E+ + + N
Sbjct: 180 KWSPCTALGFEYDP---YNK-------LRHTTYWFETDKQAEWPLSANA----------- 218
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
++E + +A + A+ + F F VE+ G++ A +++L ++ ++ +
Sbjct: 219 --EEEEPPREDAP-----FDYNAEPNKFYFNVETDGSLTAKEVILKSLSNMQSR 265
>gi|343427703|emb|CBQ71230.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Sporisorium reilianum SRZ2]
Length = 402
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 166/311 (53%), Gaps = 34/311 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V + L D +F+L DAS+ANA+RRV++AEVPT+AI+ V I N+S++ DE ++HR
Sbjct: 99 RVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 158
Query: 71 LGLIPLT-SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL----------- 118
LGL+PL + + MR + D DA D + +V FHL+AKC +++
Sbjct: 159 LGLVPLAINPDKVLMRNAGD-DADDSN------TVVFHLKAKCERNRSAARGETDPDKLY 211
Query: 119 ---DVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGK 175
+V S+ L DF D D+ I+I KLR GQEL L KGIGK
Sbjct: 212 IGHNVYSEQLQWDAKGGQDEDFADAPPRPVHDK---ILIAKLRPGQELDLELHCEKGIGK 268
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVV 233
DHAK+SP AT T+ P I L++ + E S+V+ P V ++ + Q V+V
Sbjct: 269 DHAKFSPVATATYRLLPHIQ----LLQPIPAEHIDSFVKCFPPGVIGVEGSGDQRKVFVK 324
Query: 234 DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DA T EV + E K V++ D F+F +ESTG I +L+ AI+ L+ K+
Sbjct: 325 DARRDTISREVFRHHEFEDK---VKLGRVRDHFLFDLESTGIIPPEKLLPEAIKTLRSKI 381
Query: 294 DAVRLSEDTVE 304
+R S D +E
Sbjct: 382 STLRKSLDHLE 392
>gi|440296135|gb|ELP88976.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba invadens
IP1]
Length = 280
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 143/282 (50%), Gaps = 30/282 (10%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F + +TD S N LRR+++AEVPTIAI LV + +N+S L DE+IAHRLGLIPL S +
Sbjct: 21 FRIYNTDTSFVNGLRRMIMAEVPTIAIQLVRVHLNTSYLCDEYIAHRLGLIPLDSTKVYD 80
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD-QTLDVTSKDLYSSDHSVVPVDFVDPAG 142
DGD F++R ++ ++L+VTS DL V + P G
Sbjct: 81 FE--------DGD------QTIFNIRVVNENERESLNVTSNDL-----QFVEGKKLFPVG 121
Query: 143 YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLME 202
Y S + III +L Q L + A KG GK HAKW+P F +I INE +
Sbjct: 122 YKSDNP---IIITQLGPRQSLYVDCFATKGTGKFHAKWNPTCQCVFQTLADIQINETKLA 178
Query: 203 SLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAK 262
+L+ E+++++ E P KVF+ G++ V E+ + E ++ +G+ + K
Sbjct: 179 NLTGEQRRTFCEMCPQKVFEFQEINGRITVDHPESCIFCQECTVYSKDIGQRNFCTVTPK 238
Query: 263 EDSFIFTVESTGAIKASQLV-------LNAIEVLKQKLDAVR 297
D FIF VE TG A +V +N LK +L +
Sbjct: 239 TDEFIFKVEGTGVYPAKSVVSYGFGEMINKFSYLKSELGKFK 280
>gi|401400700|ref|XP_003880837.1| rna polymerase II, related [Neospora caninum Liverpool]
gi|325115249|emb|CBZ50804.1| rna polymerase II, related [Neospora caninum Liverpool]
Length = 346
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 21/291 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+K + + FEL+ DA++ NALRR++I+EVPTIAI+ V+I N+ V+ DE +AHRL
Sbjct: 61 IKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTIAIETVQIWQNTGVVQDEVLAHRL 120
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV--TSKDLYSSD 129
GLIP + + + D + ++ L KC ++Q+L TS +Y+ D
Sbjct: 121 GLIPFVVDPTALNYRQPNQEFTDEN------ALRVSLHVKC-TEQSLGPHQTSLPVYARD 173
Query: 130 HSVVPVDFVDPAGYDSTDQQ---RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
P+ + + + I+I KLR GQE+ L+A KG+GK HAKWSP T
Sbjct: 174 IKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKWSPVCTA 233
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
+ EPEI E + EE P VFD++ TG+ Y T I+
Sbjct: 234 VYRLEPEIVFKEPIQG----EEASDLCSLCPMGVFDVEDTTGEAYARYPRNCTTCRACIE 289
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ P +E+ +D FIF++ESTG++ A L AIE+LK+K R
Sbjct: 290 RF-----PNGIELRKIKDHFIFSIESTGSVPAPLLFKMAIEILKEKALTFR 335
>gi|124804792|ref|XP_001348113.1| DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
gi|23496369|gb|AAN36026.1|AE014842_48 DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
Length = 333
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 150/276 (54%), Gaps = 17/276 (6%)
Query: 25 ELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSM 84
E+++ D S+ANALRR+M++EVPTIAI+ V + N+ ++ DE + HRLGLIP + + +
Sbjct: 63 EIKNMDVSIANALRRIMLSEVPTIAIEKVNMYQNTGIIADEILCHRLGLIPFKFDADL-I 121
Query: 85 RFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYD 144
+ D + + C FC F L K S +T + + +YS D P++ ++
Sbjct: 122 NYKEDNEKYN-HLNC-FC---FKLHVKFSSKRTGNDNYQSIYSKDLKWCPINEQQRIKFE 176
Query: 145 STDQQ---RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ I+I K+ GQE+ L +KGIGK HAKWSP T + P N +
Sbjct: 177 KNPPKVVDENILITKISSGQEIELICFLQKGIGKTHAKWSPVCTAVYKMYPHFSFNTN-- 234
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYA 261
E LS EEK+ V P KVFDI+ ++ Q++V + + + I+K P +
Sbjct: 235 EQLSYEEKKDLVNICPQKVFDIE-DSQQIFVKNPLSCSTCRVCIEKY-----PKKISFQK 288
Query: 262 KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+++ FIFT+ESTG A+ + A+ +L+QK+ V+
Sbjct: 289 EKNHFIFTIESTGCFSAADIFKKALFILRQKVINVK 324
>gi|328853564|gb|EGG02702.1| hypothetical protein MELLADRAFT_72730 [Melampsora larici-populina
98AG31]
Length = 359
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/309 (35%), Positives = 157/309 (50%), Gaps = 51/309 (16%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
+DG++ Q VK+ EL + +A F + D ++AN+LRR ++A++ T+AI VE E N+S
Sbjct: 14 IDGSNLQ----VKVTELDERHAAFVVEGVDLALANSLRRTIMADLTTVAIHSVEFEENTS 69
Query: 61 VLNDEFIAHRLGLIPLTSE--RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQT 117
VL DE IAHRLGL+PL SE + RDC C+ CS+E L K +T
Sbjct: 70 VLPDEMIAHRLGLMPLMSEDLDKYLKNWQRDCTCLS---FCDDCSIELVLSVKSTLPGET 126
Query: 118 LDVTSKDLY------SSDHSVV--PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
L+VTSKDL D V PV F P G +Q G++I KLR+GQE++L+ A
Sbjct: 127 LEVTSKDLVITPREDGGDRGDVGKPVQFTLPNG-----EQPGVLITKLRKGQEVKLKCRA 181
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINE-DLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGI ++HAKWS +T+ F Y+P + DL + + + W + K F+ P
Sbjct: 182 IKGIAQEHAKWSAVSTIGFEYDPHNRLGHTDLWYEVGTDARAEWPLTKNAK-FERPP--- 237
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
DDE V+ K F F VES G ++ +V+ IE
Sbjct: 238 -----------LDDEP------------VDFTTKPSRFYFDVESAGNLRPEDIVVKGIES 274
Query: 289 LKQKLDAVR 297
L KL AV+
Sbjct: 275 LIVKLAAVQ 283
>gi|407925105|gb|EKG18126.1| DNA-directed RNA polymerase RBP11-like protein [Macrophomina
phaseolina MS6]
Length = 287
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 129/255 (50%), Gaps = 45/255 (17%)
Query: 48 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFH 107
+AIDLVE+E N+SVL DEFI HRLGLIPL S + ++RDCD + CE CSV
Sbjct: 1 MAIDLVEVEKNTSVLADEFICHRLGLIPLNSRGCEDVAYTRDCDC---EQYCENCSVLLT 57
Query: 108 LRAKCHSDQTLDVTSKDLYSS----DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQEL 163
L A+C D+ + V ++DL S + V DP G+ G II KLR+GQEL
Sbjct: 58 LNARCTGDEVMTVYARDLLVSAARANEWVGSPVIKDPNGH-------GAIICKLRKGQEL 110
Query: 164 RLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI 223
++R IA+KGI K+HAKW+P A + F Y+P L + W E P K + I
Sbjct: 111 KMRCIAKKGIAKEHAKWAPTAAIGFEYDPHN----------KLRHLEYWFEDDPQKEWPI 160
Query: 224 DPNTG--QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
N + E + YD A+ F F +ES G ++ +
Sbjct: 161 SDNANFEGDPPQEGEPFNYD-------------------AQPTQFYFNLESVGGLEPDTI 201
Query: 282 VLNAIEVLKQKLDAV 296
+L ++VL+QKL V
Sbjct: 202 MLQGVKVLQQKLAEV 216
>gi|392573616|gb|EIW66755.1| hypothetical protein TREMEDRAFT_34640 [Tremella mesenterica DSM
1558]
Length = 347
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 157/307 (51%), Gaps = 29/307 (9%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V ++ L +F+L DAS+ANALRRV+IAEVPT+AI+ V + N+S++ DE + HRL
Sbjct: 50 VSLQRLTPSTLEFDLVGVDASIANALRRVLIAEVPTVAIEDVYVWNNTSIMQDEVLCHRL 109
Query: 72 GLIPL-TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC---HSDQTLDVTSKDLYS 127
GL+PL R M R + + A D D +V F LR KC Q + +
Sbjct: 110 GLVPLRIDPREMIFRANPNAGALDTD------TVVFQLRVKCDRQPGTQGETDPKRKYWD 163
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAK 179
SD +++ +PAG T +R I++ KLR GQ + L ARKG G DHAK
Sbjct: 164 SDVYTGMLEW-EPAGAQKTKWKRKEPKPVDPDILLCKLRPGQLIDLTCFARKGTGADHAK 222
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT---GQVYVVDAE 236
+SP AT ++ P I I + +E +Q +V+S P V I+ + Q V ++
Sbjct: 223 FSPVATASYRLLPHIIIR----SPIPVEHQQKFVQSFPPGVIGIEKDKRGQPQCVVKNSR 278
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
T EV++ AE K L I D FIF +ES G K LV AI++L K+ AV
Sbjct: 279 RDTVSREVLRHAEFEDKVQLTRI---RDHFIFNIESVGQYKPEDLVPEAIKILLNKISAV 335
Query: 297 RLSEDTV 303
D +
Sbjct: 336 EAGLDKL 342
>gi|66356630|ref|XP_625493.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|46226487|gb|EAK87481.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|323509937|dbj|BAJ77861.1| cgd8_300 [Cryptosporidium parvum]
Length = 344
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 153/295 (51%), Gaps = 21/295 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+K+ ELK DY F++ DAS+ANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD---QTLDVTSKDLYSS 128
GLIP+ + + D D + + C F L KC D +TSK +YS
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170
Query: 129 DHSVVPVDFVDPAGYDSTDQQ---RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
D +P+ + T + I+I KLR GQ + K IG+ HAKWSP T
Sbjct: 171 DLVWIPLSDNQRKKFGKTPPKVVTDDILITKLRPGQSIEAILYCEKNIGRVHAKWSPVCT 230
Query: 186 VTFMYEPEIHI-NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
++ PE N + S +L+ + + P KVFDI+ TG + T
Sbjct: 231 ASYRLLPEFGFPNGPISGSDALKLRDT---VCPMKVFDIEDVTGNAVPTNPRNCTTCRAC 287
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
I+K P +++ + FIF++E+TG I +LV AI++L++K + ++ S
Sbjct: 288 IEKF-----PNKIKLLKDKFHFIFSIETTGCIPPVELVKTAIDILRKKGEKIKSS 337
>gi|443917515|gb|ELU38215.1| DNA-directed RNA polymerase II polypeptide [Rhizoctonia solani AG-1
IA]
Length = 381
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 150/305 (49%), Gaps = 57/305 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P + IR++K F L + + AN+LRRV +A++PTIAIDLVEIE N++VL DEF+AH
Sbjct: 9 PLLTIRDIKKQSVNFVLEGVELAFANSLRRVCMADLPTIAIDLVEIESNTTVLPDEFLAH 68
Query: 70 RLGLIPLTSERAMSMRFSRDCDA-CDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL--- 125
RLG++PL S +CD C +C++CSVE +L ++Q +D+TS +L
Sbjct: 69 RLGMVPLVST---------NCDEDCTCISRCKYCSVELYLNVS-STNQPVDITSNNLDVV 118
Query: 126 --------------YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
+ P +F P G D + +++ ++R+GQELRLR IA+K
Sbjct: 119 PSGGGEFGGEDEGEEGDELQKRPPNFGTPIGKDDPNVPP-VLLCRIRKGQELRLRCIAKK 177
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY 231
G K+HAKWSP V F Y+P N+ L W Y
Sbjct: 178 GTAKEHAKWSPCTGVGFEYDP---YNK-------LRHTTYW------------------Y 209
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
VD+ A E K+ E + AK + F F +E+ G + ++VL + L+
Sbjct: 210 EVDSRAEWPLSENAKEEEPPRDDESFDYMAKPEKFYFDIETDGKVAPREVVLKGLIELQT 269
Query: 292 KLDAV 296
KL +
Sbjct: 270 KLGNI 274
>gi|67611563|ref|XP_667165.1| DNA-directed RNA polymerase I [Cryptosporidium hominis TU502]
gi|54658273|gb|EAL36936.1| DNA-directed RNA polymerase I [Cryptosporidium hominis]
Length = 344
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 154/305 (50%), Gaps = 41/305 (13%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+K+ ELK DY F++ DAS+ANALRR+++ E+PT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD---QTLDVTSKDLYSS 128
GLIP+ + + D D + + C F L KC D +TSK +YS
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170
Query: 129 DHSVVPVDFVDPAGYDSTDQQRG-------------IIIVKLRRGQELRLRAIARKGIGK 175
D +P+ +D QR I+I KLR GQ + K IG+
Sbjct: 171 DLVWIPL----------SDNQRKKFGKSPPKVVTDDILITKLRPGQSIEAILYCEKNIGR 220
Query: 176 DHAKWSPAATVTFMYEPEIHI-NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVD 234
HAKWSP T ++ PE N + S +L+ + + P KVFDI+ TG +
Sbjct: 221 VHAKWSPVCTASYRLLPEFGFPNGPISGSDALKLRDT---VCPMKVFDIEDVTGNAVPTN 277
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
T I+K P +++ + FIF++E+TG I +LV AI++L++K +
Sbjct: 278 PRNCTTCRACIEKF-----PNKIKLLKDKFHFIFSIETTGCIPPVELVKTAIDILRKKGE 332
Query: 295 AVRLS 299
++ S
Sbjct: 333 KIKSS 337
>gi|448510710|ref|XP_003866410.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
gi|380350748|emb|CCG20970.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
Length = 336
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 157/310 (50%), Gaps = 47/310 (15%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI + + A F+L D S+ANA RR+MIAEVP++A++ V +N+SV+ DE +AHR+
Sbjct: 44 IKITNVSERVANFDLVHIDTSIANAFRRIMIAEVPSVAVETVYSFMNTSVIQDEVLAHRI 103
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD--------------QT 117
GLIPL + + D + D E ++ L C + +
Sbjct: 104 GLIPLKVDPDSLTWVDKTVD--ENDRYTEDNTIVLSLDVTCTKNPHAPKNSTNPSELYRN 161
Query: 118 LDVTSKDL----------YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRA 167
+V +KDL D+ VVP D I++ KLR GQE+ LRA
Sbjct: 162 SNVYAKDLKFEPQGSQLEKYKDNPVVPTD-------------PNILLAKLRPGQEISLRA 208
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT 227
GIG DHAK+SP AT ++ P I D+ E ++ E + + + P+ V +IDP
Sbjct: 209 HCILGIGADHAKFSPVATASYRLLPVI----DIKEPITGELAKKFQKCFPSGVIEIDPK- 263
Query: 228 GQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
G+ YV DA T EV++ E GK V++ + D FIF VESTGA+ ++ ++
Sbjct: 264 GEAYVADARKDTVSREVLRHPEFNGK---VKLGRQRDYFIFQVESTGAMSPEEIFFKSVR 320
Query: 288 VLKQKLDAVR 297
VLK K + +R
Sbjct: 321 VLKNKAEYLR 330
>gi|301095581|ref|XP_002896890.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262108537|gb|EEY66589.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 339
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 152/295 (51%), Gaps = 18/295 (6%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
+R KVKI+ L DD F+L DA++ANALRR+++AEVPT+AI+ V I NSS++ DE
Sbjct: 29 KRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEV 88
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-----HSDQTLDVT 121
+AHRLGLIPL + F + +A D ++ F L C H
Sbjct: 89 LAHRLGLIPLNVDPREFQAFPDNEEAEATDEN----TIVFKLDVTCKFDPEHPKDPTKAI 144
Query: 122 SKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+YS D VP + I++ KLR GQ + L A RKG+GKDHAK+S
Sbjct: 145 HSSVYSRDLEWVPQGNQEERFGSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFS 204
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--QVYVVDAEAYT 239
P AT ++ P++ +LME + + + VE +FDI+ G V D A T
Sbjct: 205 PVATASYRLMPKV----ELMEKVEGTDAKRLVEECQIGLFDIEDIGGVPTAVVKDQRACT 260
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
I++ K + + + D FIF+VES G IK +L+L A+ VL +K +
Sbjct: 261 MCRNCIREPSWNEK---IRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCN 312
>gi|301092813|ref|XP_002997258.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262111439|gb|EEY69491.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 343
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 152/295 (51%), Gaps = 18/295 (6%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
+R KVKI+ L DD F+L DA++ANALRR+++AEVPT+AI+ V I NSS++ DE
Sbjct: 33 KRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEV 92
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-----HSDQTLDVT 121
+AHRLGLIPL + F + +A D ++ F L C H
Sbjct: 93 LAHRLGLIPLNVDPREFQAFPDNEEAEATDEN----TIVFKLDVTCKFDPEHPKDPTKAI 148
Query: 122 SKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+YS D VP + I++ KLR GQ + L A RKG+GKDHAK+S
Sbjct: 149 HSSVYSRDLEWVPQGNQEERFGSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFS 208
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--QVYVVDAEAYT 239
P AT ++ P++ +LME + + + VE +FDI+ G V D A T
Sbjct: 209 PVATASYRLMPKV----ELMEKVEGTDAKRLVEECHIGLFDIEDIGGVPTAVVKDQRACT 264
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
I++ K + + + D FIF+VES G IK +L+L A+ VL +K +
Sbjct: 265 MCRNCIREPSWNEK---IRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCN 316
>gi|390939160|ref|YP_006402898.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
gi|390192267|gb|AFL67323.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
Length = 284
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 147/286 (51%), Gaps = 22/286 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ I E K LRD + N+LRR +++EVPT+A+D V I NSSV DE+I+HRL
Sbjct: 7 IDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRL 66
Query: 72 GLIPLTSERAMS-MRFSRDC-DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
GLIPL S A++ + +C +A D + C V L A L V S+DL SSD
Sbjct: 67 GLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKGVLTVYSRDLVSSD 126
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
VVP+ Y I I+KL + Q +RL A AR G GK+H KWSP +T
Sbjct: 127 PDVVPI-------YGE------IPILKLIKDQSIRLEAYARLGRGKEHIKWSPVSTAAHK 173
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y P I +N E E V + P +F+ D N+ +V E + + E
Sbjct: 174 YIPVITLNS---EKCKGAECSRCVNACPKNIFEADNNSVRV----KEDKILECTFCRLCE 226
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
+ V++ +E+ +IF +E TGA+ A +++ AI +L +KLDA
Sbjct: 227 NVCPTQAVKVSWRENEYIFYLELTGALNARNILIEAINILSRKLDA 272
>gi|297527612|ref|YP_003669636.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
gi|297256528|gb|ADI32737.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
Length = 280
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 150/274 (54%), Gaps = 22/274 (8%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
K ++D + N++RRV+IAEVPT+AID V +NSSV DE+IAHRLGLIPLTSE A+
Sbjct: 14 KLYIKDIPLHVLNSIRRVVIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAAL 73
Query: 83 -SMRFSRDC-DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDP 140
+ +C +A D E C V+ L K + + + S DL +SD V PV
Sbjct: 74 DKYKSPEECKEASDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSDPDVKPV----- 128
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
YD+ I I+ L + QE+RL A AR G GK+HAKWSP + Y +IHI+E
Sbjct: 129 --YDN------IPIIVLGKNQEIRLEAYARLGRGKEHAKWSPVSIAAHKYIADIHIDE-- 178
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIY 260
+ E + VE P + G++ V +D + + E G +++
Sbjct: 179 -KKCLGENCKKCVEVCPRNILSF--KNGKITV--NRDRIFDCSLCRICEEYCPAGAIKVG 233
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+E+ +I T+ESTG++ ++++ A+++L+ K+D
Sbjct: 234 WRENEYILTIESTGSLPPKRILIEAVKILENKID 267
>gi|237839019|ref|XP_002368807.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|211966471|gb|EEB01667.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|221502105|gb|EEE27849.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii VEG]
Length = 346
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 153/292 (52%), Gaps = 23/292 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+K + + FEL+ DA++ NALRR++I+EVPT+AI+ V+I N+ V+ DE +AHRL
Sbjct: 61 LKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRL 120
Query: 72 GLIP-LTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV--TSKDLYSS 128
GLIP + A++ R + + D + ++ L KC ++Q+L TS +Y+
Sbjct: 121 GLIPFIVDPTALNYR-QPNQEVTDEN------ALRVSLHVKC-TEQSLGPHQTSLPVYAK 172
Query: 129 DHSVVPVDFVDPAGYDSTDQQ---RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
P+ + + + I+I KLR GQE+ L+A KG+GK HAKWSP T
Sbjct: 173 HIKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVGKTHAKWSPVCT 232
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
+ EPEI ES+ E+ P VFDI+ TG+ Y T I
Sbjct: 233 AVYRLEPEIVFK----ESIQGEDASDLCSLCPMGVFDIEDTTGEAYARYPRNCTTCRACI 288
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
++ P +E+ +D FIF++ESTG++ A L AIE+LK+K R
Sbjct: 289 ERF-----PKEIELRKIKDHFIFSIESTGSVPAPLLFKMAIEILKEKALTFR 335
>gi|383319963|ref|YP_005380804.1| DNA-directed RNA polymerase subunit D [Methanocella conradii HZ254]
gi|379321333|gb|AFD00286.1| DNA-directed RNA polymerase, subunit D [Methanocella conradii
HZ254]
Length = 262
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 152/290 (52%), Gaps = 34/290 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++I +L D A+F L + +NALRR M+A++P +AID V+I N+SV+ DE +AHR
Sbjct: 2 KLEILDLGDRKARFILSGVTPAFSNALRRAMLADIPKMAIDYVDIYDNTSVMFDEMLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL + M + +CD C G G C C V F L A + V S+DL SSD
Sbjct: 62 LGLIPLKTNLNM-YKLKEECD-CKGAG-CALCQVTFTLSA----EGPCMVHSRDLKSSDP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VP D I I++L+ GQ+L L A+AR G GK+HAK+ P + Y
Sbjct: 115 ETVPAD-------------DNIPIIELKEGQKLVLTAVARLGHGKEHAKFQPVCPPGYKY 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P I I+E + + VE+ P VF +D N +V VV Y+ + +
Sbjct: 162 VPIIEISE------KCDSCKQCVEACPRGVFAVDKN--KVVVVS----PYECSMCELCME 209
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
+++ A +FIF+VE+ G+ A ++V A + ++ K AV L E
Sbjct: 210 ACDINAIKVSADNTAFIFSVETDGSFSAGEVVTRAADAIRAK--AVALGE 257
>gi|145517526|ref|XP_001444646.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412068|emb|CAK77249.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 157/301 (52%), Gaps = 28/301 (9%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
+QR ++ I D+ FE+ + DA +AN+LRR+MIAE+PT+AI V++ N+SV+ D
Sbjct: 26 QFQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPD 85
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC----HSDQTLDV 120
E +AHRLGLIP+ ++ ++F + D + E S++F L AKC +S Q +
Sbjct: 86 EVLAHRLGLIPIIAD---PLQF---VEKDDQEEYNELNSIDFTLYAKCEKKPNSKQDDPI 139
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKG 172
+ ++ HS + P G + III KLR QEL LR I KG
Sbjct: 140 EQQYTNTTVHSSSLI--WQPKGQQAKLFAANPIRPVHSNIIIAKLRENQELNLRLICEKG 197
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
+GK HAKWSP T + P I I L + ++ P KVF I N Q+ V
Sbjct: 198 VGKRHAKWSPVCTAFYKLMPSITIK----NQLDAQRQEKLASICPMKVFGIKGN--QIKV 251
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
V+ T E +++A K VE+ ++ FIF++ES G +A ++L AI+V + K
Sbjct: 252 VNPRNCTTCRECVREANGFEKD--VELNKIDNHFIFSIESVGQYEAKDIMLQAIDVFRSK 309
Query: 293 L 293
+
Sbjct: 310 V 310
>gi|68070451|ref|XP_677137.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|56497133|emb|CAH93597.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
Length = 331
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 167/299 (55%), Gaps = 29/299 (9%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++I+ + + +F L +++A++ANALRR+M++EVPT+AID+V + N+S +DEFIAHR
Sbjct: 10 KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
+GLIP+ S S F + C C C+V++ + KC++ ++V+ D+ + DH
Sbjct: 70 IGLIPIDSRNIKSYEFR---ERCKCKETCSRCTVQYIIEVKCNNANKINVSHYDIEALDH 126
Query: 131 SV-VPVDFVDPAGYDSTDQ-QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+P+ + ++ ++ + I IV L + Q + ++ A KGIGK HAKW P A V++
Sbjct: 127 EPNIPMPIPNDNKNNNIEKMENAIPIVTLSKNQTIHMKLTATKGIGKMHAKWIP-ANVSY 185
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVES-SP----TKVFDIDPN-----TGQVYVVDAEAY 238
+ + +I IN ++ +S E K + +P K D D N + + VV AE+
Sbjct: 186 IIDHKIVINNHEVDKMSKEHKLLIANNLNPDFYILKEMDDDRNVELRLSENMSVVMAESC 245
Query: 239 TYDDEVIKKAEAMGKPG----LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+A+ + G +V+I E F F +ES G++ Q+V AIE+L+ KL
Sbjct: 246 R---------DALNELGYNKDIVKIIYDETKFHFKIESVGSMPPEQIVEMAIEILESKL 295
>gi|429328059|gb|AFZ79819.1| DNA-directed RNA polymerase I, putative [Babesia equi]
Length = 315
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 154/292 (52%), Gaps = 23/292 (7%)
Query: 12 VKIRELKDD--YAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
VKIR +K+ ++ E + S+ANALRR++IAE+PT+AI+ VEI N+ V+ DE +AH
Sbjct: 34 VKIRFIKNTKFHSVVEFEGLNVSIANALRRILIAEIPTLAIETVEIRQNTGVVQDELLAH 93
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGL+P + FS GD S+ F L AKC + + LY+ D
Sbjct: 94 RLGLVPFNVDPE---DFSYKNHESLGDKN----SLCFKLSAKCLRSDSQGRNTLSLYAKD 146
Query: 130 HSVVPVDFVDPAGY--DSTDQQRG-IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
P + + D G I++ KL GQEL L A KGIGK H+KWSP +T
Sbjct: 147 LVWHPFNEAQKLKFQDDPPRPIHGDILLTKLAGGQELDLTAYLEKGIGKTHSKWSPVSTA 206
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
+ ++PEI +E+ LS +K+ E P VF + G + + D + T ++
Sbjct: 207 VYRFKPEITFSEEF--PLSKSDKEELCELCPMDVFSM--KKGDICIEDTLSCTSCRACVE 262
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRL 298
+ P V + + IF++ESTGA+ ++ L+L AIEVLK K ++RL
Sbjct: 263 RF-----PKSVIVKKLNNHIIFSIESTGAVPSATLLLRAIEVLKNK--SIRL 307
>gi|403414765|emb|CCM01465.1| predicted protein [Fibroporia radiculosa]
Length = 387
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 147/291 (50%), Gaps = 31/291 (10%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IRELK D F L + D + AN+ RRVM+A++PT+A+D+VE++ N++VL DEFIAH
Sbjct: 7 PIVRIRELKKDQVNFVLENVDLAFANSFRRVMMADIPTVAVDMVEVQTNTTVLPDEFIAH 66
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLG+IPL S MR++R + + S + H Q + +
Sbjct: 67 RLGMIPLVSHNCDQGMRYTRLSVMVEEGVTMDVTSAHLDVSGP-HRGQEQHWNEEAEGNE 125
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+ + +F P G D + ++I K+R+GQEL++R IA+KGI K+HAKWSP + V F
Sbjct: 126 EMAKRGSNFGHPVGKDDPNVPP-VLICKIRKGQELKVRCIAKKGIAKEHAKWSPCSAVAF 184
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y+P + W E+ + + N + E DD+
Sbjct: 185 EYDPHN----------KMRHTTYWYETDARAEWPLSDNALE------EEPPRDDQPF--- 225
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
+ A+ + F VE+ G++ ++V+ ++ L+QKL ++ L
Sbjct: 226 ---------DYNARPNRFYLNVETDGSLGPQEVVMKGLQELQQKLASLLLG 267
>gi|328851366|gb|EGG00521.1| hypothetical protein MELLADRAFT_111755 [Melampsora larici-populina
98AG31]
Length = 359
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 165/309 (53%), Gaps = 22/309 (7%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D + +++ +KI L +F+L DAS+ANALRR+MIAEVP+IAI+ V + N+S+
Sbjct: 53 DLSEFKKNLNIKISRLSSSAMEFDLVGVDASIANALRRIMIAEVPSIAIEDVFVWNNTSL 112
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
++DE +A RLGLIPL + R D +G + ++ F L A+C + + T
Sbjct: 113 VHDEVLAQRLGLIPLKVD-------PRKLDMRGPEGATDMNTLVFKLVARCSRNPNVSKT 165
Query: 122 SKD---LYS-SDHSVVPVDFV----DPAGYDSTDQ---QRGIIIVKLRRGQELRLRAIAR 170
KD LY+ SD + +D+ PA + S Q I++VK+R GQE+ +
Sbjct: 166 EKDPSILYTDSDVTSGYLDWQPKGDQPALFGSQPPKAVQDDILLVKMRPGQEISIEMHCV 225
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
KGIGKDHAK+SP AT ++ P I I+E ++E E+ S ++ +
Sbjct: 226 KGIGKDHAKFSPVATASYRLLPHIIIHEPILEP-HCEKFTSCFAQGVIEIVKNQHGQKEC 284
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
V++ T EV++ E GK L + D FIF VES+G + +L + A VL
Sbjct: 285 KVLNPRKDTVSREVLRHPEFEGKVSLGRV---RDHFIFNVESSGVYRPEELPIEACLVLL 341
Query: 291 QKLDAVRLS 299
QK+ +VR++
Sbjct: 342 QKIRSVRVA 350
>gi|344232398|gb|EGV64277.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
gi|344232399|gb|EGV64278.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
Length = 336
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 155/298 (52%), Gaps = 21/298 (7%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+VKI +L + + F+L D S+ANALRR+MI+EVP++A + + + N+SV+ DE +AHR
Sbjct: 43 EVKISKLDERESNFDLVHIDTSIANALRRIMISEVPSVAAETIYVFNNTSVIQDEVLAHR 102
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL---DVTSKDLYS 127
+GLIPL ++ + D + + ++ L C + K+LY
Sbjct: 103 IGLIPLKADPDLLTWV--DTAQDEKSKYTDENTIVLTLDVTCTHNPNAPKGSTNPKELYR 160
Query: 128 SDHSVVPVDFVDPAGYDS--------TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ H +P G T I+I KLR GQE+ LRA G+G DHAK
Sbjct: 161 NSHVYAKDLKFEPQGKQVELFKGNPVTAADPNILIAKLRPGQEISLRAHCILGVGSDHAK 220
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP AT ++ P I D+ + +S E+ + + P V DID + G+ YV DA T
Sbjct: 221 FSPVATASYRLMPVI----DIKQPISGEQAKRFQRCFPPGVVDID-SKGEAYVKDARRDT 275
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E GK V++ K D FIF +ESTG + ++ + +I +LK K D +R
Sbjct: 276 VSREVLRHEEFDGK---VKLGRKRDHFIFNIESTGGMPPEEIFIKSIRLLKSKADYLR 330
>gi|213403846|ref|XP_002172695.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
gi|212000742|gb|EEB06402.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
Length = 349
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 159/308 (51%), Gaps = 22/308 (7%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+++ +KI L D F++ DAS+ NA RR++IAE+PT+AI+ V I N+S+L DE
Sbjct: 42 FKKKLNIKITSLDDLNMTFDISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDE 101
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL---DVTS 122
++HRLGLIPL ++ M F R + ++ +V F L KC ++ +
Sbjct: 102 VLSHRLGLIPLKADPDMFKWFVRPGPGMEAT-HTDYDTVVFSLNVKCDFNKEAAPGETDP 160
Query: 123 KDLYSSDHSVVPVDFVDPAGYDS--------TDQQRGIIIVKLRRGQELRLRAIARKGIG 174
K LY + + P G + T I++ KLR GQE+ L A A GIG
Sbjct: 161 KKLYLNSEVLSGELVWKPQGRQAERFADNPLTVVNPNIVVAKLRPGQEIDLEAHAILGIG 220
Query: 175 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID--PN-TGQVY 231
+DHAK+SP +T ++ P IHI +E + E+ + + P V +++ PN +
Sbjct: 221 QDHAKFSPVSTASYRLLPAIHI----LEPIEGEDAIKFQKCFPAGVIELEDGPNGKPRAR 276
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V D T E ++ E K V++ D F++++ESTG IK QL L +I VLK
Sbjct: 277 VADVRKDTVSRECLRHPEFADK---VQLGRVRDYFLYSIESTGIIKPDQLFLKSIAVLKS 333
Query: 292 KLDAVRLS 299
K AV+ S
Sbjct: 334 KCMAVKAS 341
>gi|145518624|ref|XP_001445184.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412628|emb|CAK77787.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 158/305 (51%), Gaps = 36/305 (11%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
+QR ++ I D+ FE+ + DA +AN+LRR+MIAE+PT+AI V++ N+SV+ D
Sbjct: 26 QFQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPD 85
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------HSDQT 117
E +AHRLGLIP+ ++ ++F + D + E S++F L AKC H D
Sbjct: 86 EVLAHRLGLIPIIAD---PLQF---IEKDDQEEYNELNSIDFTLVAKCEKKPNSKHDDPI 139
Query: 118 -LDVTSKDLYSSDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAI 168
T+ ++SS S++ P G + III KLR QEL LR I
Sbjct: 140 EQQYTNTTVHSS--SLI----WQPKGQQAKLFAANPIRPVHSNIIIAKLRENQELNLRLI 193
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KG+GK HAKWSP T + P I I L + ++ P KVF + N
Sbjct: 194 CEKGVGKRHAKWSPVCTAFYKLMPSITIK----NQLDAQRQEKLASLCPMKVFGVKGN-- 247
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
Q+ VV+ T E +++A K VE+ ++ FIF++ES G +A ++L AIEV
Sbjct: 248 QIKVVNPRNCTTCRECVREANGFEKD--VELNKIDNHFIFSIESVGQYEAKDIMLQAIEV 305
Query: 289 LKQKL 293
+ K+
Sbjct: 306 FRSKV 310
>gi|405978280|gb|EKC42685.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Crassostrea
gigas]
Length = 472
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 159/304 (52%), Gaps = 24/304 (7%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D +++F K + + ++ DD +F++ DA++ANA RR+++AEVPT+AI+ V I N
Sbjct: 35 DAWDFKKFKKNFRIDMIKMNDDELEFDMVGIDAAIANAFRRILLAEVPTMAIEKVHIYNN 94
Query: 59 SSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQT 117
+S++ DE +AHRLGLIP+ ++ + S D D ++ F L+ KC + Q
Sbjct: 95 TSIIQDEVLAHRLGLIPIKADPRLFEYKSEGEDFSPED------TIIFQLKVKCTKNSQA 148
Query: 118 LDVTSKDLYSSDHSVVP--VDFVDPAGYDSTDQQ-------RGIIIVKLRRGQELRLRAI 168
D T D DH V + ++ G D+ ++ I+I KLR GQE+ +R
Sbjct: 149 KDTTDPDEMYKDHKVTTKHLKWIPMKGQDTIFKEGDLRPVNDDILIAKLRPGQEIDIRVF 208
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ PEI++ + +L+ EK S V D +
Sbjct: 209 CNKGIGKDHAKFSPVATASYRLLPEIYLKSPVTGALA--EKLQSCFSPGVIVIDTENGNK 266
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
V +A T EV + LVE+ D FIF+VESTG + LV AI+V
Sbjct: 267 VARVANARKDTCSREVFRHDNLK---DLVELKKVRDHFIFSVESTGILPPDILVEEAIKV 323
Query: 289 LKQK 292
L +K
Sbjct: 324 LMKK 327
>gi|296243119|ref|YP_003650606.1| DNA-directed RNA polymerase subunit D [Thermosphaera aggregans DSM
11486]
gi|296095703|gb|ADG91654.1| DNA-directed RNA polymerase, subunit D [Thermosphaera aggregans DSM
11486]
Length = 277
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 152/286 (53%), Gaps = 23/286 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+++ E K + ++ + N++RRV+I+EVPT+AID V NSSV DE++AHR
Sbjct: 2 KIEVLEQKPLLTRLRIKGISLHLLNSIRRVIISEVPTMAIDYVAFMENSSVFYDEYLAHR 61
Query: 71 LGLIPLTSERAM-SMRFSRDCDACDGDGQ-CEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
LGLIPLTS++A+ + +C G E C V L + D+ + + S +L SS
Sbjct: 62 LGLIPLTSDQALWKYKSPEECREAGEKGLFSEDCFVRLSLEGE-GGDEAVTLYSDNLVSS 120
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
D V P I IVKL + Q+++L A AR G GK+H KWSP +
Sbjct: 121 DPDVKP-------------SFGKIPIVKLIKPQKVKLEAYARLGRGKEHIKWSPVSVAAH 167
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y P I +N+ L EE VE+ P +VF +G+V V + D + K
Sbjct: 168 KYVPNILVNQRLCRG---EECLKCVEACPKEVFAF--QSGEVKVRSDK--LLDCTMCKLC 220
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
E + G V++ +ED FI T+E TGA+ A ++L ++ +L++KLD
Sbjct: 221 ENLCPSGAVKVSHEEDEFILTLELTGALSARNVLLESVRILEKKLD 266
>gi|300120859|emb|CBK21101.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 156/300 (52%), Gaps = 24/300 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I D+ FEL DAS+ANALRRV+IAEVPT+AI V + N+SV+ DE + HR
Sbjct: 37 KINILSQSDEQVVFELVGVDASIANALRRVLIAEVPTMAISTVFMNNNTSVMQDEVLCHR 96
Query: 71 LGLIPLTSERAMSMRFSRDCDAC-DGDGQCEFC---SVEFHLRAKCHSDQTLDVTSKDLY 126
LGLIP+ +A + F C +G + +F S++F+LR C S L + +
Sbjct: 97 LGLIPI---KADANDFDYICPPGENGHNRSDFTDKNSLKFNLRVTCPSLSELQKAANNRN 153
Query: 127 SSDHSVVPVDF-VDPAG--YDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHA 178
+V ++ G D + Q G II+ KL GQ + L A KG+G+DHA
Sbjct: 154 VEYLTVYSQSLELEKLGRQLDLPEGQIGLVHDDIILTKLAPGQAIDLECYATKGVGEDHA 213
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAE 236
KWSP T + P I + L+ E+ + ++ P VFDI+ G+ ++V
Sbjct: 214 KWSPVCTAVYRMRPSIRFPKPLVG----EDAERMKQTCPMGVFDIEDIGGEKTLHVAHDL 269
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
T E I+ E K V++ + FIF+VESTG + A LV A+EVLKQK + +
Sbjct: 270 NCTMCRECIRLPENREK---VQLGVIRNDFIFSVESTGCVSAKSLVPRALEVLKQKCETI 326
>gi|344303022|gb|EGW33296.1| RNA polymerase III (C) subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 335
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 156/297 (52%), Gaps = 21/297 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ I+ L + A F+L D S+ANA RR+MIAEVP++A + V + +N+SV+ DE +AHR+
Sbjct: 43 IDIKYLTERTANFDLVHIDTSIANAFRRIMIAEVPSVAAEAVYMFMNTSVIQDEVLAHRI 102
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL---DVTSKDLYSS 128
GLIPL + + + D + + E ++ L C + +K+LY +
Sbjct: 103 GLIPLKVDPDLLSWVDKTQD--ENNRYTEDNTIVLSLDVVCTKNPNAPKNSTNAKELYRN 160
Query: 129 DHSVVPVDFVDPAGYDSTDQQR--------GIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
H +P G + I++ KLR GQE+ LRA GIG DHAK+
Sbjct: 161 SHVYASDLKFEPHGSQLEKFKNNPVVPADPNILLAKLRPGQEISLRAHCILGIGSDHAKF 220
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP AT ++ P I I E + +L++ ++ + P V I+ + G+ YV DA T
Sbjct: 221 SPVATASYRLMPVIDIREPITGALAVNFQKCF----PPGVIGIN-DQGEAYVQDARKDTV 275
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E GK V++ K D FIF VESTGA+ ++ ++ VLK K++ +R
Sbjct: 276 SREVLRHEEFDGK---VKLGRKRDHFIFNVESTGAMSPEEIFFKSVRVLKNKVEYLR 329
>gi|385305361|gb|EIF49344.1| dna-directed rna polymerase ii 45 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 268
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 134/244 (54%), Gaps = 30/244 (12%)
Query: 41 MIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE 100
M+AEVPT+AIDLV+I+ N+SVL DEF+AHRLGL+PL SE ++++RDC D CE
Sbjct: 1 MLAEVPTLAIDLVDIKRNTSVLADEFLAHRLGLVPLESEDIDQLKYTRDCTCED---HCE 57
Query: 101 FCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVP----VDFVDPAGYDSTDQQRGIIIVK 156
CSV L+A+C SD+T++V YSS V+ ++ P D Q++G++I K
Sbjct: 58 KCSVTLQLKARCDSDETMNV-----YSSHLVVISANTGLNLGQPVIRDP--QKKGVLICK 110
Query: 157 LRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP-------EIHINEDLMESLSLEEK 209
L+R QEL + IA+KGI K+HAKWSP + + F Y+P + ED +
Sbjct: 111 LKRHQELNIVCIAKKGIAKEHAKWSPCSAIGFEYDPWNKLRHTDYWYEEDEAKEWPKSAN 170
Query: 210 QSWVESS-PTKVFDIDPNTGQVYV-VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFI 267
W E P + FD + + Y+ V+ +EV K G E+ K + +
Sbjct: 171 CDWEEPPVPGEKFDYNKKPARFYMNVETTGVLKPNEVFSK-------GCTELQKKVANIV 223
Query: 268 FTVE 271
F ++
Sbjct: 224 FELD 227
>gi|260950905|ref|XP_002619749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847321|gb|EEQ36785.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 333
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 152/301 (50%), Gaps = 17/301 (5%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R + I+ + A F+LR D S+ANA RR+MIAEVP++A + V + N+SV+ DE
Sbjct: 35 FKRTFDIDIKYIAGRNANFDLRHIDTSIANAFRRIMIAEVPSVAAETVYVFNNTSVIQDE 94
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL 125
+AHR+GLIPL + + D + + + + T L
Sbjct: 95 VLAHRIGLIPLNVDPDALVWIDPAADEAERFNDTNTIVMSLDVSCTRNPHAPAGTTDPKL 154
Query: 126 YSSDHSVVPVDF-VDPAGYDS--------TDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
+ SV D +P G + I++ KLR GQE+ LR G+G D
Sbjct: 155 LYRNSSVYARDLKFEPQGRQAELFKDSPVVPCDPDILLAKLRPGQEISLRVHCVLGVGSD 214
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAK+SP AT ++ P I D++E +S E+ + + P+ V ID G+ YV DA
Sbjct: 215 HAKFSPVATASYRLMPVI----DILEPISGEQAVRFQKCFPSGVIGID-EKGEAYVADAR 269
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
T EV++ E GK V++ + FIF VESTGA+ +++ L ++ VLK K+D +
Sbjct: 270 KDTVSREVLRHEEFSGK---VKLGRDREHFIFNVESTGAMSPAEIFLKSVRVLKNKVDYL 326
Query: 297 R 297
R
Sbjct: 327 R 327
>gi|325958565|ref|YP_004290031.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
gi|325329997|gb|ADZ09059.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
Length = 262
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 150/286 (52%), Gaps = 30/286 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I++ + + F + D + NA+RR+ EVPT+AI+ VEI N + + DE +AHR
Sbjct: 2 EIDIKQKDETHLLFAIEGVDDAFINAIRRISTVEVPTMAIETVEILKNDAKIFDEALAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PL ++ SM + DCD + C CSV L+ K +T V S DL S D
Sbjct: 62 LGLVPLKTDLE-SMVLASDCDC---EDYCPTCSVTLLLKEK--GPKT--VYSGDLQSQDP 113
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVPV +D+ I ++KL+ GQE+ L A+A+ GIG +H+KW P T + Y
Sbjct: 114 DVVPV-------HDT------IPLLKLKEGQEVELIAVAKLGIGLEHSKWQPTTTCAYKY 160
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P+I I+ D ES L P V++ D + +VD E + ++ EA
Sbjct: 161 YPKITIDSDKCESCGL-----CASECPRAVYEFDEKANTLEIVDIENCSMCKTCVRGCEA 215
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
G + + ++ ++FT+E+ G++ +++ A E+L K D +
Sbjct: 216 ----GAITVEGEKGKYLFTIETDGSLSPEKVLTTACEILSSKSDKI 257
>gi|300175011|emb|CBK20322.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 155/300 (51%), Gaps = 24/300 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I D+ FEL DAS+ANALRRV+IAEVPT+AI V + N+SV+ DE + HR
Sbjct: 37 KINILSQSDEQVVFELVGVDASIANALRRVLIAEVPTMAISTVFMNNNTSVMQDEVLCHR 96
Query: 71 LGLIPLTSERAMSMRFSRDCDAC-DGDGQCEFC---SVEFHLRAKCHSDQTLDVTSKDLY 126
LGLIP+ +A + F C +G + +F S++F+LR C S L + +
Sbjct: 97 LGLIPI---KADANDFDYICPPGENGHNRSDFTDKNSLKFNLRVTCPSLSELQKAANNRN 153
Query: 127 SSDHSVVPVDF-VDPAG--YDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHA 178
+V ++ G D + Q G II+ KL GQ + L A KG+G+DHA
Sbjct: 154 VEYLTVYSQSLELEKLGRQLDLPEGQIGLVHDDIILTKLAPGQAIDLECYATKGVGEDHA 213
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAE 236
KWSP T + P I + L+ E+ + + P VFDI+ G+ ++V
Sbjct: 214 KWSPVCTAVYRMRPSIRFPKPLVG----EDAERMKQICPMGVFDIEDIGGEKTLHVAHDL 269
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
T E I+ E K V++ + FIF+VESTG + A LV A+EVLKQK + +
Sbjct: 270 NCTMCRECIRLPENREK---VQLGVIRNDFIFSVESTGCVSAKSLVPRALEVLKQKCETI 326
>gi|354546273|emb|CCE43003.1| hypothetical protein CPAR2_206460 [Candida parapsilosis]
Length = 336
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 156/310 (50%), Gaps = 47/310 (15%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI + + A F+L D S+ANA RR+MIAEVP++A++ V +N+SV+ DE +AHR+
Sbjct: 44 IKITNVSERVANFDLIHIDTSIANAFRRIMIAEVPSVAVETVYSFMNTSVIQDEVLAHRI 103
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD--------------QT 117
GL+PL + + D + D E ++ L C + +
Sbjct: 104 GLVPLKVDPDSLTWVDKSVD--ENDRYTEDNTIVLSLDVTCTKNPHAPKNSTNPNELYRN 161
Query: 118 LDVTSKDL----------YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRA 167
+V +KDL D+ VVP D I++ KLR GQE+ LRA
Sbjct: 162 SNVYAKDLKFEPQGSQLEKYKDNPVVPTD-------------PNILLAKLRPGQEISLRA 208
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT 227
G+G DHAK+SP AT ++ P I D+ E ++ E + + + P V +ID +
Sbjct: 209 HCILGVGADHAKFSPVATASYRLLPVI----DIKEPITGELAKKFQKCFPPGVIEID-SK 263
Query: 228 GQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
G+ YV DA T EV++ E GK V++ + D FIF VESTGA+ ++ ++
Sbjct: 264 GEAYVADARKDTVSREVLRHPEFNGK---VKLGRQRDYFIFQVESTGAMPPEEIFFKSVR 320
Query: 288 VLKQKLDAVR 297
VLK K + +R
Sbjct: 321 VLKNKAEYLR 330
>gi|70945964|ref|XP_742745.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
gi|56521898|emb|CAH80621.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi
chabaudi]
Length = 331
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 169/310 (54%), Gaps = 32/310 (10%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
M+G + ++ +++I+ + + F L +++ ++ANALRR+M++EVPT+A+D+V + N+S
Sbjct: 1 MNGDNSKKH-EIEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTS 59
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+DEFIAHR+GLIP+ S S F + C C C+V++ + KC++ +DV
Sbjct: 60 PFHDEFIAHRIGLIPIDSRNIKSYEFR---ERCKCKETCSRCTVQYIIEVKCNNANKIDV 116
Query: 121 TSKDLYSSDHSV-VPVDFVDPAGYDSTDQQ-RGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ D+ + DH +P+ + +++ D+ I IV L + Q L ++ A KGIGK HA
Sbjct: 117 SHYDIEALDHEPNIPMPIPNDNKHNNIDKMDTAIPIVTLSKNQTLHMKLTATKGIGKMHA 176
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV----- 233
KW P A V+++ + +I IN ++ + E K +++P+ Y++
Sbjct: 177 KWIP-ANVSYIIDHKIVINHPEVDKMPKEHKLIIAN-------NLNPDC---YILKEMDD 225
Query: 234 --DAEAYTYDDEVIKKAEA-------MG-KPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
D E ++ + AE+ +G +V++ E F F VES G++ Q+V
Sbjct: 226 DRDVELQLSENMSVVMAESCRDTLTELGYNKDIVKVIYDETKFHFKVESVGSMPPEQIVE 285
Query: 284 NAIEVLKQKL 293
AIE+L+ KL
Sbjct: 286 MAIEILESKL 295
>gi|348665187|gb|EGZ05020.1| hypothetical protein PHYSODRAFT_356217 [Phytophthora sojae]
Length = 343
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 152/298 (51%), Gaps = 24/298 (8%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
+R KVKI+ L D+ F+L DA++ANALRR+++AEVPT+AI+ V I NSS++ DE
Sbjct: 33 KRQVKVKIQSLTDEEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEV 92
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-----HSDQTLDVT 121
+AHRLGL+PL + F + +A D ++ F L C H
Sbjct: 93 LAHRLGLVPLNVDPREFQAFPDNEEAEATDEN----TIVFKLDVTCKFDPEHPKDPTKAI 148
Query: 122 SKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+YS D VP + I+I KLR GQ + L A RKG+GKDHAK+S
Sbjct: 149 HSSVYSRDLEWVPQGNQEERFGSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFS 208
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--QVYVVDAEAYT 239
P AT ++ P++ +L E + + + VE +FDI+ G V D A T
Sbjct: 209 PVATASYRLMPKV----ELTEKVQGADAKKLVEECQIGLFDIEDIGGVPTAVVKDQRACT 264
Query: 240 YDDEVIKKAEAMGKPGL---VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
I+ +PG + + + D FIF+VES G +K +L+L A+ VL +K +
Sbjct: 265 MCRNCIR------EPGWNEKISLGRQSDHFIFSVESVGMLKPEELLLEALNVLAEKCN 316
>gi|218884674|ref|YP_002429056.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
gi|218766290|gb|ACL11689.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
Length = 280
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 142/275 (51%), Gaps = 22/275 (8%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
K LRD + N+LRR +++EVPT+A+D V I NSSV DE+I+HRLGLIPL S A+
Sbjct: 14 KLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRLGLIPLKSNEAL 73
Query: 83 S-MRFSRDC-DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDP 140
+ + +C +A D + C V L A L V S+DL SSD VVPV
Sbjct: 74 NKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDLVSSDPDVVPV----- 128
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
Y I I+KL + Q +RL A AR G GK+H KWSP +T Y P I I+
Sbjct: 129 --YGE------IPILKLIKDQSIRLEAYARLGRGKEHIKWSPVSTAAHKYVPAITIDS-- 178
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIY 260
E E V + P +F+ N+ +V E + + E + V++
Sbjct: 179 -EKCKGAECSRCVNACPKNIFEAGNNSVRV----KEDKILECTFCRLCENICPTQAVKVS 233
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
+E+ +I +E TGA+ A +++ AI +L +KLDA
Sbjct: 234 WRENEYILYLELTGALNARNILIEAINILSRKLDA 268
>gi|363752191|ref|XP_003646312.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889947|gb|AET39495.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
Length = 334
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 153/308 (49%), Gaps = 43/308 (13%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+I L D A F+L DAS+ANA RR+MI+EVP++A + V N+SV+ DE +AHR+
Sbjct: 42 VQISHLDDREANFDLIHIDASIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRI 101
Query: 72 GLIPL--------------------TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAK 111
GL+PL T E + M + C A + E + A
Sbjct: 102 GLVPLKVDPDMLTWVDKSLPEAERFTDENTVVMSLNVKCTANPDAPKGSTDPKELYNNAH 161
Query: 112 CHS-DQTLDVTSKDLYS-SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
+S D + K L S + H V+P D I++ KLR GQE+ LR
Sbjct: 162 IYSRDLKFEPQGKQLDSFAKHPVLPTD-------------PDILLAKLRPGQEISLRVHC 208
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
G+G DHAK+SP T ++ P I D++E++ E+ +V+ P V ID G+
Sbjct: 209 ILGVGGDHAKFSPVCTASYRLMPHI----DILETIQGEDATKFVKCFPPGVAAID-EKGE 263
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
Y+ DA T EV++ E GK V++ +D FIF VESTGA+ ++ ++ +L
Sbjct: 264 AYIKDARKDTVSREVLRHPEFEGK---VKLGRVKDHFIFNVESTGAMTPEEIFFKSVRIL 320
Query: 290 KQKLDAVR 297
K K + ++
Sbjct: 321 KNKAEYLK 328
>gi|357460223|ref|XP_003600393.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
gi|355489441|gb|AES70644.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
Length = 399
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 166/327 (50%), Gaps = 51/327 (15%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
YQ F KV+++ + D+ +F++ D ++ANA RR++IAEVPT+AI+ V I N+S++ DE
Sbjct: 83 YQNF-KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDE 141
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ--------T 117
++HRLGLIP+ ++ + F DA G E ++ F +C Q T
Sbjct: 142 VLSHRLGLIPIDADPKL---FEYPDDA--GGENNEKNTIVFKQHVRCEKGQPRLTVKSDT 196
Query: 118 L------------------DVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRR 159
L D K + + +P DPA Y+ +I+ KL
Sbjct: 197 LKWLPNGSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYN-----LDVIVAKLGP 251
Query: 160 GQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTK 219
GQE+ L A A KGIGK HAKWSP AT + PE+ + +D+ + L+ E V P K
Sbjct: 252 GQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEE----LVSKCPAK 307
Query: 220 VFDI-DPNTG--QVYVVDAEAYTYDDEVIKKAEAMGKPGL-------VEIYAKEDSFIFT 269
VFDI D G + V +A A T E I++A+ + G V + +D FIFT
Sbjct: 308 VFDIEDIGRGRKKAVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFT 367
Query: 270 VESTGAIKASQLVLNAIEVLKQKLDAV 296
+ESTGAI L A+++L+ K + V
Sbjct: 368 IESTGAIPPDVLFTEAVKILEDKCERV 394
>gi|358055923|dbj|GAA98268.1| hypothetical protein E5Q_04951 [Mixia osmundae IAM 14324]
Length = 368
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 161/316 (50%), Gaps = 43/316 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+ ++E++ D KF D S+AN LRRV+ +E+PT+AI + ++ NSSVL DEF+AHR
Sbjct: 26 NIAVQEIQHDRVKFAWEGVDLSLANGLRRVLQSEIPTLAIGYISVKHNSSVLPDEFLAHR 85
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPL S ++ + ++ D C D C+ C+V L C S LDVTSKDL
Sbjct: 86 LALIPLQST-GIAHKLEKERDLCGCDDGCDECTVMLQLDVACRSAGKLDVTSKDLV---- 140
Query: 131 SVVP-VDFVDPAGYD--STDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
V+P D D G+ ++ GI+I +L GQ + L A A +GI DHAK P +TV
Sbjct: 141 -VLPRQDGQDRGGFGMPMSEHSNGILIAQLGPGQRITLLATAHRGIALDHAKHCPVSTVG 199
Query: 188 FMYEP--EIHINEDLMESLSLEE---KQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
F Y+P ++H + E ++ K +WV+ +P ++ +P + +D
Sbjct: 200 FEYDPHNKLHHTDLWSEQKDAKDRVSKSTWVK-TPNAKYEREPPS-------------ED 245
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
V + G+P F F VE+ ++ +LV +EVL +KL + + +
Sbjct: 246 AV----DWSGQP---------SRFYFDVETVNSLPPFELVQEGLEVLIRKLAVITQAIEK 292
Query: 303 VEADDQFGELGAHMRG 318
+ D ++GA G
Sbjct: 293 MSVDRP--QMGASTPG 306
>gi|401840259|gb|EJT43153.1| RPC40-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 326
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 155/298 (52%), Gaps = 20/298 (6%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+++ KV I L + A F+L + DAS+ANA RR+MI+EVP +A + V N+SV+ DE
Sbjct: 36 FKKHLKVNISSLDEREANFDLINIDASIANAFRRIMISEVPCVAAEYVYFFNNTSVIQDE 95
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVT-S 122
+AHR+GL+PL + M D D + + ++ L KC + D D T
Sbjct: 96 VLAHRIGLVPLKVDPDMLTWV--DSSLPDDEKFTDENTIVLSLNVKCTRNPDAPKDCTDP 153
Query: 123 KDLYSSDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKGIG 174
K+LY++ H +P G ST I++ KLR GQE+ L+A GIG
Sbjct: 154 KELYNNAHVYARDLKFEPQGRQSTTFAACSVVPADPDILLAKLRPGQEISLKAHCILGIG 213
Query: 175 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVD 234
DHAK+SP +T ++ P+I+I ++S+ E + + + P V ID + + YV D
Sbjct: 214 GDHAKFSPVSTASYRLLPQINI----LQSIKGESAKRFQKCFPPGVIGIDDTSREAYVKD 269
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
A T EV++ E K V++ + FIF VES GA+ ++ ++ +LK K
Sbjct: 270 ARKDTVSREVLRYEEFADK---VKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNK 324
>gi|426193914|gb|EKV43846.1| hypothetical protein AGABI2DRAFT_209410 [Agaricus bisporus var.
bisporus H97]
Length = 357
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 169/315 (53%), Gaps = 29/315 (9%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R +V+I+ L + +F+L DAS+ANA RR+MIAEVPTI I+LV I N+SV+ DE
Sbjct: 42 FRRGLRVEIQRLSNRSIEFDLVGVDASIANAFRRIMIAEVPTICIELVYIWNNTSVIADE 101
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD- 124
++HRLGL+PL + A+ M+F + D+ + ++ F L C + S++
Sbjct: 102 VLSHRLGLVPLNVDPAL-MQFKANLDSA-----TDHNTIVFELDITCTRNPGAPKVSENP 155
Query: 125 --LYSSDHSVVPVDF-VDPAGYDST---------DQQRGIIIVKLRRGQELRLRAIARKG 172
LY +H V+ PAG T I++ KLR GQ +R+ A KG
Sbjct: 156 DELY-INHEVLSGHLRWKPAGDQLTVFEGLPAPGPMNPNIVLAKLRPGQSVRMELHAIKG 214
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
+GKDHAK+SP AT ++ P I I + + SLS + ++ + SP V ID TG V
Sbjct: 215 VGKDHAKFSPVATASYRLLPHIKIKKPIPPSLSEKFQKCF---SP-GVVKIDSRTGSASV 270
Query: 233 --VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
+ + EV++ E + VE+ D F+F VES GA +L+ A++V++
Sbjct: 271 DENNVRKDSVSREVLRHPEFVDS---VELSRVRDYFLFNVESEGAYTPERLLPEALKVMR 327
Query: 291 QKLDAVRLSEDTVEA 305
+K+ ++ + ++A
Sbjct: 328 EKISIIKNATQALKA 342
>gi|255724476|ref|XP_002547167.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135058|gb|EER34612.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 337
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 156/310 (50%), Gaps = 44/310 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI + + F+L D S++NA RR+MIAEVP++A++ V + +N+SV+ DE +A R
Sbjct: 43 EIKITNMGERTGTFDLIHIDTSISNAFRRIMIAEVPSVAVETVYMFMNTSVIQDEVLAQR 102
Query: 71 LGLIP--LTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD------------- 115
+GLIP ++ ++ + S D + D E ++ L C +
Sbjct: 103 IGLIPWNISPDKLSWVDESVDVN----DRFTEDNTIVLSLDVTCTKNPNAPKDATDPNVL 158
Query: 116 -QTLDVTSKDLYSSDHSV-------VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRA 167
+ +V +KDL H PV DP I+I KLR GQE+ LRA
Sbjct: 159 YKNSNVYAKDLKFEPHGTQAEKFRDTPVVPCDP----------NILIAKLRPGQEISLRA 208
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT 227
GIG DHAK+SP AT ++ P I I E + L+ + + + P V ID T
Sbjct: 209 HCILGIGSDHAKFSPVATASYRLLPVIDIKEPITGKLA----EKFQKCFPPGVIGIDSKT 264
Query: 228 GQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
G+ YV DA T EV++ E GK V++ + D FIF VESTGA+ ++ ++
Sbjct: 265 GEAYVADARKDTVSREVLRHPEFDGK---VKLGRQRDHFIFNVESTGAMTPDEIFCKSVR 321
Query: 288 VLKQKLDAVR 297
+LK K + +R
Sbjct: 322 ILKNKAEYLR 331
>gi|409077914|gb|EKM78278.1| hypothetical protein AGABI1DRAFT_121405 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 357
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 169/315 (53%), Gaps = 29/315 (9%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R +V+I+ L + +F+L DAS+ANA RR+MIAEVPTI I+LV I N+SV+ DE
Sbjct: 42 FRRDLRVEIQRLSNRSIEFDLVGVDASIANAFRRIMIAEVPTICIELVYIWNNTSVIADE 101
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD- 124
++HRLGL+PL + A+ M+F + D+ + ++ F L C + S++
Sbjct: 102 VLSHRLGLVPLNVDPAL-MQFKANLDSA-----TDHNTIVFELDITCTRNPGAPKASENP 155
Query: 125 --LYSSDHSVVPVDF-VDPAGYDST---------DQQRGIIIVKLRRGQELRLRAIARKG 172
LY +H V+ PAG T I++ KLR GQ +R+ A KG
Sbjct: 156 DELY-INHEVLSGHLRWKPAGDQLTVFEGLPAPGPTNPNIVLAKLRPGQSVRMELHAIKG 214
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
+GKDHAK+SP AT ++ P I I + + SLS + ++ + SP V ID TG V
Sbjct: 215 VGKDHAKFSPVATASYRLLPHIKIKKSIPPSLSEKFQKCF---SP-GVVKIDSRTGSASV 270
Query: 233 VDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
+ + EV++ E + VE+ D F+F VES GA +L+ A++V++
Sbjct: 271 DENNVRKDSVSREVLRHPEFVDS---VELSRVRDYFLFNVESEGAYTPERLLPEALKVMR 327
Query: 291 QKLDAVRLSEDTVEA 305
+K+ ++ + ++A
Sbjct: 328 EKISIIKNATQALKA 342
>gi|50553838|ref|XP_504330.1| YALI0E23947p [Yarrowia lipolytica]
gi|49650199|emb|CAG79929.1| YALI0E23947p [Yarrowia lipolytica CLIB122]
Length = 339
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 157/295 (53%), Gaps = 18/295 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+VKI L D+Y+ F+L D S+ANA RR+MIA++PTIA++ V I N+S++ DE +AHR
Sbjct: 46 QVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFIHANTSIIQDEVLAHR 105
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD--LYSS 128
LGL+PL R DA + + + S F LR ++ D T K+ +Y+
Sbjct: 106 LGLVPLVINPERINALPRGLDASEIEDYYD-DSNTFVLRLNVTCERLADGTMKNAHIYAR 164
Query: 129 DHSVVPV----DFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
D + P+ +V G ++ + I+I KLR Q + L G G DHAK+SP
Sbjct: 165 DITFDPMGNQCQWVKDEGLENVFKVANPDILIAKLRPNQSINLTMFCHLGFGHDHAKFSP 224
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
AT ++ P I I D ++ +E + + + P V +++ G+ V DA T
Sbjct: 225 VATASYRLMPTITITGD----ITGDEAKKFQKCFPKGVIELE--GGKPVVADARKDTVSR 278
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E GK V++ + D FIF VES+GA++ ++ L ++ L+ K ++
Sbjct: 279 EVLRHEEFNGK---VKLGRRRDHFIFNVESSGALEPDEIFLKSVMELQAKAQTLK 330
>gi|68069197|ref|XP_676509.1| DNA-directed RNA polymerase I [Plasmodium berghei strain ANKA]
gi|56496241|emb|CAH97452.1| DNA-directed RNA polymerase I, putative [Plasmodium berghei]
Length = 334
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 159/310 (51%), Gaps = 22/310 (7%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
D ++ ++KI + +++ E+++ + S+ANALRR+MI+EVPTIAI+ V I N+
Sbjct: 39 FDIKKFEENLEMKIIKNEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTG 98
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
V+ DE + HRLGLIP + + + F +D + C FC F L KC+S +
Sbjct: 99 VIADEILCHRLGLIPFKFDADL-INF-KDTHEKYNNLNC-FC---FKLHVKCNSINNNKI 152
Query: 121 TSKD---LYSSDHSVVPVDFVDPAGYDSTDQQ---RGIIIVKLRRGQELRLRAIARKGIG 174
+++ +YS D P++ ++S + I+I KL GQE+ L KGIG
Sbjct: 153 GNENYQCIYSKDLKWCPLNEEQKIKFESNPPKVVDDNILITKLGNGQEIELICFLEKGIG 212
Query: 175 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVD 234
K HAKWSP T + P D+ E + EK+ + P VFDI+ +G + +
Sbjct: 213 KTHAKWSPVCTAVYKMFPTFDF--DVHEKFTNYEKKDILSICPKNVFDIEE-SGNLVAKN 269
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+ I+K P + K++ FIFTVESTG ++ + A+ +LK+K+
Sbjct: 270 PLDCSSCRACIEKY-----PQKISFQKKKNHFIFTVESTGCFSSANIFKKALNILKEKVM 324
Query: 295 AVR--LSEDT 302
V+ L E T
Sbjct: 325 NVKEMLEEQT 334
>gi|333987645|ref|YP_004520252.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
gi|333825789|gb|AEG18451.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
Length = 278
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 146/285 (51%), Gaps = 30/285 (10%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V I+ D+ F + D NA+RR+ EVPT+AI+ V+I N + + DE +AHRL
Sbjct: 16 VTIKNKDDNLLVFTVEGVDVPFINAIRRICTVEVPTLAIEDVDIYKNDAKIFDEALAHRL 75
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GLIPLT++ SM + +CD + C CSV L+ K +T V SKDL S D
Sbjct: 76 GLIPLTTDLE-SMVLASECDC---EDHCPRCSVSLLLKEK--GPKT--VYSKDLKSQDPQ 127
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
+ P YD+ I I+KL+ G+E+ L AIA+ GIG +HAKW P + Y
Sbjct: 128 LKPT-------YDT------IPIMKLKDGEEVELEAIAQLGIGLEHAKWQPTTACAYKYY 174
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
P+I I+ + ES + VE P + + D +V ++D E + +K E+
Sbjct: 175 PKITIDAEKCESCA-----KCVEECPRGILEFDDENNKVNILDIENCSMCKTCVKGCES- 228
Query: 252 GKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ + +E FIF +E+ G++ +++ A ++L K D +
Sbjct: 229 ---DAITVEGQEGKFIFKIETDGSLPPEEVLTRACDILSGKTDQI 270
>gi|385302721|gb|EIF46838.1| dna-directed rna polymerases i and iii 40 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 340
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 160/321 (49%), Gaps = 49/321 (15%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D ++++ ++ I + + A F+L D S+ANA RR+MI+EVP++AI+ V + N+SV
Sbjct: 36 DLEAFKKKFQLNISYITERTANFDLIGLDTSIANAFRRIMISEVPSVAIEFVYMFNNTSV 95
Query: 62 LNDEFIAHRLGLIPL--------------------TSERAMSMRFSRDC----DACDGDG 97
+ DE +AHRLGL+PL T E + + + C +A GD
Sbjct: 96 IQDEVLAHRLGLVPLKVDPDLLSWVDPNAEEKEKFTDENTIVLSLNVSCTRNPNAVKGDN 155
Query: 98 QCEFCSVEFHLRAKCHSDQTLDVTSKDLYS-SDHSVVPVDFVDPAGYDSTDQQRGIIIVK 156
+ E ++ AK D + + + + DH VVP D I++ K
Sbjct: 156 RPENLYKNSNVYAK---DLKFEPQGRQVETFKDHPVVPCD-------------PNILLAK 199
Query: 157 LRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESS 216
LR GQE+ LRA GI DHAK+SP AT ++ P I I E + +LE + +
Sbjct: 200 LRPGQEISLRAHCVLGIXADHAKFSPVATXSYRLLPLIDIKEPITGKDALEFQDCF---- 255
Query: 217 PTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAI 276
P+ V I+ + G+ YV DA T EV++ + GK L I D FIF VESTGA+
Sbjct: 256 PSGVIGIN-DKGEAYVKDARKDTVSREVLRHEKFNGKVKLGRI---RDHFIFNVESTGAM 311
Query: 277 KASQLVLNAIEVLKQKLDAVR 297
++ ++ VLK K D +R
Sbjct: 312 LPEEIFFKSVRVLKNKADYLR 332
>gi|162606468|ref|XP_001713264.1| DNA-directed RNA polymerase II [Guillardia theta]
gi|12580730|emb|CAC27048.1| DNA-directed RNA polymerase II [Guillardia theta]
Length = 299
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 162/302 (53%), Gaps = 26/302 (8%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+K+ ++ D K + AN++RR+M+ E+PT+AID V IE N+S DEFIAHRL
Sbjct: 1 MKVEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRL 60
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GLIP+ SE A +++SR+CD + +CE CS+ F L H+++T + + +
Sbjct: 61 GLIPIFSENADLIKYSRECDC---ENECEKCSILFTLDV--HANETEKTITSSMVKCSTA 115
Query: 132 VVPVD---FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
P+ ++ +G III KL GQ ++L+A +KGIGK+H+KW+P +++ F
Sbjct: 116 CYPLKTFFIINNSGNSRNYDDYAIIIAKLNPGQNIKLKAYVKKGIGKEHSKWNPISSIKF 175
Query: 189 MYEPEIHIN-EDLMESLS---LEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
+ P +N ++ ++L L + +++++ K D+ N D + D+E
Sbjct: 176 RFYPIYQVNIFEMKKNLRPDILNKLENFIKDG-IKNSDLCYNEKN---SDYKCINLDNE- 230
Query: 245 IKKAEAM-----GKPGLVE-IYAKED--SFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+K E + L E IY E+ + F +E+TG I L+ ++ LKQKL+ +
Sbjct: 231 -RKIELLSIFEKNYLNLEEYIYISENDANVEFFIETTGVINPLNLINKSLIYLKQKLNIL 289
Query: 297 RL 298
L
Sbjct: 290 GL 291
>gi|83286741|ref|XP_730293.1| conjugation stage-specific protein [Plasmodium yoelii yoelii 17XNL]
gi|23489977|gb|EAA21858.1| conjugation stage-specific protein, putative [Plasmodium yoelii
yoelii]
Length = 335
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 166/296 (56%), Gaps = 23/296 (7%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I+ + + +F L ++++++ANALRR+M++EVPT+AID+V + N+S +DEFIAHR
Sbjct: 14 EIEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 73
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
+GLIP+ S + F + C C C+V++ + KC++ +DV+ D+ + DH
Sbjct: 74 IGLIPIDSRNIKNYEFR---ERCKCKETCSRCTVQYIIEVKCNNANKIDVSHYDIEALDH 130
Query: 131 SV-VPVDFVDPAGYDSTDQ-QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+P+ + ++ ++ + I I+ L + Q + ++ A KGIGK HAKW P A V++
Sbjct: 131 EPNIPMPIPNDNKNNNIEKMENAIPILTLSKNQTIHMKLTATKGIGKMHAKWIP-ANVSY 189
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVF---DIDPNTGQVYVVDAEAYTYDDEVI 245
+ + +I IN ++ +S E K + + + ++D + D E ++ +
Sbjct: 190 IIDHKIIINNHEVDKMSKEHKLLIANNLNSDCYILKELDDDR------DVELRLSENMSV 243
Query: 246 KKAEA----MGKPG----LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
AE+ + + G +V+I E F F +ES G++ Q+V AIE+L+ KL
Sbjct: 244 VMAESCRDTLNELGYNKDIVKIIYDETKFHFKIESVGSMPPEQIVEMAIEILENKL 299
>gi|224061238|ref|XP_002300385.1| predicted protein [Populus trichocarpa]
gi|222847643|gb|EEE85190.1| predicted protein [Populus trichocarpa]
Length = 390
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 38/317 (11%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
S++ ++K+ L D +F++ DA++ANA RR++I+EVPT+AI+ V I N+SV+ D
Sbjct: 82 SFRENFRIKVIALDKDKMEFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVIQD 141
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSK 123
E +AHRLGLIP+ + + S + D E ++ L A+C+ Q V S+
Sbjct: 142 EVLAHRLGLIPIKVDPRLFEYLSAN------DTPNEKNTIVLKLHARCNRGQPRCSVYSQ 195
Query: 124 DLY-----------SSDHSVVPVDFVD-PAGYDSTDQQRG--------IIIVKLRRGQEL 163
+L S P + G DS + G II+ KL GQE+
Sbjct: 196 ELKWLPNGSEFAKESEKPDSKPSTYTSFSCGQDSLPEFAGNPISTVEDIILAKLGPGQEI 255
Query: 164 RLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI 223
L A A KG+GK HAKWSP T + PE+ L+E++ E+ + + P+ VFDI
Sbjct: 256 ELEAHAVKGMGKTHAKWSPVGTAWYRMFPEVV----LLENIKGEDAEELIRKCPSGVFDI 311
Query: 224 DPNTG----QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKAS 279
+ +TG + V D+ A T E I+ E K V ++ +D FIFT+ESTGA+
Sbjct: 312 E-DTGNAKKKAIVADSRACTLCRECIRGDEEWEK--RVALHRVKDHFIFTIESTGALPPE 368
Query: 280 QLVLNAIEVLKQKLDAV 296
L A+++L+ K + V
Sbjct: 369 VLFTEAVKILEAKCERV 385
>gi|388858416|emb|CCF48010.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Ustilago hordei]
Length = 401
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 158/308 (51%), Gaps = 28/308 (9%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V + L D +F+L DAS+ANA+RRV++AEVPT+AI+ V I N+S++ DE ++HRL
Sbjct: 98 VIVTRLSDVSCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHRL 157
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSS 128
GL+PL ++ + GD + +V F L+AKC + D LY
Sbjct: 158 GLVPL------AINPDKVLIRMPGDNADDSNTVVFSLKAKCERNPNAARGESDPDKLYIG 211
Query: 129 DHSVVPVDFV-DPAGYDSTD--------QQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
H+V V DP G D I+I KLR GQEL L KGIG+DHAK
Sbjct: 212 -HNVYSEQLVWDPKGDQDEDFADAPPKPVHAKILIAKLRPGQELDLELHCEKGIGRDHAK 270
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF--DIDPNTGQVYVVDAEA 237
+SP AT T+ P I L++ + E+ ++ P V + + + YV DA
Sbjct: 271 FSPVATATYRLLPHIQ----LLKPVEGEQVDKLLKCFPPGVIGAEGEGKNRKAYVKDARK 326
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ AE K V++ D F+F +ESTG I +L+ AI+ L+ K+ +R
Sbjct: 327 DTISREVLRHAEFEDK---VKLGRVRDHFLFELESTGIIPPEKLLPEAIKTLRGKIATLR 383
Query: 298 LSEDTVEA 305
S D +E
Sbjct: 384 KSLDHLET 391
>gi|325187132|emb|CCA21673.1| DNAdirected RNA polymerase I and III subunit RPAC1 p [Albugo
laibachii Nc14]
Length = 343
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 152/292 (52%), Gaps = 17/292 (5%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I+ L D +F+L D S+ANALRR++++EVPT+AI+ V I NSS++ DE +AHR
Sbjct: 42 QIQIKHLDDQEMEFDLIGVDPSIANALRRILLSEVPTMAIEHVYIWNNSSIIQDEVLAHR 101
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD-----QTLDVTSKDL 125
LGLIPL + F D +A D ++ F L C SD + + +
Sbjct: 102 LGLIPLLVDPREFQHFPEDEEAEATDEN----TIVFKLDVTCRSDPNEPENSSKASHSSV 157
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
YS D VP + I+I KLR GQ + L A RKGIG+DHAK+SP +T
Sbjct: 158 YSRDLEWVPQGNQEERFTSIRPVSEDILIAKLRPGQSIALEAHCRKGIGRDHAKFSPVST 217
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--QVYVVDAEAYTYDDE 243
++ P I E ++ +LE Q+ S KVFDI+ G V D+ T E
Sbjct: 218 ASYRLLPRIEFTEPVVGEEALELAQNKCVS---KVFDIEDIAGLPTAIVSDSRKCTMCRE 274
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
I+ A G +++ + D FIF++ES G + +L+ A+ VL +K A
Sbjct: 275 CIR---APGWDSKIQLGRQHDHFIFSIESAGMFQPQELLSEALTVLMEKCSA 323
>gi|443897408|dbj|GAC74749.1| RNA polymerase I and III, subunit RPA40/RPC40 [Pseudozyma
antarctica T-34]
Length = 404
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 154/310 (49%), Gaps = 32/310 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I L D +F+L DAS+ANA+RRV++AEVPT+AI+ V I N+S++ DE ++HR
Sbjct: 100 KLIITRLSDASCEFDLIGVDASIANAIRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 159
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD------ 124
LGL+PL + DA D + +V FHL+AKC ++ D
Sbjct: 160 LGLVPLAIHPDKVLMRQPGDDADDSN------TVVFHLKAKCERNRNAARGETDPDKLYI 213
Query: 125 ---LYSSDHSVVPV-----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
+YS P DF D D+ I+I KLR GQEL L KGIGKD
Sbjct: 214 GHNVYSGALEWDPKGGQEDDFADAPPRPVHDR---ILIAKLRPGQELDLELHCEKGIGKD 270
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI--DPNTGQVYVVD 234
HAK+SP AT T+ P I L++ + +V P V + + + +V+V D
Sbjct: 271 HAKFSPVATATYRLLPHIQ----LLQPVPAALVDKFVACFPPGVIGVSGEGDERKVFVQD 326
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
A T EV + E V++ D F+F +ESTG I +L+ AI L+ K+
Sbjct: 327 ARKDTISREVFRHDEFENT---VKLGRVRDHFLFDLESTGVIPPERLLPEAIRTLRAKIA 383
Query: 295 AVRLSEDTVE 304
+R D +E
Sbjct: 384 TLRKGLDHLE 393
>gi|320582291|gb|EFW96508.1| RNA polymerase III (C) subunit [Ogataea parapolymorpha DL-1]
Length = 335
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 156/307 (50%), Gaps = 21/307 (6%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D ++++ ++ I L A F+L D S+ANA RR+MIAEVP++A + V I N+SV
Sbjct: 32 DLENFKKNFQLNISYLTQRTANFDLVGLDTSIANAFRRIMIAEVPSVAAEYVYIFNNTSV 91
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
+ DE +AHR+GL+PL + M D +A + D + ++ L C +
Sbjct: 92 IQDEVLAHRIGLVPLKVDPDMLTWI--DPNAEEEDKFTDENTIVLSLDVACTKNPNAVPG 149
Query: 122 SKD---LYSSDHSVVPVDFVDPAGYDSTDQQR--------GIIIVKLRRGQELRLRAIAR 170
+ D LY + + +P G T I+I KLR QE+ LR
Sbjct: 150 NNDPENLYRNSNVYARDLKFEPNGRQVTQFANCPVVPCDPDILIAKLRPNQEISLRVHCV 209
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
GIG DHAK+SP +T ++ P I D++E ++ ++ + + P+ V ID N G
Sbjct: 210 LGIGADHAKFSPVSTASYRLLPTI----DILEPITGDDAVKFQKCFPSGVIGIDSN-GAA 264
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
YV DA T EV++ E GK V++ K D FIF VESTGA+ ++ +I VLK
Sbjct: 265 YVADARKDTVSREVLRHKEFEGK---VKLGRKRDHFIFNVESTGAMPPEEIFYKSIRVLK 321
Query: 291 QKLDAVR 297
K + +R
Sbjct: 322 TKAEYLR 328
>gi|126465715|ref|YP_001040824.1| DNA-directed RNA polymerase subunit D [Staphylothermus marinus F1]
gi|126014538|gb|ABN69916.1| DNA-directed RNA polymerase, subunit D [Staphylothermus marinus F1]
Length = 280
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 149/274 (54%), Gaps = 22/274 (8%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+ ++D + N++RR +IAEVPT+AID V +NSSV DE+IAHRLGLIPLTSE A+
Sbjct: 14 RLYIKDIPLHVLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAAL 73
Query: 83 -SMRFSRDC-DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDP 140
+ +C +A D E C V+ L K + + + S DL +SD V PV
Sbjct: 74 DKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSDPDVKPV----- 128
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
YD+ I I+ L + QE+RL A AR G GK+HAKWSP + Y +I+I+E
Sbjct: 129 --YDN------IPIIVLGKNQEIRLEAYARLGRGKEHAKWSPVSVAAHKYIADIYIDE-- 178
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIY 260
+ E + +E P + + G++ V + +D + + E + +
Sbjct: 179 -KKCLGENCKKCIEVCPRNILSFE--NGKIIVNTNK--IFDCSLCRICEEYCPTDAIRVG 233
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+E+ +I T+ESTG++ ++++ A+++L+ K+D
Sbjct: 234 WRENEYILTIESTGSLPPKRILIEAVKILENKID 267
>gi|331225845|ref|XP_003325593.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304583|gb|EFP81174.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 359
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 160/313 (51%), Gaps = 30/313 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D ++++ K+KI L +F+L DAS+ANALRR+M+AEVPT+AI+ V + N+S+
Sbjct: 53 DIQTFKKNLKIKICRLSSTSMEFDLIGIDASIANALRRIMLAEVPTVAIEDVFVWNNTSL 112
Query: 62 LNDEFIAHRLGLIPL-TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
++DE +A RLGL+PL R + MR +G + ++ F L C + +
Sbjct: 113 VHDEVLAQRLGLVPLKIDPRLIDMR--------TDEGATDLNTIVFKLVVNCRRNPHVPK 164
Query: 121 TSKD---LYSSDHSVVPVDFVDPAGYDSTDQ---------QRGIIIVKLRRGQELRLRAI 168
T KD LY + +P G D D Q I++VK+R GQE+R
Sbjct: 165 TEKDPLKLYQNSLVTTEALEWEPKG-DQVDMFGSEPPRPVQNDIVLVKMRPGQEIRAEMH 223
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID-PNT 227
KGI KDHAK+SP AT ++ P I I+E + E L+ + + SP + ++ P
Sbjct: 224 CVKGIAKDHAKFSPVATASYRLLPHIVIHEPIPEPDCLKFQSCF---SPGVIEIVNGPKG 280
Query: 228 GQV-YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
G+ V + + EV++ E GK V + D FIF VESTG ++ L A
Sbjct: 281 GKTCKVKNPRNDSVSREVLRHPEFEGK---VTLGRVRDHFIFNVESTGVYSPQEIPLEAC 337
Query: 287 EVLKQKLDAVRLS 299
EVL K+ VR S
Sbjct: 338 EVLLLKIRTVRAS 350
>gi|68482204|ref|XP_714986.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
gi|68482331|ref|XP_714923.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436522|gb|EAK95883.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436587|gb|EAK95947.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
Length = 369
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 152/299 (50%), Gaps = 23/299 (7%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI L + F+L D S+ANA RR+MIAEVP++A + V + +N+SV+ DE +A R
Sbjct: 76 EIKITNLSERTGTFDLIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQR 135
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYS 127
+GLIP + D D E ++ L C + S D LY
Sbjct: 136 IGLIPWKIDPDKLTWVDETVDI--NDRFTEDNTIVLSLDVACSKNPHAPKNSTDPRELYK 193
Query: 128 SDHSVVPVDF-VDPAGYDSTDQQ--------RGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ H V DF +P G + I++ KLR GQE+ LRA GIG DHA
Sbjct: 194 NSH-VYAKDFKFEPHGNQEEKFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHA 252
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
K+SP AT ++ P I D+ E ++ E + + + P V ID N G+ YV DA
Sbjct: 253 KFSPVATASYRLLPVI----DIKEPITGELAKKFQKCFPPGVIGIDAN-GKAYVKDARKD 307
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ E GK V++ + D FIF VESTGA+ +++ ++ +LK K + +R
Sbjct: 308 TVSREVLRHPEFDGK---VQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAEYLR 363
>gi|238882305|gb|EEQ45943.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
albicans WO-1]
Length = 336
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 152/299 (50%), Gaps = 23/299 (7%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI L + F+L D S+ANA RR+MIAEVP++A + V + +N+SV+ DE +A R
Sbjct: 43 EIKITNLSERTGTFDLIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQR 102
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYS 127
+GLIP + D D E ++ L C + S D LY
Sbjct: 103 IGLIPWKIDPDKLTWVDETVDI--NDRFTEDNTIVLSLDVACSKNPHAPKNSTDPRELYK 160
Query: 128 SDHSVVPVDF-VDPAGYDSTDQQ--------RGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ H V DF +P G + I++ KLR GQE+ LRA GIG DHA
Sbjct: 161 NSH-VYAKDFKFEPHGNQEEKFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHA 219
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
K+SP AT ++ P I D+ E ++ E + + + P V ID N G+ YV DA
Sbjct: 220 KFSPVATASYRLLPVI----DIKEPITGELAKKFQKCFPPGVIGIDAN-GKAYVKDARKD 274
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ E GK V++ + D FIF VESTGA+ +++ ++ +LK K + +R
Sbjct: 275 TVSREVLRHPEFDGK---VQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAEYLR 330
>gi|390602421|gb|EIN11814.1| hypothetical protein PUNSTDRAFT_61925 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 301
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 152/293 (51%), Gaps = 55/293 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P V+IR+LK D F L + D + AN+LRRVM+A++PT+AIDLVEIE N++VL+DEF+AH
Sbjct: 9 PTVRIRDLKKDRVNFVLENVDLAFANSLRRVMMADIPTVAIDLVEIETNTTVLSDEFLAH 68
Query: 70 RLGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDLYS 127
RLG++PL S ++R+SR C C +CS+ L C D TL+VTS L
Sbjct: 69 RLGMVPLVSTNCDEAIRYSR---DCSCMSSCSYCSIVLQLHVSCTEDDTTLNVTSDHL-- 123
Query: 128 SDHSVVPV-----------------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIAR 170
VVP +F P G + +++ KLR+GQEL++R IA+
Sbjct: 124 ---DVVPASDDDQGDPGEELTKRVENFGSPVG-KGVEGVDPVLLCKLRKGQELKVRCIAK 179
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
KGI K+HAK+SP A V+F Y+P L W E P + +
Sbjct: 180 KGISKEHAKFSPCAAVSFEYDP----------WNKLRHTSYWYEKDPRAEWPV------- 222
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
+E + ++E + E + AK + F F VE+ G++ ++V+
Sbjct: 223 ----SEINSKEEEPPRDDEPF------DYNAKPNKFYFEVETDGSLGPQEVVM 265
>gi|410075079|ref|XP_003955122.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
gi|372461704|emb|CCF55987.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
Length = 334
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 147/297 (49%), Gaps = 21/297 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
VKI + + A F+L D S+ANA RR+MI+EVP +A++ V N+SV+ DE +AHR+
Sbjct: 42 VKISSMNEREANFDLVHIDTSVANAFRRIMISEVPAVAVEYVYFLNNTSVIQDEVLAHRI 101
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSD 129
GL+PL + M D D + + ++ L KC + D D T ++ +
Sbjct: 102 GLVPLKVDPDMLTWI--DSSLPDDEKFTDENTIVLTLNVKCTRNPDAPRDCTDPNILYRN 159
Query: 130 HSVVPVDF-VDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAKW 180
+V D +P G I++ KLR GQE+ LRA GIG DHAK+
Sbjct: 160 SNVYASDLKFEPQGKQVETFANNAVVPCDPKILLAKLRPGQEISLRAHCILGIGSDHAKF 219
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP AT ++ P I I E ++ E + + + P V I N G YV D+ T
Sbjct: 220 SPVATASYRLLPHIEI----TEPITGESAKRFQKCFPAGVIGIKEN-GDAYVQDSRKDTV 274
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV + E GK L I D F+F VESTGA+ ++ ++ +LK K + ++
Sbjct: 275 SREVYRHEEFNGKVKLGRI---RDHFVFNVESTGAMTPEEIFFKSVRILKNKAEYLK 328
>gi|91772121|ref|YP_564813.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
gi|91711136|gb|ABE51063.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
Length = 267
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 144/288 (50%), Gaps = 39/288 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I EL D AKF L +T A+ AN +RR M+A+VPT+AID V I N+SVL DE +A R
Sbjct: 2 EIDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDLYSSD 129
LGLIPLT+ + +D CDG G C C+V L + S QT+ V S D+ SSD
Sbjct: 62 LGLIPLTT--SFDDFVPQDKCTCDGAG-CPACTVSLTLSVETDESGQTI-VHSGDIVSSD 117
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+V P D + I I+ LR GQ++ L AIA G G HAKW +
Sbjct: 118 PNVQPAD-------------KNIPIIDLRVGQKVVLEAIAHMGYGNKHAKWQAGVACGYK 164
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA- 248
P + + + S P + + ++D A D++++K +
Sbjct: 165 IMPIVTFE-------GCDGCGICINSCPRNI---------IQLIDGSAMVADEDLLKCSL 208
Query: 249 ----EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ + + A E SFIFT+ES G+ A QL+LNA+ +K K
Sbjct: 209 CRLCQDSCDINAITVSADEKSFIFTMESDGSYTAQQLILNAVNTIKGK 256
>gi|320101538|ref|YP_004177130.1| DNA-directed RNA polymerase subunit D [Desulfurococcus mucosus DSM
2162]
gi|319753890|gb|ADV65648.1| DNA-directed RNA polymerase, subunit D [Desulfurococcus mucosus DSM
2162]
Length = 280
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 137/275 (49%), Gaps = 22/275 (8%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
K L+ + N+LRR +I+EVPT+A+D V I NSSV DE+IAHRLGLIPL S+ A+
Sbjct: 14 KLHLKGIPLHVVNSLRRTIISEVPTMAVDYVAITENSSVFYDEYIAHRLGLIPLKSDEAL 73
Query: 83 -SMRFSRDCDACDGDGQ-CEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDP 140
+ +C G + C L AK D L + S+ L SSD V PV P
Sbjct: 74 HKYKPPEECAEAGEKGVFSQDCFATLRLEAKGPEDGVLTIYSEMLESSDPDVTPVYGKVP 133
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
+V+L R Q +RL A AR G GK+HAKWSP + T Y P I +N +
Sbjct: 134 -------------VVRLTRNQSIRLEAYARLGRGKEHAKWSPVSVATHKYIPVITVNAEK 180
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIY 260
+ + P VF+ + +V E + + E G V++
Sbjct: 181 CQGTKCSR---CANTCPKGVFEASGDAIRV----KEDRVLECTFCRLCENTCPAGAVKVS 233
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
+++ +I ++E TGA+ A ++L A+ +L +KLDA
Sbjct: 234 WRDNEYILSLELTGALSARNVLLEAVNILSRKLDA 268
>gi|241951478|ref|XP_002418461.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
gi|223641800|emb|CAX43762.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
Length = 336
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 152/299 (50%), Gaps = 23/299 (7%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI L + F+L D S+ANA RR+MIAEVP++A + V + +N+SV+ DE +A R
Sbjct: 43 EIKITNLSERTGTFDLIHIDTSIANAFRRIMIAEVPSVAAETVYMFMNTSVIQDEVLAQR 102
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYS 127
+GLIP + D D E ++ L C + S D LY
Sbjct: 103 IGLIPWKIDPDKLTWVDETVDI--NDRFTEDNTIVLSLDVACSKNPHAPKNSTDPRELYK 160
Query: 128 SDHSVVPVDF-VDPAGYDSTDQQ--------RGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ H V DF +P G + I++ KLR GQE+ LRA GIG DHA
Sbjct: 161 NSH-VYAKDFKFEPHGNQEEKFKDTPVVPCDPDILLAKLRPGQEISLRAHCVLGIGSDHA 219
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
K+SP AT ++ P I D+ + ++ E + + + P V ID N G+ YV DA
Sbjct: 220 KFSPVATASYRLLPVI----DIKQPITGELAKKFQKCFPPGVIGIDTN-GKAYVKDARKD 274
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ E GK V++ + D FIF VESTGA+ +++ ++ +LK K + +R
Sbjct: 275 TVSREVLRHPEFDGK---VQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAEYLR 330
>gi|146164033|ref|XP_001012875.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila]
gi|146145882|gb|EAR92630.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila SB210]
Length = 336
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 157/299 (52%), Gaps = 34/299 (11%)
Query: 18 KDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 77
K+ +F+L DA +ANALRR+MIAEVPT+AI V I N+S++ DE +AHRLGLIP+
Sbjct: 54 KNKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIPIY 113
Query: 78 SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--------HSDQTLDVTSKDLYSSD 129
++ + F + + D E S++F L+ KC +S+ L+ + + Y +
Sbjct: 114 ADPRL---FE---EKQEEDEYNEKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLEN 167
Query: 130 HSVVPVDF--VDPAGYDSTDQQR-------GIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
V DF V + ++ II+ KLR QE+ I +KGIGK HAKW
Sbjct: 168 AIVYSGDFKWVSQGEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQKGIGKTHAKW 227
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP T + PEI+IN D+ + + E K E P KV+D+ N + V + A T
Sbjct: 228 SPVCTAYYRLMPEININSDITGAKAQELK----ERCPLKVYDVQNN--KAIVSNERACTM 281
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
E I++ E +E+ K++ FI +S G + ++V AI++LKQK + L+
Sbjct: 282 CRECIREDEEFN--SKIELAKKKEHFI---QSVGIYEPHEIVKEAIQILKQKASSFMLN 335
>gi|19074310|ref|NP_585816.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|19068952|emb|CAD25420.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|449329459|gb|AGE95731.1| DNA-directed RNA polymerase II third chain [Encephalitozoon
cuniculi]
Length = 240
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 109/181 (60%), Gaps = 21/181 (11%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ + EL ++ +F L +T ANALRR++I+EVPTIAID+VEIE N++VL DE +AHRL
Sbjct: 4 LTVEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRL 63
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL-DVTSKDLYSSDH 130
GLIP+ S+R + + + C G C CSV F + H+D TL V+++D+ +
Sbjct: 64 GLIPIYSKRELKYK-----EECSCSGFCSECSVVFEIDV-VHTDDTLRTVSTRDIVCDEE 117
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V+ + G +I KL R Q L+ R I RKG+GK HAKWSP + ++F Y
Sbjct: 118 DVI--------------IKSGPVITKLARDQGLKARCIGRKGVGKTHAKWSPVSAISFEY 163
Query: 191 E 191
+
Sbjct: 164 D 164
>gi|19113623|ref|NP_596831.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe 972h-]
gi|13124507|sp|O94616.1|RPAC1_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=DNA-directed RNA polymerases I and III 40 kDa
polypeptide; Short=AC40; AltName: Full=RPC39
gi|5531859|gb|AAD44503.1|AF082512_1 RNA polymerase subunit Rpc40 [Schizosaccharomyces pombe]
gi|4490662|emb|CAB38687.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe]
gi|4760696|dbj|BAA77385.1| RPA42 [Schizosaccharomyces pombe]
Length = 348
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 162/325 (49%), Gaps = 42/325 (12%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+++ KV I L + FE+ DAS+ANA RR++IAE+PT+A + V I N+S++ DE
Sbjct: 42 FKKNLKVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDE 101
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD- 124
++HR+GL+P++++ M F + ++ +V F L KC ++ KD
Sbjct: 102 VLSHRIGLVPISADPDMFKWFQHPLPGQEA-THTDYDTVVFSLNKKCEFNKNAATDEKDP 160
Query: 125 --------LYSSD------------HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELR 164
+YS D + P+ V+P I++ KLR GQE+
Sbjct: 161 KRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNP----------DIVVAKLRPGQEID 210
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L A A GIG+DHAK+SP AT ++ P IHI + + E+ + + P V +++
Sbjct: 211 LEAHAILGIGQDHAKFSPVATASYRLLPTIHI----LSPIEGEDAVKFQKCFPKGVIELE 266
Query: 225 --PN-TGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
P+ Q V D T E ++ E K V++ D ++F+VESTG +K L
Sbjct: 267 EGPDGKKQARVADVRKDTVSRECLRHPEFADK---VQLGRVRDHYLFSVESTGIMKPDVL 323
Query: 282 VLNAIEVLKQKLDAVRLSEDTVEAD 306
+ +I VLK K AV+ S + +D
Sbjct: 324 FIKSIAVLKSKCLAVKSSLQNISSD 348
>gi|313232341|emb|CBY09450.1| unnamed protein product [Oikopleura dioica]
Length = 164
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/166 (47%), Positives = 103/166 (62%), Gaps = 6/166 (3%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I E+KD+ KF + +TD S+ANALRRV +AEVP +AID + IE N++VL DE
Sbjct: 3 YANQPIVRIEEIKDENCKFSIENTDLSVANALRRVWLAEVPVLAIDWIRIEENTTVLIDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
F+AHRL LIPL E + M++ RDC D C C+VEF L C +D T VT+ D
Sbjct: 63 FLAHRLALIPLHCEEVVDKMQYIRDCSC---DNFCNDCTVEFTLDVTCDTDATRTVTTAD 119
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIAR 170
L S + SV P Y+ Q I+IVKLR+GQ L+L A A+
Sbjct: 120 LISGNPSVQPALGKSDDDYNRDSNQ--ILIVKLRKGQTLKLTAHAK 163
>gi|366988647|ref|XP_003674091.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
gi|342299954|emb|CCC67710.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
Length = 335
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 153/298 (51%), Gaps = 20/298 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+I L + A F+L + D S+ANA RR+MI+EVP +A + V N+SV+ DE +AHR
Sbjct: 41 KVEISSLNEREANFDLINIDTSIANAFRRIMISEVPAVAAEYVYFLNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSS 128
+GLIPL + + D + D + + ++ L KC + D D T +
Sbjct: 101 IGLIPLKVDPDLLTWV--DNELPDEEKFNDTNTIVLTLNVKCTRNPDAPKDATDPKILYR 158
Query: 129 DHSVVPVDF-VDP--------AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ SV D +P AG + I++ KLR GQE+ LRA G G DHAK
Sbjct: 159 NSSVYASDLKFEPQGKQIETFAGTPVVPCDQDILLAKLRPGQEISLRAHCILGTGGDHAK 218
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP +T ++ P I+I + + L+ + ++ ++ V ID +G+ +V DA T
Sbjct: 219 FSPVSTASYRLLPHINITKPIKGELAEKFQKCFLPG----VIGIDNASGEAFVKDARKDT 274
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E K L I D FIF VESTGA+ ++ ++ +LK K + ++
Sbjct: 275 VSREVLRHEEFNDKVKLGRI---RDHFIFNVESTGAMTPEEIFFKSVRILKNKAEYLK 329
>gi|401826632|ref|XP_003887409.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
gi|395459927|gb|AFM98428.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
Length = 240
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 125/216 (57%), Gaps = 25/216 (11%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ + EL + KF L +T ANALRR++I+EVPTIAID+VEIE N++VL DE +AHRL
Sbjct: 4 LTVEELTAGHIKFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRL 63
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD-VTSKDLYSSDH 130
GL+P+ S+R S+++ +C G C CSV F + H++ TL V+++D+ +
Sbjct: 64 GLVPIYSKR--SLKYKEECGC---SGFCSECSVVFEIDV-VHTEDTLRAVSTRDIICDEE 117
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VV + G II KL R Q L+ R I RKGIGK H+KWSP + ++F Y
Sbjct: 118 DVV--------------IKSGPIITKLARDQGLKARCIGRKGIGKTHSKWSPVSAISFEY 163
Query: 191 EPE-IHINEDLMESLSLEEKQSWV---ESSPTKVFD 222
+ + I D S+EE+ V E++P + D
Sbjct: 164 DKDNIRRETDYWFEESIEEEWPGVKQGEANPMQKVD 199
>gi|390348474|ref|XP_795508.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Strongylocentrotus purpuratus]
Length = 350
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 170/316 (53%), Gaps = 43/316 (13%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D S +F K + + L +F++ D ++ANA RR+++AEVPT+AI+ V I N
Sbjct: 35 DSWSMDKFTKNFRIDVISLTHSELEFDMVGVDPAVANAFRRILLAEVPTMAIEKVSIFNN 94
Query: 59 SSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQ 116
+S++ DE +AHRLGLIP+ ++ + + + + D G E ++EF L+ KC + +
Sbjct: 95 TSIIQDEILAHRLGLIPIKADPRI-FEYREEVNTGDETGTGED-TIEFQLKVKCTKNPNA 152
Query: 117 TLDVTSKD-LY-----SSDH-SVVPVDFVD----PAGYDSTDQQRGIIIVKLRRGQELRL 165
+ D T D LY +++H +P++ + P + + + I+I KLR GQE+ L
Sbjct: 153 SKDATDPDELYKNAKVTTEHFKWIPLENQEETYGPKAFAPVN--KDILIAKLRPGQEIDL 210
Query: 166 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDP 225
+ KGIGKDHAK+SP AT ++ PEI + ED++ + + +Q + + V D++
Sbjct: 211 KMHCVKGIGKDHAKFSPVATASYRLMPEIILTEDIVGERAKKLQQCF----SSGVIDVEK 266
Query: 226 NTGQVYVVDA---------EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAI 276
G V A E +++DD +K V++ D FIF+VESTGA+
Sbjct: 267 RNGVPVAVVACPRRDTCGREVFSHDD--LKDC--------VKLNRIRDHFIFSVESTGAL 316
Query: 277 KASQLVLNAIEVLKQK 292
+ LV AI +LK K
Sbjct: 317 RPEVLVSEAINILKSK 332
>gi|66812176|ref|XP_640267.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74855077|sp|Q54SN4.1|RPAC1_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit rpac1;
Short=RNA polymerases I and III subunit AC1
gi|60468282|gb|EAL66291.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 345
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 151/280 (53%), Gaps = 23/280 (8%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAM 82
FE+ DA +ANALRR+MI+E+PT+AI+ V I N+S+L DE +AHRLG+IP+ + R
Sbjct: 73 FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132
Query: 83 SMRF-SRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSV-VPVDFVDP 140
+ + +++ A D ++ F L+ KC D + S H + VP +
Sbjct: 133 NFKLPNKEYTAED--------TLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQEE 184
Query: 141 AGYDSTDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
+ D+ R I I+KLR GQ + ++ K IG++H KWSP T ++ +P I +
Sbjct: 185 MFPNEEDRPRPMEDDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSPVCTASYRLQPVISV 244
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL 256
+ +S+ ++ +E P KVFDI+ ++GQV T E I+ E
Sbjct: 245 D----KSIKGDKANQLLEKCPKKVFDIE-DSGQVVAARPLDCTMCRECIRDPEFEQN--- 296
Query: 257 VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
V+I D FIF++ESTGA+K+ ++ AI++ +K + V
Sbjct: 297 VKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIV 336
>gi|198427484|ref|XP_002120101.1| PREDICTED: similar to RNA polymerase 1-1 [Ciona intestinalis]
Length = 345
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 162/310 (52%), Gaps = 36/310 (11%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D +Q+F + + EL D +F++ DA++ANA RR++IAEVPT+AI+ V I N
Sbjct: 35 DAWDFQKFADNFCINVIELGPDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNN 94
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
++V+ DE +AHRLGLIPLT++ + R D D D ++EF L KC + +
Sbjct: 95 TTVIQDEVLAHRLGLIPLTADAKLFEYRQGDDADGTPED------TLEFELNIKCTKNLS 148
Query: 118 -------LDVTSK--DLYSSDHSVVPVD------FVDPAGYDSTDQQRGIIIVKLRRGQE 162
LDV K +YS D +P+ V P YD I++ KLR G
Sbjct: 149 APKDTTDLDVLYKHHKVYSKDIKWIPLGNQKDLLTVKPV-YDD------ILVAKLRPGHI 201
Query: 163 LRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFD 222
L ++ A KG+G+DHAK+SP AT ++ P+I + + ++ S E+ Q +V+
Sbjct: 202 LDVKLHAVKGVGQDHAKFSPVATASYRLLPQIRLLDQILNS-DAEDLQRCFAPGVIEVYR 260
Query: 223 IDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
+ VVDA T EV++ + VE+ D FI+++ES+ AI ++L+
Sbjct: 261 NKNGDQEARVVDARKDTCSREVLRHPHLKDR---VELSKVRDHFIYSIESSVAITPNELM 317
Query: 283 LNAIEVLKQK 292
AI+++ K
Sbjct: 318 CRAIKIMMGK 327
>gi|254580391|ref|XP_002496181.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
gi|238939072|emb|CAR27248.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
Length = 335
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 151/299 (50%), Gaps = 24/299 (8%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+I L + A F+L D S+ANA RR+MI+EVP++A + V N+SV+ DE +AHR+
Sbjct: 42 VRIGSLTEREANFDLVHVDTSIANAFRRIMISEVPSVATEYVYFLNNTSVIQDEVLAHRI 101
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVT-SKDLYSS 128
GL+PL + M D + + + ++ L KC + D D T K LY +
Sbjct: 102 GLVPLKVDPDMLTWV--DHSLPEEEKFTDENTIVMTLNVKCTRNPDAPKDCTDPKILYRN 159
Query: 129 DHSVVPVDFVDPAGYD----------STDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
H +P G TD I++ KLR GQE+ LRA G+G DHA
Sbjct: 160 SHIYARDLKFEPQGSQVETFAKCPVIPTDPD--ILLAKLRPGQEISLRAHCILGVGSDHA 217
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
K+SP AT ++ P I D+ E + E Q + + P V I+ +T + YV DA
Sbjct: 218 KFSPVATASYRLLPHI----DIREPIKGELAQKFQKCFPPGVIGINESTDEAYVQDARKD 273
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ E K V++ D F+F VESTGA+ ++ ++ VLK K + ++
Sbjct: 274 TVSREVLRHEEFSNK---VKLGRVRDHFVFNVESTGAMTPEEIFFKSVRVLKNKAEYLK 329
>gi|1914859|emb|CAA71570.1| homologous to 40kD subunit of RNA-polymerase I and III [Cricetulus
griseus]
Length = 347
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 162/325 (49%), Gaps = 42/325 (12%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+++ KV I L + FE+ DAS+ANA RR++IAE+PT+A + V I N+S++ DE
Sbjct: 41 FKKNLKVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDE 100
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD- 124
++HR+GL+P++++ M F + ++ +V F L KC ++ KD
Sbjct: 101 VLSHRIGLVPISADPDMFKWFQHPLPGQEA-THTDYDTVVFSLNKKCEFNKNAATDEKDP 159
Query: 125 --------LYSSD------------HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELR 164
+YS D + P+ V+P I++ KLR GQE+
Sbjct: 160 KRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNP----------DIVVAKLRPGQEID 209
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L A A GIG+DHAK+SP AT ++ P IHI + + E+ + + P V +++
Sbjct: 210 LEAHAILGIGQDHAKFSPVATASYRLLPTIHI----LSPIEGEDAVKFQKCFPKGVIELE 265
Query: 225 --PN-TGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
P+ Q V D T E ++ E K V++ D ++F+VESTG +K L
Sbjct: 266 EGPDGKKQARVADVRKDTVSRECLRHPEFADK---VQLGRVRDHYLFSVESTGIMKPDVL 322
Query: 282 VLNAIEVLKQKLDAVRLSEDTVEAD 306
+ +I VLK K AV+ S + +D
Sbjct: 323 FIKSIAVLKSKCLAVKSSLQNIFSD 347
>gi|147919298|ref|YP_686966.1| DNA-directed RNA polymerase subunit D [Methanocella arvoryzae
MRE50]
gi|110622362|emb|CAJ37640.1| DNA-directed RNA polymerase, subunit D [Methanocella arvoryzae
MRE50]
Length = 262
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 150/290 (51%), Gaps = 34/290 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++I ELKD AKF L D + AN LRR MIA+VP +AID V+I N+SVL DE +A R
Sbjct: 2 KLEIIELKDRKAKFVLTDVTPAFANGLRRAMIADVPKMAIDYVDIYDNTSVLFDEMLALR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL + M + +C+ C G G C C V + A + V S D+ SSD
Sbjct: 62 LGLIPLKTNLDM-YQLQSECE-CKGAG-CSLCQVTLSVSA----EGPCVVHSSDMKSSDP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VPVD I I++L++GQ++ AR G K+HAK+ P +
Sbjct: 115 ETVPVD-------------NNIPIIELKQGQKVVASGTARLGFTKEHAKYQPVCAAGYKN 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P + +++ ++ ++ ++ P VF I+ N ++ V D Y + K
Sbjct: 162 VPIVTVSD------KCDQCKACIDECPRGVFKIEKN--KLVVTD----QYKCSMCKLCVD 209
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
+ G +++ A + +FIFTVE+ G+ A +++ A + +K + A +L E
Sbjct: 210 VCDAGAIDVSADKKAFIFTVETDGSYSAQEIITRAAKSMKDR--AAKLGE 257
>gi|303389576|ref|XP_003073020.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302164|gb|ADM11660.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
Length = 240
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 104/180 (57%), Gaps = 19/180 (10%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ I EL + +F L +T ANALRR++I+EVPTIAID+VEIE N++VL DE +AHRL
Sbjct: 4 LSIEELTPERIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRL 63
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GLIP+ S+R + + D C G C CSV F + D V+++D+ +
Sbjct: 64 GLIPVYSKRELKYK-----DECSCSGFCSECSVVFEIDVVHTEDALRVVSTRDIICDEED 118
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
VV + G II KL R Q L+ R I RKGIG+ HAKWSP + ++F Y+
Sbjct: 119 VV--------------VKSGPIITKLARDQGLKARCIGRKGIGRTHAKWSPVSAISFEYD 164
>gi|149247366|ref|XP_001528095.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146448049|gb|EDK42437.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 336
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 153/298 (51%), Gaps = 21/298 (7%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI + + A F+L D S+ANA RR+MIAEVP++A + V + +N+SV+ DE +AHR
Sbjct: 43 EIKITNIAERSATFDLIHVDTSIANAFRRIMIAEVPSVAAETVYLYMNTSVIQDEVLAHR 102
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYS 127
+GLIPL + + D + + E ++ L C + S K++Y
Sbjct: 103 IGLIPLKVDPDSLTWVDKKLD--ESERYTEDNTIVLTLDVACSKNLQAPKNSTDPKEMYK 160
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ H +P G + I++ KLR GQE+ +R G+G DHAK
Sbjct: 161 NSHVYARDLKFEPQGSQLEKYKDSPVVPCDPDILLAKLRPGQEISMRVHCILGLGCDHAK 220
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP AT ++ P I I E + L+ + ++ + P V I + G+ YV DA T
Sbjct: 221 FSPVATASYRLLPVIDIKEPITGDLARKFQKCF----PPGVIGIK-DDGEAYVEDARKDT 275
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E GK V++ + D FIF VESTGA+ ++ L +I VLK K + +R
Sbjct: 276 VSREVLRHPEFEGK---VKLGRQRDYFIFNVESTGAMPPCEIFLKSIRVLKSKAEYLR 330
>gi|50285441|ref|XP_445149.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524452|emb|CAG58049.1| unnamed protein product [Candida glabrata]
Length = 334
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 154/306 (50%), Gaps = 51/306 (16%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
F++ D S+ANA RR+MIAEVP +A + V I+ N+SV+ DE +AHR+GL+PL +
Sbjct: 53 NFDMIGIDTSLANAFRRIMIAEVPAVAPEYVYIQNNTSVIQDEVLAHRIGLVPLKVDPEK 112
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFH--------LRAKCH---------SDQTL-----DV 120
R D D D ++EFH L KC +D T+ V
Sbjct: 113 LERL----DTSDPD------NLEFHDKNTIVMTLNVKCTRNPDAPKDCTDPTILYNNAHV 162
Query: 121 TSKDLYSSDHSVVPVDFVD----PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
++DL HS F D P D I++ KLR GQE+ L G GKD
Sbjct: 163 YARDLKFEPHSSQVETFADCPVVPCDPD-------ILLAKLRPGQEISLSTHCILGEGKD 215
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAK+SP AT ++ P I I +E ++ + + + P V I+ N G+ YV+D
Sbjct: 216 HAKFSPVATASYRLLPHIEI----LEPITGDSAKRFQACFPKGVIGINEN-GEAYVLDPR 270
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
T EV++ E GK V++ D F+F VESTGA++ +VL +I++LK+K + +
Sbjct: 271 KDTVSREVLRHEEFEGK---VKLGRVRDHFVFNVESTGAMQPEDIVLKSIDILKKKAEYL 327
Query: 297 RLSEDT 302
+ + T
Sbjct: 328 KKCQIT 333
>gi|240279628|gb|EER43133.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
gi|325092757|gb|EGC46067.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 380
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 157/322 (48%), Gaps = 46/322 (14%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SE 79
A F L DA++ANA RR+MIAE+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE
Sbjct: 64 ASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSE 123
Query: 80 RAMSMRFSRDCDACDGDGQCE---FCSVEFHLRAKCHSDQTLDVTSKD---------LYS 127
+R+ R D E + +V HL +C ++ D +Y+
Sbjct: 124 GINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYA 183
Query: 128 SDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
D + PV F +P G + I++ KLR GQ++ + KGIG DHAK+SP
Sbjct: 184 KDITFHPVGRQETYFQEPDGVIRSANP-DILLAKLRPGQKIDIEMHCVKGIGADHAKFSP 242
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID---------PNTG----- 228
AT ++ P+I I ++ + +L+ + P V ID P +G
Sbjct: 243 VATASYRLLPDIKIIRPILGNDALK----FARCFPKGVIGIDSVSAEEASRPGSGYEGHE 298
Query: 229 ---QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNA 285
+V VVD T E ++ E GK L I D FIF VESTG ++ L + +
Sbjct: 299 GEKKVVVVDPFKDTMSRECLRHDEFQGKVKLGRI---RDHFIFNVESTGQFRSDVLFIES 355
Query: 286 IEVLKQKLDAVRLSEDTVEADD 307
++VL KL RL D + D
Sbjct: 356 VKVL--KLKCRRLKRDLAKLAD 375
>gi|401623159|gb|EJS41266.1| rpc40p [Saccharomyces arboricola H-6]
Length = 335
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 151/298 (50%), Gaps = 20/298 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I L A F+L D S+ANA RR+MI+EVP++A + V N+SV+ DE +AHR
Sbjct: 41 EVNISSLDAREANFDLMKIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYS 127
+GL+PL + M D + D + + +V L KC + S D LY+
Sbjct: 101 IGLVPLKVDPDMLTWV--DSNLPDDEKFTDENTVVLSLNVKCTRNPDAPKGSTDPRELYN 158
Query: 128 SDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ H +P G ST I++ KLR GQE+ L+A GIG DHAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFANCPVVPADPDILLAKLRPGQEILLKAHCILGIGGDHAK 218
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP +T ++ P+I+I ++ + E + + + P V ID N+ + YV DA T
Sbjct: 219 FSPVSTASYRLLPQINI----LKPIKGEAAKRFQKCFPPGVIGIDENSDEAYVEDARKDT 274
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E K V++ + FIF VES GA+ ++ ++ +LK K + ++
Sbjct: 275 VSREVLRYEEFADK---VKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 329
>gi|282164928|ref|YP_003357313.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
gi|282157242|dbj|BAI62330.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
Length = 262
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 149/282 (52%), Gaps = 32/282 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++I EL D AKF L + + ANA+RR M+A++P +AID V+I N+SV+ DE +AHR
Sbjct: 2 KLEILELGDRKAKFVLSEVTPAFANAVRRAMLADIPKMAIDYVDIYDNTSVMFDEMLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
+GLIP+ + M + +CD C G+G C C V F L A + V S+D+ SSD
Sbjct: 62 MGLIPIKTNLDM-YKLREECD-CKGEG-CALCQVSFTLSA----EGPCMVHSRDMKSSDP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VP D + I++L+ Q++ L A+AR G GK+H+K+ P + Y
Sbjct: 115 DTVPAD-------------DNVPIIELKERQKVVLTAVARLGRGKEHSKFQPVCPPGYKY 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P I I++ + + VE P VF +D N +V V + + +E ++ +
Sbjct: 162 VPIIEISD------KCDSCKQCVEQCPRGVFAVDKN--KVVVDNPYNCSMCEECLEACDL 213
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+++ +FIF VE+ G+ A +++ A+E ++ +
Sbjct: 214 KA----IKLSIDNTAFIFMVETDGSYSAQEIITRAVESIRAR 251
>gi|449692874|ref|XP_004213207.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Hydra magnipapillata]
Length = 131
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 92/131 (70%), Gaps = 4/131 (3%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P+VKI E DD KF L +TD S+AN+LRR+ IAEVPTIAID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 66 FIAHRLGLIPLTS-ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHR+GLIPLTS E+ M +SRDC + C+ CSV+F L KC + T VTS+D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSEF---CDECSVKFTLDVKCTGETTRHVTSRD 119
Query: 125 LYSSDHSVVPV 135
L S D V+PV
Sbjct: 120 LISEDPKVIPV 130
>gi|448091116|ref|XP_004197249.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|448095598|ref|XP_004198280.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359378671|emb|CCE84930.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359379702|emb|CCE83899.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
Length = 335
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 148/298 (49%), Gaps = 23/298 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ I + + A F+L D S+ANA RR+MIAEVP++A + + I N+SV+ DE +AHR+
Sbjct: 43 INISHISERSANFDLVHVDTSIANAFRRIMIAEVPSVAAEQIYIFNNTSVIQDEVLAHRI 102
Query: 72 GLIPLTSERAMSMRFSRDCDACD--GDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
GL+PL + + D D D S++ H+ Q K+LY +
Sbjct: 103 GLVPLKVDPDLLSWVDPTVDEKDRFTDENTIVLSLDVSCSKNPHAPQG-STDPKELYRNS 161
Query: 130 HSVVPVDFVDPAGYD----------STDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
H +P G TD I++ KLR GQE+ LRA GIG DHAK
Sbjct: 162 HVYAKDLKFEPQGRQVEIFKNNPVVPTDP--NILLAKLRPGQEISLRAHCILGIGSDHAK 219
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP AT T+ P I D+ E + E+ + + + P+ V I+ G+ +V D T
Sbjct: 220 FSPVATATYRLMPVI----DITEPIKGEQAKKFQKCFPSGVIGIN-EEGEAFVKDPRKDT 274
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ + K V++ K D FIF VEST A+ ++ ++ +LK K + +R
Sbjct: 275 VSREVLRHEDLSNK---VKLGRKRDHFIFNVESTSAMPPEEIFFKSVRILKNKAEYLR 329
>gi|302774338|ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
gi|300162102|gb|EFJ28716.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
Length = 353
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 163/310 (52%), Gaps = 32/310 (10%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R V+I+ L +D +F++ DA++ANA RR++IAEVPT+AI+ V I+ N+SV+ DE
Sbjct: 52 FRRNFHVEIKSLTEDDLEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDE 111
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC------------H 113
AHRLGL+P+ ++ + F+ + + D E ++ F L KC
Sbjct: 112 VFAHRLGLVPIKADPRL---FN---EKTNEDVATEKNTIVFSLEVKCTRQGDRMINASVK 165
Query: 114 SDQTLDVTSKDLYS--SDHSVVPVDFV---DPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
SDQ + LYS D + F D D + + I++ KLR GQ + L A
Sbjct: 166 SDQLKWLPGGSLYSMTDDSNKTYTSFSCRQDTIQNDIAPRYKDILLAKLRPGQAIELEAH 225
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
A KGIGK HAKWSP AT + PE+ + E++ + L+ E V+ P KVFDI+ G
Sbjct: 226 AVKGIGKTHAKWSPVATAAYRMLPEVVLLEEIEDELAEEL----VQKCPMKVFDIEDIMG 281
Query: 229 --QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V + T E I+ + + V++ +D FIFTVESTGA+ L A+
Sbjct: 282 GKRARVAAPRSCTLCRECIRGDDWEKR---VQLRRVKDHFIFTVESTGALPPEVLFTEAV 338
Query: 287 EVLKQKLDAV 296
++L K +
Sbjct: 339 KILSAKCQRI 348
>gi|281209634|gb|EFA83802.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 358
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 153/296 (51%), Gaps = 18/296 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ + K D+ FE+ DA +ANALRR++I+E+PT+AI+ V + N+S+L DE +AHR
Sbjct: 75 KINVLSDKPDHLVFEMIGVDAPIANALRRILISEIPTMAIERVFMINNTSILQDEVLAHR 134
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ + + + D ++ F L+ +C+ D + + + S
Sbjct: 135 LGLIPIKVDPKIFNYKEPGKEYTAED------TLIFTLKVRCYKDANGETINGTVLSKHL 188
Query: 131 SVVPVDFVDPAGYDSTDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
+ VP D + + D R I IVKLR GQ L ++ K IG++H KWSP T
Sbjct: 189 TWVPTDDQNEMFPNEADHPRPAYDDIPIVKLRPGQALEVQCYCEKNIGREHIKWSPVGTA 248
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
+ PEI ++ + ++ E+ + +S P V+DI+ ++G+ + T E I+
Sbjct: 249 FYKILPEISVS----DKVTGEKAKKLKQSCPMNVYDIE-DSGKAFAARPMDCTMCRECIR 303
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
E +P V++ D FIF++ES G I L +AI++L K V S +T
Sbjct: 304 DPEM--EP-FVKLERVRDHFIFSIESVGTIAPKTLFQDAIKILIDKCSTVENSLNT 356
>gi|190408037|gb|EDV11302.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Saccharomyces cerevisiae RM11-1a]
gi|207340297|gb|EDZ68691.1| YPR110Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259150260|emb|CAY87063.1| Rpc40p [Saccharomyces cerevisiae EC1118]
gi|323331346|gb|EGA72764.1| Rpc40p [Saccharomyces cerevisiae AWRI796]
Length = 335
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 20/298 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I L A F+L + D S+ANA RR+MI+EVP++A + V N+SV+ DE +AHR
Sbjct: 41 EVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYS 127
+GL+PL + M D + D + + ++ L KC + S K+LY+
Sbjct: 101 IGLVPLKVDPDMLTWV--DSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 128 SDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ H +P G ST I++ KLR GQE+ L+A GIG DHAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP +T ++ P+I+I ++ + E + + + P V ID + + YV DA T
Sbjct: 219 FSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDT 274
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E K V++ + FIF VES+GA+ ++ ++ +LK K + ++
Sbjct: 275 VSREVLRYEEFADK---VKLGRVRNHFIFNVESSGAMTPEEIFFKSVRILKNKAEYLK 329
>gi|302770012|ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
gi|300164069|gb|EFJ30679.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
Length = 352
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 161/310 (51%), Gaps = 32/310 (10%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R V+I+ L +D +F++ DA++ANA RR++IAEVPT+AI+ V I+ N+SV+ DE
Sbjct: 51 FRRNFHVEIKSLTEDDLEFDMIGIDAALANAFRRILIAEVPTMAIEKVLIKDNTSVIQDE 110
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC------------H 113
AHRLGL+P+ ++ + F+ + + D E ++ F L KC
Sbjct: 111 VFAHRLGLVPIKADPRL---FN---EKTNEDVATEKNTIVFSLEVKCTRQGDRMINASVK 164
Query: 114 SDQTLDVTSKDLYS--SDHSVVPVDFV---DPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
SDQ + LYS D + F D D + + I++ KLR GQ + L A
Sbjct: 165 SDQLKWLPGGSLYSMTDDSNKTYTSFSCRQDTIQNDIAPRYKDILLAKLRPGQAIELEAH 224
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
A KGIGK HAKWSP AT + PE+ L+E + E + V+ P KVFDI+ G
Sbjct: 225 AVKGIGKTHAKWSPVATAAYRMLPEVV----LLEEIEDELAEELVQKCPMKVFDIEDIMG 280
Query: 229 --QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V + T E I+ + + V++ +D FIFTVESTGA+ L A+
Sbjct: 281 GKRARVAAPRSCTLCRECIRGDDWEKR---VQLRRVKDHFIFTVESTGALPPEVLFTEAV 337
Query: 287 EVLKQKLDAV 296
++L K +
Sbjct: 338 KILSAKCQRI 347
>gi|84489668|ref|YP_447900.1| DNA-directed RNA polymerase subunit D [Methanosphaera stadtmanae
DSM 3091]
gi|121731854|sp|Q2NFZ6.1|RPOD_METST RecName: Full=DNA-directed RNA polymerase subunit D
gi|84372987|gb|ABC57257.1| RpoD [Methanosphaera stadtmanae DSM 3091]
Length = 270
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 151/287 (52%), Gaps = 27/287 (9%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++IRE D+ A F + D + N +RR+ + E+PT+AI+ V I N + + DE +AHR
Sbjct: 2 NIEIREKDDERAVFVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDLYSSD 129
LGLIP+ ++ + S CD + C+ C V F L+ KC + + V SKDL S D
Sbjct: 62 LGLIPIVTDLDSYVMPSE----CDCESGCQHCRVSFLLKEKCEEGNDSKIVYSKDLKSDD 117
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+V PV YD+ I IV+LR G+E+ L AIA G+G +HAKW T +
Sbjct: 118 PAVKPV-------YDT------IPIVRLREGEEVELEAIAELGLGSEHAKWQATTTCGYK 164
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y P+I I+ + + L + +VE P V I+ +T + V + E + + +E
Sbjct: 165 YYPKIEIDTEKVNDL-----EEYVEECPRNVLQIEDDT--LVVGNIENCSTCRTCQRLSE 217
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+V+ +E +IF +E+ G++K ++ A ++L +K D +
Sbjct: 218 KDDNAIVVDF--EESKYIFKIETDGSLKPFDVLTIACDILSEKADNI 262
>gi|225562812|gb|EEH11091.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
capsulatus G186AR]
Length = 380
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 163/338 (48%), Gaps = 46/338 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R K+ + + A F L DA++ANA RR+MIAE+P++AI+ V I N+SV+ DE
Sbjct: 48 FKRNLKITFHKNEPYEASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDE 107
Query: 66 FIAHRLGLIPLT--SERAMSMRFSRDCDACDGDGQCE---FCSVEFHLRAKCHSDQTLDV 120
+AHRLGL+PLT SE +R+ R D E + +V HL +C ++
Sbjct: 108 VLAHRLGLVPLTGSSEGINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASA 167
Query: 121 TSKD---------LYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLR 166
D +Y+ D + PV F +P G + I++ KLR GQ++ +
Sbjct: 168 NEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEPDGVIRSANP-DILLAKLRPGQKIDIE 226
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID-- 224
KGIG DHAK+SP AT ++ P+I I ++ + +L+ + P V ID
Sbjct: 227 MHCVKGIGADHAKFSPVATASYRLLPDIKIIRPILGNDALK----FARCFPKGVIGIDSV 282
Query: 225 -------PNTG--------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFT 269
P +G + VVD T E ++ E GK L I D FIF
Sbjct: 283 SAEEASRPGSGYEGHEGEKKAVVVDPFKDTMSRECLRHDEFQGKVKLGRI---RDHFIFN 339
Query: 270 VESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADD 307
VESTG ++ L + +++VL KL RL D + D
Sbjct: 340 VESTGQFRSDVLFIESVKVL--KLKCRRLKRDLAKLAD 375
>gi|6325367|ref|NP_015435.1| Rpc40p [Saccharomyces cerevisiae S288c]
gi|133369|sp|P07703.1|RPAC1_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=C37; AltName: Full=DNA-directed RNA polymerases I
and III 40 kDa polypeptide; Short=AC40; Short=C40
gi|172474|gb|AAA34999.1| RNA polymerase C-40 [Saccharomyces cerevisiae]
gi|914981|gb|AAB68080.1| Rpc40p: RNA Polymerases I and III 40 kD subunit (Swiss Prot.
accession number P07703) [Saccharomyces cerevisiae]
gi|151942887|gb|EDN61233.1| AC40 [Saccharomyces cerevisiae YJM789]
gi|256269060|gb|EEU04397.1| Rpc40p [Saccharomyces cerevisiae JAY291]
gi|285815633|tpg|DAA11525.1| TPA: Rpc40p [Saccharomyces cerevisiae S288c]
gi|323306842|gb|EGA60127.1| Rpc40p [Saccharomyces cerevisiae FostersO]
gi|349581913|dbj|GAA27070.1| K7_Rpc40p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296113|gb|EIW07216.1| Rpc40p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 335
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 20/298 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I L A F+L + D S+ANA RR+MI+EVP++A + V N+SV+ DE +AHR
Sbjct: 41 EVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYS 127
+GL+PL + M D + D + + ++ L KC + S K+LY+
Sbjct: 101 IGLVPLKVDPDMLTWV--DSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 128 SDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ H +P G ST I++ KLR GQE+ L+A GIG DHAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP +T ++ P+I+I ++ + E + + + P V ID + + YV DA T
Sbjct: 219 FSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDT 274
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E K V++ + FIF VES GA+ ++ ++ +LK K + ++
Sbjct: 275 VSREVLRYEEFADK---VKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 329
>gi|323335178|gb|EGA76468.1| Rpc40p [Saccharomyces cerevisiae Vin13]
gi|323346326|gb|EGA80616.1| Rpc40p [Saccharomyces cerevisiae Lalvin QA23]
Length = 335
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 20/298 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I L A F+L + D S+ANA RR+MI+EVP++A + V N+SV+ DE +AHR
Sbjct: 41 EVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYS 127
+GL+PL + M D + D + + ++ L KC + S K+LY+
Sbjct: 101 IGLVPLKVDPDMLTWV--DSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 128 SDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ H +P G ST I++ KLR GQE+ L+A GIG DHAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP +T ++ P+I+I ++ + E + + + P V ID + + YV DA T
Sbjct: 219 FSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDT 274
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E K V++ + FIF VES GA+ ++ ++ +LK K + ++
Sbjct: 275 VSREVLRYEEFADK---VKLGRVRNHFIFNVESXGAMTPEEIFFKSVRILKNKAEYLK 329
>gi|302414524|ref|XP_003005094.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
gi|261356163|gb|EEY18591.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
Length = 375
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 158/317 (49%), Gaps = 43/317 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ +L + F L DAS+ANALRR++I+E+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 54 RVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYIYNNTSVIQDEVLAHR 113
Query: 71 LGLIPLTSERAMSMRFSR----DCDACDGDGQCEFCSVEFHLRAKCHS---------DQT 117
LGL+P T+ +A F R + D GD ++ +V+ LR +C D T
Sbjct: 114 LGLVPFTANKAGLRDFLRWRKKNPDGTPGD-IFDYNTVQLRLRIECTRNPDAAPGEIDST 172
Query: 118 LDVTSKDLYSSDHSVVP----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
+ +++SD VP +++ D I++ KLR GQ L + KGI
Sbjct: 173 KAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNPDILLAKLRPGQVLEMDMHMHKGI 232
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID--------- 224
G DHAK+SP AT ++ P I I ++ + + + P V I+
Sbjct: 233 GSDHAKFSPVATASYRLLPTITITRPILGA----DADKFARCFPAGVIGIERVSADEART 288
Query: 225 PNTG--------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE-STGA 275
P +G + V DA T E ++ AE GK V++ + D FIF +E +TG
Sbjct: 289 PGSGYEGHEGERKAVVRDAMKDTVSRECLRHAEFQGK---VKLGRRRDHFIFAIEAATGQ 345
Query: 276 IKASQLVLNAIEVLKQK 292
+ +L+L AI+ +K+K
Sbjct: 346 WDSDELLLEAIKTMKKK 362
>gi|255933139|ref|XP_002558040.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582659|emb|CAP80852.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 154/310 (49%), Gaps = 47/310 (15%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 79
A F L DA++ANA RR+++AE+PTIAI+ I N+SV+ DE +A RLGLIPL E
Sbjct: 64 ASFSLIGLDAAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLASRLGLIPLKGSIE 123
Query: 80 RAMSMRFSRDCDACDG----DGQCEFCSVEFHLRAKCHSDQTLD---------VTSKDLY 126
M + + DG DG C+F ++ HL +C+ ++ D T+ +Y
Sbjct: 124 GINWMHWFKKASE-DGSEEEDGPCDFNTIVLHLDVECYKNEYADKDEQDPRKLYTNAHVY 182
Query: 127 SSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+ D +PV FV + I+I KLR GQ++ + +KGIG DHAK+S
Sbjct: 183 AKDLMYMPVGRQEQYFVGDGAIAPVNPD--ILIAKLRPGQKIEMELHCQKGIGADHAKFS 240
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY--- 231
P AT ++ P+I I ++ ++ + + + P V ++P T G Y
Sbjct: 241 PVATASYRLLPDIKIERPIIG----DDAKKFAKCFPKGVIGLEPVTSEEAAQPGSGYEGH 296
Query: 232 -------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
V DA T E ++ E GK V++ D FIF VESTG ++ L L
Sbjct: 297 AGEQKAVVKDAFNDTVSRECLRHEEFQGK---VKLGRVRDHFIFNVESTGQFESDMLFLE 353
Query: 285 AIEVLKQKLD 294
AI+V+K K +
Sbjct: 354 AIKVMKLKCN 363
>gi|409050971|gb|EKM60447.1| hypothetical protein PHACADRAFT_179740 [Phanerochaete carnosa
HHB-10118-sp]
Length = 378
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 157/300 (52%), Gaps = 28/300 (9%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+VK++ L +F+L DAS+ANA RR++IAEVPTIAI+ V + N+SV++DE +AHR
Sbjct: 62 QVKVQRLSQRSIEFDLVGVDASIANAFRRIIIAEVPTIAIEHVYVWNNTSVIHDEVLAHR 121
Query: 71 LGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH---SDQTLDVTSKDLY 126
+GL+PL+++ + + R A D ++ F L+A C + + ++
Sbjct: 122 IGLVPLSADPSTLDFRTPTGFGATPNDRN----TLVFRLQATCERAPKGSGKEYINDEVK 177
Query: 127 SSDHSVVP------VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
S D VP V +P G + D I++ KLR GQE+ + A KG+GK+HAKW
Sbjct: 178 SGDLVWVPQGEQEEVFANNPPGPTNKD----IVLAKLRPGQEIDMELHAIKGVGKEHAKW 233
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP AT ++ P I +N L +K + S D D G++ +D
Sbjct: 234 SPVATASYRLHPLILLNPQKPVPTHLAKKFAGCFSPGVVQVDAD---GEIS-IDLHGMRK 289
Query: 241 DD---EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
D EV++ E G VE+ D FIF VES G +L+ A++V+++K+ ++R
Sbjct: 290 DSVSREVLRHEEFQ---GCVELKRVRDWFIFNVESEGPYAPERLLPEAVKVMREKVASIR 346
>gi|389739703|gb|EIM80896.1| hypothetical protein STEHIDRAFT_105319 [Stereum hirsutum FP-91666
SS1]
Length = 369
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 160/306 (52%), Gaps = 34/306 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KVK++ L + +F+L DAS+AN+LRR+++AEVPTIAI+LV + N+SV+ DE AHR
Sbjct: 59 KVKVQSLSNRSIEFDLVGVDASIANSLRRILLAEVPTIAIELVYVWNNTSVMVDEVFAHR 118
Query: 71 LGLIPLT-SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS-- 127
LG+IPL + M MR D + +V F L C + + S D +
Sbjct: 119 LGMIPLNIPPQLMDMR-------TVNDQPTDRNTVVFKLNVVCERNPSAPKDSTDPFELY 171
Query: 128 SDHSVVPVDF-VDPAGYDST----------DQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
++H V+ +PAG +T I++ KLR GQE+ + A KG+ KD
Sbjct: 172 TNHEVLSSHLKWEPAGEQATVFEAASLVPAPTNGNIVLNKLRPGQEIDVEMHAVKGVAKD 231
Query: 177 HAKWSPAATVTFMYEPEIHIN--EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVD 234
HAK+ AT ++ P I +N + + L+ + +Q + SP V +DP T +V VD
Sbjct: 232 HAKFQAVATASYRLLPLIILNPSKPVPPHLATKFQQCF---SP-GVIRVDPKTKEVS-VD 286
Query: 235 AEAY---TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
E + EV++ E G V + K D FIF +ES GA L L +I+V+++
Sbjct: 287 EEGMRKESMSREVLRHPEFE---GCVTLARKRDHFIFNIESEGAYAPEALFLESIKVMRE 343
Query: 292 KLDAVR 297
K+ ++
Sbjct: 344 KISVLK 349
>gi|425767889|gb|EKV06440.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum Pd1]
gi|425769702|gb|EKV08188.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum PHI26]
Length = 374
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 154/310 (49%), Gaps = 47/310 (15%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 79
A F L D ++ANA RR+++AE+PTIAI+ I N+SV+ DE +A RLGLIPL E
Sbjct: 64 ASFSLIGLDPAVANAFRRILMAEIPTIAIEDCFIHNNTSVIQDEVLAQRLGLIPLKGSIE 123
Query: 80 RAMSMRFSRDCDACDG----DGQCEFCSVEFHLRAKCHSDQTLD---------VTSKDLY 126
M + + DG DG C+F ++ HL +C+ ++ D T+ +Y
Sbjct: 124 GINWMHWYKKASE-DGTEEEDGPCDFNTIVLHLDVECYKNEYADKDEQDPRKLYTNAHVY 182
Query: 127 SSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+ D +PV FV + I+I KLR GQ++ + +KGIG DHAK+S
Sbjct: 183 AKDLMYMPVGRQEQYFVGDGAIAPVNPD--ILIAKLRPGQKIEMELHCQKGIGADHAKFS 240
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY--- 231
P AT ++ P+I+I + + E+ + + + P V ++P T G Y
Sbjct: 241 PVATASYRLLPDINI----LRPIIGEDAKKFAKCFPKGVIGLEPVTSAEAAQRGSGYEGH 296
Query: 232 -------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
V DA T E ++ E GK V++ D FIF VESTG ++ L L
Sbjct: 297 AGEQKAVVKDAFNDTVSRECLRHDEFQGK---VKLGRVRDHFIFNVESTGQFESDMLFLE 353
Query: 285 AIEVLKQKLD 294
A++V+K K +
Sbjct: 354 AVKVMKLKCN 363
>gi|346979352|gb|EGY22804.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
dahliae VdLs.17]
Length = 375
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 158/317 (49%), Gaps = 43/317 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ +L + F L DAS+ANALRR++I+E+PT AI+ V I N+SV+ DE +AHR
Sbjct: 54 RVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTFAIETVYIYNNTSVIQDEVLAHR 113
Query: 71 LGLIPLTSERAMSMRFSR----DCDACDGDGQCEFCSVEFHLRAKCHS---------DQT 117
LGL+P T+ +A F R + D GD ++ +++ LR +C D T
Sbjct: 114 LGLVPFTANKAGLRDFLRWRKKNPDGTPGD-IFDYNTIQLRLRIECTRNPDAAPGEIDAT 172
Query: 118 LDVTSKDLYSSDHSVVP----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
+ +++SD VP +++ D I++ KLR GQ L + KGI
Sbjct: 173 KAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNPDILLAKLRPGQVLEMDMHMHKGI 232
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID--------- 224
G DHAK+SP AT ++ P I I ++ + + + + P V I+
Sbjct: 233 GSDHAKFSPVATASYRLLPTITITRPILGA----DAEKFARCFPAGVIGIERVSADEART 288
Query: 225 PNTG--------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE-STGA 275
P +G + V DA T E ++ AE GK V++ + D FIF +E +TG
Sbjct: 289 PGSGYEGHEGERKAVVRDAMKDTVSRECLRHAEFQGK---VKLGRRRDHFIFAIEAATGQ 345
Query: 276 IKASQLVLNAIEVLKQK 292
+ +L+L AI+ +K+K
Sbjct: 346 WDSDELLLEAIKTMKKK 362
>gi|255716882|ref|XP_002554722.1| KLTH0F12056p [Lachancea thermotolerans]
gi|238936105|emb|CAR24285.1| KLTH0F12056p [Lachancea thermotolerans CBS 6340]
Length = 350
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 151/297 (50%), Gaps = 21/297 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V I L D A F+L + DAS+ANA RR+MIAEVP++A + V N+SV+ DE +AHR+
Sbjct: 58 VNITSLDDREANFDLVNVDASIANAFRRIMIAEVPSVAAEYVYFFNNTSVIQDEVLAHRI 117
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVT-SKDLYSS 128
GL PL + M D + + + ++ L +C + D D T K LY +
Sbjct: 118 GLTPLKVDPDMLSWV--DTSVPEAERFTDENTIVLTLNVRCTRNPDAPKDCTDPKILYRN 175
Query: 129 DHSVVPVDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAKW 180
H +P G + I++ KLR GQE+ LRA GIG DHAK+
Sbjct: 176 AHIYARDLKFEPQGKQRETFAKNPVVPADPDILLAKLRPGQEISLRAHCVLGIGSDHAKF 235
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP +T ++ P I+I + ++ E Q + + V I+ N G+ +V DA T
Sbjct: 236 SPVSTASYRLMPHINI----TQPITGESAQRFAKCFSPGVIGINDN-GEAFVKDARHDTV 290
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E GK V++ ++ FIF VES GA+ ++ ++ +LK K + ++
Sbjct: 291 SREVLRHEEFEGK---VKLGRVKNHFIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 344
>gi|389583971|dbj|GAB66705.1| DNA-directed RNA polymerase I, partial [Plasmodium cynomolgi strain
B]
Length = 333
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 147/309 (47%), Gaps = 35/309 (11%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
D +++ ++K+ + +++ E+++ + S+ANALRR+M+AEVPTIAI+ V I N+
Sbjct: 39 FDINEFEKNLEMKMHKNEENLLILEVKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTG 98
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
++ DE + HRLGLIP + + + F + + + C FC F L K
Sbjct: 99 IIADEILCHRLGLIPFKFDADL-INFKEEYEKYN-HLNC-FC---FKLHVKFTKKVGSSE 152
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQR---GIIIVKLRRGQELRLRAIARKGIGKDH 177
TS+ +YS D P++ A + + I+I KL GQE+ L KGIGK H
Sbjct: 153 TSQSIYSRDLKWCPINEQQKARFQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTH 212
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI---------DPNTG 228
AKWSP T + P N E L+ EEK V P VFD+ +P
Sbjct: 213 AKWSPVCTAVYKMYPAFSFNT--CEKLTKEEKHDLVSICPKNVFDVEDSDTLVAKNPLNC 270
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
V E Y P + ++ FIFT+ESTG ++ + A+ +
Sbjct: 271 SSCRVCIEKY---------------PKKISFEKVKNHFIFTIESTGCFSSADIFRKALLI 315
Query: 289 LKQKLDAVR 297
LK K+ +V+
Sbjct: 316 LKDKVVSVK 324
>gi|115452445|ref|NP_001049823.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|108707636|gb|ABF95431.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113548294|dbj|BAF11737.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|222624742|gb|EEE58874.1| hypothetical protein OsJ_10475 [Oryza sativa Japonica Group]
Length = 379
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 158/313 (50%), Gaps = 38/313 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV + L +D +F++ DASMANA RR++IAEVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSKDL-YSS 128
LGLIPL ++ + S + D E ++ + L C L V S DL +
Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 186
Query: 129 DHSVVPVDFVDPAG-----YDSTDQQ-------------RGIIIVKLRRGQELRLRAIAR 170
+ S +P+ +G Y S Q + I I +L GQ + L A
Sbjct: 187 EGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAV 246
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI-DPNTGQ 229
KGIGK HAKWSP AT + PE+ + E++ ++ + + V P VFDI D G+
Sbjct: 247 KGIGKVHAKWSPVATAWYRMLPEVVLREEIKDA----DAEMLVAKCPVNVFDIEDLGNGE 302
Query: 230 VYVVDA--EAYTYDDEVI--KKAEAMGKPGL--VEIYAKEDSFIFTVESTGAIKASQLVL 283
V A A T + + E MG P + VE+ D FIFT+ESTGA+ L
Sbjct: 303 KRAVVARPRACTLCRQCVMGPTGEVMG-PTVEQVELRRVRDHFIFTIESTGALPPEMLFT 361
Query: 284 NAIEVLKQKLDAV 296
A+ +L++K + V
Sbjct: 362 EAVRILEEKCERV 374
>gi|345566662|gb|EGX49604.1| hypothetical protein AOL_s00078g93 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 27/306 (8%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+++ K+ I + D +F+L DAS+ANA RR++I+EVPT+AI+ V + N+S++ DE
Sbjct: 45 FKKNSKIDIHKANDLDYEFDLIGVDASVANAFRRILISEVPTLAIETVFVHNNTSIVQDE 104
Query: 66 FIAHRLGLIPLTSERA--MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT-- 121
+A RLGL+PL ++ +R+ + +F +V L+ C + T
Sbjct: 105 VLAQRLGLVPLRGDKKGFQQLRWRKKSPDEPAAEATDFNTVVMTLKVACTRNHATPNTET 164
Query: 122 --SKDLYSSDHSVVPVDFVDPAGYDST---------DQQRGIIIVKLRRGQELRLRAIAR 170
SK ++S + F P G S+ I++ KLR GQE+ L
Sbjct: 165 DPSKLYFNSSVYARDIKFA-PQGRQSSWFSGAGEIRPVNPDILLAKLRPGQEIDLEIHCV 223
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI--DPNTG 228
GIG+DHAK+SP AT ++ P I I + ++ E+ + +V P V ++ D TG
Sbjct: 224 LGIGQDHAKFSPVATASYRLLPSIKIK----KPITGEDAEKFVNCFPKGVAEVQKDKKTG 279
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ VV+ T EV++ E GK VE+ D FIF++ESTG + +L L A+
Sbjct: 280 ENTAVVVNPRKDTVSREVLRHDEFKGK---VELGRIRDHFIFSIESTGMYNSDELFLQAV 336
Query: 287 EVLKQK 292
++LK+K
Sbjct: 337 QILKKK 342
>gi|367001448|ref|XP_003685459.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
gi|357523757|emb|CCE63025.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 154/308 (50%), Gaps = 43/308 (13%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ I L + A F+L D S+ANA RR+MIAEVP++A + V N+SV+ DE +AHR+
Sbjct: 42 IHISSLTEKEANFDLVHIDTSIANAFRRIMIAEVPSVAAEYVYFMNNTSVIQDEVLAHRI 101
Query: 72 GLIPLTSERAMSMRFSR-DCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVT-SKDLYS 127
GLIPL R + S D + D + + ++ L AKC + D D T K LY
Sbjct: 102 GLIPL---RVDPDKLSWIDSELPDEEKFTDENTIVITLDAKCTRNPDAPKDATDPKVLYR 158
Query: 128 SDHSVV------------------PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
+ H PV+ +DP I+I KLR GQE+ LRA
Sbjct: 159 NAHVYARDLKFEPQGKQAELFADQPVEAIDP----------DILIAKLRPGQEISLRAHC 208
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
GIG DHAK+SP AT ++ P HIN + +S E + + + P+ V I+ + +
Sbjct: 209 ILGIGGDHAKFSPVATASYRLLP--HIN--ITSPISGESAKRFQKCFPSGVIGIN-DKDE 263
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
+V DA T EV++ E K L + D F+F VESTGA+ ++ ++ +L
Sbjct: 264 AFVKDARKDTVSREVLRHEEFQNKVKLGRV---RDHFVFNVESTGAMTPEEIFFKSVRIL 320
Query: 290 KQKLDAVR 297
K K + ++
Sbjct: 321 KNKAEYLK 328
>gi|340375977|ref|XP_003386510.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Amphimedon queenslandica]
Length = 346
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 27/301 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I L +F++ D +ANA+RR+++ EVPT+AI+ V + N+SV+ D +AHR
Sbjct: 45 RVDIVSLSYSSVEFDMIGLDPPIANAIRRILLVEVPTMAIEKVHVINNTSVIQDGVLAHR 104
Query: 71 LGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LY 126
+GLIPL ++ R S R DA + +EF L+ KC + S+D LY
Sbjct: 105 MGLIPLFADPRKFSFLPPRTEDAPFPEQLTPQHMLEFKLKVKCSRNVNAPSDSEDPNELY 164
Query: 127 ------SSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGK 175
S D VP++ F + +D + I+I KLR GQE+ LR I KGIGK
Sbjct: 165 ISHKVTSGDMKWVPIEDQSQLF---SVHDIRPVDKDILIAKLRPGQEIDLRLICVKGIGK 221
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVV 233
DHAK+SP AT ++ PEI + + ++ + E+ S +V D+ +GQ V
Sbjct: 222 DHAKFSPVATASYRLLPEITLTKPVVGP-AAEKLASCFSKGVIRVQDV---SGQKRAVVS 277
Query: 234 DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ T EV++ + V++ +D FIF+VESTGA+ A LVL AI V+ +K
Sbjct: 278 NPRRDTCSREVLRHEDLKDS---VQLSRVKDHFIFSVESTGALSADTLVLEAIRVMIEKC 334
Query: 294 D 294
+
Sbjct: 335 N 335
>gi|50418823|ref|XP_457932.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
gi|49653598|emb|CAG85988.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
Length = 335
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 147/297 (49%), Gaps = 19/297 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I L + + F+L D S+ANA RR+MI+EVP++A + V + N+SV+ DE +AHR
Sbjct: 42 EINISHLSERSSTFDLIHIDTSIANAFRRIMISEVPSVAAETVYVFNNTSVIQDEVLAHR 101
Query: 71 LGLIPLTSERAMSMRFSRDCDACD--GDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
+GLIPL + D D D S++ H Q K+LY +
Sbjct: 102 IGLIPLKVDPDTLTWIDTAQDEKDRFTDENTIVMSLDVSCTKNPHPPQG-STDPKELYRN 160
Query: 129 DHSVVPVDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAKW 180
H +P G + I++ KLR QE+ LRA G+G DHAK+
Sbjct: 161 SHVYAKDLKFEPQGRQLEIFKNNPVVAADPDILLAKLRPNQEISLRAHCILGVGSDHAKF 220
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP AT ++ P I I E + E + + + P+ V DI+ N G+ V D+ T
Sbjct: 221 SPVATASYRLMPVITI----TEPIKGESGKRFQKCFPSGVIDINKN-GEAVVKDSRKDTV 275
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E GK V++ K D FIF VESTGA+ ++ ++ VLK K + +R
Sbjct: 276 SREVLRHEEFNGK---VKLGRKRDHFIFNVESTGAMSPEEIFFKSVRVLKNKAEYLR 329
>gi|405120194|gb|AFR94965.1| rpa42 [Cryptococcus neoformans var. grubii H99]
Length = 350
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 154/319 (48%), Gaps = 48/319 (15%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
++ L +F+L DAS+ANALRR +IAEVPT+AI+ V + N+S++ DE + HR+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 74 IPLT-SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-------- 124
+PL R++ R S + + D +V F LR +C +D + D
Sbjct: 111 VPLKIDPRSLRYRPSANSQPHEHD------TVVFDLRVRCDRRPNVDRSETDPKKMYFDS 164
Query: 125 -LYSSDHSVVPVDFVDPAGYDSTDQQRG------------IIIVKLRRGQELRLRAIARK 171
+YS VP S DQ++ I++VKLR GQ++ L ARK
Sbjct: 165 NVYSGMLKWVP----------SGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARK 214
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--- 228
G+G DHAK+SP AT ++ P I L + E +Q + P V +I+ +
Sbjct: 215 GVGADHAKFSPVATASYRLLPHI----ILRGPIPKEHQQKFKGCFPPGVIEIEKDESGED 270
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
Q V + T EV++ E LV++ D FIF VES G +LV AI++
Sbjct: 271 QCVVKNPRKDTVSREVLRHPEFQ---DLVQLARIRDHFIFNVESAGQYSPEELVPEAIKI 327
Query: 289 LKQKLDAVRLSEDTVEADD 307
L K+ V D + A D
Sbjct: 328 LLGKIKDVEEGLDKLFATD 346
>gi|294891094|ref|XP_002773417.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239878570|gb|EER05233.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 365
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 159/325 (48%), Gaps = 32/325 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +QR K+K++ D+ + ++ D +ANALRR+MIAE+PTIAI+ + N+ V
Sbjct: 46 DREEFQRRLKMKVQRASDEVVEVDVVGIDPPIANALRRIMIAEIPTIAIEKCYVYQNTGV 105
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMR------FSRDCDACDGDGQCEFCSVEFHLRAKCHS 114
++DE +AHRLGL+P+ + ++ MR RD D D D + F L C
Sbjct: 106 IHDEILAHRLGLVPIYCDIDSLKMRDEDAPPEQRD-DVTDPDTW-----ICFSLEKVCPQ 159
Query: 115 DQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG----IIIVKLRRGQELRLRAIAR 170
S +YS D VP++ Y D R ++I KLR GQEL ++
Sbjct: 160 SHP-PRESMPVYSGDLKWVPLNAEQEERY-KDDPPRPVYDDVLITKLRCGQELEIKCFCC 217
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
KGIGK HAKWSP T T+ P+I L E + E + + P VFDI+ G
Sbjct: 218 KGIGKIHAKWSPVCTATYRLMPDII----LKEPIEGAEAKKFKLVCPMGVFDIE--DGAA 271
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
V + A T + I+ V + +D FIFTVES G I A Q+ A V++
Sbjct: 272 VVKNPRACTTCRQCIEPGNGFAD--KVSLGKLKDHFIFTVESVGQIPAPQIFAQAAVVMQ 329
Query: 291 QKLDAVRLSEDTVEADDQFGELGAH 315
K RL + ++E DQ G+ A
Sbjct: 330 NK---CRLVKKSLE--DQMGKKTAR 349
>gi|378756240|gb|EHY66265.1| RNA polymerase II subunit 3 [Nematocida sp. 1 ERTm2]
Length = 254
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 136/288 (47%), Gaps = 43/288 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++I E+ +D KF L D MANALRRV++ E+PT+AID+V+ + N +V+ +E R
Sbjct: 3 KIEIEEVTEDNIKFTLEDCTLGMANALRRVIMTEIPTLAIDIVQFDKNYTVIPEEMTTDR 62
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ S + +DC C+ CS+ L K TL VTSK L+
Sbjct: 63 LGLIPIESSTVEKYLYPKDCSC---KSFCKNCSISIVLDVKNDGPTTLTVTSKSLFMEGG 119
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V ++ DP + II +L Q ++ + IA KG+GK HAKWSP ATV F Y
Sbjct: 120 --VSLNIGDP--------KHPSIITRLGHKQSIKCKCIAVKGVGKKHAKWSPVATVAFGY 169
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
+ E SL + W E + G+ +E Y + E K
Sbjct: 170 D----------EDNSLRHTKFWHEKDINSEWPKPWFAGESASAQSETYKHSTEPKK---- 215
Query: 251 MGKPGLVEIYAKEDSFIFTVEST-GAIKASQLVLNAIEVLKQKLDAVR 297
F F VE G++K +++ A++VLK KL VR
Sbjct: 216 ---------------FHFNVEVIKGSLKPMEVLSQAVKVLKDKLKHVR 248
>gi|363807500|ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
gi|255637183|gb|ACU18922.1| unknown [Glycine max]
Length = 388
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 159/312 (50%), Gaps = 36/312 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+++ L D +F++ D ++ANA RR++IAEVPT+AI+ V I N+SV+ DE ++HR
Sbjct: 82 KVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHR 141
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSKDL-YSS 128
LGLIP+ RA F +A GD + E ++ F L +C Q + V S L +
Sbjct: 142 LGLIPI---RADPRLFEYPENA--GDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLP 196
Query: 129 DHSVVPVDFVDP-------------AGYDSTDQQRG---------IIIVKLRRGQELRLR 166
+ S +P + V P DS + II+ KL GQE+ L
Sbjct: 197 NGSELPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELE 256
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
A A KGIGK HAKWSP AT + PE+ + E + + L+ E K P VFDI+ +
Sbjct: 257 AHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKN----KCPVNVFDIE-D 311
Query: 227 TGQVYVVDAEAYTYDDEVIKKAEAMGKPG--LVEIYAKEDSFIFTVESTGAIKASQLVLN 284
G+ A D + ++ GK V + ++ FIFT+ESTGA+ L
Sbjct: 312 IGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTE 371
Query: 285 AIEVLKQKLDAV 296
A+++L+ K + V
Sbjct: 372 AVKILEDKCERV 383
>gi|401884851|gb|EJT48989.1| hypothetical protein A1Q1_01900 [Trichosporon asahii var. asahii
CBS 2479]
Length = 356
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 153/307 (49%), Gaps = 34/307 (11%)
Query: 17 LKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 76
L +F+L DAS+AN+LRRVMIAEVPT+AI+ V + N+S++ DE +AHR+GL+PL
Sbjct: 63 LTPSTVEFDLVGVDASIANSLRRVMIAEVPTVAIEDVYVWNNTSIMQDEVLAHRVGLVPL 122
Query: 77 -TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT-----SKDLYSSDH 130
R + + S + D F LR KC D+ D K LY +
Sbjct: 123 KIDPRTLDFKPSNYSAPMENDTHV------FDLRVKC--DRRRDAAPGETDPKKLYYDSN 174
Query: 131 SVVPVDFVDPAGYDSTDQQRG---------IIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+ P+G + + +G I++VKLR GQ + L ARKG+G DHAK+S
Sbjct: 175 VYTGMMKWVPSGQQKS-KYKGKEPRPVLDDILLVKLRPGQMVDLHCFARKGVGADHAKYS 233
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN---TGQVYVVDAEAY 238
P AT ++ P I L E + LE+++ + V +++ + QV V +
Sbjct: 234 PVATASYRLLPHI----ILREPIPLEDQEKFKSCFAPGVIELEKDADGNQQVVVKNPRKD 289
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRL 298
T EV++ E K VE+ D FIF VES G +LV AI+++ K+ AV
Sbjct: 290 TVSREVLRHKEFQDK---VELARIRDHFIFNVESAGQYPPEELVPEAIKIMLSKISAVEA 346
Query: 299 SEDTVEA 305
D + A
Sbjct: 347 GLDKLFA 353
>gi|310800375|gb|EFQ35268.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 372
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 152/320 (47%), Gaps = 54/320 (16%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR++IAE+PTIAI+ V IE N+SV+ DE +AHRLGLIP T
Sbjct: 65 ASFSLIGVDASIANAFRRILIAEIPTIAIENVYIENNTSVIQDEVLAHRLGLIPFTGNPE 124
Query: 82 MSMRFSRDCDACD--GDGQCEFCSVEFHLRAKC---------HSDQTLDVTSKDLYSSDH 130
+F + + G G ++ +V+ LR +C +D + +Y+ D
Sbjct: 125 GIHKFLKWYRKPEHGGKGSFDYNTVQLRLRVECTRNPDAAPGETDPNKAFLNSSVYAKDI 184
Query: 131 SVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
VP D + P D I++ KLR GQ + L KGIG DHAK+
Sbjct: 185 EFVPTGRQLEFFSGEDAIRPVNPD-------ILVAKLRPGQCIELDMHMHKGIGADHAKF 237
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY-- 231
SP AT ++ P I+I ++ ++ + + + P V ID T G Y
Sbjct: 238 SPVATASYRLMPTINITRPILG----QDAEKFAKCFPEGVIGIDKVTKKDAAVAGSGYEG 293
Query: 232 --------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
V DA T E ++ E GK V++ D FIF++ESTG + +L L
Sbjct: 294 HEGEKKAVVKDAMKDTVSRECLRHPEFEGK---VKLGRVRDHFIFSIESTGQWDSDELFL 350
Query: 284 NAIEVLKQKLDAVRLSEDTV 303
+++ K + +RL + +
Sbjct: 351 ESVKQFKTR--CIRLEQQVI 368
>gi|294495898|ref|YP_003542391.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
gi|292666897|gb|ADE36746.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
Length = 266
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 136/281 (48%), Gaps = 28/281 (9%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ I EL D A+F L D DA+ AN LRR M+A+VPT+AID V I N+SVL DE IA RL
Sbjct: 3 IDILELSDRSARFILSDVDAAFANGLRRAMLADVPTLAIDEVNIYNNTSVLYDEQIALRL 62
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
L+PL + + F+ + C + C C+V L + D+ V S DL S+D
Sbjct: 63 ALVPLVT---IFNEFTPH-EECSCEEGCPACTVSLTLSVEAPMDEDKTVYSGDLVSADPK 118
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
+ D I +VKL+ GQ+L L IA+ G G DHAKW +
Sbjct: 119 IKAAD-------------SNIAVVKLKGGQQLVLEGIAKMGYGHDHAKWQAGVACGYKNV 165
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
P I I E L EK V + P + + + +V + + + K+ A
Sbjct: 166 PVIEI-----EGCDLCEK--CVSACPRDILTLGKESAEV----VDDRLLNCSLCKQCVAA 214
Query: 252 GKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ + SFIFT+ES G+ A +L++NA+ ++ K
Sbjct: 215 CDIDAISVSENNTSFIFTLESDGSYSAEELIINAVNTIRTK 255
>gi|378727237|gb|EHY53696.1| DNA-directed RNA Polymerase III subunit C5 [Exophiala dermatitidis
NIH/UT8656]
Length = 373
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 161/328 (49%), Gaps = 42/328 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+ + + D A F L DA++ANA RR++IAEVPT+AI+ V ++ N+SV+ DE +AHR
Sbjct: 53 KVQFHQNEADEATFSLIGVDAAIANAFRRILIAEVPTLAIEKVYVQNNTSVIADEVLAHR 112
Query: 71 LGLIPLTS--ERAMSMRFSRDCD---ACDGDGQCEFCSVEFHLRAKC----HSDQTLDVT 121
LGLIPL E +++ D + +G G+ ++ +V HL +C H+D+
Sbjct: 113 LGLIPLKGNIEGLKWLKWFIDSNPEFGFEGTGRADYNTVVLHLHVRCERNPHADKNATEP 172
Query: 122 SKDLYSSDHSVVPVDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGI 173
+ +S + + +P G + G I+I KLR GQE+ + A GI
Sbjct: 173 EEKYINSTVYSRHIQW-EPQGQQQERFKDGPIEPVSPDILIAKLRPGQEIDMVLHAHLGI 231
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
G DHAK+SP AT T+ P I I + ++ + + + + + P V D+D T
Sbjct: 232 GADHAKFSPVATATYRLMPTITITKPILGA----DARKFQKCFPPGVIDLDRVTPSDAAS 287
Query: 234 DAEAY-----------------TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAI 276
D AY T E ++ E K V++ +D FIF VESTG
Sbjct: 288 DNPAYHGREGDEKAVVKDPMRDTVSRECLRHDEFKDK---VKLGRVQDHFIFNVESTGQF 344
Query: 277 KASQLVLNAIEVLKQKLDAVRLSEDTVE 304
+ L L ++ VLK K + + D +E
Sbjct: 345 PSDMLFLESVNVLKYKAKRLLRALDEME 372
>gi|154279942|ref|XP_001540784.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
gi|150412727|gb|EDN08114.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
Length = 380
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 161/338 (47%), Gaps = 46/338 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R KV + + A F L DA++ANA RR+MIAE+P++AI+ V I N+SV+ DE
Sbjct: 48 FKRNLKVTFHKNEPYEASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDE 107
Query: 66 FIAHRLGLIPLT--SERAMSMRFSRDCDACDGDGQCE---FCSVEFHLRAKCHSDQTLDV 120
+AHRLGL+PLT SE +R+ R D E + +V HL +C ++
Sbjct: 108 VLAHRLGLVPLTGSSEGINWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASA 167
Query: 121 TSKD---------LYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLR 166
D +Y+ D + PV F +P G + I++ KLR GQ++ +
Sbjct: 168 NEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEPDGVIRSANP-DILLAKLRPGQKIDIE 226
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID-- 224
KGIG DHAK+SP AT ++ P+I I ++ + +L+ + P V ID
Sbjct: 227 MHCVKGIGADHAKFSPVATASYRLLPDIKIIRPILGNDALK----FARCFPKGVIGIDSV 282
Query: 225 -----PNTGQVY----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFT 269
G Y VVD T E ++ E GK L I D FIF
Sbjct: 283 SAEEASRAGSGYEGHEGEKKAVVVDPFKDTMSRECLRHDEFQGKVKLGRI---RDHFIFN 339
Query: 270 VESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADD 307
VESTG ++ L + +++VL KL RL D + D
Sbjct: 340 VESTGQFRSDVLFIESVKVL--KLKCRRLKRDLAKLAD 375
>gi|443923219|gb|ELU42493.1| ribonuclease H [Rhizoctonia solani AG-1 IA]
Length = 1023
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 159/313 (50%), Gaps = 30/313 (9%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+QR V++R D+ F+L DAS+ANA RR++IAEVPT+AI+ V I N+SV+ DE
Sbjct: 720 FQRL-HVEVRGADDEAVDFDLVGVDASIANAFRRILIAEVPTVAIENVYIWNNTSVIQDE 778
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGD-GQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
+AHRLGL+P+ ++ A+ D D G + ++ F L C + + D
Sbjct: 779 VLAHRLGLVPIRADPAL-------LDFPDSAVGPTDRNTLVFKLSVTCSRNPGVPKDETD 831
Query: 125 ---LYSSDHSV--------VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
LY + + + V D I++ KLR GQEL + KG+
Sbjct: 832 PAVLYKNANVLSGHMEWNGVGEQVNDFGNNPPRPHNPKILLAKLRPGQELEMELHCVKGV 891
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN-TGQVYV 232
G+DHAK+SP AT ++ P + + + L +V P+ VF ++ GQ V
Sbjct: 892 GQDHAKFSPVATASYRLMPHVIFRQPIPPHLC----DKFVSCFPSGVFAVEQGANGQKKV 947
Query: 233 V--DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
V D T EV++ E G++E+ D F+F +ES+G+I A L+ A++V++
Sbjct: 948 VAKDMRKDTVSREVLRHKEFE---GMIELTRIRDFFMFRIESSGSIPAPNLMPMAVDVMR 1004
Query: 291 QKLDAVRLSEDTV 303
QK+ ++ + + +
Sbjct: 1005 QKISKLKAAAENL 1017
>gi|156099087|ref|XP_001615546.1| DNA-directed RNA polymerase I [Plasmodium vivax Sal-1]
gi|148804420|gb|EDL45819.1| DNA-directed RNA polymerase I, putative [Plasmodium vivax]
Length = 333
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 151/318 (47%), Gaps = 36/318 (11%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
D +++ ++K+ + +++ E+++ + S+ANALRR+M+AEVPTIAI+ V I N+
Sbjct: 39 FDINEFEKNLEMKMHKNEENLLILEVKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTG 98
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
++ DE + HRLGLIP + + + F + + + C FC F L K
Sbjct: 99 IIADEILCHRLGLIPFKFDADL-INFKEEYEKYN-HLNC-FC---FKLHVKFTKKAGSSE 152
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQ---RGIIIVKLRRGQELRLRAIARKGIGKDH 177
T + +YS D P++ A + + I+I KL GQE+ L KGIGK H
Sbjct: 153 TCQSIYSRDLKWCPINEHQKARFQKNPPRVVDDNILITKLSNGQEIELICFLEKGIGKTH 212
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI---------DPNTG 228
AKWSP T + P N E + EEK+ V P VFD+ +P
Sbjct: 213 AKWSPVCTAVYKMYPAFSFNT--CEKFTQEEKKDLVNICPKNVFDVEDSDTLVAKNPLNC 270
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
V E Y P + ++ FIFT+ESTG ++ + A+ +
Sbjct: 271 SSCRVCIEKY---------------PKKISFEKVKNHFIFTIESTGCFSSADIFRKALLI 315
Query: 289 LKQKLDAVR-LSEDTVEA 305
LK K+ +V+ + ED +A
Sbjct: 316 LKDKVVSVKEVLEDQTKA 333
>gi|58266722|ref|XP_570517.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110920|ref|XP_775924.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258590|gb|EAL21277.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226750|gb|AAW43210.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 350
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 148/301 (49%), Gaps = 34/301 (11%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
++ L +F+L DAS+ANALRR +IAEVPT+AI+ V + N+S++ DE + HR+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 74 IPLT-SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-------- 124
+PL R++ R S + + D +V F LR +C +D + D
Sbjct: 111 VPLKIDPRSLRYRPSANSQPHEHD------TVVFDLRVRCDRRPNVDRSETDPKKMYFDS 164
Query: 125 -LYSSDHSVVPV-----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+YS VP F A D I++VKLR GQ++ L ARKG+G DHA
Sbjct: 165 NVYSGMLKWVPSGDQKKKFKGKAPRPVNDD---ILLVKLRPGQQVDLHCFARKGVGADHA 221
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG---QVYVVDA 235
K+SP AT ++ P I L + E +Q + P V +I+ + Q V +
Sbjct: 222 KFSPVATASYRLLPHI----ILRGPIPKEHQQKFKGCFPPGVIEIEKDENGEDQCVVKNP 277
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
T EV++ E LV++ D FIF VES G +LV AI++L K+
Sbjct: 278 RKDTVSREVLRHPEFQ---DLVQLARIRDHFIFNVESAGQYSPEELVPEAIKILLGKIKD 334
Query: 296 V 296
V
Sbjct: 335 V 335
>gi|156849157|ref|XP_001647459.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
gi|156118145|gb|EDO19601.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
Length = 335
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 21/298 (7%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I + A F+L + D S+ANA RR+MI+EVP++A++ V N+SVL DE +AHR
Sbjct: 41 EINISSINSREANFDLINIDTSIANAFRRIMISEVPSVAVEYVYFLNNTSVLQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSS 128
+GL+PL + M D + + + + ++ L KC + D D T +
Sbjct: 101 IGLVPLKVDPDMLSWI--DSELPEEEKFTDENTIVLSLNVKCTMNPDAPKDCTDPKILYK 158
Query: 129 DHSVVPVDF-VDPAG--------YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ +V D +P G Y I++ KLR GQE+ L+A GIG DHAK
Sbjct: 159 NSNVYARDLKFEPQGKQVESFANYPVVPANPDILLCKLRPGQEISLKAHCILGIGSDHAK 218
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP AT ++ P I+I + ++ E+ + + + V I+ N G+ YV DA T
Sbjct: 219 FSPVATASYRLMPHINI----TQPITGEDAKKFQKYFMPGVIGINDN-GEAYVKDARKDT 273
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV + E GK V++ + FI VESTGA+ ++ ++ +L+ K + ++
Sbjct: 274 VSREVFRHPEFEGK---VKLGRVRNHFIVNVESTGAMTPEEIFFKSVRILRNKAEYLK 328
>gi|170033286|ref|XP_001844509.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
gi|167873916|gb|EDS37299.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
Length = 335
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 165/303 (54%), Gaps = 26/303 (8%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D ++R ++ + +++ +F++ ++ANA RR+M++EVP++AI+ V I N+S+
Sbjct: 36 DFERFKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYNNTSI 95
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLD 119
+ DE +AHRLGLIPL ++ + + + DA + ++EF L+ KC + + +
Sbjct: 96 IQDEVLAHRLGLIPLKADPRLFEYKTNEGDAANAQD-----TLEFELKVKCTKKNKDSTE 150
Query: 120 VTSKDLYSSDHSVVP--VDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIA 169
VT+ D +HS+ + +V P G ++ + I+I ++R G E ++ A
Sbjct: 151 VTNNDSMYKNHSIYSGQIKWV-PVGNQASIYKEADVGPIDDDILISRMRPGHEFDIKLFA 209
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KG+GKDHAK+SP AT ++ PEIH+ ++ + +L ++ + SP V +ID + Q
Sbjct: 210 VKGVGKDHAKFSPVATASYRLLPEIHLKRPVVGNQALLLQKCF---SPG-VIEIDKD-DQ 264
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
YV DA + V + + + + + FIF VES GA+K + + A +VL
Sbjct: 265 AYVKDARYDSCSRNVYRYPQLADSVTMSRV---RNHFIFNVESLGALKPDAIFVEAAKVL 321
Query: 290 KQK 292
K+K
Sbjct: 322 KKK 324
>gi|356527169|ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Glycine max]
Length = 393
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 159/312 (50%), Gaps = 36/312 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+++ L D +F++ D ++ANA RR++IAEVPT+AI+ V I N+SV+ DE ++HR
Sbjct: 87 KVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHR 146
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSKDL-YSS 128
LGLIP+ RA F +A GD + E ++ F L +C Q + V S L +
Sbjct: 147 LGLIPI---RADPRLFEYPENA--GDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLP 201
Query: 129 DHSVVPVDFVDP-------------AGYDSTDQQRG---------IIIVKLRRGQELRLR 166
+ S +P + V P DS + II+ KL GQE+ L
Sbjct: 202 NGSELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPGQEIELE 261
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
A A KG GK HAKWSP AT + PE+ + +D+ + L+ E K P VFDI+ +
Sbjct: 262 AHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKDVEDELAEELKN----KCPVNVFDIE-D 316
Query: 227 TGQVYVVDAEAYTYDDEVIKKAEAMGKPG--LVEIYAKEDSFIFTVESTGAIKASQLVLN 284
G+ A D + ++ GK V + ++ FIFT+ESTGA+ L
Sbjct: 317 IGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTE 376
Query: 285 AIEVLKQKLDAV 296
A+++L+ K + V
Sbjct: 377 AVKILEDKCERV 388
>gi|225707230|gb|ACO09461.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Osmerus mordax]
Length = 351
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 165/321 (51%), Gaps = 24/321 (7%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D + Q+F K + I E+ + +F++ DA++ANA RR+M+AEVPT+A++ V I N
Sbjct: 39 DAWNMQKFQKNFRIDIVEMDETTMEFDMVGIDAAIANAFRRIMLAEVPTMAVEKVYIYNN 98
Query: 59 SSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL 118
+S++ DE +AHRLGLIP+ ++ + + + + E +++ L+ KC +
Sbjct: 99 TSIIQDEILAHRLGLIPIKADPRL-FEYRNIGEEGGEEEGTEIDTIQLQLKIKCTRNPRA 157
Query: 119 DVTSKD---------LYSSDHSVVPV-DFVDPAGYDSTDQQRG-IIIVKLRRGQELRLRA 167
S D +YS D VP+ + D + G I+I +LR GQEL +
Sbjct: 158 PKDSSDPRELYLNHMVYSKDMKWVPIGNQADVFADANIGPVHGDILIAQLRPGQELDVVM 217
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT 227
KGIGKDHAK+SP AT ++ PEI LME++ E+ + V +++
Sbjct: 218 SCVKGIGKDHAKFSPVATASYRLLPEI----TLMETVEGEKAERLKSCFSPGVIELENCN 273
Query: 228 GQVY--VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNA 285
G+V VV++ T EV++ + LV++ D FIF+VESTG + +V A
Sbjct: 274 GKVIAKVVNSRPDTCSREVLRHDDL---KNLVKLARVRDHFIFSVESTGILPPDVVVTEA 330
Query: 286 IEVLKQKLDAVRLSEDTVEAD 306
I+VL K D+ E D
Sbjct: 331 IKVLMSKCRRFLNELDSTEVD 351
>gi|221056596|ref|XP_002259436.1| DNA-diDNA-directed RNA polymerase I [Plasmodium knowlesi strain H]
gi|193809507|emb|CAQ40209.1| DNA-diDNA-directed RNA polymerase I, putative [Plasmodium knowlesi
strain H]
Length = 333
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 146/309 (47%), Gaps = 35/309 (11%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
D +++ ++K+ + +++ E+++ + S+ANALRR+M+AEVPTIAI+ V I N+
Sbjct: 39 FDINEFEKNLEMKMHKNEENLLILEVKNLNVSIANALRRIMLAEVPTIAIEKVNIFQNTG 98
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
++ DE + HRLGLIP + + + F + + + C FC F L K
Sbjct: 99 IIADEILCHRLGLIPFKFDADL-INFKEEYEKYN-HLNC-FC---FKLHVKFTKKAGSSE 152
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQ---RGIIIVKLRRGQELRLRAIARKGIGKDH 177
TS+ +YS D P++ + + I+I KL GQE+ L KGIGK H
Sbjct: 153 TSQSIYSRDLKWCPINEQQKLRFQKNPPKVVDDNILITKLANGQEIELICFLEKGIGKTH 212
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI---------DPNTG 228
AKWSP T + P N E+ + EEK V P VFD+ +P
Sbjct: 213 AKWSPVCTAVYKMYPSFSFNT--CENFTKEEKNDLVNICPRNVFDVEDSDTLVAKNPLNC 270
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
V E Y P + ++ FIFT+ESTG ++ + A+ +
Sbjct: 271 SSCRVCIEKY---------------PKKISFEKVKNHFIFTIESTGCFSSADIFRKALLI 315
Query: 289 LKQKLDAVR 297
LK K+ +V+
Sbjct: 316 LKDKVVSVK 324
>gi|390597050|gb|EIN06450.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 379
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 165/328 (50%), Gaps = 35/328 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D A +++ +VK+ L +F+L DAS+ANA+RR++IAEVPTIAI+ V + N+SV
Sbjct: 46 DLARFKKNLQVKVTRLSQRSVEFDLVGVDASIANAIRRILIAEVPTIAIEHVYVWNNTSV 105
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-------- 113
+ DE ++HRLGL+PL + A+ + D D + ++ F L C
Sbjct: 106 IVDEVLSHRLGLVPLNVDPAL----LDERDPPPDDQATDRNTIVFRLHVACERKKKDSKA 161
Query: 114 -----SDQTLDVTSKDLYSSDHSVVP--VDFV---DPAGYDSTDQQRG------IIIVKL 157
Q ++ D +H V+ +++V D A Y+ ++R I++ KL
Sbjct: 162 KGKGKEPQPVEEQHPDELYVNHEVLSGQLEWVPQGDQASYEPFIKKRPAPTNPDIVLAKL 221
Query: 158 RRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSP 217
R GQE+ + A K +GKDHAK+ P AT ++ P I +N D + + E + + +
Sbjct: 222 RPGQEIEMELHAVKSVGKDHAKFCPVATASYRLLPHIILNPD--KPVPPEYAEKFQKCFA 279
Query: 218 TKVFDIDPNTGQVYV--VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGA 275
V +DP T V V + T EV + E G V++ D F+F +ES GA
Sbjct: 280 PGVIKVDPKTKAVSVDQKNVRKETMSREVFRHPEFE---GCVDLRRVRDYFLFNIESEGA 336
Query: 276 IKASQLVLNAIEVLKQKLDAVRLSEDTV 303
+ +L+ A+ V++ K+ +R + + +
Sbjct: 337 YEPQRLMHEAVSVMRSKIATIRRAAEAI 364
>gi|429853404|gb|ELA28479.1| DNA-directed RNA polymerases i and iii 40 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 371
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 151/315 (47%), Gaps = 44/315 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR +IAE+PT+AI+ V IE N+SV+ DE +AHRLGLIP T
Sbjct: 64 ASFSLIGVDASIANAFRRTLIAEIPTVAIENVYIENNTSVIQDEVLAHRLGLIPFTGNPE 123
Query: 82 MSMRFSRDCDACD--GDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSSDH 130
F + + G G ++ +V+ LR +C + KD +Y+ D
Sbjct: 124 GIHNFLKWYRKPEDGGKGSFDYNTVQLRLRIECTRNPDASPNEKDTNVAFNHASVYAKDI 183
Query: 131 SVVP----VDFVDPAGYDSTDQ-QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
VP V+F +G D+ I+I KLR GQ + L KGIG DHAK+SP AT
Sbjct: 184 EFVPSGRQVEFF--SGEDAIRPVNPDILIAKLRPGQCIELDMHMHKGIGADHAKFSPVAT 241
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY------- 238
++ P I I ++ ++ + + + P V I+ T + V Y
Sbjct: 242 ASYRLMPTITITRPILG----QDAEKFAKCFPKGVIGIEKVTKKEAAVAGSGYEGHEGEK 297
Query: 239 ----------TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
T E ++ AE GK V++ D FIF++ESTG + QL L +++
Sbjct: 298 KAVVKDAMKDTVSRECLRHAEFDGK---VKLGRVRDHFIFSIESTGQWDSDQLFLESVKQ 354
Query: 289 LKQKLDAVRLSEDTV 303
K + +RL + +
Sbjct: 355 FKTR--CIRLEQQVI 367
>gi|392569943|gb|EIW63116.1| hypothetical protein TRAVEDRAFT_17573 [Trametes versicolor
FP-101664 SS1]
Length = 454
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 157/365 (43%), Gaps = 99/365 (27%)
Query: 4 ASYQRFPKVKIRELKDDYAKFELRDTDASMANALR------------------------- 38
AS P V+IR+LK + F L++ D + AL
Sbjct: 3 ASLDAEPIVRIRDLKKNSVNFVLQNVDLAFVPALPSMSSPHLRLTVTAAQIRQLVQESDD 62
Query: 39 ---------RVMIAE--VPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-MSMRF 86
RV++ + VP AID+VEIE N++VL DEFIAHRLG+IPL S +MR+
Sbjct: 63 GGYTHCRDPRVLMQQWRVPA-AIDMVEIETNTTVLPDEFIAHRLGMIPLVSTNCDEAMRY 121
Query: 87 SRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDS 145
+RDC + +C++C++E L CH T+D+TS L VVP G+D+
Sbjct: 122 TRDCTC---EVRCQYCAIELMLNVSCHEGGHTMDITSDML-----EVVPTSRPGFGGFDA 173
Query: 146 TD----------------------QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
I+I K+R+GQELR+R IA+KGI K+H+KWSP
Sbjct: 174 DSDGSEELAKRVESFGHPIGQGDPSTPPILICKIRKGQELRIRCIAKKGIAKEHSKWSPC 233
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
A V F Y+P L W E + + N E DD
Sbjct: 234 AAVGFEYDPHN----------KLRHTSYWFEYDARSEWPLSKNAKD------EEPARDDL 277
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD--AVRLSED 301
+ AK + F VE+ G++ A ++V+ + L+ KL + L D
Sbjct: 278 PF------------DYNAKPEKFYMDVETDGSLGAQEVVMKGLAELQTKLANLVLGLKGD 325
Query: 302 TVEAD 306
EAD
Sbjct: 326 PPEAD 330
>gi|294894048|ref|XP_002774720.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
gi|239880227|gb|EER06536.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
Length = 310
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 145/297 (48%), Gaps = 32/297 (10%)
Query: 30 DASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMSMR--- 85
D +ANALRR+MIAE+PTIAI+ + N+ V++DE +AHRLGL+P+ + ++ MR
Sbjct: 19 DPPIANALRRIMIAEIPTIAIEKCYVYQNTGVIHDEILAHRLGLVPIYCDIDSLKMRDED 78
Query: 86 ---FSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAG 142
RD D D D + F L C S +YS D VP++
Sbjct: 79 APPEQRD-DVTDPDTW-----ICFSLEKVCPQSHP-PRESMPVYSGDLKWVPLNAEQEER 131
Query: 143 YDSTDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 198
Y D R ++I KLR GQEL ++ KGIGK HAKWSP T T+ P+I
Sbjct: 132 YKD-DPPRPVYDDVLITKLRCGQELEIKCFCCKGIGKIHAKWSPVCTATYRLMPDII--- 187
Query: 199 DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVE 258
L E + E + + P VFDI+ G V + A T + I+ V
Sbjct: 188 -LKEPIEGAEAKKFKSVCPMGVFDIE--DGAAVVKNPRACTTCRQCIEPGNGFAD--KVS 242
Query: 259 IYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADDQFGELGAH 315
+ +D FIFTVES G I A Q+ A V++ K RL + ++E DQ G+ A
Sbjct: 243 LGKLKDHFIFTVESVGQIPAPQIFAQAAVVMQNK---CRLVKKSLE--DQMGKKTAR 294
>gi|410929907|ref|XP_003978340.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Takifugu rubripes]
Length = 351
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 161/305 (52%), Gaps = 23/305 (7%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D A +++ ++ + L + +F++ DA++ NA RR+++AEVPT+AI+ V I N+S+
Sbjct: 42 DMAKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSI 101
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R S D +A + +G E +++ L+ C +
Sbjct: 102 VQDEVLAHRLGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASSK 159
Query: 121 TSKD---------LYSSDHSVVPV-DFVDPAGYDSTDQQRG-IIIVKLRRGQELRLRAIA 169
S D +YS D VP+ + D S G I+I +LR GQEL +
Sbjct: 160 DSSDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHC 219
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ PEI L+E + E+ + V D++ + G+
Sbjct: 220 IKGIGKDHAKFSPVATASYRLLPEI----TLLEPVEGEKAERLQRCFFRGVIDLEDSNGK 275
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V ++ T EV++ + +V++ D FIFTVE+TG + LV AI+
Sbjct: 276 KVAKVANSRLDTCSREVLRHDDL---KNVVKLGRHRDHFIFTVETTGILPPDVLVTEAIK 332
Query: 288 VLKQK 292
VL K
Sbjct: 333 VLMTK 337
>gi|342319511|gb|EGU11459.1| Hypothetical Protein RTG_02619 [Rhodotorula glutinis ATCC 204091]
Length = 785
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 27/297 (9%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V++ L +F+L DAS+ANA+RR++IAEVPT+A++ V + N+S++ DE +A R
Sbjct: 75 RVQVNSLSPTALEFDLVGVDASVANAIRRIVIAEVPTVAVENVYVWNNTSIIQDEVLAQR 134
Query: 71 LGLIPLT-SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
LGLIPL R + M+ + D D +V F L A+C + + D +
Sbjct: 135 LGLIPLAIDPRKLDMKKTPDEPPTD------LNTVVFSLIARCERRKDVKKGETDPHKIW 188
Query: 130 HSV----VPVDFVDPAGYDSTDQQRG-------IIIVKLRRGQELRLRAIARKGIGKDHA 178
V + F G D R I++ K+R GQE+ KGIGKDHA
Sbjct: 189 SGVEVLSSNLSFSSRGGQDELFGDRPPKPAIDDILVAKMRGGQEIVAELHCVKGIGKDHA 248
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
KWSP AT ++ P I D++ + E + P V I+ +G++ V +A
Sbjct: 249 KWSPVATASYRLLPTI----DILADIPPELHSKFEACFPPGV--IEQRSGRLVVANARRD 302
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
T EV++ E K V++ D FIF+VES G + +LV AIEVL K+ A
Sbjct: 303 TVSREVLRHPEFEDK---VKLGRVRDHFIFSVESAGQYRPEELVPEAIEVLLAKIRA 356
>gi|190348712|gb|EDK41218.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 151/300 (50%), Gaps = 26/300 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I L + A F+L + D S+ANA RR+MI+EVP++A + V I N+SV+ DE +AHR
Sbjct: 41 EINISHLTERTANFDLINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYS 127
+GLIPL + + D + + + ++ L C + S KDLY
Sbjct: 101 IGLIPLKVDPDLLSWVDPAQD--EKEKFTDENTIVLSLDIACTKNPHPPAGSTDPKDLYR 158
Query: 128 SDHSVVPVDFVDPAGYD----------STDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
+ H +P G TD I+I KLR GQE+ LRA GIG DH
Sbjct: 159 NAHVYARDLKFEPQGRQVDLFKNNPVVPTDPD--ILIAKLRPGQEISLRAHCILGIGSDH 216
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA 237
AK+SP +T ++ +I I E ++ E + + + P+ V I+ +T +V DA
Sbjct: 217 AKFSPVSTASYRLMSDIKI----TEPITGESAKRFQKCFPSGVIGIENDTA--FVKDARK 270
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ E GK L I D FIF VESTGA+ ++ ++ VLK K D +R
Sbjct: 271 DTVSREVLRHEEFNGKVKLGRI---RDHFIFNVESTGAMPPEEIFFKSVRVLKNKADYLR 327
>gi|149032428|gb|EDL87319.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_d
[Rattus norvegicus]
Length = 165
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 104/162 (64%), Gaps = 10/162 (6%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPVDF----VDPAGYDSTDQQ--RGIIIVKLRRG 160
L S+ V+PV DP Y D + RG+ + L G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDGRFYRGLASLALHSG 161
>gi|146412650|ref|XP_001482296.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 151/300 (50%), Gaps = 26/300 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I L + A F+L + D S+ANA RR+MI+EVP++A + V I N+SV+ DE +AHR
Sbjct: 41 EINISHLTERTANFDLINIDTSVANAFRRIMISEVPSVAAESVYIFNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYS 127
+GLIPL + + D + + + ++ L C + S KDLY
Sbjct: 101 IGLIPLKVDPDLLSWVDPAQD--EKEKFTDENTIVLSLDIACTKNPHPPAGSTDPKDLYR 158
Query: 128 SDHSVVPVDFVDPAGYD----------STDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
+ H +P G TD I+I KLR GQE+ LRA GIG DH
Sbjct: 159 NAHVYARDLKFEPQGRQVDLFKNNPVVPTDPD--ILIAKLRPGQEISLRAHCILGIGSDH 216
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA 237
AK+SP +T ++ +I I E + L+ ++ + P+ V I+ +T +V DA
Sbjct: 217 AKFSPVSTASYRLMSDIKITEPITGELAKRFQKCF----PSGVIGIENDTA--FVKDARK 270
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ E GK L I D FIF VESTGA+ ++ ++ VLK K D +R
Sbjct: 271 DTVSREVLRHEEFNGKVKLGRI---RDHFIFNVESTGAMPPEEIFFKSVRVLKNKADYLR 327
>gi|321257697|ref|XP_003193678.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
gi|317460148|gb|ADV21891.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
Length = 350
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 151/308 (49%), Gaps = 48/308 (15%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
++ L +F+L DAS+ANALRR +IAEVPT+AI+ V + N+S++ DE + HR+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 74 IPL-TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-------- 124
+PL R++ R S + + D +V F LR +C +D + KD
Sbjct: 111 VPLKIDPRSLRYRPSANSQPHEHD------TVVFDLRVRCDRRPNVDRSEKDPKKMYFDS 164
Query: 125 -LYSSDHSVVPVDFVDPAGYDSTDQQRG------------IIIVKLRRGQELRLRAIARK 171
+YS VP S DQ++ I++VKLR GQ++ L ARK
Sbjct: 165 NVYSGMLKWVP----------SGDQKKKFKGKAPKPVNDDILLVKLRPGQQVDLHCFARK 214
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--- 228
G+G DHAK+SP AT ++ P I L + E +Q + P V +I+ +
Sbjct: 215 GVGADHAKFSPVATASYRLLPHI----ILRGPIPKEHQQKFKGCFPPGVIEIEKDESGED 270
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
Q V + T EV++ E +V++ D FIF VES G +LV AI++
Sbjct: 271 QCVVKNPRKDTVSREVLRHPEFQ---DIVQLARIRDHFIFNVESAGQYSPEELVPEAIKI 327
Query: 289 LKQKLDAV 296
L K+ V
Sbjct: 328 LLGKIKDV 335
>gi|124486064|ref|YP_001030680.1| DNA-directed RNA polymerase subunit D [Methanocorpusculum labreanum
Z]
gi|124363605|gb|ABN07413.1| DNA-directed RNA polymerase, subunit D [Methanocorpusculum
labreanum Z]
Length = 275
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 143/295 (48%), Gaps = 38/295 (12%)
Query: 17 LKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 76
L D A+F + + ANALRR MI EVPT+AI+ + I N+SVL DE +AHRLGLIP+
Sbjct: 8 LDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPI 67
Query: 77 TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVD 136
++ +S R +C G+G C C+V F L + VTS DL S D +VVPV
Sbjct: 68 KTD--LSQYVPRSECSCGGEG-CPHCTVMFTLSV----EGPKMVTSGDLISMDENVVPV- 119
Query: 137 FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
I IVKL Q++ L A+A GK+HAKW P + P I I
Sbjct: 120 ------------HNNIPIVKLWENQKVVLEAVAEVNYGKEHAKWQPTLACGYSEYPVITI 167
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE------A 250
+ + + V P V ++ +T + VV+ E+ D + + E
Sbjct: 168 KD------TCDGCGKCVAECPRDVLELTKDTVSIRVVNGESKEKDCSLCRLCETACMDSG 221
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEA 305
+G+ + I A FIF VES G++ +++ A+ +K + S D +EA
Sbjct: 222 IGEDPAIIISADSTKFIFVVESDGSLPVKEIIERALLHIKSR------SSDLIEA 270
>gi|255563568|ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
gi|223538024|gb|EEF39637.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
Length = 374
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 42/311 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV++ +L D +F++ DA++ANA RR++I+E+PT+AI+ V I N+S++ DE +AHR
Sbjct: 76 KVEVIQLTKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIANNTSLIQDEVLAHR 135
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ ++ + S + D E ++ F L A C + + +YS +
Sbjct: 136 LGLIPINADPRLFEYLSAN------DTPNEKNTIVFKLHASCKRGE----PRRTVYSEEL 185
Query: 131 SVVPVDF----------VDPAGYDS-TDQQ-----------RGIIIVKLRRGQELRLRAI 168
+P P+ Y S TD+Q II+ KL GQE+ L A
Sbjct: 186 KWLPGGSQLLKESEKADSKPSTYTSFTDKQDFIPKPVSPSEDKIIVAKLGPGQEIELEAH 245
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI-DPNT 227
A KG+GK HAKWSP AT + PE+ L+E + E + + P VFDI D
Sbjct: 246 AVKGLGKTHAKWSPVATAWYRMLPEVV----LLEDIEDEIAEELTKKCPVNVFDIEDIGN 301
Query: 228 GQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNA 285
G+ V A T E I+ E + L + +D FIFT+ESTGA+ L A
Sbjct: 302 GKKRATVARPRACTLCRECIRGGEWDKRVSLRRV---KDHFIFTIESTGALPPEVLFTEA 358
Query: 286 IEVLKQKLDAV 296
++VL+ K + V
Sbjct: 359 VKVLEDKCERV 369
>gi|150951291|ref|XP_001387588.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
gi|149388472|gb|EAZ63565.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
Length = 336
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 154/298 (51%), Gaps = 21/298 (7%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I D A F+L + D ++ANA RR+MI+EVP++A + V + +N+SV+ DE +AHR
Sbjct: 43 EINISYKTDRTANFDLINIDTAIANAFRRIMISEVPSVAAEAVYMFMNTSVIQDEVLAHR 102
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYS 127
+GLIPL + M + D D E ++ L C + S K+LY
Sbjct: 103 IGLIPLRVD-PDKMNWV-DKTQSPEDRYTEDNTIVLTLDVVCTKNPHAPKNSTNPKELYR 160
Query: 128 SDHSVVPVDFVDPAGYDS--------TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ H +P G + I+I KLR GQE+ LRA G+G DHAK
Sbjct: 161 NAHVYARDLKFEPHGKQAELFKDLPVVAADPDILIAKLRPGQEISLRAHCILGVGCDHAK 220
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP +T ++ P I D++E + + + + P+ V I+ + G+ YV DA T
Sbjct: 221 FSPVSTASYRLMPVI----DIVEPIRGDSAVRFQKCFPSGVIGINAD-GEAYVKDARKDT 275
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E GK V++ K D FIF VESTGA+ ++ ++ VLK K++ +R
Sbjct: 276 VSREVLRHEEFDGK---VKLGRKRDHFIFNVESTGAMAPEEIFFKSLLVLKNKVEYLR 330
>gi|261196646|ref|XP_002624726.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595971|gb|EEQ78552.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239609550|gb|EEQ86537.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327350214|gb|EGE79071.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 380
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 159/338 (47%), Gaps = 46/338 (13%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R KV + + A F L DA++ANA RR+MIAE+P++AI+ V I N+SV+ DE
Sbjct: 48 FKRNLKVTFHKNEPYEASFSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDE 107
Query: 66 FIAHRLGLIPLT--SERAMSMRFSRDCDACDGDGQCEFC---SVEFHLRAKCHSDQTLDV 120
+AHRLGL+PLT +E +R+ R D E ++ HL +C +
Sbjct: 108 VLAHRLGLVPLTGAAEGINWLRWFRQPTEGKPDSGSELSDSNTIVLHLSVECTKNPKASA 167
Query: 121 TSKD---------LYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLR 166
+D +Y+ D + PV F +P G + I++ KLR GQ++ +
Sbjct: 168 NEEDPQKLYNHAHVYAKDITFHPVGRQEAYFPEPYGAIRSANP-DILLAKLRPGQKIDIE 226
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID-- 224
KGIG DHAK+SP AT ++ P+I I ++ +L+ + P V ID
Sbjct: 227 MHCIKGIGADHAKFSPVATASYRLLPDIRILRPILGQDALK----FARCFPKGVIGIDSV 282
Query: 225 -----PNTGQVY----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFT 269
G Y V+D T E ++ E GK L I D FIF
Sbjct: 283 SAEEASQAGSGYEGHEGEKKAVVLDPFKDTVSRECLRHEEFRGKVKLGRI---RDHFIFN 339
Query: 270 VESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADD 307
VESTG ++ L L +++VL KL RL D + D
Sbjct: 340 VESTGQFRSDVLFLESVKVL--KLKCRRLKRDLAKLAD 375
>gi|336263008|ref|XP_003346286.1| hypothetical protein SMAC_05823 [Sordaria macrospora k-hell]
gi|380093615|emb|CCC08579.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 378
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 152/301 (50%), Gaps = 40/301 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F L DAS+ANA RR+MIA++PT+AI+ + + N+SV+ DE + HRLGLIP T +
Sbjct: 75 AQFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKE 134
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVVP-VDF 137
F + G+ C++ +VE L+ KC ++Q SKD LY + H + F
Sbjct: 135 GLHNFLKWYKK--GETPCDYNTVELELKVKCENNQNAPTDSKDPKELYHNAHVYAKDIKF 192
Query: 138 VDPAG----YDSTDQ-----QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
V P G Y S + I++ K+R GQE+ L KG+G DHAK+SP AT ++
Sbjct: 193 V-PKGRQAKYFSGENVIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASY 251
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY---------- 231
P I I +E + + + + + P V ++ T G Y
Sbjct: 252 RLMPTITI----LEPILGRDAEKFQKCFPKGVIGLEKVTKEEAKQKGSGYEGHEGELKAV 307
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V+DA T E ++ E K V++ + D FI+ VESTG ++ + L +I LK+
Sbjct: 308 VLDAMRDTVSRECLRHDEFKDK---VKLGRRRDHFIYLVESTGQWESDAIFLESIAHLKE 364
Query: 292 K 292
K
Sbjct: 365 K 365
>gi|225677934|gb|EEH16218.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb03]
Length = 345
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 46/308 (14%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 79
A F L DAS+ANA RR++IAE+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 29 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 88
Query: 80 RAMSMRFSR---DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYS 127
+R+ R + D G ++ ++ HL KC + +D +Y+
Sbjct: 89 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYA 148
Query: 128 SDHSVVPVD-----FVDP-AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
D + PV F +P G T+ I++ KLR GQ++ + KGIG DHAK+S
Sbjct: 149 KDITFQPVGRQEAYFPEPDGGIRPTNPD--ILLAKLRPGQKIDIEMHCVKGIGADHAKFS 206
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ------------ 229
P AT ++ P+I I ++ +++ + P V I+ T +
Sbjct: 207 PVATASYRLLPDIRILRPILGKDAVK----FAGCFPEGVIGIETVTAEEASQRGSGYEGH 262
Query: 230 -----VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
V+D T E ++ E GK L I D FIF VESTG ++ L L
Sbjct: 263 EGAKKAVVLDPFKDTVSRECLRHEEFQGKVKLGRI---RDHFIFNVESTGQFRSDVLFLE 319
Query: 285 AIEVLKQK 292
+++VLK K
Sbjct: 320 SVKVLKLK 327
>gi|242064360|ref|XP_002453469.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
gi|241933300|gb|EES06445.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
Length = 370
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 156/314 (49%), Gaps = 47/314 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++I L +D +F++ DAS+ANA RR++IAEVPT+AI+ + + N+SV+ DE ++HR
Sbjct: 71 KIEINRLTEDDMEFDMIGIDASIANAFRRILIAEVPTMAIEKIFMVDNTSVIADEVLSHR 130
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDL---- 125
LGLIPL ++ + S + D E +V + L C Q + V S +L
Sbjct: 131 LGLIPLRADPRLFDYIS------ENDVPNERNTVVYKLHVSCPKGSQRITVKSSELEWLP 184
Query: 126 -----------YSSDHSVVPVDFV--------DPAGYDSTDQQRGIIIVKLRRGQELRLR 166
S D F +P G D I I +L GQ + L
Sbjct: 185 EGSQLSMAAPAQSGDKQKTFTSFSQSQKEILEEPLGVKFKD----ITIARLGPGQAIELE 240
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID-- 224
A A KG+GK HAKWSP AT + PE+ I +D + ++ + V+ P VFDI+
Sbjct: 241 AHAVKGVGKVHAKWSPVATAWYRMLPEVVILKD----IEGDDAEELVKKCPVNVFDIEDL 296
Query: 225 PNTGQVYVV-DAEAYTYDDEVIKKAEAMGKPG-LVEIYAKEDSFIFTVESTGAIKASQLV 282
N G+ VV A T E + MG G VE+ D FIFT+ESTGA+ L
Sbjct: 297 GNGGKRAVVAKPRACTLCRECV-----MGPNGNQVELRRVRDHFIFTIESTGALPPEVLF 351
Query: 283 LNAIEVLKQKLDAV 296
A+++L++K + V
Sbjct: 352 TEAVKILEEKCERV 365
>gi|396081532|gb|AFN83148.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
romaleae SJ-2008]
Length = 240
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 102/178 (57%), Gaps = 19/178 (10%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
+ EL + KF L + ANALRR++I+EVPTIAID+VEIE N++VL DE +AHRLGL
Sbjct: 6 VEELTPERIKFTLSNATVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLAHRLGL 65
Query: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVV 133
+P+ S+R + + + C G C CSV F + D V+++D+ + VV
Sbjct: 66 VPIYSKRELKYK-----EECSCSGFCSECSVVFEIDIVHTEDALRVVSARDIVCDEGDVV 120
Query: 134 PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
+ G +I KL R Q L+ R I RKGIGK HAKWSP + ++F Y+
Sbjct: 121 --------------IKSGPMITKLARDQGLKARCIGRKGIGKIHAKWSPVSAISFEYD 164
>gi|170087654|ref|XP_001875050.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650250|gb|EDR14491.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 353
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 159/318 (50%), Gaps = 29/318 (9%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+++ KVK++ L + F+L DAS+ANA RR+MIAEVPT+ I+ V + N+SV+ DE
Sbjct: 40 FKKNLKVKVQRLSNLSIDFDLVGVDASIANAFRRIMIAEVPTVCIENVYVWDNTSVVVDE 99
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL--DVTSK 123
++ RLGLIPL + + + D + ++ F ++ C + D T
Sbjct: 100 VLSQRLGLIPLNIDPDLIV-----MKETSADQATDRNTIVFEIKLTCERNPKAKKDSTDP 154
Query: 124 DLYSSDHSVVPVDFV-DP--------AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIG 174
D +H V+ V P AG I++ KLR GQ++ + A KG+G
Sbjct: 155 DESYINHEVLSSHLVWKPAGEQEEVFAGNPPAPTNPNIVLAKLRPGQDVHVELHAMKGVG 214
Query: 175 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVD 234
KDHAK+ P AT ++ P I I + + L + ++ + SP V IDP T +V V +
Sbjct: 215 KDHAKYCPVATASYRLLPHIKIKKPIPPHLGEKFQKCF---SPG-VIKIDPRTKEVSVDE 270
Query: 235 AEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
T EV++ E VE+ D F+F VES GA +++ AI+V+++K
Sbjct: 271 HNVRKDTVSREVLRHPEFKDS---VELSRVRDFFLFNVESEGAYSPERMLTEAIKVMREK 327
Query: 293 LDAVRLSE----DTVEAD 306
L +R + D VE D
Sbjct: 328 LKKIRQAAEALYDQVEVD 345
>gi|388582543|gb|EIM22847.1| RNA polymeras-like protein I subunit hRPA39, partial [Wallemia sebi
CBS 633.66]
Length = 362
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 155/303 (51%), Gaps = 23/303 (7%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
+ + +D +F+L D S+ANALRRVMIAEVPT+A++ V + N+SV++DE +AHRLGL
Sbjct: 49 VNAVAEDEIEFDLIGVDPSIANALRRVMIAEVPTVAVENVFVFNNTSVMHDEVMAHRLGL 108
Query: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV--TSKDLYSSDHS 131
+P+ + F + GD + ++ F L+ C + T D +H
Sbjct: 109 VPILFDAERLEEFQK------GDSPNDQNTIVFTLQVACTRKAKVAAGETDPDKIYENHK 162
Query: 132 VVPVDF---------VDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
V DF DP D+ + I+I KLR GQ + L KG+G+DHAK+
Sbjct: 163 VYSKDFKWVPQGGQASDPLFTDNPPRVAYPEILITKLRPGQSIDLELHCVKGLGQDHAKF 222
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPAAT ++ P + +++ + +S E S +V + + + V+ T
Sbjct: 223 SPAATASYRLLPTVKLHQPI-KSEHAELFASCFSEGVVEVRENKKGEKEAHYVNPRKDTV 281
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
EV++ E G+VE+ D FIF +E+TGA+K+ ++ + V+K K+ +R
Sbjct: 282 SREVLRHPEF---DGVVELGRIRDHFIFNIETTGAVKSVDMLPRSCNVIKSKVQKIREGL 338
Query: 301 DTV 303
+T+
Sbjct: 339 NTI 341
>gi|221040824|dbj|BAH12113.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 92/131 (70%), Gaps = 4/131 (3%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL D+ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L +C+ DQT VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTF---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 125 LYSSDHSVVPV 135
L S+ V+PV
Sbjct: 120 LISNSPRVIPV 130
>gi|50307479|ref|XP_453719.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642853|emb|CAH00815.1| KLLA0D14861p [Kluyveromyces lactis]
Length = 334
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 151/310 (48%), Gaps = 47/310 (15%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+I L + F+L D S+ANA RR+MI+EVP++A + V N+SVL DE +AHR+
Sbjct: 42 VQIESLDEREVNFDLVHVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVLQDEVLAHRI 101
Query: 72 GLIPL--------------------TSERAMSMRFSRDCD-ACDGDGQCEFCSVEF---H 107
GL+PL T E + M + C D CE V + H
Sbjct: 102 GLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLNVKCTRNPDAPKDCEDPKVLYRNAH 161
Query: 108 LRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRA 167
+ A+ D + K + + PV DP I++ KLR GQE+ LRA
Sbjct: 162 IYAR---DLKFEPQGKQV--EQFAKCPVVAADP----------DILLAKLRPGQEISLRA 206
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT 227
GIG DHAK+SP +T ++ P I I + ++ ++ + +V+ P V D++
Sbjct: 207 HCILGIGADHAKFSPVSTASYRLLPHIQIT----QPITGDDAKKFVKCFPKGVADVN-EK 261
Query: 228 GQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
G+ Y+ D T EV++ E GK V++ D FIF VES+GA+ ++ ++
Sbjct: 262 GEAYIKDPRKDTVSREVLRHDEFQGK---VKLGRVRDHFIFNVESSGAMTPEEIFFKSVR 318
Query: 288 VLKQKLDAVR 297
+LK K + ++
Sbjct: 319 ILKNKAEYLK 328
>gi|83282536|ref|XP_729812.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Plasmodium yoelii yoelii 17XNL]
gi|23488700|gb|EAA21377.1| DNA-directed RNA polymerases i and iii 40 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 286
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 150/307 (48%), Gaps = 38/307 (12%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI + +++ E+++ + S+ANALRR+MI+EVPTIAI+ V I N+ V+ DE + HRL
Sbjct: 1 MKIIKNEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRL 60
Query: 72 GLIPLTSERAMSMRFSRDCDACD--------GDGQCEFCSVEFHLRAKCHSDQTLDVTS- 122
GLIP F D D + + C FC F L KC+S +
Sbjct: 61 GLIP----------FKFDADLLNYKDPYEKYNNLNC-FC---FKLHVKCNSINNNKNGNE 106
Query: 123 --KDLYSSDHSVVPVDFVDPAGYDSTDQQR---GIIIVKLRRGQELRLRAIARKGIGKDH 177
+ +YS D P++ +++ + I+I KL GQE+ L KGIGK H
Sbjct: 107 NYQCIYSKDLKWCPLNEEQKKKFENNPPKVVEDNILITKLGSGQEIELICFLEKGIGKTH 166
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA 237
AKWSP T + P N D+ E + EK+ V P VFDI+ +G + +
Sbjct: 167 AKWSPVCTAVYKMFPS--FNFDVHEKFTNYEKKDLVTICPKNVFDIE-ESGNLVAKNPLD 223
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ I+K P + ++ FIFTVESTG ++ + A+ +LK K+ V+
Sbjct: 224 CSSCRACIEKY-----PQKITFQKTKNHFIFTVESTGCFPSADIFKKALNILKVKVINVK 278
Query: 298 --LSEDT 302
L E T
Sbjct: 279 EMLEEQT 285
>gi|406606450|emb|CCH42224.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 295
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 144/282 (51%), Gaps = 29/282 (10%)
Query: 30 DASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 89
D S++NA RR+MI+EVP++A + V I N+SV+ DE +AHR+GLIPL + +
Sbjct: 23 DTSISNAFRRIMISEVPSVAAEQVYIFNNTSVIQDEVLAHRIGLIPLKIDPDLLNWVDNS 82
Query: 90 CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSSDHSVVPV----- 135
D + D + +V L C + S D +Y+ D P
Sbjct: 83 VD--ESDKFTDANTVVMTLDVSCTKNPNAPKNSTDPKELYRNSSIYARDLKFEPQGNQLE 140
Query: 136 DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIH 195
+F +P D I++ KLR GQE+ LR GIG DHAK+SP +T ++ P I
Sbjct: 141 NFKNPIEPADPD----ILLAKLRPGQEISLRIHCVLGIGSDHAKFSPVSTASYRLLPTI- 195
Query: 196 INEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPG 255
D++E + ++ + + + PT V I N G+ +V D+ T EV++ E GK
Sbjct: 196 ---DIIEPIRGDDAKKFQKCFPTGVIGI--NNGEAFVKDSRRDTVSREVLRHEEFNGK-- 248
Query: 256 LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
V++ K + FIF VESTGA+ ++ ++ +LK K + +R
Sbjct: 249 -VKLGRKRNHFIFNVESTGAMSPEEIFFKSVRILKNKAEYLR 289
>gi|302693813|ref|XP_003036585.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
gi|300110282|gb|EFJ01683.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
Length = 354
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 162/306 (52%), Gaps = 30/306 (9%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R KVK++ L + +F+L DAS+ANA RR+MIAEVPTIAI+ V + N+SV+ DE
Sbjct: 40 FKRNLKVKVQRLSNRSIEFDLVGVDASIANAFRRIMIAEVPTIAIENVYVWDNTSVIVDE 99
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVT-S 122
+AHRLGL+PL + M+ +D D D ++ F L C S + + T
Sbjct: 100 VLAHRLGLVPLNVD-PDQMQPRKDI-PTDRD------TIIFDLAVACTRKSHSSANATEP 151
Query: 123 KDLYSSDHSVV-------PVDFVDP--AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
+DLY +H V+ PV + A I++ KLR GQ + + A KG+
Sbjct: 152 EDLY-DNHEVLSSHLKWRPVGEQEEVFANKPPAPTNPNIVLAKLRPGQAVHMELHAVKGV 210
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV- 232
GKDHAK+SP AT ++ P I I + + L+ + ++ + SP V +DPNT V V
Sbjct: 211 GKDHAKFSPVATASYRLLPHIKIKKPIPPELADKFQKCF---SPG-VIRVDPNTKAVSVD 266
Query: 233 -VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
+ T EV++ E VE+ D F+F+VES A L+ +I++L++
Sbjct: 267 PKNVRRDTVSREVLRHPEFQDS---VELSRVRDHFLFSVESESAYAPEWLLAESIKILRE 323
Query: 292 KLDAVR 297
K+ V+
Sbjct: 324 KVKEVK 329
>gi|357121301|ref|XP_003562359.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
rpac1-like [Brachypodium distachyon]
Length = 360
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 151/309 (48%), Gaps = 39/309 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+KI L +D +F++ DAS+ANA RR++IAEVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 63 KIKINRLTEDDMEFDMIGVDASIANAFRRILIAEVPTMAIEKVFMVDNTSVIADEVLSHR 122
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-SDQTLDVTSKDL---- 125
LGLIPL ++ R D D E ++ + L C Q L V S L
Sbjct: 123 LGLIPLDAD-------PRLFDHISDDVPNERNTIVYKLHVSCEKGSQRLTVKSGQLEWLP 175
Query: 126 --------------YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
++ + +G + + I I +L GQ + L A A K
Sbjct: 176 EGSQLLMASAAQGEKQKTYTSFGQSQKNISGRSIGVKYKDITIARLGPGQAIELEAHAVK 235
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI-DPNTG-- 228
G+GK HAKWSP AT + PE+ L++ + E + V+ P VFDI D G
Sbjct: 236 GVGKVHAKWSPVATAWYRMLPEVV----LLKEIKDGEAEELVKKCPVNVFDIEDLGNGAK 291
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPG-LVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
+ V A T E + MG G VE+ D FIFT+ESTGA+ L A++
Sbjct: 292 RAVVARPRACTLCRECV-----MGPTGEQVELRRVRDHFIFTIESTGALPPEVLFTEAVK 346
Query: 288 VLKQKLDAV 296
+L++K + V
Sbjct: 347 ILEEKCERV 355
>gi|296422447|ref|XP_002840772.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636995|emb|CAZ84963.1| unnamed protein product [Tuber melanosporum]
Length = 377
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 157/304 (51%), Gaps = 25/304 (8%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R +VK +++F+L TDA++AN LRR+MIAEVPT+AI+ V + N+S++ DE
Sbjct: 42 FRRTFRVKFFRNTPLFSQFDLIHTDAAIANTLRRIMIAEVPTLAIESVYVSNNTSIIQDE 101
Query: 66 FIAHRLGLIPLTSERAMSMRFS---RDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDV 120
+AHRLGLIPL ++ S R D+ + E +V +L+ C + D
Sbjct: 102 VLAHRLGLIPLCGDKDALKGLSWYLRGEDSAPREPTDE-DTVVLYLKKACERNPDAKKTD 160
Query: 121 TSKDLYSSDHSVVPVDFV-DPAGYD----STDQQRG----IIIVKLRRGQELRLRAIARK 171
T D +H+V D + +PAG + D R I+I KLR GQE+ L K
Sbjct: 161 TDPDKLYINHNVYASDILFEPAGRQIKSFAHDPVRAANPDILIAKLRPGQEIDLTMHCIK 220
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT---G 228
GIG+DHAK+SP AT ++ P+I I + + + + + P V I
Sbjct: 221 GIGQDHAKFSPVATASYRLLPDIKIKKPIRGKAA----ERFAACFPKGVIAIRERKDGEK 276
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
+ V + T EV++ E G+VE+ D FIF+VESTG A ++ L+A+
Sbjct: 277 EAVVDNVRNDTVSREVLRHDEFK---GIVELGRVRDHFIFSVESTGQFDADEIFLSAVGT 333
Query: 289 LKQK 292
LK K
Sbjct: 334 LKAK 337
>gi|213513431|ref|NP_001134298.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
gi|209732188|gb|ACI66963.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
Length = 353
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 160/301 (53%), Gaps = 27/301 (8%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+Q+ ++ + ++ + +F++ DA++ANA RR+++AEVPT+A++ V I N+S++ DE
Sbjct: 52 FQKNFRIDVVQMDETSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLIYNNTSIIQDE 111
Query: 66 FIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
+AHRLGLIP+ ++ R R +A D +G E +++ L+ KC + S D
Sbjct: 112 ILAHRLGLIPIKADPRLFEYR-----NAGDEEG-TEIDTIQLQLKIKCTRNPRATKDSAD 165
Query: 125 ---------LYSSDHSVVPV-DFVDPAGYDSTDQQRG-IIIVKLRRGQELRLRAIARKGI 173
+YS D P+ + D + G I++ +LR GQEL + KGI
Sbjct: 166 PRELYLNHMVYSKDMKWAPIGNQADVFADANIGPVHGDILLAQLRPGQELDIVMHCVKGI 225
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY-- 231
G+DHAK+SP AT ++ PEI LME++ E+ + V +++ + G+V
Sbjct: 226 GQDHAKFSPVATASYRLLPEI----TLMETVEGEKAERLKRCFSPGVIEVENHGGKVVAK 281
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
VV++ T EV++ + L + D FIF+VESTG + LV AI+VL
Sbjct: 282 VVNSRLDTCSREVLRHDDLKNAVKLARV---RDHFIFSVESTGILAPDVLVTEAIKVLMT 338
Query: 292 K 292
K
Sbjct: 339 K 339
>gi|380478357|emb|CCF43643.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 372
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 153/320 (47%), Gaps = 54/320 (16%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR++IAE+PTIAI+ V IE N+SV+ DE +AHRLGLIP T
Sbjct: 65 ASFSLVGVDASIANAFRRILIAEIPTIAIENVYIENNTSVIQDEVLAHRLGLIPFTGNPE 124
Query: 82 MSMRFSRDCDACD--GDGQCEFCSVEFHLRAKC--HSDQTLDVTSKD-------LYSSDH 130
+F + + G G ++ +V+ LR +C +SD T D +Y+ D
Sbjct: 125 GIHKFLKWYRKPEQGGKGSFDYNTVQLRLRIECTRNSDAAPGETDPDKAFHNASVYAKDI 184
Query: 131 SVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
VP D + P D I++ KLR GQ + L KGIG DHAK+
Sbjct: 185 EFVPTGRQLEFFSGEDAIRPVNPD-------ILVAKLRPGQCIELDMHMHKGIGADHAKF 237
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT------------G 228
SP AT ++ P I I ++ ++ + + + P V I+ T G
Sbjct: 238 SPVATASYRLMPTITITRPILG----QDAEKFAKCFPQGVIGIEKVTKKEAAVAGSGFEG 293
Query: 229 Q-----VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
Q V DA T E ++ E GK V++ D FIF++ESTG + +L L
Sbjct: 294 QEGEKKAVVKDAMKDTVSRECLRHPEFEGK---VKLGRVRDHFIFSIESTGQWDSDELFL 350
Query: 284 NAIEVLKQKLDAVRLSEDTV 303
+++ K + +RL + +
Sbjct: 351 ESVKQFKTR--CMRLEQQVI 368
>gi|300681098|sp|P0CG28.1|RPOD_METAC RecName: Full=DNA-directed RNA polymerase subunit D
Length = 266
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 138/283 (48%), Gaps = 32/283 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I EL D AKF L + + AN +RR M+A+VPT+AI+ V + N+SVL DE +A R
Sbjct: 4 EVDILELSDRSAKFVLSNVSTAFANGIRRAMVADVPTLAIEYVNLYDNTSVLYDEQLALR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPL ++ + +CD C G+G C C V L A + V S+DL SSD
Sbjct: 64 LSLIPLATDIETYLP-QAECDVCGGEG-CPACEVSLTLSA----EGPGTVYSRDLISSDP 117
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
+ P D P IV+L++GQ+L L AIA G G+D KW +
Sbjct: 118 KIQPADPNVP-------------IVELKKGQKLVLEAIAHMGYGRDSVKWQAGVACGYKN 164
Query: 191 EPEIHI-NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
P I I N D + E P + ++ ++ AE + + E
Sbjct: 165 MPVITIENCDACGHCAAE--------CPKGIISVEEAGAKI----AEEDIMKCSICRLCE 212
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ +++ E+SF+FT+ES G+ A LVLNA V+K K
Sbjct: 213 QVCDINAIKVDFYENSFVFTMESDGSYTAKDLVLNAANVIKGK 255
>gi|409045867|gb|EKM55347.1| hypothetical protein PHACADRAFT_161317 [Phanerochaete carnosa
HHB-10118-sp]
Length = 364
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 155/307 (50%), Gaps = 28/307 (9%)
Query: 13 KIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
+++ L +F+L DAS+ANA RR+MIAEVPTIAI+ V + N+SV++DE +AHR+G
Sbjct: 50 EVQRLSQWSIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWNNTSVIHDEVLAHRIG 109
Query: 73 LI-PLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH---SDQTLDVTSKDLYSS 128
L+ P + +R A D ++ F L+ C + + ++ S
Sbjct: 110 LVQPSADPSTLEIRTPTGFGATPSDRN----TLVFRLQVTCERAPKGSGKEYINDEVKSG 165
Query: 129 DHSVVP------VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
D VP V +P G + D I++ KLR GQE+ + A KG+GK+HAKWSP
Sbjct: 166 DLVWVPQGEQEEVFANNPPGPTNKD----IVLAKLRPGQEIDMELHAIKGVGKEHAKWSP 221
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
AT ++ P I +N L +K + S D D G+++ +D D
Sbjct: 222 VATASYRLHPLILLNPQKPVPTHLAKKFAGCFSPGVVQVDAD---GEIW-IDLHGMRKDS 277
Query: 243 ---EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
EV++ E G VE+ D FIF VES G +L+ A++V+++K+ ++R +
Sbjct: 278 VSREVLRHEEFH---GCVELKRVRDWFIFNVESEGPYAPERLLPEAVKVMREKVASIRAA 334
Query: 300 EDTVEAD 306
+ AD
Sbjct: 335 AQALLAD 341
>gi|367015666|ref|XP_003682332.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
gi|359749994|emb|CCE93121.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
Length = 335
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 150/297 (50%), Gaps = 20/297 (6%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+I L + A F+L D S+ANA RR+MI+EVP++A + V N+SV+ DE +AHR+
Sbjct: 42 VQIESLTEREANFDLIHIDTSIANAFRRIMISEVPSLAPEHVYFLNNTSVIQDEVLAHRI 101
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSD 129
GL+PL + M D + + + ++ L C + D D T + +
Sbjct: 102 GLVPLKVDPDMLTWV--DSTLPEEERFTDENTIVLTLNVTCTRNPDAPKDCTDPKILYRN 159
Query: 130 HSVVPVDF-VDPAGYDS--------TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
SV D +P G + I++ KLR GQE+ LRA G+G DHAK+
Sbjct: 160 SSVYAHDLKFEPQGRQAELFAKCPVVPADPDILLAKLRPGQEISLRAHCILGVGGDHAKF 219
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP AT ++ P HIN + + ++ E + + + V DID +TG+ V DA T
Sbjct: 220 SPVATASYRLLP--HIN--ITKPITGESAKKFQKCFSPGVIDIDESTGEAVVKDARRDTV 275
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
EV++ E V++ D FIF VESTGA+ ++ ++ +LK K + ++
Sbjct: 276 SREVLRHEEFADS---VKLGRVRDHFIFNVESTGAMTPEEIFFKSVRILKNKAEYLK 329
>gi|365982085|ref|XP_003667876.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
gi|343766642|emb|CCD22633.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
Length = 335
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 146/292 (50%), Gaps = 20/292 (6%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+I L + A F+L + D SMANA RR+MI+EVP++A + V N+SV+ DE +AHR+
Sbjct: 42 VQITSLSEREANFDLINIDTSMANAFRRIMISEVPSVAAEYVYFLTNTSVIQDEVLAHRI 101
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSD 129
G+IPL + M D + + + +V L KC + + D T + +
Sbjct: 102 GMIPLKVDPDMLSWI--DTSLSEEEKFTDDNTVVMSLNIKCTRNLNAPKDCTDPKILYHN 159
Query: 130 HSVVPVDF-VDPAGYD--------STDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
SV D +P G I++ KLR QE+ LR G+G DHAK+
Sbjct: 160 SSVYAKDLKFEPQGKQVETFAKCPVVPSDPDILLAKLRPDQEISLRVHCILGVGGDHAKF 219
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP +T ++ P I+I + + +++ ++ ++ V I+ TG+ YV DA T
Sbjct: 220 SPVSTASYRLLPHINILKPITGEQAIKFQKCFLPG----VIGINEETGEAYVKDARKDTV 275
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
EV++ E K L I D FIF VESTGA+ ++ ++ +LK K
Sbjct: 276 SREVLRHEEFNDKVKLGRI---RDHFIFNVESTGAMTPEEIFFKSVRILKNK 324
>gi|321259555|ref|XP_003194498.1| RNA polymerase II subunit 3 [Cryptococcus gattii WM276]
gi|317460969|gb|ADV22711.1| RNA polymerase II subunit 3, putative [Cryptococcus gattii WM276]
Length = 377
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 146/319 (45%), Gaps = 64/319 (20%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P++ +R L + A F L + + AN+LRRVM+A+VPTIAID V N+S L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFTQNTSPLADEMIAH 84
Query: 70 RLGLIPLTSER-AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD---QTLDVTSKDL 125
RLGLIPL S + +R++RDCD +G C +C V L+ + Q + VTS L
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKVTFSGNDGEQFMRVTSDML 141
Query: 126 YS-------------------SDHSVVPVDFVDP-------AGYDSTDQQRGIIIVKLRR 159
S+ + ++ DP G S I+I K+ +
Sbjct: 142 EVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGLPCGKGNPSIPP---ILIAKMGK 198
Query: 160 GQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTK 219
GQE+ + A KGI K HAKWSP +TV F Y+P + +E+ W SS
Sbjct: 199 GQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHT-THWFETDERAEWPLSS-NA 256
Query: 220 VFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKAS 279
F+ PN AE + Y+ A +F F+ ES G+I
Sbjct: 257 AFETPPNP-------AEPFDYN-------------------AVPSTFYFSAESVGSIPVR 290
Query: 280 QLVLNAIEVLKQKLDAVRL 298
+V +++L + L V L
Sbjct: 291 SVVEQGLDLLIEGLANVVL 309
>gi|440800830|gb|ELR21864.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 350
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 148/291 (50%), Gaps = 23/291 (7%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+L DA +ANA RR++++E+PT+AI+ V I N+S++ DE +AHRLGLIP+ +
Sbjct: 73 FDLIGVDAPVANAFRRILLSEIPTMAIEHVWIHNNTSIIQDEVLAHRLGLIPIKVD-PRK 131
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFV-DPAG 142
F + G+ + + ++ F L+ +C + + + + V D + +P G
Sbjct: 132 FEFKK-----PGEEETDETTLVFKLKVRCTRSNNTNPQNPEEAYVNSKVYSRDLIWEPVG 186
Query: 143 YDST----DQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI 194
+ D R I+I KLR GQE+ + KG GK+HAKWSP +T + P+I
Sbjct: 187 GQAELFADDPPRPVHDDILIAKLRPGQEIEVECRCAKGEGKEHAKWSPVSTAYYRLLPDI 246
Query: 195 HINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKP 254
+D +E + V P VFDI+ ++G+ YV + T E I++ G
Sbjct: 247 KFVKDFKG----QEAKKLVAKCPMNVFDIE-DSGKAYVKNQRNCTMCRECIRED---GWD 298
Query: 255 GLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEA 305
+++ +D FIF++ESTG + + L A++V K V D + A
Sbjct: 299 KRIKLLRVKDHFIFSIESTGILPPNVLFEEAVKVFMAKCHTVLTELDNLHA 349
>gi|350297001|gb|EGZ77978.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2509]
Length = 378
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 153/301 (50%), Gaps = 40/301 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F L DAS+ANA RR+MIA++PT+AI+ + + N+SV+ DE + HRLGLIP T +
Sbjct: 75 AQFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKE 134
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVVP-VDF 137
F + G+ C++ +VE L+ KC ++++ SKD LY + H + F
Sbjct: 135 GLHNFLKWYKK--GETPCDYNTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKF 192
Query: 138 VDPAG----YDSTDQ-----QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
V P G Y S + I++ K+R GQE+ L KG+G DHAK+SP AT ++
Sbjct: 193 V-PKGRQAKYFSGENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASY 251
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY---------- 231
P I I +E + + + + + P V ++ T G Y
Sbjct: 252 RLMPTITI----LEPILGRDAEKFQKCFPEGVIGLEKVTKEEAKKKGSGYEGHEGELKAV 307
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V+DA T E ++ E K V++ + D FI+ VESTG ++ + L +I LK+
Sbjct: 308 VLDAMRDTVSRECLRHDEFKDK---VKLGRRRDHFIYLVESTGQWESDAIFLESIAHLKE 364
Query: 292 K 292
K
Sbjct: 365 K 365
>gi|171696332|ref|XP_001913090.1| hypothetical protein [Podospora anserina S mat+]
gi|170948408|emb|CAP60572.1| unnamed protein product [Podospora anserina S mat+]
Length = 372
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 151/305 (49%), Gaps = 35/305 (11%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR+MIA+VPT+AI+ V + N+SV+ DE +AHRLGLIP T R
Sbjct: 64 ASFSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPFTGGRE 123
Query: 82 MSMRFSRDC-DACDGD-GQC-EFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVVPV 135
F + +GD +C +F +V L KC ++ D D LY H
Sbjct: 124 GLTDFLKWYRKPANGDPAECKDFNTVALELNVKCEHNENADPNETDPTKLYHHAHVYAKD 183
Query: 136 DFVDPAG-----YDSTDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
P G + D R I+I KLR GQE+ ++ KG+G DHAK+SP AT
Sbjct: 184 IVFKPIGRQVDYFSGEDIIRPVNPDILIAKLRPGQEINVQMHMHKGVGSDHAKFSPVATA 243
Query: 187 TFMYEPEIHINEDLMES-------------LSLEEKQSWVESSPTKVFDIDPNTGQV--Y 231
++ P I I + ++ + LE+ + E + K + + G++
Sbjct: 244 SYRIMPTITITQPILGRDAEKFQRCFPKGVIGLEKVTA--EEAAQKGSGYEGHEGELKAV 301
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
VVD ++ T E ++ E K V++ + D FI+ VESTG K+ + L ++ LK
Sbjct: 302 VVDPKSDTVSREALRHEEFKDK---VKLGRRRDHFIYLVESTGQWKSDAIFLESVSHLKA 358
Query: 292 KLDAV 296
K A+
Sbjct: 359 KAKAL 363
>gi|85119573|ref|XP_965664.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
gi|28927476|gb|EAA36428.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
Length = 378
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 153/301 (50%), Gaps = 40/301 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F L DAS+ANA RR+MIA++PT+AI+ + + N+SV+ DE + HRLGLIP T +
Sbjct: 75 AQFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKE 134
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVVP-VDF 137
F + G+ C++ +VE L+ KC ++++ SKD LY + H + F
Sbjct: 135 GLHNFLKWYKK--GETPCDYNTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKF 192
Query: 138 VDPAG----YDSTDQ-----QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
V P G Y S + I++ K+R GQE+ L KG+G DHAK+SP AT ++
Sbjct: 193 V-PKGRQAKYFSGENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASY 251
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY---------- 231
P I I +E + + + + + P V ++ T G Y
Sbjct: 252 RLMPTITI----LEPILGRDAEKFQKCFPEGVIGLEKVTKEEAKKKGSGYEGHEGELKAV 307
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V+DA T E ++ E K V++ + D FI+ VESTG ++ + L +I LK+
Sbjct: 308 VLDAMRDTVSRECLRHDEFKDK---VKLGRRRDHFIYLVESTGQWESDAIFLESIAHLKE 364
Query: 292 K 292
K
Sbjct: 365 K 365
>gi|328866801|gb|EGG15184.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 355
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 162/312 (51%), Gaps = 39/312 (12%)
Query: 5 SYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
S +RF K +K+ + K D+ FE+ DA +ANALRR++IAE+PT+AI+ V I N+S+
Sbjct: 61 SLERFKKNFQIKVLQDKPDHLVFEMIGVDAPIANALRRILIAEIPTMAIEKVFIINNTSI 120
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMR-FSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD 119
L DE +AHRLGLIP+ + R + + S++ A D ++ F L +C+ D+ +
Sbjct: 121 LQDEVLAHRLGLIPIKVDPRKFNFKQASKEYTAED--------TLIFKLNVRCYKDENGE 172
Query: 120 -----VTSKDLY---SSDHSVV----PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRA 167
VTS L + D + P DF P D I IVKLR GQ + ++
Sbjct: 173 TVNGTVTSGQLKWEPTEDQESMFGENPEDFPRPVHDD-------IPIVKLRPGQTVDIQL 225
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT 227
K IG++H KWSP T ++ P+I ++ + E+ ++ + P VFDI+ ++
Sbjct: 226 YCEKNIGREHIKWSPVGTASYRLMPDITVDSSKFDKKQAEKLKA---TCPKNVFDIE-DS 281
Query: 228 GQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
QV T E I+ E +V++ D FI+++ES GA+ L AI+
Sbjct: 282 YQVIAARPLDCTMCRECIRDPEF---ENVVKLERIRDHFIYSIESLGALPPKVLFQEAIK 338
Query: 288 VLKQKLDAVRLS 299
+L +K D + S
Sbjct: 339 ILIEKCDDIENS 350
>gi|45187904|ref|NP_984127.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|44982688|gb|AAS51951.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|374107343|gb|AEY96251.1| FADR031Cp [Ashbya gossypii FDAG1]
Length = 364
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 152/303 (50%), Gaps = 21/303 (6%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
++R V+I+ L + A F+L D S+ANA RR+MI+EVP++A + V N+SV+ DE
Sbjct: 66 FRRTMDVQIKSLDEREANFDLLRVDTSIANAFRRIMISEVPSVAPEYVYFFNNTSVIQDE 125
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS--- 122
+AHR+GL+PL + M + + + + +V L KC + S
Sbjct: 126 VLAHRIGLVPLKVDPDMLTWVDKSLP--EAERFTDENTVVLSLNVKCTHNPDAPKGSTDP 183
Query: 123 KDLYSSDHSVVPVDFVDPAGYD--------STDQQRGIIIVKLRRGQELRLRAIARKGIG 174
K+LY + H +P G I++ KLR GQE+ LR GIG
Sbjct: 184 KELYRNAHIYARDLKFEPQGKQLETFAKCPVVPADPDILLAKLRPGQEISLRVHCILGIG 243
Query: 175 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVD 234
DHAK+SP AT ++ P I+I +E ++ + + +V+ P V I+ G+ +V D
Sbjct: 244 SDHAKFSPVATASYRLMPYINI----VEPITGPDAEKFVKCFPPGVAAIN-EKGEAFVQD 298
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
A T EV++ E K V++ D FIF VES GA+ ++ ++ +LK K +
Sbjct: 299 ARKDTVSREVLRHPELEQK---VKLGRVRDHFIFNVESAGAMTPEEIFFKSVRILKNKAE 355
Query: 295 AVR 297
++
Sbjct: 356 YLK 358
>gi|336464897|gb|EGO53137.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2508]
Length = 378
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 152/301 (50%), Gaps = 40/301 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F L DAS+ANA RR+MIA++PT+AI+ + + N+SV+ DE + HRLGLIP T +
Sbjct: 75 AQFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKE 134
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVVP-VDF 137
F + G+ C++ +VE L+ KC +++ SKD LY + H + F
Sbjct: 135 GLHNFLKWYKK--GETPCDYNTVELELKVKCENNENAPADSKDPKELYHNAHVYAKDIKF 192
Query: 138 VDPAG----YDSTDQ-----QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
V P G Y S + I++ K+R GQE+ L KG+G DHAK+SP AT ++
Sbjct: 193 V-PKGRQAKYFSGENAIRPTNPDILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASY 251
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY---------- 231
P I I +E + + + + + P V ++ T G Y
Sbjct: 252 RLMPTITI----LEPILGRDAEKFQKCFPEGVIGLEKVTKEEAKKKGSGYEGHEGELKAV 307
Query: 232 VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
V+DA T E ++ E K V++ + D FI+ VESTG ++ + L +I LK+
Sbjct: 308 VLDAMRDTVSRECLRHDEFKDK---VKLGRRRDHFIYLVESTGQWESDAIFLESIAHLKE 364
Query: 292 K 292
K
Sbjct: 365 K 365
>gi|405121028|gb|AFR95798.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var. grubii
H99]
Length = 377
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 144/317 (45%), Gaps = 60/317 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P++ +R L + A F L + + AN+LRRVM+A+VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNESDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 70 RLGLIPLTSER-AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD---QTLDVTS--- 122
RLGLIPL S + +R++RDCD +G C +C V L+ + Q + VTS
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKVAFSGNDGEQFMRVTSDML 141
Query: 123 ------------------KDLYSSDHSVVP---VDFVDPAGYDSTDQQRGIIIVKLRRGQ 161
+L D ++ + P G I+I K+ +GQ
Sbjct: 142 EVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIG-KGNPTVPPILIAKMGKGQ 200
Query: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF 221
E+ + A KGI K HAKWSP +TV F Y+P + +E+ W SS F
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHT-THWFETDERAEWPLSS-NAAF 258
Query: 222 DIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
+ PN AE + Y+ A +F F+ ES G+I +
Sbjct: 259 ETPPNP-------AEPFDYN-------------------AVPSTFYFSAESVGSIPVRSV 292
Query: 282 VLNAIEVLKQKLDAVRL 298
V +++L + L V L
Sbjct: 293 VEQGLDLLIEGLANVVL 309
>gi|134112527|ref|XP_775239.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257891|gb|EAL20592.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 377
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 144/318 (45%), Gaps = 60/318 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P++ +R L + A F L + + AN+LRRVM+A+VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 70 RLGLIPLTSER-AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD---QTLDVTS--- 122
RLGLIPL S + +R++RDCD +G C +C V L+ + Q + VTS
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKVTFSGNDGEQFMRVTSDML 141
Query: 123 ------------------KDLYSSDHSVVP---VDFVDPAGYDSTDQQRGIIIVKLRRGQ 161
+L D ++ + P G I+I K+ +GQ
Sbjct: 142 EVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIG-KGNPTVPPILIAKMGKGQ 200
Query: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF 221
E+ + A KGI K HAKWSP +TV F Y+P + +E+ W SS F
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHT-THWFETDERAEWPLSS-NAAF 258
Query: 222 DIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
+ PN AE + Y+ A +F F+ ES G+I +
Sbjct: 259 ETPPNP-------AEPFDYN-------------------AVPSTFYFSAESVGSIPVRSV 292
Query: 282 VLNAIEVLKQKLDAVRLS 299
V +++L + L V L
Sbjct: 293 VEQGLDLLIEGLANVVLG 310
>gi|387593833|gb|EIJ88857.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
gi|387595137|gb|EIJ92763.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 254
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 136/288 (47%), Gaps = 43/288 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++I E+ ++ KF L MANALRRV++ E+PT+AID+V+ + N +V+ +E R
Sbjct: 3 KIEIEEVTEESIKFTLEGCTLGMANALRRVIMTEIPTLAIDIVQFDKNYTVIPEEMTTDR 62
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ S + +DC C+ CS+ L K + VTSK L+
Sbjct: 63 LGLIPIESSLVEKYLYPKDCSC---KSFCKNCSISIVLDVKNDGQTPMTVTSKSLFVEGG 119
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
P++ DP Y S II +L Q ++ + IA KGIGK H+KWSP +TV F Y
Sbjct: 120 D--PINIGDPR-YPS-------IITRLGHKQSIKCKCIAVKGIGKKHSKWSPVSTVAFGY 169
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
+ E SL + W E S K + + + +E Y +
Sbjct: 170 D----------EDNSLRHTKFWHEKSINKEWPAPWFSDKSTPAQSEEYVHS--------- 210
Query: 251 MGKPGLVEIYAKEDSFIFTVEST-GAIKASQLVLNAIEVLKQKLDAVR 297
A F F VE G++K +++ A++VLK KL VR
Sbjct: 211 ----------ADPSKFYFNVEVVKGSLKPMEVLSRAVQVLKDKLKHVR 248
>gi|167535426|ref|XP_001749387.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772253|gb|EDQ85908.1| predicted protein [Monosiga brevicollis MX1]
Length = 363
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 159/291 (54%), Gaps = 32/291 (10%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RA 81
+F++ DA++ N +RR++IA+ PT+AI+ V I N+S+L DE AHRLGLIP+ ++ R
Sbjct: 62 EFDIIGLDAAIVNTIRRILIADTPTMAIESVYIFNNTSMLPDELFAHRLGLIPIKADPRH 121
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTS-KDLYSSDHSVVPVDFV 138
+ R A DG + ++ F+L+ C + D T+ +DLY +++V+ +
Sbjct: 122 FTYR------ADDGGQPTDANTIVFNLKRVCTKKPNAPADATNPEDLY--ENAVIYSRDL 173
Query: 139 DPAGYDSTDQQRG----------IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+ A +Q G I+I+K+R GQE+ ++ KG+GK HAKWSP AT ++
Sbjct: 174 EWAPQGQQEQVFGKNGFSVVYDDIVIMKMRPGQEVNMQLFCEKGVGKTHAKWSPVATASY 233
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG---QVYVVDAEAYTYDDEVI 245
PEI + E ++ L+ + ++ + SP V DI N+ + +V+ A T EV
Sbjct: 234 RLMPEIILKEPIVGPLAHKLQKCF---SPG-VCDIVKNSKGEDEAKIVNPRADTVSREVF 289
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ + K VE+ D FIF+VES GA+ LVL A++ LK K V
Sbjct: 290 RHDDLRDK---VELNRVRDHFIFSVESVGALAPDVLVLMALQELKSKCQRV 337
>gi|295663793|ref|XP_002792449.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279119|gb|EEH34685.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 380
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 151/309 (48%), Gaps = 48/309 (15%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 79
A F L DAS+ANA RR++IAE+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 64 ASFSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 123
Query: 80 RAMSMRFSR---DCDACDGDGQCEFCSVEFHLRAKCH-----SDQTLD----VTSKDLYS 127
+R+ R + D G ++ ++ HL +C S LD + +Y+
Sbjct: 124 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPNELDPLKLYSHAHVYA 183
Query: 128 SDHSVVPVD-----FVDP-AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
D + PV F +P G T+ I++ KLR GQ++ + KGIG DHAK+S
Sbjct: 184 KDITFQPVGRQEAYFPEPDGGIRPTNPD--ILLAKLRPGQKIDIEMHCVKGIGADHAKFS 241
Query: 182 PAATVTFMYEPEIHINEDLM------------------ESLSLEEKQSWVESSPTKVFDI 223
P AT ++ P+I I ++ E+++ EE S ++
Sbjct: 242 PVATASYRLLPDIRILRPILGMDAVKFAGCFPEGVIGIETVTAEEA-----SQRGSGYEG 296
Query: 224 DPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
+ V+D T E ++ E GK L I D FIF VESTG ++ L L
Sbjct: 297 HEGAKKAVVLDPFKDTVSRECLRHEEFQGKVKLGRI---RDHFIFNVESTGQFRSDVLFL 353
Query: 284 NAIEVLKQK 292
+++VLK K
Sbjct: 354 ESVKVLKLK 362
>gi|58267768|ref|XP_571040.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227274|gb|AAW43733.1| RNA polymerase II subunit 3, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 377
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 144/318 (45%), Gaps = 60/318 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P++ +R L + A F L + + AN+LRRVM+A+VPTIAID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 70 RLGLIPLTSER-AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD---QTLDVTS--- 122
RLGLIPL S + +R++RDCD +G C +C V L+ + Q + VTS
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKVTFSGNDGEQFMRVTSDML 141
Query: 123 ------------------KDLYSSDHSVVP---VDFVDPAGYDSTDQQRGIIIVKLRRGQ 161
+L D ++ + P G I+I K+ +GQ
Sbjct: 142 EVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIG-KGNPTVPPILIAKMGKGQ 200
Query: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF 221
E+ + A KGI K HAKWSP +TV F Y+P + +E+ W SS F
Sbjct: 201 EIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHT-THWFETDERAEWPLSS-NAAF 258
Query: 222 DIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
+ PN AE + Y+ A +F F+ ES G+I +
Sbjct: 259 EPPPNP-------AEPFDYN-------------------AVPSTFYFSAESVGSIPVRSV 292
Query: 282 VLNAIEVLKQKLDAVRLS 299
V +++L + L V L
Sbjct: 293 VEQGLDLLIEGLANVVLG 310
>gi|288931228|ref|YP_003435288.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
gi|288893476|gb|ADC65013.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
Length = 262
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 147/282 (52%), Gaps = 33/282 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+I ++ KF L+D+D ANA RR M + VPT+A+D V+ +N+S+L DE IAHR
Sbjct: 2 KVEILSEEELKIKFILKDSDYVFANAWRRAMKSLVPTLAVDYVDFYLNTSLLYDEIIAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
+GLIPL ++ F C C+G+G C C V LR +T V S DL D
Sbjct: 62 IGLIPLKTDLE-RYNFQDKC-VCEGEG-CPNCQV--SLRLNVEGPKT--VYSGDLIPDDP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV YD+ I IV+L GQ+L L A+AR G GK+HAK+ P + +
Sbjct: 115 EVKPV-------YDN------IPIVELYEGQQLMLEAVARLGTGKEHAKFQPVSICYYKI 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P I I ED +L ++ V++ P V D G+V V + + + ++ EA
Sbjct: 162 IPRIEITEDC--NLCMK----CVDACPRNVLKND--NGKVVVENVLECSMCRDCVRVCEA 213
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
L+E + F+FTVE G + ++ A+E+LK+K
Sbjct: 214 NAI--LIE---ETGDFLFTVEGVGQLPVRTVMRKALEILKEK 250
>gi|443702676|gb|ELU00597.1| hypothetical protein CAPTEDRAFT_171865 [Capitella teleta]
Length = 349
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 152/306 (49%), Gaps = 27/306 (8%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D Q+F K + + L D +F++ D S+ANA RR++++EVPT+AID V+I N
Sbjct: 34 DAWDMQKFIKKFFINVVSLTDTDIEFDMVGLDCSLANAFRRILLSEVPTMAIDKVKIYNN 93
Query: 59 SSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQ 116
+S++ DE AHRLGLIP+ ++ M S D + +G E V F L+ KC + +
Sbjct: 94 TSIIQDEVFAHRLGLIPIKADPRMFEYRSED----NEEGTPEDTLV-FELKVKCTMNKNA 148
Query: 117 TLDVTSKDLYSSDHSVVPVDF-VDPAGYDS-------TDQQRGIIIVKLRRGQELRLRAI 168
T T D +H V D P G Q I+I KLR GQE+ +
Sbjct: 149 TEHATDPDELFINHKVTTRDMKWIPKGNQQELFKDSICPVQDDILIAKLRPGQEIDIEMH 208
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KG+G+DHAK+SP AT ++ P I + + EE + V ++ G
Sbjct: 209 CVKGLGQDHAKFSPVATASYRLMPVIELTRPYLG----EEAEQLAACFAPGVILVEEIKG 264
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
Q VV+ A T EV++ A K G V++ + FIF+VESTGA+ LV AI
Sbjct: 265 QKTALVVNPRADTCSREVMRHAHL--KDG-VKLSQERYHFIFSVESTGALPPEALVCEAI 321
Query: 287 EVLKQK 292
VL K
Sbjct: 322 NVLMSK 327
>gi|73667627|ref|YP_303642.1| DNA-directed RNA polymerase subunit D [Methanosarcina barkeri str.
Fusaro]
gi|72394789|gb|AAZ69062.1| DNA-directed RNA polymerase, subunit D [Methanosarcina barkeri str.
Fusaro]
Length = 266
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 142/300 (47%), Gaps = 38/300 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I EL D AKF L S AN +RR MIA+VPT+AI+ V + N+SVL DE +A R
Sbjct: 4 EVDILELSDRSAKFVLSKVSTSFANGIRRAMIADVPTLAIEYVNLYENTSVLYDEQLALR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPL ++ + +CD C G+G C C V L A + V S+DL SSD
Sbjct: 64 LSLIPLVTDVETYVP-QAECDVCGGEG-CPACEVSLTLSA----EGPCTVYSRDLISSDP 117
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
+ P D I IV+L++GQ+L L A+A G G+D KW +
Sbjct: 118 KIQPAD-------------PNIPIVELKKGQKLVLEALAHMGYGRDSVKWQAGVACGYKN 164
Query: 191 EPEIHI-NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
P I I N D + E P + + + +V D + K E
Sbjct: 165 VPVITIENCDACGHCAAE--------CPKGIIRFEESGAKVSSED----VLKCSLCKLCE 212
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADDQF 309
+ ++I E++F+FT+ES G+ A L LNA V+K K +E+ + DQF
Sbjct: 213 QVCDIHAIKIGFDENAFVFTMESDGSYTAKDLALNASNVIKGK------AEELLSILDQF 266
>gi|225461965|ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Vitis vinifera]
gi|296089944|emb|CBI39763.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 158/315 (50%), Gaps = 42/315 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V++ L +D +F++ D S+ANA RR++IAE+PT+AI+ V I N+S++ DE +AHR
Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDLYSSD 129
LGLIP+ ++ + F D + D E ++ F+L +C L V S +L
Sbjct: 126 LGLIPINADPRL---FD---DLSENDTPNEKNTIVFNLHVRCERGGPRLTVKSNELKWLP 179
Query: 130 H-SVVPV--------DFVDPAGYDS-----------TDQQRG-----IIIVKLRRGQELR 164
H S P+ P Y S +D+ G III KL GQE+
Sbjct: 180 HGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIE 239
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L A A KG+GK HAKWSP AT + PE+ L++ + E+ + V+ P VFDI+
Sbjct: 240 LEAHAVKGMGKTHAKWSPVATAWYRMLPEV----VLLQEIEDEKAEELVKKCPVNVFDIE 295
Query: 225 ---PNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
+ V A T E I+ + V I ++ FIFT+ESTGA+ L
Sbjct: 296 DIAKGKKKATVARPRACTLCRECIRGDDWDKH---VAIRRVKNHFIFTIESTGALPPEVL 352
Query: 282 VLNAIEVLKQKLDAV 296
A++VL+ K + V
Sbjct: 353 FNEAVKVLEDKCERV 367
>gi|365762578|gb|EHN04112.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 323
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 20/292 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I L A F+L + D S+ANA RR+MI+EVP++A + V N+SV+ DE +AHR
Sbjct: 41 EVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYS 127
+GL+PL + M D + D + + ++ L KC + S K+LY+
Sbjct: 101 IGLVPLKVDPDMLTWV--DSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 128 SDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ H +P G ST I++ KLR GQE+ L+A GIG DHAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP +T ++ P+I+I ++ + E + + + P V ID + + YV DA T
Sbjct: 219 FSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDT 274
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
EV++ E K V++ + FIF VES GA+ ++ + K+
Sbjct: 275 VSREVLRYEEFADK---VKLGRVRNHFIFNVESAGAMTPEEIFFQIRQNFKE 323
>gi|392574290|gb|EIW67427.1| hypothetical protein TREMEDRAFT_45370 [Tremella mesenterica DSM
1558]
Length = 361
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 61/329 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+V +R L D F L + ++AN++RRVM+A+VPT+ ID V N+S + DE +AH
Sbjct: 25 PRVLVRSLTKDEVNFNLSGMELALANSIRRVMMADVPTVCIDQVLFAQNTSPIPDEMLAH 84
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAK-CHSDQT--LDVTSKDLY 126
RLG++PL S R +S R D CD D C +C+V L+ H ++ + +TS L
Sbjct: 85 RLGMVPLIS-RNVSKGLRRTSD-CDCDEGCYYCTVTLRLKVSYTHGERGKFMPITSNML- 141
Query: 127 SSDHSVVPVDFVDPAGYDSTDQQ--------------------RGIIIVKLRRGQELRLR 166
VVP + P DQQ I++ KL RGQE+ L
Sbjct: 142 ----EVVPNPYGPPPDLSPDDQQVINNRDPELGQPVGKNDPATPPILLAKLSRGQEIDLT 197
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
A GI K HAKWSP + V F Y+P + +EK W S+ F+ P
Sbjct: 198 CKAYSGIAKFHAKWSPLSAVAFEYDPHNKLRHTTY-WYETDEKAEWPLSA-NAAFEAPPQ 255
Query: 227 TGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ + + A +F E GA+ ++V I
Sbjct: 256 PDEPF--------------------------DFNAVPSTFYLNAEGVGAVPVREVVEQGI 289
Query: 287 EVLKQKLDAVRLS---EDTVEADDQFGEL 312
++L + L V L+ E V+ D++ G L
Sbjct: 290 DILVENLANVILAVQRETGVDEDEEGGGL 318
>gi|168042851|ref|XP_001773900.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674744|gb|EDQ61248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 360
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 161/304 (52%), Gaps = 36/304 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+I + ++ +F++ DA++ANA RR++IAEVPT+AI+ V I N+SV+ DE +AHR
Sbjct: 62 RVEIISMNEEDIEFDIVGIDAAIANAFRRILIAEVPTMAIEKVYIANNTSVIQDEVLAHR 121
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLD--VTSKDL- 125
LGL+P+ ++ + S + +A + + ++ F + C ++ L+ VTS +
Sbjct: 122 LGLLPIKADPRLFDYKSEEENANEKN------TIVFKIDVVCTRKGERVLNSSVTSDQMK 175
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQR--------------GIIIVKLRRGQELRLRAIARK 171
+ + S +P + + + Q+ II+ KLR GQ + L A K
Sbjct: 176 WLPEGSEMPFNTMTKFTSFGSSQKNLPGLPAEGISCQYPDIIVAKLRPGQAIELEGHAIK 235
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV- 230
G G HAKWSP AT + PE+++ ED+ L+ E V+ PT VFDI+ + G V
Sbjct: 236 GSGNIHAKWSPVATARYRMLPEVNLMEDIQGKLAEE----LVQKCPTGVFDIE-DVGTVK 290
Query: 231 --YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
V T E ++ + + V++ +D FIFT+ESTGA++ L AI++
Sbjct: 291 KAIVARPRNCTLCRECVRGTDWDKR---VQLTRVKDHFIFTIESTGALRPEVLFTEAIKI 347
Query: 289 LKQK 292
L +K
Sbjct: 348 LNEK 351
>gi|11499863|ref|NP_071107.1| DNA-directed RNA polymerase subunit D [Archaeoglobus fulgidus DSM
4304]
gi|3122769|sp|O28002.1|RPOD_ARCFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|2648239|gb|AAB88973.1| DNA-directed RNA polymerase, subunit D (rpoD) [Archaeoglobus
fulgidus DSM 4304]
Length = 264
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 150/287 (52%), Gaps = 41/287 (14%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P+++I E KD KF L++ ++AN+ RR M AEVP +A+D V+I +NSS DE IAH
Sbjct: 3 PEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAH 62
Query: 70 RLGLIPLTSERAMSMRFSRDCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RL ++P+ + RF+ + +C G+G C C + F L + K +YS
Sbjct: 63 RLAMLPI---KTYLDRFNMQSECSCGGEG-CPNCQISFRLNVE---------GPKVVYSG 109
Query: 129 DHSVVPVDFV--DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
DF+ DP + D I +++L GQ+L L A+AR G G++HAK+ P +
Sbjct: 110 -------DFISDDPDVVFAIDN---IPVLELFEGQQLMLEAVARLGTGREHAKFQPVSVC 159
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
+ PEI +NE+ +E+ P VF+ D + +V V + A + E ++
Sbjct: 160 VYKIIPEIVVNENCNGC------GDCIEACPRNVFEKDGD--KVRVKNVMACSMCGECVE 211
Query: 247 KAEAMGKPGLVEIYAKE-DSFIFTVESTGAIKASQLVLNAIEVLKQK 292
E + I E ++F+FTVE TGA+ +++ A+E+L+ K
Sbjct: 212 VCE------MNAISVNETNNFLFTVEGTGALPVREVMKKALEILRSK 252
>gi|392560708|gb|EIW53890.1| insert subdomain of RNA polymerase alpha subunit [Trametes
versicolor FP-101664 SS1]
Length = 366
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 145/285 (50%), Gaps = 16/285 (5%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V ++ L +F+L DAS+ANA RR+MIAEVPTIAI+ V + N+SV++DE +A RL
Sbjct: 57 VSVKRLSQRSIEFDLVGVDASIANAFRRIMIAEVPTIAIEDVFVWNNTSVIHDEILAQRL 116
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GLIPL + A+ FS GD + ++ F L +C + ++ + S D
Sbjct: 117 GLIPLNVDPAL---FS---PRLPGDIPYDRNTLVFQLDIECSRGAKGAIINEYVTSGDLK 170
Query: 132 VVPVDFVDPAGYD--STDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
VP + D T + I+I KLR GQ + + A KG+GK+HAKWSP AT T+
Sbjct: 171 WVPQGEQESVFGDLVPTATNKDIVIAKLRPGQVINVELHAIKGVGKEHAKWSPVATATYR 230
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY--TYDDEVIKK 247
P + +N + + Q + V + P+ G+V + D T EV++
Sbjct: 231 LHPLVLLNPS--KPIPPHLAQKFASCFSPGVVKVSPD-GEVSIDDRHLRKETMSREVLRH 287
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
E G VE+ D FI++VES G L +I++++ K
Sbjct: 288 KEFEGS---VELKRVRDWFIYSVESEGPYAPEVLFPESIKIMRGK 329
>gi|149571084|ref|XP_001507416.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ornithorhynchus anatinus]
Length = 346
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 164/322 (50%), Gaps = 33/322 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D + +++ +V + ++++D +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQSRFEQGFRVDVVQMEEDSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+T++ R R D + + D +++F L+ KC
Sbjct: 101 MQDEVLAHRLGLIPITADPRLFEYRNQGDEEGTEID------TLQFQLKVKCTWNPSAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLR 166
SD + +Y+ + VP+ F + A D I+I +LR GQEL L
Sbjct: 155 DSSDPNQLYLNHKVYTKHMTWVPLGNQADLFPEGAIRPVHDD---ILITQLRPGQELDLL 211
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
KG+GKDHAK+SP TV++ P+I L++ + E + + V I
Sbjct: 212 MHYVKGVGKDHAKFSPVDTVSYRLLPDI----TLLQPVEGEMAEKLKDCFSPGVIQIQEI 267
Query: 227 TGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
G+ V + T+ EV + E LV + D +IF+VESTG + LV
Sbjct: 268 KGKKVAVVANPRLETFSREVFRHDEL---KKLVRLARVRDHYIFSVESTGVLPPDVLVSE 324
Query: 285 AIEVLKQKLDAVRLSEDTVEAD 306
AI++L K DT++ D
Sbjct: 325 AIKILMGKCRRFLDELDTIQMD 346
>gi|340501661|gb|EGR28416.1| polymerase i polypeptide 30kda, putative [Ichthyophthirius
multifiliis]
Length = 330
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 145/277 (52%), Gaps = 39/277 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++I K + +F+L+ DA +ANALRR+MIAEVPT+AI V I N+S++ DE +AHR
Sbjct: 35 KIEILNSKPEQIEFQLQGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHR 94
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS-KDLYSSD 129
LGL+P+ ++ + D + + + S++F ++ KC QT + S KDL + D
Sbjct: 95 LGLLPIQADPRLFEEKEDDAEYNENN------SIKFSIKVKCQKKQTYNNHSQKDLENLD 148
Query: 130 HSVVPVDFVDPA-------GYDSTDQQR-------------GIIIVKLRRGQELRLRAIA 169
P +++ A ++ Q+ II+ KLR QE+ I
Sbjct: 149 ----PEKYLENAIVYSGQFKWEPIGNQKERFKENIIKIVHDNIIVAKLRENQEIIAEVIC 204
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
+KG+GK+HAKWSP T + P I I +E + ++ Q E P KV+D+ N Q
Sbjct: 205 QKGMGKNHAKWSPVCTAYYRLMPSIKI----LEPIQGKKAQQLKEKCPAKVYDVINN--Q 258
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSF 266
VV+ T E I++ E + + +++ ++D+F
Sbjct: 259 AKVVNEIECTMCRECIREDEELNQK--LQLGKEQDNF 293
>gi|226287322|gb|EEH42835.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb18]
Length = 380
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 150/309 (48%), Gaps = 48/309 (15%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 79
A F L DAS+ANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 64 ASFSLIGVDASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPE 123
Query: 80 RAMSMRFSR---DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYS 127
+R+ R + D G ++ ++ HL +C + +D +Y+
Sbjct: 124 GINWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYA 183
Query: 128 SDHSVVPVD-----FVDP-AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
D + PV F +P G T+ I++ KLR GQ++ + KGIG DHAK+S
Sbjct: 184 KDITFQPVGRQEAYFPEPDGGIRPTNPD--ILLAKLRPGQKIDIEMHCVKGIGADHAKFS 241
Query: 182 PAATVTFMYEPEIHINEDLM------------------ESLSLEEKQSWVESSPTKVFDI 223
P AT ++ P+I I ++ E+++ EE S ++
Sbjct: 242 PVATASYRLLPDIRILRPILGMDAVKFAGCFPEGVIGIETVTAEEA-----SQRGSGYEG 296
Query: 224 DPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
+ V+D T E ++ E GK L I D FIF VESTG ++ L L
Sbjct: 297 HEGAKKAVVLDPFKDTVSRECLRHEEFRGKVKLGRI---RDHFIFNVESTGQFRSDVLFL 353
Query: 284 NAIEVLKQK 292
+++VLK K
Sbjct: 354 ESVKVLKLK 362
>gi|432098388|gb|ELK28188.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 303
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 139/297 (46%), Gaps = 82/297 (27%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
+ G+ P V+I EL D+ KF + +TD ++AN+LRRV I E
Sbjct: 66 VSGSLLSNQPTVRITELTDENVKFIVENTDLAVANSLRRVFIGE---------------- 109
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+++SRDC + C CSVEF L +C+ DQT +
Sbjct: 110 -----------------------LQYSRDCTC---EELCPECSVEFTLDVRCNEDQTRHI 143
Query: 121 TSKDLYSSDHSVVPVDF----VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
TS+DL S+ V+PV DP Y D I+IVKLR+GQELRLRA A KG GK+
Sbjct: 144 TSRDLISNSPRVIPVTSRNRDNDPNDYVDQDD---ILIVKLRKGQELRLRAYAEKGFGKE 200
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAKW+P A V F Y+P N L ++ + + W +S +++ + D
Sbjct: 201 HAKWNPTAGVAFEYDP----NNALRHTV-YPKPEEWPKSEYSELDE-----------DES 244
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
YD + +++ F + VES G+++ +VL+A+ +K+KL
Sbjct: 245 LVPYD-----------------LNGEQERFYYNVESCGSLRPETIVLSALSGVKKKL 284
>gi|323302589|gb|EGA56396.1| Rpc40p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 145/292 (49%), Gaps = 20/292 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I L F+L + D S+ANA RR+MI+EVP++A + V N+SV+ DE +AHR
Sbjct: 41 EVNISSLDARETNFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYS 127
+GL+PL + M D + D + + ++ L KC + S K+LY+
Sbjct: 101 IGLVPLKVDPDMLTWV--DSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYN 158
Query: 128 SDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ H +P G ST I++ KLR GQE+ L+A GIG DHAK
Sbjct: 159 NAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAK 218
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP +T ++ P+I+I ++ + E + + + P V ID + + YV DA T
Sbjct: 219 FSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDT 274
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
EV++ E K V++ + FIF VES GA+ ++ + K+
Sbjct: 275 VSREVLRYEEFADK---VKLGRVRNHFIFNVESXGAMTPEEIFFQIXQNFKE 323
>gi|224060523|ref|XP_002300229.1| predicted protein [Populus trichocarpa]
gi|222847487|gb|EEE85034.1| predicted protein [Populus trichocarpa]
Length = 87
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 75/86 (87%)
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
V V+D EAYT DD+VIKKAEA GKPG+++I AKED+F+F V STGAIKASQLVL+AIE+L
Sbjct: 1 VVVLDPEAYTNDDKVIKKAEAKGKPGIIDIRAKEDNFVFIVGSTGAIKASQLVLDAIEIL 60
Query: 290 KQKLDAVRLSEDTVEADDQFGELGAH 315
KQKLDAVRLS+D VEADDQF EL A
Sbjct: 61 KQKLDAVRLSDDIVEADDQFDELSAR 86
>gi|164658784|ref|XP_001730517.1| hypothetical protein MGL_2313 [Malassezia globosa CBS 7966]
gi|159104413|gb|EDP43303.1| hypothetical protein MGL_2313 [Malassezia globosa CBS 7966]
Length = 270
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 129/257 (50%), Gaps = 48/257 (18%)
Query: 52 LVEIEVNSSVLNDEFIAHRLGLIPLTS-ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRA 110
+VEI +N++VL DEF+AHRLG+IPL S + A + R+C DG C+ CSVE L A
Sbjct: 1 MVEITINTTVLPDEFLAHRLGMIPLLSMDTAKVLIDQRECSCEDG---CDRCSVELSLDA 57
Query: 111 KCHSDQ-TLDVTSKDL---------YSSDHSVVPV-----DFVDPAGYDSTDQQRGIIIV 155
C SD+ + VTSKDL YS + PV DF P G D + G++IV
Sbjct: 58 LCTSDRGAMLVTSKDLIRSNTIANMYSDESVFGPVAPRHPDFGKPVGQDDPNAN-GVVIV 116
Query: 156 KLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVES 215
+LR+GQ ++ R IARKG K+HAKWSP + V F Y+P + + + K+ W ES
Sbjct: 117 QLRKGQHIKARCIARKGFAKEHAKWSPVSAVGFEYDPHNTLRHTTL-WYEFDAKKEWPES 175
Query: 216 SPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGA 275
+ +E A+ P L + F F VES G+
Sbjct: 176 KNAR----------------------EEEPPAEGALFDPNL-----QASRFYFDVESVGS 208
Query: 276 IKASQLVLNAIEVLKQK 292
+ +++V A+ +L+ K
Sbjct: 209 LHPAEIVDTALSLLEYK 225
>gi|302845439|ref|XP_002954258.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
gi|300260463|gb|EFJ44682.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
Length = 354
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 156/303 (51%), Gaps = 24/303 (7%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D A +++ K+ I +L + +F++ D ++ANALRR++IAEVPT+AI+ V + N+S+
Sbjct: 56 DLAQFKKDFKIIINKLDKEVLEFDMIGVDPAIANALRRILIAEVPTMAIEHVFMINNTSI 115
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
+ DE +AHRLG++PL ++ + F + E ++ F L C + +
Sbjct: 116 IQDEVLAHRLGMVPLLADPQL---FEAKVAE---EAPSEKNTLVFKLDVTCKRGENRMFS 169
Query: 122 SKDLYSSDHSVVPVD------------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
+ + S +P + F DPA I++ KLR GQ ++L A A
Sbjct: 170 GQLEWLPGGSELPEETTCRFAAGQAHLFADPATPKPRAVHDDILLAKLRPGQTIQLEAHA 229
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KG GK+HAKWSP AT + +P +H+ +D+ ++ + Q + + P +F D
Sbjct: 230 TKGRGKEHAKWSPVATAWYRLQPVVHVIQDV--AVDSDVGQELMSACPG-LFVADEGGRV 286
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
+ DA + ++++ V K+D FIFT+ES+GA+ +L+ A+E+L
Sbjct: 287 LRANDARGHEMLRRLLEQERF---SSCVSYRKKKDHFIFTIESSGAVPPLELLGQALELL 343
Query: 290 KQK 292
+K
Sbjct: 344 GEK 346
>gi|403361811|gb|EJY80614.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Oxytricha
trifallax]
Length = 405
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 161/324 (49%), Gaps = 46/324 (14%)
Query: 1 MDGASYQRF---PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEV 57
+D S + F ++I +L D+ F+L + +ANALRR++IAE+PT+AI+ V +
Sbjct: 69 LDKVSLKDFIENSNIEILKLDDEEIIFDLIGVEPPLANALRRILIAEIPTMAIEKVNMWQ 128
Query: 58 NSSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFC---SVEFHLRAKCH 113
N+S++ DE +AHR+GLIP+ ++ R + G+ Q + S+ F L +C
Sbjct: 129 NTSIIPDENLAHRMGLIPIKADPRQFEFHEKSTLENDQGEQQDTYTEDDSLRFKLHVRCT 188
Query: 114 S---------DQTLD----VTSKDLYSSDHSVVP---------VDFVDPAGYDSTDQQRG 151
+ T+D + ++ S +P VD + P D
Sbjct: 189 KKDPRAPVIINNTVDEEKLYNNANVLSGQLKWIPVGNQAQKFGVDGIKPLFDD------- 241
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I+I KLR GQE+ + I KGIGK HAKWSP +T + P+I I +D+M ++E K
Sbjct: 242 ILIAKLRPGQEIEMELICEKGIGKTHAKWSPVSTAFYRLVPDIKITQDIMNEEAVELKN- 300
Query: 212 WVESSPTKVFDIDP--NTGQVYVV-DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIF 268
PT V+DI+ G+ +V D T E I+ + + L +I +D F F
Sbjct: 301 ---LCPTGVYDIEDLGKKGKRAIVGDVRKCTTCRECIRPEKFRERIDLGKI---KDRFEF 354
Query: 269 TVESTGAIKASQLVLNAIEVLKQK 292
VES G + LV+ A++ LK+K
Sbjct: 355 HVESVGILPPEVLVIEALKKLKEK 378
>gi|156839627|ref|XP_001643502.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114116|gb|EDO15644.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 320
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 21/309 (6%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D ++ ++ I ++ + +L + D S+ANALRR+MI+EVP++A + + I N+SV
Sbjct: 18 DANKFRENLEINISKVGERETNLDLINVDTSIANALRRIMISEVPSVAAEYIYILNNTSV 77
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH-------- 113
+ DE IA R+GLIPL + + D + + + ++ L KC
Sbjct: 78 IQDEVIAQRIGLIPLKVDPDRLTWLNNDLP--EDEKFTDENTIVLSLNVKCTRNLDAPKD 135
Query: 114 -SDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDS--TDQQRGIIIVKLRRGQELRLRAIAR 170
+D ++ + +Y+ D P + DS I+I KLR GQE+ LRA
Sbjct: 136 CTDPSILYHNAHIYARDLKFEPQGKQEETFADSPVVSADPDILIAKLRPGQEISLRAHCI 195
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
GIG DHAK+SP T ++ P+I I E + E + + + P V DI+ N +
Sbjct: 196 LGIGADHAKFSPVCTASYRLMPKIII----TEKIKGESAKRFQKCFPPGVIDINEN-DEA 250
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
YV DA T EV++ E K V++ + FIF +E+ GA+ A ++ L ++++LK
Sbjct: 251 YVKDARKDTMTREVLRHEEFQDK---VKLDRVRNHFIFNIETVGAMSAEEIFLKSVKILK 307
Query: 291 QKLDAVRLS 299
K + ++ S
Sbjct: 308 NKAEYLKNS 316
>gi|348538459|ref|XP_003456708.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Oreochromis niloticus]
Length = 351
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 157/303 (51%), Gaps = 27/303 (8%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+Q+ ++ + L ++ +F++ DA++ANA RR+++AEVPT+A++ V I N+S++ DE
Sbjct: 46 FQKNFRIDVVHLDENSMEFDMVGIDAAIANAFRRILLAEVPTMAMEKVFIYSNTSIVQDE 105
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD- 124
+AHRLGLIP+ ++ + + + + E +++ L+ KC + S D
Sbjct: 106 VLAHRLGLIPIKADPRL-FEYRNTGEESAEEEGSEIDTIQLQLKIKCSRNPRASKDSSDP 164
Query: 125 --------LYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
+YS D VP+ F D D I+I +LR GQEL + K
Sbjct: 165 RELYLNHMVYSKDIKWVPIGNQADVFADCCIGPVHDD---ILIAQLRPGQELDIVMHCVK 221
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ-- 229
GIGKDHAK+SP AT ++ PEI L+E + E+ + + V D++ G
Sbjct: 222 GIGKDHAKFSPVATASYRLLPEI----TLLEVVEGEKAERLKQCFSRGVIDLEDINGTKV 277
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
VV++ T EV++ ++ +V++ D FIFTVESTG + LV AI+VL
Sbjct: 278 AKVVNSRLDTCSREVLRHSDL---KNVVKLGRVRDHFIFTVESTGILPPDVLVTEAIKVL 334
Query: 290 KQK 292
K
Sbjct: 335 MAK 337
>gi|157116377|ref|XP_001658447.1| DNA-directed RNA polymerase [Aedes aegypti]
gi|108876498|gb|EAT40723.1| AAEL007568-PA [Aedes aegypti]
Length = 335
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 162/302 (53%), Gaps = 29/302 (9%)
Query: 6 YQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
++RF + + I +++ +F++ + ++ANA RR+M++EVP++AI+ V I N+S++
Sbjct: 37 FERFKQQLQIVIVRYEENELEFDMVGVNPAIANAFRRLMLSEVPSMAIEKVHIYNNTSII 96
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDV 120
DE +AHRLGLIPL RA F + D + ++EF L+ KC + + ++
Sbjct: 97 QDEVLAHRLGLIPL---RADPRLFEYKTNENDPPNALD--TLEFELKVKCTKKNKDSTEI 151
Query: 121 TSKDLYSSDHSVVP--VDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIAR 170
T+ D +HS+ + ++ P G ++ + I+I K+R G E ++ A
Sbjct: 152 TNNDSMYKNHSIYSGQIKWI-PVGNQASIYKEADVGPIDDDILISKMRPGHEFDIKLFAM 210
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
KGIGKDHAK+SP AT ++ PE+ + ++ +L ++ + SP V +ID + Q
Sbjct: 211 KGIGKDHAKFSPVATASYRLLPEVRLTRPVVGRDALLLQKCF---SPG-VIEIDKD-DQA 265
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
YV DA + V + + L + + FIF VES GA+K + + A +VLK
Sbjct: 266 YVKDARYDSCSRNVYRYPQIADAVTLSRV---RNHFIFNVESLGALKPDVIFVEAAKVLK 322
Query: 291 QK 292
+K
Sbjct: 323 KK 324
>gi|403419367|emb|CCM06067.1| predicted protein [Fibroporia radiculosa]
Length = 377
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 157/318 (49%), Gaps = 32/318 (10%)
Query: 4 ASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
A +++ KV ++ L +F+L DAS+ANA RR+MIAEVP++AI+ V + N+SV++
Sbjct: 54 AHFKQNLKVSVKRLSQRSVEFDLIGVDASIANAFRRIMIAEVPSLAIENVYVWNNTSVIH 113
Query: 64 DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD---- 119
DE +AHRLGL+PL + ++ + D + ++ F L C D++
Sbjct: 114 DEVLAHRLGLVPLNVDPSL-FDYREDV-------PTDRNTLVFRLNVACEVDKSASKEKG 165
Query: 120 VTSKDLY----SSDHSVVP-----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIAR 170
+ K L+ S D +P F AG + I++ KLR GQE+ + A
Sbjct: 166 ASRKFLHELVKSGDLEWIPQGEQAAVF---AGCTPAPTNKEIVLAKLRPGQEIEMELHAI 222
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
K +GK HAKWSP AT ++ P I +N L EK + S D D GQ+
Sbjct: 223 KNVGKVHAKWSPVATASYRLHPLIVLNPSKPVPPHLGEKFAACFSPGVVQIDRD---GQI 279
Query: 231 YV--VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
+ + + EV++ E G VE+ D FI+T+ES G L AI+V
Sbjct: 280 SIHEHNMRKESMSREVLRHKEFE---GCVELKRIRDWFIYTIESEGPYAPEDLFPEAIKV 336
Query: 289 LKQKLDAVRLSEDTVEAD 306
++ K+ +R + + + AD
Sbjct: 337 MRSKIANIRQAAEGLLAD 354
>gi|403213911|emb|CCK68413.1| hypothetical protein KNAG_0A07600 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 152/302 (50%), Gaps = 22/302 (7%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
+RF +KI + + A F+L D S+ANA RR+MI+EVP++A + V + N+SV+ DE
Sbjct: 38 ERF-DIKISSMSEREANFDLVHIDTSVANAFRRIMISEVPSVAAEYVYVMNNTSVIQDEV 96
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKD 124
+AHR+G+IPL + M D + + + +V L KC + + D T
Sbjct: 97 LAHRIGMIPLKVDPDMLTWI--DQSLSEEEKFTDENTVVLTLNVKCTRNLNAPKDCTDPK 154
Query: 125 LYSSDHSVVPVDF-VDPAGYD--------STDQQRGIIIVKLRRGQELRLRAIARKGIGK 175
+ + SV D +P G I++ KLR QE+ LR GIG
Sbjct: 155 ILYKNSSVYARDLRFEPQGKQLETFADCPVVPSDPDILLAKLRPNQEISLRVHCILGIGS 214
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA 235
DHAK+SP AT ++ P HIN ++E ++ E + + P V ID + G+ V +A
Sbjct: 215 DHAKFSPVATASYRLLP--HIN--ILEPITGESAKRFQACFPQGVIGID-SEGKAVVENA 269
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
T EV++ E K V++ D FIF VESTGA+ ++ ++ +LK K +
Sbjct: 270 RKDTVSREVLRYEEFKDK---VKLGRVRDHFIFNVESTGAMTPEEIFFKSVRILKNKAEY 326
Query: 296 VR 297
++
Sbjct: 327 LK 328
>gi|41056007|ref|NP_956860.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Danio rerio]
gi|34193909|gb|AAH56581.1| Polymerase (RNA) I polypeptide C [Danio rerio]
Length = 347
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 161/315 (51%), Gaps = 44/315 (13%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D +++F K ++I ++ +F++ DA++ANA RR+++AEVPT+AI+ V I N
Sbjct: 39 DTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNN 98
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
+S++ DE +AHRLGL+P+ ++ R R S D + + D +++ L+ KC +
Sbjct: 99 TSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPR 152
Query: 118 LDVTSKD---------LYSSDHSVVPVD-----FVD----PAGYDSTDQQRGIIIVKLRR 159
S D +YS D +P+ F D P D I++ ++R
Sbjct: 153 APKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKIGPVHGD-------ILLAQVRP 205
Query: 160 GQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTK 219
GQEL + KGIGKDHAK+SP AT ++ PEI L++++ E+ +
Sbjct: 206 GQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEI----TLLQTIEGEQAERLKRCFSPG 261
Query: 220 VFDIDPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 277
V +++ G+ VV++ T EV++ + LV++ D FIF+VESTG +
Sbjct: 262 VIELENVNGRKVAKVVNSRLDTCSREVLRHDDLK---SLVKLGRVRDHFIFSVESTGILP 318
Query: 278 ASQLVLNAIEVLKQK 292
LV AI VL K
Sbjct: 319 PDVLVTEAINVLMSK 333
>gi|409096145|ref|ZP_11216169.1| DNA-directed RNA polymerase subunit D [Thermococcus zilligii AN1]
Length = 260
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 142/288 (49%), Gaps = 44/288 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK +I E ++D KF LR D + ANALRR ++AEVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEILEKREDSLKFILRGVDVAFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RL +IPLT+ RFS D D +V L+A+ V S DL S D
Sbjct: 63 RLAMIPLTTPYT---RFSLDSLELDD------YTVTLSLQAEGPG----VVYSGDLKSDD 109
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ P + I IVKL GQ+L L A AR G GKDHAKW P V +
Sbjct: 110 PEIKPAN-------------PNIPIVKLAEGQKLALNAYARLGRGKDHAKWQP-GFVYYK 155
Query: 190 YEPEIHINEDLMESLSLEE---KQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
Y IH+++++ E L+E K+ K I+ T + + + + Y+ E I+
Sbjct: 156 YLTRIHVSKEVPEWKELKELAKKRGLPVEETEKELVIE--TTKSFYLPRKFEAYEGEKIR 213
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+ ++F+FTVES G + ++V A+++L +K D
Sbjct: 214 EE------------VVPNTFVFTVESNGELPVGEIVSTALKILMRKSD 249
>gi|189239160|ref|XP_971966.2| PREDICTED: similar to CG3756 CG3756-PA [Tribolium castaneum]
Length = 338
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 159/309 (51%), Gaps = 37/309 (11%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
+RF V +R +++ +F+L +AN RR+M+++VPT+AI+ V I N+S++ DE
Sbjct: 41 KRFRVVIVRS-EENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHILNNTSIIQDEV 99
Query: 67 IAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLD-VTS 122
+AHRLGLIPL ++ R M+ R +G Q ++EF L+ KC + D + D + +
Sbjct: 100 LAHRLGLIPLKADPRLFEMKTDRKSSTAEGTEQ---DTLEFALKIKCTNNKDSSKDSLRA 156
Query: 123 KDLYSSDH------SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
+D+Y +++ VP+ D I+I K+R G EL L+ +A K G+D
Sbjct: 157 EDMYKNNNVYSKHIKWVPIGKQKERFSDVGPIHPDILIAKMRPGHELDLKLLAVKSNGRD 216
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAK+SP AT + P+I L+ + E + + V I G+ Y V A
Sbjct: 217 HAKFSPVATAFYRLLPDI----KLLREVEGEAAERLQKCFSPGVISIRHEKGRKYAVVAN 272
Query: 237 A---------YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
A + Y+D +K A AM K +D FIFTVES GA+ + + A++
Sbjct: 273 ARYDTGSRNVFRYED--LKDAVAMTK--------IQDHFIFTVESVGALPPDVIFMEAVK 322
Query: 288 VLKQKLDAV 296
+LK K A+
Sbjct: 323 ILKDKCLAL 331
>gi|449461051|ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
gi|449522768|ref|XP_004168398.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
Length = 391
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 158/315 (50%), Gaps = 49/315 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+++ +LK+D +F++ D ++ANA RR++I+EVPT+AI+ V N+S++ DE +AHR
Sbjct: 88 KIEVIDLKEDDIEFDMIGIDPALANAFRRILISEVPTMAIEKVLFANNTSIVQDEVLAHR 147
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSKDL---- 125
LGL+P+ + + ++S D D E ++ F L A C + L VTSK L
Sbjct: 148 LGLVPIRVDPRL-FKYS------DKDAPNENNTIVFRLHACCERGKPRLTVTSKALTWLP 200
Query: 126 -----------------------YSSDHSVVPVDFV-DPAGYDSTDQQRGIIIVKLRRGQ 161
+S + + +F +P G +D II+ +L GQ
Sbjct: 201 NGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSD----IILARLGPGQ 256
Query: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF 221
E+ L A A KG+GK HAKWSP AT + PE+ LME + E + + P VF
Sbjct: 257 EIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVV----LMEEIEDELAEELEKKCPVNVF 312
Query: 222 DIDPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKAS 279
DI+ G+ V T E I + +A K V + +D FIF +ESTGA+
Sbjct: 313 DIEDIAGKKRATVARPRDCTLCRECI-RGDAWEK--RVALRRVKDHFIFKIESTGALPPE 369
Query: 280 QLVLNAIEVLKQKLD 294
L A+++L+ K +
Sbjct: 370 VLFTEAVKILEDKCE 384
>gi|288560165|ref|YP_003423651.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
gi|288542875|gb|ADC46759.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
Length = 282
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 41/298 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ +++ ++ F +RD + NA+RR+ + VP +AI+ V I N S + DE +AHR
Sbjct: 2 EIDVKKQDENSMVFIVRDAEVPFINAIRRIAMMRVPKLAIEDVFIVKNDSAMFDEVLAHR 61
Query: 71 LGLIPLTSE----RAMSMRFSRDCDACDGDGQ-------CEFCSVEFHLRAKCHSDQTLD 119
LGL PL S+ + MR DC+ D +G C CSV F L +
Sbjct: 62 LGLTPLVSDLESIEGLVMREDCDCNH-DENGNYVDKGEYCPRCSVSFSL----NETGPKV 116
Query: 120 VTSKDLYSS-DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
V S+DL S D + PV YD+ I ++KL+ Q++ L A+A+ GIGK+HA
Sbjct: 117 VYSRDLKSCGDSRIKPV-------YDT------IPLLKLKEDQDVELEAVAKLGIGKEHA 163
Query: 179 KWSPAATVTFMYEPEIHIN--EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
KW P + PEI N ED++ ++ ++ P V D + + G + V+D E
Sbjct: 164 KWVPTTVCAYKQYPEITFNEGEDVVYQVA--------DACPRNVLDANRDDGVIEVIDIE 215
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+ ++ A+A G + + +E+ FIF +E+ G++ +++L A +VL K D
Sbjct: 216 NCSLCKTCVRTAKAAGS-KFINVGYRENDFIFKIETDGSMPPKEVLLKACDVLDAKTD 272
>gi|324508945|gb|ADY43772.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Ascaris suum]
Length = 343
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 151/296 (51%), Gaps = 32/296 (10%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RA 81
+F++ +A +ANA+RR+++AEVPT+A + + + N+S++ DE + HRLGL+P+ ++ R
Sbjct: 47 EFDVIHVEAPIANAMRRILLAEVPTMAFEKIYLYQNTSIIQDEVLCHRLGLLPIRADPRL 106
Query: 82 MSMRFSR---------DCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD------- 124
M ++ D D GD + F L+ C ++ D
Sbjct: 107 FEMPLTKVIGINETGVDVDEEPPGDPKRNLI---FELKVSCKRKPNAPKSATDPQEIFDN 163
Query: 125 --LYSSDHSVVPV-DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+YS +P+ D Y I++ KLR GQE+ R KGIG+DHAK+S
Sbjct: 164 AVVYSKSFEWIPIGDQATSLPYPPNMVHDDILVAKLRPGQEIEARCHCVKGIGRDHAKFS 223
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
P AT ++ P+I I E S E+ + S V ID + G YV DA T
Sbjct: 224 PVATASYRLLPDIVIK----EKFSGEDAERIKNSFSDGVIGIDAD-GFAYVKDARRDTCS 278
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+++ + +E+ ++D FIF+VESTGA+K+S+LV+ A V+++K ++
Sbjct: 279 RNILRHEDLAEH---IELSRRKDHFIFSVESTGALKSSELVVEACRVMEEKCRTLK 331
>gi|126310054|ref|XP_001362696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Monodelphis domestica]
Length = 346
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 162/318 (50%), Gaps = 25/318 (7%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D + ++R +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQSRFEREFRVDVVHMDENSLEFDMIGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R D D + D +++F L+ KC +
Sbjct: 101 VQDEILAHRLGLIPIRADPRLFEYRNQGDEDGTEID------TLQFQLKVKCTRNPQAAK 154
Query: 121 TSKD---------LYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
S D +Y+ + +P+ V P G I+I +LR GQEL L
Sbjct: 155 DSSDPNELYLNHKVYTKHMTWIPLGNQADVFPEGTIRPVHD-DILIAQLRPGQELDLLMH 213
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ P+I + + + E + EE +V D+
Sbjct: 214 CVKGIGKDHAKFSPVATASYRLLPDITLLQPI-EGEAAEELSQCFSPGVIQVQDVK-GKK 271
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
V + T+ E+ + E + K LV + D +IF+VESTG + LV AI+V
Sbjct: 272 VATVANPRLDTFSREIFRH-ENLKK--LVRLARVRDHYIFSVESTGVLPPEVLVSEAIKV 328
Query: 289 LKQKLDAVRLSEDTVEAD 306
L K D+V+ D
Sbjct: 329 LMGKCRRFMDELDSVQMD 346
>gi|196010261|ref|XP_002114995.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
gi|190582378|gb|EDV22451.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
Length = 349
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 159/311 (51%), Gaps = 43/311 (13%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
S+++ K++I ++ ++ +F++ DAS+ANA RR+M++EVP +AI+ V I N+S++ D
Sbjct: 42 SFRKNFKIEIIKVDNEEMEFDMIGIDASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQD 101
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC------HSDQT- 117
E +AHRLGLIP+ ++ + F+ GD S+ F L+ KC HSD T
Sbjct: 102 EVLAHRLGLIPIAADPKLFDNFN------PGDTPTNKNSITFTLQIKCIRNRSAHSDATD 155
Query: 118 -------LDVTSKDL---YSSDH-SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLR 166
VT+KDL Y+ D + +P + P D I+I KLR GQE+ L
Sbjct: 156 PEELYINSKVTTKDLKLKYNEDQDNAIPNKDIRPVHED-------ILIAKLRPGQEIDLE 208
Query: 167 AIARKGIGKDHAKWSPAATVTFM---YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI 223
I KG G DHAK+SP ++ PEI L ++++ + + + P V I
Sbjct: 209 MICVKGTGADHAKFSPVGNNLYLLVWLMPEI----ILKQAVTGKRAKRLAKCFPEGVIGI 264
Query: 224 DPNTG--QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
G Y+ T +V++ E L +I D FIF +ESTG+I + +
Sbjct: 265 KEIKGIKTAYIDKPRLDTCSRQVLRDPELKEHVILNKI---RDHFIFCIESTGSIPPADI 321
Query: 282 VLNAIEVLKQK 292
++++L+QK
Sbjct: 322 FRESVKILRQK 332
>gi|169774489|ref|XP_001821712.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
oryzae RIB40]
gi|238496959|ref|XP_002379715.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
gi|83769575|dbj|BAE59710.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694595|gb|EED50939.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
Length = 373
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 150/311 (48%), Gaps = 54/311 (17%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 79
+ F L DAS+ANA RR+++AEVP++AI+ V + N+SV+ DE +A RLGLIPL + +
Sbjct: 64 SSFSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVD 123
Query: 80 RAMSMRFSRDC--DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSS 128
MR+ + D +G ++ ++ L +C + D T D +Y+
Sbjct: 124 GINWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYAR 183
Query: 129 DHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
D + PV D + P D I+I KLR GQ++ L KGIG DHA
Sbjct: 184 DITFHPVGRQEQFFTGEDAIQPVNPD-------ILIAKLRPGQKIDLEMHCIKGIGADHA 236
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY 231
K+SP AT ++ P+I I + + E+ + + + P V ++P T G Y
Sbjct: 237 KFSPVATASYRLLPDIQI----LRPILGEDAKKFAKCFPKGVIGLEPVTREEAAKQGSGY 292
Query: 232 ----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
V DA T E ++ E GK V++ D FIF +ESTG + L
Sbjct: 293 EGHEGETKAVVRDAFKDTVSRECLRHEEFQGK---VKLGRVRDHFIFNIESTGQFDSDVL 349
Query: 282 VLNAIEVLKQK 292
L +++VLK K
Sbjct: 350 FLESVKVLKLK 360
>gi|339250374|ref|XP_003374172.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
gi|316969579|gb|EFV53647.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
Length = 213
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 104/197 (52%), Gaps = 40/197 (20%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I +L D+ KF L +T S AN LRR+ IAE P + HR
Sbjct: 28 EIDIIQLNDEVIKFSLANTRLSFANCLRRIFIAETPCLV-------------------HR 68
Query: 71 LGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
LGL+PLTS+ +S MRF+R+C D C C+V+ L +C + T V++ DL S D
Sbjct: 69 LGLLPLTSDETVSRMRFARECQCSD---HCSECAVQLTLEKQCRDESTHVVSTADLKSQD 125
Query: 130 HSVVPVD-------------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
V+P+ D G ST III KL RGQEL + +ARKGIGK+
Sbjct: 126 PRVIPLHQFKTDQKNTMHFRLADRNGKLST----KIIIAKLCRGQELNVVCLARKGIGKE 181
Query: 177 HAKWSPAATVTFMYEPE 193
HAKW+P A+V F Y+P+
Sbjct: 182 HAKWNPTASVAFEYDPD 198
>gi|327262314|ref|XP_003215970.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Anolis carolinensis]
Length = 344
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 162/305 (53%), Gaps = 29/305 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + + +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DRTKFEKNFRVDVISMDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
+ DE +AHRLGLIP+ ++ + + + D CD E +++F L+ KC +
Sbjct: 101 VQDEILAHRLGLIPICADPRL-FEYKSEEDECD-----EINTLQFQLKIKCSRNPEAPKE 154
Query: 122 SKD---LYSSDHSVVP--VDFVDPAGYDSTDQQRG-------IIIVKLRRGQELRLRAIA 169
S D LY +H V +++V P G + + G I+I +LR GQE+ +
Sbjct: 155 SSDPNELY-INHKVYSKHMEWV-PLGSQADNMNAGFRPVHDDILIAQLRPGQEIDVLMHC 212
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L++ + E + + + V +++ G+
Sbjct: 213 VKGIGKDHAKFSPVATASYRLLPDI----TLLKPVEGETAEKLKKCFSSGVIEVEEIKGK 268
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V +A T+ E+ + + LV + D +IF+VESTG + LV AI+
Sbjct: 269 KVARVANARLDTFSREIFRHDDLK---NLVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 325
Query: 288 VLKQK 292
+L K
Sbjct: 326 ILIGK 330
>gi|330921707|ref|XP_003299536.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
gi|311326761|gb|EFQ92375.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
Length = 376
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 153/319 (47%), Gaps = 47/319 (14%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F L D S+ANA RR++++E+PT+AI+ V I N+S++ DE +AHRLGLIPL +RA
Sbjct: 62 AQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRA 121
Query: 82 MSMR----FSRDCDACDGDGQCEFC-SVEFHLRAKC-------------HSDQTLDVTSK 123
S+R +++ D +G G C +V L+A C +D
Sbjct: 122 -SLRAMKWYAKPTDEDEGSGNPTSCNTVALELKAMCTWQPGGLARAVAGETDPDKLYVGH 180
Query: 124 DLYSSDHSVVP-----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
++Y+ D P +F G I+I K+R GQE+ LR A KGI +DHA
Sbjct: 181 NVYAKDIRFEPNGDQAQNFSQAEGKHIRSTNPDILICKMRPGQEINLRMHAIKGISQDHA 240
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG---------- 228
K+SP AT ++ P I I + ++ + + + + P+ V +D T
Sbjct: 241 KFSPVATASYRLMPTIDITKPIVGA----DAKKFSRCFPSGVIRLDTVTSADIEKHPELE 296
Query: 229 ------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
+ V + T E ++ E K L I D FIF VESTG ++ +L
Sbjct: 297 GKEGEPKAVVENPMNDTVSRECLRHPEFKDKVKLGRI---RDHFIFRVESTGQWESDELF 353
Query: 283 LNAIEVLKQKLDAVRLSED 301
L ++++LK K ++ D
Sbjct: 354 LESVKLLKIKCQRIKRGLD 372
>gi|422293779|gb|EKU21079.1| DNA-directed RNA polymerase II subunit RPB3, partial
[Nannochloropsis gaditana CCMP526]
Length = 121
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 79/106 (74%), Gaps = 8/106 (7%)
Query: 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
R PK++I ELKDD+ KF L DTDAS+ANALRRVMIAEVPT+AIDLV EVNSSVLNDE++
Sbjct: 5 RAPKLEILELKDDFIKFILSDTDASVANALRRVMIAEVPTLAIDLVSFEVNSSVLNDEYL 64
Query: 68 AHRLGLIPLTSERAMSMRFSRDCDA-----CDGDGQCEFCSVEFHL 108
AHRLGLIPL R+++ R+ + D CD D C CSVE L
Sbjct: 65 AHRLGLIPL---RSVNPRYKKVADLKDFRDCDCDSHCSRCSVELSL 107
>gi|452210696|ref|YP_007490810.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
gi|452100598|gb|AGF97538.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
Length = 258
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 141/291 (48%), Gaps = 42/291 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I EL D AKF L + AN +RR MIA+VPT+AI+ V + N+SVL DE +A R
Sbjct: 4 EVDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPL ++ M +C+ C G+G C C V L A + V S+DL SSD
Sbjct: 64 LSLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTLSA----EGPGTVYSRDLISSDP 117
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
+ P D I IV+L++GQ+L L AIA G G+D KW +
Sbjct: 118 KIQPAD-------------PNIPIVELKKGQKLVLEAIAHMGYGRDSVKWQAGVACGYKN 164
Query: 191 EPEIHI-NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA- 248
P I I N D + E + G + V +A A +D++IK +
Sbjct: 165 VPVITIENCDACGHCAAECPK-----------------GIIRVEEAGARIAEDDLIKCSL 207
Query: 249 ----EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
E + +++ E++F+FT+ES G+ A L +NA V+K K A
Sbjct: 208 CRLCEQVCDINAIKVDFYENAFVFTMESDGSYTAKDLTINAANVIKGKASA 258
>gi|396471375|ref|XP_003838857.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
gi|312215426|emb|CBX95378.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
Length = 374
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 151/325 (46%), Gaps = 39/325 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+ K F L D S+ANA+RR++IAE+P++AI+ V I N+S++ DE +AHR
Sbjct: 51 KVQFHSHKPYDTSFSLVSIDTSVANAIRRILIAEIPSLAIEDVFIYQNTSIIQDEVLAHR 110
Query: 71 LGLIPLTSE----RAMSMRFSRDCDACDGDG-QCEFCSVEFHLRAKCH-SDQTLDV---- 120
LGLIPL R M F + DG G Q ++ ++ L KC D L
Sbjct: 111 LGLIPLCGSCDGLRWMKW-FHKATGLEDGSGTQSDYNTIVLRLNKKCEWQDGGLQRAVAG 169
Query: 121 -TSKDLYSSDHSVVPVDFVD----------PAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
T D +H+V D + P G + I+I K+R GQE+ L A
Sbjct: 170 ETDPDKLYINHNVYARDMIWEPIGRQAQMFPPGAEIRSTNPDILIAKMRPGQEIALSMHA 229
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIG+DHAK+SP AT ++ P I D+ E ++ + + + P V +D T
Sbjct: 230 HKGIGQDHAKFSPVATASYRLLPTI----DITEPITGPDAKKFARCFPRGVIRLDTVTAA 285
Query: 230 VYVVDAEAYTYDDEVIK----------KAEAMGKPGL---VEIYAKEDSFIFTVESTGAI 276
D DE + E + P V++ D FIF +ESTG
Sbjct: 286 HIAQDPRLAGKQDESLAVVEDPMNDTVSRECLRHPEFKDKVKLGRVRDHFIFRIESTGQW 345
Query: 277 KASQLVLNAIEVLKQKLDAVRLSED 301
++ +L L ++++L+ K ++ D
Sbjct: 346 ESDELFLESVKLLRVKCQRIKRGLD 370
>gi|330040504|ref|XP_003239937.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
gi|327206863|gb|AEA39039.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
Length = 301
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 149/300 (49%), Gaps = 46/300 (15%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F L ++ N+LRR ++ ++PT+++DLV IE NSS+L+DEFIAHRL L+PL S+ +
Sbjct: 13 FFLNKSNFCYLNSLRRTIMGDMPTLSVDLVYIEKNSSLLHDEFIAHRLSLLPLDSQNIKN 72
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLR-------AKCHSDQTLDVTSKDLYSSDHSVVPVD 136
+ +S DC+ + C+ CS F L S L+V+S+ +
Sbjct: 73 LNYSMDCEC---NSYCQLCSRVFELNIIANENLKHVFSTHLLEVSSQKYSLERKPNLLNQ 129
Query: 137 FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
+ +DS III KL +GQ ++L +A+KG GK HAKW+P + + F E + I
Sbjct: 130 HLKKINFDSE-----IIITKLTKGQSIKLICVAKKGTGKMHAKWNPVSNIRFKAEYSMKI 184
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVD------AEAYTYDDEVIKKAEA 250
N +++L++ K++ ++ +K FD ++V D + Y E
Sbjct: 185 N---LKNLNILLKKN-LKQKISKDFD------NLFVYDNLNDRIKFSNIYFKNRFFLLEQ 234
Query: 251 MGKPGLVEIYAKE--------------DSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
M L+ + +E +F ++ESTG + ++ AI ++KQKL+ +
Sbjct: 235 MA-GSLINFFLRETLNPLDFLMLDKNTKTFYISLESTGTLNCKFILKEAISLIKQKLNIL 293
>gi|308508009|ref|XP_003116188.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
gi|308251132|gb|EFO95084.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
Length = 366
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 157/300 (52%), Gaps = 35/300 (11%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT----- 77
+F++ +A +ANALRRV+IAEVPT+A++ + + N+SV+ DE + HRLGL+PL
Sbjct: 69 EFDITHIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLCVDPRG 128
Query: 78 ----SERAMSMR-FSRDCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD------- 124
+E+ + + DCD GD F + C ++ S D
Sbjct: 129 FQFPTEKVVGINEKGVDCDEEPAGDATRNLI---FKINVSCTKNRNALPNSTDPKTLYHH 185
Query: 125 --LYSSDHSVVPVDFVDPAGYDSTDQQR---GIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+YS + VP+ DST + I++ KLR GQE+ A KGIG+DHAK
Sbjct: 186 SSVYSGSFAWVPIGDQKSNYTDSTTPRMVTDDILVAKLRPGQEIEASCHAVKGIGRDHAK 245
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN-TGQVYVV-DAEA 237
+SP AT ++ P I +N ++ + K + E V +I+ + +V VV DA
Sbjct: 246 FSPVATASYRLLPTIRLNAEITGEAAERLKSVFSEG----VIEIEKKGSKRVAVVKDARK 301
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T V + E + K +V++ + FIF+VESTGA+K+S+LV+ A +V++ K ++R
Sbjct: 302 DTCSRNVFRH-EDLAK--VVQLGKNKQHFIFSVESTGALKSSELVVEACKVMETKCRSLR 358
>gi|330840939|ref|XP_003292464.1| RNA polymerase III subunit [Dictyostelium purpureum]
gi|325077271|gb|EGC30994.1| RNA polymerase III subunit [Dictyostelium purpureum]
Length = 338
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 146/279 (52%), Gaps = 34/279 (12%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAM 82
FE+ DA +ANA+RR++I+EVPT+AI+ V I N+S+L DE +AHRLGLIP+ + R
Sbjct: 79 FEMMGVDAPIANAIRRILISEVPTMAIEKVYIINNTSILQDEVLAHRLGLIPIKVDPRKF 138
Query: 83 SMRF-SRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
+ +++ A D ++ F L+ KC D + + + S VP D
Sbjct: 139 NFHLPNKEYTAED--------TLIFKLKVKCERDANGKIINDTVLSKHLEWVPHDDQIAM 190
Query: 142 GYDSTDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
+ D R I I++LR GQ + ++ K IG++H KWSP T ++ P I ++
Sbjct: 191 FPNEEDHPRPVEDDIPIMRLRPGQVIDVQLYCEKNIGREHIKWSPVCTASYRLLPVISVD 250
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLV 257
ES+ E + V + P KVFDI+ ++G V V + +++ + +
Sbjct: 251 ----ESIQGESAEKLVNTCPKKVFDIE-DSGSV-------------VAARIQSLNQK--L 290
Query: 258 EIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
D FIF++ESTGA+ + +L AI++L +K + V
Sbjct: 291 NFERIRDHFIFSIESTGALTSRELFQEAIKILIEKCNIV 329
>gi|402224041|gb|EJU04104.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 362
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 143/303 (47%), Gaps = 31/303 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V ++ L F+L TDA++ANALRR+MI EV TIA++ V + N+SV+ DE +A R
Sbjct: 47 QVDVKRLTPTTIDFDLVGTDAAIANALRRIMIGEVETIAVENVWVWQNTSVMQDEVLASR 106
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD------ 124
LGL+PL A ++ + D + ++ F ++ C S S D
Sbjct: 107 LGLVPLRINPARLESWTPNAVPTDAN------TISFEVQVTCTSRPFPPRGSTDPSELYE 160
Query: 125 ---LYSSDHSVVPVD--------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
+Y+S PV DP D I++VKLR GQEL + K
Sbjct: 161 NSSIYASHLRWKPVGAQAALPDWLADPPSVAKPD----IVLVKLRPGQELNIEMHCVKSC 216
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
G+DHAK+SP AT T+ P I I + + E L + QS+ K + +V+V
Sbjct: 217 GRDHAKYSPVATATYRLLPYIQILKPIPEQLQAKFMQSFSPGVMGKRRNKQ-EEWEVFVK 275
Query: 234 DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
DA T V E G L + D F+FT+ES G + + ++ AI V ++KL
Sbjct: 276 DARKDTMSRNVFLYPEFEGAVKLTRV---RDHFLFTIESAGQMAPNAILPEAIAVFRRKL 332
Query: 294 DAV 296
V
Sbjct: 333 RTV 335
>gi|284162138|ref|YP_003400761.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
gi|284012135|gb|ADB58088.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
Length = 261
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 147/283 (51%), Gaps = 36/283 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I E D +F L + ++AN+ RR M + VPT+A+D V +N+S L DE IAHR
Sbjct: 2 RIEILEESDLKVRFILHNAPIALANSFRRAMKSLVPTMAVDYVVFYMNTSFLYDEIIAHR 61
Query: 71 LGLIPLTSERAMSMRFSR-DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
+GLIP+ ++ RF+ D C G+G C C V F L + + V S DL S D
Sbjct: 62 IGLIPIKTDLE---RFNMPDKCVCGGEG-CPNCQVSFRL----NVEGPKVVYSGDLISED 113
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ PV YD+ I IV+L GQ+L + A+AR G GK+HAK+ P + +
Sbjct: 114 PEIKPV-------YDN------IPIVELYEGQQLMIEAVARLGTGKEHAKYQPVSACYYK 160
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
PEI + ++ + V + P + ++ G+V V D + + E +K E
Sbjct: 161 IIPEIIVKDNCNNC------GNCVSACPRNILRLN---GKVEVTDILSCSMCRECVKVCE 211
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+++ + D+++F VE TGA+ ++ A+E+LK+K
Sbjct: 212 E----NAIDV-VETDNYLFAVEGTGALPVKVVMKKALEILKEK 249
>gi|223477958|ref|YP_002582352.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
gi|214033184|gb|EEB74012.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
Length = 260
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 143/296 (48%), Gaps = 60/296 (20%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK +I E + D KF LR D ANALRR ++AEVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEILERRGDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RL +IPLT+ RFS D+ D D +V L+A+ V S DL S D
Sbjct: 63 RLAMIPLTTP---VERFS--LDSLDLDD----YTVTLSLQAEGPG----MVYSGDLKSDD 109
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V P + I IVKL GQ+L A AR G GKDHAKW P V +
Sbjct: 110 EGVKPAN-------------PNIPIVKLAEGQKLTFNAYARLGRGKDHAKWQP-GFVYYK 155
Query: 190 YEPEIHIN------EDLME-----SLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
Y EIH++ E+L E L +EEK+ + TK F + P + Y E
Sbjct: 156 YLTEIHVSKEVPDWEELKELAERRGLPVEEKEDEIVIKTTKAFYL-PRKFEEY----EGD 210
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+E+I PG +F+FTVE+ G + ++V A+++L +K D
Sbjct: 211 KIREEII--------PG---------AFVFTVETNGELPVEEIVSIALKILMRKSD 249
>gi|49618929|gb|AAT68049.1| RNA polymerase I 140 kDa subunit [Danio rerio]
Length = 343
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 161/315 (51%), Gaps = 44/315 (13%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D +++F K ++I ++ +F++ DA++ANA RR+++AEVPT+AI+ V I N
Sbjct: 35 DTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNN 94
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
+S++ DE +AHRLGL+P+ ++ R R S D + + D +++ L+ KC +
Sbjct: 95 TSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPR 148
Query: 118 LDVTSKD---------LYSSDHSVVPVD-----FVD----PAGYDSTDQQRGIIIVKLRR 159
S D +YS D +P+ F D P D I++ ++R
Sbjct: 149 APKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKIGPVHGD-------ILLAQVRP 201
Query: 160 GQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTK 219
GQEL + KGIGK+HAK+SP AT ++ PEI L++++ E+ +
Sbjct: 202 GQELDIVMHCVKGIGKNHAKFSPVATASYRLLPEI----TLLQTIEGEQAERLKRCFSPG 257
Query: 220 VFDIDPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 277
V +++ G+ VV++ T EV++ + LV++ D FIF+VESTG +
Sbjct: 258 VIELENVNGRKVAKVVNSRLDTCSREVLRHDDLK---SLVKLGRVRDHFIFSVESTGILP 314
Query: 278 ASQLVLNAIEVLKQK 292
LV AI VL K
Sbjct: 315 PDVLVTEAINVLMSK 329
>gi|336372326|gb|EGO00665.1| hypothetical protein SERLA73DRAFT_178536 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385070|gb|EGO26217.1| hypothetical protein SERLADRAFT_447454 [Serpula lacrymans var.
lacrymans S7.9]
Length = 363
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 161/321 (50%), Gaps = 36/321 (11%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
QR KVK++ L +F+L TDAS+ANA RR++IAEVPTI+++ V + N+SV+ DE
Sbjct: 50 QRL-KVKVQRLSGRSIEFDLVGTDASIANAFRRILIAEVPTISVERVYVWDNTSVVVDEI 108
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-- 124
+A R+GL+PL + A D D + ++ F L+ C ++ S D
Sbjct: 109 LAQRIGLVPLNVDPAW-----MDTKETTNDQATDRNTLVFRLKVACERNKNAPKGSTDPR 163
Query: 125 -LYSSDHSVVPVDFVDPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKGIGK 175
+Y + + +P G +T I++ KLR GQE+ + A KG+GK
Sbjct: 164 EMYINSDVLSSHLEWEPQGEQATVFASSPPAPTNPNIVLGKLRPGQEIDIEMHAVKGVGK 223
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA 235
DHAK+ P AT ++ P + +N + L EK + + V +DP T
Sbjct: 224 DHAKFCPVATASYRLLPLVILNPEKPVPPHLAEK--FQKCFSPGVIRVDPQT-------- 273
Query: 236 EAYTYDDEVIKKAEAMGK--------PGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
+A + D++ ++K E+M + G ++ D F+F++ES G +L+ +I
Sbjct: 274 KAISLDEQNMRK-ESMSREVYRHPEFEGCTQLARVRDHFLFSIESEGFYPPERLLPESIS 332
Query: 288 VLKQKLDAVRLSEDTVEADDQ 308
V++ K+ +R + + + AD+
Sbjct: 333 VMRGKIANIRRAAEALLADNN 353
>gi|189203213|ref|XP_001937942.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985041|gb|EDU50529.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 376
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 151/318 (47%), Gaps = 45/318 (14%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F L D S+ANA RR++++E+PT+AI+ V I N+S++ DE +AHRLGLIPL +RA
Sbjct: 62 AQFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRA 121
Query: 82 MSMR---FSRDCDACDGD-GQCEFCSVEFHLRAKC-------------HSDQTLDVTSKD 124
R +++ D +G G +V L+ KC +D +
Sbjct: 122 TLRRMKWYAKPTDEDEGSGGPTSENTVALTLKTKCTWQPGGVARAVAGETDPDRLYVGHN 181
Query: 125 LYSSDHSVVPV-----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+Y+ D P + + G I+I K+R GQEL +R A KGIG+DHAK
Sbjct: 182 VYAKDMRFEPNGNQAENLSEAEGKHIRSTNPDILICKMRPGQELEIRMHAIKGIGQDHAK 241
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG----------- 228
+SP AT ++ P I I + ++ + + + + P+ V +D T
Sbjct: 242 FSPVATASYRLMPTIDITKPIVGA----DAKKFSRCFPSGVIRLDTVTSADIEKHPELEG 297
Query: 229 -----QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
+ V + T E ++ E K L I D FIF VESTG ++ +L L
Sbjct: 298 KEGEPKAVVANPMNDTVSRECLRHPEFKDKVKLGRI---RDHFIFRVESTGQWESDELFL 354
Query: 284 NAIEVLKQKLDAVRLSED 301
++++LK K ++ D
Sbjct: 355 ESVKLLKIKCQRIKRGLD 372
>gi|440902447|gb|ELR53239.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos grunniens
mutus]
Length = 343
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 163/318 (51%), Gaps = 37/318 (11%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R D +G E +++F L+ +C +
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPHAAK 154
Query: 121 TSKD------LYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
S D +Y+ + VP+ F + A D I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVMYTRHMTWVPLGNQADLFPEGAIRPVHDD---ILIAQLRPGQEIDLLMHC 211
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 212 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEIQGK 267
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ EV + E + K +V + D FIF+VESTG + LV AI+
Sbjct: 268 KVARVANPRLDTFSREVFRN-EKLKK--VVRLARVRDHFIFSVESTGVLPPDVLVSEAIK 324
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 325 VLMGKCQRFLDELDAVQM 342
>gi|367044228|ref|XP_003652494.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
gi|346999756|gb|AEO66158.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
Length = 374
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 152/332 (45%), Gaps = 55/332 (16%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++R +V+ + A F L DAS+ANA RR+MIA++PT+AI+ V I N+SV
Sbjct: 44 DIEAFKRNFRVEFHQNDPFEASFSLIGCDASIANAFRRIMIADIPTLAIETVFINNNTSV 103
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQC-----EFCSVEFHLRAKC---- 112
+ DE ++HRLGLIP + +F + + Q +F +V L KC
Sbjct: 104 IQDEVLSHRLGLIPFRGGKEGLHKFLKWWRKPADESQINNSYYDFNTVSLRLEVKCEYNE 163
Query: 113 -----HSDQTLDVTSKDLYSSDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKL 157
+D T +Y+ D PV D + P D I+I KL
Sbjct: 164 AAAPGETDPTKLYKHAHVYARDIEFCPVGRQEKYFSGADAIAPVNPD-------ILIAKL 216
Query: 158 RRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSP 217
R GQE+ L KG+G DHAK+SP AT ++ P I I ++ + + + P
Sbjct: 217 RPGQEISLSMHMHKGVGSDHAKFSPVATASYRLLPIIKIERPILG----RDAEKFARCFP 272
Query: 218 TKVFDIDPNT-------GQVY----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIY 260
V ++ T G Y VVD T E ++ E GK V++
Sbjct: 273 PGVIGLEKVTKKEAAQKGSGYEGHEGELKAVVVDPMRDTVSRECLRHPEFQGK---VKLG 329
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
K+D FIF VESTG ++ + + A+ LK+K
Sbjct: 330 RKKDHFIFLVESTGQWESDAIFMEAVAHLKKK 361
>gi|147901420|ref|NP_001085237.1| polymerase (RNA) I polypeptide C, 30kDa [Xenopus laevis]
gi|47937458|gb|AAH72033.1| MGC78824 protein [Xenopus laevis]
Length = 347
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 155/307 (50%), Gaps = 38/307 (12%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+++ ++ I +++DD +F++ DAS+ANA RR++++EVPT+A++ V + N+S++ DE
Sbjct: 45 FEKNFRIDIVKMEDDILEFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDE 104
Query: 66 FIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH---------SD 115
+AHRLGLIP+ ++ R R + D + + D +++F L KC SD
Sbjct: 105 ILAHRLGLIPIRADPRLFEYRSADDAEGTEID------TLQFELNVKCTRNPRASKDCSD 158
Query: 116 QTLDVTSKDLYSSDHSVVP----VDFVDPAGYDSTDQQRG----IIIVKLRRGQELRLRA 167
+ +Y+ +P VD + TD R I+I +LR GQE+ +
Sbjct: 159 PNELYLNHKVYTGHMKWLPQGNQVDL-----FPETDPPRPVHKDILIAQLRPGQEINVIM 213
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT 227
KGIGKDHAK+SP AT ++ PE+ L+ S+ E V +D
Sbjct: 214 HCVKGIGKDHAKFSPVATASYRLLPEV----TLLSSIEGELADKLQGCFSPGVISVDEVN 269
Query: 228 GQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNA 285
G+ V +A T E+ + + LV + D +IF+VESTG + LV A
Sbjct: 270 GKRVARVENARMDTCSREIFRHDDLK---NLVRMARVRDHYIFSVESTGILPPDILVSEA 326
Query: 286 IEVLKQK 292
I+VL K
Sbjct: 327 IKVLMGK 333
>gi|194856389|ref|XP_001968740.1| GG25034 [Drosophila erecta]
gi|190660607|gb|EDV57799.1| GG25034 [Drosophila erecta]
Length = 329
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 153/298 (51%), Gaps = 29/298 (9%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI + +D +F+L ++ANA RR+M+++VP++AI+ V I N+S++ DE +AHR+
Sbjct: 39 IKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 98
Query: 72 GLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSS 128
GL+PL ++ R + R +A E ++EF L+ KC D D ++ D
Sbjct: 99 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 153
Query: 129 DHSVVPVDF-VDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAK 179
+H V P G + I+I +LR G EL LR +A KG+G+DHAK
Sbjct: 154 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAK 213
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESS--PTKVFDIDPNTGQVYVVDAEA 237
+SP AT T+ P+I +N + + K +++ S V ID N YV DA
Sbjct: 214 FSPVATATYRLLPQIKLNRE------VSGKDAYLLQSCFSPGVIGIDENE-TAYVKDARY 266
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
T V + + L I D +IF+VES GA+K + L A++VLK+K A
Sbjct: 267 DTCSRNVYRYPQLNDAVTLSRI---RDHYIFSVESVGALKPDVIFLEAVKVLKRKCRA 321
>gi|134056600|emb|CAK47675.1| unnamed protein product [Aspergillus niger]
Length = 359
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 149/297 (50%), Gaps = 40/297 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 79
+ F L DAS+ANA RR+++AEVP+IAI+ V + N+SV+ DE +A RLGLIPL + E
Sbjct: 64 SSFSLIGVDASIANAFRRILMAEVPSIAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVE 123
Query: 80 RAMSMRFSRDC--DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSS 128
MR+ + D +G ++ ++ L +C + D D +Y+
Sbjct: 124 GINWMRWFKKPTDDDPNGSSPADYNTIVLRLDVECTKNPNADPEETDPRKLYKNAHVYAK 183
Query: 129 DHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
D + PV D + P D I++ KLR GQ + + KGIG DHA
Sbjct: 184 DITFHPVGRQEQFFAGDDAIQPVNPD-------ILVAKLRPGQAIEMELHCIKGIGADHA 236
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDP-NTGQV--YVVDA 235
K+SP AT T+ P+I I + + ++ + + + P+ V ++ + G++ VVD
Sbjct: 237 KFSPVATATYRLLPDIKI----LRPIIGDDAKKFAKCFPSGVIGLEKGHEGELKAVVVDP 292
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
T E ++ E GK V++ D FIF +ES G ++ L L +++VLK K
Sbjct: 293 FKDTVSRECLRHEEFQGK---VKLGRVRDHFIFNIESVGQFESDTLFLESVKVLKLK 346
>gi|20129237|ref|NP_608885.1| CG3756 [Drosophila melanogaster]
gi|7296912|gb|AAF52185.1| CG3756 [Drosophila melanogaster]
gi|21429120|gb|AAM50279.1| LP03982p [Drosophila melanogaster]
Length = 333
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 152/297 (51%), Gaps = 25/297 (8%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI +D +F+L ++ANA RR+M+++VP++AI+ V I N+S++ DE +AHR+
Sbjct: 43 IKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 102
Query: 72 GLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSS 128
GL+PL ++ R + R +A E ++EF L+ KC D D ++ D
Sbjct: 103 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 157
Query: 129 DHSVVPVDFV-DPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAK 179
+H V P G + I+I +LR G EL LR +A KG+G+DHAK
Sbjct: 158 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAK 217
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP AT T+ P I +N ++ + + + SP V ID N YV DA T
Sbjct: 218 FSPVATATYRLLPMIKLNREVTGKDAYLLQNCF---SPG-VIGIDENE-TAYVKDARYDT 272
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
V + + L I D +IF+VES GA+K + L A++VLK+K A+
Sbjct: 273 CSRNVYRYPQLNDAVTLARI---RDHYIFSVESVGALKPDVIFLEAVKVLKRKCRAL 326
>gi|195472829|ref|XP_002088701.1| GE11271 [Drosophila yakuba]
gi|194174802|gb|EDW88413.1| GE11271 [Drosophila yakuba]
Length = 333
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 29/305 (9%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
+Y+ +KI + +D +F+L ++ANA RR+M+++VP++AI+ V I N+S++ D
Sbjct: 36 AYKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQD 95
Query: 65 EFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVT 121
E +AHR+GL+PL ++ R + R +A E ++EF L+ KC D D +
Sbjct: 96 EVLAHRMGLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQS 150
Query: 122 SKDLYSSDHSVVPVDF-VDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKG 172
+ D +H V P G + I+I +LR G EL LR +A KG
Sbjct: 151 NFDDIYKNHKVYSGHLKWLPKGKQAQIYNESAVNCIHDDILIAQLRPGHELDLRLVAVKG 210
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESS--PTKVFDIDPNTGQV 230
+G+DHAK+SP AT T+ P I +N + + K +++ S V ID N
Sbjct: 211 LGRDHAKFSPVATATYRLLPLIKLNRE------VSGKDAYLLQSCFSPGVIGIDENE-TA 263
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
YV DA T V + + L I D +IF+VES GA+K + L A++VLK
Sbjct: 264 YVKDARYDTCSRNVYRYPQLNDAVTLARI---RDHYIFSVESVGALKPDVIFLEAVKVLK 320
Query: 291 QKLDA 295
+K A
Sbjct: 321 RKCRA 325
>gi|297837401|ref|XP_002886582.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
gi|297332423|gb|EFH62841.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
Length = 376
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 157/323 (48%), Gaps = 47/323 (14%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G Y+ F KV + L +F++ DA+ ANA RR++IAE+P++AI+ V I N+SV+
Sbjct: 68 GNFYENF-KVDVISLTKTDMEFDMIGIDAAFANAFRRILIAELPSMAIEKVLIAYNTSVI 126
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVT 121
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------ENDQANEKNTIVFKLHVKCPKNRPRLKVL 180
Query: 122 SKDL-------------------------YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVK 156
+ DL +S +P +F A T I+I K
Sbjct: 181 TSDLKWLPNGSEFLRESGGSTSKPKTYTSFSCSQDSLP-EF---ANNPITPCDLDILIAK 236
Query: 157 LRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESS 216
L GQE+ L A A KGIGK HAKWSP T + PE+ + ++ + L+ + V+
Sbjct: 237 LAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVKVC 292
Query: 217 PTKVFDI-DPNTG--QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVEST 273
P VFDI D G + V T E ++ + + + V++ + + FIF +EST
Sbjct: 293 PQNVFDIEDMGKGRKRATVAQPRKCTLCQECVRDDDLVER---VDLGSVRNHFIFNIEST 349
Query: 274 GAIKASQLVLNAIEVLKQKLDAV 296
G++ L A+++L+ K + V
Sbjct: 350 GSLTPDVLFTEAVKILEAKCETV 372
>gi|21228260|ref|NP_634182.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
gi|23822085|sp|Q8PV16.1|RPOD_METMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|20906717|gb|AAM31854.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
Length = 266
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 42/288 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I EL D AKF L + AN +RR MIA+VPT+AI+ V + N+SVL DE +A R
Sbjct: 4 EVDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPL ++ M +C+ C G+G C C V L A + V S+DL SSD
Sbjct: 64 LSLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTLSA----EGPGTVYSRDLISSDP 117
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
+ P D I IV+L++GQ+L L AIA G G+D KW +
Sbjct: 118 KIQPAD-------------PNIPIVELKKGQKLVLEAIAHMGYGRDSVKWQAGVACGYKN 164
Query: 191 EPEIHI-NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA- 248
P I I N D + E + G + V +A A +D++IK +
Sbjct: 165 VPVITIENCDACGHCAAECPK-----------------GIIRVEEAGARIAEDDLIKCSL 207
Query: 249 ----EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
E + +++ E++F+FT+ES G+ A L +NA V+K K
Sbjct: 208 CRLCEQVCDINAIKVDFYENAFVFTMESDGSYTAKDLTINAANVIKGK 255
>gi|346324382|gb|EGX93979.1| DNA-directed RNA polymerases I [Cordyceps militaris CM01]
Length = 380
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 146/312 (46%), Gaps = 54/312 (17%)
Query: 21 YAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80
+A F L DAS+ANA RR++IAE+PT+AI+ V IE N+SV+ DE +AHRLGLIP R
Sbjct: 70 HAAFSLIGLDASLANAFRRILIAEIPTLAIENVFIENNTSVIQDEVLAHRLGLIPFQGGR 129
Query: 81 AMSMRF----SRDCDACDG-DGQCEFCSVEFHLRAKC---------HSDQTLDVTSKDLY 126
A F + DA D G ++ +V L C +D T + +Y
Sbjct: 130 AGLQDFLKWYKKPADAEDDYAGGFDYNTVRLELNVTCTPNKDAAPGETDPTKAYHNAHVY 189
Query: 127 SSDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
+ D VP+ D + P D I+I K+R Q + L KGIG D
Sbjct: 190 ARDIVFVPMGEQETYFSGADAIAPVNPD-------ILIAKMRPKQTINLSMHMHKGIGAD 242
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF--------DIDPNTG 228
HAK+SP AT ++ P I I + + + + + P+ V D P +G
Sbjct: 243 HAKFSPVATASYRLMPVIKI----LRPIVGADAEKFQACFPSGVIGLQKVTKKDATPGSG 298
Query: 229 --------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQ 280
+ V D T E ++ E GK V++ + D FIF++ESTG + +
Sbjct: 299 LEKAVGQMRAVVEDPMRDTVSRECLRHPEFEGK---VKLGRRRDHFIFSIESTGQWDSDE 355
Query: 281 LVLNAIEVLKQK 292
L L +++ LK K
Sbjct: 356 LFLESVKHLKMK 367
>gi|432329920|ref|YP_007248063.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
gi|432136629|gb|AGB01556.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
Length = 276
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 148/308 (48%), Gaps = 45/308 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++ L D A+F L + ANA RR MI EVPT+AI+ V I N+S L DE +AHR
Sbjct: 2 EIEFASLDDSLARFTLSGASPAFANAFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL ++ +S+ ++D +C G G C C+ + L + VTS DL D
Sbjct: 62 LGLIPLKTD--LSVYSTQDTCSCGGAG-CPGCTATYTLSV----EGPRMVTSSDLIPQDP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
PV YD+ I IVKL +GQ+L + A A G+ HAKW +
Sbjct: 115 GAAPV-------YDN------IPIVKLTKGQKLVIEARAILNTGRAHAKWQSTLVCGYKN 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE- 249
P I ++ D+ ++ + VE P + QV AE + + + E
Sbjct: 162 HPVITVS-DVCDACGM-----CVEECPRDILVAKGKKVQV----AEGKLPECSMCRLCER 211
Query: 250 -----AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
+G+ ++I A+ D FIF VES G++ A +++ A+ ++++ D E
Sbjct: 212 ACLASGIGEEPAIKISAEPDRFIFVVESDGSLPAKEIMNRALSFIREQAD---------E 262
Query: 305 ADDQFGEL 312
+ Q GEL
Sbjct: 263 LEQQLGEL 270
>gi|145349074|ref|XP_001418965.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579195|gb|ABO97258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 360
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 145/300 (48%), Gaps = 33/300 (11%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
FEL + ANA RR++++EVPT+AI+ V + N+SV+ DE AHRLGL+P+ ++ AM
Sbjct: 63 FELEGCSPAFANAFRRIILSEVPTMAIEKVFVVNNTSVVADEVFAHRLGLVPIKADPAMF 122
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD-----VTSKDLYSSDHSVVP---- 134
+GD E ++ + +CH ++ D V ++ +YS+ + P
Sbjct: 123 EYRG------EGDAANETNTIVLKMHVRCHKERNPDGTLGEVVNRSVYSNALTWCPEGSQ 176
Query: 135 ---------VDFVDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAKW 180
DF DQ+ G I++VKL GQE+ L KGIG++HAKW
Sbjct: 177 LPEENGAKYSDFKRSQKEVVGDQELGCVHDDILLVKLAPGQEVELECHCVKGIGQEHAKW 236
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPT-KVFDIDPNTGQVYVVDAEAYT 239
SP T + PEI I E + + + E + S T K + + + V E+
Sbjct: 237 SPVGTCWYKMVPEITILEPITGADADEFMKKCANFSETHKCYACEGKGDKKTVKVVESRG 296
Query: 240 YDDEVIKKAEAMGKPGL---VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
D V + E G+PG + + ++D FIFT+E+ G + + A+++L K V
Sbjct: 297 CDFCVERVRELTGEPGWADKIAVRKRKDHFIFTIETIGQMAPGTIFKEAVKILASKAQNV 356
>gi|195576648|ref|XP_002078187.1| GD23312 [Drosophila simulans]
gi|194190196|gb|EDX03772.1| GD23312 [Drosophila simulans]
Length = 333
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 152/297 (51%), Gaps = 25/297 (8%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI +D +F+L ++ANA RR+M+++VP++AI+ V I N+S++ DE +AHR+
Sbjct: 43 IKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 102
Query: 72 GLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSS 128
GL+PL ++ R + R +A E ++EF L+ KC D D ++ D
Sbjct: 103 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 157
Query: 129 DHSVVPVDF-VDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAK 179
+H V P G + I+I +LR G EL LR +A KG+G+DHAK
Sbjct: 158 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAK 217
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP AT T+ P I +N ++ + + + SP V ID N YV DA T
Sbjct: 218 FSPVATATYRLLPLIKLNREVTGKDAYLLQNCF---SPG-VIGIDENE-TAYVKDARYDT 272
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
V + + L I D +IF+VES GA+K + L A++VLK+K A+
Sbjct: 273 CSRNVYRYPQLNDAVTLARI---RDHYIFSVESVGALKPDVIFLEAVKVLKRKCRAL 326
>gi|339251862|ref|XP_003371154.1| putative biotin--protein ligase [Trichinella spiralis]
gi|316968644|gb|EFV52901.1| putative biotin--protein ligase [Trichinella spiralis]
Length = 798
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 135/295 (45%), Gaps = 82/295 (27%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+I L DD +F L++ +ID V I N+SV DEFIAHR+
Sbjct: 21 VEILYLNDDIFRFVLKN--------------------SIDTVTIHSNTSVFCDEFIAHRI 60
Query: 72 GLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
GLIPLTS+ + +R+SRDC G C C++ ++ KC + TS DL S D
Sbjct: 61 GLIPLTSDNVVERLRYSRDCPCMGG---CNECAIHLNIDKKCFTHNGDFATSADLKSQDS 117
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP LR GQEL + +ARKGIGK+HAKW+P A V F Y
Sbjct: 118 RVVP----------------------LRDGQELIVTCVARKGIGKEHAKWNPTAGVGFEY 155
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
+P ++ + + W +S T++ DDE+ +
Sbjct: 156 DP-----DNAHRHTTYPIPREWPKSEYTEL--------------------DDELDQAP-- 188
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR---LSEDT 302
V + + F FTVES G++K +VL + VL++KL + L+ED+
Sbjct: 189 ------VNLLEEPKKFWFTVESCGSLKPENIVLMGLNVLRRKLTDLHSHMLNEDS 237
>gi|70943148|ref|XP_741656.1| DNA-directed RNA polymerase I [Plasmodium chabaudi chabaudi]
gi|56520171|emb|CAH77688.1| DNA-directed RNA polymerase I, putative [Plasmodium chabaudi
chabaudi]
Length = 297
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 14/219 (6%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI + +++ E+++ + S+ANALRR+MI+EVPTIAI+ V I N+ V+ DE + HRL
Sbjct: 50 MKIIKNEENLLILEIKNLNVSIANALRRIMISEVPTIAIEKVNIFQNTGVIADEILCHRL 109
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSS 128
GLIP + + F +D + C FC F L KC+S + +++ +YS
Sbjct: 110 GLIPFKFNADL-INF-KDTYEKYNNLNC-FC---FKLHVKCNSINNNKIGNENYQCIYSK 163
Query: 129 DHSVVPVDFVDPAGYDSTDQQ---RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
D P++ +++ + I+I KL GQE+ L KGIGK HAKWSP T
Sbjct: 164 DLKWCPLNEEQKIKFENNPPKVVDDNILITKLGSGQEIELICFLEKGIGKTHAKWSPVCT 223
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
+ P N D+ E + EK+ V P KVFDI+
Sbjct: 224 AVYKMFPS--FNFDVHEKFTNNEKKDLVNICPKKVFDIE 260
>gi|449017050|dbj|BAM80452.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 383
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 154/363 (42%), Gaps = 93/363 (25%)
Query: 11 KVKIREL--KDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
+V+IR+ + D FE+ DA NALRRV++AEVPT+AI+ V + NS+V+NDEF+A
Sbjct: 22 RVRIRKTLHRIDEVSFEVSGVDAPFLNALRRVLLAEVPTMAIEYVTVNENSTVMNDEFLA 81
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRA-----KCHSDQTLD---- 119
HRLGL+P+ ++ F R+ D + Q C F LR K H + L
Sbjct: 82 HRLGLVPVLAD-PRRFEFRRESD--EPSAQNTIC---FRLRVPPVNRKAHPEWNLSDGAV 135
Query: 120 ------VTSKDLYSSD------------HSVVPVDFVDP--------------------- 140
V S +YS D + + P
Sbjct: 136 FAGDDAVPSIPVYSDDIIWEQLQTRVGESCLSSTEGASPHRSSSDAQQQAEATDGLASAA 195
Query: 141 ---AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
A + QRGI++ K+ RGQ L +R A KG+G DHAKWSP AT + P +H+
Sbjct: 196 DSTAAVEPVQVQRGILLTKMLRGQRLDIRMEAVKGLGHDHAKWSPVATAYYKMVPRVHLK 255
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL- 256
+L L+ ++ + VFDI+ + G + V D T E ++ E KP L
Sbjct: 256 GELKGELA----ETIRGACAVHVFDIEESAGTLKVEDESRCTLCGECVRILE--DKPQLL 309
Query: 257 ---------------------------VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
V + + D F+F +ES G +A L A+ +
Sbjct: 310 DSERPDNYSKFMQPMETDLRKVYENDFVSVCQQTDRFVFFIESVGQYRADVLFGEALAIF 369
Query: 290 KQK 292
K
Sbjct: 370 HSK 372
>gi|298708063|emb|CBJ30416.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 361
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 152/310 (49%), Gaps = 33/310 (10%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+L DAS+ANALRR+++AEV T+AI+ V + +NSS+++DE +AHRLGLIP+ + M
Sbjct: 60 FDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRM- 118
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD-------------------QTLDVTSKD 124
F + + + D EF + F L K +D +T++V S
Sbjct: 119 FEFVGE-EGGEQDEPTEFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGA 177
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
+ H F G I+I KLR GQE+ RKGIGKDHAK+SP A
Sbjct: 178 MEWCPHGDQVERFEGEGGLRPVHDD--ILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVA 235
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG---QVYVVDAEAYTYD 241
T ++ P + L E + +E + V P VFDI+ G + V T
Sbjct: 236 TASYRLLPVV----TLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMC 291
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 301
E I++ K L + D FIF +ES G + +L+ ++I+VL+QK D++ +
Sbjct: 292 RECIREPGWSDKVSLSRV---ADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVE 348
Query: 302 TVEADDQFGE 311
E+ F E
Sbjct: 349 AFESGVDFDE 358
>gi|84000223|ref|NP_001033213.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos taurus]
gi|122143987|sp|Q32L22.1|RPAC1_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1
gi|81673907|gb|AAI09804.1| Polymerase (RNA) I polypeptide C, 30kDa [Bos taurus]
gi|296474425|tpg|DAA16540.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC1 [Bos
taurus]
Length = 346
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 163/321 (50%), Gaps = 40/321 (12%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D +G E +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLR 166
SD + +Y+ + VP+ F + A D I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDD---ILIAQLRPGQEIDLL 211
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++
Sbjct: 212 MHCVKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEI 267
Query: 227 TGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
G+ V + T+ EV + E + K +V + D FIF+VESTG + LV
Sbjct: 268 QGKKVARVANPRLDTFSREVFRN-EKLKK--VVRLARVRDHFIFSVESTGVLPPDVLVSE 324
Query: 285 AIEVLKQK-------LDAVRL 298
AI+VL K LDAV++
Sbjct: 325 AIKVLMGKCQRFLDELDAVQM 345
>gi|240104023|ref|YP_002960332.1| DNA-directed RNA polymerase subunit D [Thermococcus gammatolerans
EJ3]
gi|239911577|gb|ACS34468.1| DNA-directed RNA polymerase subunit D (rpoD) [Thermococcus
gammatolerans EJ3]
Length = 260
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/296 (35%), Positives = 141/296 (47%), Gaps = 60/296 (20%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK +I E ++D KF LR D ANALRR ++AEVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RL +IPLT+ RFS D D +V L+A+ V S DL S D
Sbjct: 63 RLAMIPLTTP---VERFSLDALELDD------YTVTLSLQAEGPG----MVYSGDLKSDD 109
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V P + I IVKL GQ+L A A+ G GKDHAKW P V +
Sbjct: 110 EGVKPAN-------------PNIPIVKLAEGQKLTFNAYAKLGRGKDHAKWQP-GFVYYK 155
Query: 190 YEPEIHIN------EDLME-----SLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
Y EIH++ E+L E L +EEK+ + K F + P + Y E
Sbjct: 156 YLTEIHVSKEVPDWEELKELAERRGLPVEEKKDEIIIKTIKAFYL-PRKFEAY----EGD 210
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+E+I PG +F+FTVE+ G + ++V A+++L +K D
Sbjct: 211 KIREEII--------PG---------AFVFTVETNGELPVEEIVSIALKILMRKSD 249
>gi|452836262|gb|EME38206.1| hypothetical protein DOTSEDRAFT_57363 [Dothistroma septosporum
NZE10]
Length = 393
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 157/324 (48%), Gaps = 58/324 (17%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-- 81
F L D+S+ANA RR+++AE+PT++I+ V N+S++ DE +AHRLGLIPLT R
Sbjct: 68 FSLVGVDSSIANAYRRILLAELPTLSIEDVYFFDNTSIIQDEVLAHRLGLIPLTGSRKGL 127
Query: 82 --------------MSMRFSRDCDACDG------DGQCEFCSVEFHLRAKCHSDQTLD-- 119
+ R D D +G D +F +V L+ +C +T+D
Sbjct: 128 REMRWFKKPPPKDDFAARAQWDADRAEGRVETDNDAPNDFNTVVLSLQVECRW-KTVDED 186
Query: 120 ------------VTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG----------IIIVKL 157
K+ Y++ + +P G T G I+I KL
Sbjct: 187 GVDGRQLAKDGETDPKEKYANSNVYAHQIQFEPQGDRQTGWFSGEEIIRPVNPDILIAKL 246
Query: 158 RRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSP 217
R GQ + +R A KGIG DHAK+SP AT ++ P+I I + ++ ++ +++ P
Sbjct: 247 RPGQRINVRMHAIKGIGADHAKFSPVATASYRLLPDIKITQPIVG----KDAKTFQHCFP 302
Query: 218 TKVFDI--DPNTGQVYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVEST 273
V + DP +G+ V + + T EV++ E GK L I D FIF+VES
Sbjct: 303 RGVIKLEDDPESGEKKAVVDDPFKDTVSREVLRHDEFKGKVKLGRI---RDHFIFSVESA 359
Query: 274 GAIKASQLVLNAIEVLKQKLDAVR 297
G ++ +L ++++ +LK+K + +
Sbjct: 360 GQFESDELFIDSVRLLKKKANTFK 383
>gi|393909614|gb|EFO27840.2| hypothetical protein LOAG_00653 [Loa loa]
Length = 684
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 163/305 (53%), Gaps = 31/305 (10%)
Query: 14 IRELKDDYA-KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
I E +D A +F+L +A +ANA+RR+ IAE+PT+AI+ V + N+S++ DE ++HRLG
Sbjct: 379 INESEDGMALEFDLVGVEAPIANAIRRIFIAELPTMAIEKVYLYQNTSIIPDEVLSHRLG 438
Query: 73 LIPLTSE-RAMSMRFSR---------DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
L+P+ ++ R M ++ DC+ + G E ++ F ++ C + T+
Sbjct: 439 LLPIKADPRLFKMPLAQVVGIDESGVDCNE-EPAGDPER-NLIFEIKVTCSRNSNALKTA 496
Query: 123 KD---------LYSSDHSVVPV-DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKG 172
+ +YS+ +P+ D Y I++ +LR GQE+ R KG
Sbjct: 497 TNPKEIYENAFVYSNAFKWIPIGDQSSSLPYPPAMVHDDILVAQLRPGQEIEARCHCLKG 556
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
+G+DHAK+SP AT ++ P+I + + + K S+ E V +ID + G V
Sbjct: 557 LGRDHAKFSPVATASYRLLPQIVLKRKFSGADAQRIKSSFSEG----VIEIDAD-GVAVV 611
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
DA T +++ + +E+ +D FIF+VESTGA+++++LV+ A +V+++K
Sbjct: 612 RDARCDTCSRNILRHEDLAEH---IELSRIKDHFIFSVESTGALRSAELVVEACKVMEEK 668
Query: 293 LDAVR 297
A+R
Sbjct: 669 CRALR 673
>gi|444321150|ref|XP_004181231.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
gi|387514275|emb|CCH61712.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 148/305 (48%), Gaps = 28/305 (9%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI L + A F+L + D S+ANA RR+M+AEVP +A + V N+SV+ DE +AHR+
Sbjct: 42 IKISNLDERDATFDLINIDTSIANAFRRIMMAEVPAVAAEHVYFLNNTSVIQDEVLAHRI 101
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL--DVT-SKDLYSS 128
GL+PL + M D + + + ++ L KC + D T K LY++
Sbjct: 102 GLVPLKVDPDMLTWV--DQTLPEEERFTDENTIVLSLNVKCTKNDKAPKDCTDPKILYNN 159
Query: 129 DHSVVPVDFVDPAGYD----------STDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
H +P G TD I++ KLR GQE+ LRA GIG DHA
Sbjct: 160 AHVYARDLKFEPQGKQVETFANCPVVPTDPD--ILLAKLRPGQEISLRAHCILGIGSDHA 217
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
K+SP AT ++ P I+I E + E+ Q + D G+ YV DA
Sbjct: 218 KFSPVATASYRLLPHINITEPI-RGKDAEKFQKCFTPGVIGIKD-----GEAYVKDARMD 271
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRL 298
T EV + E K V++ D F+F VESTGA+ ++ ++ +LK K A L
Sbjct: 272 TVSREVFRHQEFADK---VKLGRVRDHFVFNVESTGAMPPEEIFFKSVRILKNK--AQYL 326
Query: 299 SEDTV 303
E T+
Sbjct: 327 KECTI 331
>gi|241730129|ref|XP_002412264.1| transferase, putative [Ixodes scapularis]
gi|215505503|gb|EEC14997.1| transferase, putative [Ixodes scapularis]
gi|442748497|gb|JAA66408.1| Putative rna polymerase i and iii subunit [Ixodes ricinus]
Length = 344
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 156/323 (48%), Gaps = 48/323 (14%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D ++R ++ I L D +F++ + ++ANA+RR+++AEVPT+A D V + N+S+
Sbjct: 38 DLKKFERNFQIGIVSLDDMTMEFDMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTSI 97
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLD 119
+ DE +AHR+GL+P + M +D + D +VEF L+ KC + D
Sbjct: 98 VQDEVLAHRIGLVPFNIDPRMFDYREKDSEGSPED------TVEFELKVKCTRNPQAPKD 151
Query: 120 VTSKDLYSSDHSVVPVDFV-DPAG--------------YDSTDQQRGIIIVKLRRGQELR 164
T+ D DH V P G YD II+ KLR GQE+
Sbjct: 152 ATTPDELYKDHVVYTRHLTWTPIGSQAEIFGNKPPKPVYDD------IILAKLRPGQEID 205
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L+ KG G+DHAK+SP AT ++ PEI + ++ + + E Q ++ + D
Sbjct: 206 LKLHCMKGTGQDHAKFSPVATASYRLLPEIVLLREVRDEQA-ERLQGCFAKGVIELDETD 264
Query: 225 PNTGQVYVVDAEA-------YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 277
V +A A + YDD +K A VE+ +D FIF+VESTGA
Sbjct: 265 DGHKVARVANARADTCSRNVFQYDD--LKDA--------VELTRVKDHFIFSVESTGAYP 314
Query: 278 ASQLVLNAIEVLKQKLDAVRLSE 300
LV AI+VL K A LSE
Sbjct: 315 PDLLVTEAIKVLMAKCQAF-LSE 336
>gi|312137109|ref|YP_004004446.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
gi|311224828|gb|ADP77684.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
Length = 264
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 133/274 (48%), Gaps = 30/274 (10%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
KF + D S NALRR + EVP +AI+ + I N+S + DE +AHRLGLIPL S +
Sbjct: 14 KFTIDGVDTSFVNALRRASMTEVPKLAIEYIRIVTNTSRMYDEMLAHRLGLIPLRSNEKI 73
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAG 142
+ CD D C CSV F L+ + V S DL SD + PV
Sbjct: 74 VGNLLMP-EECDCDKYCAKCSVSFTLKKQ----GPCVVYSGDLVPSDPEIKPV------- 121
Query: 143 YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLME 202
I I+KL +++ L AIA+ G+GK HAKW P + Y P+I I +
Sbjct: 122 ------YENIPIIKLEEDEKIELEAIAQLGLGKKHAKWRPTTACGYKYYPKIIIKD---- 171
Query: 203 SLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAK 262
+ + Q+ +E P V + +T ++ ++A + E I + E+ + +
Sbjct: 172 --TCDNCQACIEECPKDVLKANKDTIKIENIEACSLCRACERICENES------ISVQYI 223
Query: 263 EDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
++ FIF +E+ G++ +++ A + + +K D +
Sbjct: 224 DNKFIFKMETDGSMPPREILNKACDSIIKKADEI 257
>gi|298674771|ref|YP_003726521.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287759|gb|ADI73725.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 265
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 134/282 (47%), Gaps = 31/282 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV + EL + A+F L +T + AN++RR M+A+VPT AID + I N+SVL DE + R
Sbjct: 4 KVDMLELSERSARFVLSNTTPAFANSIRRAMLADVPTFAIDDLNIYNNTSVLYDEQLGLR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPL +E +C +G C C V L A + V S DL SSD
Sbjct: 64 LALIPLATENIDDYTTQDECTCEEG---CPSCEVSITLSA----EGPKMVYSGDLISSDP 116
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
+ P D I I++L+ Q + L A+A KG+GKD+AKW +
Sbjct: 117 GIQPAD-------------TNIPIIELKEDQRVVLEALAHKGLGKDNAKWQAGVACGYKN 163
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P I +N + ++ V P + +D +V A+ D + K E
Sbjct: 164 LPLIRVN-------NCDKCGLCVSECPKGIIYLDEEGAKV----ADENLMDCILCKLCEE 212
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ + + E SF+FTVES G+ + QL++NA +K K
Sbjct: 213 ACEIDAISVKEDESSFLFTVESDGSYSSQQLIINAGNTIKAK 254
>gi|341897190|gb|EGT53125.1| hypothetical protein CAEBREN_31421 [Caenorhabditis brenneri]
Length = 365
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 148/298 (49%), Gaps = 33/298 (11%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL-TSERAM 82
F++ +A +ANALRR+++AEVPT+A++ + + N+SV+ DE + HRLGL+PL RA
Sbjct: 69 FDIIRIEAPIANALRRILLAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRAF 128
Query: 83 SMRFSR---------DCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-------- 124
+ DCD +GD F + C ++ + D
Sbjct: 129 QFPTEKVVGINEKGVDCDEEPEGDPTRNLI---FKINVACTKNRNAANGTTDPKQLYHHS 185
Query: 125 -LYSSDHSVVPVDFVDPAGYDSTDQQR----GIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+YS +P+ GY ++ + I++ KLR GQE+ A KGIG+DHAK
Sbjct: 186 SVYSRAFEWIPIGN-QKEGYTKNNKPKMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAK 244
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP AT ++ P I +N ++ S E+ V S + N V DA A T
Sbjct: 245 FSPVATASYRLLPTIRLNAEI--SGEAAERLQSVFSEGVIGIEKKGNKKIAVVKDARADT 302
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
V + + +V + + FIF+VESTGA+KAS+LV+ A +V++ K ++R
Sbjct: 303 CSRNVFRHEDLA---QVVHLGKNKQHFIFSVESTGALKASELVVEACKVMESKCRSLR 357
>gi|428166654|gb|EKX35626.1| hypothetical protein GUITHDRAFT_90183 [Guillardia theta CCMP2712]
Length = 375
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 146/300 (48%), Gaps = 25/300 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+KI E+K+D F+L + ++AN++RRV++AEVPT+AI+ V + N+ VL DE +A R
Sbjct: 52 KMKILEIKEDQMSFDLSGIEVALANSIRRVLLAEVPTMAIEKVFVYNNTGVLRDELVAQR 111
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF-------HLRAKCHSDQTLDVTSK 123
LGLIP+ ++ + S + D + E + H + +
Sbjct: 112 LGLIPIMADPEIFSWPSAEAKGADETTNLDKLEKEVIKFKLKVKCKKPPHDSADKEPING 171
Query: 124 DLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIARKGIG---KDHA 178
++SS +P+ S I+I +LR GQEL + KG + HA
Sbjct: 172 KVFSSQLEWIPIGKQAETFKSSPPAPVHDDILITRLRPGQELDMEMHCHKGNNCGDRGHA 231
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID-----PNTGQVYVV 233
KWSP AT + P I DL+E ++ + S V+ P FDI+ P + V
Sbjct: 232 KWSPVATAWYRLLPRI----DLVEEVTGDLADSLVKKCPMDCFDIEEAHGVPGGRRAIVS 287
Query: 234 D-AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
D T E I++ E V + K+D FIFT+ESTG IK +QL A++VLK K
Sbjct: 288 DKVRDCTLCRECIREPELAKA---VRLARKKDHFIFTIESTGIIKPAQLFKQALQVLKGK 344
>gi|224047705|ref|XP_002195566.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Taeniopygia guttata]
Length = 346
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 152/295 (51%), Gaps = 32/295 (10%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
IRE ++D +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHRLGL
Sbjct: 54 IRE-EEDALEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGL 112
Query: 74 IPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-------- 124
IP+ ++ R R D + + D +++F L+ KC + S D
Sbjct: 113 IPIRADPRLFEYRNQGDQEGTEID------TLQFQLKIKCKRNPQAAKESSDPDELYFNH 166
Query: 125 -LYSSDHSVVPV----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+YS + VP+ D A + I+I LR GQE+ + KGIGKDHAK
Sbjct: 167 KVYSKHMTWVPLGNQTDLFPDADFRPVHDD--ILIALLRPGQEIDVLMHCVKGIGKDHAK 224
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAEA 237
+SP AT ++ P+I L++ + E ++ + V +I G+ V +A
Sbjct: 225 FSPVATASYRLLPDI----TLLQPVEDEAAETLQKCFSPGVIEIQNINGKKVARVANARL 280
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
T+ EV + G LV + + +IF+VESTG + LV AI++L K
Sbjct: 281 DTFSREVFRHE---GLKNLVRLARVRNHYIFSVESTGILPPDVLVSEAIKILMGK 332
>gi|340924182|gb|EGS19085.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide-like
protein [Chaetomium thermophilum var. thermophilum DSM
1495]
Length = 374
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 154/332 (46%), Gaps = 55/332 (16%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++R +V+ + A F L AS+ANA RR+MIA++PT+AI+ V I N+SV
Sbjct: 44 DLEAFRREFRVEFHQNDPYEASFSLIGCHASIANAFRRIMIADIPTLAIETVFINNNTSV 103
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQC-----EFCSVEFHLRAKC---- 112
+ DE +AHRLGLIP + +F + + Q +F +V L KC
Sbjct: 104 IQDEVLAHRLGLIPFKGGKEGLHKFLKWWKKPADESQINNSYYDFNTVSLRLEVKCEENP 163
Query: 113 -----HSDQTLDVTSKDLYSSDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKL 157
+D T +Y+ D PV + + P D I+I KL
Sbjct: 164 DAAPGETDPTKLYKHAHVYARDIEFCPVGRQHKYFSGENAIRPVNPD-------ILIAKL 216
Query: 158 RRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSP 217
R GQE+ L KG+G DHAK+SP AT ++ P I D++E + ++ + + + P
Sbjct: 217 RPGQEISLSMHMHKGVGSDHAKFSPVATASYRLLPVI----DIIEPILGKDAEKFQKCFP 272
Query: 218 TKVFDIDPNT-------GQVY----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIY 260
V ++ T G Y VVD T E ++ E GK V++
Sbjct: 273 KGVIGLERVTKEEASRKGSGYEGHEGELKAVVVDPMRDTVSRECLRHPEFKGK---VKLG 329
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ D FIF VESTG ++ + L A+ LK++
Sbjct: 330 RRRDHFIFLVESTGQWESDAIFLEAVAHLKKR 361
>gi|119226251|ref|NP_033111.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Mus musculus]
gi|341942146|sp|P52432.3|RPAC1_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPC40
gi|74205031|dbj|BAE20986.1| unnamed protein product [Mus musculus]
gi|74226711|dbj|BAE27005.1| unnamed protein product [Mus musculus]
gi|148691536|gb|EDL23483.1| RNA polymerase 1-1, isoform CRA_a [Mus musculus]
Length = 346
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 162/320 (50%), Gaps = 29/320 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + ++ +D +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQNRFEKNFRVDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R + + + D +++F L+ +C +
Sbjct: 101 VQDEILAHRLGLIPILADPRLFEYRNQGEEEGTEID------TLQFRLQVRCTRNPNAAK 154
Query: 121 TSKD---------LYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
S D +Y+ + VP+ V P G I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD-DILIAQLRPGQEIDLMMH 213
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ P I L+E + E + + V +++ G
Sbjct: 214 CVKGIGKDHAKFSPVATASYRLLPAI----TLLEPVEGEAAEELSQCFSPGVIEVEEVQG 269
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V +A T+ E+ + E + K V + D +IF+VESTG + LV AI
Sbjct: 270 KKVARVANARLDTFSREIFRH-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAI 326
Query: 287 EVLKQKLDAVRLSEDTVEAD 306
++L K D VE D
Sbjct: 327 KILMGKCRRFLDELDAVEMD 346
>gi|195437356|ref|XP_002066606.1| GK24584 [Drosophila willistoni]
gi|194162691|gb|EDW77592.1| GK24584 [Drosophila willistoni]
Length = 332
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 152/295 (51%), Gaps = 27/295 (9%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV I ++ +F+L ++ANA RR+M++EVP++AI+ V I N+S++ DE +AHR
Sbjct: 41 KVTIVRNDEEGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHR 100
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSS 128
+GL+PL ++ + F+ + +G E ++E+ L+ KC D + D ++ D
Sbjct: 101 MGLLPLKADPRL---FTYRTEESPENG-TEQDTLEYELKVKCTRRKDASKDQSTFDEIYK 156
Query: 129 DHSVVPVDF----VDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAK 179
+H V G T+ G I+I +LR G E+ LR IA KG+GKDHAK
Sbjct: 157 NHKVFSGHLKWLPKGKQGQIYTESSVGCIHEDILIAQLRPGHEMDLRLIAVKGLGKDHAK 216
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESS--PTKVFDIDPNTGQVYVVDAEA 237
+SP AT + P I +N + + K +++ S V ID N YV DA
Sbjct: 217 FSPVATAYYRLLPLIKLNRE------VSGKDAYLLQSCFSPGVIGIDENEN-AYVKDARY 269
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ V + + L + D +IFTVES GA+K + + A++VLK+K
Sbjct: 270 DSGSRNVYRYSHLADAVTLARV---RDHYIFTVESVGALKPEVIFIEAVKVLKKK 321
>gi|395324899|gb|EJF57331.1| insert subdomain of RNA polymerase alpha subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 370
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 160/327 (48%), Gaps = 30/327 (9%)
Query: 4 ASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
A +++ KV ++ L +F+L DA++ANA RR++IAEVPTIAI+ V + N+SV++
Sbjct: 49 AKFKQNLKVSVKRLSQRSVEFDLVGVDAAIANAFRRILIAEVPTIAIEDVFVFNNTSVIH 108
Query: 64 DEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
DE +A R+GLIPL + R R G + ++ F L C + S
Sbjct: 109 DEILAQRIGLIPLNVDPRLFDFR-------PPGGIPMDRNTLVFKLNVTCERAKK---GS 158
Query: 123 KDLYSSDHSVVPVDFV-DPAGYDST--------DQQRGIIIVKLRRGQELRLRAIARKGI 173
Y +++ V D V +P G +T I++ KLR GQ + + A KG+
Sbjct: 159 SSPYINEY-VKSGDLVWEPQGEQATVFASRPPAATNPDIVLAKLRPGQVIEMELHAIKGV 217
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
GK+HAKWSP AT T+ P + +N + + E Q + + V ++ G+V +
Sbjct: 218 GKEHAKWSPVATATYRLHPLVLLNPS--KPVPPEHAQKFAKCFSPGVVEVS-AAGEVAIN 274
Query: 234 D--AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQ 291
+ T E ++ E G VE+ D FIF VES G L+ AI+V++
Sbjct: 275 ERYLRTETMSREALRHKEFE---GCVELKRIRDWFIFQVESEGPYTPELLLPEAIKVMRG 331
Query: 292 KLDAVRLSEDTVEADDQ-FGELGAHMR 317
K+ ++R + + + D Q G G R
Sbjct: 332 KILSIRAAAEALLEDSQDLGSGGGSGR 358
>gi|120538451|gb|AAI30019.1| Polr1c protein [Mus musculus]
Length = 347
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 162/320 (50%), Gaps = 29/320 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + ++ +D +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 42 DQNRFEKNFRVDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 101
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R + + + D +++F L+ +C +
Sbjct: 102 VQDEILAHRLGLIPILADPRLFEYRNQGEEEGTEID------TLQFRLQVRCTRNPNAAK 155
Query: 121 TSKD---------LYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
S D +Y+ + VP+ V P G I+I +LR GQE+ L
Sbjct: 156 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD-DILIAQLRPGQEIDLMMH 214
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ P I L+E + E + + V +++ G
Sbjct: 215 CVKGIGKDHAKFSPVATASYRLLPAI----TLLEPVEGEAAEELSQCFSPGVIEVEEVQG 270
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V +A T+ E+ + E + K V + D +IF+VESTG + LV AI
Sbjct: 271 KKVARVANARLDTFSREIFRH-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAI 327
Query: 287 EVLKQKLDAVRLSEDTVEAD 306
++L K D VE D
Sbjct: 328 KILMGKCRRFLDELDAVEMD 347
>gi|384248203|gb|EIE21688.1| insert subdomain of RNA polymerase alpha subunit [Coccomyxa
subellipsoidea C-169]
Length = 372
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 157/310 (50%), Gaps = 32/310 (10%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+QR KV ++ ++ + +F++ D ++ANALRR++I+E+PT+AI+ V I N+S++ E
Sbjct: 72 FQRDFKVAMKWVRGNDMEFDVIGIDPAIANALRRILISEIPTVAIEHVYIINNTSIIACE 131
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD- 124
++HRLGL+P+ + + D + E S+ F L +C + + V K
Sbjct: 132 VLSHRLGLVPIQVDPNLLQ------DKSGEETATETNSIVFKLDVRCRREGDMMVNEKVK 185
Query: 125 ----LYSSDHSVVPVD-----------FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
+ + S +P + + PAG I++ K+R GQE+ L A
Sbjct: 186 SGQLRWLPNGSEMPEETNCRYASSQEALLGPAGARLVHDD--ILLAKMRPGQEIVLEAHC 243
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
+G G +HAKWSP AT + +PE+ I + ++ K + ++ +F ++ +
Sbjct: 244 VRGTGAEHAKWSPVATAWYRLQPEVAILQPVVGP-----KADALAAACPGLFTVEGSGAS 298
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGL---VEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
V +A ++ ++ K G+ VE+ ++D FIFT+ESTG + QL L A+
Sbjct: 299 RRAVAGDARQHEKQLEKVRRMSGEEEWSEHVELRKRKDHFIFTIESTGILAPDQLFLRAL 358
Query: 287 EVLKQKLDAV 296
+VL K D +
Sbjct: 359 DVLAAKCDKL 368
>gi|296811216|ref|XP_002845946.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
gi|238843334|gb|EEQ32996.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
Length = 380
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 156/324 (48%), Gaps = 35/324 (10%)
Query: 12 VKIRELKDDY--AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
+KI K+D A F L DA++ANA RR++IAE+PT+AI+ V I+ N+SV+ DE +AH
Sbjct: 52 LKIEFHKNDPLEASFSLIGVDAAIANAFRRILIAEIPTLAIEYVYIQNNTSVIQDEVLAH 111
Query: 70 RLGLIPLTS--ERAMSMRF---SRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
RLGLIPL E +R+ ++ D G + ++ L +C + + +D
Sbjct: 112 RLGLIPLKGSLEGINWLRWFKVPKEGDPDSGSTHEDSNTIVLRLVKECKLNPNAHPSEED 171
Query: 125 ---LYSSDHSVVPVDFVDPAGY-------DSTDQQRG--IIIVKLRRGQELRLRAIARKG 172
LY++ H +P G D Q I++ KLR GQ++ + KG
Sbjct: 172 PTVLYNNAHIYAKDLIFEPQGRQEKYFHGDGVIQSANPDILLAKLRPGQKIDIEMHCIKG 231
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMES-------------LSLEEKQSWVESSPTK 219
IG DHAK+SP AT ++ P+I I ++ + +E + + P
Sbjct: 232 IGADHAKYSPVATASYRLLPDIQILRPILGKDAIKFAGCFPRGVIGIEHVTAAESAQPGS 291
Query: 220 VFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKAS 279
++ + VVD T E ++ E GK V++ D FIF +ESTG +
Sbjct: 292 GYEGKEGEKKAVVVDPFKDTVSRECLRHDEFKGK---VKLGRVRDHFIFNIESTGQFNSD 348
Query: 280 QLVLNAIEVLKQKLDAVRLSEDTV 303
+ L +I+VLK K ++ + T+
Sbjct: 349 LMFLESIKVLKLKCQRLKRNVATL 372
>gi|270010836|gb|EFA07284.1| hypothetical protein TcasGA2_TC014519 [Tribolium castaneum]
Length = 335
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 158/309 (51%), Gaps = 40/309 (12%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
+RF V +R +++ +F+L +AN RR+M+++VPT+AI+ V I N+S++ DE
Sbjct: 41 KRFRVVIVRS-EENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHILNNTSIIQDEV 99
Query: 67 IAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLD-VTS 122
+AHRLGLIPL ++ R M+ + + D ++EF L+ KC + D + D + +
Sbjct: 100 LAHRLGLIPLKADPRLFEMKTDPTAEGTEQD------TLEFALKIKCTNNKDSSKDSLRA 153
Query: 123 KDLYSSDH------SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
+D+Y +++ VP+ D I+I K+R G EL L+ +A K G+D
Sbjct: 154 EDMYKNNNVYSKHIKWVPIGKQKERFSDVGPIHPDILIAKMRPGHELDLKLLAVKSNGRD 213
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAK+SP AT + P+I L+ + E + + V I G+ Y V A
Sbjct: 214 HAKFSPVATAFYRLLPDI----KLLREVEGEAAERLQKCFSPGVISIRHEKGRKYAVVAN 269
Query: 237 A---------YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
A + Y+D +K A AM K +D FIFTVES GA+ + + A++
Sbjct: 270 ARYDTGSRNVFRYED--LKDAVAMTK--------IQDHFIFTVESVGALPPDVIFMEAVK 319
Query: 288 VLKQKLDAV 296
+LK K A+
Sbjct: 320 ILKDKCLAL 328
>gi|341888283|gb|EGT44218.1| hypothetical protein CAEBREN_24695 [Caenorhabditis brenneri]
Length = 365
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 148/298 (49%), Gaps = 33/298 (11%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL-TSERAM 82
F++ +A +ANALRR+++AEVPT+A++ + + N+SV+ DE + HRLGL+PL RA
Sbjct: 69 FDIIRIEAPIANALRRILLAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRAF 128
Query: 83 SMRFSR---------DCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-------- 124
+ DCD +GD F + C ++ + D
Sbjct: 129 QFPTEKVVGINEKGVDCDEEPEGDPTRNLI---FKINVACTKNRNAANGTTDPKQLYHHS 185
Query: 125 -LYSSDHSVVPVDFVDPAGYDSTDQQR----GIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+YS +P+ GY ++ + I++ KLR GQE+ A KGIG+DHAK
Sbjct: 186 SVYSRAFEWIPIGN-QKEGYTKQNKPKMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAK 244
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP AT ++ P I +N ++ S E+ V S + N V DA A T
Sbjct: 245 FSPVATASYRLLPTIRLNAEI--SGEAAERLQSVFSEGVIGIEKKGNKKIAVVKDARADT 302
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
V + + +V + + FIF+VESTGA+KAS+LV+ A +V++ K ++R
Sbjct: 303 CSRNVFRHEDLA---QVVHLGKNKQHFIFSVESTGALKASELVVEACKVMESKCRSLR 357
>gi|242021511|ref|XP_002431188.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212516437|gb|EEB18450.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 347
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 152/289 (52%), Gaps = 24/289 (8%)
Query: 17 LKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 76
L D +F+L + ++ANA RR++++EVP++AI+ V + N++++ DE +AHRLGL+PL
Sbjct: 50 LNDTEMEFDLVGINCAVANAFRRILLSEVPSMAIEKVFVSNNTTLIKDEVLAHRLGLVPL 109
Query: 77 TSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS---KDLYSSDHSV 132
++ R R + + D ++EF L+ KC ++ S DLY +HSV
Sbjct: 110 KADSRLFEYRSENSNEPNEQD------TLEFELKIKCSVNKEGHKNSYQIDDLY-INHSV 162
Query: 133 VP--VDFVDPAGYDSTDQQRG-------IIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+ +V +T ++ I++ KLR GQEL L+ A KG+GKDH K+SP
Sbjct: 163 YSKHLKWVPIGSQGTTYDEKNIGPVLPDILLNKLRPGQELDLKLHAVKGLGKDHTKFSPV 222
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
AT + PEI + + + + E Q+ ++ + D + YV A Y
Sbjct: 223 ATAFYRMLPEITMVKKVTGE-AAERLQNCFSPGVIEIRENDEGEKEAYVASAR-YDSGSR 280
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
++ + E + VE+ + FIF +ES GAI ++L + A++VLK K
Sbjct: 281 IVFRQEDL--KDCVEMKRVRNHFIFNIESVGAIPPNELFVEAVKVLKNK 327
>gi|426250337|ref|XP_004018893.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ovis aries]
Length = 346
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 163/321 (50%), Gaps = 40/321 (12%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D +G E +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLR 166
SD + +Y+ + VP+ F + A D I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDD---ILIAQLRPGQEIDLL 211
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++
Sbjct: 212 MHCVKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEI 267
Query: 227 TGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
G+ V + T+ EV + E + K +V + D +IF+VESTG + LV
Sbjct: 268 QGKKVARVANPRLDTFSREVFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSE 324
Query: 285 AIEVLKQK-------LDAVRL 298
AI+VL K LDAV++
Sbjct: 325 AIKVLMGKCQRFLDELDAVQM 345
>gi|148691537|gb|EDL23484.1| RNA polymerase 1-1, isoform CRA_b [Mus musculus]
Length = 323
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 162/320 (50%), Gaps = 29/320 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + ++ +D +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 18 DQNRFEKNFRVDVVQMDEDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 77
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R + + + D +++F L+ +C +
Sbjct: 78 VQDEILAHRLGLIPILADPRLFEYRNQGEEEGTEID------TLQFRLQVRCTRNPNAAK 131
Query: 121 TSKD---------LYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
S D +Y+ + VP+ V P G I+I +LR GQE+ L
Sbjct: 132 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD-DILIAQLRPGQEIDLMMH 190
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ P I L+E + E + + V +++ G
Sbjct: 191 CVKGIGKDHAKFSPVATASYRLLPAI----TLLEPVEGEAAEELSQCFSPGVIEVEEVQG 246
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V +A T+ E+ + E + K V + D +IF+VESTG + LV AI
Sbjct: 247 KKVARVANARLDTFSREIFRH-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAI 303
Query: 287 EVLKQKLDAVRLSEDTVEAD 306
++L K D VE D
Sbjct: 304 KILMGKCRRFLDELDAVEMD 323
>gi|449541898|gb|EMD32879.1| hypothetical protein CERSUDRAFT_160889 [Ceriporiopsis subvermispora
B]
Length = 364
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 151/315 (47%), Gaps = 40/315 (12%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D A +++ ++ ++ L +F+L DAS+ANA RR++IAEVPT+AI+ V + N+SV
Sbjct: 46 DLAKFKQNLQLSVKRLSQRSIEFDLVGVDASIANAFRRILIAEVPTMAIEHVYVWNNTSV 105
Query: 62 LNDEFIAHRLGLIPL-TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +A RLGLIPL R R D + ++ F L C +
Sbjct: 106 IQDEVLAQRLGLIPLDVDPRMFEFR-------TQTDTPTDRNTLVFQLNVTCERMKNAPR 158
Query: 121 TSKDLY------SSDHSVVP-----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIA 169
S + S D VP V F D + + I++ KL GQE+ + A
Sbjct: 159 GSTSQHKHEYVRSEDLEWVPQGEQEVVFADKPPAPTNKE---IVLAKLAPGQEINVELHA 215
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KG+GK+HAKW+P AT ++ P + +N L +K + K F + G
Sbjct: 216 IKGVGKEHAKWNPVATASYRLHPLVLLNPSKPIPPHLADKFA-------KCF----SPGV 264
Query: 230 VYVVDAEAYTYDDEVIKKA----EAMGKP---GLVEIYAKEDSFIFTVESTGAIKASQLV 282
V V + D+ ++K E + P G VE+ D FIFT+ES K +L
Sbjct: 265 VRVESGGKVSIDERNLRKESMSREVLRHPEFEGCVELKRIRDWFIFTIESESHYKPEELF 324
Query: 283 LNAIEVLKQKLDAVR 297
L +++V++ K+ +VR
Sbjct: 325 LESVKVMRAKIASVR 339
>gi|15219820|ref|NP_176282.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|30696474|ref|NP_849833.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|12323800|gb|AAG51868.1|AC079675_3 RNA polymerase subunit; 10595-12672 [Arabidopsis thaliana]
gi|110741863|dbj|BAE98873.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|332195618|gb|AEE33739.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195619|gb|AEE33740.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 154/319 (48%), Gaps = 39/319 (12%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G Y F KV + L +F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVT 121
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 180
Query: 122 SKDLY-----------SSDHSVVPVDFV----------DPAGYDSTDQQRGIIIVKLRRG 160
+ DL S + + P + + A T I+I KL G
Sbjct: 181 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 240
Query: 161 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKV 220
QE+ L A A KGIGK HAKWSP T + PE+ + ++ + L+ + V P V
Sbjct: 241 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 296
Query: 221 FDI-DPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 277
FDI D G+ V T E ++ + + L + ++ FIF +ESTG++
Sbjct: 297 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSV---KNHFIFNIESTGSLP 353
Query: 278 ASQLVLNAIEVLKQKLDAV 296
L A+++L+ K +A+
Sbjct: 354 PEVLFTEAVKILEAKCEAI 372
>gi|289742757|gb|ADD20126.1| RNA polymerase I and III subunit rPA40/rPC40 [Glossina morsitans
morsitans]
Length = 330
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 162/303 (53%), Gaps = 25/303 (8%)
Query: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
D S+++ K+ + + + +F++ +ANA RR+M++EVP++AI+ V I N+S
Sbjct: 31 FDIESFKKKFKIIVVRYQGNELEFDMVGVHPGIANAFRRLMLSEVPSMAIEKVYIHNNTS 90
Query: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
++ DE +AHRLGLIPL ++ + F D + D E +++F L+ KC + +
Sbjct: 91 IIQDEVLAHRLGLIPLKADPRL---FEYRGD--ESDQGTEQDTLDFELKVKCSRRKDVKE 145
Query: 121 TSK-DLYSSDHSVVP--VDFVDPAG-----YDSTDQ---QRGIIIVKLRRGQELRLRAIA 169
+S D +H + + ++ P G Y +D I+I ++R G EL +R A
Sbjct: 146 SSNFDSIYKNHKIYSGQIKWL-PKGKQAQIYSESDVGPIDDDILITQMRPGHELDIRLAA 204
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT + PE+ + +D++ + ++ + SP V +D N +
Sbjct: 205 VKGIGKDHAKFSPVATAFYRLLPEVKLKKDVVGKDAFLLQKCF---SPG-VIGLDEND-R 259
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
YV +A T V + + +VE+ D +IFTVES GA+K + + A+++L
Sbjct: 260 AYVKNARYDTCSRNVYRYPQLA---DVVEMARIRDHYIFTVESLGALKPDVIFIEAVKLL 316
Query: 290 KQK 292
K K
Sbjct: 317 KSK 319
>gi|367019632|ref|XP_003659101.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
gi|347006368|gb|AEO53856.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
Length = 374
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 146/310 (47%), Gaps = 51/310 (16%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR+MIA++PT+AI+ V + N+SV+ DE +AHRLGLIP
Sbjct: 64 ASFSLIGIDASIANAFRRIMIADIPTLAIETVFVNNNTSVIQDEVLAHRLGLIPFKGGHK 123
Query: 82 MSMRFSRDCDACDGDGQC-----EFCSVEFHLRAKC---------HSDQTLDVTSKDLYS 127
+F + D + Q ++ +V L KC +D T +Y+
Sbjct: 124 GLHKFLKFWRRPDDESQVNNSYYDYNTVSLRLEVKCEHNENAAPGETDPTKLYKHAHVYA 183
Query: 128 SDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
D PV D + P D I+I KLR GQE+ L KG+G DH
Sbjct: 184 RDIEFCPVGRQTKYFSGDDAIAPVNPD-------ILIAKLRPGQEISLTMHMHKGVGSDH 236
Query: 178 AKWSPAATVTFMYEPEIHINEDLMES-------------LSLEEKQSWVESSPTKVFDID 224
AK+SP AT ++ P I I ++ + ++LE+ E + K +
Sbjct: 237 AKFSPVATASYRLMPVIKIERPILGADAEKFARCFPRGVIALEKVTK--EEAAQKGSGYE 294
Query: 225 PNTGQVYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
+ G++ V A+ T E ++ E GK V++ + D FI+ VESTG K+ +
Sbjct: 295 GHEGELKAVVADPMRDTVSRECLRHDEFKGK---VKLGRRRDHFIYLVESTGQWKSDFIF 351
Query: 283 LNAIEVLKQK 292
L A+ LK++
Sbjct: 352 LEAVAHLKKR 361
>gi|514322|gb|AAB00528.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|1586549|prf||2204246A RNA polymerase
Length = 375
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 154/319 (48%), Gaps = 39/319 (12%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G Y F KV + L +F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVT 121
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNNIVFKLHVKCPKNRPRLKVL 180
Query: 122 SKDLY-----------SSDHSVVPVDFV----------DPAGYDSTDQQRGIIIVKLRRG 160
+ DL S + + P + + A T I+I KL G
Sbjct: 181 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 240
Query: 161 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKV 220
QE+ L A A KGIGK HAKWSP T + PE+ + ++ + L+ + V P V
Sbjct: 241 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 296
Query: 221 FDI-DPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 277
FDI D G+ V T E ++ + + L + ++ FIF +ESTG++
Sbjct: 297 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSV---KNHFIFNIESTGSLP 353
Query: 278 ASQLVLNAIEVLKQKLDAV 296
L A+++L+ K +A+
Sbjct: 354 PEVLFTEAVKILEAKCEAI 372
>gi|224009616|ref|XP_002293766.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
gi|220970438|gb|EED88775.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
Length = 351
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 147/302 (48%), Gaps = 43/302 (14%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
FE+ D S ANALRR+MIAE+PT+A++ V + NSS+++DE ++HRLGL+PL + +
Sbjct: 59 FEVVGVDVSFANALRRIMIAEIPTMALEHVYMWNNSSLIHDEVLSHRLGLVPLNVDPRLF 118
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLR--AKCHSDQTLDVT---------SKDLYSSDHSV 132
+ D D + ++ F L HS T +K +Y+ D
Sbjct: 119 DEYGVDVDEVGEVAATDRNTIVFRLNEATSLHSSSNQQKTVIDSPHRPFTKHIYTRDLLW 178
Query: 133 VP-----VDF--------------VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
P +F + P D I++ KLR GQ + L A ARKG+
Sbjct: 179 APQGSQLTNFPLHSTGVGSGVGGGIRPISED-------ILLAKLRPGQVIELEAHARKGV 231
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
GKDHAK+SP AT ++ P I I + + + L+ EE +W E K+ D G V
Sbjct: 232 GKDHAKFSPVATASYRLMPHIEIVKPIYDELA-EELVNWFEPGVFKLVPADDEDGGHKVK 290
Query: 234 DAEAYTYDDEVIKKAEAMGKPGL---VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
+ Y + + M P L +++ + FIF+VES G ++ + +V A++VLK
Sbjct: 291 AELSNPYACTMSRN--YMRNPTLKESIKMSRVPNHFIFSVESVGMMEPAVIVSEALKVLK 348
Query: 291 QK 292
+K
Sbjct: 349 EK 350
>gi|212530122|ref|XP_002145218.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
gi|210074616|gb|EEA28703.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
Length = 373
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 79
A F L DAS+ANA RR++IAEVPT+AI+ V I N+SV+ DE +A RLGLIPL E
Sbjct: 64 ASFSLVGLDASVANAFRRILIAEVPTLAIEFVYILNNTSVIQDEVLASRLGLIPLKGSIE 123
Query: 80 RAMSMRFSRDCDACDGDGQ--CEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVVP 134
M++ + D +F +V +L +C ++ +D Y + H
Sbjct: 124 GLNWMQWFKKATEEDPSSSEPSDFNTVVLNLNIECTVNEKAPPGEEDPRIRYHNAHVYAS 183
Query: 135 VDFVDPAG----YDSTDQQ-----RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
DP G Y S + + I+I KLR GQ + L KGIG DHAK+SP AT
Sbjct: 184 DITFDPKGRQEHYFSGEGEIKPVNPDILIAKLRPGQVIELEMHCIKGIGADHAKFSPVAT 243
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY------- 231
T+ PEI I M + E+ + + + P V + T G Y
Sbjct: 244 ATYRLLPEIRI----MRPIIGEDARKFAKCFPKGVIGFEKITPAEAAQKGSGYEGHAGED 299
Query: 232 ---VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
VVD T E ++ E K V++ D FIF VESTG + L L +++V
Sbjct: 300 KAVVVDPFKDTVSRECLRHDEFKDK---VKLGRVRDHFIFNVESTGQFPSDTLFLESVKV 356
Query: 289 LKQKLDAVRLSED 301
L KL VRL D
Sbjct: 357 L--KLKCVRLKRD 367
>gi|358365562|dbj|GAA82184.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus kawachii IFO 4308]
Length = 373
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 147/311 (47%), Gaps = 54/311 (17%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 79
A F L DAS+ANA RR+++AEVP+IAI+ V + N+SV+ DE +A RLGLIPL + E
Sbjct: 64 ASFSLIGVDASIANAFRRILMAEVPSIAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVE 123
Query: 80 RAMSMRFSRDC--DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSS 128
MR+ + D +G ++ ++ L +C + D D +Y+
Sbjct: 124 GINWMRWFKKPTDDDPNGSNPADYNTIVLRLDVECTKNPNADPEEDDPRKLYKNAHVYAK 183
Query: 129 DHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
D + PV D + P D I++ KLR GQ + + KGIG DHA
Sbjct: 184 DITFHPVGRQEQFFAGDDAIQPVNPD-------ILVAKLRPGQSIEMELHCIKGIGADHA 236
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--------- 229
K+SP AT T+ P+I I + + ++ + + + P+ V ++ T +
Sbjct: 237 KFSPVATATYRLLPDIKI----LRPIIGDDAKKFAKCFPSGVIGLEKVTREEAKQKDSGY 292
Query: 230 --------VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
VVD T E ++ E GK V++ D FIF +ES G ++ L
Sbjct: 293 EGHEGELKAVVVDPFKDTVSRECLRHEEFQGK---VKLGRVRDHFIFNIESVGQFESDTL 349
Query: 282 VLNAIEVLKQK 292
L +++VLK K
Sbjct: 350 FLESVKVLKLK 360
>gi|125984360|ref|XP_001355944.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
gi|54644262|gb|EAL33003.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 149/289 (51%), Gaps = 25/289 (8%)
Query: 19 DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS 78
+D +F++ ++ANA RR+M++EVP++AI+ V I N+S++ DE +AHR+GL+PL +
Sbjct: 50 EDGLEFDMIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLKA 109
Query: 79 E-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSDHSVVPV 135
+ R + R G+ E ++E+ L+ KC D + D ++ D +H V
Sbjct: 110 DPRLFAYRTEE-----SGEAGTEQDTLEYELKVKCTRRKDASKDQSNFDDIYKNHKVYSG 164
Query: 136 DF-VDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
P G + I+I +LR G EL LR +A KG+GKDHAK+SP AT
Sbjct: 165 HLKWLPKGKQAQIYSESMVNCIHEDILIAQLRPGHELDLRLVAVKGLGKDHAKFSPVATA 224
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
+ P+I +N ++ + + + SP V ID N YV DA + V +
Sbjct: 225 YYRLLPQIKLNREVYGKDAYLLQSCF---SPG-VIGIDENEC-AYVKDARYDSCSRNVYR 279
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
+ L + D +IFTVES G++K + L A++VLK+K A
Sbjct: 280 YPQLEDSVTLGRV---RDHYIFTVESVGSLKPDVIFLEAVKVLKKKCRA 325
>gi|301626012|ref|XP_002942192.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Xenopus (Silurana) tropicalis]
Length = 347
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 160/309 (51%), Gaps = 31/309 (10%)
Query: 2 DGASYQRFP---KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D +Y RF ++ I +++ D +F++ DAS+ANA RR+++AEVPT+A++ V + N
Sbjct: 38 DTWNYGRFENNFRIDIVKMEGDTLEFDMVGIDASIANAFRRILLAEVPTMAVEKVYVYNN 97
Query: 59 SSVLNDEFIAHRLGLIPL-TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ- 116
+S++ DE +AHRLGLIP+ R R A +G+G E +++F L KC +
Sbjct: 98 TSIIQDEILAHRLGLIPIRVDPRLFEYR-----SAEEGEGT-EIDTLQFELNVKCTRNPR 151
Query: 117 -TLDVTSKDLYSSDHSVVPVDF-VDPAG-----YDSTDQQRG----IIIVKLRRGQELRL 165
+ D + + +H V P G + TD R I+I +LR GQE+ +
Sbjct: 152 ASKDCSDPNELYLNHKVYTSHMKWLPQGNQSDLFPETDPPRPVHGDILIAQLRPGQEISV 211
Query: 166 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDP 225
KGIGKDHAK+SP AT ++ PEI + + L+ ++ + SP V +D
Sbjct: 212 IMHCVKGIGKDHAKFSPVATASYRLLPEITLLCPIEGELADRLQRCF---SP-GVIGVDE 267
Query: 226 NTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
G+ V++A T E+ + + LV + D +IF+VESTG + LV
Sbjct: 268 VDGKRVARVINARTDTCGREIFRHDDLK---DLVRMARVRDYYIFSVESTGILPPDILVS 324
Query: 284 NAIEVLKQK 292
AI+VL K
Sbjct: 325 EAIKVLMGK 333
>gi|291000877|ref|XP_002683005.1| predicted protein [Naegleria gruberi]
gi|284096634|gb|EFC50261.1| predicted protein [Naegleria gruberi]
Length = 398
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 155/310 (50%), Gaps = 28/310 (9%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+Q ++ I + ++ FE+ DA +ANA RR+M++EVP++AI+ V N+S++ DE
Sbjct: 53 FQENLRINILKRDENDLVFEMIGIDAPIANAFRRIMLSEVPSMAIEKVVYLTNTSIIQDE 112
Query: 66 FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--------HSDQT 117
+AHR+GL+P+ + F+RD + + + + F L C H+
Sbjct: 113 VLAHRIGLVPIRCDPDFFF-FARDINQNEDIILLDNEYILFELNVTCEKTLVPNPHNQNK 171
Query: 118 LDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG----IIIVKLRRGQELRLRAIARKGI 173
L+ +YS D VP+ ++ + R I++ KL GQ + ++ KGI
Sbjct: 172 LEYKHSKVYSGDLKWVPIG-NQSTHFNGENAIRPVYDDILLAKLNPGQSIHVQCYCVKGI 230
Query: 174 GKDHAKWSPAATVTFMYEPEIHIN-EDLMESLSLEEKQSWVESSPTKVFDID--PNT--- 227
G+ HAKW P AT T+ PE+ E + E L++ + VE P VFDI+ P T
Sbjct: 231 GRSHAKWQPVATATYRLMPEVVFKGEPVTE---LKQAKELVEKCPMNVFDIEDSPQTEFD 287
Query: 228 GQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKA--SQLVLNA 285
+V V T E I++ + +++ +D FIF++ES G+I +++ A
Sbjct: 288 SKVRVARPMNCTMCRECIREDNWDKR---IQLSRVKDHFIFSIESVGSIPGGPAEIFRRA 344
Query: 286 IEVLKQKLDA 295
+++ QK +A
Sbjct: 345 LKIFWQKCEA 354
>gi|50740586|ref|XP_419502.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Gallus gallus]
Length = 346
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 151/295 (51%), Gaps = 32/295 (10%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
+RE +D +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHRLGL
Sbjct: 54 VRE-EDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGL 112
Query: 74 IPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-------- 124
IP+ ++ R R D + + D +++F L+ KC + S D
Sbjct: 113 IPIRADPRLFEYRNQGDEEGTEID------TLQFQLKIKCSRNPQAAKESSDPNELYFNH 166
Query: 125 -LYSSDHSVVPV----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+YS + VP+ D A + I+I LR GQE+ + KGIGKDHAK
Sbjct: 167 KVYSKHMTWVPLGNQTDLFPDADFRPVHDD--ILIALLRPGQEIDVLMHCVKGIGKDHAK 224
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAEA 237
+SP AT ++ P+I L++ + E ++ + V +I G+ V +A
Sbjct: 225 FSPVATASYRLLPDI----TLLQPVEDEAAETLQKCFSPGVIEIQNIKGKKVARVANARL 280
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
T+ EV + G LV + + +IF+VESTG + LV AI++L K
Sbjct: 281 DTFSREVFRHE---GLKNLVRLARVRNHYIFSVESTGILPPDVLVTEAIKILMGK 332
>gi|297840495|ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
Length = 385
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 150/312 (48%), Gaps = 39/312 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV + L + Y F++ A +ANA RR+++AE+P++AI+ V + N+SV+ DE +AHR
Sbjct: 82 KVDVISLTETYMVFDMIGVPAGIANAFRRILLAELPSMAIEKVFVANNTSVIQDEVLAHR 141
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHS---------------- 114
LGLIP+ ++ + S + D E ++ F L KC
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCPKGDPRRKVLTSELKWLP 195
Query: 115 ------DQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
++ +T+K + S F A T + I+I KL GQE+ L A
Sbjct: 196 NGSELVKESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQDILIAKLGPGQEIELEAH 255
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
A KGIGK HAKWSP AT + PE+ L++ + + V+ P KVFDI+ + G
Sbjct: 256 AVKGIGKTHAKWSPVATAWYRMLPEV----ILLKEFEGKHAEELVKVCPKKVFDIE-DMG 310
Query: 229 Q----VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
Q V + E I++ K V++ ++ FIFT+ESTG+ L
Sbjct: 311 QGRKRATVARPRDCSLCRECIREGVEWAK--QVDLRRVKNHFIFTIESTGSQPPDVLFNE 368
Query: 285 AIEVLKQKLDAV 296
A+++L+ K + V
Sbjct: 369 AVKILEDKCERV 380
>gi|212276110|ref|NP_001130839.1| uncharacterized protein LOC100191943 [Zea mays]
gi|194690246|gb|ACF79207.1| unknown [Zea mays]
gi|413926820|gb|AFW66752.1| hypothetical protein ZEAMMB73_992882 [Zea mays]
Length = 372
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 149/310 (48%), Gaps = 47/310 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++I L +DY +F++ DAS+ANA RR++I+EVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KIEINRLTEDYMEFDMIGIDASIANAFRRILISEVPTMAIEKVFMADNNSVIADEVLSHR 132
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDL---- 125
LGLIPL ++ + S + D E ++ + L C + Q + V S +L
Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPNERNTIVYKLHVSCPKNSQRITVKSSELEWLP 186
Query: 126 -----------YSSDHSVVPVDFVD--------PAGYDSTDQQRGIIIVKLRRGQELRLR 166
S D F P G D I I +L GQ + L
Sbjct: 187 EGSQLSMSAPAQSGDKQKTFTSFSQSQKEILEKPLGVKYKD----ITIARLGPGQAIELE 242
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID-- 224
A A KG G HAKWSP AT + PE+ I ++ + + + V VFDI+
Sbjct: 243 AHAVKGTGNVHAKWSPVATAWYRMLPEVVI----LKEVEGPQAEELVNKCRVNVFDIEDL 298
Query: 225 PNTGQVYVV-DAEAYTYDDEVIKKAEAMG-KPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
N G+ VV A T E + MG VE+ D FIFT+ESTG++ L
Sbjct: 299 ANGGKRAVVARPRACTLCRECV-----MGPNEKQVELRRVRDHFIFTIESTGSMPPEVLF 353
Query: 283 LNAIEVLKQK 292
A+++L++K
Sbjct: 354 TEAVKILEEK 363
>gi|21592304|gb|AAM64255.1| RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 154/323 (47%), Gaps = 47/323 (14%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G Y F KV + L +F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVFIAYNTSVI 126
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVT 121
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 180
Query: 122 SKDL-------------------------YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVK 156
+ DL +S +P +F A T I+I K
Sbjct: 181 TSDLKWLPNGSELLRESENKTSKLKTYTSFSCSQDSLP-EF---ANNPITPCDLDILIAK 236
Query: 157 LRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESS 216
L GQE+ L A A KGIGK HAKWSP T + PE+ + ++ + L+ + V
Sbjct: 237 LAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVC 292
Query: 217 PTKVFDI-DPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVEST 273
P VFDI D G+ V T E ++ + + L + ++ FIF +EST
Sbjct: 293 PQNVFDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSV---KNHFIFNIEST 349
Query: 274 GAIKASQLVLNAIEVLKQKLDAV 296
G++ L A+++L+ K +A+
Sbjct: 350 GSLPPEVLFTEAVKILEAKCEAI 372
>gi|326428554|gb|EGD74124.1| RNA polymerase subunit I [Salpingoeca sp. ATCC 50818]
Length = 328
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 152/304 (50%), Gaps = 27/304 (8%)
Query: 2 DGASYQRFP---KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D +Q F K++++ + +F++ DA++ANA+RR++I+EVPT+AI+ I N
Sbjct: 24 DAYDFQAFKEKFKIEMQAIDGMDMEFDMIGVDAAIANAVRRILISEVPTMAIEQAYIYHN 83
Query: 59 SSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL 118
SSVL DE +AHR+GLIPL A+ R R + D + + ++ F L +C +
Sbjct: 84 SSVLPDEMLAHRIGLIPL----AVDARRFRTLEE-DNNEMNDLNTLVFDLDVECKHREGA 138
Query: 119 DV--TSKDLYSSDHSVVPVDFVDPAGYDSTDQ--------QRGIIIVKLRRGQELRLRAI 168
T K+ +H V+ D + D+ I IV+LR GQ + +
Sbjct: 139 KAGETDKNKKYINHMVMSSDIKWQPKGNQKDRFKTAICPVHEDIPIVELRPGQRVSMELH 198
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KG+GK HAKWSP AT ++ P I + + + L+ +Q + + I+ G
Sbjct: 199 CSKGVGKLHAKWSPVATASYRNAPHIVLKQRVTGDLAYRLQQCFTDGV------IEVRDG 252
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
+ VV++ A E ++ + LV + + FIF VESTGA++ LV A+ V
Sbjct: 253 EAEVVNSRADMMSREHLRHDDL---APLVHTTRRRNHFIFQVESTGALEPDVLVCEAVGV 309
Query: 289 LKQK 292
LK K
Sbjct: 310 LKDK 313
>gi|358055076|dbj|GAA98845.1| hypothetical protein E5Q_05533 [Mixia osmundae IAM 14324]
Length = 368
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 142/302 (47%), Gaps = 25/302 (8%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ I L +F++ DA++ANALRR+MIAEVPT+AI+ V + N+S++ DE ++ RL
Sbjct: 64 ISILSLSPSEIEFDIIGIDAAIANALRRIMIAEVPTVAIETVFVFNNTSIVQDEVLSQRL 123
Query: 72 GLIPL-TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYS 127
GL+PL + R + + +G + +V F L AKC D KD LY
Sbjct: 124 GLVPLKINPRQIDFK-------TPDEGPTDLNTVVFSLLAKCEHRPGHDPDEKDPDELYI 176
Query: 128 SDHSVVPVDFVDPAGYDS----TDQQRG------IIIVKLRRGQELRLRAIARKGIGKDH 177
+ P G TD R I++ KLR GQ + + KG GK H
Sbjct: 177 DSNVFSGKLEWKPQGAQESMFDTDATRPRPVQDDILLAKLRPGQTISVELHCNKGNGKTH 236
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA 237
AKWSP AT ++ P I I + + E L + K + D+D T V D
Sbjct: 237 AKWSPVATASYRLMPHIRILKPIPEHLCEKFKSCFQPGVIGIKRDLD-GTKCCSVDDPRR 295
Query: 238 YTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
T EV++ E G V + D FI+ VESTG + L+ A V+ K+ AVR
Sbjct: 296 DTVSREVLRHPEFE---GYVSLGRVRDHFIYNVESTGQYEPEDLLEEACGVMLSKIQAVR 352
Query: 298 LS 299
S
Sbjct: 353 AS 354
>gi|67523919|ref|XP_660019.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|40745370|gb|EAA64526.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|259487823|tpe|CBF86802.1| TPA: DNA-directed RNA polymerase I and III subunit Rpc40, putative
(AFU_orthologue; AFUA_2G13720) [Aspergillus nidulans
FGSC A4]
Length = 373
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 151/315 (47%), Gaps = 40/315 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V + K A F L DAS+ANA RR+++AEVPT+AI+ V I N+SV+ DE +A R
Sbjct: 53 RVDFHQNKKFEASFSLIGLDASIANAFRRIVMAEVPTLAIEWVYIHNNTSVIQDEVLAQR 112
Query: 71 LGLIPL--TSERAMSMR-FSRDCDACDGDGQ--CEFCSVEFHLRAKCHSDQTL---DVTS 122
LGLIPL + E M+ +++ + G G ++ +V L +C + +
Sbjct: 113 LGLIPLQGSVEGLNWMQWYNKGSEDEPGSGSDLADYNTVVLRLDVECTKNPNASRDETDP 172
Query: 123 KDLYSSDHSVVPVDFVDPAG-----YDSTDQQRG----IIIVKLRRGQELRLRAIARKGI 173
+ LY + H P G + R I++ KLR GQ++ L KGI
Sbjct: 173 RKLYKNAHVYAKDIVFHPVGRQEEFFTGEGAIRAVNPDILVAKLRPGQKIELEMHCIKGI 232
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT------ 227
G DHAK+SP AT T+ P I I + + E+ + + + P V ++P T
Sbjct: 233 GADHAKFSPVATATYRLMPVIQI----LRPIIGEDAKKFAKCFPKGVIGLEPITAEDERQ 288
Query: 228 --------GQVYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 277
G++ V +A+ T E ++ E GK L I D FIF +ESTG
Sbjct: 289 NAEYRGRGGELKAVVRDAFNDTVSRECLRHDEFKGKVKLGRI---RDHFIFNIESTGQFD 345
Query: 278 ASQLVLNAIEVLKQK 292
+ L L +++VLK K
Sbjct: 346 SDVLFLESVKVLKLK 360
>gi|344264275|ref|XP_003404218.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Loxodonta africana]
Length = 306
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 163/310 (52%), Gaps = 36/310 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHR
Sbjct: 10 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 69
Query: 71 LGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC---------HSDQTLDV 120
LGLIP+ ++ R R D + + D +++F L+ +C SD +
Sbjct: 70 LGLIPIHADPRLFEYRNQEDEEGTEID------TLQFRLQVRCTRNPHASKDSSDPSELY 123
Query: 121 TSKDLYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
+ +Y+ + VP+ V P G I+I +LR GQE+ L KGIGKDH
Sbjct: 124 VNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD-DILIAQLRPGQEIDLLMHCVKGIGKDH 182
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDA 235
AK+SP AT ++ P+I + E + + E +Q + SP V ++ G+ V +
Sbjct: 183 AKFSPVATASYRLLPDITLLEPVEGEAAEELRQCF---SPG-VIEVQEVQGKKVARVANP 238
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK--- 292
T+ EV + E + K +V + D +IF+VESTG + LV AI+VL K
Sbjct: 239 RLDTFSREVFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRR 295
Query: 293 ----LDAVRL 298
LDAV++
Sbjct: 296 FLDELDAVQM 305
>gi|119719198|ref|YP_919693.1| RNA polymerase, insert [Thermofilum pendens Hrk 5]
gi|119524318|gb|ABL77690.1| DNA-directed RNA polymerase, subunit D [Thermofilum pendens Hrk 5]
Length = 283
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 141/278 (50%), Gaps = 22/278 (7%)
Query: 18 KDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 77
K + F LR+T + ANALRR +I+EVP +AID V + N+S L DE IAHRL L+PL
Sbjct: 5 KQNRLVFMLRNTTPAFANALRRALISEVPILAIDEVIVTENTSALWDEMIAHRLALVPLK 64
Query: 78 SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF 137
+ + RD D Q V F L + ++ V S L P+
Sbjct: 65 ID-PETYDALRDLYEQGKDPQ-----VIFSLEEEA-GERPRTVLSGHLRFEGIEGAPLP- 116
Query: 138 VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
+ AG + + I I+KL +GQ++ L AIAR G G+ HAKW P V + Y+P + I
Sbjct: 117 PESAGIEPVS--KNIPILKLGKGQKISLTAIARMGTGRQHAKWQPVGPVGYKYKPVVRI- 173
Query: 198 EDLMESLSLEEKQSWVESSPTKVFD-IDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL 256
L E L +E + + P +VF +D G++ V++ + E +K PG+
Sbjct: 174 --LREDLPEDEALKIISTCPRRVFGYVD---GKLTVINEMQCSLCRECEEKF-----PGI 223
Query: 257 VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
VE+ + I TVES G + +L+ A +VL +KLD
Sbjct: 224 VEVDGDPSNIILTVESIGCLPPEKLLAVAADVLSKKLD 261
>gi|15678067|ref|NP_275181.1| DNA-directed RNA polymerase subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122766|sp|O26144.1|RPOD_METTH RecName: Full=DNA-directed RNA polymerase subunit D
gi|2621073|gb|AAB84545.1| DNA-dependent RNA polymerase, subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 264
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 139/287 (48%), Gaps = 34/287 (11%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ ++E D F + NA+RR+ + EVP +AI+ V + N + + DE +AHRL
Sbjct: 3 IALKEKTDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRL 62
Query: 72 GLIPLTS--ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
GL+PL + E A S++ +CD + C CSV LR K V S DL S
Sbjct: 63 GLVPLAADPEFAESLKMPEECDC---EEYCSECSVSLTLRKK----GPGVVYSGDLVSET 115
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+V PV + D I +VKL EL L A+A+ G+G++HAKW P +
Sbjct: 116 PAVKPV-YPD------------IPLVKLGDDDELELEAVAQLGVGREHAKWEPTTACAYK 162
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y P I +ED E L +E+ P V + +G+ VVD E + ++ +
Sbjct: 163 YYPRIEFSEDCDECLEC------IEACPRDV--LGEESGKPVVVDLENCSMCKSCVRACD 214
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+++ +E FIF +E+ G++ ++L A ++L+ K + V
Sbjct: 215 KRA----IDVGYEEGKFIFRIETDGSVDPKDVLLKACDILRDKAEQV 257
>gi|575586|dbj|BAA06735.1| mouse RNA polymerase I 40kD subunit [Mus musculus]
Length = 355
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 161/320 (50%), Gaps = 29/320 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + ++ +D +F++ DA++ANA RR+++A VPT+A++ V + N+S+
Sbjct: 50 DQNRFEKNFRVGVVQMDEDTLEFDMVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSI 109
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R + + + D +++F L+ +C +
Sbjct: 110 VQDEILAHRLGLIPILADPRLFEYRNQGEEEGTEID------TLQFRLQVRCTRNPNAAK 163
Query: 121 TSKD---------LYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
S D +Y+ + VP+ V P G I+I +LR GQE+ L
Sbjct: 164 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD-DILIAQLRPGQEIDLMMH 222
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ P I L+E + E + + V +++ G
Sbjct: 223 CVKGIGKDHAKFSPVATASYRLLPAI----TLLEPVEGEAAEELSQCFSPGVIEVEEVQG 278
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V +A T+ E+ + E + K V + D +IF+VESTG + LV AI
Sbjct: 279 KKVARVANARLDTFSREIFRH-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAI 335
Query: 287 EVLKQKLDAVRLSEDTVEAD 306
++L K D VE D
Sbjct: 336 KILMGKCRRFLDELDAVEMD 355
>gi|57094492|ref|XP_532147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Canis lupus familiaris]
Length = 346
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D D E +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +YS + VP+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + + + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGDAAEELSRCFSPGVIEVQEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ EV +K E + K +V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREVFRK-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCRRFLDELDAVQM 345
>gi|417409912|gb|JAA51445.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 347
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RRV++AEVPT+A++ V + N+S+
Sbjct: 42 DQDRFEKNFRVDVIHMDENTLEFDMVGIDAAIANAFRRVLLAEVPTMAVEKVLVYNNTSI 101
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 102 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNSHAAK 155
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + VP+ D T + I+I +LR GQE+ L
Sbjct: 156 DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDGTIRPVHDDILIAQLRPGQEIDLLMHC 215
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 216 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELRRCFSPGVIEVHEVQGK 271
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ EV + E + K +V + D +IF+VESTG + LV AI+
Sbjct: 272 KVARVANPRLDTFSREVFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 328
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 329 VLMGKCRRFLDELDAVQM 346
>gi|71013592|ref|XP_758635.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
gi|46098293|gb|EAK83526.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
Length = 320
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 119/228 (52%), Gaps = 29/228 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV + L D +F+L DAS+ANA+RRV++AEVPT+AI+ V I N+S++ DE ++HR
Sbjct: 94 KVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 153
Query: 71 LGLIPLT-SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL----------- 118
LGL+PL + ++MR GD + +V FHL+AKC +++
Sbjct: 154 LGLVPLAINPDKVAMRMP-------GDEADDSNTVVFHLKAKCERNRSAARGETDPDKLY 206
Query: 119 ---DVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGK 175
+V S+ L DF D D+ I+I KLR GQEL L KGIGK
Sbjct: 207 IGHNVYSEQLRWDAKGGQEKDFADSPPRPVQDK---ILIAKLRPGQELDLELHCEKGIGK 263
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI 223
DHAK+SP AT T+ P I L++ + E +V P V +
Sbjct: 264 DHAKFSPVATATYRLLPHIQ----LLQPIPDESIDKFVSCFPPGVIGV 307
>gi|322708977|gb|EFZ00554.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 381
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 152/317 (47%), Gaps = 45/317 (14%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V + + + + F L DAS+ANA RR++IAE+PT+AI+ V IE N+SV+ DE +AHRL
Sbjct: 61 VNFHQNEANSSSFSLMGLDASLANAFRRILIAEIPTLAIENVYIENNTSVIQDEVLAHRL 120
Query: 72 GLIPLTSERAMSMRFSRDCDACDGD-----GQCEFCSVEFHLRAKC--HSDQTLD----- 119
GLIP R F + + + G ++ +V L C + D D
Sbjct: 121 GLIPFNGGRDGLKNFLKWHKKPEAEEDPYAGCFDYNTVRLELNVTCTVNPDAAPDERDPL 180
Query: 120 --VTSKDLYSSDHSVVP----VDFVDPAGYDSTDQ-QRGIIIVKLRRGQELRLRAIARKG 172
+ +Y+ D VP V+F +G D+ I+I KLR Q + L KG
Sbjct: 181 EAFNNAHVYAKDIVFVPTGKQVEFF--SGEDAIAPVNPDILIAKLRPRQTINLSMHMHKG 238
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT----- 227
IG DHAK+SP AT ++ P I I + ++ + + + + P V ++ T
Sbjct: 239 IGADHAKFSPVATASYRLMPTIKILKPILGA----DAEKFARCFPQGVIGLEKVTPAEAK 294
Query: 228 --GQVY----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGA 275
G Y V DA T E ++ AE GK V++ + D FIF++ESTG
Sbjct: 295 KAGSGYEGHAGVKKAVVKDAMKDTVSRECLRHAEFEGK---VKLGRRRDHFIFSIESTGQ 351
Query: 276 IKASQLVLNAIEVLKQK 292
+ +L + AI+ +K K
Sbjct: 352 WDSDELFMEAIKHMKLK 368
>gi|427788233|gb|JAA59568.1| Putative rna polymerase i and iii subunit [Rhipicephalus
pulchellus]
Length = 344
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 148/302 (49%), Gaps = 26/302 (8%)
Query: 6 YQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
+Q+F K V I + D +F+L D S+ANA+RR+++AEVPT+A D V + N+ ++
Sbjct: 39 FQKFVKKFRVGIISMDDTTIEFDLVGLDPSIANAIRRILLAEVPTMAPDKVYLYNNTGII 98
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL--DV 120
DE +AHR+GL+P + M + D D +VEF L+ KC + D
Sbjct: 99 QDEVLAHRIGLVPFNIDPRMFEYRESESDGSPED------TVEFELKVKCTKNPQAPKDA 152
Query: 121 TSKDLYSSDHSVVPVDFV-DPAGYDS--------TDQQRGIIIVKLRRGQELRLRAIARK 171
T+ D DH V +P G + II+ KLR GQE+ L+ K
Sbjct: 153 TTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVHDDIILAKLRPGQEIDLKLHCVK 212
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV- 230
G G+ HAK+SP AT ++ PEI + + + + E+ S D +P+ +V
Sbjct: 213 GTGQVHAKFSPVATASYRLLPEIRLLRPVRDEQA--ERLQGCFSKGVIELDEEPDGHKVA 270
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
V +A A T V + + VE+ +D +IF+VESTGA LV AI+VL
Sbjct: 271 RVANARADTCSRNVFRFDDLKDA---VELSRVKDHYIFSVESTGAYAPDTLVTEAIKVLM 327
Query: 291 QK 292
K
Sbjct: 328 AK 329
>gi|301757344|ref|XP_002914512.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Ailuropoda melanoleuca]
gi|281345711|gb|EFB21295.1| hypothetical protein PANDA_002414 [Ailuropoda melanoleuca]
Length = 346
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 157/308 (50%), Gaps = 33/308 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + L ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHLDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLR 166
SD + +Y+ + VP+ F + A D I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGAIRPVHDD---ILIAQLRPGQEIDLL 211
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++
Sbjct: 212 MHCVKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEV 267
Query: 227 TGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
G+ V + T+ EV + E + K +V + D +IF+VESTG + LV
Sbjct: 268 QGEKVARVANPRLDTFSREVFRN-EKLKK--MVRLARVRDHYIFSVESTGVLPPDVLVSE 324
Query: 285 AIEVLKQK 292
AI+VL K
Sbjct: 325 AIKVLMGK 332
>gi|212223251|ref|YP_002306487.1| DNA-directed RNA polymerase subunit D [Thermococcus onnurineus NA1]
gi|212008208|gb|ACJ15590.1| DNA-directed RNA polymerase, subunit D [Thermococcus onnurineus
NA1]
Length = 260
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 138/293 (47%), Gaps = 54/293 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK +I E ++D KF + D ANALRR ++AEVPT A+D VE N S L DE IAH
Sbjct: 3 PKFRILEKREDSIKFIVEGIDIPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RL +IPLT+ RFS D D +V L A+ V S DL S D
Sbjct: 63 RLAMIPLTTPVE---RFSLDALELDD------YTVTLSLEAEGPG----MVYSGDLKSDD 109
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V P + I IVKL GQ L L A A+ G GKDHAKW P V +
Sbjct: 110 EGVKPAN-------------PNIPIVKLAEGQNLTLNAYAKLGRGKDHAKWQPGF-VYYK 155
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y +IH+++D+ + EE ++ E V + D ++ VI +
Sbjct: 156 YLTKIHVSKDVPD---WEELKALAEKRGLPVEETD----------------EELVITTTK 196
Query: 250 AMGKPGLVEIYAKE--------DSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
A P E Y + ++F+FTVES G + ++V A+++L +K D
Sbjct: 197 AFYLPRKFEPYEGDKIREEVVPNTFVFTVESNGELPVEEIVTIALKILMRKSD 249
>gi|169603299|ref|XP_001795071.1| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
gi|160706369|gb|EAT88418.2| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
Length = 350
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/323 (31%), Positives = 159/323 (49%), Gaps = 43/323 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KVK F L D S+ANA RR+++AE+PT+AI+ V I N+S++ DE +AHR
Sbjct: 27 KVKFHTHSPHDTSFSLTGIDTSVANAFRRILLAEIPTLAIEDVFIYQNTSIIQDEVLAHR 86
Query: 71 LGLIPLT-SERAMSM--RFSRDCDACDGDGQ-CEFCSVEFHLRAKCHSDQ------TLDV 120
LGLIPL S + + + ++ D +G G ++ +V L +C +
Sbjct: 87 LGLIPLCGSHKGLRWLKWYKKETDDDEGSGTPSDYNTVIMKLDVECSWQEGGLQRAVQGE 146
Query: 121 TSKDLYSSDHSVVPVDFV-DPAG-----YDSTDQQRG----IIIVKLRRGQELRLRAIAR 170
T D H+V D V +P G + S ++ R I+IVK+R GQ+++L A
Sbjct: 147 TDPDKLYIGHNVYAKDLVWEPLGKQFDEFPSGEEIRATNPDILIVKMRPGQKIQLSMHAI 206
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF--------D 222
KGIG+DHAK+SP AT ++ P I D+++ + + + + P V D
Sbjct: 207 KGIGQDHAKFSPVATASYRLMPTI----DILKPIVGADAKKFARCFPRGVIKLETVTSED 262
Query: 223 IDPNT---GQ-----VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTG 274
++ NT GQ V D T E ++ E K L I D FIF VESTG
Sbjct: 263 VEKNTELAGQEGESKAVVDDPMKDTVSRECLRHPEFKDKVNLGRI---RDHFIFRVESTG 319
Query: 275 AIKASQLVLNAIEVLKQKLDAVR 297
++ +L L ++++LK K ++
Sbjct: 320 QWESDELFLESVKLLKVKCQRIK 342
>gi|222445013|ref|ZP_03607528.1| hypothetical protein METSMIALI_00629 [Methanobrevibacter smithii
DSM 2375]
gi|222434578|gb|EEE41743.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2375]
Length = 274
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 148/302 (49%), Gaps = 45/302 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++++ DD F +RD + NA+RR + VP IAI+ V I N S + +E +AHR
Sbjct: 2 EIEVKSQTDDEIVFIVRDAEVPFINAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEVLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDG------DGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
LGL PL S + DA +G D E SV F L+ + V SKD
Sbjct: 62 LGLTPLVS----------NMDAIEGLPLPGDDDYEENNSVMFSLK----EEGPKVVYSKD 107
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L SSD + PV YD+ I +VKL+ G++L + A+A+ G GK+HAKW P
Sbjct: 108 LISSDSKIKPV-------YDT------IPLVKLKEGEKLNIEAVAKVGYGKEHAKWMPTT 154
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
+ PEI NED+ + E ++ P V D + ++ ++D E
Sbjct: 155 VCVYKQYPEITFNEDV--GIDYE----CADACPRGVLKSDKRSKEIKILDIENCAMCKSC 208
Query: 245 ----IKKAEAMGK-PGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA-VRL 298
I+ A++ GK + + E+ FIF +E+ G++ +++L A + L +K D +R
Sbjct: 209 VRASIRNAQSEGKDESYINVGYHENDFIFRIETDGSMPPKEVLLQACDELGEKADKFIRF 268
Query: 299 SE 300
SE
Sbjct: 269 SE 270
>gi|146322984|ref|XP_755705.2| DNA-directed RNA polymerase I and III subunit Rpc40 [Aspergillus
fumigatus Af293]
gi|129558558|gb|EAL93667.2| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus Af293]
Length = 374
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 146/305 (47%), Gaps = 41/305 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 79
+ F L DAS+ANA RR+++AEVPT+AI+ V + N+SV+ DE +A RLGLIPL + E
Sbjct: 64 SSFSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVE 123
Query: 80 RAMSMRFSRDC---DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVV 133
MR+ + D G ++ ++ L +C + D LY + H
Sbjct: 124 GLNWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYA 183
Query: 134 PVDFVDPAGY-------DSTDQ--QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
P G D Q I+I KLR GQ++ + KGIG DHAK+SP A
Sbjct: 184 KDITFHPVGRQEQFFTGDGAIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVA 243
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT---------------GQ 229
T T+ P+I I + + E+ + + + P V +++P T G+
Sbjct: 244 TATYRLMPDIKI----LRPIIGEDAKKFAKCFPKGVIELEPVTSREAAQKGSEYEGRAGE 299
Query: 230 VYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
+ V + + T E ++ E GK L I D FIF VESTG ++ L L +++
Sbjct: 300 MKAVVRDPFKDTVSRECLRHEEFQGKVKLGRI---RDHFIFNVESTGQFESDYLFLESVK 356
Query: 288 VLKQK 292
VLK K
Sbjct: 357 VLKLK 361
>gi|300707120|ref|XP_002995782.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
gi|239604995|gb|EEQ82111.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
Length = 233
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 104/181 (57%), Gaps = 20/181 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I E D+ KF LRDT S ANALRR++I+EVPT+ IDLVEIE+N++ L DE I+HR
Sbjct: 2 KILIEESTDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PL +++ + R CD C+ CSV L ++D + VT KDL S D
Sbjct: 62 LGLVPLYTKKDLVFRDDCACDD-----ICDKCSVSLTLNVSNNTDMPMVVTCKDLKSQDD 116
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V+ + +I KL Q L++ A KG+GK H+KWSP + V F Y
Sbjct: 117 VVI---------------RSSPVICKLGTRQNLKVICKAFKGVGKIHSKWSPVSVVGFEY 161
Query: 191 E 191
+
Sbjct: 162 D 162
>gi|159129762|gb|EDP54876.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus A1163]
Length = 414
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 146/305 (47%), Gaps = 41/305 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 79
+ F L DAS+ANA RR+++AEVPT+AI+ V + N+SV+ DE +A RLGLIPL + E
Sbjct: 104 SSFSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVE 163
Query: 80 RAMSMRFSRDC---DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVV 133
MR+ + D G ++ ++ L +C + D LY + H
Sbjct: 164 GLNWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYA 223
Query: 134 PVDFVDPAGY-------DSTDQ--QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
P G D Q I+I KLR GQ++ + KGIG DHAK+SP A
Sbjct: 224 KDITFHPVGRQEQFFTGDGAIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVA 283
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT---------------GQ 229
T T+ P+I I + + E+ + + + P V +++P T G+
Sbjct: 284 TATYRLMPDIKI----LRPIIGEDAKKFAKCFPKGVIELEPVTSREAAQKGSEYEGRAGE 339
Query: 230 VYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
+ V + + T E ++ E GK L I D FIF VESTG ++ L L +++
Sbjct: 340 MKAVVRDPFKDTVSRECLRHEEFQGKVKLGRI---RDHFIFNVESTGQFESDYLFLESVK 396
Query: 288 VLKQK 292
VLK K
Sbjct: 397 VLKLK 401
>gi|303323289|ref|XP_003071636.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111338|gb|EER29491.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320035278|gb|EFW17220.1| RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 382
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 149/321 (46%), Gaps = 44/321 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-- 79
A F L DA++ANA RR++IAE+P++AI+ V I N+SVL+DE ++HRLGL+PL
Sbjct: 64 ATFSLIGVDAAVANAFRRILIAEIPSLAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLE 123
Query: 80 --RAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVV 133
MS R ++ + G + ++ L +C +Q D LY++ H
Sbjct: 124 GINWMSWFRMPKEGEPDSGSPASDSNTIVLKLNVECTKNQNARPDEDDPTKLYNNAHVYA 183
Query: 134 PVDFVDPAGYDST--DQQRGII--------IVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+P G + G+I + KLR GQ++ + KGIG+DHAK+SP
Sbjct: 184 KDIVFEPVGRQAAIFSGPHGVIQPAYPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPV 243
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ-------------- 229
AT ++ P+I I ++ + ++ ++ P V I+ T +
Sbjct: 244 ATASYRLLPDIQITRPILGNDAV----NFANCFPKGVIGIEQVTAEDAAQAGSGYEGQEG 299
Query: 230 ---VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
VVD T E ++ E GK V++ D FIF +ES G + L L ++
Sbjct: 300 EKKAVVVDPFKDTVSRECLRHEEFKGK---VKLGRVRDHFIFNIESVGQFNSDLLFLESV 356
Query: 287 EVLKQKLDAVRLSEDTVEADD 307
+VL KL RL + D
Sbjct: 357 KVL--KLKCARLKRNVAALAD 375
>gi|389624551|ref|XP_003709929.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|351649458|gb|EHA57317.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|440471601|gb|ELQ40590.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae Y34]
gi|440481959|gb|ELQ62489.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae P131]
Length = 373
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 145/310 (46%), Gaps = 53/310 (17%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR+MIAE+P++AI+ V I N+SV+ DE +A RLGL+PL +
Sbjct: 65 ASFSLIGVDASIANAFRRIMIAEIPSLAIERVFITNNTSVIQDEVLAQRLGLVPLKGSKE 124
Query: 82 MSMRFSRD---CDACDGDGQCEFCSVEFHLRAKC---------HSDQTLDVTSKDLYSSD 129
+F + + D +F +V L KC +D ++Y+SD
Sbjct: 125 GLRKFMKPFKRTETGGFDNSFDFNTVNLRLNVKCTRNPDAKPGENDPNKAYIKPNVYASD 184
Query: 130 HSVVPVDFVDPAGYDSTDQQRG----------IIIVKLRRGQELRLRAIARKGIGKDHAK 179
++FV PAG TD G I+I KLR GQ + L A G G DHAK
Sbjct: 185 -----IEFV-PAG-QQTDYFSGDGAIVPVNPDILIAKLRPGQGIDLEMHAHIGYGWDHAK 237
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG----------- 228
+SP T ++ P I D+++ + + + + + P V + P T
Sbjct: 238 FSPVCTASYRLMPII----DIVKPIVGADAEKFRDCFPDGVIRLQPVTAAEAKEKGSGYE 293
Query: 229 ------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
+ V D T E ++ AE GK V++ + D FIF++ES G + +L
Sbjct: 294 GHKGEMKAVVNDPMRDTVSRECLRHAEFEGK---VKLGRRRDHFIFSIESAGQWDSDELF 350
Query: 283 LNAIEVLKQK 292
L +I LK K
Sbjct: 351 LASIAELKSK 360
>gi|384495741|gb|EIE86232.1| hypothetical protein RO3G_10943 [Rhizopus delemar RA 99-880]
Length = 247
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 116/205 (56%), Gaps = 19/205 (9%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KVKI+ L +F+L DAS+ANA RR+MIAEVPT+AI+ V + N+S++ DE +AHR
Sbjct: 44 KVKIQRLSKHSVEFDLIGIDASIANAFRRIMIAEVPTMAIEKVYVMNNTSIIQDEVVAHR 103
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGD-GQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYS 127
LGLIP+ ++ ++ D D G + ++ F L+ KC + + + D T
Sbjct: 104 LGLIPILAD-------PKEFDYMTEDGGPTDLNTLVFRLKKKCEFNPEASPDETDPHKKY 156
Query: 128 SDHSVVPVDFV-DPAGYD----STDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHA 178
+ V D + +P G + + R I+I KLR GQE+ + +KG+G++HA
Sbjct: 157 INSYVYSKDLIWEPKGNQEEKFANNPPRPVHDDIVIAKLRPGQEMEMELHCQKGVGREHA 216
Query: 179 KWSPAATVTFMYEPEIHINEDLMES 203
KWSP AT ++ PEI I E + +S
Sbjct: 217 KWSPVATASYRLLPEITILEPITDS 241
>gi|119189173|ref|XP_001245193.1| hypothetical protein CIMG_04634 [Coccidioides immitis RS]
gi|392868091|gb|EAS33833.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 382
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 149/321 (46%), Gaps = 44/321 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-- 79
A F L DA++ANA RR++IAE+P++AI+ V I N+SVL+DE ++HRLGL+PL
Sbjct: 64 ATFSLIGVDAAVANAFRRILIAEIPSLAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLE 123
Query: 80 --RAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVV 133
MS R ++ + G + ++ L +C +Q D LY++ H
Sbjct: 124 GINWMSWFRMPKEGEPDSGSPASDSNTIVLKLNVECTKNQNARPDEDDPTKLYNNAHVYA 183
Query: 134 PVDFVDPAGYDST--DQQRGII--------IVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+P G + G+I + KLR GQ++ + KGIG+DHAK+SP
Sbjct: 184 KDIVFEPVGRQAAFFSGPHGVIQPAYPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPV 243
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ-------------- 229
AT ++ P+I I ++ + +++ + P V I+ T +
Sbjct: 244 ATASYRLLPDIQITRPILGNDAVK----FANCFPKGVIGIEQVTAEDAAQAGSGYEGQEG 299
Query: 230 ---VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
VVD T E ++ E GK V++ D FIF +ES G + L L ++
Sbjct: 300 QKKAVVVDPFKDTVSRECLRHEEFKGK---VKLGRVRDHFIFNIESVGQFNSDLLFLESV 356
Query: 287 EVLKQKLDAVRLSEDTVEADD 307
+VL KL RL + D
Sbjct: 357 KVL--KLKCARLKRNVAALAD 375
>gi|354492493|ref|XP_003508382.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cricetulus griseus]
Length = 302
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 158/310 (50%), Gaps = 36/310 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHR
Sbjct: 6 RVDVVHMDENTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 65
Query: 71 LGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD----- 124
LGLIP+ ++ R R + + + D +++F L+ +C + S D
Sbjct: 66 LGLIPILADPRLFEYRNPGEEEGTEID------TLQFRLQVRCTKNPNAAKDSSDPNELY 119
Query: 125 ----LYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
+Y+ + VP+ V P G I+I +LR GQE+ L KGIGKDH
Sbjct: 120 VNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD-DILIAQLRPGQEIDLVMHCVKGIGKDH 178
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDA 235
AK+SP AT ++ P+I L+E + E + V ++ GQ V +A
Sbjct: 179 AKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGQKLARVANA 234
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK--- 292
T+ E+ + E + K V + D +IF+VESTG + LV AI++L K
Sbjct: 235 RLDTFSREIFRN-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRR 291
Query: 293 ----LDAVRL 298
LDAV++
Sbjct: 292 FLDELDAVQM 301
>gi|119481605|ref|XP_001260831.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
gi|119408985|gb|EAW18934.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
Length = 374
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 146/305 (47%), Gaps = 41/305 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 79
+ F L DAS+ANA RR+++AEVPT+AI+ V + N+SV+ DE +A RLGLIPL + E
Sbjct: 64 SSFSLIGLDASIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVE 123
Query: 80 RAMSMRFSRDC---DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVV 133
MR+ + D G ++ ++ L +C + D LY + H
Sbjct: 124 GLNWMRWFKKPTEDDPESGSTPADYNTIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYA 183
Query: 134 PVDFVDPAGY-------DSTDQ--QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
P G D Q I+I KLR GQ++ + KGIG DHAK+SP A
Sbjct: 184 KDITFHPVGRQEQFFTGDGAIQPVNPDILIAKLRPGQKIDMELHCIKGIGADHAKFSPVA 243
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT---------------GQ 229
T T+ P+I I + + E+ + + + P V +++P T G+
Sbjct: 244 TATYRLMPDIKI----LRPIIGEDAKKFAKCFPKGVVELEPVTSREAAQKGSEYEGRAGE 299
Query: 230 VYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
+ V + + T E ++ E GK L I D FIF VESTG ++ L L +++
Sbjct: 300 MKAVVRDPFKDTVSRECLRHEEFQGKVKLGRI---RDHFIFNVESTGQFESDYLFLESVK 356
Query: 288 VLKQK 292
VLK K
Sbjct: 357 VLKLK 361
>gi|194766065|ref|XP_001965145.1| GF21532 [Drosophila ananassae]
gi|190617755|gb|EDV33279.1| GF21532 [Drosophila ananassae]
Length = 333
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 149/288 (51%), Gaps = 29/288 (10%)
Query: 19 DDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS 78
+D +F+L ++ANA RR+M+++VP++AI+ V I N+S++ DE +AHR+GL+PL +
Sbjct: 50 EDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRA 109
Query: 79 E-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSDHSVVPV 135
+ R + R + ++EF L+ KC D D ++ D +H V
Sbjct: 110 DPRLFAYRTEESTETGTEQD-----TLEFELKVKCTRRKDAGKDQSNFDDIYKNHKVYSG 164
Query: 136 DF-VDPAGYDS---TDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
P G + T+ G I+I +LR G EL LR +A KG+G+DHAK+SP AT
Sbjct: 165 HLKWLPKGKQAQIYTETGVGCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATA 224
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESS--PTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
T+ P+I +N + + K +++ S V ID N YV DA + V
Sbjct: 225 TYRLLPQIKLNRE------VSGKDAYLLQSCFSPGVIGIDENEC-AYVKDARYDSCSRNV 277
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ + L + D +IFTVES GA+K + L A++VLK+K
Sbjct: 278 YRYPQINDSVTLARV---RDHYIFTVESVGALKPEVIFLEAVKVLKKK 322
>gi|440635104|gb|ELR05023.1| hypothetical protein GMDG_01594 [Geomyces destructans 20631-21]
Length = 375
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 143/302 (47%), Gaps = 34/302 (11%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F + DAS+ANA RR+++AE+PT+AI+ V + N+SV+ DE +AHRLGL+PL R
Sbjct: 64 ASFSISGIDASVANAFRRILLAEIPTLAIEYVFMNNNTSVIQDEVLAHRLGLVPLKGGRK 123
Query: 82 MSMRFSRDCDACDGDGQC------EFCSVEFHLRAKC--HSDQTLDVTSKDLYSSDHSVV 133
+ F R + + ++ ++ L+ C + D T + + +V
Sbjct: 124 GLLEFMRWFGKANEEEGTEAGEAFDYNTITLKLQIACTRNPDAAPGETDSNKLYINSAVH 183
Query: 134 PVDFV-DPAGYDS---------TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
D V +P G T I+I KLR GQ + L A KGIG DHAK+SP
Sbjct: 184 ASDIVFEPVGRQPEFFSGDDTITVTNPDILIAKLRPGQCIDLDMHAIKGIGADHAKFSPV 243
Query: 184 ATVTFMYEPEIHINEDLMES-------------LSLEEKQSWVESSPTKVFDIDPNTGQV 230
AT ++ P I I + ++ + + E+ S+P ++ +
Sbjct: 244 ATASYRLLPTITILKPILGNDAEKFAKCFPKGVIGFEKVTKEEASTPGSGYEGHAGEKKA 303
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
V D T E ++ E GK L I D FIF++ESTG + +L L +I+ LK
Sbjct: 304 VVKDTMKDTVSRECLRHEEFQGKVKLGRI---RDHFIFSIESTGQWDSDELFLESIKALK 360
Query: 291 QK 292
QK
Sbjct: 361 QK 362
>gi|358391580|gb|EHK40984.1| hypothetical protein TRIATDRAFT_28889 [Trichoderma atroviride IMI
206040]
Length = 377
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 144/299 (48%), Gaps = 41/299 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR++IAE+PT+AI+ V IE N+SV+ DE +AHRLGL+P R
Sbjct: 67 ASFSLIGIDASLANAFRRILIAEIPTLAIEDVFIENNTSVIQDEVLAHRLGLVPFNGGRE 126
Query: 82 MSMRFSRDC-DACDGDGQ----CEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH--SVVP 134
F + G+ Q ++ +V L C +Q T D + H V
Sbjct: 127 GIHNFLKWYKKPAAGEDQYANSFDWNTVRLELNVTCTVNQDAAPTENDPLKAYHHAHVYA 186
Query: 135 VDFV-DPAG----YDSTDQ-----QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
D V P G Y S + I+I KLR Q + L KGIG DH+K+SP A
Sbjct: 187 RDIVFAPTGRQAEYFSGENAIRPVNPDILIAKLRPKQTINLAMHMHKGIGADHSKFSPVA 246
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT---------------GQ 229
T ++ P IHI ++ + + + + + P V ++P T G+
Sbjct: 247 TASYRLLPLIHITRPILGA----DAEKFQKCFPEGVIGLEPVTREDVSKAGSGYEGHLGE 302
Query: 230 VYVV--DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
V V D+ T E ++ AE GK V++ + D FIF++ESTG + +L L ++
Sbjct: 303 VKAVVKDSMKDTVSREALRHAEFEGK---VKLGRRRDHFIFSIESTGQWDSDELFLESV 358
>gi|195386486|ref|XP_002051935.1| GJ24400 [Drosophila virilis]
gi|194148392|gb|EDW64090.1| GJ24400 [Drosophila virilis]
Length = 333
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 23/292 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V +R +++ +F+L ++ANA RR+M++EVP++AI+ V I N+S++ DE +AHR+
Sbjct: 43 VIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHRM 102
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSD 129
GL+PL RA F+ + G E ++E+ L+ KC D + D ++ D +
Sbjct: 103 GLLPL---RADPRLFAYRTEESTEQG-TEQDTLEYELKVKCTRRKDASKDQSNFDDIYKN 158
Query: 130 HSVVPVDF----VDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAKW 180
H V G T+ G I+I +LR G EL LR IA KG+GKDHAK+
Sbjct: 159 HKVYSGHLKWLPKGKQGQIYTENSVGCIHEDILIAQLRPGHELDLRLIAVKGLGKDHAKF 218
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP AT + P+I++ ++ + + + SP V ID N YV DA +
Sbjct: 219 SPVATAYYRLLPQINLTREVTGKDAYLLQSCF---SPG-VIGIDENEC-AYVKDARYDSC 273
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
V + + + D +IF VES GA+K + L A++VLK+K
Sbjct: 274 SRNVYRYPHLADAVTMARV---RDHYIFNVESVGALKPEVIFLEAVKVLKKK 322
>gi|317026864|ref|XP_001399683.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
niger CBS 513.88]
gi|350634564|gb|EHA22926.1| hypothetical protein ASPNIDRAFT_206792 [Aspergillus niger ATCC
1015]
Length = 373
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 147/311 (47%), Gaps = 54/311 (17%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 79
+ F L DAS+ANA RR+++AEVP+IAI+ V + N+SV+ DE +A RLGLIPL + E
Sbjct: 64 SSFSLIGVDASIANAFRRILMAEVPSIAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVE 123
Query: 80 RAMSMRFSRDC--DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSS 128
MR+ + D +G ++ ++ L +C + D D +Y+
Sbjct: 124 GINWMRWFKKPTDDDPNGSSPADYNTIVLRLDVECTKNPNADPEETDPRKLYKNAHVYAK 183
Query: 129 DHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
D + PV D + P D I++ KLR GQ + + KGIG DHA
Sbjct: 184 DITFHPVGRQEQFFAGDDAIQPVNPD-------ILVAKLRPGQAIEMELHCIKGIGADHA 236
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--------- 229
K+SP AT T+ P+I I + + ++ + + + P+ V ++ T +
Sbjct: 237 KFSPVATATYRLLPDIKI----LRPIIGDDAKKFAKCFPSGVIGLEKVTREEAKQKDSGY 292
Query: 230 --------VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
VVD T E ++ E GK V++ D FIF +ES G ++ L
Sbjct: 293 EGHEGELKAVVVDPFKDTVSRECLRHEEFQGK---VKLGRVRDHFIFNIESVGQFESDTL 349
Query: 282 VLNAIEVLKQK 292
L +++VLK K
Sbjct: 350 FLESVKVLKLK 360
>gi|148643488|ref|YP_001274001.1| DNA-directed RNA polymerase subunit D [Methanobrevibacter smithii
ATCC 35061]
gi|261350417|ref|ZP_05975834.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|166229318|sp|A5UN55.1|RPOD_METS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|148552505|gb|ABQ87633.1| DNA-directed RNA polymerase, subunit D, RpoD [Methanobrevibacter
smithii ATCC 35061]
gi|288861200|gb|EFC93498.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 274
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 148/302 (49%), Gaps = 45/302 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++++ DD F +RD + NA+RR + VP IAI+ V I N S + +E +AHR
Sbjct: 2 EIEVKSQTDDEIVFIVRDAEVPFINAIRRCAMVNVPKIAIEDVNIMRNDSAMFNEVLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDG------DGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
LGL PL S + DA +G D E SV F L+ + V SKD
Sbjct: 62 LGLTPLVS----------NMDAIEGLPLPGDDDYEENNSVMFSLK----EEGPKVVYSKD 107
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L SSD + PV YD+ I +VKL+ G++L + A+A+ G GK+HAKW P
Sbjct: 108 LISSDSKIKPV-------YDT------IPLVKLKEGEKLNIEAVAKVGYGKEHAKWMPTT 154
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
+ PEI NED+ + E ++ P V D + ++ ++D E
Sbjct: 155 VCVYKQYPEITFNEDV--GIDYE----CADACPRGVLKSDKRSKEIKILDIEDCAMCKSC 208
Query: 245 ----IKKAEAMGK-PGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA-VRL 298
I+ A++ GK + + E+ FIF +E+ G++ +++L A + L +K D +R
Sbjct: 209 VRASIRNAQSEGKDESYINVGYHENDFIFRIETDGSMPPKEVLLQACDELGEKADKFIRF 268
Query: 299 SE 300
SE
Sbjct: 269 SE 270
>gi|402582559|gb|EJW76504.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 299
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 152/290 (52%), Gaps = 30/290 (10%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RA 81
+F+L +A +ANA+RRV+IAE+PT+AI+ V + N+S++ DE ++HR GL+P+ ++ R
Sbjct: 4 EFDLVGVEAPIANAIRRVLIAELPTLAIEKVYLYQNTSIIPDEVLSHRFGLLPIKADPRL 63
Query: 82 MSMRFSR---------DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD-------- 124
M + DC+ ++ F ++ C + T+ +
Sbjct: 64 FKMPLTPVIGIDESGVDCNEEPAGDPTR--NLIFEIKVTCSRNPNALKTATNPKEIYENA 121
Query: 125 -LYSSDHSVVPV-DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
+YS+ +P+ D Y I++ +LR GQE+ R KG+G+DHAK+SP
Sbjct: 122 FVYSNSFKWIPIGDQSTSLPYPPAMVHDDILVAQLRPGQEIEARCHCLKGLGRDHAKFSP 181
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
AT ++ P+I + + + K S+ E V +ID + G V DA + T
Sbjct: 182 VATASYRLLPQIVLKRKFSGADAQRIKSSFSEG----VIEIDAD-GVAIVKDARSDTCSR 236
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+++ + +E+ +D FIF+VESTGA+K+++LV+ A +V+++K
Sbjct: 237 NILRHEDLA---EYIELSRIKDHFIFSVESTGALKSAELVVEACKVMEEK 283
>gi|195114368|ref|XP_002001739.1| GI17014 [Drosophila mojavensis]
gi|193912314|gb|EDW11181.1| GI17014 [Drosophila mojavensis]
Length = 333
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 148/288 (51%), Gaps = 37/288 (12%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F+L ++ANA RR+M++EVP++AI+ V I N+S++ DE +AHR+GL+PL RA
Sbjct: 54 EFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPL---RAD 110
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSDHSVVPVDF-VD 139
F+ D G E ++E+ L+ KC D + D ++ D +H V
Sbjct: 111 PRLFAYRTDESTDQG-TEQDTLEYELKVKCTRRKDASKDQSNFDDIYRNHKVYSGHLKWL 169
Query: 140 PAGYDS---TDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
P G + ++ G I+I +LR G EL LR IA KGIGKDHAK+SP AT +
Sbjct: 170 PKGKQAQIYSESSVGCIHEDILIAQLRPGHELDLRLIAVKGIGKDHAKFSPVATAYYRLL 229
Query: 192 PEIHINEDLMESLSLEEKQSWVESS--PTKVFDIDPNTGQVYVVDAEAYTYDDEVIK--- 246
P+I++ + + K +++ S V ID N YV DA + V +
Sbjct: 230 PQINLTRE------VRGKDAYLLQSCFSPGVIGIDENEC-AYVKDARYDSCSRNVFRYPH 282
Query: 247 --KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
A MG+ D +IF+VES GA+K + L A+ VLK+K
Sbjct: 283 LADAVTMGR--------VRDHYIFSVESVGALKPEVIFLEAVRVLKKK 322
>gi|444725444|gb|ELW66008.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Tupaia
chinensis]
Length = 346
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 162/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQEDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + VP+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ EV + E + K +V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREVFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCRRFLDELDAVQM 345
>gi|402080745|gb|EJT75890.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 373
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 140/306 (45%), Gaps = 43/306 (14%)
Query: 21 YAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER 80
+A F L DAS+ANA RR+MI+E+P++AI+ V I N+SV+ DE +A RLGL+PL R
Sbjct: 64 HASFSLVGVDASIANAFRRIMISEIPSLAIERVFISNNTSVIQDEVLAQRLGLVPLRGSR 123
Query: 81 A---MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSS 128
MR R +A D +F +V L +C ++ D +Y+
Sbjct: 124 EGLRRFMRVYRKSEAGAFDNSFDFNTVNLRLSVQCSRNEAAAAGETDPAKLYHHANVYAR 183
Query: 129 DHSVVPVDFVDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
D +P A + S D G I++ KLR GQ + L A G G DHAK+SP
Sbjct: 184 DIEFLPEG--QQADWFSGDGVIGPVNPDILLAKLRPGQAIELEMHAHVGYGWDHAKFSPV 241
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY----- 238
T ++ P I I ++ + + + + + P V + T + Y
Sbjct: 242 CTASYRLMPTIDITRPILGA----DAEKFRDCFPDGVIGLRKVTAEDAARAGSGYEGRKG 297
Query: 239 ------------TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
T E ++ AE GK V++ + D FIF+VES G + +L L A+
Sbjct: 298 ELKAVVEDPMRDTVSRECLRHAEFEGK---VKLGRRRDHFIFSVESAGQWGSDELFLAAV 354
Query: 287 EVLKQK 292
LK K
Sbjct: 355 AELKSK 360
>gi|315229895|ref|YP_004070331.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
gi|315182923|gb|ADT83108.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
Length = 258
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 134/292 (45%), Gaps = 54/292 (18%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+K+ E ++D +F L DA+ ANALRRV+I EVPT A+D VE N S L DE IAHR
Sbjct: 2 KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L +IPLT+ RF D D E+ + ++ V S DL S D
Sbjct: 62 LAMIPLTTPYD---RFELDALELD----------EYTVTLSLEAEGPGVVYSGDLKSDDP 108
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV I IVKL GQ+L L A A+ G GKDHAKW P + Y
Sbjct: 109 DVKPV-------------TPNIPIVKLAEGQKLTLNAYAKLGRGKDHAKWQPGFAY-YKY 154
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
EIH+++++ E W + P + VIK A
Sbjct: 155 LTEIHVSKEVPE---------WEKIKKLAKKRKLPTEETEEEL----------VIKTITA 195
Query: 251 MGKPGLVEIY----AKE----DSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
P E Y KE D+F+FTVES G + ++V A+++L +K D
Sbjct: 196 FYLPREFEQYIGTLIKEEIVPDTFVFTVESNGELPVEEIVSIALKILMRKSD 247
>gi|389860853|ref|YP_006363093.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
gi|388525757|gb|AFK50955.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
Length = 282
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 137/279 (49%), Gaps = 22/279 (7%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+ +R + N++RR ++AEVPT+A+D V NSSV DE+IAHRLGLIPLTSE A+
Sbjct: 14 RLLVRGVKLHVLNSIRRAILAEVPTMAVDYVVFMENSSVFYDEYIAHRLGLIPLTSENAL 73
Query: 83 S-MRFSRDCDACDGDGQ-CEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDP 140
+ +C G E C V+ L + + + DL + D V PV
Sbjct: 74 GKYKPPEECREAGEKGVFSEDCFVKLELSGEGTPGGVKTLYAGDLVTGDPDVRPV----- 128
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
Y+ I IV+L Q ++L A AR G G++H KWSPA+ + Y +I+I+
Sbjct: 129 --YEK------IPIVQLLENQRIKLEAYARLGRGREHIKWSPASVASHKYIAKINIDR-- 178
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIY 260
E + VE P +V T +V EA D + + E + + +
Sbjct: 179 -EKCRYPGCKKCVEICPKQVIVEKDGTVEV----EEARLMDCSLCRLCETVCPSEAINVS 233
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
KED +I ESTG++ ++++ A L+ KL+ ++ S
Sbjct: 234 YKEDEYILYFESTGSLTPKRILIEATRALEDKLNELKKS 272
>gi|158293560|ref|XP_314897.4| AGAP008771-PA [Anopheles gambiae str. PEST]
gi|157016767|gb|EAA10097.5| AGAP008771-PA [Anopheles gambiae str. PEST]
Length = 261
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 147/300 (49%), Gaps = 51/300 (17%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
S++R ++ + ++ +F++ ++AN RR+M++EVP++AI+ V I N+S++ D
Sbjct: 1 SFKRKLQIVVVRYDENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQD 60
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTS 122
E +AHRLGLIPL ++ M + A + D ++EF L+ KC + + +VT+
Sbjct: 61 EVLAHRLGLIPLRADPRMF-----EYKANETDPPSALDTLEFELKVKCTRKNKDSTEVTN 115
Query: 123 KDLYSSDHSVVP--VDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKG 172
+ +HS+ + +V P G +T I+I K+R G E ++ A KG
Sbjct: 116 NENMYKNHSIYSGQIKWV-PIGNQATIYTEAAVGPIDDDILISKMRPGHEFDIKLFAVKG 174
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
+GKDHAK+SP ATV++ P+I +N YV
Sbjct: 175 VGKDHAKFSPVATVSYRLLPDIKLNR------------------------------PAYV 204
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
DA + V + + V I + FIFTVES GA+K + + A +VLK+K
Sbjct: 205 KDARYDSCSRNVYRYPQLADA---VTIARVRNHFIFTVESLGALKPEVIFVEAAKVLKKK 261
>gi|384488271|gb|EIE80451.1| hypothetical protein RO3G_05156 [Rhizopus delemar RA 99-880]
Length = 247
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 114/201 (56%), Gaps = 17/201 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KVKI+ L +F+L DAS+ANA RR+MIAEVPT+AI+ V + N+S++ DE +AHR
Sbjct: 44 KVKIQRLSKHSVEFDLIGVDASIANAFRRIMIAEVPTMAIEKVYVMNNTSIIQDEVVAHR 103
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSS 128
LGLIP+ ++ D A DG G + ++ F L+ KC + + + D T
Sbjct: 104 LGLIPILADPN-----EFDYMAEDG-GPTDLNTLVFRLKKKCEFNPEASPDETDPHKKYI 157
Query: 129 DHSVVPVDFV-DPAGYD----STDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ V D + +P G + + R I+I KLR GQE+ + +KG+G++HAK
Sbjct: 158 NSYVYSKDLIWEPKGNQEEKFAANPPRPVHDDIVIAKLRPGQEMEMELHCQKGVGREHAK 217
Query: 180 WSPAATVTFMYEPEIHINEDL 200
WSP AT ++ PEI I E +
Sbjct: 218 WSPVATASYRLLPEITILEPI 238
>gi|393234912|gb|EJD42471.1| hypothetical protein AURDEDRAFT_115078 [Auricularia delicata
TFB-10046 SS5]
Length = 355
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 148/306 (48%), Gaps = 21/306 (6%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+I+ L +F+L DAS+ANA RR++IAEVPT+AI+ + N+SV++DE +A R
Sbjct: 49 KVEIQRLSHRSIEFDLVGVDASIANAFRRILIAEVPTVAIEHAYVWNNTSVIHDEVLAQR 108
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSKD--LYS 127
LGL+PL + A+ M F + D + V R H D+T + KD +YS
Sbjct: 109 LGLVPLDIDPAL-MEFHEGV-STDRNTLVFRLQVTCERRKGAHKDETDPEKLYKDSNVYS 166
Query: 128 SDHSVVP----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+ VP F A + I++ KLR GQE+ + A KG G +HAKWSP
Sbjct: 167 KHLTWVPQGEQATFF--ADHPPRPCNENILLAKLRPGQEIEVELHAIKGRGNEHAKWSPV 224
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT---GQVYVVDAEAYTY 240
T ++ P I I++ + L + P V + N + V D T
Sbjct: 225 GTASYRLLPHITIHKPIPSHLV----DKFAGCFPPGVIGVKTNARGEKEAIVADPRRDTV 280
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
EV++ E G L I D F+F +E+ A +L ++ V ++K+ ++++
Sbjct: 281 SREVLRHPEFEGMVSLSRI---RDFFLFKIETESAYAPERLFTESVAVFREKVKRLKVAA 337
Query: 301 DTVEAD 306
++ D
Sbjct: 338 QQLQVD 343
>gi|328766566|gb|EGF76620.1| hypothetical protein BATDEDRAFT_21078 [Batrachochytrium
dendrobatidis JAM81]
Length = 342
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 149/307 (48%), Gaps = 36/307 (11%)
Query: 20 DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE 79
D +F+L DAS++NA RR++I EV T+AI+ V I N+ V++DE +A RLGLIP+ S+
Sbjct: 50 DSMEFDLIGLDASISNAFRRILIGEVATMAIENVYIMNNTGVMHDEVLAQRLGLIPINSD 109
Query: 80 -RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC----HSDQT----------LDVTSKD 124
R R D D + ++ F L KC H+ + DV SK
Sbjct: 110 PRLFDFREGSD------DPPTDLNTLVFRLNIKCTRNPHASASEINPSNKYIDSDVLSKH 163
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L F D D I+I KLR GQE+ +KGIGK+HAKWSP A
Sbjct: 164 LIWEPQGDQVEKFKDSPIRPYYDD---ILITKLRPGQEIEAELHCQKGIGKEHAKWSPVA 220
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
T ++ P+I I + + + + K + E + K+ + G + + T EV
Sbjct: 221 TASYRLLPDIQILKPITGKDAEKFKNCFPEGT-VKIVQKN-GVGHAEIANPRKDTASREV 278
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAI-------KASQLVLNAIEVLKQKLDAVR 297
++ AE + K L + D FIF++ESTGA+ +ASQ+++ +KQ L A+
Sbjct: 279 LRHAEFLDKVRLTRV---RDHFIFSIESTGALPPQLLFQEASQILIEKCLNIKQALIAMG 335
Query: 298 LSEDTVE 304
L E
Sbjct: 336 LPPTASE 342
>gi|351707955|gb|EHB10874.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Heterocephalus glaber]
Length = 346
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 162/319 (50%), Gaps = 36/319 (11%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEFRNEGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
SD + +Y+ + VP+ V P G I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGM-IRPVHNDILIAQLRPGQEIDLLMH 213
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G
Sbjct: 214 CVKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEVAEELSCCFSPGVIEVQEVQG 269
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V + T+ E+ + E + K V++ D +IF+VESTG + LV AI
Sbjct: 270 KKVARVANPRLDTFSREIFRH-EKLKKA--VQLTRVRDHYIFSVESTGVLPPDVLVSEAI 326
Query: 287 EVLKQK-------LDAVRL 298
+VL K LDAV++
Sbjct: 327 KVLMGKCQRFLDELDAVQM 345
>gi|297678210|ref|XP_002816974.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pongo abelii]
Length = 346
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 162/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHNDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ E+ + E + K +V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREIFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCRRFLDELDAVQM 345
>gi|336477128|ref|YP_004616269.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
gi|335930509|gb|AEH61050.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
Length = 264
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 133/282 (47%), Gaps = 32/282 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I EL + A F L D + AN +RR M+A+VPT+AID V + N+SVL DE + R
Sbjct: 4 KIDILELSERTASFVLSDASVAFANGIRRAMLADVPTLAIDEVNVYNNTSVLYDEQLGLR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPLT+ M + D C+ + C C + L + V S D S+D
Sbjct: 64 LALIPLTAN--MDDYIPK--DECNCEDVCPACELSLTLSV----EGPKMVYSGDFVSADP 115
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V P D I I+ L+ GQ+L + A+A G GK+HAKW +
Sbjct: 116 EVRPAD-------------SNIPIIDLKEGQKLFIEALAHAGYGKEHAKWQAGVGCGYKN 162
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P + + ++ + +E P ++ + P ++ D T AEA
Sbjct: 163 YPIVSFT-------NCDQCGTCIEECPKEIIKMGPAGAEISSEDLLKCTLCKTC---AEA 212
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
G V + E SFIF +ES G+ + +L++NA +V+++K
Sbjct: 213 CGI-NAVSVNQSESSFIFNMESDGSYTSEELIINAGKVIRKK 253
>gi|408400667|gb|EKJ79744.1| hypothetical protein FPSE_00024 [Fusarium pseudograminearum CS3096]
Length = 381
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 144/306 (47%), Gaps = 55/306 (17%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
+ F L DAS+ANA RR++++E+PT+AI+ V IE N+SV+ DE +AHRLGLIP R
Sbjct: 71 SSFSLVGIDASLANAFRRILLSEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFKGGRE 130
Query: 82 ---MSMRFSRDCDACDGD--GQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYS 127
+++ + +A D G ++ +V L C ++ D +Y+
Sbjct: 131 GLHNFLKWHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEEASPAENDPLKAYHNAHVYA 190
Query: 128 SDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
D VP + + P D I+I KLR Q + L KGIG DH
Sbjct: 191 RDIVFVPTGRQAEYFSGENAIAPTNPD-------ILIAKLRPRQTINLAMHMHKGIGSDH 243
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID-------PNTGQV 230
AK+SP AT ++ P I I + +M + + + + + P V ++ TG
Sbjct: 244 AKFSPVATASYRLLPTITITQPIMGA----DAEKFAKCFPKGVIGLEKVTAEDAAKTGSG 299
Query: 231 Y----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQ 280
Y VVDA T E ++ E GK V++ + D FIF++ESTG + +
Sbjct: 300 YEGHKGETKAVVVDAMKDTVSREALRHEEFQGK---VKLGRRRDHFIFSIESTGQWDSDE 356
Query: 281 LVLNAI 286
L L ++
Sbjct: 357 LFLESV 362
>gi|431838337|gb|ELK00269.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pteropus
alecto]
Length = 346
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 162/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKSFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + VP+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVHEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ EV + E + K +V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREVFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCQRFLDELDAVQM 345
>gi|341582027|ref|YP_004762519.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
gi|340809685|gb|AEK72842.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
Length = 260
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 139/289 (48%), Gaps = 46/289 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK +I E ++D KF + D ANALRR ++A+VPT A+D VE N S L DE IAH
Sbjct: 3 PKFQILEKREDSIKFIVEGVDVPFANALRRTILADVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
R+G+IPLT+ RFS D D E+ + ++ V S DL SSD
Sbjct: 63 RVGMIPLTTPHE---RFSLDSLELD----------EYTVTLSLEAEGPGMVYSGDLKSSD 109
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V P + I IVKL GQ L A A+ G GKDHAKW P V +
Sbjct: 110 EGVKPAN-------------PNIPIVKLAEGQRLTFNAYAKLGRGKDHAKWQPGF-VYYK 155
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY----TYDDEVI 245
Y IH+++++ + L+ E + + + G++ + +A+ +D V
Sbjct: 156 YLTRIHVSKEVPDWKELK------ELAERRGLPAEETDGELVITTIKAFYLPRKFDAYVG 209
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+K P ++F+FTVE+ G + ++V A+++L +K D
Sbjct: 210 EKIWEETVP---------NAFVFTVETNGELPVEEIVTIALKILMRKSD 249
>gi|440293650|gb|ELP86743.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Entamoeba invadens IP1]
Length = 289
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 151/279 (54%), Gaps = 35/279 (12%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+L + D S+AN+LRR+M++EVPT+AI++V +EVN+S + DE +AHRLGLIP+ ++
Sbjct: 19 FDLTNVDVSVANSLRRIMLSEVPTMAIEMVVMEVNTSCIPDEMLAHRLGLIPIYAD-PRK 77
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS--KDLYSSDHSVVPVDFVDPA 141
+F+ + + E ++ FH+ + T D T+ K++YSSD +P
Sbjct: 78 FQFAPNRAFLEPT---EENTLVFHMDV---INNTKDKTAVHKNVYSSD------IIWEPQ 125
Query: 142 GYDSTDQQR--------GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPE 193
G T Q+ I+I +L +GQ+++ + KG+G+DHAK+SP T + P+
Sbjct: 126 GDQETTFQKDPIRVVLGDILIAELAQGQQIKCKLYCCKGLGQDHAKFSPVCTAAYRMMPK 185
Query: 194 IHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGK 253
I + + ++ E K E P V+DI+ N ++ V + E I+ +
Sbjct: 186 IEVTA--VGKMAKEIK----ECCPLNVYDIEDN--ELVVKNPRNCKMCRECIRDQ----R 233
Query: 254 PGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
V++ ++ FIFTVES G +A ++ A+ VLK K
Sbjct: 234 QEFVKLGREDSHFIFTVESVGIYQAKEIFEEALSVLKGK 272
>gi|46105474|ref|XP_380541.1| hypothetical protein FG00365.1 [Gibberella zeae PH-1]
Length = 381
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 145/306 (47%), Gaps = 55/306 (17%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSER- 80
+ F L DAS+ANA RR++++E+PT+A++ V IE N+SV+ DE +AHRLGLIP R
Sbjct: 71 SSFSLVGIDASLANAFRRILLSEIPTLAVENVYIENNTSVIQDEVLAHRLGLIPFKGGRE 130
Query: 81 --AMSMRFSRDCDACDGD--GQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYS 127
+++ + +A D G ++ +V L C ++ T D +Y+
Sbjct: 131 GLHNFLKWHKKPEAGDDPYAGCFDWNTVRLELNVTCTVNEDASPTENDPLKAYHNAHVYA 190
Query: 128 SDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
D VP + + P D I+I KLR Q + L KGIG DH
Sbjct: 191 RDIVFVPTGRQAEYFSGENAIAPTNPD-------ILIAKLRPRQTINLAMHMHKGIGSDH 243
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID-------PNTGQV 230
AK+SP AT ++ P I I + ++ + + + + + P V ++ TG
Sbjct: 244 AKFSPVATASYRLLPTITITQPILGA----DAEKFAKCFPKGVIGLEKVTAEDAAKTGSG 299
Query: 231 Y----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQ 280
Y VVDA T E ++ E GK V++ + D FIF++ESTG + +
Sbjct: 300 YEGHKGETKAVVVDAMKDTVSREALRHEEFQGK---VKLGRRRDHFIFSIESTGQWDSDE 356
Query: 281 LVLNAI 286
L L ++
Sbjct: 357 LFLESV 362
>gi|410959240|ref|XP_003986220.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Felis catus]
Length = 346
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 166/318 (52%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + L ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDCFEKNFRVDVVHLDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + VP+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I + E + + E ++ + SP V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELRRCF---SP-GVIEVQEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ EV + E + K +V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREVFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPEVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCQRFLDELDAVQM 345
>gi|348576230|ref|XP_003473890.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cavia porcellus]
Length = 346
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 161/319 (50%), Gaps = 36/319 (11%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEFRNEGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
SD + +Y+ + VP+ V P G I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHD-DILIAQLRPGQEIDLLMH 213
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G
Sbjct: 214 CVKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSYCFSPGVIEVQEVQG 269
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V + T+ EV + E + K V + D +IF+VESTG + LV AI
Sbjct: 270 KKVARVANPRLDTFSREVFRH-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAI 326
Query: 287 EVLKQK-------LDAVRL 298
+VL K LDAV++
Sbjct: 327 KVLMGKCQRFLDELDAVQM 345
>gi|355561732|gb|EHH18364.1| hypothetical protein EGK_14941 [Macaca mulatta]
gi|355763424|gb|EHH62170.1| hypothetical protein EGM_20381 [Macaca fascicularis]
gi|380818186|gb|AFE80967.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
gi|384950476|gb|AFI38843.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
Length = 346
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D D + D ++ F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEDGTEID------TLRFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ E+ + E + K +V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREIFRH-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCRRFLDELDAVQM 345
>gi|332234165|ref|XP_003266281.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Nomascus leucogenys]
Length = 346
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 162/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQERFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ E+ + E + K +V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREIFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCRRFLDELDAVQM 345
>gi|339521959|gb|AEJ84144.1| Polr1c protein [Capra hircus]
Length = 346
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 163/319 (51%), Gaps = 36/319 (11%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ D+++ANA RR+++AEVP +A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDSAIANAFRRILLAEVPAMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D +G E +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLR 166
SD + +Y+ + VP+ F + A D I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHRVYTRHMTWVPLGSQAALFPEGAIRPVHDD---ILIAQLRPGQEIDLL 211
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
KGIGKDHAK+SP AT ++ P+I + E + E + EE +V +I
Sbjct: 212 MHCVKGIGKDHAKFSPVATASYRLLPDITLLEPV-EGGAGEELSRCFSPGVIEVQEIQ-G 269
Query: 227 TGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
V + T+ EV + E + K +V + D +IF+VESTG + LV+ AI
Sbjct: 270 KKVASVANPRLDTFSREVFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVIEAI 326
Query: 287 EVLKQK-------LDAVRL 298
+VL K LDAV++
Sbjct: 327 KVLMGKCQRFLDELDAVQM 345
>gi|321465930|gb|EFX76928.1| hypothetical protein DAPPUDRAFT_213644 [Daphnia pulex]
Length = 353
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 155/309 (50%), Gaps = 31/309 (10%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D S+++F K + I +++ +F+L D ++ NA RR++++++PT+A D V + N
Sbjct: 46 DSWSFEKFKKRLKINIVRMENMEIEFDLIGVDPAIPNAFRRILLSDIPTMAFDKVFMFNN 105
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSD 115
+S++ DE +AHRLGLIPL ++ R R A D D ++EF L+ KC +
Sbjct: 106 TSIIQDEVLAHRLGLIPLKADPRLFEFR------AEDDDAGTPEDTLEFELKVKCSWNPQ 159
Query: 116 QTLDVTSKDLYSSDHSVV-------PV----DFVDPAGYDSTDQQRGIIIVKLRRGQELR 164
+T D T+ + D V+ P+ D P D + I+I K+R G EL
Sbjct: 160 RTKDHTNPEHLYRDFRVLTSHLKWMPLGGQKDIFTPDAVGPVDDK--ILIAKMRPGHELD 217
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFD-I 223
++ A KG G++HAK+SP AT + P++ L++ + E Q + V D +
Sbjct: 218 IKLHAMKGTGREHAKFSPVATAFYRLLPQV----KLLKEVEGEAAQRLQKCFSPGVIDLV 273
Query: 224 DPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
D +V V+ Y + + E + K V++ D FIF +ESTGA+ L
Sbjct: 274 DSGEKKVAKVNDARYDICSRNVFRHEDL-KEDTVKLTRARDHFIFYIESTGALAPEVLFT 332
Query: 284 NAIEVLKQK 292
A ++L QK
Sbjct: 333 EAAKILSQK 341
>gi|167387776|ref|XP_001738304.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Entamoeba
dispar SAW760]
gi|165898594|gb|EDR25427.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Entamoeba dispar SAW760]
Length = 291
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 148/289 (51%), Gaps = 30/289 (10%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+KI E + +F+ D S+AN LRR+MIAEVPT+AI++V +E NSS + DE + HRL
Sbjct: 8 IKISE-SPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHRL 66
Query: 72 GLIPLTSERAMSMRFSRD---CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
GLIP+ ++ +F +D D + D ++ F L C D + + +YSS
Sbjct: 67 GLIPILAD-PRKFKFPKDRHFTDPTEED------TIVFTLDVTCTLDSAKNPVNNKVYSS 119
Query: 129 DHSVVP-----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
D P F D D I+I +L+ Q ++ + KGIG+DHAK+SP
Sbjct: 120 DLIWEPQGEQETTFADCPIKPVFD---DILIAELQPHQHIKCKLFCCKGIGQDHAKFSPV 176
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
T+ P+I + + + +S E K P VFDI+ G++ V + E
Sbjct: 177 CPATYRLMPKITVIKQ-NKKMSKEIKN----CCPLNVFDIE--DGELIVKNPRNCKMCRE 229
Query: 244 VIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
I++ + +++ +E+ ++F+VESTG A ++ A++++K K
Sbjct: 230 CIREERS----EYIKLGREENHYLFSVESTGIYPAKEIFSEAVKIMKSK 274
>gi|296198261|ref|XP_002746623.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Callithrix jacchus]
Length = 346
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 161/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DAS+ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQERFEKNFRVDVVHMDENSLEFDMVGIDASIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYMNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVVEVQEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ E+ + E + K V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREIFRN-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCRRFLDELDAVQM 345
>gi|390960760|ref|YP_006424594.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
gi|390519068|gb|AFL94800.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
Length = 260
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 143/289 (49%), Gaps = 46/289 (15%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
PK +I E ++D KF + D ANALRR ++AEVPT A+D VE N S L DE IAH
Sbjct: 3 PKFQILEKREDSIKFIVEGIDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RL +IPLT+ + RFS DA + D S+E ++ V S DL SSD
Sbjct: 63 RLAMIPLTTP---AERFS--LDALELDDYTVTLSLE--------AEGPGMVYSGDLRSSD 109
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ + PA D I IVKL GQ L A AR G GKDHAKW P V +
Sbjct: 110 EA------IKPANPD-------IPIVKLAEGQRLTFNAYARLGRGKDHAKWQP-GFVYYK 155
Query: 190 YEPEIHINE---DLMESLSLEEKQSW-VESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
Y IH+++ D E L E++ VE + ++ T + + + + Y+ + I
Sbjct: 156 YLTRIHVSKEVPDWEELKELAERRGLPVEETGEELII---TTIKAFYLPRKFEGYEGDKI 212
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
++ G +F+FTVE+ G + ++V A+++L +K D
Sbjct: 213 REEVVPG------------AFVFTVETNGELPVEEIVATALKILMRKSD 249
>gi|115384348|ref|XP_001208721.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
gi|114196413|gb|EAU38113.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
Length = 374
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 149/312 (47%), Gaps = 55/312 (17%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 79
A F L DA++ANA RR+++AEVPT+AI+ V + N+SV+ DE +A RLGLIPL + E
Sbjct: 64 ASFSLVGLDAAIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVE 123
Query: 80 RAMSMRFSR---DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYS 127
MR+ + D D G ++ ++ L +C + D +Y+
Sbjct: 124 GINWMRWFKKPTDDDPESGSTPSDYNTIVLRLDVECTKNPNAAKDEDDPRKLYRNAHVYA 183
Query: 128 SDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
D + PV D + P D I+I KLR GQ++ + KGIG DH
Sbjct: 184 KDITFHPVGRQEQFFTGDDAIQPVNPD-------ILIAKLRPGQKISMELHCIKGIGADH 236
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT---------- 227
AK+SP T ++ P+I I ++ ++ + + + P V ++P T
Sbjct: 237 AKFSPVCTASYRLLPDIKIERPIIG----DDAKKFAKCFPRGVIGLEPVTREEAAKKGSG 292
Query: 228 -----GQVYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQ 280
G++ V +A+ T E ++ E GK V++ D FIF VES+G +
Sbjct: 293 YEGHEGEMKAVVRDAFNDTVSRECLRHEEFQGK---VKLGRVRDHFIFNVESSGQFNSDV 349
Query: 281 LVLNAIEVLKQK 292
L L +++VLK K
Sbjct: 350 LFLESVKVLKLK 361
>gi|57641438|ref|YP_183916.1| DNA-directed RNA polymerase subunit D [Thermococcus kodakarensis
KOD1]
gi|73917880|sp|Q5JJF4.1|RPOD_PYRKO RecName: Full=DNA-directed RNA polymerase subunit D
gi|57159762|dbj|BAD85692.1| DNA-directed RNA polymerase, subunit D [Thermococcus kodakarensis
KOD1]
Length = 259
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 139/282 (49%), Gaps = 38/282 (13%)
Query: 13 KIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
KI E + D KF + D ANALRR +++EVPT A+D VE N S L DE IAHRL
Sbjct: 5 KILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLA 64
Query: 73 LIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSV 132
+IPLT+ RFS DA + D S+E ++ V S DL SSD V
Sbjct: 65 MIPLTTPHE---RFS--LDALELDDYTVTLSLE--------AEGPGMVYSGDLKSSDGDV 111
Query: 133 VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 192
P + I IVKL GQ L A AR G GKDHAKW P V + Y
Sbjct: 112 KPAN-------------PNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQP-GFVYYKYLT 157
Query: 193 EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMG 252
+IH+++D+ + L+ E + + ++ + ++ + +A+ K E MG
Sbjct: 158 KIHVSKDVPDWEELK------ELAERRGLPVEESDEEIVITTIKAFYLPR---KFEEHMG 208
Query: 253 KPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
K EI SF+FTVE+ G + ++V A+++L +K D
Sbjct: 209 KGIREEIVP--GSFVFTVETNGELPVEEIVSIALKILMRKSD 248
>gi|42560246|ref|NP_976035.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Homo sapiens]
gi|332824144|ref|XP_001136605.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Pan troglodytes]
gi|397526795|ref|XP_003833302.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pan paniscus]
gi|426353284|ref|XP_004044127.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Gorilla gorilla gorilla]
gi|3914807|sp|O15160.1|RPAC1_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPA39;
AltName: Full=RPC40
gi|2266929|gb|AAC14354.1| RNA polymerase I subunit hRPA39 [Homo sapiens]
gi|14250788|gb|AAH08863.1| Polymerase (RNA) I polypeptide C, 30kDa [Homo sapiens]
gi|119624610|gb|EAX04205.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_b [Homo
sapiens]
gi|261858766|dbj|BAI45905.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|312152392|gb|ADQ32708.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|410212776|gb|JAA03607.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410248096|gb|JAA12015.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410296802|gb|JAA27001.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410337835|gb|JAA37864.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
Length = 346
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 162/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ E+ + E + K +V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREIFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCRRFLDELDAVQM 345
>gi|403222412|dbj|BAM40544.1| DNA-directed RNA polymerases I and III subunit [Theileria
orientalis strain Shintoku]
Length = 305
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 141/289 (48%), Gaps = 28/289 (9%)
Query: 2 DGASYQRFPKV--KIRELKDDYAK-------FELRDTDASMANALRRVMIAEVPTIAIDL 52
D + + PK+ K++ L+ ++ K E+ D S ANALRR++++EVPT+A++
Sbjct: 18 DSSDSSKDPKIIEKVKSLRVNFLKKTESHSIVEIEGLDVSFANALRRILLSEVPTLAVET 77
Query: 53 VEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
V+I N+ V+ DE +AHRLGLIP + F ++C+ + SV F L+ K
Sbjct: 78 VQIYQNTGVIQDELLAHRLGLIPFNVNPDL-FTF-KNCEEINDKN-----SVCFKLKVKY 130
Query: 113 HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQR---GIIIVKLRRGQELRLRAIA 169
++ +YSS VP+ A + + + I+I KL GQE+ L
Sbjct: 131 DRNEPNSGNYLPVYSSFLKWVPLSSNQEATFKNNPPKPVHDNILITKLAPGQEIDLNVYL 190
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KG GK HAKWSP +T + + P I IN+ LS EK+ P VF I +
Sbjct: 191 EKGTGKVHAKWSPVSTAFYKFMPSIKIND--TPKLSDSEKRDLATICPMDVFSIK--NSE 246
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKA 278
+ V + T + ++ P V I + IF++ESTG+I +
Sbjct: 247 ISVENPLNCTSCRKCLETY-----PKHVTISKLVNHIIFSIESTGSIPS 290
>gi|395832416|ref|XP_003789267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Otolemur garnettii]
Length = 346
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 156/305 (51%), Gaps = 27/305 (8%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C +
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 121 TSKD---LYSSDHSVVPVDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIA 169
S D LY + P G + G I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMMWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L++ + E + + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLKPVEGEAAEELSQCFSPGVIEVQEIQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
VV+ T+ E+ + E + K +V++ D +IF+VESTG + LV AI+
Sbjct: 271 KVARVVNPRLDTFSREIFRH-EKLKK--IVQLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK 292
+L K
Sbjct: 328 ILMGK 332
>gi|297290919|ref|XP_001096103.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1,
partial [Macaca mulatta]
Length = 298
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 158/309 (51%), Gaps = 35/309 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHR
Sbjct: 3 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 62
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC---------HSDQTLDVT 121
LGLIP+ ++ + ++D D + D ++ F L+ +C SD
Sbjct: 63 LGLIPIHADPRLFEYRNQDEDGTEID------TLRFRLQVRCTRNPHAAKDSSDPNELYV 116
Query: 122 SKDLYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ +Y+ + +P+ + P G I+I +LR GQE+ L KGIGKDHA
Sbjct: 117 NHKVYTRHMTWIPLGNQADLFPEGTIRPVHD-DILIAQLRPGQEIDLLMHCVKGIGKDHA 175
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAE 236
K+SP AT ++ P+I L+E + E + V ++ G+ V +
Sbjct: 176 KFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPR 231
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK---- 292
T+ E+ + E + K +V + D +IF+VESTG + LV AI+VL K
Sbjct: 232 LDTFSREIFRH-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRF 288
Query: 293 ---LDAVRL 298
LDAV++
Sbjct: 289 LDELDAVQM 297
>gi|14198113|gb|AAH08118.1| POLR1C protein, partial [Homo sapiens]
Length = 338
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 162/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 33 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 92
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 93 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 146
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + T + I+I +LR GQE+ L
Sbjct: 147 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 206
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 207 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGK 262
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ E+ + E + K +V + D +IF+VESTG + LV AI+
Sbjct: 263 KVARVANPRLDTFSREIFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 319
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 320 VLMGKCRRFLDELDAVQM 337
>gi|25155095|ref|NP_504166.2| Protein RPAC-40 [Caenorhabditis elegans]
gi|351060931|emb|CCD68663.1| Protein RPAC-40 [Caenorhabditis elegans]
Length = 366
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 41/303 (13%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F++ +A +ANALRRV+IAEVPT+A++ + + N+SV+ DE + HRLGL+PL +
Sbjct: 69 EFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVD-PR 127
Query: 83 SMRFSR-----------DCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD------ 124
+F + DCD +GD F + C ++ T+ D
Sbjct: 128 GFQFPKEKVVGINEKGVDCDEEPEGDPAKNLI---FKINVSCTKNRNAVPTATDPKQLYH 184
Query: 125 ---LYSSDHSVVPV-----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
+YS VP+ F + A I++ KLR GQE+ A KGIG+D
Sbjct: 185 NSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDD--ILVAKLRPGQEIEASCHAVKGIGRD 242
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVD 234
HAK+SP AT ++ P I +N ++ + K + E V I+ + V D
Sbjct: 243 HAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEG----VIAIEKKGAKRIAVVKD 298
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
A T V + E + K +V++ + FIF+VESTGA+K+S+LV+ A +V++ K
Sbjct: 299 ARKDTCSRNVFRH-EDLSK--VVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCR 355
Query: 295 AVR 297
++R
Sbjct: 356 SLR 358
>gi|392593120|gb|EIW82446.1| hypothetical protein CONPUDRAFT_136940 [Coniophora puteana
RWD-64-598 SS2]
Length = 358
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 149/311 (47%), Gaps = 45/311 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
V++ L + F+L DAS+ANA RR++IAEVPTIAI+ V + N+SV+ DE +AHR
Sbjct: 48 NVQVNRLSNRSIDFDLVGVDASIANAFRRILIAEVPTIAIEQVYVWNNTSVIVDEVLAHR 107
Query: 71 LGLIPLTSERA-MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL--DVTSKDLYS 127
LGL+PL + + + + S A D + ++ F L C ++ DVT +
Sbjct: 108 LGLVPLNVDPSFLEFKESPSIQATDRN------TLVFKLEVTCTRNRNTPKDVTDPKMLY 161
Query: 128 SDHSVVPVDF-VDPAGYD--------STDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
++ V+ D P G T I++ KLR GQE+ + A KG+GKDHA
Sbjct: 162 NNSEVLSSDLRWVPQGEQEEIFAANIPTPSNPNIVLAKLRPGQEVNMELHAVKGVGKDHA 221
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
K+ AT ++ P + +N + + + + + V +DP T +V V
Sbjct: 222 KFCAVATASYRLLPLVVLNPE--KPIPPSSAHKFQKCFSPGVIRVDPVTKEVSV------ 273
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAK------------EDSFIFTVESTGAIKASQLVLNAI 286
DE + E+M + E+Y D FIF VES G +L+ +I
Sbjct: 274 ---DEKNLRNESMSR----EVYRHVEFEDCCQLARVRDHFIFNVESEGFYPPERLLPESI 326
Query: 287 EVLKQKLDAVR 297
+V++ K+ ++
Sbjct: 327 KVMRSKIATIK 337
>gi|449299411|gb|EMC95425.1| hypothetical protein BAUCODRAFT_541052 [Baudoinia compniacensis
UAMH 10762]
Length = 388
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 155/322 (48%), Gaps = 65/322 (20%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR+++AE+PT+AI+ V I N+S++ DE +AHRLGLIPLT +
Sbjct: 66 AVFSLVGVDASIANAFRRILLAEIPTLAIEDVFIFNNTSIIQDEVLAHRLGLIPLTGGKK 125
Query: 82 M--SMR----------FSRDCDACDGDGQCEFCSVEFH------LRAKCH---------- 113
+R F+ D DG+ + H L+ +C
Sbjct: 126 GLEWLRWYKKPPPKDDFAAQALHDDDDGEPGVSTPNDHNTIVVTLKVECRWATEQDDGRD 185
Query: 114 ---------SDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG----------III 154
+D + ++Y+ H +V +P G + T G I+I
Sbjct: 186 GRQLAQEGETDPEVRYVGSNVYA--HQLV----FEPQG-EQTQHFSGENAIRPVNPDILI 238
Query: 155 VKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVE 214
KLR GQ++ LR KGIG DHAK+SP AT ++ P+I+I + ++ + E + +
Sbjct: 239 AKLRPGQKIDLRCHCYKGIGMDHAKFSPVATASYRLLPDINIIKPILGA----EAKKFQR 294
Query: 215 SSPTKVFDI--DPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTV 270
P V D+ D TG+ V D T E ++ E GK L I D FIF++
Sbjct: 295 CFPRGVIDLKHDDETGESKAVVADPMKDTVSRECLRHDEFKGKVKLGRI---RDHFIFSI 351
Query: 271 ESTGAIKASQLVLNAIEVLKQK 292
ESTG ++ +L L+++ +LK K
Sbjct: 352 ESTGQFESDELFLDSVRLLKAK 373
>gi|56605738|ref|NP_001008331.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Rattus
norvegicus]
gi|55778316|gb|AAH86597.1| Polymerase (RNA) I polypeptide C [Rattus norvegicus]
gi|149069363|gb|EDM18804.1| RNA polymerase 1-1, isoform CRA_a [Rattus norvegicus]
Length = 346
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 160/320 (50%), Gaps = 29/320 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + + +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDESTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R + + + D +++F L+ +C + +
Sbjct: 101 VQDEILAHRLGLIPILADPRLFEYRNPGEEEGTEID------TLQFRLQVRCTRNPSAAK 154
Query: 121 TSKD---------LYSSDHSVVPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAI 168
S D +Y+ + VP+ V P G I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEG-TVRPVHDDILIAQLRPGQEIDLMMH 213
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ P+I L+E + E + + V + G
Sbjct: 214 CVKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSQCFSPGVIAVQEVQG 269
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V +A T+ E+ + E + K V + D +IF+VESTG + LV AI
Sbjct: 270 KKVARVANARLDTFSREIFRH-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAI 326
Query: 287 EVLKQKLDAVRLSEDTVEAD 306
++L K D VE D
Sbjct: 327 KILMGKCRRFLDELDAVEMD 346
>gi|195035209|ref|XP_001989070.1| GH11517 [Drosophila grimshawi]
gi|193905070|gb|EDW03937.1| GH11517 [Drosophila grimshawi]
Length = 333
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 150/295 (50%), Gaps = 23/295 (7%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V +R +++ +F+L ++ANA RR+M++EVP++AI+ V I N+S++ DE +AHR+
Sbjct: 43 VIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHRM 102
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSD 129
GL+PL RA F+ + G E ++E+ L+ KC D T + ++ D +
Sbjct: 103 GLLPL---RADPRLFAYRSEESTEQGS-EQDTLEYELKVKCTRRKDATKEQSNFDDIYKN 158
Query: 130 HSVVPVDF-VDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAKW 180
H V P G I+I +LR G EL LR IA KGIGKDHAK+
Sbjct: 159 HKVYSGHLKWLPKGKQGQIYSESSVNCIHDDILIAQLRPGHELDLRLIAVKGIGKDHAKF 218
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SP AT + P+I + ++ + + + SP V ID N YV DA +
Sbjct: 219 SPVATAFYRLLPQITLTREVSGKDAYLLQNCF---SPG-VIGIDENEC-AYVKDARYDSC 273
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
V + + + + D +IF+VES GA+K + L A++VLK+K A
Sbjct: 274 SRNVYRYPQLADAVIMARV---RDHYIFSVESVGALKPEVIFLEAVKVLKKKCRA 325
>gi|449283222|gb|EMC89903.1| DNA-directed RNA polymerases I and III subunit RPAC1, partial
[Columba livia]
Length = 323
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 145/286 (50%), Gaps = 31/286 (10%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RA 81
+F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R
Sbjct: 39 EFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRL 98
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSSDHSV 132
R D + + D +++F L+ KC + S D +YS +
Sbjct: 99 FEYRNQGDEEGTEID------TLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTW 152
Query: 133 VPV----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
VP+ D A + I+I LR GQE+ + KGIGKDHAK+SP AT ++
Sbjct: 153 VPLGNQTDLFPDADFRPVHDD--ILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASY 210
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAEAYTYDDEVIK 246
P+I L++ + E ++ + V +I G+ V +A T+ EV +
Sbjct: 211 RLLPDI----TLLQPIEDEAAETLQKCFSPGVIEIQKIKGKKVARVANARLDTFSREVFR 266
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
LV + + +IF+VESTG + LV AI++L K
Sbjct: 267 HENLK---NLVRLARVRNHYIFSVESTGILPPDVLVSEAIKILMGK 309
>gi|254574330|ref|XP_002494274.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|238034073|emb|CAY72095.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|328353904|emb|CCA40301.1| DNA-directed RNA Polymerase III subunit C5 [Komagataella pastoris
CBS 7435]
Length = 335
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 32/303 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++K+ D F+L D S+ANA RR+MI+EVP+++++ V I NSSV+ DE +A R
Sbjct: 41 EIKVGYRTDRTLNFDLIHIDTSIANAFRRIMISEVPSVSVEHVYINNNSSVIQDEVLASR 100
Query: 71 LGLIPLT--------SERAM--SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+GL+PL +R + S RF+ + C+ H AK ++D
Sbjct: 101 IGLVPLQIDPDRLSWVDRGVEESERFTDENTVVISLNVA--CTKNPH-PAKNNNDPENLY 157
Query: 121 TSKDLYSSDHSVVPV-----DFVD-PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIG 174
+ +YS D P F D P D I+I KLR GQE+ L+A G+G
Sbjct: 158 RNSIVYSRDLKFEPQGRQVETFADSPVVAADPD----IVIAKLRPGQEISLKAHCILGLG 213
Query: 175 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVD 234
DHAK+SP T ++ P I+I + ++ ++ + + + P V I+ GQ V D
Sbjct: 214 SDHAKFSPVCTASYRLLPVINI----TQPITGKDAEKFQKCFPKGVIAIE--NGQAVVKD 267
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
A T E ++ E GK V++ + D FIF VESTG + ++ ++ +LK K +
Sbjct: 268 ARRDTVSRECLRHPEFEGK---VKLARQRDHFIFNVESTGCMPPEEIFFKSVRILKNKAE 324
Query: 295 AVR 297
++
Sbjct: 325 YLK 327
>gi|400602680|gb|EJP70282.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 384
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 142/311 (45%), Gaps = 50/311 (16%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR+MIAE+PT+AI+ V IE N+SV+ DE +AHRLGLIP R
Sbjct: 71 ASFSLVGLDASLANAFRRIMIAEIPTLAIENVFIENNTSVIQDEVLAHRLGLIPFKGGRE 130
Query: 82 MSMRFSR---------DCDACDGDGQCEFCSVEFHLRAKC---------HSDQTLDVTSK 123
+ F + D D D G +F +V L C +D T
Sbjct: 131 GLLDFLKWHKKPTDGDDDDNDDSAGGFDFDTVRLELNVTCTANADAAPGETDPTKAYHHA 190
Query: 124 DLYSSDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGI 173
+Y+ D P+ D + P D I+I K+R Q + L KGI
Sbjct: 191 HVYARDIVFSPMGEQERYFSGADAIAPVNPD-------ILIAKMRPKQTINLSMHMHKGI 243
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLM----ESLSLEEKQSWVESSPTKVFDIDPNTG- 228
G DHAK+SP AT ++ P I I + ++ E Q + D P +G
Sbjct: 244 GSDHAKFSPVATASYRLLPTIKILKPIVGVDAEKFQGCFPQGVIGLQKITKKDAVPGSGL 303
Query: 229 -------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
+ V DA T E ++ E GK V++ + D FIF+VESTG + +L
Sbjct: 304 EEHVGEMRAVVEDASKDTVSRECLRHPEFEGK---VKLGRRRDHFIFSVESTGQWDSDEL 360
Query: 282 VLNAIEVLKQK 292
L +++ L+ K
Sbjct: 361 FLESVKHLRVK 371
>gi|320591803|gb|EFX04242.1| DNA-directed RNA polymerase 1 and 3 subunit [Grosmannia clavigera
kw1407]
Length = 376
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 150/302 (49%), Gaps = 34/302 (11%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR+MI+E+PT+AI+ I+ N+SV+ DE +AHRLGLIP T
Sbjct: 65 ASFSLIGVDASIANAFRRIMISEIPTVAIETAYIDNNTSVIQDEVLAHRLGLIPFTGGYD 124
Query: 82 MSMRFSR-------DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHS 131
F + D D + ++ +++ L+ +C +++ D LY + H
Sbjct: 125 GLRNFIKWWKRPGPDADPNEFPPSFDYNTIKLKLQVECTRNRSAAPGETDPLKLYHNAHV 184
Query: 132 VVP-VDFV----DPAGYDSTDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
++FV P+ + + R I++ KLR GQ + + KGIG DHAK+SP
Sbjct: 185 YARDIEFVPEGNQPSVFSGENAIRPVNPDILVAKLRPGQAIDIEMHMHKGIGSDHAKFSP 244
Query: 183 AATVTFMYEPEIHINEDLMESLSLE------------EKQSWVESSPTKVFDIDPNTGQV 230
T ++ P I I + ++ + +++ EK + +++ + + +
Sbjct: 245 VCTASYRLLPTITILQPILGADAVKFASCFPDGVIGLEKVTRKDAAQDEAYVDHIGDDKA 304
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
VVD T E ++ E K V++ + D FI+++ESTG + +L L +I +LK
Sbjct: 305 VVVDPMRDTVSRECLRHPEFQKK---VKLGRRRDHFIYSIESTGQWNSDELFLESIRLLK 361
Query: 291 QK 292
K
Sbjct: 362 IK 363
>gi|403261372|ref|XP_003923097.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Saimiri boliviensis boliviensis]
Length = 346
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 161/318 (50%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQERFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYMNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + E + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ E+ + E + K V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREIFRN-EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCRRFLDELDAVQM 345
>gi|435852104|ref|YP_007313690.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
gi|433662734|gb|AGB50160.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
Length = 264
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 133/290 (45%), Gaps = 34/290 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I EL D AKF L +T A+ AN +RR +A+VPTIAI V I N+SVL DE + R
Sbjct: 4 EVDILELSDRSAKFVLSNTSAAFANGIRRASLADVPTIAITEVNIYNNTSVLYDEQLGLR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
+ LIPLTS +M + C C C V L A + V S+DL SSD
Sbjct: 64 MALIPLTS----NMEDFVPKEECSCGDFCPACQVSLTLSA----EGPKIVYSQDLVSSDD 115
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V P D I I LR GQ++ L AIA G G H++W +
Sbjct: 116 KVQPAD-------------PNIPIADLREGQKIVLEAIAHMGYGNKHSRWQAGVACGYKN 162
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P++ + + + V P + + + ++ D T + + E
Sbjct: 163 MPKVEFS-------GCDLCGACVTECPVDIIKMGTESAEISQEDMLKCT----LCRLCEG 211
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
+ +++ E SFIFT+ES G+ +L+LNA V+K K A L+E
Sbjct: 212 VCDIDAIDVKTDEHSFIFTMESDGSYNTKELILNAGNVIKNK--AASLAE 259
>gi|7505021|pir||T34006 hypothetical protein H43I07.2 - Caenorhabditis elegans
Length = 697
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 152/303 (50%), Gaps = 41/303 (13%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F++ +A +ANALRRV+IAEVPT+A++ + + N+SV+ DE + HRLGL+PL +
Sbjct: 400 EFDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVD-PR 458
Query: 83 SMRFSR-----------DCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD------ 124
+F + DCD +GD F + C ++ T+ D
Sbjct: 459 GFQFPKEKVVGINEKGVDCDEEPEGDPAKNLI---FKINVSCTKNRNAVPTATDPKQLYH 515
Query: 125 ---LYSSDHSVVPV-----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
+YS VP+ F + A I++ KLR GQE+ A KGIG+D
Sbjct: 516 NSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDD--ILVAKLRPGQEIEASCHAVKGIGRD 573
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVD 234
HAK+SP AT ++ P I +N ++ + K + E V I+ + V D
Sbjct: 574 HAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFSEG----VIAIEKKGAKRIAVVKD 629
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
A T V + E + K +V++ + FIF+VESTGA+K+S+LV+ A +V++ K
Sbjct: 630 ARKDTCSRNVFRH-EDLSK--VVQLGKNKQHFIFSVESTGALKSSELVVEACKVMEIKCR 686
Query: 295 AVR 297
++R
Sbjct: 687 SLR 689
>gi|299750875|ref|XP_001829899.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
gi|298409112|gb|EAU91821.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
Length = 383
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 121/242 (50%), Gaps = 26/242 (10%)
Query: 7 QRFP-----KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
QR P KV+I L +F+L DAS+ANA RR+MIAEVPTIAI+ V + N+SV
Sbjct: 77 QRIPSRQNLKVQITRLSQHTIEFDLVGVDASIANAFRRIMIAEVPTIAIEHVYVWDNTSV 136
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLD 119
+ DE +AHR+GL+PL ++ S D D D ++ F L C + +
Sbjct: 137 IVDEVLAHRIGLVPLNVNPSIMDSRSPQNDPTDRD------TLIFKLDVTCTRNPNAPKG 190
Query: 120 VTSKDLYSSDHSVVPVDFV-DPAGYDS--------TDQQRGIIIVKLRRGQELRLRAIAR 170
T+ D +H V+ D V P G + I++ KLR GQ + + A
Sbjct: 191 STNPDELYINHEVLSRDLVWSPVGQQAEVFEGCPPAPINPNIVLTKLRPGQAVNMELHAV 250
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
KG+GKDHAK++P AT ++ P I I + + E + + + V +DP T QV
Sbjct: 251 KGVGKDHAKFTPVATASYRLLPHIKIK----KPIPPEHAEKFAKCFSPGVIKVDPQTKQV 306
Query: 231 YV 232
V
Sbjct: 307 SV 308
>gi|268556380|ref|XP_002636179.1| Hypothetical protein CBG01436 [Caenorhabditis briggsae]
Length = 367
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 153/301 (50%), Gaps = 37/301 (12%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL------ 76
+F++ +A +ANALRR++IAEVPT+A++ + + N+SV+ DE + HRLGL+PL
Sbjct: 70 EFDITRIEAPIANALRRILIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRG 129
Query: 77 ---TSERAMSMR-FSRDC-DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD------- 124
+E+ + + DC + GD F + C ++ T+ D
Sbjct: 130 FQFPTEKVVGINEKGVDCEEEPTGDPARHLI---FKINVTCTKNRNAVPTATDPKQLYHN 186
Query: 125 --LYSSDHSVVPVDFVDPAGYDSTDQQR----GIIIVKLRRGQELRLRAIARKGIGKDHA 178
+YS VP+ YD + + I++ KLR GQE+ A KGIG+DHA
Sbjct: 187 SSVYSRAFEWVPIG-KQSGNYDKKNVPKMVSDDILVAKLRPGQEIEASCHAVKGIGRDHA 245
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAE 236
K+SP AT ++ P I +N ++ + + + E V I+ + V DA
Sbjct: 246 KFSPVATASYRLLPTIRLNAEISGEAAERLQSVFSEG----VIGIEKKGAKRIAVVKDAR 301
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
T V + E + K +V++ + FIF+VESTGA+K+++LV+ A +V++ K ++
Sbjct: 302 KDTCSRNVFRH-EDLAK--VVQLGKNKQHFIFSVESTGALKSAELVVEACKVMETKCRSL 358
Query: 297 R 297
R
Sbjct: 359 R 359
>gi|322783207|gb|EFZ10793.1| hypothetical protein SINV_03179 [Solenopsis invicta]
Length = 344
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 147/300 (49%), Gaps = 25/300 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I + +D +F++ S+ANA RR++++EVPT+AI+ V I N+S+L DE +AHR
Sbjct: 39 KINIVQEQDREIEFDIIGCHTSLANAFRRILLSEVPTMAIEKVYIVNNTSLLQDEILAHR 98
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCE-----------FCSVEFHLRAKCHSDQTLD 119
LGLIPL RA F D + C+V H+ + +
Sbjct: 99 LGLIPL---RADPRLFEYPPSNARADDEISDQDTLRYELKVTCTVNPQAPKNSHNPEDMY 155
Query: 120 VTSKDLYSSDHSVVPVDF---VDPAGYDSTD-QQRGIIIVKLRRGQELRLRAIARKGIGK 175
SK +YS D VP+ + P G + + I++ K+R G E+ L A K IGK
Sbjct: 156 KNSK-VYSKDIKWVPIGQQGEMFPRGAEEFGVLENDILLCKMRPGHEIHLFMHAIKSIGK 214
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY---V 232
DHAK+SP AT ++ P I + + + + + QS ++ + + NTGQ Y
Sbjct: 215 DHAKFSPVATASYRLLPAIRLTKPVRDK-DADLLQSCFSPGVIEIVEQETNTGQKYREAR 273
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
V Y + + + + VE+ +D FIFT+ES G + + L A++VLK K
Sbjct: 274 VKNARYDSCSRNVHRYDQLK--NCVELSRVKDHFIFTIESVGILPPAVLFAEAVKVLKNK 331
>gi|322693281|gb|EFY85147.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium acridum CQMa 102]
Length = 1842
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 148/314 (47%), Gaps = 55/314 (17%)
Query: 20 DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE 79
+ + F L DAS+ANA RR++IAE+PT+AI+ V IE N+SV+ DE +AHRLGLIP
Sbjct: 1530 NSSSFSLMGLDASLANAFRRILIAEIPTLAIENVYIENNTSVIQDEVLAHRLGLIPFNGG 1589
Query: 80 R---AMSMRFSRDCDACDGD--GQCEFCSVEFHLRAKC--HSDQTLD-------VTSKDL 125
R +++ + +A + G ++ +V L C + D D + +
Sbjct: 1590 RDGLKNFLKWHKKPEAGEDPYAGCFDWNTVRLELNVTCTVNPDAAPDERDPLKAFNNAHV 1649
Query: 126 YSSDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGK 175
Y+ D VP D + P D I+I KLR Q + L KGIG
Sbjct: 1650 YAKDIVFVPTGRQVEFFSGEDAIAPVNPD-------ILIAKLRPRQTINLSMHMHKGIGA 1702
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------G 228
DHAK+SP AT ++ P I I + ++ + + + + P V ++ T G
Sbjct: 1703 DHAKFSPVATASYRLMPTIKILKPILGA----DAEKFARCFPQGVIGLEKVTPAEAKKAG 1758
Query: 229 QVY----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKA 278
Y V D T E ++ AE GK V++ + D FIF++ESTG +
Sbjct: 1759 SGYEGHAGEKKAVVKDPMKDTVSRECLRHAEFEGK---VKLGRRRDHFIFSIESTGQWDS 1815
Query: 279 SQLVLNAIEVLKQK 292
+L + A++ +K K
Sbjct: 1816 DELFMEAVKHMKLK 1829
>gi|342874377|gb|EGU76391.1| hypothetical protein FOXB_13069 [Fusarium oxysporum Fo5176]
Length = 381
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 146/316 (46%), Gaps = 55/316 (17%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
VK + A F L DAS+ANA RR++++E+PT+AI+ V IE N+SV+ DE +AHRL
Sbjct: 61 VKFHQNDQFLASFSLVGIDASLANAFRRILLSEIPTLAIENVYIENNTSVIQDEVLAHRL 120
Query: 72 GLIPLTSERA---MSMRFSRDCDACDGD--GQCEFCSVEFHLRAKCHSDQTLDVTSKD-- 124
GLIP R +++ + +A + G ++ +V L C ++ D
Sbjct: 121 GLIPFKGGREGLHNFLKWHKKPEAGEDPYAGCFDWNTVRLELNVTCTVNEDASPAENDPL 180
Query: 125 -------LYSSDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRA 167
+Y+ D VP D + P D I+I KLR Q + L
Sbjct: 181 KAYHNAHVYARDIVFVPTGKQVEYFSGEDAIAPTNPD-------ILIAKLRPRQTINLAM 233
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT 227
KGIG DHAK+SP AT ++ P I I + ++ + + + + + P V ++ T
Sbjct: 234 HMHKGIGSDHAKFSPVATASYRLLPTITITKPILGA----DAEKFAKCFPKGVIGLEKVT 289
Query: 228 GQ-----------------VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTV 270
+ VVDA T E ++ E GK V++ + D FIF++
Sbjct: 290 AEEAAQAGSGYEGQEGETKAVVVDAMKDTVSREALRHKEFEGK---VKLGRRRDHFIFSI 346
Query: 271 ESTGAIKASQLVLNAI 286
ESTG + +L L ++
Sbjct: 347 ESTGQWDSDELFLESV 362
>gi|389852940|ref|YP_006355174.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
gi|388250246|gb|AFK23099.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
Length = 259
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 141/284 (49%), Gaps = 38/284 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I E +DD KF L+ + ANALRR ++AEVPT A+D VE N S L DE IAHR
Sbjct: 3 EIEILEKRDDSIKFILKGVHVAFANALRRTILAEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L +IPLT+ RF + DA + D S+E ++ V S DL S D
Sbjct: 63 LAMIPLTTPVD---RF--ELDALELDDYTVTLSLE--------AEGPGIVYSGDLKSDDP 109
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV I IVKL +GQ L A A+ G GKDHAKW P V + Y
Sbjct: 110 DVRPV-------------TPDIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQPGF-VYYKY 155
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
+IHI+++ +E + + + + ++ N +V V + + E E
Sbjct: 156 YTKIHISKE------IEGWEKLKKLAKKRGLPVEENEKEVIVTTIKPFYIPKEF---EEY 206
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
GK EI D+++FTVE+ G + ++V A+++L +K D
Sbjct: 207 EGKEIWEEIVP--DTYVFTVETNGELPVEEIVSIALKILMRKAD 248
>gi|149069364|gb|EDM18805.1| RNA polymerase 1-1, isoform CRA_b [Rattus norvegicus]
Length = 291
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 151/299 (50%), Gaps = 29/299 (9%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RA 81
+F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R
Sbjct: 7 EFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRL 66
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSSDHSV 132
R + + + D +++F L+ +C + + S D +Y+ +
Sbjct: 67 FEYRNPGEEEGTEID------TLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTW 120
Query: 133 VPVDF---VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
VP+ V P G I+I +LR GQE+ L KGIGKDHAK+SP AT ++
Sbjct: 121 VPLGNQADVFPEG-TVRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYR 179
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAEAYTYDDEVIKK 247
P+I L+E + E + + V + G+ V +A T+ E+ +
Sbjct: 180 LLPDI----TLLEPVEGEAAEELSQCFSPGVIAVQEVQGKKVARVANARLDTFSREIFRH 235
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
E + K V + D +IF+VESTG + LV AI++L K D VE D
Sbjct: 236 -EKLKKA--VRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDELDAVEMD 291
>gi|308806201|ref|XP_003080412.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
gi|116058872|emb|CAL54579.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
Length = 382
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 154/314 (49%), Gaps = 37/314 (11%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ I + ++ FE+ A+ ANA RR++I+EVPT+AI+ V + N+SV+ DE AHRL
Sbjct: 73 LTITDASEERVVFEMEGCSAAFANAFRRIIISEVPTMAIEKVYMINNTSVVPDEVFAHRL 132
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD-----VTSKDLY 126
GL+P+ ++ A RF D E ++ L A+CH ++ D V ++ +Y
Sbjct: 133 GLVPIKADPA---RFEYR---GPNDLANETNTIVLSLHARCHRERLDDGSLGEVVNRSVY 186
Query: 127 SS------DHSVVP-------VDFVDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAI 168
S+ D S +P DF +++ G I++VKL GQE+ L
Sbjct: 187 SNALQWCPDGSQLPEEERAKYSDFKRSQRESFGEEELGCVHDDILLVKLAPGQEIELECH 246
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMES---LSLEEKQSWVESSPTKVFDIDP 225
KGIG++H+KWSP T + PEI I E + + + +E ++ ++ +
Sbjct: 247 CVKGIGQEHSKWSPVGTCWYRMVPEITILEPITGADADVFMERCANFNDTHACYACEGKG 306
Query: 226 NTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL---VEIYAKEDSFIFTVESTGAIKASQLV 282
+ V VV+ E ++ E G+PG + + ++ FIFT+ES G +K +
Sbjct: 307 DKKTVKVVETRGCDLCVERVR--ELTGEPGWDEKIAVRKHKNHFIFTIESVGQMKPGTIF 364
Query: 283 LNAIEVLKQKLDAV 296
A+++L K V
Sbjct: 365 KEAVKILASKCQNV 378
>gi|402867078|ref|XP_003897695.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1 [Papio anubis]
Length = 346
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 156/309 (50%), Gaps = 34/309 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHR 109
Query: 71 LGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC---------HSDQTLDV 120
LGLIP+ ++ R R D D + D +++F L+ +C SD
Sbjct: 110 LGLIPIHADPRLFEYRNQGDEDGTEID------TLQFRLQVRCTRNPHAAKDSSDPNELY 163
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
+ +Y+ + +P+ + T + I+I +LR GQE+ L KGIG DHA
Sbjct: 164 VNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGNDHA 223
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAE 236
K SP AT ++ P+I L+E + E + V ++ G+ V +
Sbjct: 224 KISPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPR 279
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK---- 292
T+ E+ + E + K +V + D +IF+VESTG + LV AI+VL K
Sbjct: 280 LDTFSREIFRH-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRF 336
Query: 293 ---LDAVRL 298
LDAV++
Sbjct: 337 LDELDAVQM 345
>gi|344253232|gb|EGW09336.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Cricetulus
griseus]
Length = 282
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 148/291 (50%), Gaps = 36/291 (12%)
Query: 30 DASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMSMRFSR 88
DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R
Sbjct: 5 DAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNPG 64
Query: 89 DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSSDHSVVPVDF-- 137
+ + + D +++F L+ +C + S D +Y+ + VP+
Sbjct: 65 EEEGTEID------TLQFRLQVRCTKNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQA 118
Query: 138 -VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
V P G I+I +LR GQE+ L KGIGKDHAK+SP AT ++ P+I
Sbjct: 119 DVFPEGTIRPVHD-DILIAQLRPGQEIDLVMHCVKGIGKDHAKFSPVATASYRLLPDI-- 175
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKP 254
L+E + E + V ++ GQ V +A T+ E+ + E + K
Sbjct: 176 --TLLEPVEGEAAEELSRCFSPGVIEVQEVQGQKLARVANARLDTFSREIFRN-EKLKKA 232
Query: 255 GLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK-------LDAVRL 298
V + D +IF+VESTG + LV AI++L K LDAV++
Sbjct: 233 --VRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDELDAVQM 281
>gi|449662625|ref|XP_002166070.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Hydra magnipapillata]
Length = 354
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 159/305 (52%), Gaps = 36/305 (11%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ + +L + +F++ DAS+ANA RR++IAEVPT+AI+ V I N++++ DE +AHRL
Sbjct: 49 IDVIKLNQNEMEFDMIGIDASIANAFRRILIAEVPTMAIEKVFIFNNTTIVQDEILAHRL 108
Query: 72 GLIPLTSE-RAMSM---RFSRDCDACDGDGQC--EFCSVEFHLRAKCHSDQ--TLDVTSK 123
GLIP+ ++ R + + + D + E + F L+ KC + + D T
Sbjct: 109 GLIPILADPREFNFPPAKLEDESKLTDEERLAVDEHHHLVFELKIKCSKNPKASSDATDP 168
Query: 124 DLYSSDHSVVP--VDFVDPAGYD----STDQQRG----IIIVKLRRGQELRLRAIARKGI 173
D+ ++ V+ + ++ P G ST+ R I+I KLR GQEL +R KGI
Sbjct: 169 DVLYLNNKVMTKHMKWI-PIGRQAEKFSTNIVRPVFDDILIAKLRPGQELDIRMHCVKGI 227
Query: 174 GKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
GKDHAK+SP AT ++ EI + ++ L+ + + + DI+ N VV
Sbjct: 228 GKDHAKFSPVATASYRLLREITLLTPVVGELAETLAKCFFKGVKK---DIEENGITRAVV 284
Query: 234 DAEAY------TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
D Y +E++KK +V++ D FI++VESTGA+ LV AI+
Sbjct: 285 DNPRKDSGMREIYRNEILKK--------IVKLEKVRDHFIYSVESTGALPPDVLVEEAIK 336
Query: 288 VLKQK 292
+L K
Sbjct: 337 ILHAK 341
>gi|121716353|ref|XP_001275782.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
gi|119403939|gb|EAW14356.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
Length = 374
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 41/305 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSE 79
+ F L D S+ANA RR+++AEVPT+AI+ V + N+SV+ DE +A RLGLIPL + E
Sbjct: 64 SSFSLIGVDPSIANAFRRILMAEVPTLAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVE 123
Query: 80 RAMSMRFSR---DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVV 133
MR+ + + D G ++ ++ L +C + D LY + H
Sbjct: 124 GLNWMRWFKKPTEEDPDSGSNPADYNTIVLRLDVECAENPNAAPGEDDPRKLYKNAHVYA 183
Query: 134 PVDFVDPAGY-------DSTDQ--QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
P G D Q I++ KLR GQ++ + KGIG DHAK+SP A
Sbjct: 184 KDITYHPVGRQEQFFTGDGAIQPVNPDILVAKLRPGQKIDMELHCIKGIGADHAKFSPVA 243
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT---------------GQ 229
T ++ P+I I + + ++ + + + P V +++P T G+
Sbjct: 244 TASYRLMPDIKI----LRPIIGDDAKKFAKCFPKGVIELEPVTSTEAAQKGSEYEGHAGE 299
Query: 230 VYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
+ V + + T E ++ E GK L I D FIF VESTG ++ L L +++
Sbjct: 300 LKAVVRDPFNDTVSRECLRHEEFQGKVKLGRI---RDHFIFNVESTGQFESDYLFLESVK 356
Query: 288 VLKQK 292
VLK K
Sbjct: 357 VLKLK 361
>gi|350586678|ref|XP_003482243.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sus scrofa]
Length = 346
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 164/318 (51%), Gaps = 34/318 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R + D +G E +++F L+ +C + +
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYR-----NLGDEEG-TEIDTLQFRLQVRCTRNPSAAK 154
Query: 121 TSKD---------LYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
S D +Y+ + VP+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIGKDHAK+SP AT ++ P+I L+E + + + V ++ G+
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGDAAEELSRCFSPGVIEVQEIQGK 270
Query: 230 --VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V + T+ EV + + + K +V + D +IF+VESTG + LV AI+
Sbjct: 271 KVARVANPRLDTFSREVFRN-DMLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIK 327
Query: 288 VLKQK-------LDAVRL 298
VL K LDAV++
Sbjct: 328 VLMGKCRRFLDELDAVQM 345
>gi|242819534|ref|XP_002487338.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
gi|218713803|gb|EED13227.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
Length = 373
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 148/313 (47%), Gaps = 42/313 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 79
A F L DAS+ANA RR++IAEVPT+A++ V I N+SV+ DE +A RLGLIPL E
Sbjct: 64 ASFSLVGLDASIANAFRRILIAEVPTLAVEYVYIINNTSVIQDEVLASRLGLIPLKGSIE 123
Query: 80 RAMSMRFSRDCDACDGDGQ--CEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVVP 134
M++ + D G +F +V L +C ++ ++D Y + H
Sbjct: 124 GLNWMQWFKKPTEEDPKGSEPSDFNTVVLRLNVECSVNEKAPPGAEDPRIRYHNAHIYAR 183
Query: 135 VDFVDPAG----YDSTDQQ-----RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
P G Y + D + I+I KLR GQ + L KGIG DHAK+SP AT
Sbjct: 184 DITFHPQGRQTNYFTGDGEIQPVNPDILIAKLRPGQVIELEMHCVKGIGADHAKFSPVAT 243
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF---DIDP------------NTGQ- 229
T+ PEI I + + E+ + + + P V I P +TG+
Sbjct: 244 ATYRLLPEIRI----LRPIIGEDAKKFAKCFPKGVIGFEKITPAEAAQKGSGYEGHTGED 299
Query: 230 -VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
VVD T E ++ E K V++ D FIF +ESTG + L L ++ V
Sbjct: 300 KAVVVDPFKDTVSRECLRHDEFKDK---VKLGRVRDHFIFNIESTGQFPSDTLFLESVTV 356
Query: 289 LKQKLDAVRLSED 301
L KL +RL +
Sbjct: 357 L--KLKCLRLKRE 367
>gi|302923338|ref|XP_003053654.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734595|gb|EEU47941.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 381
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 138/302 (45%), Gaps = 47/302 (15%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
+ F L DAS+ANA RR+++AE+PT+A++ V IE N+SV+ DE +AHRLGL+P R
Sbjct: 71 SSFSLVGIDASLANAFRRILLAEIPTLAVENVYIENNTSVIQDEVLAHRLGLVPFKGGRE 130
Query: 82 MSMRFSRDCDACDG-----DGQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYS 127
F + + G ++ +V L C + T D +Y+
Sbjct: 131 GLRDFLKWYKKPEPGEDPFSGCFDYNTVRLELNVTCTVNPDASPTENDPLKAYNNAHVYA 190
Query: 128 SDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
D VP D + P D I+I KLR Q + L KGIG DH
Sbjct: 191 RDIVFVPTGRQAEYFDGEDAIAPTNPD-------ILIAKLRPRQTINLAMHMHKGIGADH 243
Query: 178 AKWSPAATVTFMYEPEIHINEDLMES-------------LSLEEKQSWVESSPTKVFDID 224
AK+SP AT ++ P I I + ++ + + LE + + ++
Sbjct: 244 AKFSPVATASYRLLPTITITKPILGADADKFAKCFPQGVIGLERVTAEEAAQAGSGYEGH 303
Query: 225 PNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
+ VVDA T EV++ E GK V++ + D FIF++ESTG + +L L
Sbjct: 304 EGETKAVVVDAMKDTVSREVLRHEEFEGK---VKLGRRRDHFIFSIESTGQWDSDELFLE 360
Query: 285 AI 286
++
Sbjct: 361 SV 362
>gi|195342596|ref|XP_002037886.1| GM18508 [Drosophila sechellia]
gi|194132736|gb|EDW54304.1| GM18508 [Drosophila sechellia]
Length = 331
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 139/275 (50%), Gaps = 25/275 (9%)
Query: 34 ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDA 92
LRR+M+++VP++AI+ V I N+S++ DE +AHR+GL+PL ++ R + R +A
Sbjct: 63 CKCLRRMMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEA 122
Query: 93 CDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSDHSVVPVDF-VDPAGYDSTDQQ 149
E ++EF L+ KC D D ++ D +H V P G +
Sbjct: 123 -----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYS 177
Query: 150 RG--------IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
I+I +LR G EL LR +A KG+G+DHAK+SP AT T+ P I +N ++
Sbjct: 178 ESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVT 237
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYA 261
+ + + SP V ID N YV DA T V + + L I
Sbjct: 238 GKDAYLLQNCF---SPG-VIGIDENE-TAYVKDARYDTCSRNVYRYPQLNDAVTLARI-- 290
Query: 262 KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
D +IF+VES GA+K + L A++VLK+K A+
Sbjct: 291 -RDHYIFSVESVGALKPDVIFLEAVKVLKRKCRAL 324
>gi|149732228|ref|XP_001502091.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Equus caballus]
Length = 346
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 154/306 (50%), Gaps = 29/306 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDHFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPL-TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ R R D + + D +++F L+ +C +
Sbjct: 101 VQDEILAHRLGLIPIHVDPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 121 TSKD---LYSSDHSVVPVDFV-DPAGYDSTDQQRG--------IIIVKLRRGQELRLRAI 168
S D LY +H V + P G + G I+I +LR GQE+ L
Sbjct: 155 DSSDPSELY-VNHKVYTRHMIWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMH 213
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KGIGKDHAK+SP AT ++ P+I L+E + + + V ++ G
Sbjct: 214 CVKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGDAAEELSRCFSPGVIEVQEVQG 269
Query: 229 Q--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ V + T+ EV + E + K +V + D +IF+VESTG + LV AI
Sbjct: 270 KKVARVANPRLDTFSREVFRH-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAI 326
Query: 287 EVLKQK 292
+VL K
Sbjct: 327 KVLMGK 332
>gi|219121193|ref|XP_002185825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582674|gb|ACI65295.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 319
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 134/296 (45%), Gaps = 27/296 (9%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL------- 76
E D S NALRR+++AEVPT+A++ + + NSS+++DE ++HRLGLIPL
Sbjct: 14 LEFLHVDTSFVNALRRILLAEVPTVALENIYMWENSSLIHDEVLSHRLGLIPLKIDARLL 73
Query: 77 ----------TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAK--CHSDQTLDVTSKD 124
T + R C + G+ + + H A +DQ +K
Sbjct: 74 DEQDDDDPSPTDRNTVVFRLGVSCGSDPNKGKAKH-KADSHENANDAAEADQDERPYTKH 132
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
+YS D VP + D I+I KLR GQ + L R G+GKDHAK+SP A
Sbjct: 133 VYSKDLVWVPQGDQEERLQDICAMHDDILIAKLRPGQSIELEVHGRVGVGKDHAKFSPVA 192
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSW----VESSPTKVFDIDPNTGQVYVVDAEAYTY 240
T ++ P I + D+ + ++ E + E PT D + + V + A T
Sbjct: 193 TASYRLMPHIELLRDVYDEVADELVHVYEPGVFEIVPTDATDPAGTSRKARVCNPYACTM 252
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
++ E + I D FIF+VES G LV A+ +L++K V
Sbjct: 253 SRNYMRHTELAQAVRMSRI---PDHFIFSVESVGMYAPGVLVAEALRILQRKCRKV 305
>gi|355570776|ref|ZP_09042046.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
gi|354826058|gb|EHF10274.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
Length = 281
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 139/291 (47%), Gaps = 32/291 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I + D A+F L + ANA RR MI EVPT+AI+ V I N+S L DE +AHR
Sbjct: 2 EIEILRMDDSQARFCLSGPSQAFANAFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ +E + + +D +C G+G C+ C V F L + V S+DL D
Sbjct: 62 LGLIPIKTEPGLYV--PQDKCSCGGEG-CDRCGVAFTLSV----EGPGMVYSRDLIPQDP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VP VD I IVKL + Q++ L A A G+ HAKW P F
Sbjct: 115 RAVPA--VDT-----------IPIVKLGKDQKVVLEARAVLNCGRVHAKWQPTTACGFKN 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE----AYTYDDEVIK 246
P I + S + V+ P + ++ G+V V++ + E
Sbjct: 162 YPVIDV------SNRCDGCGRCVDECPRSILEV--RNGRVTVIENRLEECSLCRLCEKAC 213
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ +G+ + I +++ FIF VE G++ ++ A++ LK + D +R
Sbjct: 214 MSTGIGEEPAITITSEKSRFIFVVEGDGSLPVGDIITGALKYLKDQSDELR 264
>gi|340520524|gb|EGR50760.1| predicted protein [Trichoderma reesei QM6a]
Length = 377
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 47/302 (15%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR++IAE+PT+AI+ V IE N+SV+ DE +AHRLGLIP R
Sbjct: 67 ASFSLVGIDASLANAFRRILIAEIPTLAIEDVYIENNTSVIQDEVLAHRLGLIPFNGGRE 126
Query: 82 MSMRFSRDCDACDGD-----GQCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYS 127
F + + ++ +V L C + T D +Y+
Sbjct: 127 GIHNFLKWYKKPEAGEDPYANSFDWNTVRLELNVTCTVNPDASPTETDPLKAYNHAHVYA 186
Query: 128 SDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
D VP + + P D I+I KLR Q + L KGIG DH
Sbjct: 187 KDIVFVPTGRQVEYFSGENAIAPVNPD-------ILIAKLRPKQSINLAMHMHKGIGADH 239
Query: 178 AKWSPAATVTFMYEPEIHINEDLMES-------------LSLEEKQSWVESSPTKVFDID 224
+K+SP AT ++ P I+I ++ + + LE+ S P ++
Sbjct: 240 SKFSPVATASYRLLPLINITRPIIGADAEKFQRCFPEGVIGLEKISREEASRPGSGYEGH 299
Query: 225 PNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
+ V D T E ++ E GK V++ + D FIF++ESTG + +L L
Sbjct: 300 AGELKAVVKDTMKDTVSREALRHPEFEGK---VKLGRRRDHFIFSIESTGQWDSDELFLE 356
Query: 285 AI 286
A+
Sbjct: 357 AV 358
>gi|406866169|gb|EKD19209.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 379
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 145/312 (46%), Gaps = 41/312 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F L DAS+ANA RR+MIAE+PT+AI+ V I N+S++ DE +AHRLGLIPL
Sbjct: 68 ASFSLIGLDASVANAFRRIMIAEIPTLAIENVYIYNNTSIIQDEVLAHRLGLIPLKGGNE 127
Query: 82 MSMRFSRDCDACDGDGQ-----CEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVV 133
+ + + + Q ++ ++ L +C + KD LY + H
Sbjct: 128 GLLDYLKWLKKPEESSQESPVNYDYNTILLELNVECTKNHDAPKGEKDPLVLYHNAHIYA 187
Query: 134 PVDFVDP--------AGYDSTDQQRG-IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
P +G D+ + I+I KLR GQ + L A KG+G DHAK+SP A
Sbjct: 188 KDIKFKPFGNQHKYFSGEDAIETTNPDILIAKLRPGQCIELEMHAIKGVGSDHAKFSPVA 247
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY------ 231
T ++ P I I ++ + ++ + + P V ID T G Y
Sbjct: 248 TASYRLLPTISI----LKPILGKDAEKFKSCFPEGVIGIDRVTKKEAEMVGSGYEGHEGE 303
Query: 232 ----VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
V D T E ++ E K L I D FIF VES G K+ +L + +I+
Sbjct: 304 KKAVVFDTMKDTVSRECLRHEEFKDKVKLGRI---RDHFIFQVESLGQWKSDELFMESIK 360
Query: 288 VLKQKLDAVRLS 299
VL+ K + ++ S
Sbjct: 361 VLRLKCENMKRS 372
>gi|116180930|ref|XP_001220314.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
gi|88185390|gb|EAQ92858.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
Length = 374
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 153/325 (47%), Gaps = 41/325 (12%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D S++R +V+ + A F L DAS+ANA RR+MIA++PT+AI+ V I N+SV
Sbjct: 44 DIESFRRGFRVEFHQNDPYEASFSLIGIDASIANAFRRIMIADIPTLAIETVFINNNTSV 103
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRF----SRDCDACD-GDGQCEFCSVEFHLRAKC---- 112
+ DE ++HRLGLIP +F + D + + + +V L +C
Sbjct: 104 IQDEVLSHRLGLIPFKGGHEGLHKFLKWWRKPTDESEINNSYYDNNTVSLRLEVQCEHNE 163
Query: 113 -----HSDQTLDVTSKDLYSSDHSVVPVDFVDP--AGYDSTDQ-QRGIIIVKLRRGQELR 164
+D T + +Y+ D PV D +G D+ I+I KLR GQE+
Sbjct: 164 KAAAGETDPTKLYKNAHVYARDIEFCPVGRQDKYFSGADAIAPVNPDILIAKLRPGQEIS 223
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
L KG+G DH+K+SP AT ++ P I I ++ ++ + ++ P V ++
Sbjct: 224 LSMHMHKGVGSDHSKFSPVATASYRLMPVISIERPILG----KDAEKFMRCFPPGVIKLE 279
Query: 225 PNT-------GQVY----------VVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFI 267
T G Y V D T E ++ E GK V++ + D FI
Sbjct: 280 KVTKKEAAKKGSGYEGHEGEDKAVVADPMRDTVSRECLRHEEFKGK---VKLGRRRDHFI 336
Query: 268 FTVESTGAIKASQLVLNAIEVLKQK 292
+ VESTG ++ + L ++ LK++
Sbjct: 337 YLVESTGQWESDAIFLESVAHLKKR 361
>gi|406698967|gb|EKD02188.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
8904]
Length = 378
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 147/332 (44%), Gaps = 63/332 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P + +R L D F L D + AN+LRR M+A+VPT+AID V N+S + DE +AH
Sbjct: 26 PNILVRNLNRDETTFHLSGVDMAYANSLRRTMMADVPTLAIDQVSFYQNTSPIPDEMLAH 85
Query: 70 RLGLIPLTS-ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ---TLDVTSKDL 125
RLG++PL S + +R++RDCD +G C +C V L+ + + + VTS L
Sbjct: 86 RLGMVPLISRDVGKGLRYTRDCDCDEG---CYYCMVTLRLKVSAVNREYGSPMAVTSDML 142
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGII----------------------IVKLRRGQEL 163
P D +++R +I + ++ RGQE+
Sbjct: 143 EVIPSPNTPQQSPYGPPPDIGEEERELIAHHDPELGVPVGKGDPTASPIQLARISRGQEI 202
Query: 164 RLRAIARKGIGKDHAKWSPAATVTFMYEP--EIHINEDLMESLSLEEKQSWVESSPTKVF 221
+ A KGI K HAKWSP + V + Y+P ++ + E+ + E W S+ F
Sbjct: 203 EVVCKAYKGIAKHHAKWSPLSAVAYEYDPYNKLRHTDYWFETDAAAE---WPLSA-NANF 258
Query: 222 DIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
+ PN + + +A TY T ES G++ +
Sbjct: 259 ETPPNPNEPFDFNAVPSTY--------------------------YMTAESVGSVPVRSV 292
Query: 282 VLNAIEVLKQKLDAVRLS--EDTVEADDQFGE 311
A +++ + L V L+ ++T +D+ GE
Sbjct: 293 FEQACDIMVENLAQVILAVQQETGVDEDEIGE 324
>gi|304314287|ref|YP_003849434.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
gi|302587746|gb|ADL58121.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
Length = 264
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 138/287 (48%), Gaps = 34/287 (11%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+ ++E D F + NA+RR+ + EVP +AI+ V + N + + DE +AHRL
Sbjct: 3 IALKEKTDTEMVFVVTGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDARMFDEVLAHRL 62
Query: 72 GLIPLTS--ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
GL+PL + E ++ +CD + C CSV F L+ K V S+DL S
Sbjct: 63 GLVPLKADPEFIEGLKMPEECDC---EEYCSECSVSFTLKKK----GPGVVYSRDLLSET 115
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+V PV + D I +VKL E+ L A+A+ G+G+DHAKW P +
Sbjct: 116 PAVEPV-YPD------------IPLVKLGDEDEVELEAVAQLGVGRDHAKWEPTTACAYK 162
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y P I E+ E L V++ P V + +G+ V+D E + ++ +
Sbjct: 163 YYPMITFTEECDECLEC------VDACPRGV--LGDESGKPEVLDVENCSMCKSCVRACD 214
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
G + + +E FIF +E+ G++ ++L A ++L+ K + V
Sbjct: 215 K----GAIIVGYEEGKFIFRIETDGSVDPQDVLLKACDILRDKAERV 257
>gi|15219773|ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|2462755|gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|24899667|gb|AAN65048.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|1586550|prf||2204246B RNA polymerase
Length = 385
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 35/310 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV + L + F++ A +ANA RR+++AE+P++AI+ V + N+SV+ DE +AHR
Sbjct: 82 KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-HSDQTLDVTSKDLYSSD 129
LGLIP+ ++ + S + D E ++ F L KC D V + +L
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLP 195
Query: 130 HSVVPV-----DFVDPAGYDSTDQQ----------------RGIIIVKLRRGQELRLRAI 168
+ + P Y S + + I+I KL GQE+ L A
Sbjct: 196 NGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAH 255
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
A KGIGK HAKWSP AT + PE+ L++ + + V+ P KVFDI+ + G
Sbjct: 256 AVKGIGKTHAKWSPVATAWYRMLPEV----VLLKEFEGKHAEELVKVCPKKVFDIE-DMG 310
Query: 229 QVYVVDAEAYTYDDEVIKKA--EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
Q A D + ++ + + V++ ++ FIFT+ESTG+ L A+
Sbjct: 311 QGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAV 370
Query: 287 EVLKQKLDAV 296
++L+ K + V
Sbjct: 371 KILEDKCERV 380
>gi|401889280|gb|EJT53216.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
2479]
Length = 378
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 147/332 (44%), Gaps = 63/332 (18%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P + +R L D F L D + AN+LRR M+A+VPT+AID V N+S + DE +AH
Sbjct: 26 PNILVRNLNRDETTFHLSGVDMAYANSLRRTMMADVPTLAIDQVSFYQNTSPIPDEMLAH 85
Query: 70 RLGLIPLTS-ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ---TLDVTSKDL 125
RLG++PL S + +R++RDCD +G C +C V L+ + + + VTS L
Sbjct: 86 RLGMVPLISRDVGKGLRYTRDCDCDEG---CYYCMVTLRLKVSAVNREYGSPMAVTSDML 142
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGII----------------------IVKLRRGQEL 163
P D +++R +I + ++ RGQE+
Sbjct: 143 EVIPSPNTPQQSPYGPPPDIGEEERELIAHHDPELGVPVGKGDPTASPIQLARISRGQEI 202
Query: 164 RLRAIARKGIGKDHAKWSPAATVTFMYEP--EIHINEDLMESLSLEEKQSWVESSPTKVF 221
+ A KGI K HAKWSP + V + Y+P ++ + E+ + E W S+ F
Sbjct: 203 EVICKAYKGIAKHHAKWSPLSAVAYEYDPYNKLRHTDYWFETDAAAE---WPLSA-NANF 258
Query: 222 DIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQL 281
+ PN + + +A TY T ES G++ +
Sbjct: 259 ETPPNPNEPFDFNAVPSTY--------------------------YMTAESVGSVPVRSV 292
Query: 282 VLNAIEVLKQKLDAVRLS--EDTVEADDQFGE 311
A +++ + L V L+ ++T +D+ GE
Sbjct: 293 FEQACDIMVENLAQVILAVQQETGVDEDEIGE 324
>gi|146304892|ref|YP_001192208.1| DNA-directed RNA polymerase D [Metallosphaera sedula DSM 5348]
gi|145703142|gb|ABP96284.1| DNA-directed RNA polymerase, subunit D [Metallosphaera sedula DSM
5348]
Length = 262
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 140/278 (50%), Gaps = 41/278 (14%)
Query: 27 RDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS-MR 85
+D N++RR + VP +A+D V + N+S L DE +AHRLGLIP S+ A+ R
Sbjct: 18 KDYPLEFVNSIRRASMLYVPVMAVDEVYVIENNSPLYDEMLAHRLGLIPFDSKDALDYYR 77
Query: 86 FSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDS 145
+C C + C+ C + ++ K Q + V S+D+ + D +V P+
Sbjct: 78 RPEECIECTEN--CDRCFTKAYIDVKAEDSQVM-VYSRDIRTEDPNVTPI---------- 124
Query: 146 TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLS 205
+ I IV L + Q++ L R G GK+HAK++P + Y+P++ +N+D
Sbjct: 125 ---SKDIPIVLLGKNQKVTLEMKMRLGYGKEHAKFNPVSLAILRYKPKVEVNKDC----- 176
Query: 206 LEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDS 265
+ VE P +VF + G++ VV+ A T +E +K E + + + +
Sbjct: 177 ----EKAVEVCPERVFSFE--NGKLKVVNEMACTLCEECVKACEG------INVSPEPNQ 224
Query: 266 FIFTVESTGA-------IKASQLVLNAIEVLKQKLDAV 296
+I +ES G+ I+A++ +L+ IE LK+K++ +
Sbjct: 225 YILEIESVGSLEPRRILIEATKSILSKIEELKKKVEGL 262
>gi|71031382|ref|XP_765333.1| DNA-directed RNA polymerase I [Theileria parva strain Muguga]
gi|68352289|gb|EAN33050.1| DNA-directed RNA polymerase I, putative [Theileria parva]
Length = 303
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 24/215 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+VK + +++ E+ D S+ANALRR++I+EVPT+A++ V+I N+ V+ DE +AHR
Sbjct: 34 QVKFLKKTPEFSVVEIVGLDVSLANALRRILISEVPTLAVETVQIYQNTGVIQDELLAHR 93
Query: 71 LGLIPLTSERAM---SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHS-DQTLDVTSKDLY 126
LGLIP + + F +C+ + SV F L+ K + DQ+ ++S L
Sbjct: 94 LGLIPFAIDPDLFNFKSNFKTNCEEINDKN-----SVCFKLKVKYNKFDQSDYLSSNSLM 148
Query: 127 SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
D+ PV YD I+I KL GQE+ L KGIGK H+KWSP +T
Sbjct: 149 FKDNPPKPV-------YDD------ILITKLAPGQEIDLNMYLEKGIGKVHSKWSPVSTA 195
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF 221
+ + P+I + + L+ EK+ + P VF
Sbjct: 196 VYKFMPKIEFSTE--HKLTANEKKMLPKICPMNVF 228
>gi|453085895|gb|EMF13938.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Mycosphaerella populorum SO2202]
Length = 393
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 161/343 (46%), Gaps = 56/343 (16%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++ + K A F L DAS+ANALRR+ +AE+PT+AI+ V + N+S++ DE +AHR
Sbjct: 55 RIQFHQNKPLDAAFSLVGVDASVANALRRIALAELPTLAIENVYMYDNTSIIQDEVLAHR 114
Query: 71 LGLIPLT------------------SERAMSMRFSRDCDACDGDGQC----EFCSVEFHL 108
+GLIPL S+ A +F + + D + +V +L
Sbjct: 115 MGLIPLKGGKEGLRWMQWFKKTPPESDHAAYAQFMAEQEEEGADRSASTPSDLNTVVLNL 174
Query: 109 RAKCH-------------------SDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQ 149
+ +C +D T + ++Y+ + P P + +
Sbjct: 175 KVECRWKTVEEDGVDGKKLAREGSTDPTEKYVNSNVYAHQITFEPQGQRQPEFFSGENAI 234
Query: 150 RG----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLS 205
R I+I KLR GQ + + KGIG DHAK+SP AT ++ P+I I + ++ +
Sbjct: 235 RPVNPDILIAKLRPGQRIHMTMHCVKGIGADHAKFSPVATASYRLLPDIKITQPIVGA-- 292
Query: 206 LEEKQSWVESSPTKVFDI--DPNTGQVYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYA 261
+ +++ + P V + DP +G+ V + + T E ++ E K L I
Sbjct: 293 --DAKAFQKCFPKGVIGLEEDPESGEKRAVVKDPFKDTVSRECLRYDEFKDKVKLGRI-- 348
Query: 262 KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
D FIF++ES+G + +L +++I VLKQK + D +E
Sbjct: 349 -RDHFIFSMESSGQFDSDELFIDSIRVLKQKATTFKKHLDALE 390
>gi|307103493|gb|EFN51752.1| hypothetical protein CHLNCDRAFT_27642 [Chlorella variabilis]
Length = 381
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 136/298 (45%), Gaps = 46/298 (15%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL------ 76
+FE++ ++AN+LRR+MI+E PT+AI+ V I N+SV+ DE ++HRLGLIPL
Sbjct: 92 EFEMKGVSCALANSLRRIMISEAPTMAIEHVYIVNNTSVIQDEVLSHRLGLIPLKVDPRL 151
Query: 77 ----------TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY 126
+ + + ++ +C G L+ + D TS
Sbjct: 152 FQYKAKEDAPSEQNTIVLKLKVECRRLPNSGMENDKVYSRDLQWLPEGSEMPDETSCRFA 211
Query: 127 SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
SS ++VP D V P D I+I KLR GQ + L KG+G DHAKWSP AT
Sbjct: 212 SSQAALVPED-VRPVHDD-------ILIAKLRPGQAIELECHCIKGVGDDHAKWSPVATT 263
Query: 187 TFMYEPEI--------HINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
+ PE+ I E+L+E L + + V V DA
Sbjct: 264 WYRLMPEVVLLQQPRGKIAEELVEQLPGLLQLL-----------GSGDHATVVVGDAPCS 312
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+ K M L +I +D FIFT+ESTGA + +L A++++ K D V
Sbjct: 313 LCWGACVDKERYMPYLQLRKI---KDHFIFTIESTGAWRPHELFKYAVQLMVSKCDKV 367
>gi|451849744|gb|EMD63047.1| hypothetical protein COCSADRAFT_92552 [Cochliobolus sativus ND90Pr]
Length = 376
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 45/314 (14%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-- 79
+F L D S+ANA RR++++E+PT+AI+ V I N+S++ DE +AHRLGL+PL +
Sbjct: 62 TQFSLTGIDTSVANAFRRILLSEIPTLAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDRE 121
Query: 80 --RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------------HSDQTLDVTSKD 124
RAM + + ++ +V L +C +D +
Sbjct: 122 GLRAMKWYSKPTEEDPESGTPTDWNTVVLRLEVECKWQEGGLQRAVAGETDPDKLYVGHN 181
Query: 125 LYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+Y+ D P+ F G + I+I K+R GQ + L A KGIG+DHAK
Sbjct: 182 VYAKDIEFKPIGRQAELFSSEQGKEIRSTNPDILIAKMRPGQSINLSMHAIKGIGQDHAK 241
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT------------ 227
+SP AT ++ P I D+ + + + + + P V +D T
Sbjct: 242 FSPVATASYRLMPTI----DITKPIVGPDAKKFARCFPRGVIRLDTVTETDVKQHPELEG 297
Query: 228 --GQVYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
G+ V A A T E ++ E K L I D FIF VESTG ++ +L L
Sbjct: 298 KEGEAKAVVANAMNDTVSRECLRHPEFKDKVRLGRI---RDHFIFRVESTGQWESDELFL 354
Query: 284 NAIEVLKQKLDAVR 297
++++LK K ++
Sbjct: 355 ESVKLLKIKCQRIK 368
>gi|358378075|gb|EHK15758.1| hypothetical protein TRIVIDRAFT_38208 [Trichoderma virens Gv29-8]
Length = 371
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 138/308 (44%), Gaps = 49/308 (15%)
Query: 16 ELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIP 75
EL D A F L DAS+ANA RR++IAE+PT+AI+ V IE N+SV+ DE +AHRLGLIP
Sbjct: 57 ELND--ASFSLIGIDASLANAFRRILIAEIPTLAIEDVYIENNTSVIQDEVLAHRLGLIP 114
Query: 76 LTSERAMSMRFSRDCDACDGD-----GQCEFCSVEFHLRAKCHSDQTLDVTSKD------ 124
R F + + ++ +V L C + D
Sbjct: 115 FNGGREGIHNFLKWYKKPEAGEDAYANSFDWNTVRLELNITCTVNPDASPNENDPLKAYN 174
Query: 125 ---LYSSDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARK 171
+Y+ D VP + + P D I+I KLR Q + L K
Sbjct: 175 HAHVYAKDIVFVPTGRQVEYFSGENAIAPTNPD-------ILIAKLRPKQTINLAMHMHK 227
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHINEDLMES-------------LSLEEKQSWVESSPT 218
GIG DH+K+SP AT ++ P IHI + ++ + + LE+ S
Sbjct: 228 GIGADHSKFSPVATASYRLLPLIHITKPIIGADAEKFQRCFPQGVIGLEKITREEASKSG 287
Query: 219 KVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKA 278
++ + V D+ T E ++ E GK V++ + D FIF++ESTG +
Sbjct: 288 SGYEGHAGELKAVVKDSMKDTVSREALRHPEFEGK---VKLGRRRDHFIFSIESTGQWDS 344
Query: 279 SQLVLNAI 286
+L L A+
Sbjct: 345 DELFLEAV 352
>gi|452001561|gb|EMD94020.1| hypothetical protein COCHEDRAFT_1222623 [Cochliobolus
heterostrophus C5]
Length = 376
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 45/314 (14%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-- 79
+F L D S+ANA RR++++E+PT+AI+ V I N+S++ DE +AHRLGL+PL +
Sbjct: 62 TQFSLTGIDTSVANAFRRILLSEIPTLAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDRE 121
Query: 80 --RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------------HSDQTLDVTSKD 124
RAM + + ++ +V L +C +D +
Sbjct: 122 GLRAMKWYSKPTEEDPESGTPTDWNTVVLRLEVECKWQEGGLQRAVAGETDPDKLYVGHN 181
Query: 125 LYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+Y+ D P+ F G + I+I K+R GQ + L A KGIG+DHAK
Sbjct: 182 VYAKDIEFKPIGRQAELFSSEQGKEIRSTNPDILIAKMRPGQSINLSMHAIKGIGQDHAK 241
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT------------ 227
+SP AT ++ P I D+ + + + + + P V +D T
Sbjct: 242 FSPVATASYRLMPTI----DITKPIVGPDAKKFARCFPRGVIRLDTVTETDVKQHPELEG 297
Query: 228 --GQVYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
G+ V A A T E ++ E K L I D FIF VESTG ++ +L L
Sbjct: 298 KEGEAKAVVANAMNDTVSRECLRHPEFKDKVRLGRI---RDHFIFRVESTGQWESDELFL 354
Query: 284 NAIEVLKQKLDAVR 297
++++LK K ++
Sbjct: 355 ESVKLLKIKCQRIK 368
>gi|385805508|ref|YP_005841906.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
gi|383795371|gb|AFH42454.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
Length = 281
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 148/294 (50%), Gaps = 35/294 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+K +K+++ + + D + +LRR++I EVPT+A+D V I N+SVL+DE +AHR
Sbjct: 2 KIKPINIKENFLELYIEDAPQEVLTSLRRIIIEEVPTMAVDNVLILENNSVLHDEVLAHR 61
Query: 71 LGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
LG+IPL S+RA+ R +C C CE C HL + + V + +L S D
Sbjct: 62 LGMIPLYSDRALEKYRAPEECAECTN---CENCFDILHLEVENKDEDKKVVYTGELKSED 118
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ PV F D I IV L +GQ++ L A AR G GK+H KWSP + +
Sbjct: 119 PDIYPV-FKD------------IPIVVLGKGQKIVLEAEARLGRGKEHIKWSPVSISALI 165
Query: 190 YEPEIHINEDLMESLSLEEKQSWV----ESSPTKVFDIDPNTGQVYVVDAEAYTY----D 241
PEI + + E E + E K+ ++ G++ + + + + +
Sbjct: 166 SVPEIIFSFEQCEEQESNECLKCIGEFSEELAEKMMEM--KKGKIELENFKNTSLLRFCE 223
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
D+V +K ++I E+ I VESTG++ ++ A+E+L +K +A
Sbjct: 224 DKVCRKC--------MKINYLENKKILRVESTGSLSTKLIIEKALEILNKKAEA 269
>gi|323350237|gb|EGA84384.1| Rpc40p [Saccharomyces cerevisiae VL3]
Length = 265
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 135/268 (50%), Gaps = 20/268 (7%)
Query: 41 MIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCE 100
MI+EVP++A + V N+SV+ DE +AHR+GL+PL + M D + D + +
Sbjct: 1 MISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWV--DSNLPDDEKFTD 58
Query: 101 FCSVEFHLRAKCHSDQTLDVTS---KDLYSSDHSVVPVDFVDPAGYDST--------DQQ 149
++ L KC + S K+LY++ H +P G ST
Sbjct: 59 ENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPAD 118
Query: 150 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEK 209
I++ KLR GQE+ L+A GIG DHAK+SP +T ++ P+I+I ++ + E
Sbjct: 119 PDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI----LQPIKGESA 174
Query: 210 QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFT 269
+ + + P V ID + + YV DA T EV++ E K V++ + FIF
Sbjct: 175 RRFQKCFPPGVIGIDEGSDEAYVKDARKDTVSREVLRYEEFADK---VKLGRVRNHFIFN 231
Query: 270 VESTGAIKASQLVLNAIEVLKQKLDAVR 297
VES+GA+ ++ ++ +LK K + ++
Sbjct: 232 VESSGAMTPEEIFFKSVRILKNKAEYLK 259
>gi|307352912|ref|YP_003893963.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307156145|gb|ADN35525.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 274
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 138/292 (47%), Gaps = 36/292 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ L +D A+F L+D + AN RR MI EVPT+AI+ V I N+S L DE +AHR
Sbjct: 2 EISFSRLDEDIARFTLKDATPAFANTFRRTMIGEVPTLAIEDVLIYDNNSALFDEMLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ ++ + ++ S +C +C G+G C C F L + V S DL +D
Sbjct: 62 LGLIPIKTDLSEYVKKS-EC-SCGGEG-CSSCQAIFTLSV----EGPGTVHSSDLIPADP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
PV+ P +VKL + Q++ L A A IG +HAKW P +
Sbjct: 115 RATPVNMDIP-------------VVKLEKDQKVVLEARAELNIGDEHAKWEPTLACGYKA 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE- 249
P I I++ + + VE P V + G+ V A+ D + + E
Sbjct: 162 YPVITIDD------RCDACGNCVEECPRNVLRV----GKKSVEIADGKLEDCSMCRLCEK 211
Query: 250 -----AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
+G + + F+F VES G++ +++ A+ ++K K D++
Sbjct: 212 ACMASGIGDRPAISVKPDNTRFLFVVESDGSLPVKEIMTCALGIMKDKSDSL 263
>gi|380022855|ref|XP_003695251.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1-like [Apis florea]
Length = 587
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 152/300 (50%), Gaps = 31/300 (10%)
Query: 14 IRELKDDY-AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
IRE +D+ +F+L ANA RRV+++EVPT+AI+ V I N+S++ DE +AHRLG
Sbjct: 45 IRESEDNRELEFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTSLIQDEVLAHRLG 104
Query: 73 LIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH--------SDQTLDV-TSK 123
LIPL ++ + S A D D + ++ + L+ C S +T D+ +
Sbjct: 105 LIPLRADPRLFEYPSS--TAKDQDEVSDQDTLRYELKISCTWNSQAPKDSRRTNDMYRNS 162
Query: 124 DLYSSDHSVVPVDFVDPAGYDSTDQ----QRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
++YS D VP+ T+Q + I+I K+R GQE+ A KGIGKDHAK
Sbjct: 163 NVYSRDIKWVPIGHQAELYPRGTEQLGVLENDILICKMRPGQEIHAFMHAVKGIGKDHAK 222
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSW-------VESSPTKVFDIDPNTGQVYV 232
+SP AT ++ P+I I + + ++ K + +E+ P DP++ + V
Sbjct: 223 FSPVATASYRLLPDIQIIKPVKGEMADRLKNCFSIGVIEVIENKPG-----DPDSREARV 277
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ + V + + G L I + IFT+ES G + S L + AI++LK K
Sbjct: 278 KNPRYDSCSRNVFQHEDLKGCIRLSRI---RNHIIFTIESVGTLLPSVLFVEAIKILKGK 334
>gi|402467489|gb|EJW02781.1| hypothetical protein EDEG_02821 [Edhazardia aedis USNM 41457]
Length = 244
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 102/185 (55%), Gaps = 18/185 (9%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ + E D+ L T + AN+LRRV+I+E+P+IA DL+ I+ N++VL D++IAHR
Sbjct: 2 QLTVIEQTDNVLSLRLEKTTIAFANSLRRVLISEIPSIAFDLILIKENTTVLPDDYIAHR 61
Query: 71 LGLIPL--TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
+GLIP+ T++ ++ +C G CE CS+ L + + L VTS L
Sbjct: 62 IGLIPIFHTNDPKHNLISHTECHC---QGYCESCSITCDLVQANTTSECLLVTSSSLL-- 116
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
P ++ I IVKL+R Q+L L A+ARKGI KD++KW V F
Sbjct: 117 -----------PKNFERKMFNENIPIVKLQRRQKLCLTAVARKGIAKDNSKWQVVNNVGF 165
Query: 189 MYEPE 193
Y+P+
Sbjct: 166 EYDPD 170
>gi|393219179|gb|EJD04666.1| hypothetical protein FOMMEDRAFT_80006 [Fomitiporia mediterranea
MF3/22]
Length = 387
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 155/326 (47%), Gaps = 35/326 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D ++++R ++ + L +L DAS+ANA+RR +IAEVPTIAI+ V + N+SV
Sbjct: 46 DLSAFKRSLQLNVTRLSQRSVDLDLIGVDASIANAIRRTLIAEVPTIAIESVYVWNNTSV 105
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
++DE +AHRLGL+PL + + DA D ++ F L +C
Sbjct: 106 IHDEVLAHRLGLVPLNLDPGLFEMREEGKDATD------RSTLVFKLEVECKRKAGAPAE 159
Query: 122 SK---DLYSSDHSVVPVDFVDPAGYDSTDQQ--------RGIIIVKLRRGQELRLRAIAR 170
S DLY + + +P G + Q I++ KLR GQ + + A
Sbjct: 160 SANPDDLYENHLVTAGMLRWEPQGEQADVPQLKPPGPTNPNIVLAKLRPGQVIDMECHAI 219
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV 230
K +GK+HAKWSP AT ++ P I I L + S ++ SP + I T
Sbjct: 220 KNVGKEHAKWSPVATASYRIHPHITI---LKQPPSGSARKFADCFSPGVIKVIGEGTA-- 274
Query: 231 YVVDAEAYTYDDEVIKKAEAMGK--------PGLVEIYAKEDSFIFTVESTGAIKASQLV 282
+EA D++ +++ E+M + G V++ D F+F +ES G L
Sbjct: 275 ----SEAVEVDEKRVRE-ESMSREVFRHSEFEGCVKLGRVRDWFLFNIESEGPYAPRDLF 329
Query: 283 LNAIEVLKQKLDAVRLSEDTVEADDQ 308
AI VL+ ++ ++ + + + + ++
Sbjct: 330 PAAIRVLRARVSTLKRAAEALASGEE 355
>gi|346464743|gb|AEO32216.1| hypothetical protein [Amblyomma maculatum]
Length = 340
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 152/307 (49%), Gaps = 28/307 (9%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D S ++F K V I L D +F++ + ++ANA+RR+++AEVPT+A D V + N
Sbjct: 35 DSWSIRKFAKNFKVGIVSLDDTTMEFDMIGLNPAIANAIRRILLAEVPTMAPDKVYLYNN 94
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
+S++ DE +AHR+GL+P + R R S G+ +VEF L+ KC +
Sbjct: 95 TSIVQDEVLAHRIGLVPFNIDPRMFEYRES-------GNEGSPEDTVEFELKVKCTKNPH 147
Query: 118 L--DVTSKDLYSSDHSV-------VPV-DFVDPAGYDSTDQ-QRGIIIVKLRRGQELRLR 166
D T D DH V +P+ V+ G II+ KLR GQE+ L+
Sbjct: 148 APKDATVPDELYKDHVVYTKHLKWIPLGSQVEIFGNKPPKPVHDDIILAKLRPGQEIDLK 207
Query: 167 AIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN 226
KG G+ HAK+SP AT ++ PEI + +++ + E+ S+ D P+
Sbjct: 208 LHCLKGTGQVHAKFSPVATASYRLLPEIRLLRPVLDEQA--ERLQTCFSNGVIELDETPD 265
Query: 227 TGQV-YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNA 285
+V V +A T V + + VE+ +D FIF+VESTGA LV A
Sbjct: 266 GHKVARVANARIDTCSRNVFRFDDLKDA---VELTRVKDHFIFSVESTGAYAPDLLVTEA 322
Query: 286 IEVLKQK 292
++VL K
Sbjct: 323 VKVLMAK 329
>gi|452979634|gb|EME79396.1| hypothetical protein MYCFIDRAFT_216428 [Pseudocercospora fijiensis
CIRAD86]
Length = 392
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 158/342 (46%), Gaps = 55/342 (16%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ R+ + + F L DAS+ANA RR+++AE+PT+AI+ V I N+S++ DE +AHR
Sbjct: 55 QVEFRQNEQFNSAFSLIGVDASIANAYRRILLAELPTLAIEDVFIFDNTSIIQDEVLAHR 114
Query: 71 LGLIPLT---------------------SERAMSMRFSRDCDACDGDGQCEFCSVEFHLR 109
LGLIPLT + RA+ + + +F +V L
Sbjct: 115 LGLIPLTGGKDGLRWMHWFKKPPPQSDYAARALWEQEQEESGDTSSSVNSDFNTVVMTLN 174
Query: 110 AKCH-------------------SDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQR 150
C +D T + ++Y+ + P + + + R
Sbjct: 175 VTCRWKNKEEDGIDGKKVAQEGSTDPTEKYVNSNVYAHQMTFEPQGKLQREYFGGENAIR 234
Query: 151 ----GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSL 206
I+I KLR GQ + +R KGIG DHAK+SP AT ++ P+I I + ++ +
Sbjct: 235 PVNPNILIAKLRPGQTINVRMHCCKGIGADHAKFSPVATASYRLLPDIKITKPIVGA--- 291
Query: 207 EEKQSWVESSPTKVF----DIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAK 262
+ +++ + P V D + + + V+D T E ++ E K L I
Sbjct: 292 -DAKAFQKCFPRGVIGLEDDKESGSKKAVVIDPYKDTVSRECLRYDEFKDKVKLGRI--- 347
Query: 263 EDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
D FIF++ESTG + +L ++++ +LK K + + +VE
Sbjct: 348 RDHFIFSIESTGQFDSDELFIDSVRLLKAKAERFKRHLQSVE 389
>gi|345492750|ref|XP_003426918.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Nasonia vitripennis]
Length = 345
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 147/282 (52%), Gaps = 20/282 (7%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F++ A++ANA RR+M++EVP++AI+ V + N+S++ DE +AHRLGL+PL ++ +
Sbjct: 59 FDIIGCSAALANAYRRIMLSEVPSMAIEKVYMINNTSLIQDEVLAHRLGLLPLKADPRLF 118
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK---DLYSSDHSVVPVDFVDP 140
S+ D + + ++ + ++A C + S+ D+Y ++ +P
Sbjct: 119 EYPSK--TTADEEEVSDQDTLRYEIKAICKWNPHAPKDSRRPDDIYCGNNVYSKDIKWNP 176
Query: 141 AG-----YDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
G Y ++Q G I+I K+R QE+ A KGIGKDHAK+SP AT T+
Sbjct: 177 IGRQNELYPDGEKQFGMIADDILICKMRPNQEIHAYMHAVKGIGKDHAKFSPVATATYRL 236
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
PEI I + + + K + SP + ++ G+ V Y + + +
Sbjct: 237 LPEIQIIKPVRGEAAERFKSCF---SPGVIEIVETTKGKEARVKNARYDSCSRNVFRHDD 293
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ V++ D FIFTVES GA+ +S L + A++VLK+K
Sbjct: 294 LK--DCVQLGRVPDHFIFTVESVGALPSSVLFIEAVKVLKKK 333
>gi|398398399|ref|XP_003852657.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
gi|339472538|gb|EGP87633.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
Length = 474
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 156/343 (45%), Gaps = 59/343 (17%)
Query: 2 DGASYQRFP---KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D + +RF KV+ K F L DAS+ANA RR++++E+PT+AI+ V + N
Sbjct: 43 DSWNLERFKQNLKVEFHHNKTYDTAFSLVGVDASIANAFRRILLSELPTLAIEDVFMFDN 102
Query: 59 SSVLNDEFIAHRLGLIPLTSERA--MSMRFSRDCDACD--------------------GD 96
+S++ DE + HRLGLIPLT R +R+ R D
Sbjct: 103 TSIIQDEVLCHRLGLIPLTGGREGLQWLRWYRKPPPKDDYAALAAWEAEKESGGIDPASS 162
Query: 97 GQCEFCSVEFHLRAKCH-------------------SDQTLDVTSKDLYSSDHSVVPVDF 137
++ ++ L +C +D + +Y+ + +P
Sbjct: 163 VPSDYNTIVMELNVECRWATQEEDGRDGKQLAKDGSTDPKEKYVNSSVYAHQFTFIPQGN 222
Query: 138 VDPAGYDSTDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPE 193
P ++ + R I+I KLR GQ + LR KGIG DHAK+SP AT ++ P+
Sbjct: 223 HQPTLFEGENAIRPVNPDILIAKLRPGQRIHLRVHCIKGIGADHAKFSPVATASYRLLPQ 282
Query: 194 IHINEDLMESLSLEEKQSWVESSPTKVFDI--DPNTGQVYVVDAEAY--TYDDEVIKKAE 249
I D+ ++ + +++ + P V I D G+ V + + T E ++ E
Sbjct: 283 I----DIKSPITGQSAKAFQKCFPRGVIGIEHDEALGEKKAVVKDPFKDTVSRECLRYDE 338
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
K L I D FIF++ESTG +++ +L L+++ +LK K
Sbjct: 339 FKNKVKLGRI---RDHFIFSIESTGQLESDELFLDSVRLLKAK 378
>gi|302655859|ref|XP_003019711.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
gi|291183453|gb|EFE39066.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
Length = 388
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 158/335 (47%), Gaps = 48/335 (14%)
Query: 10 PKVKIRELKDDY-------AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
P K++ LK ++ A F L DA++ANA RR+++AE+P +AI+ V I+ N+SV+
Sbjct: 53 PPWKLKGLKIEFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVI 112
Query: 63 NDEFIAHRLGLIPLTS--ERAMSMRF---SRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
DE +AHRLGLIPL E +R+ ++ D G + ++ L +C ++
Sbjct: 113 QDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTKNRN 172
Query: 118 LDVTSKD---LYSSDHSVVPVDFVDPAGY-------DSTDQ--QRGIIIVKLRRGQELRL 165
+D LY++ H +P G D Q I++ KLR GQ++ +
Sbjct: 173 AAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQPCNPDILLAKLRPGQKIDI 232
Query: 166 RAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDP 225
KGIG DHAK+SP AT ++ P+I I ++ + +++ + P V I+
Sbjct: 233 EMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIK----FASCFPRGVIGIEN 288
Query: 226 NTG-----------------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIF 268
T + VVD T E ++ E K V++ D FIF
Sbjct: 289 VTAAEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLRHDEFKDK---VKLGRVRDHFIF 345
Query: 269 TVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTV 303
+ESTG + + L +I+VLK K ++ + T+
Sbjct: 346 NIESTGQFNSDLMFLESIKVLKLKCQRLKRNVATL 380
>gi|84994468|ref|XP_951956.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide
[Theileria annulata strain Ankara]
gi|65302117|emb|CAI74224.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide,
putative [Theileria annulata]
Length = 329
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 152/293 (51%), Gaps = 27/293 (9%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++K + +++ E+ D S ANALRR++I+EVPT+A++ V+I N+ V+ DE +AHR
Sbjct: 34 QIKFLKKTPEFSVVEIAGLDVSFANALRRILISEVPTLAVETVQIYQNTGVVQDELLAHR 93
Query: 71 LGLIPLTSERAM-SMRFSRDCDACDGDGQCEFC----SVEFHLRAKCHS-DQTLDVTSKD 124
LGLIP + + + + + S + C D CE SV F L+ K + DQ+ ++
Sbjct: 94 LGLIPFSIDPDLFNFKSSSKNNHCFAD--CEEINDKNSVCFKLKVKYNKFDQSEYLS--- 148
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQR---GIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+YS+D VP+ + + I+I KL GQE+ L KGIGK H+KWS
Sbjct: 149 IYSNDLKWVPLSNNQEIMFKDNPPKPVYGDILITKLGPGQEIDLNMYLEKGIGKVHSKWS 208
Query: 182 PAATVTFMYEPEIHINEDLM------ESLSLEEKQSWVESSPTKVFDIDPNTGQVYV--- 232
P +T + + P+I N D++ L+ EK++ + P VF + G+V +
Sbjct: 209 PVSTAVYKFMPKIVYNVDILLEFSADHKLTATEKKNLPKICPMNVFSY--SKGEVNIENP 266
Query: 233 VDAEAYTYDDEVIKKAEAMGK--PGLVEIYAKEDSFIFTVESTGAIKASQLVL 283
++ + E+ K + K ++ + + F ++ES+G++ + L+L
Sbjct: 267 LNCTSCRRCLELYPKKIIISKLTNHIICTFQYFNHFSVSIESSGSVTSYDLLL 319
>gi|407929549|gb|EKG22366.1| DNA-directed RNA polymerase 30-40kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 377
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 148/319 (46%), Gaps = 57/319 (17%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT-SER 80
++F L DA++ANA RR++IAE+PT+AI+ V I N+S++ DE +AHRLG+IPL S +
Sbjct: 65 SQFSLIGVDAAIANAFRRILIAELPTLAIEDVYILKNTSIIQDEVLAHRLGMIPLKGSPK 124
Query: 81 AM-SMRFSRDCDACDGDG---------------QCEFCSVEFHLRAKCHSDQTLDVTSKD 124
A+ +M + + ++ + + QCE+ + K +D +
Sbjct: 125 AIQNMTWYKKPESGEAEQGAHTDYNTIVLELNVQCEWHPDGREMAKKGETDPKKLFINSS 184
Query: 125 LYSSDHSVVPV----------DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIG 174
+Y+ +P + + P D I+I KLR GQ + L KGIG
Sbjct: 185 VYAHQIKFIPTGRQAELFAGENAIQPVNPD-------ILIAKLRPGQSINLSMHCIKGIG 237
Query: 175 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT------- 227
DHAK+SP AT T+ P I I + ++ + + + P V P T
Sbjct: 238 SDHAKFSPVATATYRLLPHIQITQPILGA----HAEKFARCFPPGVIAQVPVTDEEAASD 293
Query: 228 -------GQVYVVDAEAY--TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKA 278
G+ V A + T EV++ E K V++ D FIF VESTG +
Sbjct: 294 PALAGHAGEKRAVVANPFNDTVTREVLRHDEFKDK---VKLGRVRDHFIFNVESTGQFDS 350
Query: 279 SQLVLNAIEVLKQKLDAVR 297
+L + +++ LK K ++
Sbjct: 351 DELFIQSVKALKFKCQVMK 369
>gi|193704512|ref|XP_001945905.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Acyrthosiphon pisum]
Length = 325
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 147/296 (49%), Gaps = 25/296 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I D+ +F+L D ++AN+LRRV+I+EVP++AI+ V I N+S + DE +AHR
Sbjct: 33 KINIISRSDNDLEFDLVGIDVAVANSLRRVIISEVPSMAIEKVHIYQNTSYILDEILAHR 92
Query: 71 LGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
LGLIPL ++ R M+ + + + D S+ + ++ KC + K S
Sbjct: 93 LGLIPLKADPRQFKMKEDENSEPNEHD------SLVYEMKIKCTKKDLDALAHKQFISFP 146
Query: 130 HSVVPVDFVDPAGYDS---TDQQRGII-----IVKLRRGQELRLRAIARKGIGKDHAKWS 181
+ ++ P G T++ GII I KLR GQE+ L+ A KGI KDHAK+
Sbjct: 147 VYAKHIKWL-PLGNQKDIFTEKDVGIISDDILIAKLRPGQEIELKMFAVKGIPKDHAKFQ 205
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV--YVVDAEAYT 239
T + P I L++ + + P V + G + +V D+
Sbjct: 206 SVCTAWYRMMPNIK----LLDEIKGNDAVLLQSCFPKGVIGLKSVKGVLIAFVEDSRKDN 261
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
V + + K L +I +D FIFT+ES GA+ S + L A+ +L +K+++
Sbjct: 262 SSRNVFRYKQFDNKILLSKI---QDHFIFTIESVGAMDPSLIFLEALNILTRKVNS 314
>gi|154151761|ref|YP_001405379.1| DNA-directed RNA polymerase subunit D [Methanoregula boonei 6A8]
gi|154000313|gb|ABS56736.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
Length = 276
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 132/288 (45%), Gaps = 36/288 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++ L D A+F L AN+ RR MI EVPT+AI+ V I N+S L DE +AHR
Sbjct: 2 EIEFASLDDTVARFTLSGAQPGFANSFRRAMIGEVPTLAIEDVRIYDNTSALFDEMLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ ++ S DC +C G G C C+V + L + VTS DL D
Sbjct: 62 LGLIPIRTDLT-SYSTQGDC-SCGGAG-CPSCTVTYTLSV----EGPKLVTSSDLIPQDP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
PV I IVKL +GQ+L + A A GK HAKW P +
Sbjct: 115 QAAPVS-------------DNIPIVKLIKGQKLVIEARAVLNKGKVHAKWQPTLVCGYKN 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE- 249
P I I S + + V+ P + + +V E D + K E
Sbjct: 162 YPVITI------SPTCDACGMCVDECPRTILALKGKKVEVI----EGRLPDCSMCKLCER 211
Query: 250 -----AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+G+ + I A+ D +IF+VES G++ ++++ A+ +K +
Sbjct: 212 ACLASGIGEEPAIRISAEPDRYIFSVESDGSLPVKEIMVQALGFVKAQ 259
>gi|258576271|ref|XP_002542317.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
gi|237902583|gb|EEP76984.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
Length = 378
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 141/306 (46%), Gaps = 42/306 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-- 79
A F L DA++ANA RR++IAE+P++AI+ V I N+SV++DE ++HRLGL+PL
Sbjct: 60 ASFSLIGVDAAIANAFRRILIAEIPSLAIEFVFIHNNTSVIHDEVLSHRLGLVPLKGSLD 119
Query: 80 --RAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVV 133
M+ R ++ + + ++ L A+C + +D LY++ H
Sbjct: 120 GINWMTWFRMPQEGEEDSASVASDHNTIVLKLNAECTKNPNASPDEEDPTVLYNNAHVYA 179
Query: 134 PVDFVDPAGYDST----------DQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+P G +T I++ KLR GQ++ + KGIG+DHAK+SP
Sbjct: 180 RDIVFEPVGRQTTFFSGPDGEIQPSNPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPV 239
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--------------- 228
AT ++ P+I I ++ ++ + P V I+ T
Sbjct: 240 ATASYRLLPDIQITRPILG----DDAVKFANCFPPGVIGIEHVTADEAEQKGTGYEGHKG 295
Query: 229 --QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
+ VVD T E ++ E K L I D FIF +ES G + L + ++
Sbjct: 296 EKKAVVVDPFKDTVSRECLRHEEFKDKVKLGRI---RDHFIFNIESVGQFNSDLLFIESV 352
Query: 287 EVLKQK 292
+VL+ K
Sbjct: 353 KVLRLK 358
>gi|375083505|ref|ZP_09730525.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
gi|374741832|gb|EHR78250.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
Length = 258
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 136/287 (47%), Gaps = 44/287 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI E +D+ +F L D + ANALRR +I EVPT A+D VE N S L DE IAHR
Sbjct: 2 QIKILEKRDNAIRFILEGVDIAFANALRRTIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPLT+ S RF D D ++ + ++ + S DL S D
Sbjct: 62 LALIPLTTP---SDRFELDALELD----------DYTVTLGLEAEGPAIIYSGDLKSDDP 108
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV I IVKL GQ L A A+ G GKDHAKW P + Y
Sbjct: 109 DVKPV-------------TPDIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQPGFAY-YKY 154
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
++H+++++ ++E + K I+ N ++ + ++ E
Sbjct: 155 LTKMHVSKEVPNWEKIKELAA------RKKLPIEENENELIITTLTSFYLPREF------ 202
Query: 251 MGKPGLVEIYAKE---DSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
P L + +E ++F+FTVES G + ++V A+++L +K D
Sbjct: 203 --DPYLGDKIKEEVVPNTFVFTVESNGELPVEEIVALALKILMRKSD 247
>gi|108707637|gb|ABF95432.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 352
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 120/234 (51%), Gaps = 30/234 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV + L +D +F++ DASMANA RR++IAEVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSKDL-YSS 128
LGLIPL ++ + S + D E ++ + L C L V S DL +
Sbjct: 133 LGLIPLDADPRLFEYISEN------DVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 186
Query: 129 DHSVVPVDFVDPAG-----YDSTDQQ-------------RGIIIVKLRRGQELRLRAIAR 170
+ S +P+ +G Y S Q + I I +L GQ + L A
Sbjct: 187 EGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAV 246
Query: 171 KGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
KGIGK HAKWSP AT + PE+ + E++ ++ + + V P VFDI+
Sbjct: 247 KGIGKVHAKWSPVATAWYRMLPEVVLREEIKDA----DAEMLVAKCPVNVFDIE 296
>gi|315044489|ref|XP_003171620.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
gi|311343963|gb|EFR03166.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
Length = 380
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 148/310 (47%), Gaps = 41/310 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--E 79
A F L DA++ANA RR+++AE+P +AI+ V I+ N+SV+ DE +AHRLGLIPL E
Sbjct: 64 ASFSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLE 123
Query: 80 RAMSMRF---SRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD---LYSSDHSVV 133
+R+ ++ D G + ++ L +C +++ +D LY++ H
Sbjct: 124 GLNWLRWFKAPKEGDPDSGSTHEDSNTIVLRLVKECTKNRSAPPGEEDPTILYNNAHIYA 183
Query: 134 PVDFVDPAG----YDSTDQ-----QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
+P G Y D I++ KLR GQ++ + KGIG DHAK+SP A
Sbjct: 184 KDLVFEPQGRQEKYFHGDGAIQSCNPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVA 243
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG---------------- 228
T ++ P+I I ++ + +++ + P V ++ T
Sbjct: 244 TASYRLLPDIKILRPILGNDAIK----FASCFPRGVVAVENVTAAEAAQVGSGYEGKEGE 299
Query: 229 -QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIE 287
+ VVD T E ++ E K V++ D FIF +ESTG + + L +I+
Sbjct: 300 KKAVVVDPFKDTVSRECLRHDEFKDK---VKLGRVRDHFIFNIESTGQFNSDHMFLESIK 356
Query: 288 VLKQKLDAVR 297
VLK K ++
Sbjct: 357 VLKLKCQRLK 366
>gi|48478294|ref|YP_024000.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
gi|55976419|sp|Q6KZP5.1|RPOD_PICTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|48430942|gb|AAT43807.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
Length = 271
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 147/295 (49%), Gaps = 45/295 (15%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLV------------EIEVNSSV 61
I ELKD+Y KF + ++AN++RR +I ++P +AI+ V + +S
Sbjct: 4 IIELKDNYIKFSISGITPAIANSIRRTLINDIPKLAIENVVFHHGEIRDSEGNVYDSSLP 63
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
L DE +A RLGLIPL ++ + M F C +C+G+G C+ C+V++ + +
Sbjct: 64 LFDEVVALRLGLIPLKTD--LKMNFRDQC-SCNGEG-CDLCTVKYSINK---------LG 110
Query: 122 SKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
D++SSD ++P++ D D I IVKL++GQ + + A G GKDHAKW
Sbjct: 111 PADVFSSD--LIPINNPDLKPVDPM-----IPIVKLKKGQAMLVTCEAIMGRGKDHAKWQ 163
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
+ V++ Y E IN++ +E+ S + + P V I N ++ D Y
Sbjct: 164 VTSGVSYKYHREFKINKNELENWSF-----YKDKCPKSV--ISENENEITFTDDVECRYL 216
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
++ + V I + FIF E+ G++ A + + A++ LK++ + +
Sbjct: 217 QQLFDEKSG------VTITEDDTKFIFQFETDGSLTAIETLDYALKRLKERFNNL 265
>gi|242398333|ref|YP_002993757.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
gi|242264726|gb|ACS89408.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
Length = 271
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 138/295 (46%), Gaps = 60/295 (20%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI E +DD +F L D + ANALRR +I EVPT AID VE N S L DE IAHR
Sbjct: 15 QIKILEKRDDAIRFILEGMDIAFANALRRTIIGEVPTFAIDEVEFYENDSALFDEIIAHR 74
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPLT+ RF + + E +V L A+ + V S DL S D
Sbjct: 75 LSLIPLTTPFD---RFELES------MELEDYTVTLSLEAEGPA----IVYSGDLKSDDP 121
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV+ I IVKL GQ L A A+ G GKDHAKW P + Y
Sbjct: 122 DVKPVN-------------PNIPIVKLAEGQRLVFNAYAKMGKGKDHAKWQPGFA-HYKY 167
Query: 191 EPEIHINEDL-----------MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
E+H+++++ + L +EE ++ ++ T + + + E
Sbjct: 168 LTEVHVSKEVPKWEDIKKAAKKKKLPVEETEN----------ELIITTIRSFYIPREFEQ 217
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
Y E IK+ ++F+FTVES G + +++ A+++L +K D
Sbjct: 218 YIGEKIKEE------------VVPNTFVFTVESNGELPVEEMISVALKILMRKSD 260
>gi|399218932|emb|CCF75819.1| unnamed protein product [Babesia microti strain RI]
Length = 318
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 42/302 (13%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+K + + D++ E++ D S NA+RR++IAEVP++AI+ V + N+ +++D+ +AHRL
Sbjct: 38 IKFLKREFDHSIIEIKGLDVSFVNAIRRILIAEVPSLAIETVMVWQNTGLIHDDVLAHRL 97
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQ---CEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
L+P F+ D + + G E SV F L+ H ++ + +Y+S
Sbjct: 98 ALVP----------FNVDPEEINYRGHENLNESNSVCFELKVA-HDANCIE-KYQSVYTS 145
Query: 129 DHSVVPVDFVDPAGYDSTDQQRG----------IIIVKLRRGQELRLRAIARKGIGKDHA 178
+P+ D ++ G I++ KL GQ++ L+A KGIG+ HA
Sbjct: 146 QLKWIPLG-------DEQHKRLGKNQPRPLFEDILLTKLAPGQQIELKAYLEKGIGRTHA 198
Query: 179 KWSPAATVTFMYEPEI---HINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA 235
KWS ++ T+ + P I D+ L+ +E + V + P VF +D + G V V D
Sbjct: 199 KWSIVSSATYRFYPHIGSHSTYSDISSQLTRDESKELVATCPMNVFALD-HKGNVIVEDP 257
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
T I++ + V I + FIF++E+ G I + + ++ +LK K D
Sbjct: 258 LKCTSCRACIERFKQ------VTITKVTNHFIFSIETCGPISSWDAFVKSVNILKNKGDK 311
Query: 296 VR 297
++
Sbjct: 312 LK 313
>gi|303277947|ref|XP_003058267.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460924|gb|EEH58218.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 410
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 155/345 (44%), Gaps = 77/345 (22%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+++ L D+ +FE++ ++ANA RR++IAEVPT+AI+ V + N+SV+ DE AHR
Sbjct: 80 KLEVTHLDDEKVEFEMQGLSPAIANAFRRILIAEVPTMAIEKVFMVNNTSVIQDEVFAHR 139
Query: 71 LGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL---- 125
LGLIP+ ++ R +R +GD E ++ F + KC ++T D T L
Sbjct: 140 LGLIPIRADPRLFDLR-------GEGDTPTEKNTIVFKMCVKCTREKTTDGTKGALINDK 192
Query: 126 -------YSSDHSVVPVDFVDPAGYDSTDQ---------------------QRG------ 151
+ + S +P D S DQ + G
Sbjct: 193 VYTDSLVWLPNGSELPPDEETKFTQFSCDQGEYLKKRNKESKELGEKEYFNRNGKDPNVI 252
Query: 152 ------IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI------NED 199
I++VK+ GQE+ L A KG GK+HAKWSP T + P++ ED
Sbjct: 253 STVHDDILLVKMVAGQEIELEAHCTKGDGKEHAKWSPVGTTWYRMVPQVTFPSGPLTGED 312
Query: 200 ----LMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM-GKP 254
+ E ++ + E G V A+ + +++ A+ G+P
Sbjct: 313 ADVFMRECADFDDAHACYE-----------RVGSDRRVVAKNERGCEFCVERVRALSGEP 361
Query: 255 GL---VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
G V++ K+D FIFTVESTG + + A+ VL K +V
Sbjct: 362 GWEEKVQLLKKKDHFIFTVESTGQMPPELIFKEAVNVLASKCQSV 406
>gi|327400272|ref|YP_004341111.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
gi|327315780|gb|AEA46396.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
Length = 261
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 131/280 (46%), Gaps = 51/280 (18%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F LRD + AN+ RR M + VPT+A+D V++ +N+S L DE +AHR+GLIPL +
Sbjct: 13 AVFILRDAPIAFANSFRRAMKSLVPTMAVDYVDVYLNTSYLYDEILAHRIGLIPLKTNLE 72
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
+C +C G+G C C V L + + V S D S D VPV
Sbjct: 73 -KFNMPDEC-SCGGEG-CPNCQVSLRL----NVEGPKLVYSGDFVSDDPETVPV------ 119
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN---- 197
YD+ I +V+L +GQ+L + A+AR G GK+H+K+ P + + P I I+
Sbjct: 120 -YDN------IPVVELYKGQQLMIEAVARLGTGKEHSKYQPVSICAYKVIPRIEISGECN 172
Query: 198 --EDLMESLS---LEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMG 252
D + + S LE K +E + V V EA +D
Sbjct: 173 GCGDCVNACSRNVLEAKDGKIEVK--NILSCSMCMECVNVCTEEAIKVED---------- 220
Query: 253 KPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ F+FTVE G++ ++ A+E+LK+K
Sbjct: 221 ----------TNDFLFTVEGVGSLPVRTVMRKALEILKKK 250
>gi|327297236|ref|XP_003233312.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464618|gb|EGD90071.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 380
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 160/336 (47%), Gaps = 44/336 (13%)
Query: 5 SYQRFPK-VKIRELKDDY--AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
S RF + +KI K+D A F L DA++ANA RR+++AE+P +AI+ V I+ N+SV
Sbjct: 44 SIDRFSEGLKIEFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSV 103
Query: 62 LNDEFIAHRLGLIPLTS--ERAMSMRF---SRDCDACDGDGQCEFCSVEFHLRAKCHSDQ 116
+ DE +AHRLGLIPL E +R+ ++ D G + ++ L +C ++
Sbjct: 104 IQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTKNR 163
Query: 117 TLDVTSKD---LYSSDHSVVPVDFVDPAGY-------DSTDQ--QRGIIIVKLRRGQELR 164
+D LY++ H +P G D Q I++ KLR GQ++
Sbjct: 164 NAAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQPCNPDILLAKLRPGQKID 223
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
+ KGIG DHAK+SP AT ++ P+I I ++ + +++ + P V I+
Sbjct: 224 IEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIK----FASCFPRGVIGIE 279
Query: 225 PNTG-----------------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFI 267
T + VVD T E ++ E K V++ D FI
Sbjct: 280 NVTAVEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLRHDEFKDK---VKLGRVRDHFI 336
Query: 268 FTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTV 303
F +ESTG + + L +I++LK K ++ + T+
Sbjct: 337 FNIESTGQFNSDLMFLESIKILKLKCQRLKRNVATL 372
>gi|302511159|ref|XP_003017531.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
gi|291181102|gb|EFE36886.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
Length = 362
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 158/336 (47%), Gaps = 48/336 (14%)
Query: 9 FPKVKIRELKDDY-------AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
P K++ LK ++ A F L DA++ANA RR+++AE+P +AI+ V I+ N+SV
Sbjct: 26 LPPWKLKGLKIEFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSV 85
Query: 62 LNDEFIAHRLGLIPLTS--ERAMSMRF---SRDCDACDGDGQCEFCSVEFHLRAKCHSDQ 116
+ DE +AHRLGLIPL E +R+ ++ D G + ++ L +C ++
Sbjct: 86 IQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTKNR 145
Query: 117 TLDVTSKD---LYSSDHSVVPVDFVDPAG-YDSTDQQRGII--------IVKLRRGQELR 164
+D LY++ H +P G + G+I + KLR GQ++
Sbjct: 146 NSAPDEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQPCNPDTLLAKLRPGQKID 205
Query: 165 LRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
+ KGIG DHAK+SP AT ++ P+I I ++ + +++ + P V I+
Sbjct: 206 IEMHCIKGIGADHAKFSPVATASYRLLPDIKILRPILGNDAIK----FASCFPRGVIGIE 261
Query: 225 PNTG-----------------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFI 267
T + VVD T E ++ E K V++ D FI
Sbjct: 262 NVTAAEAAQVGSGYEGKEGEKKAVVVDPFKDTVSRECLRHDEFKDK---VKLGRVRDHFI 318
Query: 268 FTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTV 303
F +ESTG + + L +I+VLK K ++ + T+
Sbjct: 319 FNIESTGQFNSDLMFLESIKVLKLKCQRLKRNVATL 354
>gi|320165910|gb|EFW42809.1| polymerase I polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 414
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 31/289 (10%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAM 82
F++ DA++ANA RR++IAEVPT+AI+ V N+S+++DE +AHRLGL+P+ ++ R
Sbjct: 126 FDMVGVDAAIANAFRRILIAEVPTMAIETVFFTNNTSIIHDEALAHRLGLVPIRADPRYF 185
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCH---------SDQTLDVTSKDLYSSDHSVV 133
R + D A D + ++ F L KC +D T + + SSD V
Sbjct: 186 ETRDTPDTQATDRN------TLVFTLDVKCTKNPHASPNATDDTEKYINSRVLSSDIVWV 239
Query: 134 P-----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
P F D D I+I KLR GQ + K IG+DHAK+SP T ++
Sbjct: 240 PKGDQEAQFQDAPIAPVHDD---ILIAKLRPGQAVACEMHCIKSIGRDHAKFSPVGTASY 296
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN-TGQVYVVDAEAYTYDDEVIKK 247
PEI + + + ++ + SP + + N YV+DA T E+ +
Sbjct: 297 RLLPEIILTRPVTGDDAYLLQKCF---SPGTIGVRNENGVPTAYVIDARRDTCSREIFRH 353
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
V++ D F+F++ESTGA+ L+ ++ LK K + +
Sbjct: 354 ERLASA---VKMRRVRDHFLFSIESTGALPPGDLLFESVLKLKSKCELI 399
>gi|305662634|ref|YP_003858922.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
gi|304377203|gb|ADM27042.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
Length = 281
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 134/302 (44%), Gaps = 35/302 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+ +R ++ + + + NALRR +A+VPT A+D V + +N+S + DE +AHR
Sbjct: 2 NINVRRWSNEIIEIAISGVPLPLLNALRRYALAKVPTYAVDEVMVVINTSHMFDEMLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQ----------CEFCSVEFHLRAKCHSDQTLDV 120
+ +IPL SE A+ D D C G CE C V L A D V
Sbjct: 62 IAMIPLRSEEALERIKGLDIDVCYKCGSDSEDKPPSDVCEKCYVHMFLEAV-AEDSEYTV 120
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
S D+ S D V PV I IV L GQ + L AR G G +H KW
Sbjct: 121 YSSDIKSEDEFVKPV-------------YGNIPIVILSPGQRISLELRARVGRGIEHIKW 167
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
SPA Y +I I+EDL + +E P V + N QV Y
Sbjct: 168 SPATIAVTRYVADIRISEDLCNLC-----KKCIEVCPKNVLTVYQNRIQV------KDKY 216
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
+ + K+ +++ +++ +I +ES+GA++ ++ +I +L +L+ + S
Sbjct: 217 ECILCKQCMYACPTKAIDVSYRDNEYILVIESSGALEPETILRESIGILLNELEIISKSI 276
Query: 301 DT 302
D+
Sbjct: 277 DS 278
>gi|291396258|ref|XP_002714740.1| PREDICTED: RNA polymerase I subunit [Oryctolagus cuniculus]
Length = 358
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 46/330 (13%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEV------------PTIA 49
D +++ +V + + ++ +F++ DA++ANA RR+++AEV PT+A
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVSAGPVTAGAWGMPTMA 100
Query: 50 IDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHL 108
++ V + N+S++ DE +AHRLGLIP+ ++ R R D D E +++F L
Sbjct: 101 VEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD------DEGTEIDTLQFRL 154
Query: 109 RAKC---------HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKL 157
+ +C SD + +Y+ + VP+ + T + I+I +L
Sbjct: 155 QVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQL 214
Query: 158 RRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSP 217
R GQE+ L KGIGKDHAK+SP AT ++ P+I L+ + E + +
Sbjct: 215 RPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDI----TLLAPIEGEAAEELSQCFS 270
Query: 218 TKVFDIDPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGA 275
V ++ G+ V + T+ E+ + E + K LV + D +IF+VESTG
Sbjct: 271 PGVIEVQEVQGKKVARVANPRLDTFSREIFRN-EKLKK--LVRLARVRDHYIFSVESTGV 327
Query: 276 IKASQLVLNAIEVLKQK-------LDAVRL 298
+ LV AI+VL K LDAV++
Sbjct: 328 LPPDVLVSEAIKVLMGKCRRFLDELDAVQM 357
>gi|326475646|gb|EGD99655.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
gi|326485520|gb|EGE09530.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Trichophyton
equinum CBS 127.97]
Length = 380
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 43/328 (13%)
Query: 12 VKIRELKDDY--AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
+KI K+D A F L DA++ANA RR+++AE+P +AI+ V I+ N+SV+ DE +AH
Sbjct: 52 LKIEFHKNDPLEASFSLIGVDAAIANAFRRILLAEIPALAIEYVYIQNNTSVIQDEVLAH 111
Query: 70 RLGLIPLTS--ERAMSMRF---SRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
RLGLIPL E +R+ ++ D G + ++ L +C ++ +D
Sbjct: 112 RLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSNTIVLRLVKECTKNRNAAPDEED 171
Query: 125 ---LYSSDHSVVPVDFVDPAGY-------DSTDQ--QRGIIIVKLRRGQELRLRAIARKG 172
LY++ H +P G D Q I++ KLR GQ++ + KG
Sbjct: 172 PTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQPCNPDILLAKLRPGQKIDIEMHCIKG 231
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG---- 228
IG DHAK+SP AT ++ P+I I ++ + +++ + P V I+ T
Sbjct: 232 IGADHAKFSPVATASYRLLPDIKILRPILGNDAVK----FASCFPRGVIGIENVTAAEAA 287
Query: 229 -------------QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGA 275
+ VVD T E ++ E K V++ D FIF +ESTG
Sbjct: 288 QVGSGYEGKEGEKKAVVVDPFKDTVSRECLRHDEFKDK---VKLGRVRDHFIFNIESTGQ 344
Query: 276 IKASQLVLNAIEVLKQKLDAVRLSEDTV 303
+ + L +I+VLK K ++ + T+
Sbjct: 345 FNSDLMFLESIKVLKLKCQRLKRNVATL 372
>gi|85690991|ref|XP_965895.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi GB-M1]
gi|19068462|emb|CAD24930.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329785|gb|AGE96054.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 305
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 148/289 (51%), Gaps = 25/289 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I E + +F+L + D S+ANALRR++ +EVPT+A+ + ++ N SV DEFIAHR
Sbjct: 31 EIRITEYSSEKLEFDLINVDCSIANALRRILSSEVPTMAVRDIFLKENESVFPDEFIAHR 90
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PL + M F+ G+ E S+ F L + S+ L+V YS D
Sbjct: 91 LGLVPLEVDPEM-FEFA-------GEELDERNSLRFTLDVRNESEGVLNV-----YSDDI 137
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
PV D R +++ +L RGQ++ + K +GK HAKWSP T+
Sbjct: 138 RWNPVGSQREIFRDVKFSSR-VLMFRLARGQKISAELVCTKNVGKVHAKWSPVCPATYRL 196
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV--YVVDAEAYTYDDEVIKKA 248
P I I D+ + + + ++ + E V D+ P+ G++ YV + + E ++
Sbjct: 197 MPLIEIG-DIFDEDAYKLQKCFSEG----VIDVRPSDGRMKAYVSNPRLDSMSREALRHE 251
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E K + I + D F+FT+ +T + L+ A+ VL +K A+R
Sbjct: 252 EFKDK---IFIGRRSDYFLFTI-NTVFLDPLYLLEKAVSVLIEKSRALR 296
>gi|253744264|gb|EET00492.1| DNA-directed RNA polymerase RPB3 [Giardia intestinalis ATCC 50581]
Length = 326
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 143/303 (47%), Gaps = 22/303 (7%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P +KI D + E+R D S N LRR + A+VPT+AID+V+ NS+ L +EFIAH
Sbjct: 3 PSIKILSKTDLKLELEIRGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIAH 62
Query: 70 RLGLIPLTSERAMS-MRFSRDCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
RLGLIPL + +S + + CD + +C C+ + L + + VT KD+
Sbjct: 63 RLGLIPLRTAGPLSAISYWYTCDEEHSTEIECRECTFKGTLNVSNDTTKIRVVTDKDI-K 121
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
DH + + I I+KL G+ + ARK GK HAKW PAA V
Sbjct: 122 FDHGGISTLSNYMGSLLGVIEAPSIPILKLAPGESINALLYARKDRGKIHAKWCPAACVV 181
Query: 188 FMYEPEIHINEDLMESLSLEEK---QSWV-ESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
+I I D E L + +S++ ++ P KVF I+ +V V D + ++
Sbjct: 182 LRPLAKI-ILCDEFEKLPQQHNDIARSYISDTCPRKVFTIE--NRRVVVKDPNNCIFCND 238
Query: 244 VIK----------KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
A + P LV + D+F F++ES G++ A + L A + + +
Sbjct: 239 CFNIPISLDGQNTDANTIWHPALVT--QQPDAFYFSIESNGSLSAYDIFLMACDEISSRA 296
Query: 294 DAV 296
D V
Sbjct: 297 DEV 299
>gi|20094910|ref|NP_614757.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
gi|23822100|sp|Q8TVB8.1|RPOD_METKA RecName: Full=DNA-directed RNA polymerase subunit D
gi|19888146|gb|AAM02687.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
Length = 275
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 137/280 (48%), Gaps = 37/280 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A F + +T A N +RR + VPT+ I+ V I N + + DE +AHRLGLIPL +
Sbjct: 19 ATFIIEETSAEFVNTIRRALYTLVPTLRIEEVIIYENDTPMYDEMLAHRLGLIPLRVDDI 78
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
CD C G G CE C V RA+ + V ++DL DH V+PA
Sbjct: 79 DQFELPDLCD-CGGKG-CEKCQV----RAELEVEGPTKVYARDL-KFDHP-----DVEPA 126
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
D+ +I ++ Q +RL IA G+G +HAKW P + V + PE+ I+ED
Sbjct: 127 FPDT-------LITEVGEDQRIRLEVIAVPGLGLEHAKWKPVSAVGYKGLPELEIDED-- 177
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVD----AEAYTYDDEVIKKAEAMGKPGLV 257
L+EK+ E P + I+ G+V +D E Y K G V
Sbjct: 178 ---KLKEKKITYE-CPQGIIRIE--NGEVVHIDEDRLPECRMY------KEYERETDGAV 225
Query: 258 EIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ ++D+F+F VE+ G++ +L A++ ++ KL++++
Sbjct: 226 RVRLRDDAFVFNVETDGSMSLDTAILKALDAIEHKLESLK 265
>gi|410670316|ref|YP_006922687.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
gi|409169444|gb|AFV23319.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
Length = 265
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 134/295 (45%), Gaps = 43/295 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V I E+ + AKF L D A+ AN +RR +++VPT+AI V I N+SVL DE + R
Sbjct: 4 EVDILEMSERSAKFVLSDVSAAFANGIRRAALSDVPTLAITYVNIYNNTSVLFDEQLGLR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPL + F + G +C C V L A + V S D SSD
Sbjct: 64 LALIPLAANIE---EFVPVEECICGGSECPACRVSLTLSA----EGPRMVYSGDFVSSDE 116
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
+V P + P I++L+ GQ++ L AIA G G HA+W +
Sbjct: 117 TVQPAEANIP-------------IIELKEGQKVVLEAIAHMGYGNQHARWQAGVACGYKN 163
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P + N+ + + V+ P + + P + +D+++K
Sbjct: 164 MPVVTFNK-------CDSCGACVKECPQGIITMGPEGAGI---------SEDDILKCILC 207
Query: 251 MGKPGLVEIYA-----KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
G+ EI A E +F+FT+ES G+ QL++NA + +K K A R+ E
Sbjct: 208 KLCQGICEIDAITVSQDERAFVFTMESDGSYTIQQLIINAGKSIKDK--ATRMGE 260
>gi|396080763|gb|AFN82384.1| RNA polymerase I and III subunit AC40 [Encephalitozoon romaleae
SJ-2008]
Length = 305
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 147/293 (50%), Gaps = 33/293 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI E + +F+L + D S ANALRR++ +VPT+A+ V ++ N SV DEFIAHR
Sbjct: 31 EIKITEYSGERLEFDLVNVDCSFANALRRILCNDVPTMAVKDVFLKENESVFPDEFIAHR 90
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL ++ M ++ + E S+ F L S ++V YS D
Sbjct: 91 LGLIPLEADPEMFEFVEKELN--------ERNSLRFVLNVTNESKDVMNV-----YSDDI 137
Query: 131 SVVPV----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
+P + + A + S G+++ KL RGQ++ + K IG+ HAKWSP
Sbjct: 138 KWIPFGGQREALRNAKFCS-----GVLMFKLARGQKINAELVCTKNIGRVHAKWSPVCPA 192
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV--YVVDAEAYTYDDEV 244
T+ P I I D+ + + + ++ + E V D+ + G++ YVV+ T E
Sbjct: 193 TYRLMPLIEIG-DVFDEDAYKLQKCFSEG----VIDVRLSDGRMKAYVVNPRLDTMSREA 247
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
++ E K V I + D F+FT+ S + L+ A+ +L +K A+R
Sbjct: 248 LRHEEFKDK---VFIGRRSDYFLFTINSV-FLDPLYLLKKAVSILIEKSMALR 296
>gi|260803742|ref|XP_002596748.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
gi|229282008|gb|EEN52760.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
Length = 290
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 136/297 (45%), Gaps = 67/297 (22%)
Query: 2 DGASYQRFPKVKI----RELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEV 57
D S +F +VK+ R ++ +F++ DA++ANA RR+++AEVPT+AI+ V +
Sbjct: 35 DTWSLAKFEEVKVPSEHRVVEGSELEFDMVGIDAAIANAFRRILLAEVPTMAIEKVFVHN 94
Query: 58 NSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
N+S++ DE +AHRLGLIP+ H+D
Sbjct: 95 NTSIIQDEVLAHRLGLIPI------------------------------------HADPR 118
Query: 118 LDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
L Y + + PV I+I KLR GQE+ L+ KGIG+DH
Sbjct: 119 LFE-----YRQEGDIKPV-------------HDDILIAKLRPGQEMDLKLHCVKGIGRDH 160
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--QVYVVDA 235
AK+SP AT ++ PEI L E + E V V ++ G + VV++
Sbjct: 161 AKFSPVATASYRLLPEI----VLTEEVKGERADRLVRCFSPGVMEVTEENGVKKARVVNS 216
Query: 236 EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
T E+ + + V++ D FIF+VESTGA+ LV A +VL K
Sbjct: 217 RLDTCSREIFRHPDL---KDCVKLNKLRDHFIFSVESTGALAPDVLVCEATKVLMGK 270
>gi|332796346|ref|YP_004457846.1| RNA polymerase D subunit [Acidianus hospitalis W1]
gi|332694081|gb|AEE93548.1| Archaeal RNA polymerase D subunit [Acidianus hospitalis W1]
Length = 260
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 135/279 (48%), Gaps = 33/279 (11%)
Query: 20 DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE 79
++ L NA+RR + VP +A+D V I N+S L DE +AHRLGLIP +S+
Sbjct: 10 NFISLSLDGYPLEFVNAIRRACMLYVPVMAVDDVYIIENNSPLYDEILAHRLGLIPFSSD 69
Query: 80 RAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFV 138
A+ R S +C C + F + + AK D + V SKD+ S D +VVP+
Sbjct: 70 EAIDHYRPSEECANCQENCDGCFSKIYLDVEAK---DSEVMVYSKDIKSDDPAVVPI--- 123
Query: 139 DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 198
+ I IV L + Q++ L A R G G +HAK++P Y P I + +
Sbjct: 124 ----------SKDIPIVLLGKNQKVSLEARLRLGYGIEHAKFNPVTIAVLRYYPHIELKD 173
Query: 199 DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVE 258
D E P KVF + G++ + + A T +E ++ E ++
Sbjct: 174 D--------SCVKAAEVCPEKVFAV--KDGKLVIANEIACTLCEECLRYCEG------IK 217
Query: 259 IYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
I + E+ +I +ES G++K +++L A + + +KL+ ++
Sbjct: 218 ISSVENKYILEIESVGSLKPERILLEAGKSIVRKLEELK 256
>gi|254167792|ref|ZP_04874642.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289597072|ref|YP_003483768.1| RNA polymerase insert [Aciduliprofundum boonei T469]
gi|197623320|gb|EDY35885.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289534859|gb|ADD09206.1| RNA polymerase insert [Aciduliprofundum boonei T469]
Length = 273
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 142/297 (47%), Gaps = 47/297 (15%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLV--------EIEVN----SSV 61
I EL+D Y KFE++ S+ANALRR +I ++P +AI V ++E N S+
Sbjct: 5 ILELQDRYIKFEIKGITPSVANALRRTLINDIPKLAIHKVIFHHGQIRDMEGNVYDSSTP 64
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
L DE IAHRLGLIPL ++ ++M+F +CD +G C C+V + L H T V
Sbjct: 65 LFDEIIAHRLGLIPLPTD--LNMKFRDECDHPPDEG-CPLCTVTYTLNK--HGPAT--VY 117
Query: 122 SKDLYS-SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
S DL D PVD + P IVKL+ Q + L A A G K+HAKW
Sbjct: 118 SGDLIPVGDEKFKPVDPLIP-------------IVKLKEHQAILLEAEAIMGTAKEHAKW 164
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+ V++ Y EI +N+ E L EK +S P V D D
Sbjct: 165 QVTSGVSYKYHREIKVNKKDSE---LWEKVK--KSCPKNVIKED---------DKFIIFT 210
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
DD K+ + EI + FIF E+ G++KA + AI+ LK + + +R
Sbjct: 211 DDIPCKEIAEILSFENPEITEDDSWFIFEFETDGSLKAIDTLEYAIKRLKTRFNTLR 267
>gi|330834009|ref|YP_004408737.1| DNA-directed RNA polymerase subunit D [Metallosphaera cuprina Ar-4]
gi|329566148|gb|AEB94253.1| DNA-directed RNA polymerase, subunit D [Metallosphaera cuprina
Ar-4]
Length = 262
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 134/271 (49%), Gaps = 41/271 (15%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDA 92
NA+RR + VP +A+D V I N+S L DE +AHRLGLIP S A+ F R +
Sbjct: 24 FVNAVRRASMIYVPVMAVDEVYIVENNSPLYDEVLAHRLGLIPFDSREALD--FYRRPEE 81
Query: 93 C-DGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
C D CE C + ++ Q + V SKD+ + D +V+P+ +
Sbjct: 82 CIDCAENCEKCFTKAYIEVSAEESQVM-VYSKDIRTEDPNVIPIS-------------KD 127
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I IV L + Q++ L R G GK+HAK++P Y+P++ +N + +
Sbjct: 128 IPIVLLGKKQKISLEMRMRLGYGKEHAKFNPVTMAIVRYKPKVKVNSNC---------EK 178
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
E P KVF + N ++ V + A T +E +K PG+ + + D ++ +E
Sbjct: 179 AAEVCPYKVFSYENN--ELKVENELACTLCEECVKFC-----PGIT-VEPEPDKYVLELE 230
Query: 272 STGA-------IKASQLVLNAIEVLKQKLDA 295
S G+ I+A++ +LN +E LK+K++A
Sbjct: 231 SVGSLDPRRILIEATKSILNKVEELKKKVEA 261
>gi|353241596|emb|CCA73401.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Piriformospora indica DSM 11827]
Length = 382
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 154/330 (46%), Gaps = 50/330 (15%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ K++ + ++++ +F+L D S+ANA RR++I+EVPT+AI+ V + N+SV
Sbjct: 41 DLVDFKKHVKLEFQYVEEERIEFDLVGIDTSIANAFRRIIISEVPTVAIERVYVYDNTSV 100
Query: 62 LNDEFIAHRLGLIPLTSERAM----------------SMRFSRDCDACDGDGQCEFCSVE 105
+ DE ++HRLGLIPL + M +M FS D D DG
Sbjct: 101 IQDEVLSHRLGLIPLRIDPRMLEDAPQNYQDDSTDRNTMVFSLDVTCADRDG-------- 152
Query: 106 FHLRAKCHSDQTLDVTSKDLYSSDHSVVP------VDFVDPAGYDSTDQQRGIIIVKLRR 159
+R + L + S +Y+ D VP + DP + + I+I KLR
Sbjct: 153 --VRPGTTDPEKLYINSS-VYAKDLQWVPQGEQETIFASDPPRAANPN----ILIAKLRP 205
Query: 160 GQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE------------DLMESLSLE 207
Q + L A K IG+DH K+SP T + P I + + D +E E
Sbjct: 206 EQSIHLEMHAVKSIGRDHTKFSPVGTAFYRLMPHIQLLKPGDRYDEESRKVDKLEMADQE 265
Query: 208 EKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFI 267
+ + + ++ V ++ G+ Y V +A D+ + E G+V + D FI
Sbjct: 266 QAKRFQDAFSEGVIEVKKERGK-YYVRVKAPRRDNVTRRILELREFDGMVRLGRVRDWFI 324
Query: 268 FTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+T+ESTG A + A+ V K K+ ++
Sbjct: 325 YTIESTGQYPAVDIFPVALGVFKSKIRTLK 354
>gi|332157864|ref|YP_004423143.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
gi|331033327|gb|AEC51139.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
Length = 259
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 133/284 (46%), Gaps = 38/284 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+KI + +D F L + AN+LRR ++ EVPT A+D VE N S L DE IAHR
Sbjct: 3 KIKILKKTEDSITFLLEGVSVAFANSLRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L +IPL + RF D D +V L+A+ V S DL S D
Sbjct: 63 LAMIPLKTPVD---RFELDALELDD------YTVTLSLKAEGPG----IVYSGDLESDDP 109
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV+ I IVKL +GQ+L A AR G GKDHAKW P T + Y
Sbjct: 110 DVKPVN-------------PNIPIVKLAKGQKLVFNAYARLGRGKDHAKWQPGFTY-YKY 155
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
+IHI S +E + + + + ++ N ++ V + + E E
Sbjct: 156 YTKIHI------SKKIEGWEKLKKLAKKRGLPVEENDNEIIVETIKPFYIPKEF---EEY 206
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
GK EI +S++F VES G + ++V A+++L +K D
Sbjct: 207 EGKEIWEEIVP--NSYVFVVESNGELPVEEIVKIALKILMRKAD 248
>gi|300708874|ref|XP_002996608.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
gi|239605923|gb|EEQ82937.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
Length = 293
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 131/278 (47%), Gaps = 40/278 (14%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F+L D S+ANALRR++I E+PT AI+ V I N+SVL DEF+AHRLGLIPL
Sbjct: 43 EFDLVGVDCSVANALRRILINEIPTFAIENVFIFDNTSVLPDEFLAHRLGLIPL------ 96
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAG 142
D C E F L+ S + + VTS D + ++ G
Sbjct: 97 --------DVC---PDLEVGDFHFELKKTNTSSEVMTVTSND----------IKYIKKDG 135
Query: 143 YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLME 202
+ + I I KL Q L + +A K +G+ HAKWSP T + P I I ED +
Sbjct: 136 QPDIEISKDIPIAKLAPKQALIIEMVACKNVGRVHAKWSPVCTAAYRLMPIIKI-EDFYD 194
Query: 203 SLSLEEKQSWVESSPTKVFDIDPNTGQVY---VVDAEAYTYDDEVIKKAEAMGKPGLVEI 259
EE + + V + G+ Y V + T EV + E K V +
Sbjct: 195 ----EEAEKLQKCFSPGVISL-VKEGESYKAIVSEPRKDTVSREVFRHKEFENK---VFL 246
Query: 260 YAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
K D FIFTVES + LV A++++ +KLD ++
Sbjct: 247 GRKNDHFIFTVESL-VLDPIYLVKKALQIINKKLDHLK 283
>gi|225716742|gb|ACO14217.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 263
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 114/209 (54%), Gaps = 23/209 (11%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D S Q+F K + + ++ + +F++ DAS+ANA RR+++AEVPT+A++ V I N
Sbjct: 39 DTWSLQKFQKNFRIDVVQMDETCMEFDMVGIDASIANAFRRILLAEVPTMAVEKVFIYNN 98
Query: 59 SSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL 118
+S++ DE +A RLGLIP+ ++ R +A D +G E +++ L+ KC +
Sbjct: 99 TSIIQDEVLAQRLGLIPIKADP----RLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNHQA 153
Query: 119 DVTSKD---------LYSSDHSVVPV----DFVDPAGYDSTDQQRGIIIVKLRRGQELRL 165
S D +YS D + VP+ D V A I++ KLR GQEL +
Sbjct: 154 TKDSADPQELYLNHMVYSKDMTWVPIGNQADVVADANIGPV--HGDILLAKLRPGQELDI 211
Query: 166 RAIARKGIGKDHAKWSPAATVTFMYEPEI 194
KGIG+DHAK+SP AT ++ PEI
Sbjct: 212 VMHCVKGIGQDHAKFSPVATASYRLLPEI 240
>gi|254167082|ref|ZP_04873935.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|197623938|gb|EDY36500.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
Length = 273
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 142/297 (47%), Gaps = 47/297 (15%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLV--------EIEVN----SSV 61
I E++D Y KFE++ S+ANALRR +I ++P +AI V ++E N S+
Sbjct: 5 ILEVQDRYIKFEIKGITPSVANALRRTLINDIPKLAIHKVIFHHGQIRDMEGNVYDSSTP 64
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
L DE IAHRLGLIPL ++ ++M+F +CD +G C C+V + L H T V
Sbjct: 65 LFDEIIAHRLGLIPLPTD--LNMKFRDECDHPPDEG-CPLCTVTYTLNK--HGPAT--VY 117
Query: 122 SKDLYS-SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
S DL D PVD + P IVKL+ Q + L A A G K+HAKW
Sbjct: 118 SGDLIPVGDEKFKPVDPLIP-------------IVKLKEHQAILLEAEAIMGTAKEHAKW 164
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+ V++ Y EI +N+ E L EK +S P V D D
Sbjct: 165 QVTSGVSYKYHREIKVNKKDSE---LWEKVK--KSCPKNVIKED---------DKFIIFT 210
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
DD K+ + EI + FIF E+ G++KA + AI+ LK + + +R
Sbjct: 211 DDMPCKEIAEILSFENPEITEDDSWFIFEFETDGSLKAIDTLEYAIKRLKTRFNTLR 267
>gi|156061627|ref|XP_001596736.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980]
gi|154700360|gb|EDO00099.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 387
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 150/315 (47%), Gaps = 44/315 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
+ F L DAS+ANA RR++IAE+PT+AI+ ++ N+SV+ DE + RLGL+P +
Sbjct: 74 SSFSLVGIDASVANAFRRILIAEIPTLAIEYCFVKNNTSVIQDEVLCGRLGLVPFKGGKE 133
Query: 82 MSMRFSRDCDACDGD--------GQCEFCSVEFHLRAKCHSDQTL---DVTSKDLYSSDH 130
+ F + + + G + +++ L+ +C ++ + + +Y + H
Sbjct: 134 GLLDFMKWFQKPEEETPEEERHLGSFDHNTIQLSLKIECTRNKEAAPGEADPRKIYHNAH 193
Query: 131 SVVPVDFVDPAG-----YDSTDQQRG----IIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
P G + + R I+I K+R GQ + + A KGIG+DHAK+S
Sbjct: 194 VYAKDIEFKPFGRQLEYFSGENAIRSPNPDILIAKMRPGQVIDIDMHAIKGIGRDHAKFS 253
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG------------- 228
P AT ++ P I+I + ++ ++ + + + P V I+ T
Sbjct: 254 PVATASYRLLPVINITQPILG----KDAEKFKKCFPPGVIGIEKVTAKEAKIKGSGYEGH 309
Query: 229 ----QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
+ VVDA T E ++ E GK V++ D FIF++ES G + +L L
Sbjct: 310 EGEKKAVVVDAMRDTVSRECLRHEEFQGK---VKLGRVRDHFIFSIESLGQWDSDELFLE 366
Query: 285 AIEVLKQKLDAVRLS 299
+I+ L+ K +A + S
Sbjct: 367 SIKTLRTKCEAFKTS 381
>gi|227831065|ref|YP_002832845.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|229579946|ref|YP_002838345.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|229581393|ref|YP_002839792.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
gi|259494208|sp|C3MJP7.1|RPOD_SULIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494210|sp|C3NMQ0.1|RPOD_SULIN RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494211|sp|C3N8R8.1|RPOD_SULIY RecName: Full=DNA-directed RNA polymerase subunit D
gi|227457513|gb|ACP36200.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|228010661|gb|ACP46423.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|228012109|gb|ACP47870.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
Length = 265
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 138/269 (51%), Gaps = 40/269 (14%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCD 91
NA+RR + VP ++ID V N+S L DE +AHRL LIP TSE A+ + R+ +C
Sbjct: 24 FVNAIRRATMLYVPVMSIDDVYFIENNSPLYDEILAHRLALIPFTSEEALDTYRWPEECI 83
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
C + CE C + ++ A+ ++ + + SKD+ S D S+VP+ S D
Sbjct: 84 ECTEN--CEKCYTKIYIEAEALNEPKM-LYSKDIKSEDPSIVPI---------SGD---- 127
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I IV L Q++ L A R G GK+HAK+ P + Y P++ I L EK +
Sbjct: 128 IPIVLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEI-------LGNCEKAA 180
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
V P VF++ G++ V + A T +E ++ GL+ I + ED +I +E
Sbjct: 181 TV--CPEGVFEL--KDGKLSVKNELACTLCEECLRYCN-----GLIRISSIEDKYILELE 231
Query: 272 STGAIKASQLVLNA-------IEVLKQKL 293
S G++K +++L A IE L++KL
Sbjct: 232 SVGSLKPERILLEAGKSIIRKIEELEKKL 260
>gi|170291194|ref|YP_001738010.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175274|gb|ACB08327.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 251
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 140/284 (49%), Gaps = 42/284 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV++ EL D L S AN++RR +IAEVPT AID V N++ DE+IAHR
Sbjct: 2 KVRVIELSDQRTLLVLEGVSPSFANSIRRAIIAEVPTFAIDEVIFFENTTPFFDEYIAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L +IPL R S D D + +E +AK D V S +L SS
Sbjct: 62 LAMIPL--------RTSLDVLRVDPN---RTVVLELSKKAK---DPIEVVYSGELKSS-- 105
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
DP Y + D+ I I+K+R+GQ+LR +AIAR G GKDH+KWSPAA V + Y
Sbjct: 106 --------DPLIYPANDK---IPIIKMRKGQKLRFQAIARIGRGKDHSKWSPAAAVGYSY 154
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV-YVVDAEAYTYDDEVIKKAE 249
P I+ +D +E L + + +ES D +V Y V E E +++
Sbjct: 155 MP-IYELKDPVEC-DLSQCSNCIES--------DGGISRVDYPVLCEGCL---EALERCR 201
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
++ + E I + ESTG+++ ++ A+ +K KL
Sbjct: 202 VRNPDKIIRRW-DESRIIISYESTGSLRPEEIFSEALNQVKGKL 244
>gi|432329429|ref|YP_007247573.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
gi|432136138|gb|AGB05407.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
Length = 273
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 145/301 (48%), Gaps = 55/301 (18%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLV------------EIEVNSSV 61
I +++D Y +FE+R +MANALRR +I ++P +AI V ++ +S+
Sbjct: 5 ILDVQDRYIRFEIRGITPAMANALRRTLINDIPKLAIHKVIFHHGQIRDMEGKVYDSSTP 64
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
L DE IAHRLGLIPL ++ ++M+F +CD +G C C+V + L H T V
Sbjct: 65 LFDEIIAHRLGLIPLPTD--LNMKFRDECDHPPDEG-CPLCTVTYTLNK--HGPAT--VY 117
Query: 122 SKDLYS-SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
S DL D PVD + P IVKL+ Q + L A A G K+HAKW
Sbjct: 118 SGDLIPVGDDKFRPVDPLIP-------------IVKLKEHQAILLEAEAIMGTAKEHAKW 164
Query: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
+ VT+ Y EI + S ++ + W KV D P V D E +
Sbjct: 165 QVTSGVTYKYHREIRV--------SKKDSELW-----QKVKDSCPK--NVIKEDEEYIVF 209
Query: 241 DDEVIKKAEA----MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
D++ KA A +P ++E + FIF E+ G++ A + AI+ LK++ +
Sbjct: 210 TDDIPCKAMAELLSFEEPEIIE---DDSHFIFEFETDGSLTAIDTLEYAIKRLKKRFALL 266
Query: 297 R 297
R
Sbjct: 267 R 267
>gi|18978019|ref|NP_579376.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus DSM
3638]
gi|397652704|ref|YP_006493285.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
gi|23822102|sp|Q8U0E4.1|RPOD_PYRFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|18893802|gb|AAL81771.1| DNA-directed RNA polymerase subunit d [Pyrococcus furiosus DSM
3638]
gi|393190295|gb|AFN04993.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
Length = 261
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 138/287 (48%), Gaps = 44/287 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+I E K+D KF L+ S ANALRR ++ EVPT A+D VE N S L DE IAHR
Sbjct: 5 EVQILEKKEDSIKFVLKGVHVSFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 64
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L +IPLT+ RF + DA + D S+E ++ V S DL S D
Sbjct: 65 LAMIPLTTPVD---RF--ELDALELDDYTVTLSLE--------AEGPGIVYSGDLKSDDP 111
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV+ I IVKL GQ L A A+ G GKDHAKW P V + Y
Sbjct: 112 DVKPVN-------------PNIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQP-GFVYYKY 157
Query: 191 EPEIHINEDLMESLSLEE--KQSWVESSPTKVFDIDPNTGQVYVV-DAEAYTYDDEVIKK 247
+HI++ + E L++ K+ + T+ + Y+ D E Y
Sbjct: 158 YTIVHISKSIPEWKELKKLAKKRGLPVEETEEEVLVTTIKPFYIPKDFEEYE-------- 209
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
GK EI +++IFTVE+ G + ++V A+++L +K D
Sbjct: 210 ----GKEIWEEIVP--NTYIFTVETNGELPVEEIVSIALKILMRKAD 250
>gi|397779749|ref|YP_006544222.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
gi|396938251|emb|CCJ35506.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
Length = 276
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 32/288 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ L + AKF + S AN LRR M++EVPT+AI+ + I N+SVL DE +AHR
Sbjct: 2 EIAFSRLDERVAKFTISSVSTSFANMLRRAMMSEVPTLAIEDIRIYDNTSVLFDEMLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL ++ + +R C+G G C C+ + L + K +YSSD
Sbjct: 62 LGLIPLRTD--LDRYVTRAECTCEGAG-CPVCTATYTLSVE---------GPKTVYSSD- 108
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
++P D D+ + I I+ L + Q++ L A A G GK+HAKW +
Sbjct: 109 -LIPQD------PDAAPAEEEIPIIDLDKDQKVVLEAYAVIGTGKEHAKWQATTACGYKN 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDA-EAYTYDDEVIKK-- 247
P I ++E + V+ P V ++ G+V V+ + + + ++
Sbjct: 162 YPVITVDE------KCDGCGMCVDECPRDV--LEAGQGKVRVIGGRQEFCSLCRLCERAC 213
Query: 248 -AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
A +G + I A E +IF VES G++ +++ A+E +++ D
Sbjct: 214 LAGGIGTEAAIHIGADETKYIFVVESDGSMPVREIIERALEYIQKTSD 261
>gi|227828307|ref|YP_002830087.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|229585537|ref|YP_002844039.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238620499|ref|YP_002915325.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|385773987|ref|YP_005646554.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
gi|385776629|ref|YP_005649197.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|259494206|sp|C3N054.1|RPOD_SULIA RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494207|sp|C4KJ93.1|RPOD_SULIK RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494209|sp|C3MZ05.1|RPOD_SULIM RecName: Full=DNA-directed RNA polymerase subunit D
gi|227460103|gb|ACP38789.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|228020587|gb|ACP55994.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238381569|gb|ACR42657.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|323475377|gb|ADX85983.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|323478102|gb|ADX83340.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
Length = 265
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 138/269 (51%), Gaps = 40/269 (14%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCD 91
NA+RR + VP ++ID V N+S L DE +AHRL LIP TSE A+ + R+ +C
Sbjct: 24 FVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHRLALIPFTSEEALDTYRWPEECI 83
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
C + CE C + ++ A+ ++ + + SKD+ S D S+VP+ S D
Sbjct: 84 ECTEN--CEKCYTKIYIEAEALNEPKM-LYSKDIKSEDPSIVPI---------SGD---- 127
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I IV L Q++ L A R G GK+HAK+ P + Y P++ I L EK +
Sbjct: 128 IPIVLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEI-------LGNCEKAA 180
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
V P VF++ G++ V + A T +E ++ GL+ I + ED +I +E
Sbjct: 181 TV--CPEGVFEL--KDGKLSVKNELACTLCEECLRYCN-----GLIRISSIEDKYILELE 231
Query: 272 STGAIKASQLVLNA-------IEVLKQKL 293
S G++K +++L A IE L++KL
Sbjct: 232 SVGSLKPERILLEAGKSIIRKIEELEKKL 260
>gi|159115523|ref|XP_001707984.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
gi|21842208|gb|AAM77734.1|AF510642_1 RNA polymerase II subunit Rpb3 [Giardia intestinalis]
gi|157436093|gb|EDO80310.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
Length = 326
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 150/310 (48%), Gaps = 22/310 (7%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P +KI D + E+ D S N LRR + A+VPT+AID+V+ NS+ L +EFIAH
Sbjct: 3 PSIKILSKTDLKLELEISGVDISYVNGLRRAIYADVPTLAIDIVKFLDNSTTLTEEFIAH 62
Query: 70 RLGLIPLTSERAMS-MRFSRDCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
RLGLIPL + ++S + + CD + +C C+ + L S + VT KD+
Sbjct: 63 RLGLIPLRTAGSLSAISYWYTCDEEHSTEIECRECTFKGTLNISNDSTKIRVVTDKDIKF 122
Query: 128 SDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVT 187
+ + + + + + I I+KL G+ + ARK GK HAKW PAA V
Sbjct: 123 DHGGISTLSNYLESSFGAAETP-SIPILKLAPGESINALLYARKDRGKIHAKWCPAACVV 181
Query: 188 FMYEPEIHINEDLMESLSLEEK---QSWV-ESSPTKVFDIDPNTGQVYVVDAEAYTYDDE 243
I I D E L + ++++ E+ P VF I+ +V V D+ + + ++
Sbjct: 182 LRPLARI-ILCDEFERLPQQHNDVARTYISETCPRNVFTIE--NRRVVVKDSNSCIFCND 238
Query: 244 VIKKAEAMGK----------PGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
++G+ P LV + ++F F++ES G+I A + L A + + +
Sbjct: 239 CFNIPISLGEQGDNANTIWHPALVT--QQPNAFYFSIESNGSISAYDIFLMACDEISARA 296
Query: 294 DAVRLSEDTV 303
D + + +V
Sbjct: 297 DEILAAATSV 306
>gi|284998561|ref|YP_003420329.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
gi|284446457|gb|ADB87959.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
Length = 265
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 138/269 (51%), Gaps = 40/269 (14%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCD 91
NA+RR + VP ++ID V N+S L DE +AHRL LIP TSE A+ + R+ +C
Sbjct: 24 FVNAIRRATMLYVPVMSIDDVYFIENNSPLYDEILAHRLALIPFTSEEALDTYRWPEECI 83
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
C + CE C + ++ A+ ++ + + SKD+ S D S+VP+ S D
Sbjct: 84 ECTEN--CEKCYTKIYIEAEALNEPKM-LYSKDIKSEDPSIVPI---------SGD---- 127
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I IV L Q++ L A R G GK+HAK+ P + Y P++ I L EK +
Sbjct: 128 IPIVLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEI-------LGNCEKAA 180
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
V P VF++ G++ V + A T +E ++ GL+ I + ED +I +E
Sbjct: 181 TV--CPEGVFEL--KDGKLSVKNELACTLCEECLRYCN-----GLIRISSIEDKYILDLE 231
Query: 272 STGAIKASQLVLNA-------IEVLKQKL 293
S G++K +++L A IE L++KL
Sbjct: 232 SVGSLKPERILLEAGKSIIRKIEELEKKL 260
>gi|116754910|ref|YP_844028.1| RNA polymerase, insert [Methanosaeta thermophila PT]
gi|116666361|gb|ABK15388.1| DNA-directed RNA polymerase, subunit D [Methanosaeta thermophila
PT]
Length = 264
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 139/287 (48%), Gaps = 31/287 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
V++ EL+DD +F L + ANA+RR IAEVP +AID + I N+SVL DE IA R
Sbjct: 2 NVELIELRDDRVRFLLTGVTPAFANAIRRSCIAEVPKLAIDEISIYENTSVLFDEQIALR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+P+ ++ +S+ + D C G G C C ++F L A + V S+D+ SD
Sbjct: 62 LGLVPIRADD-LSVYSTPDECQCGGIG-CPGCRIDFMLTA----EGPATVHSRDIKFSDP 115
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
SV A +D+ I +V L G++L + A GK+HAKW +
Sbjct: 116 SV-------RAAFDN------IPLVVLGEGEKLVIEGFATLRTGKEHAKWQAGTLCGYKN 162
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P I I+ V+ P V +D N + V D + +++ +
Sbjct: 163 LPSIEIS-------GCNNCGRCVKVCPRGVLVLDEND-SIKVRDITECSLCRLCVEECDQ 214
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ + ED+FI ++ES G+I A LV A E LK+K A++
Sbjct: 215 RA----ISVVPLEDAFIMSIESDGSINAKDLVRMAAEELKKKALALQ 257
>gi|15922388|ref|NP_378057.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
gi|20978711|sp|Q96YW0.1|RPOD_SULTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|15623177|dbj|BAB67166.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
Length = 264
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 32/281 (11%)
Query: 18 KDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 77
+++ K + + + N++RR I VP +A+D V N+S L DE +AHRL +IP +
Sbjct: 9 ENNSLKLIVGNYPLELVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLAMIPFS 68
Query: 78 SERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVD 136
S+ A+ R +C C + C+ C +L + +T+ V S+DL + D ++VP+
Sbjct: 69 SDEALDHYRPPEECAECKEN--CDGCYARVYLDVGANEGETVMVYSRDLKTDDPAIVPI- 125
Query: 137 FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
I IV L Q++ L A R G GK+H K+SP + Y P + +
Sbjct: 126 ------------SGNIPIVLLGPKQKVTLEARLRLGYGKEHIKFSPVSIAVVRYYPHVEV 173
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL 256
+ + E P VF ++ G+++V + A T +E IK E
Sbjct: 174 KGNC---------EKAFEVCPEGVFGME--NGKLFVKNEVACTLCEECIKYCENN----- 217
Query: 257 VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+ I A E+ +I +ES G++K ++++ A + L +KL+ ++
Sbjct: 218 IFISAVENKYILEIESVGSLKPERILIEAGKSLLRKLNQLK 258
>gi|237823480|pdb|2WAQ|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823493|pdb|2WB1|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823508|pdb|2WB1|S Chain S, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462791|pdb|2Y0S|D Chain D, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462806|pdb|2Y0S|S Chain S, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260745|pdb|4AYB|D Chain D, Rnap At 3.2ang
gi|400260762|pdb|4B1O|D Chain D, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260781|pdb|4B1P|S Chain S, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814435|gb|ACL36491.1| RNA polymerase subunit 3 [Sulfolobus shibatae B12]
Length = 265
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 138/269 (51%), Gaps = 40/269 (14%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCD 91
NA+RR + VP ++ID V N+S L DE +AHRL LIP TSE A+ + R+ +C
Sbjct: 24 FVNAIRRAAMLYVPVMSIDDVYFIENNSPLYDEILAHRLALIPFTSEEALDTYRWPEECI 83
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
C + CE C + ++ A+ ++ + + SKD+ S D S+VP+ S D
Sbjct: 84 DCTEN--CEKCYTKIYIEAEALNEPKM-LYSKDIKSEDPSIVPI---------SGD---- 127
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I IV L Q++ L A R G GK+HAK+ P + Y P++ I L EK +
Sbjct: 128 IPIVLLGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEI-------LGNCEKGA 180
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
V P VF++ G++ V + A T +E ++ GL+ I + ED +I +E
Sbjct: 181 TV--CPEGVFEL--KDGKLSVKNELACTLCEECLRYCN-----GLIRISSVEDKYILELE 231
Query: 272 STGAIKASQLVLNA-------IEVLKQKL 293
S G++K +++L A IE L++KL
Sbjct: 232 SVGSLKPERILLEAGKSIIRKIEELEKKL 260
>gi|386001506|ref|YP_005919805.1| DNA-directed RNA polymerase subunit D [Methanosaeta harundinacea
6Ac]
gi|357209562|gb|AET64182.1| DNA-directed RNA polymerase subunit D [Methanosaeta harundinacea
6Ac]
Length = 266
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 132/282 (46%), Gaps = 29/282 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V++ EL + A+F LR + ANA+RR +AEVP++AID + I N+SVL DE ++ R
Sbjct: 2 QVELIELVEGRARFLLRGVTPAFANAIRRACLAEVPSLAIDEISIYDNTSVLFDEQLSLR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+P+ ++ R +C+ C G G C C V L A + V S DL SD
Sbjct: 62 LGLVPIKADDLSLFRVPEECE-CGGAG-CPACQVGMTLSA----EGPCTVHSGDLRFSDP 115
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V V ++ I I L G++L L I G HAKW +
Sbjct: 116 GVKVV-------FEK------IPIAILGEGEKLMLEGIVTLNRGTVHAKWQAGTQCGYKN 162
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
PEI I++ E VE P KV I G+V V D + + I + +
Sbjct: 163 LPEITISD------RCEGCGKCVEVCPRKVLVIGEGEGKVRVHDPISCSLCKLCIGECDV 216
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
G + + A ED F+ +++ G++ A LV A ++++
Sbjct: 217 ----GAINVSAVEDVFVMKIDTDGSMPAKDLVTGAAGEIRRR 254
>gi|124027415|ref|YP_001012735.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
gi|123978109|gb|ABM80390.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
Length = 281
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 130/264 (49%), Gaps = 27/264 (10%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSR--DC 90
+ NA+RR ++VP +A+D+VE+ N++VL DE IAHRLGLIPLTS+ A+ ++ R +C
Sbjct: 25 LVNAIRRAAYSDVPVMAVDVVEVFENNTVLYDEIIAHRLGLIPLTSKEALQ-KYKRPEEC 83
Query: 91 DACD-GDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQ 149
+ + GD C V L + + V S DL +SD V PV YD+
Sbjct: 84 EKAELGDPS---CYVVLRLEVETGPREERIVYSGDLETSDPDVRPV-------YDNMP-- 131
Query: 150 RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEK 209
IV + Q LRL+A AR G G++HAKW P + Y P + N D M +
Sbjct: 132 ----IVVMAPDQRLRLQAYARLGYGREHAKWMPVSVAAHRYLPILEFNLDEMSDECIRCI 187
Query: 210 QSWVESSPTKVFDIDPNTGQVYVV-DAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIF 268
+S K+ ++ +G + VV D V ++ G V++ + FI
Sbjct: 188 ESGYPELAAKIREM--RSGSIAVVEDVNTSGLYWCVQRRCGGKG----VKLVYDDKRFIL 241
Query: 269 TVESTGAIKASQLVLNAIEVLKQK 292
+ESTGA+ +V A + +K
Sbjct: 242 KIESTGALPPEDIVREAARAIVRK 265
>gi|159041731|ref|YP_001540983.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
gi|157920566|gb|ABW01993.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
Length = 305
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 134/290 (46%), Gaps = 34/290 (11%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
VK+ + DDY KF + S+ N+LRR++I +VP +AID V + N++V+ DE +AHRL
Sbjct: 7 VKVLQYSDDYLKFVVEGVKPSLINSLRRILITDVPVLAIDRVIVLDNTTVMYDEVLAHRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
+IPL + + +C+ D C V + L K + DQ + V +KDL D
Sbjct: 67 SMIPLKTNLEKLPKI-EECE--DELVDPSLCQVRYQLSIKAN-DQVVSVYAKDLIPDDPD 122
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
PV Y T +IVK+ +GQ L + A A+ G +DHAKW A ++ Y
Sbjct: 123 FAPV-------YPDT------LIVKMSKGQVLSIEAYAKLGRARDHAKWQ-ACLASYYYY 168
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
P++ + L + + I + + D T+D+ K E
Sbjct: 169 PKVQL---------LNPRDERCAACLESCKGITRKNDEYVITDPLQCTFDN--WKTCEEA 217
Query: 252 GKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK----LDAVR 297
LV + ED ++F VE+ G + L+ A V K + LD +R
Sbjct: 218 CSGSLV-VDWDEDKYVFWVENYGNMSMVNLLKEAFRVWKWRFTTFLDVIR 266
>gi|126179746|ref|YP_001047711.1| DNA-directed RNA polymerase subunit D [Methanoculleus marisnigri
JR1]
gi|125862540|gb|ABN57729.1| DNA-directed RNA polymerase, subunit D [Methanoculleus marisnigri
JR1]
Length = 276
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 131/288 (45%), Gaps = 32/288 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ L + AKF L S AN LRR MI+EVPT+AI+ V I N+SVL DE +AHR
Sbjct: 2 EIAFSRLDERVAKFTLSGVSMSFANMLRRAMISEVPTLAIEDVRIYDNTSVLFDEMLAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL R R+ + D C C+ + L + K +YSSD
Sbjct: 62 LGLIPL---RTDLKRYKPRSECTCEDAGCPVCTATYTLSVE---------GPKTVYSSD- 108
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
++P D D+ I I++L R Q+L L A A G GK+HAKW +
Sbjct: 109 -LIPQD------PDAAPADEKIPIIELARDQKLVLEAQAIVGTGKEHAKWQATTACGYKN 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE----AYTYDDEVIK 246
P I I+E + ++ P V + G++ VV+ + E
Sbjct: 162 YPVIAIDE------RCDGCGMCIDECPRSVLET--AQGKIRVVEERQELCSLCRLCERAC 213
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
A +G + I + FIF VE G+I +++ A++ +++ D
Sbjct: 214 LAGGIGTEPAIHIGTDAERFIFVVEGDGSIPVREIIERALQYIQKSSD 261
>gi|14520746|ref|NP_126221.1| DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
gi|13124531|sp|Q9V198.1|RPOD_PYRAB RecName: Full=DNA-directed RNA polymerase subunit D
gi|5457962|emb|CAB49452.1| rpoD DNA-directed RNA polymerase, subunit D [Pyrococcus abyssi GE5]
gi|380741285|tpe|CCE69919.1| TPA: DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
Length = 259
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 135/284 (47%), Gaps = 38/284 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++KI + DD F L D + ANALRR ++ EVPT A+D VE N S L DE IAHR
Sbjct: 3 EIKILKKTDDSITFILEGVDVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L +IPL + RF + DA + D S+E ++ V S DL S D
Sbjct: 63 LAMIPL---KTPVDRF--ELDALELDDYTVTLSLE--------AEGPGIVYSGDLKSDDP 109
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PA D I IVKL +GQ L A A+ G GKDHAKW P T + Y
Sbjct: 110 D------VKPANPD-------IPIVKLAKGQRLVFNAFAKLGRGKDHAKWQPGFTY-YKY 155
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
IHI++++ E +K + P K N +V V + + E E
Sbjct: 156 FTRIHISKEI-EGWEKLKKLAKKRGLPVK-----ENENEVIVETIKPFYIPKEF---EEY 206
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
GK EI ++++F VE+ G + ++V A+++L +K D
Sbjct: 207 EGKGIWEEIVP--NTYVFVVETNGELPVEEIVKIALKILMRKAD 248
>gi|154319504|ref|XP_001559069.1| hypothetical protein BC1G_02233 [Botryotinia fuckeliana B05.10]
gi|347842400|emb|CCD56972.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Botryotinia fuckeliana]
Length = 389
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 149/315 (47%), Gaps = 44/315 (13%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
+ F L DAS+ANA RR++IAE+PT+AI+ ++ N+SV+ DE + RLGL+P +
Sbjct: 76 SSFSLIGIDASVANAFRRILIAEIPTLAIEYCFVKNNTSVIQDEVLCARLGLVPFKGGKE 135
Query: 82 MSMRFSRDCDACDGD--------GQCEFCSVEFHLRAKCHSDQTL---DVTSKDLYSSDH 130
+ F + + + G + +++ L+ +C ++ + + +Y + H
Sbjct: 136 GLLDFMKWFQKPEEETPEEERHLGSFDHNTIQLTLKIECTRNKEAAPGETDPRKVYHNAH 195
Query: 131 SVVPVDFVDPAG----YDSTDQ-----QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
P G Y S + I+I K+R GQ + + A KGIG+DHAK+S
Sbjct: 196 VYAKDIEFKPFGRQLEYFSGENTIKSPNPDILIAKMRPGQVIDIDMHAIKGIGRDHAKFS 255
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG------------- 228
P AT ++ P I I + ++ + + K+ + P V I+ T
Sbjct: 256 PVATASYRLLPVIDITQPILGKDAKKFKRCF----PDGVIGIEKVTAKEAKIKGSGYEGH 311
Query: 229 ----QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLN 284
+ VVDA T E ++ E GK V++ D FIF++ES G + +L L
Sbjct: 312 EGEDKAVVVDAMRDTVSRECLRHEEFQGK---VKLGRVRDHFIFSIESLGQWDSDELFLE 368
Query: 285 AIEVLKQKLDAVRLS 299
+I+ L+ K +A + S
Sbjct: 369 SIKTLRTKCEAFKTS 383
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 141/295 (47%), Gaps = 28/295 (9%)
Query: 20 DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLT-- 77
D +F++ D S ANALRR++IAEVP+I+I+ V + N+SV+ DE + HRLGLIPL
Sbjct: 46 DTLEFDMVHIDCSFANALRRILIAEVPSISIERVYLFQNTSVMPDEVLCHRLGLIPLAIV 105
Query: 78 -SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAK------CH--------SDQTL-DVT 121
R + D E +F + K C SD L V
Sbjct: 106 PRHLIFPSRILPETDELTEFNPMEHVIFDFKVSFKKSDLKGCSESSGKEFISDLNLPSVR 165
Query: 122 SKDLYSSDHSVVPVDFVDPA-GYDS-TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
S +YSS+ VP+ + G D T I+I KL G E+ R +A KG+G+DHAK
Sbjct: 166 SSAVYSSELKWVPLPGQEELFGEDQPTVVSPHILINKLAVGDEIEARCVAVKGVGRDHAK 225
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
+SP A + + P I L+ + +E + S V IDP T Q Y+++A
Sbjct: 226 FSPVAAAYYKFLPVI----KLLRPIEGDEARLLQRSFAHGVIGIDPKTEQAYILNARLDN 281
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK--ASQLVLNAIEVLKQK 292
E ++ + + V + IFTVES + ++LV +AIEV+ +K
Sbjct: 282 GSREHMRHPQF--RDDAVFVGVDSSHCIFTVESIAPSQRPPARLVRSAIEVMIEK 334
>gi|401825113|ref|XP_003886652.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
gi|395459797|gb|AFM97671.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 27/290 (9%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ I E + +F+L + D S ANALRR++ ++PT+A+ V ++ N SV DEFIAHR
Sbjct: 31 EINITEYTKERLEFDLINVDCSFANALRRILCNDIPTMAVRDVLLKENESVFPDEFIAHR 90
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL ++ M ++ + E S+ F L K S L+V YS D
Sbjct: 91 LGLIPLEADPEMFEFAEKELN--------ERNSLRFVLDVKNESKDVLNV-----YSDDI 137
Query: 131 SVVPVDFVDPAG-YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+P F G +++ KL RGQ + + K IGK HAKWSP T+
Sbjct: 138 KWIP--FGSQRGTLKDVKFSSKVLMFKLARGQRISAELVCTKNIGKVHAKWSPVCPATYR 195
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV--YVVDAEAYTYDDEVIKK 247
P I I D+ + + + ++ + E V D+ P+ G++ YV + T E ++
Sbjct: 196 LMPLIEIG-DVFDEDAYKLQKCFSEG----VIDVRPSDGRMKAYVNNPRLDTMSREALRH 250
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E K V I + D F+FT+ S + L+ A+ +L +K A++
Sbjct: 251 DEFKDK---VFIGRRSDYFLFTINSV-FLDPLYLLKKAVLILIEKSRALK 296
>gi|118088012|ref|XP_001234462.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Gallus gallus]
Length = 300
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 50/284 (17%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
+RE +D +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHRLGL
Sbjct: 48 VRE-EDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHRLGL 106
Query: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV---TSKDLYSSDH 130
IP+ ++ + F R + +S V DL+ D
Sbjct: 107 IPIRADPRL-----------------------FEYRNQVYSKHMTWVPLGNQTDLF-PDA 142
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
PV I+I LR GQE+ + KGIGKDHAK+SP AT ++
Sbjct: 143 DFRPV-------------HDDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRL 189
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ--VYVVDAEAYTYDDEVIKKA 248
P+I L++ + E ++ + V +I G+ V +A T+ EV +
Sbjct: 190 LPDI----TLLQPVEDEAAETLQKCFSPGVIEIQNIKGKKVARVANARLDTFSREVFRHE 245
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
G LV + + +IF+VESTG + LV AI++L K
Sbjct: 246 ---GLKNLVRLARVRNHYIFSVESTGILPPDVLVTEAIKILMGK 286
>gi|391867820|gb|EIT77060.1| RNA polymerase I and III, subunit RPA40/RPC40 [Aspergillus oryzae
3.042]
Length = 290
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 136/291 (46%), Gaps = 54/291 (18%)
Query: 42 IAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSERAMSMRFSRDC--DACDGDG 97
+AEVP++AI+ V + N+SV+ DE +A RLGLIPL + + MR+ + D +G
Sbjct: 1 MAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGINWMRWFKKATEDDPEGSD 60
Query: 98 QCEFCSVEFHLRAKCHSDQTLDVTSKD---------LYSSDHSVVPV----------DFV 138
++ ++ L +C + D T D +Y+ D + PV D +
Sbjct: 61 PSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDITFHPVGRQEQFFTGEDAI 120
Query: 139 DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 198
P D I+I KLR GQ++ L KGIG DHAK+SP AT ++ P+I I
Sbjct: 121 QPVNPD-------ILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLPDIQI-- 171
Query: 199 DLMESLSLEEKQSWVESSPTKVFDIDPNT-------GQVY----------VVDAEAYTYD 241
+ + E+ + + + P V ++P T G Y V DA T
Sbjct: 172 --LRPILGEDAKKFAKCFPKGVIGLEPVTREEAAKQGSGYEGHEGETKAVVRDAFKDTVS 229
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
E ++ E GK V++ D FIF +ESTG + L L +++VLK K
Sbjct: 230 RECLRHEEFQGK---VKLGRVRDHFIFNIESTGQFDSDVLFLESVKVLKLK 277
>gi|312382270|gb|EFR27786.1| hypothetical protein AND_05113 [Anopheles darlingi]
Length = 259
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 32/224 (14%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F++ + ++AN RR+M++EVP++AI+ V I N+S++ DE +AHRLGLIPL ++ M
Sbjct: 54 EFDMIGVNPAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQDEVLAHRLGLIPLRADPRM 113
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLDVTSKDLYSSDHSVVPVDFVDP 140
+ A + D S+EF L+ KC + + +VT+ D +HS+
Sbjct: 114 F-----EYKANETDPPTAQDSLEFELKVKCTRKNKDSTEVTNNDNMYRNHSI-------- 160
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
Y I K+R G E ++ A KGIGKDHAK+SP ATV++ P+I + + +
Sbjct: 161 --YSGQ-------INKMRPGHEFDIKLFAVKGIGKDHAKFSPVATVSYRMLPDIQLTQPV 211
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
+ + + ++ + SP V +ID + Q YV DA YD V
Sbjct: 212 IGNDARLLQKCF---SPG-VIEID-KSDQAYVKDAR---YDSAV 247
>gi|13124813|sp|O59303.2|RPOD_PYRHO RecName: Full=DNA-directed RNA polymerase subunit D
Length = 259
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 134/286 (46%), Gaps = 42/286 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+KI + +D F L + ANALRR ++ EVPT A+D VE N S L DE IAHR
Sbjct: 3 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L +IPL + + RF + DA + D S+E ++ V S DL S D
Sbjct: 63 LAMIPL---KTPTDRF--ELDALELDDYTVTLSLE--------AEGPGIVYSGDLKSDDP 109
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV I IVKL +GQ L A A+ G GKDHAKW P T + Y
Sbjct: 110 DVKPV-------------TPDIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQPGFTY-YKY 155
Query: 191 EPEIHINEDL--MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
+HI++ + E L+ K+ PTK N +V V + + E
Sbjct: 156 FTRVHISKKINGWEKLAKLAKKR---GLPTK-----ENEEEVIVETIKPFYIPKEF---E 204
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
E GK EI D+++F VE+ G + ++V A+ +L +K D
Sbjct: 205 EYEGKEIWEEIVP--DTYVFVVETNGELPVEEIVKIALRILMRKAD 248
>gi|14591408|ref|NP_143488.1| DNA-directed RNA polymerase subunit D [Pyrococcus horikoshii OT3]
gi|3258066|dbj|BAA30749.1| 261aa long hypothetical DNA-directed RNA polymerase subunit D
[Pyrococcus horikoshii OT3]
Length = 261
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 134/286 (46%), Gaps = 42/286 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+KI + +D F L + ANALRR ++ EVPT A+D VE N S L DE IAHR
Sbjct: 5 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 64
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L +IPL + + RF + DA + D S+E ++ V S DL S D
Sbjct: 65 LAMIPL---KTPTDRF--ELDALELDDYTVTLSLE--------AEGPGIVYSGDLKSDDP 111
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV I IVKL +GQ L A A+ G GKDHAKW P T + Y
Sbjct: 112 DVKPV-------------TPDIPIVKLAKGQRLVFNAYAKLGRGKDHAKWQPGFTY-YKY 157
Query: 191 EPEIHINEDL--MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
+HI++ + E L+ K+ PTK N +V V + + E
Sbjct: 158 FTRVHISKKINGWEKLAKLAKKR---GLPTK-----ENEEEVIVETIKPFYIPKEF---E 206
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
E GK EI D+++F VE+ G + ++V A+ +L +K D
Sbjct: 207 EYEGKEIWEEIVP--DTYVFVVETNGELPVEEIVKIALRILMRKAD 250
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 145/298 (48%), Gaps = 36/298 (12%)
Query: 20 DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE 79
D +F++ + D S ANA+RR++++EVP++AI+ V + N+S++ DE + HRLGLIPL +
Sbjct: 48 DTMEFDMINLDCSFANAVRRILVSEVPSLAIERVYVSQNTSIMPDEVMCHRLGLIPLAVD 107
Query: 80 RAMSMRFSRDCDACDGDGQC--------EFC------SVEFHLRAKCHSDQTLDVTSK-D 124
+ +R A D + C S + H + + D TL V
Sbjct: 108 PKYFLFPTRKPPASDDLSGFDPKEHLVYDLCVGFTHSSKDSHNKPEKDKDDTLPVAQYLP 167
Query: 125 LYSSDHSVVPV----DFVD----PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176
+YSSD +P+ D + P ST I+I KL G E+ R +A KGIG+D
Sbjct: 168 VYSSDLKWIPLAGQEDHFNINNPPIPVSST-----ILINKLALGDEIEARCVAVKGIGRD 222
Query: 177 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236
HAK+SP A + + P I L+ ++ E+ +S + V I+ TGQ +V +A
Sbjct: 223 HAKFSPVAAAYYKFHPII----KLLRTIEGEQAIKLQKSFASGVIGINSKTGQAFVDNAR 278
Query: 237 AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVES--TGAIKASQLVLNAIEVLKQK 292
E ++ E + ++ + IFTVE+ G+ S LV A+ V+ K
Sbjct: 279 LDNGSREHMRHPEF--RDDVIFVGMDSSHCIFTVETIAPGSRPPSSLVRCALGVMISK 334
>gi|16082064|ref|NP_394490.1| DNA-directed RNA polymerase subunit D [Thermoplasma acidophilum DSM
1728]
gi|13124516|sp|Q9HJD9.1|RPOD_THEAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|10640345|emb|CAC12159.1| DNA-dependent RNA polymerase, subunit D related protein
[Thermoplasma acidophilum]
Length = 271
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 135/298 (45%), Gaps = 48/298 (16%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIE-----------VNSS 60
VKI +L D Y +FE+ S ANALRR +I ++P +AI+ V +SS
Sbjct: 3 VKIFKLSDKYIRFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDSEGNVYDSS 62
Query: 61 V-LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD 119
+ L DE +AHRLGLIPL ++ ++M F C +C G G C C+V + + S
Sbjct: 63 LPLFDEMVAHRLGLIPLKTD--LTMNFRDQC-SCGGKG-CSLCTVTYSINKLGPS----T 114
Query: 120 VTSKDLYSSDHS-VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
V S DL + H ++PVD P IVKL Q + + A A G K+HA
Sbjct: 115 VFSSDLQAVSHPDLIPVDGEIP-------------IVKLGPKQAILITAEAILGTAKEHA 161
Query: 179 KWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
KW + V++ Y E H+++ E+ Q + P V D E
Sbjct: 162 KWQVTSGVSYKYHREFHVSKK-----DFEDWQKLKGACPKSVMS---------ETDTEIV 207
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
DD + + V + + FIF E+ G++ A + +L A+ LK + D +
Sbjct: 208 FTDDFGCNDLNVLFESDGVNMIEDDSRFIFQFETDGSLTAKETLLYALNRLKDRWDIL 265
>gi|395645094|ref|ZP_10432954.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
gi|395441834|gb|EJG06591.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
Length = 274
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 131/285 (45%), Gaps = 30/285 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++ + D A+F L + AN LRR MI EVPT+AI+ + I NSSVL DE +AHR
Sbjct: 2 QIEFARIDSDSARFVLSGATPAFANTLRRAMIGEVPTLAIEDLRIYDNSSVLFDEILAHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ ++ ++ +D +C+G G C CSV F + + V S DL S D
Sbjct: 62 LGLIPIKTD--LTRFVKQDRCSCEGAG-CPLCSVTFTMSV----EGPGIVYSGDLISDDP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
PV I IVKL GQ++ L A A G +HAKW +
Sbjct: 115 ETRPV-------------HDDIPIVKLFEGQKVVLEARAVLNTGTEHAKWQAVTACGYKT 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P I I E+ + ++ P V ++ +V E + ++ +KA
Sbjct: 162 YPVITITEN------CDACGMCIDECPRGVLELKGRKARVVDGKLEECSL-CKLCEKACL 214
Query: 251 MGKPGL---VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
GL + I + FIF VES G++ ++ +E ++ +
Sbjct: 215 TTGIGLEPAISIGSDTSRFIFVVESDGSLPVPTIIEKGLEYIRNQ 259
>gi|452821148|gb|EME28182.1| DNA-directed RNA polymerase III subunit C5 [Galdieria sulphuraria]
Length = 300
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 22/212 (10%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
EL A + NALRR++ AEVPT+AI+ V I N+SV++DE +AHRLGLIP+ ++
Sbjct: 60 LELVGVAAPLINALRRILFAEVPTMAIEYVLISDNTSVIHDEILAHRLGLIPIQADPDGF 119
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD---------QTLDVTSKDLYSSDHSVVP 134
+ + G+ E ++ L+ +C + + L + S ++YS D P
Sbjct: 120 QDYRK------GEEPRENNTIVLKLQVECKQNPQARPGAEPEELYINS-NVYSRDLVWEP 172
Query: 135 V-DFVDPAGYDSTDQ-QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 192
+ + ++ G + I+I KLR Q + L A KGIGK+HAKWSP AT + P
Sbjct: 173 LGNQLEKFGKNGIRPVSEDILIAKLRPKQRIELEARCIKGIGKEHAKWSPVATAYYAMLP 232
Query: 193 EIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
++ + +D+++ E+ + ++ P KVFD++
Sbjct: 233 QVELLQDILD----EDARRLIQKCPMKVFDLE 260
>gi|301095579|ref|XP_002896889.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
gi|262108536|gb|EEY66588.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
Length = 304
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 128/290 (44%), Gaps = 47/290 (16%)
Query: 7 QRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
+R KVKI+ L DD F+L I V I NSS++ DE
Sbjct: 33 KRQVKVKIQSLTDDEIVFDL-----------------------IGHVYIWNNSSIIQDEV 69
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLY 126
+AHRLGLIPL + ++ F D C D + H +Y
Sbjct: 70 LAHRLGLIPLNATDENTIVFKLDV-TCKFDPE--------------HPKDPTKAIHSSVY 114
Query: 127 SSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
S D VP + I++ KLR GQ + L A RKG+GKDHAK+SP AT
Sbjct: 115 SRDLEWVPQGNQEERFGSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHAKFSPVATA 174
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--QVYVVDAEAYTYDDEV 244
++ P++ +LME + + + VE +FDI+ G V D A T
Sbjct: 175 SYRLMPKV----ELMEKVEGTDAKRLVEECHIGLFDIEDIGGVPTAVVKDQRACTMCRNC 230
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
I++ K + + + D FIF+VES G IK +L+L A+ VL +K +
Sbjct: 231 IREPSWNEK---IRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEKCN 277
>gi|308159629|gb|EFO62154.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia P15]
Length = 326
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 147/304 (48%), Gaps = 24/304 (7%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P +K+ D + E+ D S N LRR + A+VPT++ID+V+ N++ L +EFIAH
Sbjct: 3 PSIKVLSKTDLKLELEISGVDISYVNGLRRAIYADVPTLSIDIVKFLDNNTTLTEEFIAH 62
Query: 70 RLGLIPLTSERAMS-MRFSRDCD-ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYS 127
RLGLIPL + +S + + CD + +C C+ + L S + VT KD++
Sbjct: 63 RLGLIPLKTAGPLSAISYWYTCDEEHSTEIECRECTFKGTLNISNDSTKIRVVTDKDIH- 121
Query: 128 SDHSVVPV--DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
DH + ++++ + + I I+KL G+ + ARK GK HAKW PAA
Sbjct: 122 FDHGGISTLSNYLESSL--GVTETPSIPILKLAPGESINALLYARKDRGKIHAKWCPAAC 179
Query: 186 VTFMYEPEIHINEDLMESLSLEEK---QSWV-ESSPTKVFDI--------DPNTGQVYVV 233
V I I D E L + ++++ E+ P VF I DPN+ ++
Sbjct: 180 VVLRPLARI-ILCDEFERLPQQHNDIARTYISETCPRNVFTIENRRVVVKDPNSC-IFCN 237
Query: 234 DAEAYTYD-DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
D DE + + P LV + ++F F++ES G+I A + L A + + +
Sbjct: 238 DCFNVPISLDEQGESTNTIWHPALVT--QQPNAFYFSIESNGSISAYDIFLMACDEISAR 295
Query: 293 LDAV 296
D +
Sbjct: 296 ADEI 299
>gi|57965352|ref|XP_561116.1| Anopheles gambiae str. PEST AGAP012796-PA [Anopheles gambiae str.
PEST]
gi|55247027|gb|EAL42262.1| AGAP012796-PA [Anopheles gambiae str. PEST]
Length = 234
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 116/208 (55%), Gaps = 19/208 (9%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D S++R ++ + ++ +F++ A +AN RR+M++EVP++AI+ V I N+S+
Sbjct: 33 DFESFKRKLQIVVVRYDENELEFDMIGVTA-IANVFRRLMLSEVPSMAIEKVHIYNNTSI 91
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC--HSDQTLD 119
+ D +AHRLGLIPL ++ M + A + D ++EF L+ KC + + +
Sbjct: 92 IQDGGLAHRLGLIPLRADPRMF-----EYKANETDPPSALDTLEFELKVKCTRKNKDSTE 146
Query: 120 VTSKDLYSSDHSVVP--VDFVDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIA 169
VT+ + +HS+ + +V P G +T I+I K+R G E ++ A
Sbjct: 147 VTNNENMYKNHSIYSGQIKWV-PIGNQATIYTEATVGPIDDDILISKMRPGHEFDIKLFA 205
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHIN 197
KG+GKDHAK+SP ATV++ P+I +N
Sbjct: 206 VKGVGKDHAKFSPVATVSYRLLPDIKLN 233
>gi|15897038|ref|NP_341643.1| DNA-directed RNA polymerase subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|284173382|ref|ZP_06387351.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus 98/2]
gi|384433538|ref|YP_005642896.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
gi|2500627|sp|P95989.1|RPOD_SULSO RecName: Full=DNA-directed RNA polymerase subunit D
gi|167013264|pdb|2PA8|D Chain D, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
gi|167744884|pdb|2PMZ|D Chain D, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744895|pdb|2PMZ|S Chain S, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782146|pdb|3HKZ|D Chain D, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782159|pdb|3HKZ|O Chain O, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|1707823|emb|CAA69531.1| DNA-directed RNA polymerase subunit D [Sulfolobus solfataricus P2]
gi|13813203|gb|AAK40433.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|261601692|gb|ACX91295.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
Length = 265
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 133/269 (49%), Gaps = 40/269 (14%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCD 91
NA+RR + VP +A+D V N+S L DE +AHRL LIP SE A+ + R+ +C
Sbjct: 24 FVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEECI 83
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
C + CE C + ++ A+ ++ + + SKD+ S D SVVP+ S D
Sbjct: 84 ECTEN--CEKCYTKIYIEAEAPNEPRM-IYSKDIKSEDPSVVPI---------SGD---- 127
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I IV L Q++ L A R G GK+HAK+ P + Y P++ I L +
Sbjct: 128 IPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEI---------LANCEK 178
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
V P VF++ G++ V + + T +E ++ G + I ED +I +E
Sbjct: 179 AVNVCPEGVFEL--KDGKLSVKNELSCTLCEECLRYCN-----GSIRISFVEDKYILEIE 231
Query: 272 STGAIKASQLVLNA-------IEVLKQKL 293
S G++K +++L A IE L++KL
Sbjct: 232 SVGSLKPERILLEAGKSIIRKIEELEKKL 260
>gi|307181041|gb|EFN68815.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Camponotus
floridanus]
Length = 344
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 142/298 (47%), Gaps = 22/298 (7%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I +D +F++ D S+ NA RR++I+EVP++AID V I N+S+L DE +AHR
Sbjct: 40 RIEIVREEDKELEFDIIGCDISLVNAFRRILISEVPSMAIDKVFIINNTSLLQDEVLAHR 99
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK------- 123
LGLIPL RA F + E ++++ L+ C + S+
Sbjct: 100 LGLIPL---RADPRLFEYPPSGRKDEEVSEQDTLKYELKVTCTTHPQAPKYSRLPEDMYR 156
Query: 124 --DLYSSDHSVVPVDFVDPAGYDSTDQ----QRGIIIVKLRRGQELRLRAIARKGIGKDH 177
+YS D VP+ T+Q + I+I K+R G E+ A KGIGKDH
Sbjct: 157 NSKVYSKDIKWVPIGRQGDMFPHGTEQFSVLENDILICKMRPGHEIHAFMHAVKGIGKDH 216
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVY---VVD 234
AK+SP A + P I + + + + QS + +V + + ++G+ Y V
Sbjct: 217 AKFSPVAPARYRLMPAIELTKPVRNE-DADLLQSCFSPAVIEVVEKETSSGEKYREARVK 275
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
Y + + E + V++ D IF +ES G + + L A++VLK K
Sbjct: 276 NARYDSCARNVYRYEQLK--DCVKMTRISDHVIFNIESVGTLPPAVLFTEAVKVLKNK 331
>gi|303388073|ref|XP_003072271.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
gi|303301410|gb|ADM10911.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
Length = 305
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 141/288 (48%), Gaps = 33/288 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+++I E + +F+L + D S ANALRR++ +VPT+AI V ++ N SV DEFIAHR
Sbjct: 31 ELRITEYSKEKLEFDLINVDCSFANALRRILCNDVPTMAIKDVFLKENESVFPDEFIAHR 90
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL + M + +G+ E S++F L K + L+V YS D
Sbjct: 91 LGLIPLEVDPEM-------FEFVEGEMN-ERNSLKFSLDVKNENKDVLNV-----YSDDI 137
Query: 131 SVVPV----DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
+P+ + + A + S +++ KL GQ++ + K GK HAKWSP
Sbjct: 138 KWIPLGNQREMIKNAKFSSR-----VLMFKLAHGQKISAEVVCTKNTGKTHAKWSPVCPA 192
Query: 187 TFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQV--YVVDAEAYTYDDEV 244
T+ P I I D + + ++ + E V ++ + G++ YV + T E
Sbjct: 193 TYRLLPLIEIG-DFFDEDAFRIQKCFSEG----VIEVKQSDGRMKAYVSNPRLDTMSREA 247
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
++ E K V I K D F+FT+ S + L+ A+ +L +K
Sbjct: 248 LRHEEFKDK---VFIGRKSDHFLFTINSV-FLDPLYLLRKAVSILIEK 291
>gi|170579941|ref|XP_001895048.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
gi|158598143|gb|EDP36103.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
Length = 339
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 148/300 (49%), Gaps = 55/300 (18%)
Query: 14 IRELKDDYA-KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
+ E KD +F+L +A +ANA+RR++IAE+PT+AI+ V + N+S++ DE ++HR G
Sbjct: 58 VNESKDGMTLEFDLVGVEAPIANAIRRILIAELPTLAIEKVYLYQNTSIIPDEVLSHRFG 117
Query: 73 LIPLTSE-RAMSMRFSR---------DC-DACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
L+P+ ++ R M +R DC + GD F ++ C + T
Sbjct: 118 LLPIKADPRLFKMPLTRVIGIDESGVDCSEEPAGDPTRNLI---FEIKVNCSRNPNALKT 174
Query: 122 SKD---------LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKG 172
+ + +YS+ +P+ Q L KG
Sbjct: 175 ATNPKEIYENAFVYSNSFKWIPIG-----------------------DQSTSLPCHCLKG 211
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV 232
+G+DHAK+SP AT ++ P+I + + + + K S+ E V +ID + G +V
Sbjct: 212 LGRDHAKFSPVATASYRLLPQIVLKKKFSGADARRVKSSFSEG----VIEIDAD-GVAFV 266
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
DA + T +++ + +E+ +D FIF+VESTGA+++++LV+ A +V+++K
Sbjct: 267 KDARSDTCSRNILRYEDLAE---YIELSRIKDHFIFSVESTGALRSAELVVEACKVMEEK 323
>gi|257076683|ref|ZP_05571044.1| DNA-directed RNA polymerase subunit D [Ferroplasma acidarmanus
fer1]
Length = 269
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 153/299 (51%), Gaps = 50/299 (16%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLV------------EIEVNS 59
+KI ELKD++ +F + ++AN++RR +I ++P +AI+ V + +S
Sbjct: 1 MKILELKDNFIRFSIDGITPAIANSIRRTLINDIPKLAIENVIYHHGEIRDADGNVYDSS 60
Query: 60 SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD 119
L DE +A R+GLIPL ++ +SM F +C +C G G C+ C+V + +
Sbjct: 61 LPLFDEILASRIGLIPLKTD--LSMNFRDEC-SCGGKG-CDLCTVTYSINK--------- 107
Query: 120 VTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
+ +YSSD ++PV+ +P + T I IV+L++ Q + + A G GK+HAK
Sbjct: 108 LGPGMVYSSD--IMPVN--NP---ELTVTDPLIPIVELKKNQAMLVTCEAILGRGKEHAK 160
Query: 180 WSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYT 239
W + V++ Y H+N+ +L+ Q + ++ P V + N + D +
Sbjct: 161 WQATSGVSYKYHRNFHVNK-----AALDNWQFYKDTCPKSV--LSENDTTILFTDDIPCS 213
Query: 240 YDDEVIKKAEAMGKPGLVEIYAKEDS--FIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
Y ++ M + G+V +EDS FIF E+ G++KAS ++ A+ L+ + A+
Sbjct: 214 Y------LSQLMERDGVV---VEEDSTKFIFKFETDGSLKASDVLSYALHRLENRFTAL 263
>gi|407407741|gb|EKF31429.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi marinkellei]
Length = 393
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 131/276 (47%), Gaps = 17/276 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F++ +AN RR+M+ EVP +A D + IE N SV+ DE +AHR+GL+P+ +
Sbjct: 105 FDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDEILAHRIGLVPIAGP-VLK 163
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
M+F + + D + F L A+ D S +YS D P+ + A
Sbjct: 164 MQFVTESNQVGFDALDPQRVLVFELAAEGRR----DAKSTSVYSGDLKWKPLPGQE-AWA 218
Query: 144 DSTDQQR------GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
D+ R II+ KL GQ L+LRAIA KGIG HAKW+P + + IH+
Sbjct: 219 TGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAKWTPVSVCFYELYTSIHLR 278
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLV 257
E + + EK + P VF ++ G+ VV E T E +++ +
Sbjct: 279 EPIRGDCA--EKLQRI--CPVGVFGVN-EEGESEVVAVENCTLCRECLRRDVYPEIADKI 333
Query: 258 EIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ + FT+ES G + ASQ+ A+ + +++
Sbjct: 334 VVEKDKTRMRFTIESIGQLHASQIFRYALTLFAERV 369
>gi|337283749|ref|YP_004623223.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
gi|334899683|gb|AEH23951.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
Length = 259
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 138/288 (47%), Gaps = 46/288 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+I E +++ KF L + ANALRR ++ EVPT A+D VE N S L DE IAHR
Sbjct: 3 KVEILEKRENAIKFILEGVSIAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L +IPLT+ RF+ D D ++ + ++ V S DL S D
Sbjct: 63 LAMIPLTTPVD---RFALDSLELD----------DYTVTLSLEAEGPGVVYSGDLKSDDP 109
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV I IVKL GQ L A A+ G GKDHAKW P + Y
Sbjct: 110 DVKPV-------------TPDIPIVKLAEGQRLVFNAYAKLGRGKDHAKWQPGFAY-YKY 155
Query: 191 EPEIHINEDL--MESL-SLEEKQSW-VESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIK 246
+IHI++ + E L SL EK+ VE + +V T + + + E Y+ + I
Sbjct: 156 YTKIHISKSIPGWEKLKSLAEKRGLPVEETDEEVIV---TTLKPFYIPREFEEYESKEIW 212
Query: 247 KAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+ EI ++++FTVE+ G + ++V A+ +L +K D
Sbjct: 213 E----------EIVP--EAYVFTVETNGELPVEEVVGIALRILMRKSD 248
>gi|225717016|gb|ACO14354.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 239
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 110/200 (55%), Gaps = 29/200 (14%)
Query: 2 DGASYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVN 58
D S Q+F K + + ++ + +F++ DAS+ANA RR+++AEVPT+A++ V I N
Sbjct: 39 DTWSLQKFQKNFRIDVVQMDETCMEFDMVGIDASIANAFRRILLAEVPTMAVEKVFIYNN 98
Query: 59 SSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT 117
+S++ DE +A RLGLIP+ ++ R R +A D +G E +++ L+ KC +
Sbjct: 99 TSIIQDEVLAQRLGLIPIKADPRLFEYR-----NAGDEEG-TEIDTIQLQLKIKCTRNHQ 152
Query: 118 LDVTSKD---LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIG 174
S D LY +H V D I++ KLR GQEL + KGIG
Sbjct: 153 ATKDSADPQELY-LNHMVYSKD---------------ILLAKLRPGQELDIVMHCVKGIG 196
Query: 175 KDHAKWSPAATVTFMYEPEI 194
+DHAK+SP AT ++ PEI
Sbjct: 197 QDHAKFSPVATASYRLLPEI 216
>gi|402469296|gb|EJW04273.1| hypothetical protein EDEG_01455 [Edhazardia aedis USNM 41457]
Length = 313
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 132/254 (51%), Gaps = 25/254 (9%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIP-LTSERAM 82
F+L++ D S+ANALRR++IAE+PT+AI+ V + V+ +E +AHRLGL+P L +
Sbjct: 41 FDLKNVDCSIANALRRILIAELPTMAIEYVNFYKYNGVIPEEILAHRLGLLPILIDPKVF 100
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAG 142
+ S D + E +++F L+ + + + + VTS D+ VP+
Sbjct: 101 EYKNSTDTEN-------EKNALKFVLKKQNNMNDIVVVTSDDI-----KWVPLGNQKDTL 148
Query: 143 YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLME 202
+ GI I K+ GQE+ + A KGIGKDHAKWSP V++ P I I +D+ +
Sbjct: 149 VPRPRIKSGIPITKICNGQEIEIEMYAIKGIGKDHAKWSPVCPVSYRLHPAIEI-KDIYD 207
Query: 203 SLSLEEKQSWVESSPTKVFDI----DPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVE 258
+ + ++ + + V D+ + N + +V + T E ++ E GK + +
Sbjct: 208 EDAFKLQKCF----SSGVIDVSRCPETNRMKAFVSNQRLDTMSREALRHPEFDGKVFISK 263
Query: 259 IYAKEDSFIFTVES 272
I + FIF +++
Sbjct: 264 I---PNHFIFKIQT 274
>gi|374628605|ref|ZP_09700990.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
gi|373906718|gb|EHQ34822.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
Length = 274
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 132/288 (45%), Gaps = 36/288 (12%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
++ L ++ AKF L+ T + AN+ RR MI +VPT+AI+ V + N+S L DE + HR
Sbjct: 2 EITFSRLDENAAKFILKGTTFAFANSFRRAMITDVPTLAIEDVYLYDNNSALFDEILTHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+T++ + +R RD +C G+G C C F L + V S DL +
Sbjct: 62 LGLIPITTDLSEYVR--RDECSCGGEG-CSQCQAVFTLSV----EGPGIVMSGDLVPQNP 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VPV+ I IVKL Q++ L A A G +HAKW P +
Sbjct: 115 GAVPVN-------------PDIPIVKLDEDQKVVLEARAELNTGMEHAKWQPTLACGYKA 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P I +++ + VE P V G V+ E+ D + + E
Sbjct: 162 YPVITVSD------RCDGCGKCVEQCPRNVL----KAGSKAVLVIESRLEDCSMCRLCEK 211
Query: 251 ------MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+G + + + +IF VES G++ +++ A++++ K
Sbjct: 212 ACMASDIGDEPAIRVNPHDSDYIFVVESDGSMPVKDIMIRALDIIGNK 259
>gi|171186411|ref|YP_001795330.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
gi|229564213|sp|B1YC30.1|RPOD_THENV RecName: Full=DNA-directed RNA polymerase subunit D
gi|170935623|gb|ACB40884.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
Length = 262
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 103/191 (53%), Gaps = 19/191 (9%)
Query: 9 FPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
P VK+ E + K + S+ N+LRRV+I+E+P +AID V + N+SV+ DE +A
Sbjct: 1 MPAVKVVERTPLFLKAVVEGAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLA 60
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
HRLGLIPLT+ S+ DC++ G C+V F L+ ++D + V S DL S
Sbjct: 61 HRLGLIPLTTP-LQSLPPIEDCES--GLADPSECTVRFTLQV--NADGEVTVYSGDLVSE 115
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
VVPV + I IVKL +GQ + L A A+ G + HAKW AA ++
Sbjct: 116 RPDVVPV-------------HKDIPIVKLVKGQSIVLEAYAKLGRARGHAKWQ-AALASY 161
Query: 189 MYEPEIHINED 199
Y P + + ++
Sbjct: 162 YYYPRVEVRDE 172
>gi|427798089|gb|JAA64496.1| Putative rna polymerase i and iii subunit, partial [Rhipicephalus
pulchellus]
Length = 445
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 20/205 (9%)
Query: 6 YQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
+Q+F K V I + D +F+L D S+ANA+RR+++AEVPT+A D V + N+ ++
Sbjct: 39 FQKFVKKFRVGIISMDDTTIEFDLVGLDPSIANAIRRILLAEVPTMAPDKVYLYNNTGII 98
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL--DV 120
DE +AHR+GL+P + M + D D +VEF L+ KC + D
Sbjct: 99 QDEVLAHRIGLVPFNIDPRMFEYRESESDGSPED------TVEFELKVKCTKNPQAPKDA 152
Query: 121 TSKDLYSSDHSVVPVDFV-DPAGYDS--------TDQQRGIIIVKLRRGQELRLRAIARK 171
T+ D DH V +P G + II+ KLR GQE+ L+ K
Sbjct: 153 TTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVHDDIILAKLRPGQEIDLKLHCVK 212
Query: 172 GIGKDHAKWSPAATVTFMYEPEIHI 196
G G+ HAK+SP AT ++ PEI +
Sbjct: 213 GTGQVHAKFSPVATASYRLLPEIRL 237
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 90/198 (45%), Gaps = 21/198 (10%)
Query: 103 SVEFHLRAKCHSDQTL--DVTSKDLYSSDHSVVPVDFV-DPAGYDS--------TDQQRG 151
+VEF L+ KC + D T+ D DH V +P G +
Sbjct: 255 TVEFELKVKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVHDD 314
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
II+ KLR GQE+ L+ KG G+ HAK+SP AT ++ PEI L+ + E+ +
Sbjct: 315 IILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVATASYRLLPEIR----LLRPVRDEQAER 370
Query: 212 WVESSPTKVFDID--PNTGQV-YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIF 268
V ++D P+ +V V +A A T V + + VE+ +D +IF
Sbjct: 371 LQGCFSKGVIELDDEPDGHKVARVANARADTCSRNVFRFDDLKDA---VELSRVKDHYIF 427
Query: 269 TVESTGAIKASQLVLNAI 286
+VESTGA LV AI
Sbjct: 428 SVESTGAYAPDTLVTEAI 445
>gi|18312091|ref|NP_558758.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
gi|20978701|sp|Q8ZYQ3.1|RPOD_PYRAE RecName: Full=DNA-directed RNA polymerase subunit D
gi|18159521|gb|AAL62940.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
Length = 260
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 128/265 (48%), Gaps = 48/265 (18%)
Query: 32 SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCD 91
S+ N+LRRV+I+E+P +AID V + N+SV+ DE +AHRLGLIPLT+ S+ DC
Sbjct: 24 SLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHRLGLIPLTTP-LQSLPPYEDC- 81
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
G CS L+ D T + S DL S VVPV +
Sbjct: 82 -VSGLADPSECSTRLTLQVTAEGDTT--IYSGDLASDRPDVVPV-------------YKD 125
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLE---E 208
I IVKL +GQ + L A A+ G+ KDHAKW AAT ++ Y P++ + + + E +
Sbjct: 126 IPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ-AATASYYYYPKVVVKSENCREMCKEICRQ 184
Query: 209 KQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIF 268
++ +E S K A+T D + K GL E+ ++ ++F
Sbjct: 185 LENPIECSFNK-----------------AWTCKD--------LCKEGL-EVTWDKNKYVF 218
Query: 269 TVESTGAIKASQLVLNAIEVLKQKL 293
VES G + + A +LK+K
Sbjct: 219 WVESFGNYDVNTALREAFRILKRKF 243
>gi|42571933|ref|NP_974057.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195617|gb|AEE33738.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 302
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 109/220 (49%), Gaps = 32/220 (14%)
Query: 3 GASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
G Y F KV + L +F++ DA+ ANA RR++IAEVP++AI+ V I N+SV+
Sbjct: 68 GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126
Query: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVT 121
DE +AHR+GLIP+ ++ + S + D E ++ F L KC ++ L V
Sbjct: 127 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 180
Query: 122 SKDLY-----------SSDHSVVPVDFV----------DPAGYDSTDQQRGIIIVKLRRG 160
+ DL S + + P + + A T I+I KL G
Sbjct: 181 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 240
Query: 161 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPE---IHIN 197
QE+ L A A KGIGK HAKWSP T + PE I+IN
Sbjct: 241 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVRSIYIN 280
>gi|407038499|gb|EKE39159.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 259
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 24/221 (10%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
VKI E + +F++ D S+AN LRR+MIAEVPT+AI++V +E NSS + DE + HRL
Sbjct: 8 VKISE-SPEKVEFDVMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHRL 66
Query: 72 GLIPLTSERAMSMRFSRD---CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
GLIP+ ++ +F +D D + D ++ F L C D + + +YSS
Sbjct: 67 GLIPILAD-PRKFKFPKDRHFTDPTEED------TIVFTLDVTCTLDSAKNPVNNKVYSS 119
Query: 129 DHSVVP-----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
D P F D D I+I +L+ Q ++ + KGIG+DHAK+SP
Sbjct: 120 DLIWEPQGEQETTFADCPIKPVFDD---ILIAELQPHQHIKCKLFCCKGIGQDHAKFSPV 176
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
T+ P+I I + + +S E K P VFDI+
Sbjct: 177 CPATYRLMPKITIMKQ-SKKMSKEIKN----CCPLNVFDIE 212
>gi|449705384|gb|EMD45440.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative,
partial [Entamoeba histolytica KU27]
Length = 249
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 24/221 (10%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
VKI E + +F++ D S+AN LRR+MIAEVPT+AI++V +E NSS + DE + HRL
Sbjct: 8 VKISE-SPEKVEFDVMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHRL 66
Query: 72 GLIPLTSERAMSMRFSRD---CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
GLIP+ ++ +F +D D + D ++ F L C D + + +YSS
Sbjct: 67 GLIPILAD-PRKFKFPKDRHFTDPTEED------TIVFTLDVTCTLDSAKNPVNNKVYSS 119
Query: 129 DHSVVP-----VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
D P F D D I+I +L+ Q ++ + KGIG+DHAK+SP
Sbjct: 120 DLIWEPQGEQETTFADCPIKPVFDD---ILIAELQPHQHIKCKLFCCKGIGQDHAKFSPV 176
Query: 184 ATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDID 224
T+ P+I I + + +S E K P VFDI+
Sbjct: 177 CPATYRLMPKITIMKQ-SKKMSKEIKN----CCPLNVFDIE 212
>gi|391342311|ref|XP_003745464.1| PREDICTED: uncharacterized protein LOC100901074 [Metaseiulus
occidentalis]
Length = 684
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 153/302 (50%), Gaps = 26/302 (8%)
Query: 4 ASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
A ++R ++ + + D+ +F++ D ++ANA+RR++IAEVPT+A D + + N+S ++
Sbjct: 374 ADFRRKLRMSVVKCTDEDLEFDIIGVDPAIANAIRRILIAEVPTMAADRITLINNTSFIH 433
Query: 64 DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH------SDQT 117
D+ + +R+GL+P+ + + + + A D +V F L +C D T
Sbjct: 434 DKDLTNRIGLVPIRVDSRLFENRNPEQPASSQD------TVVFELHIRCTKNLQAAQDST 487
Query: 118 L--DVTSK-DLYSSDHSVVPVDFVDP--AGYDSTDQQRGIIIVKLRRGQELRLRAIARKG 172
L D+ S +YS + VP++ + A I+I KLR GQE+ ++ KG
Sbjct: 488 LPKDIYSNSSVYSGHLTWVPLEGQEMLFAKNPPKPIHDDILIAKLRPGQEIDMKIEYLKG 547
Query: 173 IGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG--QV 230
IGK HAK+SP AT ++ P I I ED+ + K S+ + V +I+ G
Sbjct: 548 IGKTHAKFSPVATASYRLLPVIEILEDVCGEAARRLKNSFSKG----VVEIEKRNGVDVA 603
Query: 231 YVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLK 290
+V+ T V+ + K V + K D FIF+VES G + + LV +I+V+
Sbjct: 604 KIVNPRMDTCSRNVLMHDDLAEK---VRLGRKLDHFIFSVESVGMLPSDILVKESIKVML 660
Query: 291 QK 292
K
Sbjct: 661 GK 662
>gi|71423439|ref|XP_812461.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70877243|gb|EAN90610.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 17/276 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F++ +AN RR+M+ EVP +A D + IE N SV+ DE +AHR+GL+P+ +
Sbjct: 105 FDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP-VLK 163
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
M+F + + D + F L A+ D S +YS D P+ + A
Sbjct: 164 MQFVTESNQVGFDALDPQRVLVFELAAEGRR----DAKSTSVYSGDLKWKPLPGQE-AWA 218
Query: 144 DSTDQQR------GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
D+ R II+ KL GQ L+LRAIA KGIG HAKW+P + + + I++
Sbjct: 219 TGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAKWTPVSVCFYELKTSIYLR 278
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLV 257
E + + + ++ P VF ++ G+ V + E T E +++ +
Sbjct: 279 EPIRGDCATKLQR----ICPVGVFGVN-EEGESEVAEVENCTLCRECLRRDMYPEIADKI 333
Query: 258 EIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ + FT+ES G + ASQ+ A+ + +++
Sbjct: 334 VVEKDKTRMRFTIESIGQLHASQIFRYALALFAERV 369
>gi|323304520|gb|EGA58286.1| Rpb3p [Saccharomyces cerevisiae FostersB]
Length = 259
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 38/238 (15%)
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL S + +SRDC D C+ CSV L+A S+ T +V SKDL +
Sbjct: 8 LGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVSN 64
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
++ + P D + G++I KLR+GQEL+L +A+KGI K+HAKW PAA + F Y
Sbjct: 65 -LMGRNIGHPIIQDK--EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEY 121
Query: 191 EP--EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
+P ++ + E S +E W +S + ++ PN G + A+A
Sbjct: 122 DPWNKLKHTDYWYEQDSAKE---WPQSKNCE-YEDPPNEGDPFDYKAQA----------- 166
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
D+F VES G+I Q+V+ I+ L++K+ ++ L+ ++ D
Sbjct: 167 ---------------DTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 209
>gi|71656797|ref|XP_816940.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70882101|gb|EAN95089.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 17/276 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F++ +AN RR+M+ EVP +A D + IE N SV+ DE +AHR+GL+P+ +
Sbjct: 105 FDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP-VLK 163
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
M+F + + D + F L A+ D S +YS D P+ + A
Sbjct: 164 MQFVTESNQVGFDALDPQRVLVFELAAEGRR----DAKSTSVYSGDLKWKPLPGQE-AWA 218
Query: 144 DSTDQQR------GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
D+ R II+ KL GQ L+LRAIA KGIG HAKW+P + + + I++
Sbjct: 219 TGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAKWTPVSVCFYELKTSIYLR 278
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLV 257
E + + + ++ P VF ++ G+ V + E T E +++ +
Sbjct: 279 EPIRGDCATKLQR----ICPVGVFGVN-EEGESEVAEVENCTLCRECLRRDVYPEIADKI 333
Query: 258 EIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ + FT+ES G + ASQ+ A+ + +++
Sbjct: 334 VVEKDKTRMRFTIESIGQLHASQIFRYALALFAERV 369
>gi|407847030|gb|EKG02938.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 17/276 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F++ +AN RR+M+ EVP +A D + IE N SV+ DE +AHR+GL+P+ +
Sbjct: 105 FDVERISPPIANMFRRLMMTEVPVLAFDRMLIEENDSVVPDELLAHRIGLVPIAGP-VLK 163
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
M+F + + D + F L A+ D S +YS D P+ + A
Sbjct: 164 MQFVTESNQVGFDALDPQRVLVFELAAEGRR----DAKSTSVYSGDLKWKPLPGQE-AWA 218
Query: 144 DSTDQQR------GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
D+ R II+ KL GQ L+LRAIA KGIG HAKW+P + + + I++
Sbjct: 219 TGADEDRVFLVHPDIILTKLGPGQRLKLRAIALKGIGGVHAKWTPVSVCFYELKTSIYLR 278
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLV 257
E + + + ++ P VF ++ G+ V + E T E +++ +
Sbjct: 279 EPIRGDCATKLQR----ICPVGVFGVN-EEGESEVAEVENCTLCRECLRRDVYPEIADKI 333
Query: 258 EIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ + FT+ES G + ASQ+ A+ + +++
Sbjct: 334 VVEKDKTRMRFTIESIGQLHASQIFRYALALFAERV 369
>gi|517290|emb|CAA56480.1| RNA polymerase subunit D [Sulfolobus acidocaldarius]
Length = 264
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 130/276 (47%), Gaps = 33/276 (11%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+ L + N++RR I VP +A+D V N+S L DE +AHRL L+P S+ A+
Sbjct: 14 RLVLENYPLEFVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEAL 73
Query: 83 S-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
R +C C + C+ C +L + DQ+L + S+DL S D + PV P
Sbjct: 74 EHYRPPEECAECKEN--CDGCYNRVYLDVE-AKDQSLMIYSRDLKSEDQMITPVSGAIP- 129
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
IV L Q++ L A R G GK+H K+SP + Y P++ +
Sbjct: 130 ------------IVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYPKVTV----- 172
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYA 261
L + VE P VF ++ N ++ V + + +E +K G V I +
Sbjct: 173 ----LGNCEKAVEVCPEGVFAMENN--KLVVKNELSCILCEECLKYCA-----GSVSIES 221
Query: 262 KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E+ FI +ES G++K ++++ A + L +KL ++
Sbjct: 222 VENKFILEIESVGSLKPERILIEASKSLLRKLSELK 257
>gi|417409648|gb|JAA51322.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 316
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 115/209 (55%), Gaps = 18/209 (8%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RRV++AEVPT+A++ V + N+S+
Sbjct: 42 DQDRFEKNFRVDVIHMDENTLEFDMVGIDAAIANAFRRVLLAEVPTMAVEKVLVYNNTSI 101
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 102 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNSHAAK 155
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + VP+ D T + I+I +LR GQE+ L
Sbjct: 156 DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDGTIRPVHDDILIAQLRPGQEIDLLMHC 215
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINE 198
KGIGKDHAK+SP AT ++ P+I + E
Sbjct: 216 VKGIGKDHAKFSPVATASYRLLPDITLLE 244
>gi|429962561|gb|ELA42105.1| hypothetical protein VICG_00746 [Vittaforma corneae ATCC 50505]
Length = 233
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 100/178 (56%), Gaps = 21/178 (11%)
Query: 14 IRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGL 73
++EL KF + + S AN+LRR+++ EVP+IAID+VEI+ NS+VL DE +A+RLGL
Sbjct: 5 VKELTKLNIKFTI-SSSVSFANSLRRILLGEVPSIAIDVVEIKENSTVLPDEMVANRLGL 63
Query: 74 IPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVV 133
+P+ + A S+ ++C DG C+ CS++F L+ + +D + V +DL +
Sbjct: 64 VPI--KYAGSLIPKQECKC---DGFCDQCSIKFILKKRNDTDSVISVNGQDLQT------ 112
Query: 134 PVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
D G + +I++L GQ+L + IA G + H K+ P V F Y+
Sbjct: 113 -----DVPGVHCS----AALILRLAPGQKLDMICIATIGTPQTHVKYCPVTVVGFSYD 161
>gi|291334097|gb|ADD93769.1| putative RNA polymerase Rpb3/Rpb11 dimerisation domain protein
[uncultured marine bacterium MedDCM-OCT-S05-C222]
Length = 310
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 137/302 (45%), Gaps = 54/302 (17%)
Query: 26 LRDTDASMANALRRVMIAEVPTIAIDLV------------EIEVNSSVLNDEFIAHRLGL 73
L +TDA+ NA+RR +IA+VP +AID V EI + +VL DE IAHRL +
Sbjct: 19 LSNTDAAQVNAVRRALIADVPKLAIDKVNFTQGVNQDNKGEILESVNVLPDEVIAHRLAM 78
Query: 74 IPLTSERAMSMRFSRDCDACDGDGQ----CEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
IP+ + M DC C + C C V +H+R + S+ + + T + +Y+ D
Sbjct: 79 IPIPTHPDEGMMHPDDCPNCKDLAEESKGCMTCQVLYHIRKEGPSEDS-EETVRTVYAGD 137
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
+ + +D D+ + I + L +GQ L L A A G G+ H+KWSP A V F
Sbjct: 138 LTNISDQM-----FDIRDEHKRIPLTVLSKGQFLELYAFATLGRGRQHSKWSPVAAVGFR 192
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV----- 244
+N + K++ V +FD+ T +DA+ + D +
Sbjct: 193 QHCIAKLN---------KPKKAKV------LFDLGLTTSDGNPIDAKLFGKDKTMTDVNH 237
Query: 245 ---IKKAEAMGKPGL---------VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
++KA PG + + E S+IFT E+ G++ Q A+ L+ +
Sbjct: 238 LLDLEKALHQVGPGTNRDVEFDDAITLEPVEGSYIFTYETDGSLSPEQAFNGAMMELQGR 297
Query: 293 LD 294
D
Sbjct: 298 FD 299
>gi|70605933|ref|YP_254803.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449066125|ref|YP_007433207.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449068401|ref|YP_007435482.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
gi|73920766|sp|P39471.2|RPOD_SULAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|68566581|gb|AAY79510.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449034633|gb|AGE70059.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449036909|gb|AGE72334.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
Length = 264
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 33/276 (11%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+ L + N++RR I VP +A+D V N+S L DE +AHRL L+P S+ A+
Sbjct: 14 RLVLENYPLEFVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEAL 73
Query: 83 S-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
R +C C + C+ C +L + DQ L + S+DL S D + PV P
Sbjct: 74 EHYRPPEECAECKEN--CDGCYNRVYLDVE-AKDQPLMIYSRDLKSEDQMITPVSGAIP- 129
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
IV L Q++ L A R G GK+H K+SP + Y P++ +
Sbjct: 130 ------------IVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYPKVTV----- 172
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYA 261
L + VE P VF ++ N ++ V + + +E +K G V I +
Sbjct: 173 ----LGNCEKAVEVCPEGVFAMENN--KLVVKNELSCILCEECLKYCA-----GSVSIES 221
Query: 262 KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
E+ FI +ES G++K ++++ A + L +KL ++
Sbjct: 222 VENKFILEIESVGSLKPERILIEASKSLLRKLSELK 257
>gi|355712707|gb|AES04439.1| polymerase I polypeptide C, 30kDa [Mustela putorius furo]
Length = 305
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 115/209 (55%), Gaps = 18/209 (8%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + L ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 40 DQNRFEKNFRVDVVHLDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 99
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 100 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 153
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + VP+ + T + I+I +LR GQE+ L
Sbjct: 154 DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 213
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINE 198
KGIGKDHAK+SP AT ++ P+I + E
Sbjct: 214 VKGIGKDHAKFSPVATASYRLLPDITLLE 242
>gi|119872211|ref|YP_930218.1| RNA polymerase, insert [Pyrobaculum islandicum DSM 4184]
gi|166229321|sp|A1RSE3.1|RPOD_PYRIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|119673619|gb|ABL87875.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum islandicum DSM
4184]
Length = 262
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 98/188 (52%), Gaps = 19/188 (10%)
Query: 9 FPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
PK I E + K + S+ N++RRV+I+E+P +AID V I N+SV+ DE +A
Sbjct: 1 MPKATIVEKTPLFLKAVIEGAYPSLVNSIRRVIISELPVMAIDYVVIVSNTSVMYDEMLA 60
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
HRLGL+PLT+ ++ DC+ G C+V L+ SD+ V S DL S
Sbjct: 61 HRLGLVPLTTP-LQALPPIEDCET--GLVDPSECTVRLMLQINAESDKI--VYSGDLVSE 115
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
VVPV + I IVKL +GQ + L A A+ G K+HAKW AA ++
Sbjct: 116 RPDVVPV-------------YKDIPIVKLVKGQSIILEAYAKLGRAKEHAKWQ-AALASY 161
Query: 189 MYEPEIHI 196
Y P I +
Sbjct: 162 YYYPRIKV 169
>gi|218191485|gb|EEC73912.1| hypothetical protein OsI_08749 [Oryza sativa Indica Group]
Length = 332
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 135/308 (43%), Gaps = 73/308 (23%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+I L +D +F++ DAS+ANA RR++IAE+PT+AI+ V + N+SV+ DE ++HR
Sbjct: 71 KVEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHR 130
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSKDL-YSS 128
LGLIPL ++ S + D E ++ + L C L V S DL +
Sbjct: 131 LGLIPLDADPRHFEYMS------ENDVPNERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 184
Query: 129 DHSVVPVDFVDPA-------GYDSTDQQ-------------RGIIIVKLRRGQELRLRAI 168
+ S +P+ PA Y S Q + I I +L GQ + L
Sbjct: 185 EGSRLPL--ASPAQSRYKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIVLEVH 242
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
KG+GK HAKWSP AT + PE+ ++ + + + V+ P VFDI
Sbjct: 243 GVKGMGKVHAKWSPVATAWYRMFPEVVFRKE----IKGDNAEKLVKKCPVNVFDI----- 293
Query: 229 QVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEV 288
ED T+ESTG + L A+ +
Sbjct: 294 ----------------------------------EDLGNVTIESTGGLPPEALFTEAVRI 319
Query: 289 LKQKLDAV 296
L++K + V
Sbjct: 320 LEEKCERV 327
>gi|37935546|gb|AAP69818.1| RNA polymerase subunit I [Bos taurus]
Length = 250
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 24/197 (12%)
Query: 17 LKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 76
+ ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S++ DE +AHRLGLIP+
Sbjct: 3 MDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI 62
Query: 77 TSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC---------HSDQTLDVTSKDLY 126
++ R R D +G E +++F L+ +C SD + +Y
Sbjct: 63 HADPRLFEYRNQGD------EGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVY 116
Query: 127 SSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+ + VP+ F + A D I+I +LR GQE+ L KGIGKDHAK+S
Sbjct: 117 TRHMTWVPLGNQADLFPEGAIRPVHDD---ILIAQLRPGQEIDLLMHCVKGIGKDHAKFS 173
Query: 182 PAATVTFMYEPEIHINE 198
P AT ++ P+I + E
Sbjct: 174 PVATASYRLLPDITLLE 190
>gi|379005500|ref|YP_005261172.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
gi|375160953|gb|AFA40565.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
Length = 273
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 140/295 (47%), Gaps = 44/295 (14%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
+ ++Q P+V I E + K + S+ N+LRRV+I+E+P +AID V + N+SV
Sbjct: 8 EAEAHQVMPRVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSV 67
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
+ DEF+A RLGLIPLT+ S+ +C G C L+ D T V
Sbjct: 68 MYDEFLAQRLGLIPLTTP-LHSLPTYEECAT--GVADPTECGTRLVLQVTADGDVT--VY 122
Query: 122 SKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
S DL S VVPV + I IVKL +GQ + + A A+ GI KDHAKW
Sbjct: 123 SGDLASERPDVVPV-------------YKDIPIVKLVKGQSIVIEAYAKLGIAKDHAKWQ 169
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-GQVYVVDAEAYTY 240
AAT ++ Y P++ I ++ + E I P+ + +A+T
Sbjct: 170 -AATASYYYYPKVIIKDEKCREICKE---------------ICPDLEDPIKCTFNKAWTC 213
Query: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
D + K GL ++ +++ ++F VES G + A +LK+K +A
Sbjct: 214 KD--------LCKGGL-DVEWEKNKYVFWVESFGNYDVDVALKEAFRILKRKFEA 259
>gi|13541396|ref|NP_111084.1| DNA-directed RNA polymerase subunit D [Thermoplasma volcanium GSS1]
gi|20978715|sp|Q97B93.1|RPOD_THEVO RecName: Full=DNA-directed RNA polymerase subunit D
gi|14324779|dbj|BAB59706.1| DNA-directed RNA polymerase D [Thermoplasma volcanium GSS1]
Length = 271
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 135/295 (45%), Gaps = 54/295 (18%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIE-----------VNS 59
+VKI +L D Y FE+ S ANALRR +I ++P +AI+ V +S
Sbjct: 2 EVKIFKLSDKYMSFEIDGITPSQANALRRTLINDIPKLAIENVTFHHGEIRDAEGNVYDS 61
Query: 60 SV-LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL 118
S+ L DE +AHRLGLIPL ++ +S+ F C +C G G C C+V + + +
Sbjct: 62 SLPLFDEMVAHRLGLIPLKTD--LSLNFRDQC-SCGGKG-CSLCTVTYSINKIGPA---- 113
Query: 119 DVTSKDLYSSDHS-VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDH 177
V S D+ + H +VPVD I IVKL Q + + A A G K+H
Sbjct: 114 SVMSGDIQAISHPDLVPVD-------------PDIPIVKLGAKQAILITAEAILGTAKEH 160
Query: 178 AKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWV---ESSPTKVFDIDPNTGQVYVVD 234
AKW + V + Y E +N+ L E W E P V D NT +V
Sbjct: 161 AKWQVTSGVAYKYHREFEVNKKLFE--------DWAKIKERCPKSVLSEDENT----IVF 208
Query: 235 AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
+ Y +D I + + V+I + FIF E+ G++ A + + A+ L
Sbjct: 209 TDDYGCNDLSI-----LFESDGVQIKEDDSRFIFHFETDGSLTAEETLSYALNRL 258
>gi|123464689|ref|XP_001317116.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121899842|gb|EAY04893.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 341
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 142/305 (46%), Gaps = 35/305 (11%)
Query: 13 KIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
++ E +D F+L + AS ANALRR ++A VP+IAI+LV + N+ V+ DE + HRLG
Sbjct: 37 QLAETGEDRLVFDLTNAPASHANALRRTLLASVPSIAIELVGMLDNTGVMPDEVLCHRLG 96
Query: 73 LIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSV 132
LIP+ ++ ++ + + D F L T D+++ D +S
Sbjct: 97 LIPINADPSLLDYPKQKIEDKSSDPNEVLL---FGLHVIGGRGPTPDLSNVD--ASMEEN 151
Query: 133 VPVDFVDPA---------------GYDSTDQQRG--------IIIVKLRRGQELRLRAIA 169
+P ++D + Y+ ++ G I I K+ GQ + L A
Sbjct: 152 LPPTYIDGSIENPGEILSSHLVWMPYEGQREKFGNVAPLHADIPITKILPGQTIHLYCRA 211
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
KGIG DHAK+ P T + P I + +++ + S +++Q + P VFDI+ +
Sbjct: 212 IKGIGSDHAKFQPVCTAFYRLVPSIQVKDEI--NSSEKKQQKLISKCPMGVFDIE--DSK 267
Query: 230 VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
+ V T E I+ V + + + + FTVES G A LV A+++L
Sbjct: 268 LVVRSPRKCTTCRECIRNPSLA---HYVSLGKEANHYEFTVESVGVRPAYVLVKEALQIL 324
Query: 290 KQKLD 294
+ + D
Sbjct: 325 QNRCD 329
>gi|335774431|gb|AEH58393.1| DNA-directed RNA polymerases I and III subuni RPAC1-like protein,
partial [Equus caballus]
Length = 267
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 24/221 (10%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDHFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C +
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 121 TSKD---LYSSDHSVVPVDFV-DPAGYDSTDQQRG--------IIIVKLRRGQELRLRAI 168
S D LY +H V + P G + G I+I +LR GQE+ L
Sbjct: 155 DSSDPSELY-VNHKVYTRHMIWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMH 213
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINE----DLMESLS 205
KGIGKDHAK+SP AT ++ P+I + E D E LS
Sbjct: 214 CVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELS 254
>gi|374633843|ref|ZP_09706208.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
gi|373523631|gb|EHP68551.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
Length = 262
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 41/293 (13%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+K+ E + + + N++RR + VP +A+D V + N+S L DE +AHRL
Sbjct: 3 IKVIEEEKGHINLLIHGYPLEFVNSVRRACMLFVPVMAVDEVYVIENNSPLYDEVLAHRL 62
Query: 72 GLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LIP S A+ R +C+ C + CE C + ++ Q + V S+D+ + D
Sbjct: 63 ALIPFESNDAIDYYRRPEECENCTEN--CERCFTKIYIDVSAEETQKM-VYSRDIKTEDP 119
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP+ R I IV L + Q++ L A R G GK+HAK+ P + Y
Sbjct: 120 HVVPIS-------------RDIPIVLLGKNQKVSLEAKVRLGYGKEHAKFMPVSKAVSRY 166
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P++ + ++ + VE P VF + G++ V + A T +E +K +
Sbjct: 167 RPKVEVEKNC---------EKAVEVCPEGVFKL--VDGKLTVENELACTLCEECLKYCQG 215
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGA-------IKASQLVLNAIEVLKQKLDAV 296
+++ A +I VES G I+A++ +L+ +E LK+K++++
Sbjct: 216 ------IKVSAVPGEYILEVESVGTLDARRILIEATKSILSKVEELKKKVESL 262
>gi|326915378|ref|XP_003203995.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Meleagris gallopavo]
Length = 266
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 133/278 (47%), Gaps = 31/278 (11%)
Query: 42 IAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCE 100
+ EVPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R D + + D
Sbjct: 1 LPEVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEEGTEID---- 56
Query: 101 FCSVEFHLRAKCHSDQTLDVTSKD---------LYSSDHSVVPV----DFVDPAGYDSTD 147
+++F L+ KC + S D +YS + VP+ D A +
Sbjct: 57 --TLQFQLKIKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPVH 114
Query: 148 QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLE 207
I+I LR GQE+ + KGIGKDHAK+SP AT ++ P+I L++ + E
Sbjct: 115 DD--ILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDI----TLLQPIEDE 168
Query: 208 EKQSWVESSPTKVFDIDPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDS 265
++ + V +I G+ V +A T+ EV + G LV + +
Sbjct: 169 AAETLQKCFSPGVIEIQNIKGKKVARVANARLDTFSREVFRHE---GLKNLVRLARVRNH 225
Query: 266 FIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTV 303
+IF+VESTG + LV AI++L K DTV
Sbjct: 226 YIFSVESTGILPPDVLVTEAIKILMGKCQRFLNELDTV 263
>gi|302348806|ref|YP_003816444.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
gi|302329218|gb|ADL19413.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
Length = 287
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 129/292 (44%), Gaps = 35/292 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV I EL + + + NALRR+ ++EVPT+A+D V N S + DE IAHR
Sbjct: 5 KVSIVELGNSRITVSMEGFPVAYGNALRRLALSEVPTMAVDFVYFYDNESSVYDEIIAHR 64
Query: 71 LGLIPLTSERAMSMRFS-RDC-DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
LGL+ L S+ A+ S +C +A + D C F V + + V + DL S
Sbjct: 65 LGLLVLRSDEALRKYGSPEECSNASENDSHC-FAQVYLEYEVPQDAASGVYVKASDLKFS 123
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
D + P+ Y T IV L GQ + L AR G G +H KWSPA+
Sbjct: 124 DPDIRPI-------YPETP------IVYLAPGQRIHLVGYARLGRGYEHGKWSPASVAVL 170
Query: 189 MYEPEIHINEDLMESLSLEEKQSW------VESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
Y + + + S LE ++ ++ +++ Y V+ A Y +
Sbjct: 171 RYSVHVEYDPSKVTSECLECISAYQDLVGAIKGGSAGRLELN------YKVNTSALRYCE 224
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
E K G +++ TVESTGA++ ++++ A L +K D
Sbjct: 225 EESCK-------GAIKVVYDPSKLYLTVESTGALEPARIIWEATNCLARKAD 269
>gi|330506856|ref|YP_004383284.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
gi|328927664|gb|AEB67466.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
Length = 264
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 131/280 (46%), Gaps = 31/280 (11%)
Query: 13 KIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
++ EL++D ++ L A+ AN +RR ++EVP +AID + + N+SVL DE I R+G
Sbjct: 4 ELLELREDRIRYLLSGVSAAFANGIRRACMSEVPILAIDEINLYDNTSVLFDEQIGLRIG 63
Query: 73 LIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSV 132
+PL ++ DC C G G C C V+F L + +YS D
Sbjct: 64 EVPLVADELDLFSQPEDCQ-CGGTG-CPGCRVDFMLSKE---------GPGMVYSED--- 109
Query: 133 VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 192
+ F DP + D+ I +V L G++L + A K +GK+H+KW + P
Sbjct: 110 --IQFTDPGVRPAFDK---IPLVILGEGEKLVMEGYATKRVGKEHSKWQAGTLCGYKNLP 164
Query: 193 EIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMG 252
I ++E + + VE+ P + I+ G+ + + + EA
Sbjct: 165 SITVSE------ACDGCGKCVEACPRDILVIE--EGRAKATNILECSLCKLCVGACEAAA 216
Query: 253 KPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+++ DSF+ ++E +G++ A LV A++ +K +
Sbjct: 217 ----IDLKPIHDSFVVSIEGSGSVAAKDLVARAVDEIKMR 252
>gi|3335138|gb|AAC39892.1| RNA polymerase I 40kD subunit [Homo sapiens]
gi|119624609|gb|EAX04204.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_a [Homo
sapiens]
Length = 342
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 115/209 (55%), Gaps = 18/209 (8%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINE 198
KGIGKDHAK+SP AT ++ P+I + E
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDITLLE 243
>gi|332824146|ref|XP_003311364.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Pan troglodytes]
Length = 342
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 115/209 (55%), Gaps = 18/209 (8%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ +V + + ++ +F++ DA++ANA RR+++AEVPT+A++ V + N+S+
Sbjct: 41 DQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSI 100
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC-------- 112
+ DE +AHRLGLIP+ ++ R R D + + D +++F L+ +C
Sbjct: 101 VQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEID------TLQFRLQVRCTRNPHAAK 154
Query: 113 -HSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIA 169
SD + +Y+ + +P+ + T + I+I +LR GQE+ L
Sbjct: 155 DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHC 214
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINE 198
KGIGKDHAK+SP AT ++ P+I + E
Sbjct: 215 VKGIGKDHAKFSPVATASYRLLPDITLLE 243
>gi|145592521|ref|YP_001154523.1| RNA polymerase, insert [Pyrobaculum arsenaticum DSM 13514]
gi|166229319|sp|A4WNA4.1|RPOD_PYRAR RecName: Full=DNA-directed RNA polymerase subunit D
gi|145284289|gb|ABP51871.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum arsenaticum DSM
13514]
Length = 259
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 136/288 (47%), Gaps = 44/288 (15%)
Query: 9 FPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
P+V I E + K + S+ N+LRRV+I+E+P +AID V + N+SV+ DEF+A
Sbjct: 1 MPRVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSVMYDEFLA 60
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
RLGLIPLT+ S+ +C G C L+ D T V S DL S
Sbjct: 61 QRLGLIPLTTP-LHSLPTYEECAT--GVADPTECGTRLVLQVTADGDVT--VYSGDLTSE 115
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
VVPV + I IVKL +GQ + + A A+ GI KDHAKW AAT ++
Sbjct: 116 RPDVVPV-------------YKDIPIVKLVKGQSIVIEAYAKLGIAKDHAKWQ-AATASY 161
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNT-GQVYVVDAEAYTYDDEVIKK 247
Y P++ I ++ + E I P+ V +A+T D
Sbjct: 162 YYYPKVIIKDEKCREICKE---------------ICPDLEDPVKCTFNKAWTCKD----- 201
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
+ K GL ++ +++ ++F VES G + A +LK+K +A
Sbjct: 202 ---LCKGGL-DVEWEKNKYVFWVESFGNYGVDVALKEAFRILKRKFEA 245
>gi|395534244|ref|XP_003769156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sarcophilus harrisii]
Length = 310
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 134/276 (48%), Gaps = 25/276 (9%)
Query: 44 EVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFC 102
+VPT+A++ V + N+S++ DE +AHRLGLIP+ ++ R R D D + D
Sbjct: 47 KVPTMAVEKVFVYNNTSIVQDEILAHRLGLIPIRADPRLFEYRNQGDEDGTEID------ 100
Query: 103 SVEFHLRAKCHSDQTLDVTSKD---------LYSSDHSVVPVDF---VDPAGYDSTDQQR 150
+++F L+ KC + S D +Y+ + +P+ V P G
Sbjct: 101 TLQFQLKVKCTRNPQAAKDSSDPNELYLNHKVYTKHMTWIPLGNQADVFPEGTIRPVHD- 159
Query: 151 GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQ 210
I+I +LR GQEL L KGIGKDHAK+SP AT ++ P+I + + + E + EE
Sbjct: 160 DILIAQLRPGQELDLVMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPV-EGEAAEELS 218
Query: 211 SWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTV 270
+V DI V + T+ E+ + E + K LV + D +IF+V
Sbjct: 219 RCFSPGVIQVQDIK-GKKVATVANPRLDTFSREIFRH-ENLKK--LVRLARVRDHYIFSV 274
Query: 271 ESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
ESTG + LV AI+VL K D+V+ D
Sbjct: 275 ESTGVLPPEVLVSEAIKVLMGKCRRFLDELDSVQMD 310
>gi|350403568|ref|XP_003486838.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus impatiens]
Length = 505
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 26/202 (12%)
Query: 14 IRELKDDY-AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
IRE +D+ +F+L ANA RRV+++EVPT+AI+ V I N+S++ DE +AHRLG
Sbjct: 45 IRESEDERELEFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTSLIQDEVLAHRLG 104
Query: 73 LIPLTSERAM----SMRFSRDCDACDGDGQCEFCSVEFHLRAKCH--------SDQTLDV 120
L+PL ++ + S + + D D ++ + L+ C S +T D+
Sbjct: 105 LVPLQADPRLFEYPSSTIKNEDEVSDQD------TLRYELKVSCTWNPQAPKDSRRTNDM 158
Query: 121 -TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIG 174
+ ++YS D VP+ Y +Q G I+I K+R GQE+ + A KGIG
Sbjct: 159 YRNSNVYSKDIKWVPIG-RQAELYPRGAEQLGVLEDDILICKMRPGQEIHVFMHAVKGIG 217
Query: 175 KDHAKWSPAATVTFMYEPEIHI 196
KDHAK+SP AT ++ P+I +
Sbjct: 218 KDHAKFSPVATASYRLLPDIQL 239
>gi|269860747|ref|XP_002650092.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
gi|220066464|gb|EED43944.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
Length = 245
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 134/259 (51%), Gaps = 31/259 (11%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+++ EL KF + +++ S ANALRR+++ E P +AID +E+E N+S+ DE +A+R
Sbjct: 5 KLELLELTSTNIKFTI-NSNVSFANALRRILLGETPIVAIDYIEVEENTSIFPDEMLANR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LG +PL ++ + + + C + C+ C++ L + + ++V KDL +
Sbjct: 64 LGFLPLENKNNLKDK-----NNCTCENYCDDCALVLILNKTNKTSENINVLGKDLI-IEG 117
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD----HAKWSPAATV 186
S P + ++ I KL Q L+++ IARKG+ ++ HAK+ P + V
Sbjct: 118 SGRPANLLN-----------NTFICKLAPNQTLKIKCIARKGLVRNGSITHAKYCPVSAV 166
Query: 187 TFMYE---PEIHINEDLMESLSLEEKQSWVESSPTKVFD---IDPNTGQVYVVDAEAYTY 240
+F Y+ + H N +++E ++ PT+ FD +D T V +V+
Sbjct: 167 SFYYDKNNAKKHTNLWTENQETIKETWPFINEDPTE-FDYSKVDQITMNVEIVEGVGKPK 225
Query: 241 DDEVIKKAEAMGKPGLVEI 259
D ++ KA ++ K +++I
Sbjct: 226 D--ILYKALSIYKEKMIQI 242
>gi|157868180|ref|XP_001682643.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
gi|68126098|emb|CAJ07151.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
Length = 442
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 140/317 (44%), Gaps = 61/317 (19%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
FE+++ +AN LRRV+ EVPT+A D V IE N S + DE ++HRLGL+P+ M
Sbjct: 122 FEMQNVSPPIANLLRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGP-VMK 180
Query: 84 MRFSRDCDACDGDGQCEFCSVE------FHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF 137
M + + + Q F +++ F L A D + +YS VP+
Sbjct: 181 MHYITESN------QASFSNLDPSRVLLFELDATGAKDAAV----TPVYSGQLQWVPLPG 230
Query: 138 VD-PAGYDSTDQQRG----------------------------IIIVKLRRGQELRLRAI 168
D AG + Q G I++ KL GQ ++L+AI
Sbjct: 231 QDKTAGAVAVACQAGREECAGAAGATDHSADEDDDAVFLVHPDILLTKLGPGQRIKLKAI 290
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
A KG G HAKWSP + + E+ + +L E L+ ++ ++S P VF + G
Sbjct: 291 AVKGFGAVHAKWSPVSACYY----EMKTSVELCERLTGSAAEALIKSCPAGVFGYE--GG 344
Query: 229 Q----VYVVDAEAYTYDDEVI----KKAEAMGKPG-LVEIYAKEDSFIFTVESTGAIKAS 279
Q VV E T E + K AEA G V + + +F +ES G + +
Sbjct: 345 QRGAAATVVAPEKCTLCRECLRSEDKGAEAAANKGDRVRVQKDKTHVLFHIESVGQLHPA 404
Query: 280 QLVLNAIEVLKQKLDAV 296
Q++ + + ++ A+
Sbjct: 405 QILRFGLRLFAERCRAL 421
>gi|328785531|ref|XP_625072.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Apis mellifera]
Length = 510
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 15/187 (8%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F+L ANA RRV+++EVPT+AI+ V I N+S++ DE +AHRLGLIPL ++ +
Sbjct: 55 EFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTSLIQDEVLAHRLGLIPLRADPRL 114
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCH--------SDQTLDV-TSKDLYSSDHSVV 133
S A D D + ++ + L+ C S +T D+ + ++YS D V
Sbjct: 115 FEYPSS--TAKDQDEVSDQDTLRYELKISCTWNSQAPKDSRRTNDMYRNSNVYSRDIKWV 172
Query: 134 PVDFVDPAGYDSTDQ----QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
P+ T+Q + I+I K+R GQE+ A KGIGKDHAK+SP AT ++
Sbjct: 173 PIGHQAELYPRGTEQLSVLENDILICKMRPGQEIHAFMHAVKGIGKDHAKFSPVATASYR 232
Query: 190 YEPEIHI 196
P+I I
Sbjct: 233 LLPDIQI 239
>gi|88604132|ref|YP_504310.1| DNA-directed RNA polymerase subunit D [Methanospirillum hungatei
JF-1]
gi|88189594|gb|ABD42591.1| DNA-directed RNA polymerase, subunit D [Methanospirillum hungatei
JF-1]
Length = 272
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 139/287 (48%), Gaps = 30/287 (10%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K++ L+++ A F L D + ANALRR M++EV T AI+ V+I N+S L DE + HR
Sbjct: 2 KIEFSSLEENAASFVLSDAPIAFANALRRAMVSEVMTFAIEDVKIYDNTSALFDEILTHR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIPL ++ + S+ +C+G G C C+V + + V S DL S D
Sbjct: 62 LGLIPLVTDPDSFVPRSQ--CSCNGAG-CPRCTVTLTMSV----EGPGVVMSGDLISQDA 114
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V P + I IVKL + Q++ + A A G +HAKWSP +
Sbjct: 115 VVRPA-------------EDNIPIVKLEKNQKVVIEAQAYMERGMEHAKWSPTTVCGYKN 161
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA-- 248
P I +++ + L VE P ++ ++ + V E+ + + ++A
Sbjct: 162 YP-IITHDERCDGCGL-----CVEVCPKEILEVKGSAVGVKDGGLESCSL-CRLCEQACL 214
Query: 249 -EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+G + I + F+FTVES G++ +++ + + LK++ D
Sbjct: 215 NSGIGDEPAIHIGMDDRRFLFTVESAGSLPTVRIIKHGLLFLKKQSD 261
>gi|340722889|ref|XP_003399833.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus terrestris]
Length = 505
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 26/202 (12%)
Query: 14 IRELKDDY-AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
IRE +D+ +F+L ANA RRV+++EVPT+AI+ V I N+S++ DE +AHRLG
Sbjct: 45 IRESEDERELEFDLIGYPVGFANAFRRVLLSEVPTMAIEKVYIVNNTSLIQDEVLAHRLG 104
Query: 73 LIPLTSERAM----SMRFSRDCDACDGDGQCEFCSVEFHLRAKCH--------SDQTLDV 120
LIPL ++ + S + + D D ++ + L+ C S +T D+
Sbjct: 105 LIPLQADPRLFEYPSSTIKDEDEVSDQD------TLRYELKVSCTWNPQAPKDSRRTNDM 158
Query: 121 -TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG-----IIIVKLRRGQELRLRAIARKGIG 174
+ ++YS D VP+ Y +Q G I+I K+R GQE+ + A KGIG
Sbjct: 159 YRNSNVYSKDIKWVPIG-RQAEIYPRGAEQLGVLEDDILICKMRPGQEIHVFMHAVKGIG 217
Query: 175 KDHAKWSPAATVTFMYEPEIHI 196
KDHAK+SP AT ++ P+I +
Sbjct: 218 KDHAKFSPVATASYRLLPDIQL 239
>gi|219852957|ref|YP_002467389.1| DNA-directed RNA polymerase subunit D [Methanosphaerula palustris
E1-9c]
gi|219547216|gb|ACL17666.1| RNA polymerase insert [Methanosphaerula palustris E1-9c]
Length = 273
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 125/279 (44%), Gaps = 30/279 (10%)
Query: 17 LKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 76
L + A++ L S NA+RR M +EVP +AI+ ++I N+S L DE +AHR+GL+PL
Sbjct: 8 LDNTVARYTLTGVSPSFINAIRRAMCSEVPKLAIEDIKIYDNTSALFDEMLAHRIGLVPL 67
Query: 77 TSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVD 136
+ + S D C+G G C+ CS + L + V S+DL SD VPVD
Sbjct: 68 KTNS--DLYVSADRCTCEGAG-CDRCSTMYTLSV----EGPGMVYSRDLIPSDPEAVPVD 120
Query: 137 FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
I IVKL +GQ++ + A A +GK HAKW P + P I +
Sbjct: 121 -------------EKIPIVKLEKGQKVVIEARAEMNLGKVHAKWQPTINCGYKNYPVITV 167
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMG---K 253
+ + V+ P V + V E+ + K + G +
Sbjct: 168 ET------HCDACGTCVDQCPRDVLVLKGGVLTVEEGKLESCSLCKLCEKACLSTGIGDE 221
Query: 254 PGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG + I FI VES G++ ++ ++ LK +
Sbjct: 222 PG-IRISDDATRFIGVVESDGSLPVRTIIRQSLLYLKNE 259
>gi|194860382|ref|XP_001969570.1| GG23887 [Drosophila erecta]
gi|190661437|gb|EDV58629.1| GG23887 [Drosophila erecta]
Length = 117
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSERAMS-MRFSRD 89
F+AHR+GLIPL S+ + ++++RD
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRD 87
>gi|154335916|ref|XP_001564194.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061228|emb|CAM38250.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 446
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 140/316 (44%), Gaps = 58/316 (18%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
FEL+ ++N RRV++ EVPT+A D V IE N S + DE ++HRLGLIP+ M
Sbjct: 125 FELQHVSPPISNLFRRVLMTEVPTLAFDRVLIEENDSPVLDELLSHRLGLIPVAGP-VMK 183
Query: 84 MRFSRDCDACDGDGQCEFCSVE------FHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF 137
M++ + + Q F +++ F L A D + +YS VP+
Sbjct: 184 MQYITESN------QASFTNLDPSRILLFELDAMGAKDAAV----TPVYSHQLQWVPLPG 233
Query: 138 VDP-------AGYDSTDQQRG-----------------------IIIVKLRRGQELRLRA 167
+ AG D+ + +RG I++ KL GQ ++L+A
Sbjct: 234 QEKKGGAKVGAGADAREAERGGDAGAAEFNTDDDDDAVFLVHPDILLTKLGPGQRIKLKA 293
Query: 168 IARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI-DPN 226
IA KG G HAKW P + + E+ + +L E L+ ++ V+S P VF D
Sbjct: 294 IAVKGFGAVHAKWCPVSACYY----EMKTSVELRERLTGSAAEALVKSCPAGVFGYEDGQ 349
Query: 227 TGQVYVVDA-EAYTYDDEVIKK-----AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQ 280
G V A E T E ++ A A + V + + IF +ES G + +Q
Sbjct: 350 KGAAATVLAPEKCTLCRECLRSDDNAGAAAASEGDRVRVQKDKTHVIFHIESVGQLHPAQ 409
Query: 281 LVLNAIEVLKQKLDAV 296
++ + + ++ A+
Sbjct: 410 ILRFGLRLFAERCRAL 425
>gi|383850329|ref|XP_003700748.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Megachile rotundata]
Length = 509
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 16/197 (8%)
Query: 14 IRELKDDY-AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLG 72
+RE +D+ +F+L +ANA RRV+++EVP++AI+ V I N+S+L DE +AHRLG
Sbjct: 44 VRESEDERELEFDLIGYPVGLANAFRRVLLSEVPSMAIEKVYIVNNTSLLQDEVLAHRLG 103
Query: 73 LIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK--------- 123
LIPL ++ + S A D D + ++ + L+ C + S+
Sbjct: 104 LIPLQADPRLFDYPSS--TAKDEDEVSDQDTLRYELKVTCTWNPQAPKDSRRITDMYRNS 161
Query: 124 DLYSSDHSVVPVDFVDPAGYDSTDQ----QRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
++YS D VP+ T+Q + I+I K+R GQE+ A KGIGKDHAK
Sbjct: 162 NVYSKDIKWVPIGRQAELYPRGTEQLGVLENDILICKMRPGQEIHAFMHAIKGIGKDHAK 221
Query: 180 WSPAATVTFMYEPEIHI 196
+SP AT ++ P+I +
Sbjct: 222 FSPVATASYRLLPDIQL 238
>gi|401419509|ref|XP_003874244.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490479|emb|CBZ25739.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 434
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 41/303 (13%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
FE+++ ++N RRV+ EVPT+A D V IE N S + DE ++HRLGL+P+ M
Sbjct: 122 FEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGP-VMK 180
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVD-PAG 142
M + + + + + F L A D + +YS VP+ D G
Sbjct: 181 MHYITESNQASFNNLDPSRVLLFELDATGAKDAAVT----PVYSRQLQWVPLPGQDKKTG 236
Query: 143 YDSTDQQRG--------------------IIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
+ Q G I++ KL GQ ++L+AIA KG+G HAKWSP
Sbjct: 237 AVAGVCQAGSEECAGADDDDDAVFLVHPDILLTKLGPGQRIKLKAIAVKGLGAVHAKWSP 296
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ----VYVVDAEAY 238
+ + E+ + +L E L+ ++ V+S PT VF + GQ VV E
Sbjct: 297 VSACYY----EMKTSVELCERLTGSAAEALVKSCPTGVFGYE--GGQKGAAATVVAPEKC 350
Query: 239 TYDDEVIKK-----AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
T E +++ A + V + + +F +ES G + +Q++ + + ++
Sbjct: 351 TLCRECLRRDDTGPGAATNEGDRVRVQKDKTHVLFHIESVGQLHPAQILRFGLRLFAERC 410
Query: 294 DAV 296
A+
Sbjct: 411 RAL 413
>gi|313236133|emb|CBY11457.1| unnamed protein product [Oikopleura dioica]
gi|313243610|emb|CBY42293.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 142/300 (47%), Gaps = 32/300 (10%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-R 80
+F++R D SM+N LRR+MIAEVP +A D V I N++++ DE +AHRLGLIP+ ++ R
Sbjct: 66 VEFDIRGIDPSMSNTLRRIMIAEVPQMAFDRVLIFNNTTLIQDEVLAHRLGLIPIKADFR 125
Query: 81 AMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL---DVTSKDLYSSDHSVVPVDF 137
R +D + D C+ H++ D L V K +S + V V+
Sbjct: 126 QFKSRTEKDMTSID-------CTKAAHVKGAKEDDSLLFHFKVIGKHQKNSTNHVQIVES 178
Query: 138 VD----PAGYDSTDQQ-----RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
+ P G I I K++ Q + + A +GIG+DHAK+SP T +
Sbjct: 179 SELKWSPVGNQKETMNVMPCFHDITIAKIKPKQFIDIELHAFRGIGRDHAKFSPVCTAFY 238
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYV-VDAEAYTYDDEVIKK 247
P I E + ++E K + SP V I+ V V VDA + EV +
Sbjct: 239 RLLPTIEFTEPIRGDDAVEVKSMF---SPGTVEIINDEAKVVNVRVDANSR----EVFRH 291
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADD 307
+ +V++ + +F+VE+ GA+ + + +VL K D V L E T +D
Sbjct: 292 KKYR---DIVKLGRDREVALFSVETVGALSPCIIFKESCKVLMNKCD-VFLEELTRTQND 347
>gi|156368414|ref|XP_001627689.1| predicted protein [Nematostella vectensis]
gi|156214606|gb|EDO35589.1| predicted protein [Nematostella vectensis]
Length = 342
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 148/304 (48%), Gaps = 44/304 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I L +F++ DAS+ANA RR+++AEVPT+AI+ V + N+S++ DE +AHR
Sbjct: 47 KINITRLTPSDMEFDMIGIDASVANAFRRILLAEVPTMAIEKVFLYNNTSIIQDEVLAHR 106
Query: 71 LGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL--DVTSKD-LY 126
LGLIP+ ++ R + + D +A D ++ F L+ KC ++ D T D LY
Sbjct: 107 LGLIPIHADPRLFNYKKQGDEEAQDD------TTLVFELKVKCIKNKNAPKDATDPDELY 160
Query: 127 -----SSDH-SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
++DH +P + D + +V QEL ++ A KG+GKDHAK+
Sbjct: 161 INSKVTTDHLKWIPTP-QQAQKFGPQDIRPLSNVVFFFTLQELDIKMHAVKGVGKDHAKF 219
Query: 181 SPAATVTFMYE--PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAY 238
SP T Y PEI + + + L+ + + P +V V+ + +
Sbjct: 220 SPVGKSTASYRLLPEITLLKPCEDELADKLAACF-----------SPGVIKVKTVNEKNH 268
Query: 239 TYDDEVIKKAEAMGKPGLVEIYAKE----DSFI------FTVESTGAIKASQLVLNAIEV 288
T D V ++ ++ +Y E + F+ +VES GA++ LV AI+V
Sbjct: 269 TNDQNVGLRSLC----NIISVYISENIIRNEFVEKNYTNVSVESIGALRPEVLVCEAIKV 324
Query: 289 LKQK 292
L K
Sbjct: 325 LISK 328
>gi|339238573|ref|XP_003380841.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
gi|316976212|gb|EFV59540.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
Length = 277
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 14/202 (6%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D Y + KVK+ + D + + + DA NA+RR+++AEVPT+AI+ V + N+ V
Sbjct: 27 DVEKYAKHMKVKVMNIIDMEMQLDFVNVDAPFVNAIRRILLAEVPTMAIEKVHMFQNTGV 86
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE AHRLGL+P+ ++ R R + A D ++ F L+ K + D+ +
Sbjct: 87 IADEVFAHRLGLLPIKADPRQFQYRTDDEPKAED--------TLIFELKVKSNVDE---I 135
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKLRRGQELRLRAIARKGIGKDHA 178
++ + SS P+D + + + I++ L+ GQE+ KGIG+DHA
Sbjct: 136 ENERVCSSALEWKPIDGQEEKFKNCPPKVVHPDILLAILKSGQEIECVCHCTKGIGRDHA 195
Query: 179 KWSPAATVTFMYEPEIHINEDL 200
K+SP AT ++ + PE+ D
Sbjct: 196 KFSPVATASYRFLPELKFLRDF 217
>gi|194761112|ref|XP_001962776.1| GF19666 [Drosophila ananassae]
gi|190616473|gb|EDV31997.1| GF19666 [Drosophila ananassae]
Length = 125
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 58/74 (78%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSE 79
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
>gi|340058077|emb|CCC52431.1| putative DNA-directed RNA polymerase, alpha subunit [Trypanosoma
vivax Y486]
Length = 389
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 131/279 (46%), Gaps = 24/279 (8%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F++ +AN RR+M+ EVP +A D + IE N S++ DE +AHR+GL+P+
Sbjct: 102 FDMDHVSPPIANMFRRLMLTEVPVLAFDRILIEENDSIMPDELLAHRIGLVPVAGP-VSR 160
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
+ + D D + F L + V + +YS D P+ +P G
Sbjct: 161 IHYVTDSQQISFDALDPTRVLLFELDVEGRR----GVQATSVYSGDLKWRPLPSQEPWGT 216
Query: 144 DSTDQQ-----RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 198
+D + I++ +L GQ L+LRAIA KGIG HAKW+P + +
Sbjct: 217 GQSDDRVFLVHPDIVLTRLGPGQRLKLRAIALKGIGAVHAKWAPVSACYY---------- 266
Query: 199 DLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPG--L 256
++M + ++ + +S K D + + + + ++ ++ KPG L
Sbjct: 267 EMMTEVDPVDETACDQSKKLKSLDAAGASTSHHGIQERPDSDGCMPSQRPQSHEKPGDVL 326
Query: 257 VEIYAKEDS--FIFTVESTGAIKASQLVLNAIEVLKQKL 293
E+ ++D FTVES G + A+Q+ +A+++ +++
Sbjct: 327 GEVLVRKDKTRVRFTVESVGQLHAAQVFRSALQLFSERV 365
>gi|25012925|gb|AAN71549.1| RH25219p [Drosophila melanogaster]
Length = 117
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 58/74 (78%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL DD KF L DT+ S+AN+LRRV IAE PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 66 FIAHRLGLIPLTSE 79
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
>gi|149032427|gb|EDL87318.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_c
[Rattus norvegicus]
Length = 92
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
Y P V+I EL ++ KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 66 FIAHRLGLIPLTSERAM-SMRFSR 88
FIAHRLGLIPLTS+ + +++SR
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSR 86
>gi|398014106|ref|XP_003860244.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
gi|322498464|emb|CBZ33537.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
Length = 442
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 141/317 (44%), Gaps = 61/317 (19%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
FE+++ ++N RRV+ EVPT+A D V IE N S + DE ++HRLGL+P+ M
Sbjct: 122 FEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGP-VMK 180
Query: 84 MRFSRDCDACDGDGQCEFCSVE------FHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF 137
M + + + Q F +++ F L A D + +YS VP+
Sbjct: 181 MHYITESN------QASFSNLDPSRVLLFELDATGAKDAAVT----PVYSRQLQWVPLPG 230
Query: 138 VDP-----AGYDSTDQQR------------------------GIIIVKLRRGQELRLRAI 168
D AG T ++ I++ KL GQ ++L+AI
Sbjct: 231 QDKKTGAVAGACQTGREEYAGAAGATEHSADDDDDAVFLVHPDILLSKLGPGQRIKLKAI 290
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
A KG+G HAKWSP + + E+ + +L E L+ ++ V+S P VF + G
Sbjct: 291 AVKGLGAVHAKWSPVSACYY----EMKTSVELCERLTGSAAEALVKSCPAGVFGYE--GG 344
Query: 229 Q----VYVVDAEAYTYDDEVI----KKAEAMGKPG-LVEIYAKEDSFIFTVESTGAIKAS 279
Q VV E T E + K AEA G V + ++ +F +ES G + +
Sbjct: 345 QKGAAATVVAPEKCTLCRECLRSDGKGAEAAASEGDRVRVQKEKTHVLFHIESVGQLHPA 404
Query: 280 QLVLNAIEVLKQKLDAV 296
Q++ + + ++ A+
Sbjct: 405 QILRFGLRLFAERCRAL 421
>gi|146084517|ref|XP_001465028.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
gi|134069124|emb|CAM67271.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
Length = 442
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 141/317 (44%), Gaps = 61/317 (19%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
FE+++ ++N RRV+ EVPT+A D V IE N S + DE ++HRLGL+P+ M
Sbjct: 122 FEMQNVSPPISNLFRRVLTTEVPTLAFDRVLIEENDSPVLDELLSHRLGLVPVAGP-VMK 180
Query: 84 MRFSRDCDACDGDGQCEFCSVE------FHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDF 137
M + + + Q F +++ F L A D + +YS VP+
Sbjct: 181 MHYITESN------QASFSNLDPSRVLLFELDATGAKDAAVT----PVYSRQLQWVPLPG 230
Query: 138 VDP-----AGYDSTDQQR------------------------GIIIVKLRRGQELRLRAI 168
D AG T ++ I++ KL GQ ++L+AI
Sbjct: 231 QDKKTGAVAGACQTGREEYAGAAGATEHSADDDDDAVFLVHPDILLSKLGPGQRIKLKAI 290
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTG 228
A KG+G HAKWSP + + E+ + +L E L+ ++ V+S P VF + G
Sbjct: 291 AVKGLGAVHAKWSPVSACYY----EMKTSVELCERLTGSAAEALVKSCPAGVFGYE--GG 344
Query: 229 Q----VYVVDAEAYTYDDEVI----KKAEAMGKPG-LVEIYAKEDSFIFTVESTGAIKAS 279
Q VV E T E + K AEA G V + ++ +F +ES G + +
Sbjct: 345 QKGAAATVVAPEKCTLCRECLRSDDKGAEAAASEGDRVRVQKEKTHVLFHIESVGQLHPA 404
Query: 280 QLVLNAIEVLKQKLDAV 296
Q++ + + ++ A+
Sbjct: 405 QILRFGLRLFAERCRAL 421
>gi|407464315|ref|YP_006775197.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
gi|407047503|gb|AFS82255.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
Length = 212
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 93/162 (57%), Gaps = 21/162 (12%)
Query: 34 ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSR--DCD 91
ANALRRV + VP AID V+I NSSVL DE +AHRLGLIPLT++ + RF+ C+
Sbjct: 26 ANALRRVCLNGVPVFAIDTVDIIENSSVLPDEGLAHRLGLIPLTTDLS---RFNEPSKCE 82
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
C + C C V L + SD T V S +L S D S+ P ++D+
Sbjct: 83 -CQSETGCSNCRVMLVLDSG-DSDVTRTVLSNELSSEDDSIKP----------TSDK--- 127
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPE 193
I IV+L GQ +++ AR G G +HAKW+ +AT++ + + E
Sbjct: 128 IPIVQLAPGQRIKIECYARLGRGTEHAKWN-SATISTLTDTE 168
>gi|347523607|ref|YP_004781177.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
gi|343460489|gb|AEM38925.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
Length = 293
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 80/170 (47%), Gaps = 24/170 (14%)
Query: 32 SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSM-----RF 86
+ NALRR VP +AID VE N++VL DE +AHRLGLIPL S A+ F
Sbjct: 19 AFVNALRRAAYTMVPVMAIDYVEFIDNNTVLYDEILAHRLGLIPLDSREAIKSYKKPEEF 78
Query: 87 SRDCDACDGDGQCEF----CSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAG 142
C D G +F C L + D+ V S DL SSD +V PV
Sbjct: 79 QESC--IDSSGVPKFDEPGCFATLTLEVETGVDEVRMVYSGDLQSSDPTVKPV------- 129
Query: 143 YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 192
I IV + GQ L +RA AR G GK+HAKW P + Y P
Sbjct: 130 ------YPNIPIVLMAPGQRLHVRAYARLGYGKEHAKWFPVSVAAHRYLP 173
>gi|160331409|ref|XP_001712412.1| rpa5 [Hemiselmis andersenii]
gi|159765860|gb|ABW98087.1| rpa5 [Hemiselmis andersenii]
Length = 335
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 130/286 (45%), Gaps = 30/286 (10%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+++ D S +NALRR++++E+ I+ V NSS+LNDE IAHRLG+IPL +S
Sbjct: 60 FQIKGFDFSFSNALRRILLSEISIFGIEKVFFYDNSSILNDEIIAHRLGMIPL----FVS 115
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD--QTLDVTSKDLYSSDHSVVPVDF---- 137
F D F + +LRA ++ + + + SK L + V+ F
Sbjct: 116 PHF---IDYSVKKKTQNFLKIILNLRANHPNNFFKNISIYSKSLKWKKYGVLKSFFKNVP 172
Query: 138 VDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 197
V P D I+I KL GQ++ + GIG +HAK+SP + + P+I I
Sbjct: 173 VKPVFKD-------ILIAKLNPGQKIECECESLIGIGNNHAKFSPVGSTFYKIFPKIKII 225
Query: 198 EDLMESLSLEEKQSWVESSPTKVFDIDP----NTGQVYVVDAEAYTYDDEVIKKAEAMGK 253
++ +E V+ P KVFD++ + +++V T E I + +
Sbjct: 226 SEIFG----KEAVFLVQKCPMKVFDLEEFSLFSLKRLFVSSPNYCTMCKECIDFPKYVVP 281
Query: 254 PGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
+ I F +E+TG L AI +L K + LS
Sbjct: 282 K--IRIGRNNQKITFIIETTGIFSPEILFHRAIFLLVGKCNQSLLS 325
>gi|452207493|ref|YP_007487615.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
gi|452083593|emb|CCQ36905.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
Length = 247
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 124/273 (45%), Gaps = 50/273 (18%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F +R + AN +RR M+A+VPT+++D V + NSSV+ DE IA RLGLIPLT+
Sbjct: 17 ARFLVRGISPAFANGIRRAMVADVPTLSVDTVRVIENSSVMFDEQIALRLGLIPLTT--- 73
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
D E ++ + + S DL SSD V P
Sbjct: 74 -----------PDDYEPEETVTLAIDVEGPATA------YSGDLVSSDGQVQPA------ 110
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ + I+ L+ GQ L L A A G GKDHAK V + + + + +D
Sbjct: 111 -------EENVPIIDLKEGQRLELEADAELGYGKDHAKHQGGVAVGYRHLQRVALGDD-- 161
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYA 261
+ + E P + + + G++ E ++D+++ + V +
Sbjct: 162 -------RDEFAEDDPEIIRGVIEDDGEL----VETASFDNDLSDRYPDRE----VSVED 206
Query: 262 KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
++F+F VE+ G++ +LVL A+E L+ + D
Sbjct: 207 VPNAFVFDVETDGSMTVDELVLKAVESLRTRAD 239
>gi|407461953|ref|YP_006773270.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
gi|407045575|gb|AFS80328.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
Length = 221
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 21/170 (12%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
+L+ ANALRRV + VP AID V+I N+SVL DE +AHRLGLIPL ++ +
Sbjct: 25 LKLKGVPLQYANALRRVCLNGVPVFAIDTVDIIENTSVLPDEGLAHRLGLIPLKTDLS-- 82
Query: 84 MRFSR--DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
RF+ C+ C + C C V L + SD T V S ++ S D S+ P+
Sbjct: 83 -RFNEPSKCE-CQSEAGCSNCKVMLVLDSG-DSDVTRTVLSNEISSEDDSITPI------ 133
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
+D+ I IV+L GQ++++ AR G G +HAKW+ +A ++ + E
Sbjct: 134 ----SDK---IPIVELAPGQKIKIECYARLGRGTEHAKWN-SANISMLTE 175
>gi|161527936|ref|YP_001581762.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
gi|160339237|gb|ABX12324.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
Length = 221
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 93/170 (54%), Gaps = 21/170 (12%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
+L+ ANALRRV + VP A+D V+I NSSVL DE +AHRLGLIPL ++ +
Sbjct: 25 LKLKGVPLQYANALRRVCLNGVPVFAVDTVDIIENSSVLPDEGLAHRLGLIPLKTDLS-- 82
Query: 84 MRFSR--DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
RF+ C+ C + C C V L + SD T V S +L S D S+ P+
Sbjct: 83 -RFNEPSKCE-CQSETGCSNCKVMLVLDSG-DSDVTRTVLSNELSSEDDSITPI------ 133
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
+D+ I IV+L GQ +++ AR G G +HAKW+ +A V+ + E
Sbjct: 134 ----SDK---IPIVELAPGQRIKVECYARLGRGTEHAKWN-SANVSMLTE 175
>gi|307206448|gb|EFN84486.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Harpegnathos
saltator]
Length = 390
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 23/208 (11%)
Query: 6 YQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
+Q+ ++++ + KD+ +F++ +++ NA RR++++EVP++AI+ V + N+SV+ DE
Sbjct: 50 FQKTMRIEVVQDKDNVLEFDMIGCSSALVNAFRRILLSEVPSMAIEKVYVINNTSVVQDE 109
Query: 66 FIAHRLGLIPLTSERAM----SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
+AHRLGLIPL ++ + +D + D D ++ + L+ C +
Sbjct: 110 VLAHRLGLIPLRADPRLFEYPPSNGRKDDEVSDQD------TLRYELKVACTKNPQKSQD 163
Query: 122 SK---------DLYSSDHSVVPVDFVDPAGYDSTDQ----QRGIIIVKLRRGQELRLRAI 168
S+ +YS D VP+ + +Q + I+I K+R G E+ +
Sbjct: 164 SQLPEEIYKNSSVYSKDIKWVPIGRQAEMFPNGAEQLGVLENDILISKMRPGHEIHVYMH 223
Query: 169 ARKGIGKDHAKWSPAATVTFMYEPEIHI 196
A KGI KDHAK+SP + T+ P I +
Sbjct: 224 AFKGISKDHAKYSPLSIATYRLLPNIEL 251
>gi|374327628|ref|YP_005085828.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
gi|356642897|gb|AET33576.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
Length = 260
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 135/286 (47%), Gaps = 44/286 (15%)
Query: 9 FPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
P+ ++ E + K + ++ N+LRRV+I+E+P +AID V + N+SV+ DE +A
Sbjct: 1 MPQARVVEKSGLFLKAVVEGVPPTLINSLRRVIISELPVMAIDSVVVVNNTSVMYDEMLA 60
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
HRLGLIPLT+ + ++ DC G CS L+ +D L V S DL S
Sbjct: 61 HRLGLIPLTTPLS-ALPPIEDC--VSGLADPSECSARLTLQVT--ADGDLTVYSGDLVSE 115
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
V PV + I IVKL +GQ + L A A+ G+ +DHAKW AA ++
Sbjct: 116 RPDVAPV-------------YKDIPIVKLVKGQSIVLEAYAKLGVARDHAKWQ-AALASY 161
Query: 189 MYEPEIHI-NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
Y P + + NE+ E E + +E F+ +A+T +
Sbjct: 162 YYYPRVEVRNEECRE--RCREICAKLEDPIECTFN-------------KAWTCKN----- 201
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
+ K GL E+ + + ++F +ES G + A +LK+K
Sbjct: 202 ---LCKDGL-EVTWERNKYVFWIESYGNYDVETALREAFRILKKKF 243
>gi|386876610|ref|ZP_10118709.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386805572|gb|EIJ65092.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 221
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 92/174 (52%), Gaps = 21/174 (12%)
Query: 18 KDDYA-KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL 76
KD++ +L+ ANALRRV + VP AID V+I NSSVL DE +AHRLGLIPL
Sbjct: 18 KDNHKISIKLKGVPLQYANALRRVCLNGVPVFAIDTVDIVENSSVLPDEGLAHRLGLIPL 77
Query: 77 TSERAMSMRFSR--DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVP 134
++ A RF+ C+ C + C C V L + SD T + S +L S D +V P
Sbjct: 78 KTDLA---RFNEPSKCE-CQSETGCSNCKVMLVLDSG-DSDVTRTILSNELSSEDDTVKP 132
Query: 135 VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
V +D+ I IV+L GQ +++ AR G G +HAKW+ T
Sbjct: 133 V----------SDK---IPIVQLAPGQRIKVECYARLGRGTEHAKWNATNIATL 173
>gi|430813139|emb|CCJ29483.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 578
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 128/280 (45%), Gaps = 40/280 (14%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F+L D S+ NA RR++IAE+PTIAI+ V + N+S++ DE +A RLGLIP+ +
Sbjct: 2 EFDLIGIDCSIVNAFRRILIAEIPTIAIEYVFVNNNTSIIQDEILAQRLGLIPIKANPDF 61
Query: 83 SMRFS-------------RDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD----- 124
F+ ++ DA ++ +V L+ C + +D
Sbjct: 62 FTWFTSNYFPIFFFILNIKEPDANQEPRPTDYDTVVLSLKVACTKNPKASENERDPEKLY 121
Query: 125 ----LYSSDHSVVPVD-----FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGK 175
+YS D P F D D+ I+I KLR GQE+ + GIG+
Sbjct: 122 INSNVYSGDIQWQPAGRQIELFKDDPIKAVHDK---ILIAKLRPGQEIDVTMHCILGIGQ 178
Query: 176 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDI---DPNTGQVYV 232
DHAK+SP +T ++ P IHI +E + ++ + + V DI + N V
Sbjct: 179 DHAKFSPVSTSSYRLLPTIHI----LEPIYDDDAEKFALCFSKGVIDIVLDEQNRKVAKV 234
Query: 233 VDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVES 272
+ T E ++ E K V++ D FIF++E+
Sbjct: 235 ANPRNDTVSRECLRHDEFKDK---VKLGRVRDHFIFSIEN 271
>gi|329766306|ref|ZP_08257853.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137208|gb|EGG41497.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 212
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 93/170 (54%), Gaps = 21/170 (12%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
+L+ ANALRR+ + +P AID V+I NSSVL DE +AHRLGLIPL ++ +
Sbjct: 16 IKLKGVPLQYANALRRICLNGIPVFAIDTVDIIENSSVLPDEGLAHRLGLIPLQTDLS-- 73
Query: 84 MRFSR--DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
RF+ CD C + C C V L + SD T + S +L S D SV P
Sbjct: 74 -RFNEPSKCD-CKSETGCSNCKVMLVLDSG-DSDVTRTILSNELTSEDESVKP------- 123
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
++D+ I IV+L GQ +++ AR G G +HAKW+ ++ ++ + E
Sbjct: 124 ---TSDK---IPIVQLAAGQRIKVECYARLGRGTEHAKWN-SSNISVLTE 166
>gi|393796020|ref|ZP_10379384.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia BG20]
Length = 212
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 93/170 (54%), Gaps = 21/170 (12%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
+L+ ANALRR+ + +P AID V+I NSSVL DE +AHRLGLIPL ++ +
Sbjct: 16 IKLKGVPLQYANALRRICLNGIPVFAIDTVDIIENSSVLPDEGLAHRLGLIPLQTDLS-- 73
Query: 84 MRFSR--DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
RF+ CD C + C C V L + SD T + S +L S D SV P
Sbjct: 74 -RFNEPSKCD-CKSETGCSNCKVMLVLDSG-DSDVTRTILSNELTSEDESVKP------- 123
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
++D+ I IV+L GQ +++ AR G G +HAKW+ ++ ++ + E
Sbjct: 124 ---TSDK---IPIVQLAAGQRIKVECYARLGRGTEHAKWN-SSNISVLTE 166
>gi|118431575|ref|NP_148137.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
gi|150421654|sp|Q9YB53.2|RPOD_AERPE RecName: Full=DNA-directed RNA polymerase subunit D
gi|116062900|dbj|BAA80745.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
Length = 286
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 33/289 (11%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V++ EL + +R NA+RR ++++VPT+A+D I N++ + DE +AHRL
Sbjct: 9 VEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHRL 68
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD--VTSKDLYSSD 129
GL+ L S A+ ++ R + + E C VE L A+ ++ +T+ DL SD
Sbjct: 69 GLVVLDSNEAVE-KYRRPEECAGKEPSEEDCFVEVSLEAEVDAEGETGRYITAGDLSISD 127
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V PV Y T ++ + GQ + ++A AR G GK+H KWSPA+
Sbjct: 128 PQVKPV-------YPETP------LIYVAPGQRIHVQAFARLGRGKEHTKWSPASLSVLR 174
Query: 190 YEPEI-----HINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
Y P + ++ +E LS + P V + V++ T
Sbjct: 175 YTPILIYDSSKAGDECLECLS---------AYPQVVEALKSGGKGSLVLEGLRRTSG--- 222
Query: 245 IKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
++ G VE+ + VESTGA++ ++V AI L++K+
Sbjct: 223 LRYCAETACRGAVEVRYDSSNLDLEVESTGALRPEKIVELAIRELEEKV 271
>gi|322369534|ref|ZP_08044099.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
gi|320551266|gb|EFW92915.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
Length = 248
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 125/279 (44%), Gaps = 61/279 (21%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--- 78
A+F +R+ + AN +RR MIA+VPT++ID + + NSSV+ DE I RLGL+PLT+
Sbjct: 17 ARFLVRNVTPAFANGIRRAMIADVPTLSIDTLRVIENSSVMFDEQIGLRLGLVPLTTPPG 76
Query: 79 --ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVD 136
E ++ S D G G S DL SSD V P D
Sbjct: 77 EFEEGDTVTLSLD---VSGPGTA---------------------FSGDLISSDEMVQPAD 112
Query: 137 FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
I I+ L+ GQ L L A A G GKDHAK V + + + +
Sbjct: 113 -------------DNIPIIDLKEGQRLELEADAVLGSGKDHAKHQGGVAVGYRHLQRVEV 159
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL 256
D + + E P + + G++ + T+D ++ ++ PG
Sbjct: 160 VGD---------RDEFGEEEPRILRGTIEDDGELVPTE----TFDHDLSQRF-----PGK 201
Query: 257 -VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
VE++ ++F+F VES G+ +LV A++ L ++ D
Sbjct: 202 EVEVHDVPNAFVFDVESDGSFTVEELVTQAVDSLTERAD 240
>gi|257388632|ref|YP_003178405.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
gi|257170939|gb|ACV48698.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
Length = 259
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 135/291 (46%), Gaps = 46/291 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E D A+F +R + AN +RR MIA+VPT ++D V + NSSV+ DE I R
Sbjct: 6 EVEFVERSDREARFLVRGISPAFANGIRRAMIADVPTFSVDTVRVIENSSVMFDEQIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACD-GDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
LGL+PLT+ D D + GD E L +T S DL SSD
Sbjct: 66 LGLVPLTT----------DLDDFEVGD--------EVTLSIDVSGPET--AYSGDLVSSD 105
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V P D I I+ L+ GQ L + A A G++HAK V +
Sbjct: 106 SLVGPAD-------------DNIPIIDLKDGQRLEVEADAVLDRGREHAKHQGGVAVGYR 152
Query: 190 YEPEIHINEDLMESLSLEEK--QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
+ + + D E E + +E + D D + G + + + +D ++ K+
Sbjct: 153 HLQRVEVVGDKGEFEDDETHILRGVIEEQAAEHVDGDADDGDLVLTE----EFDSDLTKR 208
Query: 248 AEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
PG +E++ E++F+F VE+ G++ +L L A++ ++ + D +R
Sbjct: 209 -----YPGKELEVHDVENAFVFHVETDGSLSVEELTLRAVDSIRSRADELR 254
>gi|76802059|ref|YP_327067.1| DNA-directed RNA polymerase subunit D [Natronomonas pharaonis DSM
2160]
gi|121723150|sp|Q3IQT6.1|RPOD_NATPD RecName: Full=DNA-directed RNA polymerase subunit D
gi|76557924|emb|CAI49508.1| DNA-directed RNA polymerase subunit D [Natronomonas pharaonis DSM
2160]
Length = 247
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 127/274 (46%), Gaps = 52/274 (18%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F +R + AN LRR MIA+VPT++ID + + NSSV+ DE +A RLGL+PLT+
Sbjct: 17 ARFLVRGVTPAFANGLRRAMIADVPTLSIDTLRVVENSSVMFDEQLALRLGLVPLTT--- 73
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
D + G+ +++ A + S DL SSD V P D
Sbjct: 74 -----PDDYEP----GETVTLAIDVEGPATAY--------SGDLVSSDDKVQPAD----- 111
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
I I++L+ Q+L L A A G GKDHAK V + + + +
Sbjct: 112 --------ENIPIIELKDDQQLELEADATLGRGKDHAKHQGGVAVGYRHLQRVEV----- 158
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL-VEIY 260
+ EK + + P + + G + E +D+++ ++ PG VE+
Sbjct: 159 ----VGEKGEFEDDEPEILRGVIEEDGDLI----ETGEFDNDLSQR-----YPGKEVEVE 205
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
++F+F VE+ G++ +LVL A E + + D
Sbjct: 206 EVPNAFVFDVETDGSMPVEELVLKAAESIAARAD 239
>gi|343469407|emb|CCD17607.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 141
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 13/133 (9%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F+L + D S AN LRRV++AEVP +A+ V I N+SVL DE IAHR+GL+PL S +A
Sbjct: 21 FQLDEVDNSFANGLRRVLLAEVPVLAVVSVTIVQNTSVLPDEMIAHRIGLVPLYSMKARE 80
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVTSKDLYSSDHSVVPVDFVDPAG 142
M+ + DC C G G C C + ++ +C SD+ +L V + L D V PV
Sbjct: 81 MQLAGDC-LCGGLG-CIKCQITGEMKVRCPSDRHSLQVFTDSLKIDDEQVYPV------- 131
Query: 143 YDSTDQQRGIIIV 155
+ ++RG+ +V
Sbjct: 132 ---SSKERGVWLV 141
>gi|307594234|ref|YP_003900551.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
gi|307549435|gb|ADN49500.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
Length = 302
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 134/285 (47%), Gaps = 36/285 (12%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
VK+ E + Y K + + N+LRRV+I++VP +AID V I N+SVL DE +AHRL
Sbjct: 4 VKVIEKSNLYLKAVVDGVTPPVINSLRRVLISDVPVLAIDEVIILDNTSVLYDEVLAHRL 63
Query: 72 GLIPLTSERAMSMRFSRDCDACDGD-GQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
++P+ ++ +R + C+ + C V F L + + + V S+DL S D
Sbjct: 64 SMMPIKTD----LRKLPKIEECEQELVDPSLCQVRFELNV--EAKEPMIVYSRDLKSDDP 117
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V PV Y+ I IVKL GQ++ L A A+ G ++HAKW A ++ Y
Sbjct: 118 EVRPV-------YED------IPIVKLVPGQKIVLEAYAKLGRARNHAKWQ-AGLASYYY 163
Query: 191 EPEIHI--NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
P++ + D + LE +E G + + D T++ K
Sbjct: 164 YPKVSVVGKADDKCRVCLEVCNGALEIK---------EDGSIIINDVLKCTFNK--WKTC 212
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
E + P L ++ E+ ++F VES G + +V +LK K
Sbjct: 213 EQLC-PAL-KVDWDENKYVFWVESFGNMPVEDMVREGFRILKGKF 255
>gi|126460700|ref|YP_001056978.1| DNA-directed RNA polymerase subunit D [Pyrobaculum calidifontis JCM
11548]
gi|166229320|sp|A3MXZ5.1|RPOD_PYRCJ RecName: Full=DNA-directed RNA polymerase subunit D
gi|126250421|gb|ABO09512.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum calidifontis
JCM 11548]
Length = 258
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 132/286 (46%), Gaps = 42/286 (14%)
Query: 9 FPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
PKV I E +AK + S+ N+LRRV+I+E+P +AID V + N+SV+ DE +A
Sbjct: 1 MPKVSIVEKSQFFAKAVVEGVPPSLINSLRRVIISELPVLAIDSVVVVNNTSVMYDEMLA 60
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
HRLGLIPLT+ + DC++ G C+V L+ D V + DL +
Sbjct: 61 HRLGLIPLTTP-LKDLPPIEDCES--GLVDPSECTVRLTLQVNATGDVV--VYAGDLVAD 115
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
V PV + I IVKL GQ + + A A+ G +DHAKW AA ++
Sbjct: 116 RPDVAPV-------------YKDIPIVKLVEGQSVVVEAYAKLGRARDHAKWQ-AALASY 161
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
Y P++ + + + E ++ +P + T++ K
Sbjct: 162 YYYPKVVVKREECREMCKEVCRNL--ENPLEC------------------TFNKATTCKE 201
Query: 249 EAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
G G+V + K D ++F +ES G A + A +LK+K +
Sbjct: 202 MCGG--GIVVEWEK-DKYVFWIESFGNYDAETALREAFRILKKKFE 244
>gi|448414206|ref|ZP_21577345.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
gi|445682499|gb|ELZ34916.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
Length = 260
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 133/289 (46%), Gaps = 51/289 (17%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E D A+F +R ++AN +RR MIA+VPT ++D V NSSV+ DE I R
Sbjct: 6 EVEFIERDDRKARFLVRGMTPAVANGIRRAMIADVPTFSVDTVRFVENSSVMFDEMIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT++ D +GD VE A S D+ +SD
Sbjct: 66 LGLVPLTTDLG---------DFEEGDVVTLALDVEGPATA----------YSGDIETSDG 106
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V P D + + I++L+ GQ L L A A G GK+HAK V + +
Sbjct: 107 LVQPAD-------------QNVPIIELKEGQRLELEADAVLGRGKEHAKHQGGVAVGYRH 153
Query: 191 EPEIHINEDLMESLSLEEKQSWV------ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
+H E + ++ +E++ + E + D G + +A +D+++
Sbjct: 154 ---LHRVEVVGDANEFDEQEPNILRGVIEEQAAEHAADEGAQNGDLVPTEA----FDNDL 206
Query: 245 IKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
K+ PG VE++ +F+F VE+ G+ +LV A+E + +
Sbjct: 207 AKR-----YPGKEVEVHDVPGAFVFHVETDGSFTVEELVRRAVESISDR 250
>gi|448303016|ref|ZP_21492966.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594023|gb|ELY48190.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
Length = 249
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 136/297 (45%), Gaps = 64/297 (21%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D YA+F +R + AN LRR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEHEDRYARFLVRGVTPAFANGLRRAMLADVPTLAIDTVRFIENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ +A +G S++ A + S DL SSD
Sbjct: 67 GLVPLTTP----------PEAEFAEGDTVTLSIDVEGPATAY--------SGDLVSSDDL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I+ L+ Q L A A GK+HAK A + + +
Sbjct: 109 VQPAD-------------ENVPIIDLKDDQRLEAEADAVFNRGKNHAKHQGAVSAGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE-- 249
+ + +DL E EE++S + V++A D E+I+ +E
Sbjct: 156 QRVEVVDDLPE---FEEQESRIIRG---------------VIEA-----DGELIQTSEFD 192
Query: 250 ---AMGKPG-LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
+ PG VEI ++F+F +E+ G+ +LV A + ++ + DAV+L
Sbjct: 193 HDLSNRYPGKQVEIEDVPNAFVFNIETDGSFPVDELVTRAADSIEARAAELEDAVQL 249
>gi|429965270|gb|ELA47267.1| hypothetical protein VCUG_01263 [Vavraia culicis 'floridensis']
Length = 217
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 23/176 (13%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K+ I E F + + S NA+RR +++EVPTIAIDLV + N++ + +E + HR
Sbjct: 20 KMVILETTPTTINFTITPSTNSFLNAIRRTLLSEVPTIAIDLVTVHKNTTCIPNEMLVHR 79
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
L LIPL + + + C + C CSV F L A S++ + V + L+S
Sbjct: 80 LSLIPL------PITPLKRKEECTCNVSCPECSVTFSLNAV--SNEGMTVNASHLFS--- 128
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
D VD T + +G +I K+ Q +++ A+AR G+ K+HAK+ V
Sbjct: 129 -----DAVD------TTRLKG-LICKMGEKQSVKMTALARTGVAKEHAKFCVVTVV 172
>gi|429962182|gb|ELA41726.1| hypothetical protein VICG_01230 [Vittaforma corneae ATCC 50505]
Length = 298
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 54/282 (19%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F++ + S+AN LRR++I++VPT+AI V + N++V DE+IAHRLGLIPL A
Sbjct: 40 EFDILNCHPSIANTLRRILISKVPTMAIHYVSVYENNTVFPDEYIAHRLGLIPL---EAN 96
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAG 142
FS D + F D+T D +L S D ++FV G
Sbjct: 97 PEYFSYFKDEETFENVLNF-----------RIDKTADKEPVNLMSDD-----IEFVPAEG 140
Query: 143 YD--STDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
D S + +++ K+ G ++ + A KG G+ HAKWSP + ++ P+I + +D
Sbjct: 141 QDHFSFRFKPNVLVCKMVPGNQVEMTFKAIKGRGEQHAKWSPVSLCSYRIMPKIILEKDF 200
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL---- 256
+ E + + SP G + +++ +A + + E+M + L
Sbjct: 201 YGEDAKELQACF---SP----------GVIEIINNKAVVAN----PRLESMSREALRHEK 243
Query: 257 ----VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
V+I + F F VE+ + L+ I+VLK L+
Sbjct: 244 FKDSVKILRESGWFCFNVET--------ITLDPIQVLKMGLE 277
>gi|33086616|gb|AAP92620.1| Ac2-127 [Rattus norvegicus]
Length = 260
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 130/274 (47%), Gaps = 29/274 (10%)
Query: 48 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEF 106
+A++ V + N+S++ DE +AHRLGLIP+ ++ R R + + + D +++F
Sbjct: 1 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNPGEEEGTEID------TLQF 54
Query: 107 HLRAKCHSDQTLDVTSKD---------LYSSDHSVVPVDF---VDPAGYDSTDQQRGIII 154
L+ +C + + S D +Y+ + VP+ V P G I+I
Sbjct: 55 RLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEG-TVRPVHDDILI 113
Query: 155 VKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVE 214
+LR GQE+ L KGIGKDHAK+SP AT ++ P+I L+E + E + +
Sbjct: 114 AQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSQ 169
Query: 215 SSPTKVFDIDPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVES 272
V + G+ V +A T+ E+ + E + K V + D +IF+VES
Sbjct: 170 CFSPGVIAVQEVQGKKVARVANARLDTFSREIFRH-EKLKK--AVRLARVRDHYIFSVES 226
Query: 273 TGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEAD 306
TG + LV AI++L K D VE D
Sbjct: 227 TGVLPPDVLVSEAIKILMGKCRRFLDELDAVEMD 260
>gi|448314284|ref|ZP_21503984.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
gi|445595544|gb|ELY49650.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
Length = 249
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 129/292 (44%), Gaps = 54/292 (18%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D A+F +R AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVERGDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ G+ + S++ A + S DL SSD
Sbjct: 67 GLVPLTTPPEGEF----------GEDETVTLSIDVEGPATAY--------SGDLVSSDEL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I++L+ GQ L A A GKDHAK V + +
Sbjct: 109 VQPAD-------------ENVPIIELKDGQRLEAEADAVVDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
+ + +DL E + ES P V + + G + +D ++ +
Sbjct: 156 QRVEVVDDLPE---------FEESEPQIVRGVIEDDGDL----VPTSEFDHDLTNR---- 198
Query: 252 GKPG-LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
PG VE+ ++F+F VE+ G+ +LV A + ++ + DAV+L
Sbjct: 199 -YPGKQVELEDVPNAFVFHVETDGSFSVEELVARAADSIESRAIELEDAVQL 249
>gi|387595515|gb|EIJ93139.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 297
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 133/284 (46%), Gaps = 40/284 (14%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
+ + D S+ NA+RR +I++VPT+AI V I N +V+ DE ++HRLGLIP+ ++ +
Sbjct: 48 YRINHIDPSVLNAMRRTIISDVPTVAIHWVYIRENETVMADEILSHRLGLIPIIAD---A 104
Query: 84 MRFSRDCDACDGDGQCEFC---SVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDP 140
F R + D E S++ L ++D+ L V S D+ + +
Sbjct: 105 EDFERVVKTPELDPFTELTDKNSIQMELVITNNTDKILTVRSNDIKILSKTNAAI----- 159
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
++ +II +L G+++ R A G G++H+KW P + + ++ + +
Sbjct: 160 --------KQNVIITRLVPGKKIECRLFAIIGTGREHSKWMPTSVCYYRTIKKLEMKD-- 209
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV-DAEAYTYDDEVIKKAEAMGK-PGLVE 258
P+K +I + V + +A +D+++ + K P ++
Sbjct: 210 ----------------PSKAAEIQKYFRDGFSVRNGQAIVDEDKLLVNMDIEKKYPNEIK 253
Query: 259 IYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDT 302
I+ + DSF+F +E A ++ I ++K KL ++++ D
Sbjct: 254 IHTESDSFLFEIEGITA-SPETILKKGIRIIKDKLKELKMATDN 296
>gi|429216770|ref|YP_007174760.1| DNA-directed RNA polymerase subunit alpha [Caldisphaera lagunensis
DSM 15908]
gi|429133299|gb|AFZ70311.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Caldisphaera lagunensis DSM 15908]
Length = 280
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 23/285 (8%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V I + ++ L + NALRR+++++VPT+A+D V N + + DE IAHRL
Sbjct: 5 VDILDFNNNRITVYLEGFPIAFGNALRRLVLSDVPTMAVDYVYFYDNDTSVYDEIIAHRL 64
Query: 72 GLIPLTSERAM-SMRFSRDCDA-CDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
GL+ L S+ A+ +C + D C + + S + V + DL SD
Sbjct: 65 GLLVLKSDDAIHKYGLPENCAGKSETDTNC-YTQIVLEKELSNDSGSGIYVKASDLKFSD 123
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
S+ P Y T IV L GQ + L A AR G GK+H KWSPA+
Sbjct: 124 ASIKP-------AYPDTP------IVYLAPGQRIHLVAYARLGRGKEHGKWSPASASVLQ 170
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y + IN + +E + E + + NT Y + + ++ E
Sbjct: 171 YTTLVDINGEKATDECIECVSYYKEVANS--LKARENTTIEYKTNI-----NTSGLRYCE 223
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
++++ + TVES G+++ Q++L A L ++++
Sbjct: 224 ESSCKDIIKVRYDSSRLLLTVESNGSLEPQQIILEASNSLDRRVE 268
>gi|71749338|ref|XP_828008.1| DNA-directed RNA polymerase subunit alpha [Trypanosoma brucei
TREU927]
gi|70833392|gb|EAN78896.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 337
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F++ + +AN RR+M+ EVP A D + IE N V+ DE +AHR+GL+PL S
Sbjct: 53 FDMDNVSPPVANMFRRLMLTEVPVFAFDRILIEHNDGVVPDELLAHRIGLVPLAGP-VSS 111
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
M++ D + D + F L DV + +YS P+ +
Sbjct: 112 MQYITDSASVGFDNLDPERVLLFELDVTAKR----DVPTTSVYSGHLKWQPIAKQEELAA 167
Query: 144 DSTDQQ-----RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
S D + I++ +L GQ L+LRAIA KGIG HAKW+P A
Sbjct: 168 RSEDDRVFLVHPDIVLTRLGPGQRLKLRAIAIKGIGAVHAKWTPVA 213
>gi|357612390|gb|EHJ67960.1| DNA-directed RNA polymerase [Danaus plexippus]
Length = 322
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 152/310 (49%), Gaps = 53/310 (17%)
Query: 5 SYQRFPK---VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
++++F K + I + +F+L + ANA RR+M++EVP++AI+ V I+ N+S+
Sbjct: 32 NFKKFTKKFRIVIVRMDSTEMEFDLIGIQPAFANAFRRLMLSEVPSMAIEKVMIKNNTSI 91
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTL--- 118
+ DE +AHRLGLIPL ++ + F R +A +G EF ++EF L+ KC +++
Sbjct: 92 IQDEVLAHRLGLIPLKADPRL-FEF-RPENAEEG---TEFDTLEFSLKIKCTNNKYGPKD 146
Query: 119 DVTSKDLYSSDHSVVPVDF-VDPAGYDSTDQQRG--------IIIVKLRRGQELRLRAIA 169
++DLY +HSV P G ++ + I+I K+R G EL + +
Sbjct: 147 SFRAEDLY-ENHSVYSSSIKWHPIGNQASIHKEADVGPVDDDILISKMRPGHELDMHLVV 205
Query: 170 RKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQ 229
T ++ PE+ + ++ S + + + SP V +D + G+
Sbjct: 206 HIF----------DTTASYRLLPEVTLTREVDGSEATLLQSCF---SPG-VIGLDSD-GK 250
Query: 230 VYVVDA-------EAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLV 282
+V DA AY YD IK A + + D FIF VES GA+ + +
Sbjct: 251 AFVRDARYDSCSRNAYRYD--CIKDAVILSR--------IRDHFIFNVESVGAMPPNVIF 300
Query: 283 LNAIEVLKQK 292
+ A+++L+ K
Sbjct: 301 VEAVKILRDK 310
>gi|448306201|ref|ZP_21496110.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
gi|445598615|gb|ELY52670.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
Length = 249
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 134/297 (45%), Gaps = 64/297 (21%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D YA+F +R + AN LRR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEHEDRYARFLVRGVTPAFANGLRRAMLADVPTLAIDTVRFIENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ F+ D S++ A + S DL SSD
Sbjct: 67 GLVPLTT--PPEAEFAEDDTVT--------LSIDVEGPATAY--------SGDLVSSDDL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D I I+ L+ Q L A A GK+HAK A + + +
Sbjct: 109 VQPAD-------------ENIPIIDLKDNQRLEAEADAVFNRGKNHAKHQGAVSAGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE-- 249
+ + +DL E EE++S + V++A D E+I+ +E
Sbjct: 156 QRVTVVDDLPE---FEEQESRIIRG---------------VIEA-----DGELIQTSEFD 192
Query: 250 ---AMGKPG-LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
+ PG VE+ ++F+F +E+ G+ +LV A + + + DAV+L
Sbjct: 193 NDLSNRYPGKQVEVEDVPNAFVFNIETDGSFPVDELVTRAADSIAARATDLEDAVQL 249
>gi|261333779|emb|CBH16774.1| DNA-directed RNA polymerase, alpha subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
F++ + +AN RR+M+ EVP A D + IE N V+ DE +AHR+GL+PL S
Sbjct: 53 FDMDNVSPPVANMFRRLMLTEVPVFAFDRILIEHNDGVVPDELLAHRIGLVPLAGP-VSS 111
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
M++ D + D + F L DV + +YS P+ +
Sbjct: 112 MQYITDSASVGFDNLDPERVLLFELDVTAKR----DVPTTSVYSGHLKWQPIAKQEELAA 167
Query: 144 DSTDQQ-----RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
S D + I++ +L GQ L+LRAIA KGIG HAKW+P A
Sbjct: 168 RSEDDRVFLVHPDIVLTRLGPGQRLKLRAIAIKGIGAVHAKWTPVA 213
>gi|387592898|gb|EIJ87922.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
Length = 297
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 132/283 (46%), Gaps = 40/283 (14%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
+ + D S+ NA+RR +I++VPT+AI V I N +V+ DE ++HRLGLIP+ + +
Sbjct: 48 YRINHIDPSVLNAMRRTIISDVPTVAIHWVYIRENETVMADEILSHRLGLIPIIVD---A 104
Query: 84 MRFSRDCDACDGDGQCEFC---SVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDP 140
F R + D E S++ L ++D+ L V S D+ + +
Sbjct: 105 KDFERVVKTPELDPFTELTDKNSIQMELVITNNTDKILTVRSNDIKILSKTNAAI----- 159
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
++ +II +L G+++ R A G G++H+KW P + + ++ + +
Sbjct: 160 --------KQNVIITRLVPGKKIECRLFAIIGTGREHSKWMPTSVCYYRTIKKLEMKD-- 209
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV-DAEAYTYDDEVIKKAEAMGK-PGLVE 258
P+K +I + V + +A +D+++ + K P ++
Sbjct: 210 ----------------PSKAAEIQKYFRDGFSVRNGQAIVDEDKLLVNMDIEKKYPNEIK 253
Query: 259 IYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 301
I+ + DSF+F +E A ++ I ++K KL ++++ D
Sbjct: 254 IHTESDSFLFEIEGITA-SPETILKKGIRIIKDKLKELKMATD 295
>gi|448298705|ref|ZP_21488732.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
gi|445591007|gb|ELY45218.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
Length = 249
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 131/301 (43%), Gaps = 72/301 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +RD + AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEREDRDARFLVRDVTPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ F D S++ A + S DL SSD
Sbjct: 67 GLVPLTT--PPEGEFVEDDTVT--------LSIDVEGPATAY--------SGDLVSSDDL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I++L+ GQ L A A GK+HAK V + +
Sbjct: 109 VQPAD-------------DNVPIIELKDGQRLEAEADAVLERGKNHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ + +DL E EE++S + E PT FD D +
Sbjct: 156 QRVSVVDDLPE---FEEQESQIVRGVIEDDGELVPTSEFDHDLSN--------------- 197
Query: 243 EVIKKAEAMGKPG-LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVR 297
PG VE+ ++F+F VE+ G+ +LV A++ ++ + DAV+
Sbjct: 198 ---------RYPGKQVEVEDVPNAFVFRVETDGSFTVEELVTRAVDSIEARATELEDAVQ 248
Query: 298 L 298
L
Sbjct: 249 L 249
>gi|325968486|ref|YP_004244678.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
gi|323707689|gb|ADY01176.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
Length = 317
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 129/286 (45%), Gaps = 38/286 (13%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
VK+ E D Y K + + NALRRV I++VP +AID V I N+SVL DE +AHRL
Sbjct: 21 VKVIEKSDLYMKAVVDGITPPLINALRRVFISDVPVLAIDEVIILDNTSVLYDEVLAHRL 80
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
+IP+ ++ + +C+ D C V F L + + + + V +DL S D
Sbjct: 81 SMIPIKTDLKKLPKIE-ECEQELVDPS--LCQVRFELNVE--AKEPVVVYGRDLKSDDPE 135
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V PV + IVKL GQ++ L A A+ G ++HAKW A + Y
Sbjct: 136 VRPV-------------YEDVPIVKLVPGQKIVLEAYAKLGRARNHAKWQ-AGLAAYYYY 181
Query: 192 PEIHI----NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
P++ + N+ M + ++ + G + + D T++ K
Sbjct: 182 PKVSVVDKANDKCMTCTEICNGALEIK-----------DDGSIMIHDVLKCTFNK--WKT 228
Query: 248 AEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
E + +++ E+ ++F VES G + +V +LK K
Sbjct: 229 CEQVC--SALKVDWDENKYVFWVESFGNMPVEDMVREGFRILKGKF 272
>gi|365757905|gb|EHM99776.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 224
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 18/206 (8%)
Query: 103 SVEFHLRAKC--HSDQTLDVT-SKDLYSSDHSVVPVDFVDPAGYDST--------DQQRG 151
++ L KC + D D T K+LY++ H +P G ST
Sbjct: 20 TIVLSLNVKCTRNPDAPKDCTDPKELYNNAHVYARDLKFEPQGRQSTTFAACSVVPADPD 79
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I++ KLR GQE+ L+A GIG DHAK+SP +T ++ P+I+I ++S+ E +
Sbjct: 80 ILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINI----LQSIKGESAKR 135
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
+ + P V ID + + YV DA T EV++ E K V++ + FIF VE
Sbjct: 136 FQKCFPPGVIGIDETSREAYVKDARKDTVSREVLRYEEFADK---VKLGRVRNHFIFNVE 192
Query: 272 STGAIKASQLVLNAIEVLKQKLDAVR 297
S GA+ ++ ++ +LK K + ++
Sbjct: 193 SAGAMTPEEIFFKSVRILKNKAEYLK 218
>gi|448317558|ref|ZP_21507108.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
gi|445602949|gb|ELY56919.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
Length = 249
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 128/301 (42%), Gaps = 72/301 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D A+F +R AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVERGDREARFLVRGITPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ F D S++ A + S DL SSD
Sbjct: 67 GLVPLTT--PPEGEFVEDDTVT--------LSIDVEGPATAY--------SGDLVSSDSL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I++L+ GQ L A AR GKDHAK V + +
Sbjct: 109 VEPAD-------------ENVPIIELKDGQRLEAEADARLERGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ + +DL E +E +S + E PT FD D +T
Sbjct: 156 QRVEVVDDLPE---FQEPESQIVRGVVEENGELVPTSEFDHDLSTRH------------- 199
Query: 243 EVIKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVR 297
PG + + ++F+F VE+ G+ +LV A++ ++ + DAV+
Sbjct: 200 -----------PGKEIRLEDVPNAFVFHVETDGSFSVEELVTRAVDSIEARATELEDAVQ 248
Query: 298 L 298
L
Sbjct: 249 L 249
>gi|435847148|ref|YP_007309398.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
gi|433673416|gb|AGB37608.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
Length = 249
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 122/291 (41%), Gaps = 68/291 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D A+F +R AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVERGDREARFLVRGISPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ F D S++ A + S DL SSD
Sbjct: 67 GLVPLTT--PPEGEFVEDDTVT--------LSIDVEGPATAY--------SGDLVSSDSL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I++L+ GQ L A AR GKDHAK V + +
Sbjct: 109 VEPAD-------------ENVPIIELKEGQRLEAEADARLERGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ + +DL E +E +S + E PT FD D +T
Sbjct: 156 QRVEVVDDLPE---FQEPESRIVRGVVEENGELVPTSEFDHDLSTRH------------- 199
Query: 243 EVIKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG V + ++F+F VE+ G+ +LV A + L+ +
Sbjct: 200 -----------PGKEVRLEDVPNAFVFHVETDGSFSVEELVTRATDSLEAR 239
>gi|269986616|gb|EEZ92898.1| RNA polymerase insert [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 248
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 128/286 (44%), Gaps = 43/286 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K +I E KD+ AK L D SM NALRR +I V T+ I+ V+I N+S + DE +A R
Sbjct: 2 KAEIVETKDNTAKILLEDFKVSMVNALRRSIINGVNTLTIEDVKIYKNTSFMYDEILASR 61
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ + + G G+ F E +A V + DL SD
Sbjct: 62 LGLIPIKTPIELK-----------GKGKFSFKLKEMGPKA---------VHASDLVPSDK 101
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP ++I+ L+ G+ + L A G G DH+K++PA V + +
Sbjct: 102 DVVPA-------------ISDMLIINLKDGEAIDLEAETAWGNGADHSKFTPAH-VFYHF 147
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
P+I I ++ + P + D + +T V + D + K E
Sbjct: 148 YPKITIPNSKVKGAA-----KIASLCPVDILDGEKDTLSV----KKGKLSDCILCKACED 198
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
++ I ++ D IF +ES G + +++ A+ L++++ +
Sbjct: 199 YAGSDVISISSQNDKMIFEIESWGQLSVKEILNEAVSTLEEEVKEI 244
>gi|448400361|ref|ZP_21571353.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
gi|445667384|gb|ELZ20027.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
Length = 249
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 129/300 (43%), Gaps = 70/300 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +R + AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEREDREARFLVRGVTPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ F+ D S++ A + S DL SSD
Sbjct: 67 GLVPLTTPPVGE--FTEDDTVT--------LSIDVEGPATAY--------SGDLVSSDEL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D I I++L+ Q L A A GKDHAK V + +
Sbjct: 109 VQPAD-------------ENIPIIELKDDQRLEAEADAVLDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ ++ DL E EE++S + E PT FD D + Y D
Sbjct: 156 QRVEVDGDLPE---FEEQESRIIRGVIEDDGELVPTSEFDHDLSN-----------RYPD 201
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
+ ++ + ++F+F VE+ G+ +LV A E + + DAV+L
Sbjct: 202 KQVRVEDV------------PNAFVFHVETDGSFTVEELVTRAAETIAMRATELEDAVQL 249
>gi|313126017|ref|YP_004036287.1| DNA-directed RNA polymerase subunit d [Halogeometricum borinquense
DSM 11551]
gi|448285857|ref|ZP_21477096.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
gi|312292382|gb|ADQ66842.1| DNA-directed RNA polymerase, subunit D [Halogeometricum borinquense
DSM 11551]
gi|445575887|gb|ELY30350.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
Length = 260
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 130/289 (44%), Gaps = 51/289 (17%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E D A+F +R ++AN +RR MIA+VPT +ID V NSSV+ DE I R
Sbjct: 6 EVEFIERDDRKARFLVRGMTPAVANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT+ D Q + ++ + + S D+ +SD
Sbjct: 66 LGLVPLTT-------------PLDDFEQGDTVTLALDVEGPATA------YSGDIETSDE 106
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V P + + I++L++GQ L L A A G GK HAK V + +
Sbjct: 107 LVKPA-------------EDNVPIIELKQGQRLELEADAVLGDGKSHAKHQGGVAVGYRH 153
Query: 191 EPEIHINEDLMESLSLEEKQSWV------ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
+H E + ++ EE++ + E + D G++ +D+++
Sbjct: 154 ---LHRVEVVGDANEFEEQEPNILRGVIEEQAAEHAADESAEDGEL----VPTSEFDNDL 206
Query: 245 IKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
K+ PG VE++ +F+F VE+ G+ +LV A+E + +
Sbjct: 207 TKR-----YPGKEVEVHDVPGAFVFHVETDGSFTVPELVRRAVESISDR 250
>gi|352682847|ref|YP_004893371.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
gi|350275646|emb|CCC82293.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
Length = 281
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 9 FPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIA 68
P K+ E + + + S+ N++RR +I+EVP A+D V I N+S + DE +A
Sbjct: 1 MPHAKVLERDNLRLRAYIEGAKPSLVNSIRRAVISEVPVFAVDQVIIINNTSSMYDEMLA 60
Query: 69 HRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSS 128
HR+GLIPLT+ F + + G C+V L+ +T V + DL S
Sbjct: 61 HRIGLIPLTTPLG---EFPKIEECESGLVDPAECTVRLTLQVTAEEART--VYAGDLISE 115
Query: 129 DHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTF 188
V PV P IVKL +GQ + + A AR G ++HAKW A T+
Sbjct: 116 HPGVKPVYPEMP-------------IVKLAKGQSISIEAYARLGRAREHAKWQ-AGLATY 161
Query: 189 MYEPEIHINED 199
Y P++ I +D
Sbjct: 162 YYFPKVTIVKD 172
>gi|378754855|gb|EHY64883.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Nematocida sp.
1 ERTm2]
Length = 271
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 142/288 (49%), Gaps = 34/288 (11%)
Query: 9 FPKVKIRELKD--DYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEF 66
++++R++ D D F + +AS+ NALRR +I++ P+IA+ V I N +V+ DE
Sbjct: 5 LARIEVRKVADGPDTLSFRVNQIEASVLNALRRTIISDTPSIAVHWVYIRENETVMADEI 64
Query: 67 IAHRLGLIPLTSERAMSMRFSRDCDACDGDGQ-CEFCSVEFHLRAKCHSDQTLDVTSKDL 125
++HRLGLIP+ ++ + R + D + + S++ L + +D+ L V S D+
Sbjct: 65 LSHRLGLIPILADSSTLKNIVR-SEVLDPLAELTDENSIKMELNVENTTDKVLTVRSNDI 123
Query: 126 YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185
++ T ++ +II +L G+ + + +A G G++HAKW P +
Sbjct: 124 KIVSNT-------------KTTLKQNVIITRLAPGKRIECKMLAVVGTGREHAKWMPTSV 170
Query: 186 VTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVI 245
+ ++ + +D+ +++ E Q + F I+ G+ V+D + + ++
Sbjct: 171 CYYRSIKKLEM-KDISKAM---EIQKYFRDG----FAIE--NGK-PVIDEDRLLVNMDIE 219
Query: 246 KKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL 293
K P +++ A+ DSF F +E+ A ++ + +LK KL
Sbjct: 220 K-----NYPNEIKVRAEPDSFFFEIEAI-ANSPKSILKKGLGILKNKL 261
>gi|118490838|ref|XP_001238728.1| rna polymerase ii b3 subunit [Eimeria tenella strain Houghton]
gi|109238511|emb|CAK51475.1| rna polymerase ii b3 subunit [Eimeria tenella]
Length = 147
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 54/68 (79%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
+++ EL + +F L + DAS+ANALRRVMI+EVPT+AIDLV + N+SVL+DE+I HRL
Sbjct: 44 IRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRL 103
Query: 72 GLIPLTSE 79
GL+P+ S
Sbjct: 104 GLLPIDSS 111
>gi|162605758|ref|XP_001713394.1| DNA-directed RNA polymerase 40k chain [Guillardia theta]
gi|13794326|gb|AAK39703.1|AF083031_60 DNA-directed RNA polymerase 40k chain [Guillardia theta]
Length = 339
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 35/279 (12%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPL-TSER 80
K L+ + + N++RR ++A+V T++I+ V I NS+V DE I+HRLGL+P+ S
Sbjct: 62 CKINLKGISSLIINSIRRTIMADVKTLSIEKVYIYKNSTVFGDEIISHRLGLVPIFISTE 121
Query: 81 AMSMRFSR-DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK----DLYSSDHSVVPV 135
+ + +R D ++ + S+ L++ K DLY + + PV
Sbjct: 122 LLRIYENRAKNDPNIIINLDINNNIYNKTKISIFSEM-LNLMYKSIEFDLYK-NQLIFPV 179
Query: 136 DFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIH 195
R I+I+K+ GQE+ G +HAK+SP T+ + EP +
Sbjct: 180 -------------YRDILILKINPGQEIHCECHCLINSGLNHAKFSPVGTIFYRMEPYVK 226
Query: 196 INEDLMESLSLEEKQSWVESSPTKVFDIDP--NTGQVYVVDAEAYTYDDEVIK---KAEA 250
I L E +S + S+++ PT VF+++ N ++YV +++ T+ E IK K++
Sbjct: 227 I---LKEIISFDS-SSFLKICPTGVFEVEKLGNLSRIYVKNSKFCTFCKECIKMNFKSKC 282
Query: 251 MGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVL 289
+ K G +I +ESTG L AI++L
Sbjct: 283 IIKIGRNKIKIN-----LIIESTGVSSPENLFKRAIDLL 316
>gi|300711111|ref|YP_003736925.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|448296790|ref|ZP_21486841.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|299124794|gb|ADJ15133.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|445580773|gb|ELY35147.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
Length = 248
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 129/272 (47%), Gaps = 51/272 (18%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+I E D A+F +R + AN +RR M+A+VPT++ID V NSSV+ +E +A RL
Sbjct: 7 VEIIERDDRSARFLVRGATPAFANGIRRAMLADVPTLSIDSVRFIENSSVMFNEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PL++ + G+ +++ A + S DL SSD
Sbjct: 67 GLVPLSTPEDYEL------------GEDVTLALDVEGPATAY--------SGDLVSSDEQ 106
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D R + I++L+ GQ L L A A +G++HAK V + +
Sbjct: 107 VEPAD-------------RNVPIIELKEGQRLELEADAVLDVGREHAKHQGGVAVGYRHL 153
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
++I D E +E+ + V ++ + G++ + D +D ++ +
Sbjct: 154 VRVNIEGDREE--FADEEANIVRGV------VETDEGELVLTD----EFDHDLTNR---- 197
Query: 252 GKPGL-VEIYAKEDSFIFTVESTGAIKASQLV 282
PG + + D+F+F VE+ G++ AS+LV
Sbjct: 198 -YPGKELRLEDVPDAFVFHVETDGSMTASELV 228
>gi|269860308|ref|XP_002649876.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
gi|220066716|gb|EED44189.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
Length = 282
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 60/289 (20%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F+L ++ +++NALRR++ +E+ A V I N S+ DE++AHR+GLIP+ + +
Sbjct: 46 EFDLINSTPALSNALRRILTSEIRWYAFHDVFISQNDSIFPDEYLAHRIGLIPVKLKASE 105
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAG 142
+ F +V+++L+ ++ +T++V S + S+
Sbjct: 106 T-----------------FQTVDYYLKVSNNTKETINVYSNSIVST-------------- 134
Query: 143 YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLME 202
+ D Q+ ++I KL + ++ +GIGK H KWSP A TF P I +N
Sbjct: 135 IEIFDIQKDVLICKLAPKNTISMKLRIAEGIGKTHVKWSPVALCTFRLLPHIKLNRKFTG 194
Query: 203 SLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKP-------G 255
++ K + + G + +V+ EA+ + + E M + G
Sbjct: 195 EDAVRLKNACSQ-------------GVIEIVNDEAFVKN----PRLETMSREVLREFSDG 237
Query: 256 LVEIYAKEDSFIFTVESTGAIKASQLVLN-AIEVLKQKLDAVRLSEDTV 303
VE+ + F VE G ++ ++L AI VLK+K A LS V
Sbjct: 238 SVELSRVAGHYCFCVE--GLLENPLVILQKAILVLKEK--ATNLSNQLV 282
>gi|156936978|ref|YP_001434774.1| DNA-directed RNA polymerase subunit D [Ignicoccus hospitalis
KIN4/I]
gi|156565962|gb|ABU81367.1| DNA-directed RNA polymerase, subunit D [Ignicoccus hospitalis
KIN4/I]
Length = 283
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 140/284 (49%), Gaps = 49/284 (17%)
Query: 32 SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFS---- 87
++ NA+RR + P +A+D + ++ N S L +E +AHRL +IPL SE A+ R++
Sbjct: 23 AVLNAIRRAALELAPKMAVDFIAVDRNDSTLFNEVLAHRLAMIPLRSEEALE-RYAPPEA 81
Query: 88 -RDC-------DACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVD 139
+C D C DG+ C V +L A Q + V SKDL S D V PV
Sbjct: 82 CMECTPEEAEADKCVVDGK--PCYVRLYLDASAEGKQII-VYSKDLKSEDEDVRPV---- 134
Query: 140 PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINED 199
Y++ I +V L Q++++ A AR G G++HAKW PA + I +
Sbjct: 135 ---YEN------IPVVPLIGDQKVKVIAYARLGRGREHAKWMPAT---------VSIVKP 176
Query: 200 LMESLSLEEK------QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGK 253
L++ +S++E Q + F + G++ + + + I+ GK
Sbjct: 177 LLKGISVKEGLCDAECQKECAEKCKEAFVM--KDGKLTLKEGTTLSMVMYCIEYV-CEGK 233
Query: 254 PGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
G+ ++ +ED+++F +ES G++ A + ++ A + + +KL ++
Sbjct: 234 -GIRPVF-EEDTYLFELESDGSLSARRTLVEAAKAVVEKLSELK 275
>gi|88687066|emb|CAJ43894.1| RNA polymerase I subunit RPC40 [Trypanosoma brucei brucei]
Length = 337
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Query: 33 MANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDA 92
+AN RR+M+ EVP A D + IE N V+ DE +AHR+GL+PL SM++ D +
Sbjct: 62 VANMFRRLMLTEVPAFAFDRILIEHNDGVVPDELLAHRIGLVPLAGP-VSSMQYITDSAS 120
Query: 93 CDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQ--- 149
D + F L DV + +YS P+ + S D +
Sbjct: 121 VGFDNLDPERVLLFELDVTAKR----DVPTTSVYSGHLKWQPIAKQEELAARSEDDRVFL 176
Query: 150 --RGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
I++ +L GQ L+LRAIA KGIG HAKW+P A
Sbjct: 177 VHPDIVLTRLGPGQRLKLRAIAIKGIGAVHAKWTPVA 213
>gi|448409409|ref|ZP_21574707.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
gi|445673012|gb|ELZ25579.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
Length = 255
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 130/290 (44%), Gaps = 43/290 (14%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E D A+F +R + AN +RR M+A+VPT +ID + + NSSV+ DE I R
Sbjct: 5 EVEFVERGDREARFLVRGITPAFANGIRRAMVADVPTFSIDELRVVENSSVMFDEQIGLR 64
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT+ A D +G ++ + +T+ S D+ SSD
Sbjct: 65 LGLVPLTTPEGEFEIGDEVTLALDVEGP-----------SREETTETVTAYSGDIVSSDE 113
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
V P + I I+ L+ GQ L A A G+DHAK V + +
Sbjct: 114 MVRPAN-------------DNIPIIDLKAGQRLEAEADAVLDRGRDHAKHQGGVAVGYRH 160
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250
+ + D K + + P + + G++ D + +++ ++
Sbjct: 161 LQRVEVVGD---------KGEFADEEPHILRGVVEEDGELVHTDE----FGNDLTQR--- 204
Query: 251 MGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLS 299
PG +E+ ++F+F VE+ G++ +LV A+ L+ + D +R S
Sbjct: 205 --YPGKEIEVEDVPNAFVFHVETDGSLTVDELVTRAVGSLRDRADELRES 252
>gi|308158822|gb|EFO61385.1| DNA-directed RNA polymerase subunit D [Giardia lamblia P15]
Length = 350
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 148/335 (44%), Gaps = 43/335 (12%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++Q + IR+ + D FE+ + +AN +RR+++ EVPT+AID V + NSS+
Sbjct: 23 DLSAFQDRLEYVIRKDECDTFSFEVINLSPIIANTIRRIILDEVPTMAIDTVVVHENSSI 82
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
+ DE +HRLGL+P+ + + DGD E +V F L + + +
Sbjct: 83 IADEIFSHRLGLVPMNIDPRLFEYHE------DGDKIHERNTVVFKLDVTAPATYSGNFN 136
Query: 122 SKD-----LYSSDHSVVPV----DFVD-----------PAGYDSTDQQRGIIIVKLRRGQ 161
++ +YS D +PV D++ PA D I++ KL GQ
Sbjct: 137 GEEPGWFYVYSRDICWIPVGGQKDWLLKQEVRSDMSSLPAPLDP-----NILLAKLAPGQ 191
Query: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINED-LMESLSL-----EEKQSWVES 215
+ KGIG+ HAK+ P T + + +I +++D L+ + E +
Sbjct: 192 RIFCELYCHKGIGRMHAKFQPVGTAWYKMKTQIALDKDKLLHHPEVNGDADELVAKLHKV 251
Query: 216 SPTKVF-DID-----PNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFT 269
P VF DID + Y EA T E I + + + +FT
Sbjct: 252 CPISVFADIDRQLDIEDFSVRYPDRVEACTLCRECIAAFTDEQNQCGIRLELIKTHLVFT 311
Query: 270 VESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
+ES +A + L A+ V++QK ++ S T E
Sbjct: 312 IESCSWYRARDIYLAALTVMQQKAALLKSSLKTGE 346
>gi|150401521|ref|YP_001325287.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
gi|150014224|gb|ABR56675.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
Length = 197
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 78/163 (47%), Gaps = 41/163 (25%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
KF + S ++ALRR+M++ VPT AI+ V NSS + DE +AHRL LIP+T + +
Sbjct: 17 KFTIGGAPISFSSALRRIMVSSVPTYAIENVYFYENSSSMYDEILAHRLALIPITGKPVI 76
Query: 83 S---MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVD 139
S +RFS +G C V S DL S S+V D
Sbjct: 77 SDEVVRFS-----IMKEGPC-------------------TVYSADLESESDSMVAFD--- 109
Query: 140 PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
I IVKL+ GQ+L L A G+GK+HAKW P
Sbjct: 110 -----------NIPIVKLKEGQKLELECEALVGVGKNHAKWQP 141
>gi|399576713|ref|ZP_10770468.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
gi|399238157|gb|EJN59086.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
Length = 249
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 128/296 (43%), Gaps = 64/296 (21%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D A+F +R ++AN +RR MIA+VPT++ID V NSSV+ DE IA RL
Sbjct: 7 VEFIERGDRKARFLVRGLTPAIANGIRRAMIADVPTLSIDSVRFVENSSVMFDEMIALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ S D D +GD E L LDV S
Sbjct: 67 GLVPLTT--------SLD-DFEEGD--------EVTL--------ALDVEGPATAYSGDM 101
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V V++V PA I I++L+ GQ L A A GK HAK V + +
Sbjct: 102 VSSVEYVQPA-------DENIPIIELKEGQHLEFEADAVLDSGKSHAKHQGGVAVGYRHL 154
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
++ + D T FD G+ ++ T D E+I E
Sbjct: 155 QKVEVVGD------------------TPEFD----DGEPNILRGVIETEDGELI-HTEEF 191
Query: 252 GK------PGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
G PG VE+ +F+F VE+ G+ +LVL A+E L L A L E
Sbjct: 192 GNDLTQQFPGKEVEVSDVPGAFVFHVETDGSFTVEELVLRAVESL--GLRAAELEE 245
>gi|448565309|ref|ZP_21636176.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
gi|445715053|gb|ELZ66809.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
Length = 259
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 126/285 (44%), Gaps = 44/285 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E +D A+F R ++AN +RR M+A+VPT +ID V N+SV+ DE I R
Sbjct: 6 QVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEMIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT+ D GD + D S D+ S+D
Sbjct: 66 LGLVPLTTPLG---------DFEPGD----------TVTVALEVDGPATAYSGDIESADD 106
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP D I I++L+ GQ L A A G GKDHAK V + +
Sbjct: 107 MVVPAD-------------ENIPIIELKEGQRLEFEADAVLGYGKDHAKNQGGVAVGYRH 153
Query: 191 EPEIHINEDLMESLSLEEK--QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
+ + D E E + +E + + + D G + + T+ +++ ++
Sbjct: 154 LQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAEDGDLVATE----TFGNDLTER- 208
Query: 249 EAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG VE++ +F+F+VE+ G+ +LV A+ L +
Sbjct: 209 ----YPGKEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASLGDR 249
>gi|327311714|ref|YP_004338611.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
gi|326948193|gb|AEA13299.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
Length = 279
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 131/285 (45%), Gaps = 33/285 (11%)
Query: 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAH 69
P K+ E + + K + S+ N++RR++I+EVP AID V I N+S + DE +AH
Sbjct: 2 PSAKVLERDNLHLKLYIEGVKPSLINSIRRIIISEVPVFAIDQVLIVNNTSSMYDEMLAH 61
Query: 70 RLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
RLGLIPLT+ + + +C+ G C+V F L+ +D V S DL S
Sbjct: 62 RLGLIPLTTPLDLFPKI-EECET--GMVDPAECTVRFTLQVT--ADDAKTVYSGDLVSDH 116
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V PV + D I IVKL +GQ + L A AR G K+HAKW A T+
Sbjct: 117 PDVKPV-YPD------------IPIVKLVKGQSISLEAYARLGRAKEHAKWQ-AGLATYY 162
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249
Y P++ + E+ Q + I P+ + + Y +K E
Sbjct: 163 YFPKLIVKG--------EDPQCLAQCK-----SICPDAFGNSLNEFNPYKCTFGKLKTCE 209
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+ GL+ + +I +ES G + +++ A + K KL+
Sbjct: 210 NLCG-GLLAVDWDRFKYIMNIESYGNMDVDKMLSEAFRIFKVKLN 253
>gi|332030550|gb|EGI70238.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Acromyrmex
echinatior]
Length = 371
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 17/173 (9%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
+F++ S+ NA RR +++EVP++AI+ V I N+S++ DE +AHRLGLIPL ++ +
Sbjct: 2 EFDISGCHTSLVNAFRRTLLSEVPSMAIEKVYIINNTSLIQDEVLAHRLGLIPLRADPRL 61
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK---------DLYSSDHSVV 133
+S + D D + ++ + L+ C+ + S+ +YS D V
Sbjct: 62 -FEYSPN-DKKTDDTVSDNDTLRYELKVTCNINPQAPKNSRLPEDMYKNSKVYSKDIKWV 119
Query: 134 PVDFVDPAGYDSTDQ----QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
P+ A +Q + I+I K+R G E+ L A KGIGKDHAK+SP
Sbjct: 120 PIG--RQAEKFKAEQIGILENDILICKMRPGHEIHLFMHAVKGIGKDHAKFSP 170
>gi|448346280|ref|ZP_21535166.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
gi|445632869|gb|ELY86075.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
Length = 249
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 54/292 (18%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +R AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ G+ + S++ A + S DL SSD
Sbjct: 67 GLVPLTTPPVGEF----------GEDETVTLSIDVEGPATAY--------SGDLVSSD-- 106
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
D V+PA + I++L+ GQ L A A GKDHAK V + +
Sbjct: 107 ----DLVEPA-------DENVPIIELKDGQRLEAEADAVIDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
+ + DL E E+++S + + + + G++ +D ++ +
Sbjct: 156 QRVEVEGDLPE---FEDEESRI------IRGVIEDDGEL----VSTSEFDHDLSNR---- 198
Query: 252 GKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
PG V I ++F+F VE+ G+ +LV A + + ++ DAV+L
Sbjct: 199 -YPGKEVRIEDVPNAFVFHVETDGSFPIEELVTRAADTIAERATELEDAVQL 249
>gi|167044977|gb|ABZ09642.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG8G2]
Length = 214
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 85/183 (46%), Gaps = 34/183 (18%)
Query: 6 YQRF----PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
+Q+F P ++I D +L+ ANALRR+ + VP AID V++ NSSV
Sbjct: 9 FQKFSISLPSIQILTSDDKKISIKLKGISLHYANALRRICLNGVPIFAIDTVDVIENSSV 68
Query: 62 LNDEFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
+ DE IAH LG+IPL +E SR D + ++ T V
Sbjct: 69 IPDEGIAHTLGMIPLKTELNGFDESNSRVILVLDSEA----------------AENTKIV 112
Query: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
TS +L S D V P+ + I IV L GQ ++L A AR G G +HAKW
Sbjct: 113 TSAELESKDQVVKPIS-------------KQIPIVHLAPGQRIKLEAYARLGRGTEHAKW 159
Query: 181 SPA 183
+ A
Sbjct: 160 NSA 162
>gi|315425723|dbj|BAJ47379.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
gi|343484524|dbj|BAJ50178.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
Length = 215
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 18/159 (11%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
++ D +ANALRR++I EVPT+A++ + + NSS + +E +AHR+ LIP ++ +
Sbjct: 13 LDVTDLPHPLANALRRMIIREVPTMAVEEILVIENSSPMTNEVLAHRISLIPFITDLD-N 71
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH--SVVPVDFVDPA 141
+ +C +C CE C V F LRA+ +DQ + V S+D+ H V P D
Sbjct: 72 FNVAEEC-SCQSRLGCEKCVVRFVLRAEA-ADQPVTVYSRDIKPERHDTKVAPFDG---- 125
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
I IV L Q++ L R G G+ HAKW
Sbjct: 126 ---------NIPIVVLAPRQKIELELYVRLGRGRKHAKW 155
>gi|433418975|ref|ZP_20405134.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|448546358|ref|ZP_21626522.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|448548345|ref|ZP_21627612.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|448557539|ref|ZP_21632728.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|448568220|ref|ZP_21637797.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|448600839|ref|ZP_21656218.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|448602318|ref|ZP_21656374.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|448622863|ref|ZP_21669512.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
gi|432199583|gb|ELK55744.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|445702811|gb|ELZ54751.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|445714096|gb|ELZ65863.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|445714440|gb|ELZ66202.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|445727170|gb|ELZ78784.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|445734852|gb|ELZ86408.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|445747833|gb|ELZ99287.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|445753371|gb|EMA04788.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
Length = 259
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 44/285 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E +D A+F R ++AN +RR M+A+VPT +ID V N+SV+ DE I R
Sbjct: 6 QVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEMIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT+ D + D + D S D+ S+D
Sbjct: 66 LGLVPLTTPL-------DDFEPGD------------TVTVALEVDGPATAYSGDIESADD 106
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP D I I++L+ GQ L A A G GKDHAK V + +
Sbjct: 107 MVVPAD-------------ENIPIIELKEGQRLEFEADAVLGYGKDHAKNQGGVAVGYRH 153
Query: 191 EPEIHINEDLMESLSLEEK--QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
+ + D E E + +E + + + D G + + T+ +++ ++
Sbjct: 154 LQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAEDGDLVATE----TFGNDLTER- 208
Query: 249 EAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG VE++ +F+F+VE+ G+ +LV A+ L +
Sbjct: 209 ----YPGKEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASLGDR 249
>gi|336252152|ref|YP_004595259.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
gi|335336141|gb|AEH35380.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
Length = 249
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 122/290 (42%), Gaps = 66/290 (22%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D A+F +R + AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVERDDREARFLVRGVTPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ F D S++ A + S DL SSD
Sbjct: 67 GLVPLTT--PPEDEFGEDATVT--------LSIDVEGPATAY--------SGDLESSDEL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I++L+ Q L A A GKDHAK A V + +
Sbjct: 109 VQPAD-------------ENVPIIELKDDQRLEAEADAVLDRGKDHAKHQGAVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ + +DL E EE ++ + E PT FD D + Y D
Sbjct: 156 QRVVVEDDLPE---FEESEAQIVRGVVEDDGELVPTSEFDHDLSN-----------RYPD 201
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
K+ P ++F+F VE+ G+ +LV A E ++ +
Sbjct: 202 ---KQVSVEDVP---------NAFVFHVETDGSFTVEELVTRAAETIESR 239
>gi|397772870|ref|YP_006540416.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|448340555|ref|ZP_21529526.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
gi|397681963|gb|AFO56340.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|445629988|gb|ELY83258.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
Length = 249
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 50/282 (17%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +R AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ G+ + S++ A + S DL SSD
Sbjct: 67 GLVPLTTPPVGEF----------GEDETVTLSIDVEGPATAY--------SGDLVSSDEL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I++L+ GQ L A A GKDHAK V + +
Sbjct: 109 VKPAD-------------ENVPIIELKDGQRLEAEADAVIDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
+ + DL E E+++S + + + + G++ +D ++ +
Sbjct: 156 QRVEVEGDLPE---FEDEESRI------IRGVIEDDGEL----VSTSEFDHDLSNR---- 198
Query: 252 GKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG V I ++F+F VE+ G+ +LV A + + ++
Sbjct: 199 -YPGKEVRIEDVPNAFVFHVETDGSFPIEELVTRAADTIAER 239
>gi|159116466|ref|XP_001708454.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
gi|157436566|gb|EDO80780.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
Length = 350
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 47/337 (13%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++Q + I + + D F++ + +AN +RR+++ EVPT+AID V + NSS+
Sbjct: 23 DLSAFQNRLEYVIWKDECDTFSFDVINLSPVIANTIRRIILDEVPTMAIDTVVVHENSSI 82
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVT 121
+ DE +HRLGL+P+ + + DGD E +V F L + +
Sbjct: 83 IADEIFSHRLGLVPMNIDPRLFEYHE------DGDKIHERNTVVFKLDVTAPATYSSSFN 136
Query: 122 SKD-----LYSSDHSVVPV----DFV-----------DPAGYDSTDQQRGIIIVKLRRGQ 161
++ +YS D VP+ D++ PA D I++ KL GQ
Sbjct: 137 DEEPGWFYVYSRDIYWVPIGGQKDWLLKQEVRADMSSLPAPLDP-----DILLAKLAPGQ 191
Query: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVF 221
+ KGIG+ HAK+ P T + + +I +++D + L E V+ TK+
Sbjct: 192 RIFCEIYCHKGIGRMHAKFQPVGTAWYKMKTQIALDKDAL--LQHPEVNGDVDKLVTKLH 249
Query: 222 DIDP------NTGQVYVVD--------AEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFI 267
+ P T Q+ + D EA T E I + + + +
Sbjct: 250 KVCPVNVFADVTRQLDIEDFSVHHPDRTEACTLCRECIAAFTDEQNQCGIRLELVKTHLV 309
Query: 268 FTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
FT+ES +A + L A+ V++QK ++ S T E
Sbjct: 310 FTIESCSWYRARDIYLEALTVMQQKAALLKSSLKTGE 346
>gi|389848214|ref|YP_006350453.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|448618422|ref|ZP_21666659.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|388245520|gb|AFK20466.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|445746793|gb|ELZ98251.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
Length = 260
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 128/285 (44%), Gaps = 43/285 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E +D A+F + ++AN +RR M+A+VPT +ID V N+SV+ DE I R
Sbjct: 6 EVEFIEREDRRARFVVNGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEMIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT+ D + G ++E A + S D+ S+D
Sbjct: 66 LGLVPLTTP----------LDEFE-PGDTVTVALEVDGPATAY--------SGDIESADE 106
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP D I I++L+ GQ L A A G GKDHAK V + +
Sbjct: 107 MVVPAD-------------ENIPIIELKEGQRLEFEADAVLGYGKDHAKNQGGVAVGYRH 153
Query: 191 EPEIHINEDLMESLSLEEK--QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
+ + D E E + +E + + D + VV E + +++ K+
Sbjct: 154 LQRVEVVGDAGEFEEQEPNILRGVIEEAAAEHADDEDAEDGDLVVTDE---FGNDLTKR- 209
Query: 249 EAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG VE++ +F+F+VE+ G+ +LV ++ L +
Sbjct: 210 ----YPGKEVEVHDVPGAFVFSVETDGSFTVDELVKRSVASLGDR 250
>gi|164661059|ref|XP_001731652.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
gi|159105553|gb|EDP44438.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
Length = 213
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 13/206 (6%)
Query: 103 SVEFHLRAKCHSD---QTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ--QRGIIIVKL 157
+V F+L+A C + + V + +YSS P DS + + I+I KL
Sbjct: 10 TVVFNLKADCWKNGNSKDATVEGRYVYSSQLEWDPKGDQAETMADSPPRPVNQDIVIAKL 69
Query: 158 RRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSP 217
GQ + + KGIGKDHAK+SP AT T+ P I I + + E L ++ P
Sbjct: 70 APGQGMEMELHCEKGIGKDHAKFSPVATATYRLLPLIEILKPIPEPLI----PKFISCFP 125
Query: 218 TKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIK 277
V G VYV DA T EV++ E G V + +D F+F+VESTG +
Sbjct: 126 EGVIHKGGENG-VYVADARKDTVTREVLRYPEFE---GYVRLGRIQDHFLFSVESTGVYE 181
Query: 278 ASQLVLNAIEVLKQKLDAVRLSEDTV 303
L+ +IEVL++K+ ++L+ D +
Sbjct: 182 PEDLLPASIEVLRKKIALLKLALDAI 207
>gi|292656898|ref|YP_003536795.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|448290898|ref|ZP_21482043.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|291371468|gb|ADE03695.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|445577951|gb|ELY32371.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
Length = 259
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 44/285 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E +D A+F R ++AN +RR M+A+VPT +ID V N+SV+ DE I R
Sbjct: 6 QVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEMIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT+ D + D + D S D+ S+D
Sbjct: 66 LGLVPLTTPL-------DDFEPGD------------TVTVALEVDGPATAYSGDIESADD 106
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP D I I++L+ GQ L A A G GKDHAK V + +
Sbjct: 107 MVVPAD-------------ENIPIIELKEGQRLEFEADAVLGHGKDHAKNQGGVAVGYRH 153
Query: 191 EPEIHINEDLMESLSLEEK--QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
+ + D E E + +E + + + D G + + T+ +++ ++
Sbjct: 154 LQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAEDGDLVATE----TFGNDLTER- 208
Query: 249 EAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG VE++ +F+F+VE+ G+ +LV A+ L +
Sbjct: 209 ----YPGKEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASLGDR 249
>gi|448611952|ref|ZP_21662382.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
gi|445742713|gb|ELZ94207.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
Length = 260
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 51/289 (17%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E +D A+F + ++AN +RR M+A+VPT +ID V N+SV+ DE I R
Sbjct: 6 EVEFIEREDRRARFVVHGLTPALANGIRRAMVADVPTFSIDTVRFVENTSVMFDEMIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT+ D GD + D S D+ S+D
Sbjct: 66 LGLVPLTTPL---------DDFEPGD----------TVTVALEVDGPATAYSGDIESADD 106
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
+VP D I I++L+ GQ L A A G GKDHAK V + +
Sbjct: 107 MIVPAD-------------ENIPIIELKEGQRLEFEADAVLGYGKDHAKNQGGVAVGYRH 153
Query: 191 EPEIHINEDLMESLSLEEKQSWV------ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
+ + D E +E++ + E++ D D G + V DA + +++
Sbjct: 154 LQRVEVVGDAGE---FDEQEPNILRGVIEEAAAEHADDEDAEDGDLVVTDA----FGNDL 206
Query: 245 IKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
K+ PG VE++ +F+F+VE+ G+ +L+ A+ L +
Sbjct: 207 TKR-----YPGKEVEVHDVPGAFVFSVETDGSFSVDELMKRAVASLGDR 250
>gi|429192481|ref|YP_007178159.1| DNA-directed RNA polymerase subunit alpha [Natronobacterium
gregoryi SP2]
gi|448325893|ref|ZP_21515271.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
gi|429136699|gb|AFZ73710.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronobacterium gregoryi SP2]
gi|445613985|gb|ELY67670.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
Length = 249
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 131/292 (44%), Gaps = 54/292 (18%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D A+F +R+ + AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVERDDRNARFLVRNVTPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ G+ S++ A + S DL SSD
Sbjct: 67 GLVPLTTPPEGEF----------GEDDTVTLSIDVEGPATAY--------SGDLVSSDDL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I++L+ GQ L A A GK+HAK V + +
Sbjct: 109 VQPAD-------------ENVPIIELKDGQRLEAEAEATLDRGKEHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
+ + D+ E EE+ S + V + + G++ +D ++ +
Sbjct: 156 QHVEVVGDVPE---FEEEGSRI------VRGVIEDDGEL----VSTTEFDHDLSNR---- 198
Query: 252 GKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
PG VEI ++F+F VE+ G+ +LV A + ++ + DAV+L
Sbjct: 199 -YPGKEVEIEDVPNAFVFHVETDGSFPIEELVTRAADTIEARATELEDAVQL 249
>gi|289191580|ref|YP_003457521.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
gi|288938030|gb|ADC68785.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
Length = 191
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 74/155 (47%), Gaps = 36/155 (23%)
Query: 32 SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCD 91
S +NA+RR+MI+EVPT AI+ V I NSS ++DE +AHRLGLIP+ + +
Sbjct: 25 SFSNAIRRIMISEVPTYAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLI--------- 75
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
+ E + C V S DL S + V +
Sbjct: 76 ------ESEVITFTLEKEGPC------TVYSSDLKSENGEVA---------------FKN 108
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
I IVKL RGQ++++ A GIGK HAKW P V
Sbjct: 109 IPIVKLGRGQKIKIECEAVPGIGKTHAKWQPCNAV 143
>gi|432957842|ref|XP_004085906.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Oryzias latipes]
Length = 264
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 21/237 (8%)
Query: 44 EVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCS 103
+VPT+AI+ V I N+S++ DE +AHRLGL+P+ ++ + + + E +
Sbjct: 36 QVPTMAIEKVFIYNNTSIVQDEVLAHRLGLVPIKADPRL-FEYKNIAEEFGEQEASEIDT 94
Query: 104 VEFHLRAKCHSDQTLDVTSKD---------LYSSDHSVVPVDFVDPAGYDST--DQQRGI 152
++ L+ KC + S D +YS D + VP+ DS I
Sbjct: 95 IQLQLKIKCSRNPRASKESSDPRELYLNHIVYSKDINWVPLGNQADVFADSRIGAVHDDI 154
Query: 153 IIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSW 212
+I +LR GQEL + KGIGKDHAK+SP AT ++ P+I LME + E+ +
Sbjct: 155 VIAQLRPGQELDVVMHCVKGIGKDHAKFSPVATASYRLLPDI----TLMEQVEGEKAERL 210
Query: 213 VESSPTKVFDIDPNTGQ--VYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFI 267
V D++ G+ VV++ T EV++ + LV++ D FI
Sbjct: 211 KRCFSRGVIDLEDVRGKKVAKVVNSRLDTCSREVLRHKDL---KNLVKLGRVRDHFI 264
>gi|448337141|ref|ZP_21526223.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
gi|445626487|gb|ELY79830.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
Length = 249
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 130/292 (44%), Gaps = 54/292 (18%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +R AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEREDREARFLVRGVTPGFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ G+ + S++ A + S DL SSD
Sbjct: 67 GLVPLTTPPVGEF----------GEDETVTLSIDVEGPATAY--------SGDLVSSDDL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I++L+ GQ L A A GKDHAK V + +
Sbjct: 109 VQPAD-------------ENVPIIELKDGQRLEAEADAVIDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
+ + DL E E+++ + + + + G++ +D ++ +
Sbjct: 156 QRVEVEGDLPE---FEDEERRI------IRGVIEDDGEL----VSTSEFDHDLSNR---- 198
Query: 252 GKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
PG V I ++F+F VE+ G+ +LV A + + ++ DAV+L
Sbjct: 199 -YPGKEVRIEDVPNAFVFHVETDGSFPIEELVTRAADTIAERATELEDAVQL 249
>gi|15790216|ref|NP_280040.1| DNA-directed RNA polymerase II [Halobacterium sp. NRC-1]
gi|169235945|ref|YP_001689145.1| DNA-directed RNA polymerase subunit D [Halobacterium salinarum R1]
gi|13124517|sp|Q9HQJ4.1|RPOD_HALSA RecName: Full=DNA-directed RNA polymerase subunit D
gi|229564264|sp|B0R4Y2.1|RPOD_HALS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|10580674|gb|AAG19520.1| DNA-directed RNA polymerase II [Halobacterium sp. NRC-1]
gi|167727011|emb|CAP13797.1| DNA-directed RNA polymerase subunit D [Halobacterium salinarum R1]
Length = 248
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 127/291 (43%), Gaps = 53/291 (18%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
S Q F V+ + D A+F +R+ + AN +RR ++ +VPT++ID V NSSV+ D
Sbjct: 2 SSQDF-DVEFVDRDDREARFVVRNITPAFANGIRRAILVDVPTLSIDTVRFVENSSVMFD 60
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
E + RLGL+PLT+ D G+ VE A S D
Sbjct: 61 EQLGLRLGLVPLTTPE----------DYAAGEAVTLALDVEGPGTAY----------SGD 100
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L S+D V D I I++L+ Q L L A A G G+DHAK
Sbjct: 101 LVSNDPEVEAAD-------------ENIPIIELKDDQRLELEADAVMGHGRDHAKHQGGV 147
Query: 185 TVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
V + + +H+ D E + + P + + ++ D +D+++
Sbjct: 148 AVGYRHLQRVHVVGDSPE---------YADDDPQMLRGVIEEDDELVPTD----DFDNDL 194
Query: 245 IKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
+ PG VEI + +F+F VES G++ +LVL A++ L + D
Sbjct: 195 TTR-----YPGKEVEIEDVDGAFVFHVESDGSMPVEELVLRAVDTLVDRAD 240
>gi|448583259|ref|ZP_21646615.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
gi|445729488|gb|ELZ81083.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
Length = 259
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 126/285 (44%), Gaps = 44/285 (15%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E +D A+F R ++AN +RR M+A+VPT +I+ V N+SV+ DE I R
Sbjct: 6 QVEFIEREDRRARFVARGLTPALANGIRRAMVADVPTFSIETVRFVENTSVMFDEMIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT+ D + D + D S D+ S+D
Sbjct: 66 LGLVPLTTPL-------DDFEPGD------------TVTVALEVDGPATAYSGDIESADD 106
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP D I I++L+ GQ L A A G GKDHAK V + +
Sbjct: 107 MVVPAD-------------ENIPIIELKEGQRLEFEADAVLGYGKDHAKNQGGVAVGYRH 153
Query: 191 EPEIHINEDLMESLSLEEK--QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
+ + D E E + +E + + + D G + + T+ +++ ++
Sbjct: 154 LQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAEDGDLVATE----TFGNDLTER- 208
Query: 249 EAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG VE++ +F+F+VE+ G+ +LV A+ L +
Sbjct: 209 ----YPGKEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASLGDR 249
>gi|342185050|emb|CCC94532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 258
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 120/273 (43%), Gaps = 34/273 (12%)
Query: 37 LRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGD 96
RR+MI EVP +A D V IE N V+ DE + HR+GLIPL M++ D + D
Sbjct: 2 FRRLMITEVPVLAFDRVLIEENDGVVPDEVLCHRIGLIPLAGP-VTWMKYITDSHSVTID 60
Query: 97 GQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQ-----RG 151
+ F L + V + +YS D P+ + S D +
Sbjct: 61 NLDPAHVLVFELDVEGQH----GVQATSVYSGDLKWRPLRSQEEVAAKSEDNRVFLVHPD 116
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I++ +L GQ L+LRAIA KGIG HAKWSP A + E E++ EE
Sbjct: 117 IVLTRLGPGQRLKLRAIAIKGIGVVHAKWSPVAACFY---------EIRHEAVRKEE--- 164
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
E+ P + ++ + DA+ +D + + V + FTVE
Sbjct: 165 --ETRPKR------HSSRHLRHDADNEEAEDVDLGSPASARGANNVSTQKGREIVRFTVE 216
Query: 272 STGAIKASQLVLNA----IEVLKQKLDAVRLSE 300
S G + A+ + +A IE ++ + VRL++
Sbjct: 217 SVGQLSAADVFRHALRLFIERMRDLVSQVRLAD 249
>gi|448578450|ref|ZP_21643885.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|448592478|ref|ZP_21651585.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
gi|445726991|gb|ELZ78607.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|445731483|gb|ELZ83067.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
Length = 260
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 51/283 (18%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E +D A+F R ++AN +RR MIA+VPT +I+ V N+SV+ DE I R
Sbjct: 6 EVEFIEREDRRARFVARGLTPALANGIRRAMIADVPTFSIETVRFVENTSVMFDEMIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGL+PLT+ D + G ++E A + S D+ S+D
Sbjct: 66 LGLVPLTTP----------LDEFE-PGDSVTVALEVDGPATAY--------SGDIESADD 106
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP D + I++L+ GQ L A A G GKDHA+ +V + +
Sbjct: 107 MVVPAD-------------ENVPIIELKEGQRLEFEADAVLGYGKDHARNQGGVSVGYRH 153
Query: 191 EPEIHINEDLMESLSLEEKQSWV------ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEV 244
+ + D E +E++ + E++ D D G + V D + +++
Sbjct: 154 LQRVEVVGDAGE---FDEQEPNILRGVIEEAAAEHAADEDAEDGDLVVTD----EFGNDL 206
Query: 245 IKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAI 286
K+ PG VE++ +F+F+VE+ G+ +LV A+
Sbjct: 207 TKR-----YPGKDVEVHDVPGAFVFSVETDGSFTVDELVTRAV 244
>gi|161899301|ref|XP_001712877.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
gi|75756371|gb|ABA27265.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
Length = 293
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 17/191 (8%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+ K+ L + + + E+ D+S+ NA+RR++++E+ TIAI+ + + N+S+LND +AHR
Sbjct: 29 QFKVLVLNNFFMEIEIVGLDSSIINAMRRILLSEIATIAIEDIYVFENTSILNDNILAHR 88
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAK--CHSDQ-TLDVTSKDL-Y 126
+GLIPL R + C D + SV L+ C+S + T D+ KD Y
Sbjct: 89 IGLIPL---RINPKQIQFQKMYCLKD---QTNSVVLILKNSNFCNSFRLTKDIFCKDFSY 142
Query: 127 SSDHSVVP----VDFV---DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
S++P V F D +S I+I KL+ Q L L A +KG H+K
Sbjct: 143 RRYGSLIPHQSRVYFSIKQDIVKKNSFLTFEDILITKLKPKQLLFLEAHCKKGYSTQHSK 202
Query: 180 WSPAATVTFMY 190
+SP A ++Y
Sbjct: 203 YSPVAAAWYLY 213
>gi|374635695|ref|ZP_09707289.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373561548|gb|EHP87781.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 194
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 108/228 (47%), Gaps = 49/228 (21%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
K KI E+ KF L+ S +NA+RR+MI+EVPT AI+ V + N+S ++DE +AHR
Sbjct: 9 KTKIGEI----FKFTLK-APISFSNAIRRIMISEVPTYAIENVYVHENTSSMHDEILAHR 63
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ + S D E + C V S DL S +
Sbjct: 64 LGLIPIKGKPV-----SED----------EVITFTLIKEGPC------TVYSSDLKSENG 102
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA-ATVTFM 189
VV + I I+KLR GQ + L A GIGK HAKW P AT +
Sbjct: 103 EVV---------------FKNIPIIKLREGQRIELVCEATVGIGKIHAKWQPCNATYKQI 147
Query: 190 YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEA 237
+ E+ E L+ES + + +++S +I N +V++ + EA
Sbjct: 148 SDDEV---EFLVESFGNMDPEDILKTS----VEILKNKAEVFLSELEA 188
>gi|118576727|ref|YP_876470.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
gi|118195248|gb|ABK78166.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
Length = 212
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
LR ANALRR+ + VP A+D V+I N+SVL DE +AHRLGLIPL R S
Sbjct: 16 IRLRGVPLQYANALRRICLNGVPVFAVDTVDIVENTSVLADEGLAHRLGLIPL---RTDS 72
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
F ++ D D + + +T V S +L S D SV P+ P
Sbjct: 73 SEF-KNLAEIDPDDPINRVMLTLD---SGEAAETRTVLSSELVSEDSSVKPISDTIP--- 125
Query: 144 DSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
IV+L GQ +++ A AR G G +HAKW+
Sbjct: 126 ----------IVELAPGQRIKVEAYARLGRGTEHAKWN 153
>gi|448630480|ref|ZP_21673135.1| DNA-directed RNA polymerase subunit D [Haloarcula vallismortis ATCC
29715]
gi|445756403|gb|EMA07778.1| DNA-directed RNA polymerase subunit D [Haloarcula vallismortis ATCC
29715]
Length = 259
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 132/296 (44%), Gaps = 50/296 (16%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E + A+ +R + AN +RR M+A+VPT +ID V + N+SV+ +E I R
Sbjct: 6 EVEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNEQIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACD-GDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
LGL+PLT+ D D + GD SV D S DL SSD
Sbjct: 66 LGLVPLTT----------DLDDFEIGDEVTLSLSV----------DGPATAYSSDLVSSD 105
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V D I I+ L+ GQ L + A A G++HAK V +
Sbjct: 106 PMVEAAD-------------DNIPIIDLKEGQRLEVEADAVLDTGREHAKHQGGVAVGYR 152
Query: 190 YEPEIHINEDLMESLSLEEK--QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
+ ++ + DL E + + +E + D G++ D +D+++ +
Sbjct: 153 HLQQVEVVGDLGEFEDDDPNILRGVIEEQAAEHAAGDATNGELVATDE----FDNDLRNR 208
Query: 248 AEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
PG VE+ ++F+F VE+ G+ +LVL A+E L+ + DAV+L
Sbjct: 209 -----YPGKEVEVSDVPNAFVFHVETDGSFTTEELVLRAVETLRDRATELKDAVQL 259
>gi|161899303|ref|XP_001712878.1| DNA-directed RNA polymerase II third largest subunit [Bigelowiella
natans]
gi|75756372|gb|ABA27266.1| DNA-directed RNA polymerase II third largest subunit [Bigelowiella
natans]
Length = 291
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 133/279 (47%), Gaps = 31/279 (11%)
Query: 30 DASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRD 89
D S +A++ ++ + T+A D + I N+S NDEFIAHR+GLIPL S
Sbjct: 25 DTSFTHAIKNIVENSIITLAADTIMIFENTSNFNDEFIAHRIGLIPLISNTLY------- 77
Query: 90 CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD--HSVVPVDFVDPAGYDSTD 147
+AC+ + + + F + C ++ + V++KD + + V P+ + + YD +
Sbjct: 78 -EACNWEKNPK---IVFDINKFCKNNSSCFVSTKDYRCNTFRNRVTPIGY---SYYDKIN 130
Query: 148 QQRG--------IIIVKLRRGQELRLRAIARKGIGKDHAKW-SPAATVTFMYEPEIHINE 198
Q+ I+I+KL++ Q L ++ +KG G DH KW S + F P I
Sbjct: 131 QENKFNLVNYSHILILKLKQSQVLSMKITLKKGKGSDHTKWCSNYGNILF---PIPTIRW 187
Query: 199 DLMESLSLEE-KQSWVESSPTKVFDI-DPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL 256
+L+ L +++ S++ + + +I + + Q+ + + E + +
Sbjct: 188 NLIMLLMMDKMNTSYLCDTLLDIVNITNIHHNQILNSHMIENLQNSSIHSLFEFLKSTKI 247
Query: 257 VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDA 295
V+ + +F F ES G++ +++ ++E L ++LD
Sbjct: 248 VKFGGLQKTF-FKFESNGSLLPKYILIFSMEALVKRLDC 285
>gi|448689118|ref|ZP_21694855.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
gi|445778988|gb|EMA29930.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
Length = 259
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 132/296 (44%), Gaps = 50/296 (16%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E + A+ +R + AN +RR M+A+VPT +ID V + N+SV+ +E I R
Sbjct: 6 EVEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNEQIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACD-GDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
LGL+PLT+ D D + GD SV D S DL SSD
Sbjct: 66 LGLVPLTT----------DLDDFEIGDEVTLSLSV----------DGPATAYSSDLVSSD 105
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V D I I+ L+ GQ L + A A G++HAK V +
Sbjct: 106 PMVEAAD-------------DNIPIIDLKEGQRLEVEADAVLDTGREHAKHQGGVAVGYR 152
Query: 190 YEPEIHINEDLMESLSLEEK--QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
+ ++ + DL E + + +E + D G++ D +D+++ +
Sbjct: 153 HLQQVEVVGDLGEFEDDDPNILRGVIEEQAAEHAAGDATNGELVATDE----FDNDLRNR 208
Query: 248 AEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
PG VE+ ++F+F VE+ G+ +LVL A+E L+ + DAV+L
Sbjct: 209 -----YPGKDVEVSDVPNAFVFHVETDGSFTTEELVLRAVETLRDRATELKDAVQL 259
>gi|304274348|gb|ADM18921.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274350|gb|ADM18922.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D AS++ KV + L +F+L DAS+ANA+RR++IAEVPT+AI+ V + N+S+
Sbjct: 10 DLASFRNHLKVAVNSLSSGAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSI 69
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
+ DE +A RLGLIPL + + +D D D +V F L A+C
Sbjct: 70 IQDEVLAQRLGLIPLAID-PRKLEIKKDADEAPTD----LNTVVFGLVARC 115
>gi|448391689|ref|ZP_21566784.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
gi|445665101|gb|ELZ17779.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
Length = 249
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 123/291 (42%), Gaps = 72/291 (24%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F +R AN +RR M+A+VPT+AID V NSSV+ DE +A RLGL+PLT+
Sbjct: 17 ARFLVRGVTPGFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPE 76
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
G+ + S++ A +S DL S+D V P D
Sbjct: 77 GEF----------GEDETVTLSIDVEGPATAYS--------GDLVSNDELVQPAD----- 113
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ + I+ L+ Q L A A GKDHAK V + + ++ + DL
Sbjct: 114 --------QNVPIIDLKDDQRLEAEADAVVDYGKDHAKHQGGVAVGYRHLQQVEVVGDLP 165
Query: 202 ESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMG 252
E E+++S + E PT FD D +
Sbjct: 166 E---FEDEESRIVRGVIEDNGELVPTSEFDHDLSNR------------------------ 198
Query: 253 KPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
PG VE+ ++F+F VE+ G+ +LV A + ++ + DAV+L
Sbjct: 199 YPGKEVEVEDVPNAFVFHVETDGSFSVEELVTRAADSIESRATELEDAVQL 249
>gi|148679203|gb|EDL11150.1| mCG12281 [Mus musculus]
Length = 138
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 33/142 (23%)
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+P ++ + + +
Sbjct: 11 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDP-----DNALRHTVYPKPEE 65
Query: 212 WVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVE 271
W +S + ++D +DE + GKP + F + VE
Sbjct: 66 WPKS---EYSELD----------------EDESQAPYDPNGKP---------ERFYYNVE 97
Query: 272 STGAIKASQLVLNAIEVLKQKL 293
S G+++ +VL+A+ LK+KL
Sbjct: 98 SCGSLRPETIVLSALSGLKKKL 119
>gi|261403745|ref|YP_003247969.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
gi|261370738|gb|ACX73487.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
Length = 191
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 73/155 (47%), Gaps = 36/155 (23%)
Query: 32 SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCD 91
S +NA+RR+MI+EVPT AI+ V I NSS ++DE +AHRLGLIP+ + +
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLLDTEII--TF 82
Query: 92 ACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRG 151
+ +G C V S DL S + V +
Sbjct: 83 TLEKEGPC-------------------TVYSSDLKSENGEVA---------------FKN 108
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
I IVKL +GQ +++ A GIGK HAKW P V
Sbjct: 109 IPIVKLGKGQRIKIECEAVPGIGKVHAKWQPCNAV 143
>gi|304274362|gb|ADM18928.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D AS++ KV + L +F+L DAS+ANA+RR++IAEVPT+AI+ V + N+S+
Sbjct: 10 DLASFRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSI 69
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
+ DE +A RLGLIPL + + +D D D +V F L A+C
Sbjct: 70 IQDEVLAQRLGLIPLAID-PRKLEIKKDADEAPTD----LNTVVFGLVARC 115
>gi|55376999|ref|YP_134849.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|344211110|ref|YP_004795430.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|448640850|ref|ZP_21677637.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|448651240|ref|ZP_21680309.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|448667520|ref|ZP_21686020.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|448678705|ref|ZP_21689712.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
gi|1350858|sp|Q00813.1|RPOD_HALMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|148773|gb|AAA73212.1| ribosomal protein HmaRp-alpha subunit [Haloarcula marismortui]
gi|55229724|gb|AAV45143.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|343782465|gb|AEM56442.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|445761375|gb|EMA12623.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|445770088|gb|EMA21156.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|445770767|gb|EMA21825.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|445772692|gb|EMA23737.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
Length = 259
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 132/296 (44%), Gaps = 50/296 (16%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
+V+ E + A+ +R + AN +RR M+A+VPT +ID V + N+SV+ +E I R
Sbjct: 6 EVEFVERGEREARILVRGITPAFANGIRRAMVADVPTFSIDTVRVIENTSVMFNEQIGLR 65
Query: 71 LGLIPLTSERAMSMRFSRDCDACD-GDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSD 129
LGL+PLT+ D D + GD SV D S DL SSD
Sbjct: 66 LGLVPLTT----------DLDDFEIGDEVTLSLSV----------DGPSTAYSSDLVSSD 105
Query: 130 HSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
V D I I+ L+ GQ L + A A G++HAK V +
Sbjct: 106 PMVEAAD-------------DNIPIIDLKEGQRLEVEADAVLDTGREHAKHQGGVAVGYR 152
Query: 190 YEPEIHINEDLMESLSLEEK--QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKK 247
+ ++ + DL E + + +E + D G++ D +D+++ +
Sbjct: 153 HLQQVEVVGDLGEFEDDDPNILRGVIEEQAAEHAAGDATNGELVATDE----FDNDLRNR 208
Query: 248 AEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
PG VE+ ++F+F VE+ G+ +LVL A+E L+ + DAV+L
Sbjct: 209 -----YPGKDVEVSDVPNAFVFHVETDGSFTTEELVLRAVETLRDRATELKDAVQL 259
>gi|304274352|gb|ADM18923.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274354|gb|ADM18924.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274356|gb|ADM18925.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D AS++ KV + L +F+L DAS+ANA+RR++IAEVPT+AI+ V + N+S+
Sbjct: 10 DLASFRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSI 69
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
+ DE +A RLGLIPL + + +D D + + +V F L A+C
Sbjct: 70 IQDEVLAQRLGLIPLAID-PRKLEIKKDAD----EAPTDLNTVVFGLVARC 115
>gi|406694412|gb|EKC97739.1| hypothetical protein A1Q2_07938 [Trichosporon asahii var. asahii
CBS 8904]
Length = 278
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 10/157 (6%)
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I++VKLR GQ + L ARKG+G DHAK+SP AT ++ P I L E + LE+++
Sbjct: 126 ILLVKLRPGQMVDLHCFARKGVGADHAKYSPVATASYRLLPHI----ILREPIPLEDQEK 181
Query: 212 WVESSPTKVFDIDPN---TGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIF 268
+ V +++ + QV V + T EV++ E K VE+ D FIF
Sbjct: 182 FKSCFAPGVIELEKDADGNQQVVVKNPRKDTASREVLRHKEFQDK---VELARIRDHFIF 238
Query: 269 TVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEA 305
VES G +LV AI+++ K+ AV D + A
Sbjct: 239 NVESAGQYPPEELVPEAIKIMLSKISAVEAGLDKLFA 275
>gi|448727623|ref|ZP_21709972.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
gi|445789609|gb|EMA40288.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
Length = 248
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 63/285 (22%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--- 78
A+F +R + AN +RR M+A+VPT++ID V + NSSV+ DE I HRLG++PL +
Sbjct: 17 ARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVVENSSVMFDEQIGHRLGMVPLATPPD 76
Query: 79 --ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVD 136
E S+ D D S DL S D V P
Sbjct: 77 EFEMGESVTLGLDVSGPDT------------------------AYSGDLQSMDSMVEPA- 111
Query: 137 FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
++ + I++L+ Q L + A A GK HAK A V + + + +
Sbjct: 112 ------------EQNVPIIELKDDQRLEVEADAVLDTGKSHAKHQGAVAVGYRHLQTVDV 159
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL 256
D ++ + + P + + + G++ + +D+++ ++ PG
Sbjct: 160 VGD---------REEFADEEPNILRGVIEDDGELIPTE----EFDNDLTER-----YPGK 201
Query: 257 -VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
+++ ++F+F VE+ G++ +LVL A++ L + A LSE
Sbjct: 202 ELDVQDVPNAFVFDVETDGSMSVEELVLAAVDSLDAR--ATELSE 244
>gi|304274360|gb|ADM18927.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D AS++ KV + L +F+L DAS+ANA+RR++IAEVPT+AI+ V + N+S+
Sbjct: 10 DLASFRNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSI 69
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
+ DE +A RLGLIPL + + +D D + + +V F L A+C
Sbjct: 70 IQDEVLAQRLGLIPLAID-PRKLEIKQDAD----EAPTDLNTVVFGLVARC 115
>gi|256810443|ref|YP_003127812.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
gi|256793643|gb|ACV24312.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
Length = 191
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 76/158 (48%), Gaps = 42/158 (26%)
Query: 32 SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS---MRFSR 88
S +NA+RR+MI+EVPT AI+ V I NSS ++DE IAHRLGLIP+ + + + F+
Sbjct: 25 SFSNAIRRIMISEVPTYAIEDVYIFENSSSMDDEIIAHRLGLIPIKGKPLLENEIITFT- 83
Query: 89 DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ 148
+ +G C V S DL S + V
Sbjct: 84 ----LEKEGPC-------------------TVYSSDLKSENGEVA--------------- 105
Query: 149 QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
+ I IVKL GQ++++ A GIGK HAKW P V
Sbjct: 106 FKNIPIVKLGNGQKIQIECEAVPGIGKVHAKWQPCNAV 143
>gi|15668364|ref|NP_247160.1| DNA-directed RNA polymerase subunit D [Methanocaldococcus
jannaschii DSM 2661]
gi|2500626|sp|Q57648.1|RPOD_METJA RecName: Full=DNA-directed RNA polymerase subunit D
gi|1590937|gb|AAB98172.1| DNA-directed RNA polymerase, subunit D (rpoD) [Methanocaldococcus
jannaschii DSM 2661]
Length = 191
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 42/158 (26%)
Query: 32 SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS---MRFSR 88
S +NA+RR+MI+EVPT AI+ V I NSS ++DE +AHRLGLIP+ + + + F+
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLLENEVITFT- 83
Query: 89 DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ 148
+ +G C V S DL S + V
Sbjct: 84 ----LEKEGPC-------------------TVYSSDLKSENGEVA--------------- 105
Query: 149 QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
+ I IVKL +GQ +++ A GIGK HAKW P V
Sbjct: 106 FKNIPIVKLGKGQRIQIECEAIPGIGKVHAKWQPCNAV 143
>gi|448322475|ref|ZP_21511945.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
gi|445601233|gb|ELY55222.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
Length = 249
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 122/291 (41%), Gaps = 68/291 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E + +F +R + AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVERGNREGRFLVRGITPAFANGIRRAMVADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ F D S++ A + S DL SSD
Sbjct: 67 GLVPLTT--PPEGEFVEDDTVT--------LSIDVEGPATAY--------SGDLVSSDSL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V D + I++L+ GQ L A AR GK+HAK V + +
Sbjct: 109 VEAAD-------------ENVPIIELKEGQRLEAEAEARLERGKNHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ + +DL E +E +S + E PT FD D +T
Sbjct: 156 QRVEVVDDLPE---FQEPESQIVRGVVEENGELVPTSEFDHDLSTRH------------- 199
Query: 243 EVIKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG V + ++F+F VE+ G+ +LV A++ ++ +
Sbjct: 200 -----------PGKEVHLEDVPNAFVFHVETDGSFSVEELVTRAVDSIEAR 239
>gi|448361735|ref|ZP_21550348.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
gi|445649415|gb|ELZ02352.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
Length = 249
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 123/300 (41%), Gaps = 70/300 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +R + AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ G+ S++ A + S DL SSD
Sbjct: 67 GLVPLTTPPEGEF----------GEDDTVTLSIDVEGPATAY--------SGDLISSDEL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I+ L+ Q L A A GKDHAK V + +
Sbjct: 109 VQPAD-------------ENVPIIDLKDDQRLEAEADAVLDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ EDL E E+ +S + E PT FD D + Y D
Sbjct: 156 QRVAAVEDLPE---FEDPESRIVRGVIEDDGELVPTSEFDHDLSN---------RYPGKD 203
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
++ ++F+F VE+ G+ LV A E ++ + DAV+L
Sbjct: 204 VTVEDV--------------PNAFVFHVETDGSFTVEDLVTRAAETIESRAIELEDAVQL 249
>gi|253744733|gb|EET00889.1| DNA-directed RNA polymerase subunit D [Giardia intestinalis ATCC
50581]
Length = 350
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 145/338 (42%), Gaps = 49/338 (14%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++Q + I++ + D F++ + +AN +RR+++ EVPTIAID V + NSS+
Sbjct: 23 DLSAFQSRLEYIIQKDEYDLFSFDVINLSPVIANTIRRIILDEVPTIAIDTVVVHENSSI 82
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSD------ 115
+ DE +HRLGL+P+ + + DGD E +V F L +
Sbjct: 83 IADEIFSHRLGLVPMNIDPRLFEYHE------DGDKIHERNTVVFKLDVTAPATYPGSFQ 136
Query: 116 ----QTLDVTSKDL----------YSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQ 161
+ V S+D+ + + V P PA D I++ KL GQ
Sbjct: 137 DGEPRWFYVYSRDIHWVPIGGQKNWLPEQEVRPGTSSLPAPLDP-----DILLAKLAPGQ 191
Query: 162 ELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM--------ESLSLEEKQSWV 213
+ KG+G HAK+ P T + + ++ +++D + + L EK V
Sbjct: 192 RIFCEIYCHKGVGHTHAKFQPVGTAWYKMKTQVSLDKDALLQHPEIGGNAGKLVEKLHKV 251
Query: 214 ESSPTKVF-------DIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSF 266
P VF DI+ + + + EA T E I V I +
Sbjct: 252 --CPVGVFAGVDRQLDIEDFSTR-HPERVEACTLCRECIAGFTDEQSQCGVRIELIKTHL 308
Query: 267 IFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
+FT+ES +A + L A+ V++QK ++ S T E
Sbjct: 309 VFTIESCSWYRARDIYLEALTVMQQKAVLLKSSLKTGE 346
>gi|448739234|ref|ZP_21721249.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
gi|445799829|gb|EMA50198.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
Length = 248
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 125/285 (43%), Gaps = 63/285 (22%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--- 78
A+F +R + AN +RR MIA+VPT++ID V + NSSV+ DE I HRLG++PL +
Sbjct: 17 ARFLVRGITPAFANGIRRAMIADVPTLSIDTVRVVENSSVMFDEQIGHRLGMVPLAAPPD 76
Query: 79 --ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVD 136
E S+ D D S DL S D V P
Sbjct: 77 EFEMGESVTLGLDVSGPDT------------------------AYSGDLQSMDSMVEPA- 111
Query: 137 FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
++ + I++L+ Q L + A A GK HAK V + + + +
Sbjct: 112 ------------EQNVPIIELKDDQRLEIEADAVLDTGKSHAKHQGGVAVGYRHLQTVDV 159
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL 256
D ++ + + P + + + G++ + +D+++ ++ PG
Sbjct: 160 VGD---------REEFADEEPNILRGVIEDDGELIPTE----EFDNDLTER-----YPGK 201
Query: 257 -VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
+++ ++F+F VE+ G++ +LVL A++ L + A LSE
Sbjct: 202 ELDVQDVPNAFVFDVETDGSMSVEELVLAAVDSLDAR--ATELSE 244
>gi|238599273|ref|XP_002394835.1| hypothetical protein MPER_05213 [Moniliophthora perniciosa FA553]
gi|215464510|gb|EEB95765.1| hypothetical protein MPER_05213 [Moniliophthora perniciosa FA553]
Length = 182
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 84/203 (41%), Gaps = 41/203 (20%)
Query: 93 CDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL------------YSSDHSVVPVDFVDP 140
C C +CS+ L C T+D+TS L + S DF P
Sbjct: 2 CTCTSYCPYCSITLLLNVSCPDAVTMDITSNHLEVQTDIDVGLDEPGEELSKRTPDFGHP 61
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
G + Q ++I K+R+GQEL+L+ +A+KGI K+HAKWSP + V F Y+P
Sbjct: 62 VGKNKLGAQ-PVLICKIRKGQELKLKCVAKKGIAKEHAKWSPCSAVAFEYDP-------- 112
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIY 260
L W E+ + + N + E DDE+
Sbjct: 113 --YNKLRHTSYWFETDERAEWPVSENGRE------EEPPRDDEIFN------------YN 152
Query: 261 AKEDSFIFTVESTGAIKASQLVL 283
AK F F VE+ G++ ++V+
Sbjct: 153 AKPRKFYFDVETDGSLGPQEVVM 175
>gi|284165822|ref|YP_003404101.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
gi|284015477|gb|ADB61428.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
Length = 249
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 118/287 (41%), Gaps = 72/287 (25%)
Query: 26 LRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMR 85
+R AN +RR M+A+VPT+AID V NSSV+ DE +A RLGL+PLT+
Sbjct: 21 VRGVTPGFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPEGEF- 79
Query: 86 FSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDS 145
G+ + S++ A +S DL SSD V P D
Sbjct: 80 ---------GEDETVTLSIDVEGPATAYS--------GDLVSSDDLVQPAD--------- 113
Query: 146 TDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLS 205
+ I+ L+ Q L A A GKDHAK V + + + + DL E
Sbjct: 114 ----ENVPIIDLKDDQRLEAEADAVLDYGKDHAKHQGGVAVGYRHLQRVEVVGDLPE--- 166
Query: 206 LEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL 256
EE++S + E PT FD D + PG
Sbjct: 167 FEEEESRIVRGVIEDDGELVPTSEFDHDLSNRY------------------------PGK 202
Query: 257 -VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
VEI ++F+F VE+ G+ +LV A + ++ + DAV+L
Sbjct: 203 EVEIEDVPNAFVFHVETDGSFSVEELVTRAADSIESRATDLEDAVQL 249
>gi|448368976|ref|ZP_21555743.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
gi|445651519|gb|ELZ04427.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
Length = 249
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 123/300 (41%), Gaps = 70/300 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +R + AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PL++ G+ S++ A + S DL SSD
Sbjct: 67 GLVPLSTPPEGEF----------GEDDTVTLSIDVEGPATAY--------SGDLISSDEL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I+ L+ Q L A A GKDHAK V + +
Sbjct: 109 VQPAD-------------ENVPIIDLKDDQRLEAEADAVLDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ EDL E E+ +S + E PT FD D + Y D
Sbjct: 156 QRVAAVEDLPE---FEDSESRIVRGVIEDDGELVPTSEFDHDLSN---------RYPGKD 203
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
++ ++F+F VE+ G+ LV A E ++ + DAV+L
Sbjct: 204 VTVEDV--------------PNAFVFHVETDGSFTVEDLVTRAAETIESRATELEDAVQL 249
>gi|448348754|ref|ZP_21537602.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
gi|445642415|gb|ELY95483.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
Length = 249
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 123/300 (41%), Gaps = 70/300 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +R + AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEREDRDARFLVRGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PL++ G+ S++ A + S DL SSD
Sbjct: 67 GLVPLSTPPEGEF----------GEDDTVTLSIDVEGPATAY--------SGDLISSDEL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I+ L+ Q L A A GKDHAK V + +
Sbjct: 109 VQPAD-------------ENVPIIDLKDDQRLEAEADAVLDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ EDL E E+ +S + E PT FD D + Y D
Sbjct: 156 QRVAAVEDLPE---FEDPESRIVRGVIEDDGELVPTSEFDHDLSN---------RYPGKD 203
Query: 243 EVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
++ ++F+F VE+ G+ LV A E ++ + DAV+L
Sbjct: 204 VTVEDV--------------PNAFVFHVETDGSFTVEDLVTRAAETIESRATELEDAVQL 249
>gi|304274344|gb|ADM18919.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274346|gb|ADM18920.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
gi|304274358|gb|ADM18926.1| putative DNA-directed RNA polymerase III [Sporidiobolus
salmonicolor]
Length = 171
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D AS+ KV + L +F+L DAS+ANA+RR++IAEVPT+AI+ V + N+S+
Sbjct: 10 DLASFCNHLKVAVNSLSSAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSI 69
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
+ DE +A RLGLIPL + + +D D + + +V F L A+C
Sbjct: 70 IQDEVLAQRLGLIPLAID-PRKLEIKKDAD----EAPTDLNTVVFGLVARC 115
>gi|6172230|dbj|BAA85898.1| RNA-polymerase D [Halobacterium salinarum]
Length = 249
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 122/302 (40%), Gaps = 74/302 (24%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
S Q F V+ + D A+F +R+ + AN +RR ++ +VPT++ID V NSSV+ D
Sbjct: 2 SSQDF-DVEFVDRDDREARFVVRNITPAFANGIRRAILVDVPTLSIDTVRFVENSSVMFD 60
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
E + RLGL+PLT+ ++ + E L T D
Sbjct: 61 EQLGLRLGLVPLTTPE-------------------DYPAGEVTLALDVEGPGT--AYPGD 99
Query: 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAA 184
L S+D V D I I++L+ Q L L A A G G+DHAK
Sbjct: 100 LVSNDPEVEAAD-------------ENIPIIELKDDQRLELEADAVDGHGRDHAKHQGGV 146
Query: 185 TVTFMY-----------EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVV 233
V + + PE ++ M +EE V PT FD D T
Sbjct: 147 AVGYRHLQLQRVHVVGDSPEYADDDPQMLRGVIEEDDELV---PTDDFDNDLTT------ 197
Query: 234 DAEAYTYDDEVIKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG VEI + +F+F VES G++ +LVL A++ L +
Sbjct: 198 ------------------RYPGKEVEIEDVDGAFVFHVESDGSMPVEELVLRAVDTLVDR 239
Query: 293 LD 294
D
Sbjct: 240 AD 241
>gi|448728476|ref|ZP_21710804.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
gi|445796958|gb|EMA47443.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
Length = 248
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 124/277 (44%), Gaps = 51/277 (18%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F +R + AN +RR M+A+VPT+++D V + NSSV+ DE I HRLG++PL+ A
Sbjct: 17 ARFLVRGITPAFANGIRRAMVADVPTLSVDTVRVVENSSVMFDEQIGHRLGMVPLS---A 73
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
F D G LDV+ D S V V+PA
Sbjct: 74 PPNEFEPDDSVTLG----------------------LDVSGPDTAYSGDLVSSDSVVEPA 111
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ + I++L+ Q L + A A GK HAK V + + ++ + D
Sbjct: 112 -------EDNVPIIELKEDQRLEVEAEAVLDTGKSHAKHQGGVAVGYRHLQKVEVVGD-- 162
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL-VEIY 260
++ + + P + + G++ + +D+++ + PG V +
Sbjct: 163 -------REEFADEEPNILRGVIEEDGELIPTE----EFDNDLTNR-----YPGKEVTVE 206
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
++F+F VE+ G++ +LV A++ L+ + + ++
Sbjct: 207 DVPNAFVFHVETDGSLTVEELVTAAVDSLETRANELK 243
>gi|354610855|ref|ZP_09028811.1| DNA-directed RNA polymerase subunit D [Halobacterium sp. DL1]
gi|353195675|gb|EHB61177.1| DNA-directed RNA polymerase subunit D [Halobacterium sp. DL1]
Length = 247
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 50/283 (17%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D + F +R+ + AN +RR ++A+VPT++I+ V NSSV+ DE IA RL
Sbjct: 7 VEFIERGDRESLFVVRNITPAFANGIRRAILADVPTLSIEDVRFVENSSVMFDEQIALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ ++ GD VE A S DL SSD
Sbjct: 67 GLVPLTTPDDFAV----------GDTVTLALDVEGPGTAY----------SGDLVSSDPD 106
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V D + + I++L+ Q L A A G+DHAK V + +
Sbjct: 107 VEAAD-------------KNVPIIELKDDQRLEFEADAVLAHGRDHAKHQGGVAVGYRHL 153
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
++ + D + + + P + + + G++ +D+++ ++
Sbjct: 154 QQVDVVGD---------RGEYADDEPEMIRGVVEDDGEL----VRTEEFDNDLTERYPEQ 200
Query: 252 GKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLD 294
VEI +F+F VES G++ S+LVL A++ L + D
Sbjct: 201 E----VEISDVPGAFVFHVESDGSMPVSELVLRAVDTLVDRAD 239
>gi|433590977|ref|YP_007280473.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|448334510|ref|ZP_21523685.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|448385452|ref|ZP_21563958.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
gi|433305757|gb|AGB31569.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|445619842|gb|ELY73359.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|445656947|gb|ELZ09779.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
Length = 249
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 122/301 (40%), Gaps = 72/301 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +R AN +RR MIA+VPT+AID V NSSV+ DE +A R+
Sbjct: 7 VEFVEREDREARFLVRGVTPGFANGIRRAMIADVPTMAIDTVRFVENSSVMFDEQLALRM 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ F+ D ++DV D S
Sbjct: 67 GLVPLTTPPVGE--FAEDDTVT----------------------LSIDVEGPDTAYSGDL 102
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V D V PA + I+ L+ GQ L A A GKDHAK V + +
Sbjct: 103 VSEDDLVQPA-------DENVPIIDLKDGQRLEAEADAVIDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ + DL E E+++ + E PT FD D +
Sbjct: 156 QRVEVEGDLPE---FEDEERRIIRGVIEDDGELVPTSEFDHDLSNRY------------- 199
Query: 243 EVIKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVR 297
PG V + ++F+F VE+ G+ +LV A + L+ + DAV+
Sbjct: 200 -----------PGKEVRVEDVPEAFVFHVETDGSFSIEELVTRAADTLEARATELEDAVQ 248
Query: 298 L 298
L
Sbjct: 249 L 249
>gi|448330852|ref|ZP_21520128.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
gi|445610688|gb|ELY64457.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
Length = 249
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 54/292 (18%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F +R AN +RR M+A+VPT+A+D V NSSV+ DE +A R+
Sbjct: 7 VEFVEREDREARFLIRGVTPGFANGIRRAMVADVPTMAVDTVRFVENSSVMFDEQLALRM 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ G+ + S++ A + S DL S D
Sbjct: 67 GLVPLTTPPVGEF----------GEDETVTLSIDVEGPATAY--------SGDLVSEDDL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I++L+ GQ L A A GK+HAK V + +
Sbjct: 109 VQPAD-------------DNVPIIELKDGQRLEAEADAVVNRGKNHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
+ ++ DL E E+++S + + + + G++ +D ++ +
Sbjct: 156 QRVEVDGDLPE---FEDEESRI------IRGVIEDDGELVATS----EFDHDLSNR---- 198
Query: 252 GKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
PG V + ++F+F VE+ G+ +L A + + + DAV+L
Sbjct: 199 -YPGKEVRVEDVPNAFVFHVETDGSFPIEELATRAADTIAARATELEDAVQL 249
>gi|255636318|gb|ACU18498.1| unknown [Glycine max]
Length = 233
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 7/132 (5%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+++ L D +F++ D ++ANA RR+++AEVPT+AI+ V I N+SV+ DE ++HR
Sbjct: 87 KVEVKRLTDSDIEFDMIGIDPAIANAFRRILVAEVPTMAIERVYIANNTSVVQDEVLSHR 146
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSKDL-YSS 128
LGLIP+ RA F +A GD + E ++ F L +C Q + V S L +
Sbjct: 147 LGLIPI---RADPRLFEYPENA--GDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLP 201
Query: 129 DHSVVPVDFVDP 140
+ S +P + V P
Sbjct: 202 NGSELPCEDVKP 213
>gi|333910738|ref|YP_004484471.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
gi|333751327|gb|AEF96406.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
Length = 195
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 75/161 (46%), Gaps = 37/161 (22%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
KF L+ S +NA+RR+MI+EVPT AI+ V + N+S ++DE +AHRLGLIP+ +
Sbjct: 17 KFTLK-APISFSNAIRRIMISEVPTYAIENVYVHENTSSMHDEILAHRLGLIPIKGK--- 72
Query: 83 SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAG 142
S D E + C V S DL S + V
Sbjct: 73 --PISED----------EVITFTLVKEGPC------TVYSSDLKSENGEVA--------- 105
Query: 143 YDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
+ I I+KL+ GQ + L A GIGK HAKW P
Sbjct: 106 ------FKNIPIIKLKEGQRIELVCEATVGIGKVHAKWQPC 140
>gi|448352729|ref|ZP_21541510.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|448358769|ref|ZP_21547445.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
gi|445642008|gb|ELY95079.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|445644783|gb|ELY97792.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
Length = 249
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 118/291 (40%), Gaps = 68/291 (23%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E +D A+F ++ + AN +RR M+A+VPT+AID V NSSV+ DE +A RL
Sbjct: 7 VEFVEREDRDARFLVQGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRL 66
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ F D S++ A + S DL SSD
Sbjct: 67 GLVPLTTPPVGE--FVEDDTVT--------LSIDVEGPATAY--------SGDLVSSDDL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V P D + I+ L+ GQ L A A GKDHAK V + +
Sbjct: 109 VQPAD-------------ENVPIIDLKDGQRLEAEADAVLDRGKDHAKHQGGVAVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+ EDL E EE + E PT FD D +
Sbjct: 156 QRVAAVEDLPE---FEEPDRRIVRGVIEEDGELVPTSEFDHDLSN--------------- 197
Query: 243 EVIKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG V + +SF+F VE+ G+ +LV A + ++ +
Sbjct: 198 ---------RYPGQEVTLEDVPNSFVFHVETDGSFSVEELVTRAADTIESR 239
>gi|296109380|ref|YP_003616329.1| RNA polymerase insert [methanocaldococcus infernus ME]
gi|295434194|gb|ADG13365.1| RNA polymerase insert [Methanocaldococcus infernus ME]
Length = 195
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 42/158 (26%)
Query: 32 SMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM---SMRFSR 88
S +NA+RR+MI+EVPT AI+ V I NSS ++DE +AHRLGLIP+ + A ++ F+
Sbjct: 25 SFSNAIRRIMISEVPTFAIEDVFIYENSSSMDDEILAHRLGLIPIKGKPAFENETILFT- 83
Query: 89 DCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGYDSTDQ 148
+ +G C V S DL S + V
Sbjct: 84 ----LEKEGPC-------------------VVYSSDLKSDNGEVA--------------- 105
Query: 149 QRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
+ I IVKL Q +++ A GIGK HAKW P V
Sbjct: 106 FKNIPIVKLGEKQRIKIECEAVPGIGKVHAKWQPCNAV 143
>gi|397620460|gb|EJK65733.1| hypothetical protein THAOC_13380 [Thalassiosira oceanica]
Length = 1014
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 18/149 (12%)
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
I++ KLR GQ + L A ARKG+GKDHAK+SP AT ++ P I + + + + L+ EE +
Sbjct: 860 ILLAKLRPGQVIELEAHARKGVGKDHAKFSPVATASYRLMPRIEVVKPVYDDLA-EELVN 918
Query: 212 WVESSPTKVFDIDP-----NTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL---VEIYAKE 263
W E VF ++P + + VV+ A T ++ P L + +
Sbjct: 919 WFEPG---VFKLEPADDGEHAFEAKVVNPYACTCSRNFMR------NPILKESIRMSRIP 969
Query: 264 DSFIFTVESTGAIKASQLVLNAIEVLKQK 292
D FIF+VES G+++ +V A++VLK+K
Sbjct: 970 DHFIFSVESVGSMEPEVIVAEALKVLKEK 998
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 40 VMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQC 99
+MIAEVPT+A++ V + N+ +++DE ++HR+GLIPL + + + D D
Sbjct: 653 IMIAEVPTMALEYVYMWNNTGLIHDEVLSHRMGLIPLNVDPRLFDHYGLDTDDDGEPAAT 712
Query: 100 EFCSVEFHLRAKCHSDQTLD 119
+ ++ F L C D D
Sbjct: 713 DRNTIVFRLNVSCGRDAKED 732
>gi|383621940|ref|ZP_09948346.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|448702865|ref|ZP_21700222.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|445776958|gb|EMA27934.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
Length = 249
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 68/281 (24%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F +R AN +RR M+A+VPT+AID V NSSV+ DE +A RLGL+PLT+
Sbjct: 17 ARFLVRGISPGFANGIRRAMVADVPTMAIDTVRFIENSSVMFDEQLALRLGLVPLTTPPE 76
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
G+ S++ A +S DL S D V P D
Sbjct: 77 GEF----------GEDDTVTLSIDVEGPATAYS--------GDLVSEDDLVQPAD----- 113
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ I++L+ Q L A A GKDHAK + + + + + DL
Sbjct: 114 --------ENVPIIELKEDQRLEAEADAVLDHGKDHAKHQGGVAIGYRHLQRVEVVGDLP 165
Query: 202 ESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMG 252
E E+++S + E PT FD D +
Sbjct: 166 E---FEDEESRIVRGVIEDDGELVPTSEFDHDLSNRY----------------------- 199
Query: 253 KPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG VE+ ++F+F VE+ G++ +LV A + ++ +
Sbjct: 200 -PGKEVEVEDVPNAFVFHVETDGSLDVEELVTRAADSIEAR 239
>gi|301096072|ref|XP_002897134.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262107364|gb|EEY65416.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 134
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 189 MYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248
MY+P I +N+ ++ + S E+K +S PT+VF+ D N Q V DA Y DE +K A
Sbjct: 1 MYDPIITLNQAVLSTYSPEQKAELYKSCPTEVFETDENYEQFTVGDAMRCMYCDECVKLA 60
Query: 249 EAMG-KP---GLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVE 304
++ P V I +ED FIF+VE+TG +K ++V+ A++++++KL +++ +
Sbjct: 61 DSFKDNPEDDSAVSIRMREDKFIFSVETTGQLKPEEVVICALDLIREKLSSLKHQCLELS 120
Query: 305 ADDQ 308
DDQ
Sbjct: 121 QDDQ 124
>gi|349806155|gb|AEQ18550.1| putative polymerase i polypeptide subunit [Hymenochirus curtipes]
Length = 159
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
Query: 2 DGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSV 61
D +++ + I ++ D +F++ DA++AN RR+++AEVPT+A++ V + N+S+
Sbjct: 30 DQEKFEKNFHIDIVNMEGDTLEFDMVGIDAAVANTFRRILLAEVPTVAVEKVLVYNNTSI 89
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRFS-RDCDACDGDGQCEFCSVEFHLRAKC 112
+ DE +AHRLGLIP+ RA F R+ D DG E +++F L KC
Sbjct: 90 IQDEILAHRLGLIPI---RADPRLFEFRNTDEGDG---TEIDTLQFELNVKC 135
>gi|402217101|gb|EJT97183.1| hypothetical protein DACRYDRAFT_59476 [Dacryopinax sp. DJM-731 SS1]
Length = 257
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQS 211
II+VKLRRGQEL + K G+DHAK+SP AT T P + I + + E L + QS
Sbjct: 78 IILVKLRRGQELNIEMHCVKSCGRDHAKYSPVATATSRLLPYVRIFKSIPEQLQAKFTQS 137
Query: 212 W----VESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIYAKEDSFI 267
+ + S K ++ + V+V DA T V E G L + D F+
Sbjct: 138 FSPGVIGSRRNKQWEWE-----VFVKDARKDTMSRNVFLYPEFEGAVKLTRV---RDRFL 189
Query: 268 FTVESTGAIKASQLVLNAIEVLKQKLDAVRLSEDTVEADD 307
FTVES G + + ++ AI V +KL V + D + +D
Sbjct: 190 FTVESAGQMAPNAILPEAIAVFTRKLRTVSKALDELMHED 229
>gi|304274366|gb|ADM18930.1| putative DNA-directed RNA polymerase III [Sporidiobolus johnsonii]
Length = 171
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 7/109 (6%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
S++ V + +L +F+L DAS+ANA+RRV+IAEVPT+AI+ V + N+S++ D
Sbjct: 13 SFRSHLNVAVNKLSAAAIEFDLVGVDASVANAIRRVVIAEVPTVAIETVYVWNNTSIIQD 72
Query: 65 EFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
E +A RLGLIPL + R + ++ + D + + +V F L A+C
Sbjct: 73 EVLAQRLGLIPLAIDPRKLELKKAAD------EAPTDLNTVVFGLVARC 115
>gi|167045221|gb|ABZ09881.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG8O8]
Length = 201
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 80/166 (48%), Gaps = 27/166 (16%)
Query: 24 FELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS 83
+L+ ANALRR+ + V AID V++ NSSVL DE I HRLGLIPL ++ + S
Sbjct: 16 IKLKGVTLQYANALRRICLNGVAIYAIDTVDMIENSSVLADEGITHRLGLIPLKTDLSRS 75
Query: 84 MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPAGY 143
D D + L + ++ VTS +L S D V P
Sbjct: 76 -------DESD-------SRIMLTLDSGDDTETGRMVTSAELLSDDKVVKP--------- 112
Query: 144 DSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFM 189
S+DQ I I+ L GQ+L+ A AR G G +HAKW+ + +
Sbjct: 113 -SSDQ---IPIIHLTPGQKLKFEAYARLGRGTEHAKWNSSNIAVLL 154
>gi|448431138|ref|ZP_21584966.1| DNA-directed RNA polymerase subunit D [Halorubrum tebenquichense
DSM 14210]
gi|445688285|gb|ELZ40550.1| DNA-directed RNA polymerase subunit D [Halorubrum tebenquichense
DSM 14210]
Length = 250
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 120/289 (41%), Gaps = 74/289 (25%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--- 78
A+ +R ++AN +RR MIA+VPT +ID V NSSV+ DE I RLGLIPLT+
Sbjct: 18 ARVLIRGLTPALANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLTTPLD 77
Query: 79 ------ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSV 132
E +++ A GD +C SD ++V +
Sbjct: 78 DFEVGDEVTLALDVEGPATAYSGDIEC--------------SDPLVEVADDN-------- 115
Query: 133 VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEP 192
VP I++L+ GQ L A A GK+HAK +V + +
Sbjct: 116 VP-------------------IIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYRHLQ 156
Query: 193 EIHINEDLMESLSLEEKQSWVESSPTKVFDID-PNT--GQVYVVDAEAYTYDDEVIKKAE 249
+ + D E FD D PN G + D E DD +E
Sbjct: 157 RVTVEGDRGE------------------FDDDEPNILRGVIETPDGEIELTDDFDNDLSE 198
Query: 250 AM-GKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
GK VE +F+F +E+ G+ +L+L AI+ ++++ D ++
Sbjct: 199 RFPGKEVAVEDVPG--AFVFHIETDGSFDVEELLLRAIDTIEERADELQ 245
>gi|448474335|ref|ZP_21602194.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
gi|445817642|gb|EMA67511.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
Length = 250
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 52/278 (18%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+ +R + AN +RR MIA+VPT +ID V NSSV+ DE I RLGLIPLT+
Sbjct: 18 ARVLIRGLTPAFANGIRRAMIADVPTFSIDTVNFVENSSVMFDEMIGLRLGLIPLTTPL- 76
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
D + D E L T S D+ S+D V D
Sbjct: 77 ------DDFEIGD----------EVTLALDVEGPAT--AYSGDIESADPLVEVAD----- 113
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ I++L+ GQ L A A GK+HAK +V + + + + DL
Sbjct: 114 --------DNVPIIELKEGQRLEFEATAVLDSGKEHAKHQGGVSVGYRHLQRVTVEGDLG 165
Query: 202 ESLSLEEKQSWVESSPTKVFD-IDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL-VEI 259
E + E P + I+ G++ + D +D+++ +K PG V +
Sbjct: 166 E---------FDEDEPRILRGVIETPEGEIVLTDE----FDNDLSEKF-----PGKEVSV 207
Query: 260 YAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+F+F +E+ G+ +L+L AI+ ++++ D ++
Sbjct: 208 EDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQ 245
>gi|289580107|ref|YP_003478573.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|448281346|ref|ZP_21472652.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
gi|289529660|gb|ADD04011.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|445578768|gb|ELY33168.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
Length = 249
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 122/284 (42%), Gaps = 62/284 (21%)
Query: 15 RELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLI 74
RE +D A+F ++ + AN +RR M+A+VPT+AID V NSSV+ DE +A RLGL+
Sbjct: 12 REERD--ARFLVQGITPAFANGIRRAMLADVPTMAIDTVRFVENSSVMFDEQLALRLGLV 69
Query: 75 PLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVP 134
PLT+ F D S++ A + S DL SSD V P
Sbjct: 70 PLTTPPVGE--FVEDDTVT--------LSIDVEGPATAY--------SGDLVSSDDLVQP 111
Query: 135 VDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEI 194
D + I+ L+ GQ L A A GKDHAK V + + +
Sbjct: 112 AD-------------ENVPIIDLKDGQRLEAEADAVLDRGKDHAKHQGGVAVGYRHLQRV 158
Query: 195 HINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE----- 249
EDL E F+ DP+ V V E D E++ +E
Sbjct: 159 AAVEDLPE------------------FE-DPDRRIVRGVIEE----DGELVPTSEFDHDL 195
Query: 250 AMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
+ PG V + +SF+F VE+ G+ +LV A + ++ +
Sbjct: 196 SNRYPGKEVTLEDVPNSFVFHVETDGSFSVEELVTRAADTIESR 239
>gi|240278194|gb|EER41701.1| RNA polymerase II subunit 3 [Ajellomyces capsulatus H143]
Length = 333
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 30/147 (20%)
Query: 148 QQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLSLE 207
+ +G +I KLRRGQE+++ IA+KGI K+HAKW+P A V F Y+P H N L+
Sbjct: 4 EGKGPVICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDP--HNN--------LK 53
Query: 208 EKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEIY-AKEDSF 266
W E P K + I N + E +P + Y A+ +F
Sbjct: 54 HVDYWYEEDPIKEWPISANA-------------------EWETSAQPDMPFDYDAQPSTF 94
Query: 267 IFTVESTGAIKASQLVLNAIEVLKQKL 293
VES G ++ +V I VL++KL
Sbjct: 95 YIDVESIGNLEPDAIVQQGITVLQRKL 121
>gi|304274364|gb|ADM18929.1| putative DNA-directed RNA polymerase III [Sporidiobolus johnsonii]
Length = 171
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 7/109 (6%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
S++ V + +L +F+L DAS+ANA+RR++IAEVPT+AI+ V + N+S++ D
Sbjct: 13 SFRSHLNVAVNKLSAAAIEFDLVGVDASVANAIRRIVIAEVPTVAIETVYVWNNTSIIQD 72
Query: 65 EFIAHRLGLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC 112
E +A RLGLIPL + R + ++ + D + + +V F L A+C
Sbjct: 73 EVLAQRLGLIPLAIDPRKLELKKAAD------EAPTDLNTVVFGLVARC 115
>gi|409722495|ref|ZP_11269943.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|448724486|ref|ZP_21706993.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|445785803|gb|EMA36589.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
Length = 249
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 61/282 (21%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--- 78
A+F +R + AN +RR M+A+VPT++ID V + NSSV+ DE I HRLG++PL++
Sbjct: 18 ARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVIENSSVMFDEQIGHRLGMVPLSAPPD 77
Query: 79 --ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVD 136
E S+ + D + S DL S+D V P
Sbjct: 78 EFEVGESVTLALDVSGPE------------------------TAYSGDLQSADSMVEPA- 112
Query: 137 FVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHI 196
++ + I+ L+ Q L + A A GK HAK V + + + +
Sbjct: 113 ------------EQNVPIIDLKEDQRLEVEAEAVLDSGKTHAKHQGGVAVGYRHLQHVEV 160
Query: 197 NEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL 256
D E + + P + + + G+ +V E + D + + PG
Sbjct: 161 AGDADE---------FADEEPNILRGVIEDDGE--LVPTEEFGSD--LTNR-----YPGK 202
Query: 257 -VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+++ ++F+F VE+ G++ +LVL A++ L + + +R
Sbjct: 203 ELDVTDVPNAFVFHVETDGSMSVEELVLAAVDSLGDRANELR 244
>gi|336121979|ref|YP_004576754.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
gi|334856500|gb|AEH06976.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
Length = 197
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 74/167 (44%), Gaps = 43/167 (25%)
Query: 23 KFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
KF L+ S ++ALRR+MI+E PT AI+ V N+S + DE IAHRLGLIP+ +
Sbjct: 17 KFNLK-APLSFSSALRRIMISETPTYAIENVYFYENTSSMYDELIAHRLGLIPIKGKPV- 74
Query: 83 SMRFSRD---CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVD 139
S D A +G C V S DL S VV
Sbjct: 75 ----SNDEVIIFALIKEGPC-------------------VVYSGDLESETGEVV------ 105
Query: 140 PAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 186
+ I IVKL+ GQ+L L A G GK HAKW P V
Sbjct: 106 ---------FKHIPIVKLKEGQKLELECEALVGTGKTHAKWQPCNAV 143
>gi|408404989|ref|YP_006862972.1| DNA-directed RNA polymerase subunit D, partial [Candidatus
Nitrososphaera gargensis Ga9.2]
gi|408365585|gb|AFU59315.1| DNA-directed RNA polymerase subunit D [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 163
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 65/125 (52%), Gaps = 20/125 (16%)
Query: 62 LNDEFIAHRLGLIPLTSERAMSMRF--SRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD 119
++DE +AHRLGLIPL ++ RF +CD C C C V L A+ S++TL
Sbjct: 1 MHDEAVAHRLGLIPLRTDPG---RFVMPHECD-CKSTLGCSKCRVLLVLDAEA-SEKTLV 55
Query: 120 VTSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
VTS +L S D V PV + I I+ L Q+L+ A AR G GKDHAK
Sbjct: 56 VTSGELVSEDEMVKPV-------------SKDIPIIVLAPNQKLKFEAYARLGTGKDHAK 102
Query: 180 WSPAA 184
W P +
Sbjct: 103 WQPTS 107
>gi|448378226|ref|ZP_21560700.1| DNA-directed RNA polymerase subunit D [Halovivax asiaticus JCM
14624]
gi|445654208|gb|ELZ07062.1| DNA-directed RNA polymerase subunit D [Halovivax asiaticus JCM
14624]
Length = 250
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 120/290 (41%), Gaps = 69/290 (23%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+ +R + AN +RR M+A+VPT+AID V NSSV+ DE + RLGL+PLT+
Sbjct: 17 ARILVRGITPAFANGIRRAMVADVPTLAIDTVRFIENSSVMFDEQLGLRLGLVPLTTPTP 76
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
GD S++ A + S DL SS+ D V PA
Sbjct: 77 EEF----------GDDDVVTLSIDVEGPATAY--------SGDLVSSEP-----DLVKPA 113
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ I++L+ Q L A A GK+HAK V + + + ++ DL
Sbjct: 114 -------DENVPIIQLKDDQRLEAEAEAVYDHGKNHAKHQGGVAVGYRHLQRVTVDGDLP 166
Query: 202 ESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMG 252
E EE++S + E PT F D E Y D ++
Sbjct: 167 E---FEEEESQIVRGVIEDDGELIPTSEFGHDLT---------ERYPGKDVTVEDV---- 210
Query: 253 KPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKL----DAVRL 298
++F+F VE+ G+ +LV A++ + + DAV+L
Sbjct: 211 ----------PNAFVFHVETDGSFAVEELVTRAVDSIDDRAAELEDAVQL 250
>gi|448465603|ref|ZP_21598869.1| DNA-directed RNA polymerase subunit D [Halorubrum kocurii JCM
14978]
gi|445814935|gb|EMA64883.1| DNA-directed RNA polymerase subunit D [Halorubrum kocurii JCM
14978]
Length = 250
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 122/277 (44%), Gaps = 50/277 (18%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+ +R + AN +RR MIA+VPT +ID V NSSV+ DE I RLGLIPL +
Sbjct: 18 ARVLIRGLTPAFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLKTPL- 76
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
D + D E L T S D+ SSD V D
Sbjct: 77 ------DDFEVGD----------EVTLALDVEGPAT--AYSGDIESSDPLVEVAD----- 113
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ I++L+ GQ L A A GK+HAK +V + + + + DL
Sbjct: 114 --------DNVPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYRHLQRVSVEGDLG 165
Query: 202 ESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL-VEIY 260
E ++ + + + D G++ + D +D+++ K+ PG V I
Sbjct: 166 E---FDDDEPRILRGVIETPD-----GEIELTDE----FDNDLSKRF-----PGKEVSIE 208
Query: 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+F+F +E+ G+ +L+L AI+ ++++ D ++
Sbjct: 209 DVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQ 245
>gi|424812604|ref|ZP_18237844.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
gi|339756826|gb|EGQ40409.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
Length = 188
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 40/167 (23%)
Query: 16 ELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIP 75
E D+ +L D + ++AN LRR M+ +VPT+A+ + + N S L DE +A+R+G IP
Sbjct: 7 EETDEVLHVQLEDANPAVANTLRRSMMTKVPTMAVQQLRVNQNQSGLFDEMLANRVGQIP 66
Query: 76 LTSERAMSMRFSRD---CDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSV 132
LT + F D A D +G+ VT++DL + ++ V
Sbjct: 67 LT----IPEGFDEDDTAVLALDREGETR-------------------VTAEDLSAGNYDV 103
Query: 133 VPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAK 179
PV+ D+T IVKL+ GQ+L+ A A G G +HAK
Sbjct: 104 TPVN-------DTT-------IVKLKEGQDLKFEADAELGYGTEHAK 136
>gi|448425439|ref|ZP_21582769.1| DNA-directed RNA polymerase subunit D [Halorubrum terrestre JCM
10247]
gi|448453316|ref|ZP_21593759.1| DNA-directed RNA polymerase subunit D [Halorubrum litoreum JCM
13561]
gi|448485426|ref|ZP_21606651.1| DNA-directed RNA polymerase subunit D [Halorubrum arcis JCM 13916]
gi|448504669|ref|ZP_21614010.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
9100]
gi|448519096|ref|ZP_21617872.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
10118]
gi|445680510|gb|ELZ32953.1| DNA-directed RNA polymerase subunit D [Halorubrum terrestre JCM
10247]
gi|445701879|gb|ELZ53851.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
9100]
gi|445704112|gb|ELZ56030.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
10118]
gi|445807636|gb|EMA57719.1| DNA-directed RNA polymerase subunit D [Halorubrum litoreum JCM
13561]
gi|445818080|gb|EMA67947.1| DNA-directed RNA polymerase subunit D [Halorubrum arcis JCM 13916]
Length = 250
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 52/288 (18%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D A+ +R + AN +RR MIA+VPT +ID V NSSV+ DE I RL
Sbjct: 8 VQYVERDDRSARVLIRGLTPAFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRL 67
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GL+PLT+ D + D E L T S D+ SSD
Sbjct: 68 GLVPLTTPL-------DDFELGD----------EVTLALDVEGPAT--AYSGDIESSDPL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V D + I++L+ GQ L A A GK+HAK +V + +
Sbjct: 109 VEVAD-------------ENVPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYRH- 154
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFD--IDPNTGQVYVVDAEAYTYDDEVIKKAE 249
++ +S+E + + + I+ G++ + D +D+++ ++
Sbjct: 155 ---------LQRVSVEGDRGEFDDDEPNILRGVIETPDGEIELTDE----FDNDLSERFP 201
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
GK VE +F+F +E+ G+ +L+L AI+ ++++ D ++
Sbjct: 202 --GKEVAVEDVPG--AFVFHIETDGSFDVEELLLRAIDSIEERADELQ 245
>gi|448712003|ref|ZP_21701546.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
gi|445791088|gb|EMA41737.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
Length = 249
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 116/281 (41%), Gaps = 68/281 (24%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+ +R AN +RR MIA+VPT+AID V NSSV+ DE +A RLGL+PLT+
Sbjct: 17 ARILVRGISPGFANGIRRAMIADVPTMAIDTVRFIENSSVMFDEQLALRLGLVPLTT--P 74
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
F D S++ A + S DL S + V P D
Sbjct: 75 PEDEFVEDDTVT--------LSIDVEGPATAY--------SGDLVSEEDLVQPAD----- 113
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ I++L+ Q L A A GKDHAK V + + + + +DL
Sbjct: 114 --------ENVPIIELKDDQRLEAEADAVLDYGKDHAKHQGGVAVGYRHLQRVEVVDDLP 165
Query: 202 ESLSLEEKQSWV---------ESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMG 252
E E+++S + E PT FD D +
Sbjct: 166 E---FEDEESQIIRGVIEDDGELVPTSEFDHDLSN------------------------R 198
Query: 253 KPG-LVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQK 292
PG VE+ ++F+F VE+ G++ +LV A + ++ +
Sbjct: 199 YPGKQVEVEDVPNAFVFHVETDGSLSVEELVTRAADSIEAR 239
>gi|448733727|ref|ZP_21715969.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
gi|445802247|gb|EMA52554.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
Length = 248
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 121/278 (43%), Gaps = 53/278 (19%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+F +R + AN +RR M+A+VPT++ID V + NSSV+ DE I HRLG+IPL +
Sbjct: 17 ARFLVRGITPAFANGIRRAMVADVPTLSIDTVRVVENSSVMFDEQIGHRLGMIPLNAP-- 74
Query: 82 MSMRFSRDCDACDGDGQCEFCSVE-FHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDP 140
EF S E L T S DL SSD V P
Sbjct: 75 ----------------PNEFESGEGVTLGIDVSGPDT--AYSGDLVSSDSVVEPA----- 111
Query: 141 AGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDL 200
+ + I+ L+ Q L A A GK HAK V + + ++ + D
Sbjct: 112 --------EDNVPIIDLKEDQRLEAEAEAVLDTGKTHAKHQGGVAVGYRHLQKVEVVGD- 162
Query: 201 MESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL-VEI 259
++ + + P + + ++ + + +D+++ + PG V +
Sbjct: 163 --------REEFADEEPNILRGVIEEDDELVLTE----EFDNDLTNR-----YPGKEVSV 205
Query: 260 YAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
++F+F VE+ G++ +LV A++ L+ + + ++
Sbjct: 206 EDVPNAFVFHVETDGSLTVEELVTAAVDSLETRANELK 243
>gi|167044152|gb|ABZ08834.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG5E24]
Length = 200
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 81/173 (46%), Gaps = 32/173 (18%)
Query: 14 IRELKDDYAKFELRDTDASM--ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
I+ L D K ++ S+ ANALRR+ + VP AID V+I NSSV+ DE +A L
Sbjct: 4 IQILTSDDKKISIKLIGISLHYANALRRICLNGVPIFAIDTVDIIENSSVIPDEGLALTL 63
Query: 72 GLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
G+IPL +E SR D + ++ T VTS +L S D
Sbjct: 64 GMIPLKTELNGFDESNSRVILVLDSEA----------------AETTKIVTSAELESKDQ 107
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
V P+ + I IV L GQ ++L A AR G G +HAKW+ A
Sbjct: 108 VVKPIS-------------KQIPIVHLAPGQRIKLEAYARLGRGTEHAKWNSA 147
>gi|290559364|gb|EFD92697.1| RNA polymerase insert [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 247
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 46/287 (16%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV++ E K + K L +MANA+RR +I V T+AID V I N+S + DE +A R
Sbjct: 2 KVELLEEKTE-TKLLLNGCSVAMANAIRRAIINGVYTLAIDDVTIYKNTSSMFDEVLAAR 60
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
LGLIP+ + + G G+ F L+ K + V + DL SSD
Sbjct: 61 LGLIPIKTPIEVK-----------GKGK-------FLLKLKEMGPKA--VHASDLVSSDK 100
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMY 190
VVP ++I+ L+ G+ L L A G G H K++PA V + +
Sbjct: 101 DVVP-------------AIPEMLIINLKDGESLELEAETTWGNGAIHTKFTPAH-VYYHF 146
Query: 191 EPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA-E 249
P+I I S++ P + D GQ + ++ + ++ KA E
Sbjct: 147 YPKITIPNS-----SVKGAAKIASLCPVDILD-----GQKDSLSVKSGKLSECILCKACE 196
Query: 250 AMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
++ I +++D +F +ES G + + AI L++++ +
Sbjct: 197 DYAGSDVISISSEKDKIVFGIESWGQLSVKDIFNEAISTLEEEVKEI 243
>gi|167044506|gb|ABZ09181.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG6J21]
Length = 200
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 81/173 (46%), Gaps = 32/173 (18%)
Query: 14 IRELKDDYAKFELRDTDASM--ANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
I+ L D K ++ S+ ANALRR+ + VP AID V+I NSSV+ DE +A L
Sbjct: 4 IQILTSDDKKISIKLIGISLHYANALRRICLNGVPIFAIDTVDIIENSSVIPDEGLALTL 63
Query: 72 GLIPLTSE-RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDH 130
G+IPL +E SR D + ++ T VTS +L S D
Sbjct: 64 GMIPLKTELNGFDESNSRVILVLDSEA----------------AETTKIVTSAELESKDQ 107
Query: 131 SVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 183
V P+ + I IV L GQ ++L A AR G G +HAKW+ A
Sbjct: 108 VVKPIS-------------KQIPIVHLAPGQRIKLEAYARLGRGTEHAKWNSA 147
>gi|448534354|ref|ZP_21621682.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
gi|445704836|gb|ELZ56743.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
Length = 250
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 52/278 (18%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+ +R ++AN +RR MIA+VPT +ID V NSSV+ DE I RLGLIPLT+
Sbjct: 18 ARVLIRGLTPALANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRLGLIPLTTPL- 76
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
D + D E L T S D+ SSD V D
Sbjct: 77 ------DDFEVGD----------EVTLALDVEGPAT--AYSGDIESSDPLVEVAD----- 113
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ I++L+ GQ L A A GK+HAK +V + + +
Sbjct: 114 --------ENVPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYRH----------L 155
Query: 202 ESLSLEEKQSWVESSPTKVFD--IDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEI 259
+ +++E + + + I+ G++ + D +D+++ ++ GK VE
Sbjct: 156 QRVTVEGDRGEFDDDEPNILRGVIETPDGEIELTDE----FDNDLSERFP--GKEVAVED 209
Query: 260 YAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+F+F +E+ G+ +L+L AI+ ++++ D ++
Sbjct: 210 VPG--AFVFHIETDGSFDVEELLLRAIDSIEERADELQ 245
>gi|448440158|ref|ZP_21588406.1| DNA-directed RNA polymerase subunit D [Halorubrum saccharovorum DSM
1137]
gi|445690675|gb|ELZ42885.1| DNA-directed RNA polymerase subunit D [Halorubrum saccharovorum DSM
1137]
Length = 250
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 68/296 (22%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D A+ +R + AN +RR MIA+VPT +ID V NSSV+ DE I RL
Sbjct: 8 VQYVERDDRSARVLIRGLTPAFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRL 67
Query: 72 GLIPLTS---------ERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTS 122
GL+PLT+ E +++ A GD +C +D ++V
Sbjct: 68 GLVPLTTPLDDFEIGDEVTLALDVEGPATAYSGDIEC--------------ADPLVEVAD 113
Query: 123 KDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182
+ I I++L+ GQ L A A GK+HAK
Sbjct: 114 DN---------------------------IPIIELKEGQRLEFEADAVLDTGKEHAKHQG 146
Query: 183 AATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDD 242
+V + + + + DL E ++ + + + D G + + D +D+
Sbjct: 147 GVSVGYRHLQRVTVEGDLGE---FDDDEPRILRGVIETPD-----GDIELTDE----FDN 194
Query: 243 EVIKKAEAMGKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
++ ++ PG V + +F+F +E+ G+ +L+L AI+ ++++ D ++
Sbjct: 195 DLSERF-----PGKEVSVEDVPGAFVFHIETDGSFDVEELLLRAIDSIEERADELQ 245
>gi|297599856|ref|NP_001047973.2| Os02g0723600 [Oryza sativa Japonica Group]
gi|45736002|dbj|BAD13030.1| putative RNA polymerase subunit [Oryza sativa Japonica Group]
gi|222623582|gb|EEE57714.1| hypothetical protein OsJ_08197 [Oryza sativa Japonica Group]
gi|255671218|dbj|BAF09887.2| Os02g0723600 [Oryza sativa Japonica Group]
Length = 300
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 124/295 (42%), Gaps = 79/295 (26%)
Query: 11 KVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHR 70
KV+I L +D +F++ DAS+ANA RR++IAE+PT+AI+ V + N+SV+ DE ++HR
Sbjct: 71 KVEISRLTEDDMEFDMIGIDASIANAFRRILIAELPTMAIEKVLMVDNTSVIADEVLSHR 130
Query: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQT-LDVTSKDL-YSS 128
LGLIPL ++ S + D E ++ + L C L V S DL +
Sbjct: 131 LGLIPLDADPRHFEYMS------ENDVPNERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 184
Query: 129 DHSVVPVDFVDPA-------GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 181
+ S +P+ PA Y S Q + I+ K G + + IAR G G+
Sbjct: 185 EGSRLPL--ASPAQSRYKQKTYTSFSQSQKDILEK-PLGVKFKDITIARLGPGQ------ 235
Query: 182 PAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYD 241
V F E I D E L V+ P VFDI
Sbjct: 236 ----VVFRKE----IKGDNAEKL--------VKKCPVNVFDI------------------ 261
Query: 242 DEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
ED T+ESTG + L A+ +L++K + V
Sbjct: 262 ---------------------EDLGNVTIESTGGLPPEALFTEAVRILEEKCERV 295
>gi|448499366|ref|ZP_21611293.1| DNA-directed RNA polymerase subunit D [Halorubrum coriense DSM
10284]
gi|445697321|gb|ELZ49386.1| DNA-directed RNA polymerase subunit D [Halorubrum coriense DSM
10284]
Length = 250
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 122/278 (43%), Gaps = 52/278 (18%)
Query: 22 AKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 81
A+ +R + AN +RR MIA+VPT +ID V+ NSSV+ DE I RLGL+PLT+
Sbjct: 18 ARVLIRGLTPAFANGIRRAMIADVPTFSIDTVQFVENSSVMFDEMIGLRLGLVPLTTPL- 76
Query: 82 MSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHSVVPVDFVDPA 141
D + D E L T S D+ SSD V D
Sbjct: 77 ------DDFEIGD----------EVTLALDVEGPAT--AYSGDIESSDPLVEVAD----- 113
Query: 142 GYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLM 201
+ I++L+ GQ L A A GK+HAK +V + + +
Sbjct: 114 --------ENVPIIELKEGQRLEFEATAVLDTGKEHAKHQGGVSVGYRH----------L 155
Query: 202 ESLSLEEKQSWVESSPTKVFD--IDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGLVEI 259
+ +S+E + + + I+ G V + D +D+++ ++ GK VE
Sbjct: 156 QRVSVEGDRGEFDDDEPNILRGVIETPDGDVELTDE----FDNDLSERFP--GKEVAVED 209
Query: 260 YAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
+F+F +E+ G+ +L+L AI ++++ D ++
Sbjct: 210 VPG--AFVFHIETDGSFSVEELLLRAIGSIEERADELQ 245
>gi|255071753|ref|XP_002499551.1| predicted protein [Micromonas sp. RCC299]
gi|226514813|gb|ACO60809.1| predicted protein [Micromonas sp. RCC299]
Length = 394
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 6/124 (4%)
Query: 5 SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLND 64
S++ K++I + + FE++ ++ANA RR++IAEVPT+AI+ V + N+SV+ D
Sbjct: 47 SFRENFKMEITHMDAERVVFEMQGISPAIANAFRRILIAEVPTMAIEKVYMVNNTSVIQD 106
Query: 65 EFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124
E AHRLGLIP+ RA F +G+ E ++ F + +C+ ++T D +
Sbjct: 107 EVFAHRLGLIPI---RADPRLFEY---KAEGETYNERNTIVFKMNVRCYREKTDDGSKGP 160
Query: 125 LYSS 128
L +S
Sbjct: 161 LMNS 164
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIH-INEDLMES----LSL 206
I++ K+ GQE+ L A KG GK+HAKWSP T + P++ I++D ++ + +
Sbjct: 236 ILLCKMVAGQEIELEAHCVKGQGKEHAKWSPVGTTWYRMVPKVEFIDKDYLDGEDADVFM 295
Query: 207 EEKQ---------SWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAMGKPGL- 256
+E W E K V VV+ Y E ++ G+PG
Sbjct: 296 KECNDFDPSHNCYGWFEKDGGK-----KGEKCVKVVNERGCDYCLERVRT--LCGEPGWD 348
Query: 257 --VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296
V + + FIFTVE+ G + L A++VL K +V
Sbjct: 349 EKVRVLKSKSHFIFTVETAGQLPPDVLFKEAVKVLASKCQSV 390
>gi|222480231|ref|YP_002566468.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
gi|222453133|gb|ACM57398.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
Length = 250
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 50/287 (17%)
Query: 12 VKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRL 71
V+ E D A+ +R + AN +RR MIA+VPT +ID V NSSV+ DE I RL
Sbjct: 8 VQYVERDDRSARVLIRGLTPAFANGIRRAMIADVPTFSIDTVRFVENSSVMFDEMIGLRL 67
Query: 72 GLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHS 131
GLIPL + D + D E L T S D+ S+D
Sbjct: 68 GLIPLKTPL-------DDFEVGD----------EVTLALDVEGPAT--AYSGDIESADPL 108
Query: 132 VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYE 191
V D I I++L+ GQ L A A GK+HAK +V + +
Sbjct: 109 VEVAD-------------DNIPIIELKEGQRLEFEADAVLDTGKEHAKHQGGVSVGYRHL 155
Query: 192 PEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEAM 251
+ + DL E ++ + + + D G++ + D +D+++ ++
Sbjct: 156 QRVSVEGDLGE---FDDDEPRILRGVIETPD-----GEIELTDE----FDNDLSERF--- 200
Query: 252 GKPGL-VEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297
PG V + +F+F +E+ G+ +L+L AI+ ++++ D ++
Sbjct: 201 --PGKEVSVEDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQ 245
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,793,939,445
Number of Sequences: 23463169
Number of extensions: 192879253
Number of successful extensions: 522131
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 518839
Number of HSP's gapped (non-prelim): 1363
length of query: 319
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 177
effective length of database: 9,027,425,369
effective search space: 1597854290313
effective search space used: 1597854290313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)