Query 020983
Match_columns 319
No_of_seqs 106 out of 1085
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 11:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfc2 d.181.1.1 (C:42-172) R 100.0 4.8E-41 3.5E-45 279.3 13.6 130 46-182 1-131 (131)
2 d1twfc1 d.74.3.1 (C:3-41,C:173 99.8 8.2E-23 6E-27 167.6 -1.4 52 8-59 2-53 (135)
3 d1bdfa2 d.181.1.1 (A:53-178) R 99.4 4.8E-13 3.5E-17 108.6 8.0 103 47-181 1-106 (126)
4 d1smya2 d.181.1.1 (A:50-172) R 99.3 1.2E-12 8.9E-17 105.8 5.3 102 47-178 1-104 (123)
5 d1bdfa1 d.74.3.1 (A:2-52,A:179 98.9 2.9E-09 2.1E-13 83.2 9.4 38 260-297 68-105 (105)
6 d1smya1 d.74.3.1 (A:1-49,A:173 98.4 2.8E-07 2E-11 71.7 7.8 38 260-297 66-103 (106)
7 d1bdfa1 d.74.3.1 (A:2-52,A:179 97.3 0.00013 9.2E-09 56.2 4.9 52 6-57 7-62 (105)
8 d1smya1 d.74.3.1 (A:1-49,A:173 95.7 0.0055 4E-07 46.7 5.0 49 9-57 8-60 (106)
9 d1xppa_ d.74.3.2 (A:) DNA-dire 95.6 0.0058 4.2E-07 45.9 4.4 37 10-47 3-39 (99)
10 d1twfk_ d.74.3.2 (K:) RPB11 {B 82.3 0.38 2.8E-05 36.3 2.9 33 11-43 18-52 (114)
11 d1twfk_ d.74.3.2 (K:) RPB11 {B 73.5 2 0.00015 32.1 4.7 36 262-297 67-102 (114)
12 d1jnrb_ d.58.1.5 (B:) Adenylyl 72.0 1.1 7.7E-05 35.0 2.8 39 211-249 19-57 (149)
13 d1xppa_ d.74.3.2 (A:) DNA-dire 69.8 2 0.00014 31.3 3.8 34 263-297 52-85 (99)
14 d3c7bb1 d.58.1.5 (B:197-261) D 56.5 3.4 0.00024 27.6 2.6 39 211-250 19-57 (65)
15 d1xera_ d.58.1.3 (A:) Ferredox 50.2 2.1 0.00015 31.1 0.7 74 177-259 19-100 (103)
16 d3c7ba1 d.58.1.5 (A:239-304) D 43.6 9.3 0.00068 25.6 3.2 36 210-248 22-57 (66)
17 d2qmwa2 d.58.18.3 (A:185-264) 40.8 12 0.00091 25.5 3.7 35 261-297 40-74 (80)
18 d1hfel2 d.58.1.5 (L:2-86) Fe-o 40.6 2.7 0.0002 29.4 -0.0 50 194-249 27-76 (85)
19 d1vjwa_ d.58.1.4 (A:) Ferredox 38.9 6.6 0.00048 25.0 1.8 40 209-249 13-52 (59)
20 d1f6fb2 b.1.2.1 (B:101-203) Pr 28.0 23 0.0016 24.0 3.4 33 152-185 67-99 (103)
21 d2v4ja1 d.58.1.5 (A:242-322) D 24.0 23 0.0017 24.5 2.6 36 210-248 37-72 (81)
No 1
>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=4.8e-41 Score=279.33 Aligned_cols=130 Identities=48% Similarity=0.763 Sum_probs=111.5
Q ss_pred CcceEEEEEEeeCcccccchhhhhhhcCCcceeccccceeeeccCCCCCCCCCCCCceEEEEEEEEeccCCCceeeccCe
Q 020983 46 PTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDL 125 (319)
Q Consensus 46 Pt~AId~V~I~~NtSvl~DE~laHRLgLIPi~~~~~~~~~~~~~c~~~~~~~~~~~c~v~~~L~v~~~~~~~~~V~s~Dl 125 (319)
||||||.|+|++|||+|+|||||||||||||.+.+.+.|.|.+.|.|.+ .|+.|++.|+|+|+|+++++..|||+||
T Consensus 1 PtlAid~V~I~~NTS~l~DE~iaHRLglIPi~~~~~~~~~~~~~~~~~~---~~~~~~v~~~L~v~~~~~~~~~V~s~Dl 77 (131)
T d1twfc2 1 PTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDL 77 (131)
T ss_dssp CEEEEEEEEEEEECSSSCHHHHHHHHHTSCEEETTGGGSCCTTTSSSSS---CCTTTEEEEEEEEECCSSSCEEEEGGGE
T ss_pred CeEEEEEEEEEECCcccchHHHHHhhcCceeeccChhhccccccccccC---CCCCceEEEEeEcccCCCCCceEEhhhe
Confidence 8999999999999999999999999999999998887899999988753 7999999999999999899999999999
Q ss_pred eeCCCc-eeeccccCCCCCCCCCCCCCeEEEEeCCCCEEEEEEEEEecccccccccCc
Q 020983 126 YSSDHS-VVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 182 (319)
Q Consensus 126 ~~~~~~-~~Pv~~~~~~~~~~~~~~~~I~I~kL~~gq~I~le~~a~kG~Gk~HAKw~P 182 (319)
+..+.. +.+...+... ...+++|+|+||+|||+|+|+|+|+||+||+||||||
T Consensus 78 ~~~~~~~~~~~~~~~~~----~~~~~~IlI~kL~pGQ~i~l~a~a~kG~Gk~HAK~sP 131 (131)
T d1twfc2 78 VIVSNLMGRNIGHPIIQ----DKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGP 131 (131)
T ss_dssp EECSCCTTCSEEEECCC----STTSCCSEEEEECTTCEEEEEEEEEEECTTTCGGGCC
T ss_pred EEcCCccccccCCcccc----CCcCCCCEEEEeCCCCEEEEEEEEEecccccCcEeCc
Confidence 874321 1111111101 3456789999999999999999999999999999998
No 2
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.83 E-value=8.2e-23 Score=167.64 Aligned_cols=52 Identities=40% Similarity=0.435 Sum_probs=48.2
Q ss_pred CCCcEEEEEecCceEEEEEEecCcchhhHHHHHHHhhcCcceEEEEEEeeCc
Q 020983 8 RFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNS 59 (319)
Q Consensus 8 ~~~~iei~~~~~~~~~f~l~g~~~s~aNaLRRillseVPt~AId~V~I~~Nt 59 (319)
+.|+|+|++.+++.++|.|+|+++|+||||||+|||||||++++.+..++|+
T Consensus 2 ~~P~i~i~~~~~~~~~F~l~~~d~s~ANalRRi~iaeV~t~v~feyDp~N~l 53 (135)
T d1twfc1 2 EGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIAAAIEFEYDPWNKL 53 (135)
T ss_dssp CSSBCCCSCCCSSEECCEEBSSCHHHHHHHHHHHHHCCEEEEEEEECSSTTS
T ss_pred CCCEEEEEEcCCCEEEEEEeCCCHHHHHHHHHHHHHhhhhheeeeecccccc
Confidence 4599999999999999999999999999999999999999999999777664
No 3
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=99.37 E-value=4.8e-13 Score=108.57 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=80.3
Q ss_pred cceEEEEEEeeCcccccchhhhhhhcCCcceeccccc--eeeeccCCCCCCCCCCCCceEEEEEEEEeccCCCceeeccC
Q 020983 47 TIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS--MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124 (319)
Q Consensus 47 t~AId~V~I~~NtSvl~DE~laHRLgLIPi~~~~~~~--~~~~~~c~~~~~~~~~~~c~v~~~L~v~~~~~~~~~V~s~D 124 (319)
+.||..|+|.+ +.|++..||++.+++.. +|++...-. ........++|+++ ||+.|||+|
T Consensus 1 G~AIt~vkI~G---------v~HEfsti~GV~EDV~~IiLNLK~i~~k-----~~~~~~~~~~l~~~----gp~~VtA~d 62 (126)
T d1bdfa2 1 GCAVTEVEIDG---------VLHEYSTKEGVQEDILEILLNLKGLAVR-----VQGKDEVILTLNKS----GIGPVTAAD 62 (126)
T ss_dssp CEEEEEEEETT---------CCSTTCCCTTBSSCHHHHHHHHHTCCEE-----CSSCSEEEEEEEEE----SSEEEEGGG
T ss_pred CCCEEEEEECC---------cccccccCCCchhhHHHHHHhcccceEE-----ecCCCceEEEEEec----CcccEEEec
Confidence 57999999998 89999999999999752 333332111 01233668889988 999999999
Q ss_pred eeeCCCceeeccccCCCCCCCCCCCCCeEEEEeC-CCCEEEEEEEEEecccccccccC
Q 020983 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLR-RGQELRLRAIARKGIGKDHAKWS 181 (319)
Q Consensus 125 l~~~~~~~~Pv~~~~~~~~~~~~~~~~I~I~kL~-~gq~I~le~~a~kG~Gk~HAKw~ 181 (319)
|... .+. +++||+..||+|. +|.+|+|++++.+|+||..|.++
T Consensus 63 i~~~------~~v--------eIvNpd~~Iatlt~~~~~l~mel~v~~GrGYv~ae~~ 106 (126)
T d1bdfa2 63 ITHD------GDV--------EIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTR 106 (126)
T ss_dssp BCCC------SSC--------EESCTTCEEEEECSTTCEEEEEEEEEECCSEECGGGT
T ss_pred ccCC------CCE--------EEeCCceEEEEEecCCceEEEEEEEeCCCCeeccccc
Confidence 9863 233 7899999999995 79999999999999999665543
No 4
>d1smya2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=99.28 E-value=1.2e-12 Score=105.76 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=78.5
Q ss_pred cceEEEEEEeeCcccccchhhhhhhcCCcceeccccc--eeeeccCCCCCCCCCCCCceEEEEEEEEeccCCCceeeccC
Q 020983 47 TIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS--MRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 124 (319)
Q Consensus 47 t~AId~V~I~~NtSvl~DE~laHRLgLIPi~~~~~~~--~~~~~~c~~~~~~~~~~~c~v~~~L~v~~~~~~~~~V~s~D 124 (319)
+.||..|+|.+ +.|++..||++.+++.. +|++...-.-. .....+++++|+++ ||+.|||+|
T Consensus 1 G~AIt~vkI~G---------v~HEfsti~GV~EDV~eIiLNLK~i~~~~~---~~~~~~~~~~l~~~----Gp~~VtA~D 64 (123)
T d1smya2 1 GTAVTSVYIED---------VLHEFSTIPGVKEDVVEIILNLKELVVRFL---NPSLQTVTLLLKAE----GPKEVKARD 64 (123)
T ss_dssp EEEEEEEEESS---------CCSTTCCCTTBSSCHHHHHHHHHHCCEEES---STTCSEEEEEEEEC----SSBCCBGGG
T ss_pred CcCEEEEEECC---------cccccccCCChhhhHHHHHHhhhhhheeec---ccccccEEEEEEec----CCCeEEeee
Confidence 57999999999 89999999999999752 23322110000 01123678888887 999999999
Q ss_pred eeeCCCceeeccccCCCCCCCCCCCCCeEEEEeCCCCEEEEEEEEEeccccccc
Q 020983 125 LYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHA 178 (319)
Q Consensus 125 l~~~~~~~~Pv~~~~~~~~~~~~~~~~I~I~kL~~gq~I~le~~a~kG~Gk~HA 178 (319)
|... .+. +++||+.+||+|.++.+|+|++++.+|+||..|
T Consensus 65 i~~~------~~v--------eIvNpd~~IaTl~~~~~l~mel~v~~GrGYv~a 104 (123)
T d1smya2 65 FLPV------ADV--------EIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPA 104 (123)
T ss_dssp SCCC------TTE--------EESCTTCBCCCBCTTCCEEEEEEEEEEESEECH
T ss_pred ecCC------CcE--------EEECCcEEEEEEcCCcEEEEEEEEcccccceEc
Confidence 9863 233 789999999999999999999999999998433
No 5
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha {Escherichia coli [TaxId: 562]}
Probab=98.90 E-value=2.9e-09 Score=83.20 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=35.1
Q ss_pred eeeCCEEEEEEEeCcccCHHHHHHHHHHHHHHHhcccc
Q 020983 260 YAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297 (319)
Q Consensus 260 ~~~~d~f~f~IET~Gsl~p~~il~~A~~iL~~kl~~l~ 297 (319)
.++.++++++|||||+++|++|+.+|+++|.++|..|.
T Consensus 68 ~td~d~L~lei~TnGsi~p~eA~~~Aa~il~~~~~~f~ 105 (105)
T d1bdfa1 68 RTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 105 (105)
T ss_dssp CSSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGGGGC
T ss_pred CCcceEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 36788999999999999999999999999999998773
No 6
>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus thermophilus [TaxId: 274]}
Probab=98.43 E-value=2.8e-07 Score=71.70 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=35.8
Q ss_pred eeeCCEEEEEEEeCcccCHHHHHHHHHHHHHHHhcccc
Q 020983 260 YAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297 (319)
Q Consensus 260 ~~~~d~f~f~IET~Gsl~p~~il~~A~~iL~~kl~~l~ 297 (319)
..+.++++++|||||+++|++|+.+|+++|.+++..|.
T Consensus 66 ~~d~dkL~LeI~TnGsi~P~eAl~~Aa~il~~h~~~f~ 103 (106)
T d1smya1 66 RTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFS 103 (106)
T ss_dssp CSCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999886
No 7
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha {Escherichia coli [TaxId: 562]}
Probab=97.28 E-value=0.00013 Score=56.17 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=44.8
Q ss_pred CCCCCcEEEEEecCceEEEEEE----ecCcchhhHHHHHHHhhcCcceEEEEEEee
Q 020983 6 YQRFPKVKIRELKDDYAKFELR----DTDASMANALRRVMIAEVPTIAIDLVEIEV 57 (319)
Q Consensus 6 ~~~~~~iei~~~~~~~~~f~l~----g~~~s~aNaLRRillseVPt~AId~V~I~~ 57 (319)
+.++..+.+...++.+++|.++ |++.+++|++||+++|++|..+.-.+.|++
T Consensus 7 il~P~~v~i~~~~~~~~k~~~eplErG~Gyt~gn~lr~~llSs~sPV~~V~y~Ve~ 62 (105)
T d1bdfa1 7 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPPVERIAYNVEA 62 (105)
T ss_dssp SCCCCEEEEEESSSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCSEEEEEEECCB
T ss_pred hcCCCEEEEEecCCceEEEEEEEccCCcccccccccchhhhhcccceeEEEEeeee
Confidence 4455557777788889999986 889999999999999999999999999987
No 8
>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus thermophilus [TaxId: 274]}
Probab=95.75 E-value=0.0055 Score=46.70 Aligned_cols=49 Identities=22% Similarity=0.497 Sum_probs=39.8
Q ss_pred CCcEEEEEecCceEEEEEE----ecCcchhhHHHHHHHhhcCcceEEEEEEee
Q 020983 9 FPKVKIRELKDDYAKFELR----DTDASMANALRRVMIAEVPTIAIDLVEIEV 57 (319)
Q Consensus 9 ~~~iei~~~~~~~~~f~l~----g~~~s~aNaLRRillseVPt~AId~V~I~~ 57 (319)
.|.+.+.+....+.+|..+ |++.+++|++||+++|++|..+.-...|++
T Consensus 8 ~p~~~~~~~~~~y~~~v~~p~erG~g~~~gn~l~~il~ss~~PV~kV~y~Ve~ 60 (106)
T d1smya1 8 APVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPPVRRVAFQVED 60 (106)
T ss_dssp CCCCEEEECSSSCEEEEEEEECTTHHHHHHHHHHHHHHHTCECEEEEEEEEEE
T ss_pred CceEEEeecCCceeEEEeeccCCCcccccccccceeehhcCChhhEEEEEecc
Confidence 4666777788889999986 888899999999999999976666666553
No 9
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=95.57 E-value=0.0058 Score=45.89 Aligned_cols=37 Identities=8% Similarity=0.230 Sum_probs=33.7
Q ss_pred CcEEEEEecCceEEEEEEecCcchhhHHHHHHHhhcCc
Q 020983 10 PKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPT 47 (319)
Q Consensus 10 ~~iei~~~~~~~~~f~l~g~~~s~aNaLRRillseVPt 47 (319)
.+++|++.++++++|.+.|-|.|++|+||..|+.. |.
T Consensus 3 ~~ikvi~~~~n~~~~~i~~EdHTlgn~L~~~L~~~-~~ 39 (99)
T d1xppa_ 3 SSLRVISKEKNSITVEMINYDNTLLRTLVEEILKD-DQ 39 (99)
T ss_dssp CEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTC-TT
T ss_pred ceEEEEecCCCEEEEEEeCCCchHHHHHHHHHhcC-CC
Confidence 57899999999999999999999999999999974 44
No 10
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=82.26 E-value=0.38 Score=36.33 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=27.1
Q ss_pred cEEEEE--ecCceEEEEEEecCcchhhHHHHHHHh
Q 020983 11 KVKIRE--LKDDYAKFELRDTDASMANALRRVMIA 43 (319)
Q Consensus 11 ~iei~~--~~~~~~~f~l~g~~~s~aNaLRRills 43 (319)
+|++.. ..++.+.|.+.|-|.++||+||..|+.
T Consensus 18 ki~i~~~~~~~n~~~~~i~~EdhTlGnlL~~~L~~ 52 (114)
T d1twfk_ 18 KLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLN 52 (114)
T ss_dssp SCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTT
T ss_pred eEEEEecCCCCceEEEEEeCCCchHHHHHHHHHhc
Confidence 344544 446899999999999999999999986
No 11
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=73.48 E-value=2 Score=32.08 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=33.0
Q ss_pred eCCEEEEEEEeCcccCHHHHHHHHHHHHHHHhcccc
Q 020983 262 KEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297 (319)
Q Consensus 262 ~~d~f~f~IET~Gsl~p~~il~~A~~iL~~kl~~l~ 297 (319)
-.++..|.|.|++..+|.+++..|++-|.+.++.|.
T Consensus 67 l~~~i~irI~t~~~~~p~~~l~~a~~~l~~~~~~l~ 102 (114)
T d1twfk_ 67 FFARFKLRIQTTEGYDPKDALKNACNSIINKLGALK 102 (114)
T ss_dssp TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999988876
No 12
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=71.98 E-value=1.1 Score=35.02 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=32.4
Q ss_pred hhhccCCCeeEEeCCCCCceeecCCccccchHHHHHHHh
Q 020983 211 SWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249 (319)
Q Consensus 211 ~~~~~cp~~v~~id~~~~~~~~~~~~~~~~~~e~~~~~~ 249 (319)
.+++.||.+.+.++..+.++...+...|..|..|...+.
T Consensus 19 ~C~~~CP~~ai~~~~~~~~~~~~d~~~C~~C~~C~~~CP 57 (149)
T d1jnrb_ 19 ACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCP 57 (149)
T ss_dssp HHHHHCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCT
T ss_pred hHHHhCCcccEEecCCCcEEEEeccccCCCCccccCcCc
Confidence 477889999999987666666678889999999999874
No 13
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=69.85 E-value=2 Score=31.25 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=30.7
Q ss_pred CCEEEEEEEeCcccCHHHHHHHHHHHHHHHhcccc
Q 020983 263 EDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297 (319)
Q Consensus 263 ~d~f~f~IET~Gsl~p~~il~~A~~iL~~kl~~l~ 297 (319)
.++..|.|.|+|. +|.+++..|++-|.+.++.|.
T Consensus 52 ~~~~~l~I~t~~~-~p~~~l~~a~~~li~~~~~l~ 85 (99)
T d1xppa_ 52 IDNPQIYVRVKSG-KPQSAIKRAVRKLSKLYEDLG 85 (99)
T ss_dssp TSCCEEEEEESSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999988 899999999999999998886
No 14
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=56.46 E-value=3.4 Score=27.59 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=31.1
Q ss_pred hhhccCCCeeEEeCCCCCceeecCCccccchHHHHHHHhh
Q 020983 211 SWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAEA 250 (319)
Q Consensus 211 ~~~~~cp~~v~~id~~~~~~~~~~~~~~~~~~e~~~~~~~ 250 (319)
.++..||.+.+..+..++.+.+ +..+|..|..|...+..
T Consensus 19 ~Cv~~CP~~Ai~~~~~~g~v~i-d~~~CigCg~C~~aCP~ 57 (65)
T d3c7bb1 19 STVAACPTGALKPDMKNKTIKV-DVEKCMYCGNCYTMCPG 57 (65)
T ss_dssp HHHHTCTTCCEEEETTTTEEEE-CTTTCCCCCHHHHHCTT
T ss_pred HHHHhCcCCCccccccCCcEEE-eCCcCcccChhhhhCCc
Confidence 4778999999988766665544 67899999999988754
No 15
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}
Probab=50.23 E-value=2.1 Score=31.06 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=44.4
Q ss_pred ccccCccceeecc--cccccccchhhhhhhhHHhhhhhhccCCCeeEEeCCC------CCceeecCCccccchHHHHHHH
Q 020983 177 HAKWSPAATVTFM--YEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPN------TGQVYVVDAEAYTYDDEVIKKA 248 (319)
Q Consensus 177 HAKw~Pvs~~~y~--~~p~i~i~~~~~~~~~~~~~~~~~~~cp~~v~~id~~------~~~~~~~~~~~~~~~~e~~~~~ 248 (319)
|..|.|+..-... ....+.+|.+.+- .+..+...||.+++.+... .......+...|..|..|...+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~iD~~~Ci-----~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~C 93 (103)
T d1xera_ 19 HKVYGPVEPPKVLGIHGTIVGVDFDLCI-----ADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVC 93 (103)
T ss_dssp EEEESCCBTTTBCCEECSSEEEETTTCC-----CCCHHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHC
T ss_pred ccccCCCCCcccccccccEEEECHHHCc-----CcCcccccCcccceeeeccccccccccceeEeccccCCCcChHHhhc
Confidence 6677776432111 1223455665552 3557888999998865321 1123345667899999999887
Q ss_pred hhcCCCCcEEE
Q 020983 249 EAMGKPGLVEI 259 (319)
Q Consensus 249 ~~~~~~~~i~v 259 (319)
. .++|++
T Consensus 94 P----~~AI~~ 100 (103)
T d1xera_ 94 P----VAAIDV 100 (103)
T ss_dssp T----TCCEEE
T ss_pred C----ccceEe
Confidence 4 356655
No 16
>d3c7ba1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=43.56 E-value=9.3 Score=25.62 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=27.5
Q ss_pred hhhhccCCCeeEEeCCCCCceeecCCccccchHHHHHHH
Q 020983 210 QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248 (319)
Q Consensus 210 ~~~~~~cp~~v~~id~~~~~~~~~~~~~~~~~~e~~~~~ 248 (319)
.+.+..||.+.+..|. +.+.+.+ ..|..|..|++.-
T Consensus 22 ~eVv~~CPT~cm~~dg--~~L~Idn-~~CvRCMHCIN~M 57 (66)
T d3c7ba1 22 NEVVKLCPTGAIKWDG--KELTIDN-RECVRCMHCINKM 57 (66)
T ss_dssp HHTGGGCTTCCEEECS--SCEEECT-TTCCCCCHHHHHC
T ss_pred hhhhccCccccccccC--CEEEEcC-cccCccccchhcC
Confidence 3567789999999975 3565544 5899999999864
No 17
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=40.84 E-value=12 Score=25.53 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=28.9
Q ss_pred eeCCEEEEEEEeCcccCHHHHHHHHHHHHHHHhcccc
Q 020983 261 AKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 297 (319)
Q Consensus 261 ~~~d~f~f~IET~Gsl~p~~il~~A~~iL~~kl~~l~ 297 (319)
..+.+|.|.||-.|.... .+..|++.|+.+...++
T Consensus 40 ~~~~~Y~F~id~~g~~~~--~~~~~l~~L~~~~~~~k 74 (80)
T d2qmwa2 40 TQLGMYRFFVQADSAITT--DIKKVIAILETLDFKVE 74 (80)
T ss_dssp SSTTCEEEEEEESCCSCH--HHHHHHHHHHHTTEEEE
T ss_pred CCCceEEEEEEEecCCcH--HHHHHHHHHHHhcCcEE
Confidence 345689999999998764 48999999999887776
No 18
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=40.58 E-value=2.7 Score=29.36 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=33.7
Q ss_pred cccchhhhhhhhHHhhhhhhccCCCeeEEeCCCCCceeecCCccccchHHHHHHHh
Q 020983 194 IHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249 (319)
Q Consensus 194 i~i~~~~~~~~~~~~~~~~~~~cp~~v~~id~~~~~~~~~~~~~~~~~~e~~~~~~ 249 (319)
+.||.+.+ -.+..++..||.+.+..+..+... +.+...|..|..|...+.
T Consensus 27 ~~id~~~C-----i~C~~Cv~~Cp~~ai~~~~~~~~~-~~~~~~C~~Cg~C~~~CP 76 (85)
T d1hfel2 27 VQIDEAKC-----IGCDTCSQYCPTAAIFGEMGEPHS-IPHIEACINCGQCLTHCP 76 (85)
T ss_dssp EEECTTTC-----CCCCHHHHHCTTCCCBCCTTSCCB-CCCGGGCCCCCTTGGGCT
T ss_pred EEEcHHHC-----CCchhHHHHCCccCEEeecCCceE-eCChhHCCCcChhhhhCC
Confidence 44555544 235568889999988776544333 346678999999987763
No 19
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}
Probab=38.91 E-value=6.6 Score=24.99 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=24.7
Q ss_pred hhhhhccCCCeeEEeCCCCCceeecCCccccchHHHHHHHh
Q 020983 209 KQSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKAE 249 (319)
Q Consensus 209 ~~~~~~~cp~~v~~id~~~~~~~~~~~~~~~~~~e~~~~~~ 249 (319)
...+...||. +|.++..+......+...|..|..|...++
T Consensus 13 Cg~C~~~cP~-~~~~~~~g~~~~~~~~~~c~~c~~c~~~CP 52 (59)
T d1vjwa_ 13 CGVCENLCPD-VFQLGDDGKAKVLQPETDLPCAKDAADSCP 52 (59)
T ss_dssp CCHHHHHCTT-TEEECTTSSEEESCSBCCCTHHHHHHHHCT
T ss_pred CCCChHhCch-heEEccceeeEEecChHHCcCcCcccCccC
Confidence 3467778995 555654433333344456788888888764
No 20
>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.97 E-value=23 Score=24.02 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=26.7
Q ss_pred eEEEEeCCCCEEEEEEEEEecccccccccCccce
Q 020983 152 IIIVKLRRGQELRLRAIARKGIGKDHAKWSPAAT 185 (319)
Q Consensus 152 I~I~kL~~gq~I~le~~a~kG~Gk~HAKw~Pvs~ 185 (319)
..|..|.+|.+-.+++.|+.+-|. =+.||+...
T Consensus 67 ~~i~~L~p~t~Y~~rVra~~~~G~-wS~wS~~~~ 99 (103)
T d1f6fb2 67 FKVFDLYPGQKYLVQTRCKPDHGY-WSRWSQESS 99 (103)
T ss_dssp EEECCCCTTCEEEEEEEEEESSSC-CCCCCCCEE
T ss_pred EEeCCCCcceEEEEEEEEEeCCCC-CCCCcCcee
Confidence 677889999999999999998883 377886543
No 21
>d2v4ja1 d.58.1.5 (A:242-322) DsrA insert domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=24.04 E-value=23 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=27.6
Q ss_pred hhhhccCCCeeEEeCCCCCceeecCCccccchHHHHHHH
Q 020983 210 QSWVESSPTKVFDIDPNTGQVYVVDAEAYTYDDEVIKKA 248 (319)
Q Consensus 210 ~~~~~~cp~~v~~id~~~~~~~~~~~~~~~~~~e~~~~~ 248 (319)
++.+..||.+....|. +++.+. ...|+.|..|++.-
T Consensus 37 ~eVv~~CPT~cm~~d~--~~L~Id-n~~C~RCMHCINvM 72 (81)
T d2v4ja1 37 AEVVNRCPSKCMKWDG--SKLSID-NKECVRCMHCINTM 72 (81)
T ss_dssp HHTGGGCTTCCEEECS--SCEEEC-GGGCCCCSHHHHHC
T ss_pred hchhccCCHhhccccC--CeeEEe-CcccccCcCchhhC
Confidence 4567889999999975 356554 46899999999864
Done!