BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020984
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZC|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZD|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
pdb|3LZD|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
Length = 378
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 83 PLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN 142
P + +++R+ + KA DA GV+V L ++ +L+ K G++A +VM N
Sbjct: 247 PERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVN 306
Query: 143 PAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFG 186
KL FP + ++ V+C + L D + PV+TP E + G
Sbjct: 307 YHKLEGFP-FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLG 349
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 145 KLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMS 204
K+A+F C I + +++AP I ++ +G+ W V+ + L
Sbjct: 161 KIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQP---YGKSVDWWAFGVLLYEMLAG 217
Query: 205 SSPVEGSDQAE 215
+P EG D+ E
Sbjct: 218 QAPFEGEDEDE 228
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 145 KLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMS 204
K+A+F C I + +++AP I ++ +G+ W V+ + L
Sbjct: 482 KIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQP---YGKSVDWWAFGVLLYEMLAG 538
Query: 205 SSPVEGSDQAE 215
+P EG D+ E
Sbjct: 539 QAPFEGEDEDE 549
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 68 RYDATEERLLTDVSQPLKILKRRYY--LVEKAKDANIIGVLVGTLG 111
RY++T RL TDVSQ +K L R Y ++ A+I + T G
Sbjct: 239 RYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRG 284
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 68 RYDATEERLLTDVSQPLKILKRRYY--LVEKAKDANIIGVLVGTLG 111
RY++T RL TDVSQ +K L R Y ++ A+I + T G
Sbjct: 239 RYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRG 284
>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
Length = 361
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 162 QTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVE 209
+T LL F+ P T + AFG +W A+V ++ ++ + E
Sbjct: 170 RTVLLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNXAE 217
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 145 KLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMS 204
K+A+F C + + +++AP I ++ +G+ W V+ + L
Sbjct: 160 KIADFGMCKEHMMDGVTTREFCGTPDYIAPEIIAYQP---YGKSVDWWAYGVLLYEMLAG 216
Query: 205 SSPVEGSDQAE 215
P +G D+ E
Sbjct: 217 QPPFDGEDEDE 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,228,553
Number of Sequences: 62578
Number of extensions: 358366
Number of successful extensions: 789
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 9
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)