Query 020984
Match_columns 319
No_of_seqs 182 out of 558
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lzd_A DPH2; diphthamide biosy 100.0 2.2E-49 7.7E-54 386.5 18.8 167 15-200 193-359 (378)
2 1byk_A Protein (trehalose oper 86.8 1.7 5.7E-05 37.5 7.3 77 100-177 2-84 (255)
3 3hs3_A Ribose operon repressor 84.4 2.5 8.6E-05 37.1 7.4 78 97-177 7-90 (277)
4 3ixl_A Amdase, arylmalonate de 80.0 6.3 0.00021 35.2 8.4 80 98-183 115-216 (240)
5 3kke_A LACI family transcripti 79.7 2.3 7.9E-05 37.9 5.4 65 98-163 13-83 (303)
6 3cs3_A Sugar-binding transcrip 79.3 4.4 0.00015 35.3 7.0 62 98-161 6-67 (277)
7 3jvd_A Transcriptional regulat 78.2 3.3 0.00011 37.7 6.0 74 98-177 62-141 (333)
8 3e61_A Putative transcriptiona 78.1 1.5 5.1E-05 38.2 3.5 61 98-159 6-72 (277)
9 3o74_A Fructose transport syst 78.1 3 0.0001 36.0 5.4 61 100-161 2-68 (272)
10 3egc_A Putative ribose operon 77.9 2.3 8E-05 37.3 4.8 79 97-176 5-91 (291)
11 3f6r_A Flavodoxin; FMN binding 76.4 4.9 0.00017 32.1 6.0 59 101-163 2-60 (148)
12 3gyb_A Transcriptional regulat 75.9 3.8 0.00013 35.6 5.6 62 98-162 3-70 (280)
13 3trh_A Phosphoribosylaminoimid 75.4 6.3 0.00021 34.1 6.6 77 97-176 3-88 (169)
14 3l6u_A ABC-type sugar transpor 74.6 2.8 9.7E-05 36.7 4.3 65 98-163 6-76 (293)
15 3brs_A Periplasmic binding pro 74.2 4.3 0.00015 35.4 5.4 66 98-163 3-77 (289)
16 3uug_A Multiple sugar-binding 73.7 4.1 0.00014 36.4 5.3 63 99-162 2-70 (330)
17 3fni_A Putative diflavin flavo 73.5 6.3 0.00021 32.7 6.0 62 100-163 4-67 (159)
18 5nul_A Flavodoxin; electron tr 73.4 6.5 0.00022 31.0 5.9 55 103-162 1-55 (138)
19 3miz_A Putative transcriptiona 72.5 4.6 0.00016 35.7 5.3 80 97-177 10-97 (301)
20 3hr4_A Nitric oxide synthase, 72.3 10 0.00034 33.8 7.4 73 83-161 22-95 (219)
21 3g1w_A Sugar ABC transporter; 72.2 4.3 0.00015 35.8 5.0 64 100-163 4-73 (305)
22 2fz5_A Flavodoxin; alpha/beta 71.7 14 0.00049 28.6 7.5 56 103-163 2-57 (137)
23 1f4p_A Flavodoxin; electron tr 71.1 7.8 0.00027 30.8 5.9 57 102-163 2-59 (147)
24 2xed_A Putative maleate isomer 70.8 17 0.00058 33.0 8.8 80 99-183 145-244 (273)
25 3hly_A Flavodoxin-like domain; 70.3 6.5 0.00022 32.5 5.4 60 102-163 2-62 (161)
26 3m9w_A D-xylose-binding peripl 69.3 11 0.00038 33.3 7.1 63 100-163 2-70 (313)
27 3tb6_A Arabinose metabolism tr 69.1 8 0.00027 33.6 6.0 60 101-161 16-81 (298)
28 3qk7_A Transcriptional regulat 68.7 3.7 0.00013 36.3 3.8 65 98-162 4-76 (294)
29 4grd_A N5-CAIR mutase, phospho 68.2 13 0.00044 32.3 6.9 65 98-165 10-81 (173)
30 2iks_A DNA-binding transcripti 67.5 14 0.00048 32.3 7.3 63 98-161 18-86 (293)
31 2dgd_A 223AA long hypothetical 66.6 26 0.00089 30.2 8.8 80 98-183 106-207 (223)
32 2fep_A Catabolite control prot 66.4 3.6 0.00012 36.3 3.1 64 96-160 12-81 (289)
33 3clk_A Transcription regulator 66.0 6.2 0.00021 34.6 4.6 64 98-161 6-75 (290)
34 3ors_A N5-carboxyaminoimidazol 65.8 16 0.00053 31.5 6.9 64 99-165 2-72 (163)
35 3lp6_A Phosphoribosylaminoimid 65.5 12 0.00042 32.5 6.2 74 100-176 7-89 (174)
36 1u11_A PURE (N5-carboxyaminoim 65.1 9.6 0.00033 33.4 5.5 68 95-165 16-90 (182)
37 3oow_A Phosphoribosylaminoimid 65.1 16 0.00056 31.4 6.9 73 101-176 6-87 (166)
38 3kuu_A Phosphoribosylaminoimid 64.7 16 0.00055 31.7 6.8 73 101-176 13-94 (174)
39 3l49_A ABC sugar (ribose) tran 63.8 9.9 0.00034 33.0 5.5 64 97-161 2-71 (291)
40 3jy6_A Transcriptional regulat 63.4 8.7 0.0003 33.3 5.0 64 98-162 5-74 (276)
41 3g85_A Transcriptional regulat 62.8 12 0.0004 32.6 5.8 65 97-161 8-78 (289)
42 3o1i_D Periplasmic protein TOR 62.8 8.5 0.00029 33.6 4.9 65 99-163 4-75 (304)
43 4b4k_A N5-carboxyaminoimidazol 61.5 19 0.00066 31.4 6.7 73 101-176 23-104 (181)
44 2l2q_A PTS system, cellobiose- 60.9 34 0.0012 26.5 7.7 73 105-182 8-88 (109)
45 3h5o_A Transcriptional regulat 59.4 21 0.00072 32.1 7.1 63 98-161 60-128 (339)
46 3k9c_A Transcriptional regulat 59.0 20 0.00068 31.3 6.7 64 98-162 10-77 (289)
47 3e3m_A Transcriptional regulat 58.1 8.5 0.00029 35.1 4.1 63 98-161 68-136 (355)
48 4fe7_A Xylose operon regulator 57.6 11 0.00038 35.4 4.9 60 96-157 21-82 (412)
49 3brq_A HTH-type transcriptiona 57.2 7.4 0.00025 33.8 3.5 62 99-161 18-87 (296)
50 3k4h_A Putative transcriptiona 57.0 11 0.00039 32.6 4.7 64 97-161 5-79 (292)
51 3gv0_A Transcriptional regulat 56.2 6.7 0.00023 34.4 3.0 63 97-160 5-75 (288)
52 1o4v_A Phosphoribosylaminoimid 55.9 30 0.001 30.2 7.0 63 100-165 13-82 (183)
53 2fn9_A Ribose ABC transporter, 55.6 11 0.00036 32.9 4.2 60 101-161 3-68 (290)
54 3c3k_A Alanine racemase; struc 54.9 20 0.00068 31.2 5.9 62 98-160 6-73 (285)
55 3rg8_A Phosphoribosylaminoimid 54.6 25 0.00086 30.0 6.2 73 101-176 3-85 (159)
56 3ctp_A Periplasmic binding pro 54.4 31 0.0011 30.8 7.2 62 98-161 58-125 (330)
57 2h0a_A TTHA0807, transcription 53.8 14 0.00049 31.7 4.7 75 102-177 1-83 (276)
58 1bvy_F Protein (cytochrome P45 53.5 25 0.00087 30.1 6.2 59 98-162 19-77 (191)
59 3gbv_A Putative LACI-family tr 52.9 29 0.001 30.0 6.6 66 97-162 5-80 (304)
60 2i0f_A 6,7-dimethyl-8-ribityll 52.6 19 0.00064 30.7 5.1 61 101-161 13-83 (157)
61 1jye_A Lactose operon represso 52.4 23 0.00079 32.1 6.1 62 98-159 59-126 (349)
62 2h3h_A Sugar ABC transporter, 51.9 15 0.00051 32.6 4.6 60 101-161 2-67 (313)
63 1gud_A ALBP, D-allose-binding 51.9 24 0.00081 30.8 5.9 61 100-160 1-68 (288)
64 2ark_A Flavodoxin; FMN, struct 51.3 21 0.00072 29.8 5.2 58 101-163 5-63 (188)
65 2ioy_A Periplasmic sugar-bindi 51.2 14 0.00046 32.3 4.2 59 101-160 2-66 (283)
66 3kjx_A Transcriptional regulat 51.2 28 0.00095 31.3 6.4 61 100-161 68-134 (344)
67 1dbq_A Purine repressor; trans 51.1 19 0.00066 31.1 5.1 63 98-161 5-73 (289)
68 3hcw_A Maltose operon transcri 51.1 7.5 0.00026 34.3 2.5 64 97-161 4-78 (295)
69 2dri_A D-ribose-binding protei 51.1 11 0.00037 32.7 3.5 59 101-160 2-66 (271)
70 3dbi_A Sugar-binding transcrip 50.9 23 0.00077 31.8 5.7 64 97-161 58-129 (338)
71 3bbl_A Regulatory protein of L 49.2 23 0.00078 30.8 5.4 62 99-161 3-74 (287)
72 1ykg_A SIR-FP, sulfite reducta 49.1 21 0.00072 29.4 4.8 57 101-162 10-66 (167)
73 1e2b_A Enzyme IIB-cellobiose; 49.0 33 0.0011 26.7 5.7 74 101-182 4-85 (106)
74 1tjy_A Sugar transport protein 49.0 14 0.00049 33.0 4.1 63 100-162 3-71 (316)
75 3ksm_A ABC-type sugar transpor 48.2 18 0.00062 30.9 4.4 60 102-161 2-69 (276)
76 1tvm_A PTS system, galactitol- 47.7 71 0.0024 24.9 7.5 66 101-177 22-90 (113)
77 3d8u_A PURR transcriptional re 47.7 14 0.00049 31.6 3.7 61 100-161 3-69 (275)
78 1czn_A Flavodoxin; FMN binding 47.2 27 0.00093 28.3 5.2 55 102-162 2-56 (169)
79 2a5l_A Trp repressor binding p 45.9 52 0.0018 27.1 6.9 40 101-141 6-45 (200)
80 3rot_A ABC sugar transporter, 45.8 13 0.00043 32.7 3.1 64 100-163 3-73 (297)
81 1xmp_A PURE, phosphoribosylami 45.6 30 0.001 29.9 5.3 73 101-176 12-93 (170)
82 1qpz_A PURA, protein (purine n 45.4 61 0.0021 29.0 7.7 63 98-161 56-124 (340)
83 3d02_A Putative LACI-type tran 45.3 23 0.00078 30.8 4.7 61 100-160 4-70 (303)
84 3s40_A Diacylglycerol kinase; 45.2 80 0.0027 28.6 8.6 42 101-142 9-51 (304)
85 3end_A Light-independent proto 45.2 26 0.00088 31.4 5.1 52 86-139 27-78 (307)
86 2q9u_A A-type flavoprotein; fl 45.1 49 0.0017 30.8 7.3 62 100-163 256-318 (414)
87 3huu_A Transcription regulator 44.9 10 0.00035 33.5 2.3 63 98-161 20-93 (305)
88 1obo_A Flavodoxin; electron tr 43.8 30 0.001 28.0 5.0 55 101-162 2-56 (169)
89 1hqk_A 6,7-dimethyl-8-ribityll 43.5 41 0.0014 28.4 5.8 61 101-161 13-81 (154)
90 3bil_A Probable LACI-family tr 43.3 32 0.0011 31.2 5.5 62 99-161 65-132 (348)
91 3qe2_A CPR, P450R, NADPH--cyto 43.2 9.2 0.00031 39.0 2.0 61 99-161 17-79 (618)
92 2hsg_A Glucose-resistance amyl 43.2 60 0.002 28.8 7.3 63 98-161 58-126 (332)
93 2rjo_A Twin-arginine transloca 43.0 28 0.00094 31.1 5.0 63 98-161 3-73 (332)
94 2bru_C NAD(P) transhydrogenase 42.5 22 0.00074 31.1 3.9 81 94-178 24-138 (186)
95 2rgy_A Transcriptional regulat 42.2 37 0.0013 29.5 5.6 63 98-161 6-77 (290)
96 2ohh_A Type A flavoprotein FPR 41.7 70 0.0024 29.4 7.7 62 100-163 256-318 (404)
97 2fvy_A D-galactose-binding per 41.1 19 0.00066 31.3 3.5 62 100-162 2-70 (309)
98 2h31_A Multifunctional protein 40.5 44 0.0015 32.8 6.2 65 98-165 263-335 (425)
99 2cxn_A Glucose-6-phosphate iso 40.0 83 0.0028 31.9 8.3 98 43-157 151-266 (557)
100 2o20_A Catabolite control prot 39.8 58 0.002 29.0 6.6 62 98-160 61-128 (332)
101 1ydg_A Trp repressor binding p 39.7 28 0.00097 29.3 4.3 41 100-141 6-46 (211)
102 1rvv_A Riboflavin synthase; tr 37.8 44 0.0015 28.2 5.1 61 101-161 13-81 (154)
103 1pno_A NAD(P) transhydrogenase 37.8 25 0.00085 30.6 3.5 82 95-180 18-133 (180)
104 2qh8_A Uncharacterized protein 37.2 22 0.00075 31.5 3.3 62 99-161 7-79 (302)
105 8abp_A L-arabinose-binding pro 37.0 43 0.0015 29.1 5.2 59 101-161 3-67 (306)
106 2zki_A 199AA long hypothetical 36.4 28 0.00096 28.9 3.7 39 101-141 5-43 (199)
107 1di0_A Lumazine synthase; tran 36.2 46 0.0016 28.2 5.0 61 101-161 11-79 (158)
108 1d4o_A NADP(H) transhydrogenas 36.1 27 0.00093 30.4 3.5 81 96-180 18-132 (184)
109 2ywx_A Phosphoribosylaminoimid 35.9 91 0.0031 26.5 6.7 71 103-176 2-78 (157)
110 2fsv_C NAD(P) transhydrogenase 35.7 33 0.0011 30.3 4.0 83 94-180 40-156 (203)
111 3h75_A Periplasmic sugar-bindi 35.4 73 0.0025 28.5 6.6 59 100-159 3-70 (350)
112 2vk2_A YTFQ, ABC transporter p 35.1 31 0.0011 30.3 3.9 61 101-162 3-69 (306)
113 2qv7_A Diacylglycerol kinase D 34.7 1.1E+02 0.0039 27.9 7.9 59 101-159 25-88 (337)
114 1e5d_A Rubredoxin\:oxygen oxid 33.6 1.4E+02 0.0046 27.4 8.3 62 100-163 252-314 (402)
115 1c2y_A Protein (lumazine synth 33.5 43 0.0015 28.4 4.3 61 101-161 14-81 (156)
116 2i14_A Nicotinate-nucleotide p 32.2 92 0.0031 29.9 7.0 57 100-156 233-293 (395)
117 2bpo_A CPR, P450R, NADPH-cytoc 32.0 96 0.0033 31.8 7.5 59 99-161 48-107 (682)
118 3lft_A Uncharacterized protein 31.7 54 0.0018 28.7 4.9 61 100-161 2-72 (295)
119 1t5b_A Acyl carrier protein ph 31.6 71 0.0024 26.2 5.4 41 101-141 2-46 (201)
120 2c92_A 6,7-dimethyl-8-ribityll 31.3 74 0.0025 27.0 5.5 59 101-161 18-82 (160)
121 3b6i_A Flavoprotein WRBA; flav 31.3 88 0.003 25.6 6.0 39 102-141 3-42 (198)
122 3aek_A Light-independent proto 31.2 80 0.0027 30.4 6.4 70 100-177 183-255 (437)
123 1ejb_A Lumazine synthase; anal 30.8 69 0.0024 27.4 5.2 61 101-161 17-90 (168)
124 2bfw_A GLGA glycogen synthase; 30.8 34 0.0012 27.7 3.2 53 102-161 71-125 (200)
125 2i1o_A Nicotinate phosphoribos 30.6 42 0.0014 32.4 4.3 57 101-157 236-297 (398)
126 2q62_A ARSH; alpha/beta, flavo 30.5 49 0.0017 29.5 4.4 43 100-142 34-77 (247)
127 3nq4_A 6,7-dimethyl-8-ribityll 30.2 77 0.0026 26.8 5.3 61 101-161 13-82 (156)
128 1ag9_A Flavodoxin; electron tr 29.9 77 0.0026 26.0 5.3 54 102-162 2-55 (175)
129 1djl_A Transhydrogenase DIII; 29.6 35 0.0012 30.3 3.1 83 94-180 39-155 (207)
130 2obx_A DMRL synthase 1, 6,7-di 29.3 55 0.0019 27.7 4.3 61 101-161 12-80 (157)
131 2vzf_A NADH-dependent FMN redu 29.2 51 0.0017 27.6 4.1 42 102-143 4-47 (197)
132 1kz1_A 6,7-dimethyl-8-ribityll 29.1 59 0.002 27.6 4.4 61 101-161 18-87 (159)
133 2qu7_A Putative transcriptiona 29.1 36 0.0012 29.4 3.3 61 99-161 7-73 (288)
134 2bon_A Lipid kinase; DAG kinas 28.5 1E+02 0.0035 28.2 6.4 57 101-159 30-90 (332)
135 3sho_A Transcriptional regulat 28.0 1.5E+02 0.005 24.1 6.8 67 94-164 33-100 (187)
136 3rpe_A MDAB, modulator of drug 27.7 55 0.0019 28.8 4.2 63 98-161 23-92 (218)
137 2jvf_A De novo protein M7; tet 27.6 1.5E+02 0.005 22.3 5.8 53 87-139 31-86 (96)
138 3dma_A Exopolyphosphatase-rela 27.6 1.6E+02 0.0055 27.4 7.7 69 94-164 15-104 (343)
139 1ycg_A Nitric oxide reductase; 26.7 1.5E+02 0.005 27.2 7.2 78 83-163 235-313 (398)
140 2hna_A Protein MIOC, flavodoxi 26.6 1.3E+02 0.0045 23.5 6.0 54 102-162 3-56 (147)
141 2xdq_B Light-independent proto 26.3 3.4E+02 0.012 26.4 10.2 76 100-176 166-245 (511)
142 3lkv_A Uncharacterized conserv 25.8 1.5E+02 0.005 26.3 6.8 111 87-202 126-246 (302)
143 3cf4_G Acetyl-COA decarboxylas 25.6 1.5E+02 0.005 24.5 6.3 68 93-162 27-118 (170)
144 1iow_A DD-ligase, DDLB, D-ALA\ 24.7 1.6E+02 0.0056 25.5 6.8 57 101-158 3-61 (306)
145 3q0i_A Methionyl-tRNA formyltr 24.1 1.1E+02 0.0038 28.4 5.8 40 121-163 54-97 (318)
146 2x7x_A Sensor protein; transfe 23.9 62 0.0021 28.7 3.9 61 99-161 5-72 (325)
147 3h5t_A Transcriptional regulat 23.7 52 0.0018 29.8 3.4 62 98-161 66-138 (366)
148 3n2n_F Anthrax toxin receptor 23.3 1.7E+02 0.0058 23.3 6.2 49 100-150 106-157 (185)
149 3czx_A Putative N-acetylmuramo 22.9 88 0.003 26.5 4.5 47 115-163 30-82 (182)
150 2fzv_A Putative arsenical resi 22.9 87 0.003 28.7 4.7 44 99-142 57-101 (279)
151 3oy2_A Glycosyltransferase B73 22.4 31 0.0011 31.4 1.6 57 104-160 218-282 (413)
152 1o4u_A Type II quinolic acid p 22.4 1.2E+02 0.0042 27.8 5.6 56 103-162 215-272 (285)
153 1req_B Methylmalonyl-COA mutas 22.0 34 0.0012 35.3 1.9 66 93-164 552-624 (637)
154 3u7r_A NADPH-dependent FMN red 21.5 60 0.0021 27.8 3.1 38 100-138 2-40 (190)
155 3pn9_A Proline dipeptidase; st 21.3 61 0.0021 25.1 2.9 42 118-160 6-51 (138)
156 3fwy_A Light-independent proto 21.1 1.1E+02 0.0039 28.0 5.1 48 90-139 38-85 (314)
157 2lti_A Astexin1; sidechain-TO- 20.9 30 0.001 20.4 0.7 10 284-293 4-13 (26)
158 1yob_A Flavodoxin 2, flavodoxi 20.8 38 0.0013 28.0 1.7 55 102-162 2-56 (179)
159 1wd5_A Hypothetical protein TT 20.6 1.5E+02 0.0051 25.2 5.5 70 118-193 135-208 (208)
160 1xov_A PLY protein, plypsa; al 20.5 1E+02 0.0035 28.9 4.8 48 115-162 39-94 (326)
161 1tqj_A Ribulose-phosphate 3-ep 20.1 81 0.0028 27.6 3.8 44 116-159 157-202 (230)
No 1
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=100.00 E-value=2.2e-49 Score=386.45 Aligned_cols=167 Identities=23% Similarity=0.335 Sum_probs=153.9
Q ss_pred CCCCCCcccceeCCeeeecCCCCCCCceeEEEEcCCcchHHHHHHhcCCCeEEEEcCCCCccccccCcHHHHHHHHHHHH
Q 020984 15 CGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLV 94 (319)
Q Consensus 15 ~~~~~gct~~~i~~~~~~l~~~~~~~~~~i~~Ig~~~~~l~~l~l~~~~~~v~~yDP~s~~~~~e~~~~~k~l~~R~~~I 94 (319)
-|+++|||.+.+.. +..+++|||+|+||++++||+ |.+++|+|||+++++..+ ++++++|+||++|
T Consensus 193 ~gqvLGC~~~~~~~-----------~~d~~lyvG~g~FH~~~l~l~-~~~~v~~yDP~s~~~~~~--~~~~~l~rR~~~I 258 (378)
T 3lzd_A 193 PGQVLGCNYSVAKV-----------RGEGILFIGSGIFHPLGLAVA-TRKKVLAIDPYTKAFSWI--DPERFIRKRWAQI 258 (378)
T ss_dssp TTBCBTTBCGGGCS-----------SCSEEEEESSSSHHHHHHHHH-HCSEEEEECTTTCCEEEC--CCHHHHHHHHHHH
T ss_pred CCccccccCCCccc-----------CCceEEEEcCCchhHHHHHhc-cCCcEEEECCCCCceeec--cHHHHHHHHHHHH
Confidence 48999999987641 113789999999999999999 899999999999998654 5899999999999
Q ss_pred HhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCcccccccCCCCc
Q 020984 95 EKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAP 174 (319)
Q Consensus 95 ~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~sidd~~~f~kP 174 (319)
+||++|++||||+|||++|+|+.++++|+++|+++|||+|+|+||+|||+||+|| +||+||++||||++|||+++|+||
T Consensus 259 ~kA~dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF-~iD~fV~vaCPrlsidd~~~F~KP 337 (378)
T 3lzd_A 259 AKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGF-PFEAYVVVACPRVPLDDYGAWRKP 337 (378)
T ss_dssp HHHTTCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTS-CCSEEEECSCTHHHHSCCSCCSSC
T ss_pred HHHhcCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCCEEEEecCCCccccchhhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999 699999999999999999999999
Q ss_pred ccCHHHHHHhhCCCCCCCcceeeccc
Q 020984 175 VITPFEAMLAFGRGTQWTGAYVMEFR 200 (319)
Q Consensus 175 vlTP~El~vAL~~~~~W~~~y~~Df~ 200 (319)
||||||++|||+... .|+||+-
T Consensus 338 vLTPyE~evAL~~~~----~y~~dei 359 (378)
T 3lzd_A 338 VLTPKEVEILLGLRE----EYEFDEI 359 (378)
T ss_dssp EECHHHHHHHTTSCC----SCCCCCC
T ss_pred ccCHHHHHHHhCCCC----CCCCccc
Confidence 999999999999743 6676664
No 2
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=86.80 E-value=1.7 Score=37.48 Aligned_cols=77 Identities=9% Similarity=0.097 Sum_probs=52.0
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCCcccccccCCCC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTALLDSKEFLA 173 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr~sidd~~~f~k 173 (319)
.++||+|+..+.-..+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|+.++.......-.....
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~l~~~~~ 80 (255)
T 1byk_A 2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-QFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS 80 (255)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-TTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-CCcHHHHHHHHHHHHhcCCCEEEEecCccccHHHHHhcCC
Confidence 478999999887777889999999999999987665543 334433 2222 379999998875433222233345
Q ss_pred cccC
Q 020984 174 PVIT 177 (319)
Q Consensus 174 PvlT 177 (319)
|+|+
T Consensus 81 pvV~ 84 (255)
T 1byk_A 81 SLVL 84 (255)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6553
No 3
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=84.42 E-value=2.5 Score=37.09 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=53.9
Q ss_pred hccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCCcccccccC
Q 020984 97 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQTALLDSKE 170 (319)
Q Consensus 97 a~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr~sidd~~~ 170 (319)
.+..++||+|+..+....+..+++.+++.++++|..+.++.-..-++++ +..+ ..+|.+|+.+ +. +..-..
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~--~~~~~~ 83 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA-FT--IPPNFH 83 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-CC--CCTTCC
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-hH--HHHHHh
Confidence 4567899999999887788899999999999999984444444445443 2222 3799999887 32 233344
Q ss_pred CCCcccC
Q 020984 171 FLAPVIT 177 (319)
Q Consensus 171 f~kPvlT 177 (319)
...|+|+
T Consensus 84 ~~iPvV~ 90 (277)
T 3hs3_A 84 LNTPLVM 90 (277)
T ss_dssp CSSCEEE
T ss_pred CCCCEEE
Confidence 4567653
No 4
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=80.01 E-value=6.3 Score=35.25 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=56.2
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEc---------CCCCHHhhc--------CCCCCCEEEEecC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM---------GKPNPAKLA--------NFPECDVFINVSC 160 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~v---------g~in~~KLa--------Nf~eID~fV~iaC 160 (319)
..+++||||- + ....+-+.+++.|+++|.++..+.- ++++++.+. .-+++|+. +++|
T Consensus 115 ~g~~rvgllt-p----y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adai-vL~C 188 (240)
T 3ixl_A 115 LGVRRVALAT-A----YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGI-LLSS 188 (240)
T ss_dssp TTCSEEEEEE-S----SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEE-EEEC
T ss_pred hCCCEEEEEe-C----ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEE-EEeC
Confidence 3679999983 4 3355567888999999999776542 344544332 34578985 5669
Q ss_pred CCccccc-----ccCCCCcccCHHHHHH
Q 020984 161 AQTALLD-----SKEFLAPVITPFEAML 183 (319)
Q Consensus 161 Pr~sidd-----~~~f~kPvlTP~El~v 183 (319)
-++.... ..++.+||+++-++.+
T Consensus 189 T~l~~l~~i~~le~~lg~PVids~~a~~ 216 (240)
T 3ixl_A 189 GGLLTLDAIPEVERRLGVPVVSSSPAGF 216 (240)
T ss_dssp TTSCCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred CCCchhhhHHHHHHHhCCCEEeHHHHHH
Confidence 9998754 4678899999987644
No 5
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=79.69 E-value=2.3 Score=37.86 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=46.9
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCCc
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQT 163 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr~ 163 (319)
+..++||+|+..+.-..+..+++.+++.++++|....++.... ++++ +..+ ..+|.+|+.++...
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDA-PPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCS-TTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3467899999998888889999999999999999988776553 2222 1122 37999999876543
No 6
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=79.27 E-value=4.4 Score=35.34 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=48.5
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCP 161 (319)
+..++||+|+..+.-..+..+++.+++.++++|....++... -++++...+ .+|.+|+.++.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~-~vdgiI~~~~~ 67 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGK-KSHLFIPEK-MVDGAIILDWT 67 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEEST-TTTTCCCTT-TCSEEEEECTT
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCC-CCHHHHhhc-cccEEEEecCC
Confidence 456899999998877788899999999999999887665543 345555555 89999988764
No 7
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=78.18 E-value=3.3 Score=37.66 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=53.6
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCCCcccccccCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTALLDSKEF 171 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCPr~sidd~~~f 171 (319)
+..++||+|+..+.-..+..+++.+++.++++|....++..+. +++. ..+ ..+|.+|+.++ +......
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~l~~~~vdGiIi~~~----~~~~~~~ 135 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS--VQAQDVVMESLISIQAAGIIHVPV----VGSIAPE 135 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--HHHHHHHHHHHHHHTCSEEEECCC----TTCCC-C
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHHHhCCCCEEEEcch----HHHHhhC
Confidence 3468999999998877888999999999999999888877776 4432 222 27999998776 3333445
Q ss_pred CCcccC
Q 020984 172 LAPVIT 177 (319)
Q Consensus 172 ~kPvlT 177 (319)
..|+|+
T Consensus 136 ~iPvV~ 141 (333)
T 3jvd_A 136 GIPMVQ 141 (333)
T ss_dssp CSCEEE
T ss_pred CCCEEE
Confidence 567653
No 8
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=78.10 E-value=1.5 Score=38.23 Aligned_cols=61 Identities=15% Similarity=0.291 Sum_probs=44.4
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEec
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVS 159 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~ia 159 (319)
+..++||+|+..+....+..+++.+++.++++|.+..++.... ++++. ..+ ..+|.+|+.+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDN-DIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEec
Confidence 4567899999998878888999999999999999887665543 44332 122 3799999876
No 9
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=78.06 E-value=3 Score=35.98 Aligned_cols=61 Identities=18% Similarity=0.357 Sum_probs=46.9
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc----CC--CCCCEEEEecCC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 161 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa----Nf--~eID~fV~iaCP 161 (319)
.++||+|+..+....+..+++.+++.++++|.+..++.... ++++.. .+ ..+|.+|+.++.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDD-QPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 57899999998878888999999999999999887766543 444321 12 279999887664
No 10
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=77.93 E-value=2.3 Score=37.31 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=53.5
Q ss_pred hccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCCCcc--cccc
Q 020984 97 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTA--LLDS 168 (319)
Q Consensus 97 a~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCPr~s--idd~ 168 (319)
.+..++||+|+..+.-..+..+++.+++.++++|.+..++.... ++++. ..+ ..+|.+|+.++.... +..-
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 83 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSEGEHDYLRTE 83 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHS
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHh
Confidence 45678999999998777788999999999999998877766543 44432 122 379999987765411 1112
Q ss_pred cCCCCccc
Q 020984 169 KEFLAPVI 176 (319)
Q Consensus 169 ~~f~kPvl 176 (319)
..-..|+|
T Consensus 84 ~~~~iPvV 91 (291)
T 3egc_A 84 LPKTFPIV 91 (291)
T ss_dssp SCTTSCEE
T ss_pred hccCCCEE
Confidence 33455665
No 11
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=76.36 E-value=4.9 Score=32.15 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=44.3
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCc
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQT 163 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~ 163 (319)
.++.||.+|..+ +...+++.|.+.|++.|.++-++-+.+.++..|.. +.|. |+++||-.
T Consensus 2 ~ki~I~y~S~tG-nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~--~~d~-ii~g~pty 60 (148)
T 3f6r_A 2 SKVLIVFGSSTG-NTESIAQKLEELIAAGGHEVTLLNAADASAENLAD--GYDA-VLFGCSAW 60 (148)
T ss_dssp CEEEEEEECSSS-HHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT--TCSE-EEEEECEE
T ss_pred CeEEEEEECCCc-hHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc--cCCE-EEEEeccc
Confidence 368899999753 56789999999999999988888888877665541 5565 56667753
No 12
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=75.93 E-value=3.8 Score=35.61 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=47.1
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc----CC--CCCCEEEEecCCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQ 162 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa----Nf--~eID~fV~iaCPr 162 (319)
+..++||+|+..+....+..+++.+++.++++|....++... ++++.. .+ ..+|.+| +++..
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiI-~~~~~ 70 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL--TSQAGTDPITSALSMRPDGII-IAQDI 70 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS--SSCSSSCHHHHHHTTCCSEEE-EESCC
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHHhCCCCEEE-ecCCC
Confidence 456899999999888889999999999999999987777666 433211 11 3799999 66643
No 13
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=75.39 E-value=6.3 Score=34.15 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=56.6
Q ss_pred hccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCC------CCCCEEEEecCCCcccc--c
Q 020984 97 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--D 167 (319)
Q Consensus 97 a~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf------~eID~fV~iaCPr~sid--d 167 (319)
|+....++||+|+ ..-+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|==...+- -
T Consensus 3 ~m~~~~V~IimgS---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgvv 79 (169)
T 3trh_A 3 AMNKIFVAILMGS---DSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTI 79 (169)
T ss_dssp ---CCEEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHH
T ss_pred CCCCCcEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHH
Confidence 4566789999998 667899999999999999998777776 6679999988 56888887776655543 1
Q ss_pred ccCCCCccc
Q 020984 168 SKEFLAPVI 176 (319)
Q Consensus 168 ~~~f~kPvl 176 (319)
...-..|||
T Consensus 80 A~~t~~PVI 88 (169)
T 3trh_A 80 AAHTLKPVI 88 (169)
T ss_dssp HHTCSSCEE
T ss_pred HhcCCCCEE
Confidence 223456665
No 14
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=74.55 E-value=2.8 Score=36.65 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=46.8
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCCCc
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQT 163 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCPr~ 163 (319)
+..++||+|+..+....+..+++.+++.++++|.+..++... -++++. ..+ ..+|.+|+.++...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ-NSRISEREQILEFVHLKVDAIFITTLDDV 76 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHHHHTTCSEEEEECSCTT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 457899999999887788899999999999999987766544 344322 222 37999998876544
No 15
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=74.19 E-value=4.3 Score=35.36 Aligned_cols=66 Identities=6% Similarity=-0.066 Sum_probs=44.8
Q ss_pred ccCCEEEEEEcCCC--ccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhh----cCC--CCCCEEEEecCCCc
Q 020984 98 KDANIIGVLVGTLG--VAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKL----ANF--PECDVFINVSCAQT 163 (319)
Q Consensus 98 ~~a~~iGIivgTl~--~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KL----aNf--~eID~fV~iaCPr~ 163 (319)
...++||+|+..+. -..+..+++.+++.++++|.+..++..+ +-++++. ..+ ..+|.+|+.++...
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 77 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYE 77 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTT
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH
Confidence 34678999998877 6677789999999999999776554442 3444332 222 37999888776543
No 16
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=73.70 E-value=4.1 Score=36.36 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=48.6
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCCC
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQ 162 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCPr 162 (319)
+.++||+|+..+....+..+++.+++.++++|.+..++. ..-++++- .++ ..+|.+|+.++..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~ 70 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY-ADDDIPNQLSQIENMVTKGVKVLVIASIDG 70 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee-CCCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 568999999999888888999999999999998876665 55555432 222 2699999877653
No 17
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=73.46 E-value=6.3 Score=32.68 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=48.9
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCC-CHHhhc-CCCCCCEEEEecCCCc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP-NPAKLA-NFPECDVFINVSCAQT 163 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~i-n~~KLa-Nf~eID~fV~iaCPr~ 163 (319)
.+++.||.+|.. -+...+++.|.+.|++.|.++-++-+.+. .+..+. .+.+.|+ |+++||-.
T Consensus 4 ~~kv~IvY~S~~-GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~-ii~Gspty 67 (159)
T 3fni_A 4 ETSIGVFYVSEY-GYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTG-LVIGMSPA 67 (159)
T ss_dssp CCEEEEEECTTS-TTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEE-EEEECCBT
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCE-EEEEcCcC
Confidence 467899999975 56678999999999999999888999988 877664 3556675 66778854
No 18
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=73.35 E-value=6.5 Score=31.05 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=43.2
Q ss_pred EEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984 103 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 162 (319)
Q Consensus 103 iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr 162 (319)
|.|+.+|.. -+...+++.|.+.|+++|.++-++-+.+.++..|. +.|. |+++||-
T Consensus 1 i~I~Y~S~t-GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~---~~d~-iiig~pt 55 (138)
T 5nul_A 1 MKIVYWSGT-GNTEKMAELIAKGIIESGKDVNTINVSDVNIDELL---NEDI-LILGCSA 55 (138)
T ss_dssp CEEEEECSS-SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHT---TCSE-EEEEECC
T ss_pred CEEEEECCC-chHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHh---hCCE-EEEEcCc
Confidence 457888864 45678999999999999999999999999888775 4565 5666774
No 19
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=72.54 E-value=4.6 Score=35.67 Aligned_cols=80 Identities=14% Similarity=0.253 Sum_probs=53.6
Q ss_pred hccCCEEEEEEcCCCccCcH-HHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCCCcc-cccc
Q 020984 97 AKDANIIGVLVGTLGVAGYL-HMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCAQTA-LLDS 168 (319)
Q Consensus 97 a~~a~~iGIivgTl~~q~~~-~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCPr~s-idd~ 168 (319)
.+..++||+|+..+....+. .+++.+++.++++|....++... -++++. ..+ ..+|.+|+.++.... +...
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~ 88 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG-GSSEREVEIWKMFQSHRIDGVLYVTMYRRIVDPES 88 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEEEEEEEECCCCC
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEecCCccHHHHHH
Confidence 34578999999998877788 99999999999999887766543 344322 122 279999988765332 2222
Q ss_pred cCCCCcccC
Q 020984 169 KEFLAPVIT 177 (319)
Q Consensus 169 ~~f~kPvlT 177 (319)
.....|+|+
T Consensus 89 ~~~~iPvV~ 97 (301)
T 3miz_A 89 GDVSIPTVM 97 (301)
T ss_dssp TTCCCCEEE
T ss_pred HhCCCCEEE
Confidence 334556653
No 20
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=72.28 E-value=10 Score=33.82 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhhccC-CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCC
Q 020984 83 PLKILKRRYYLVEKAKDA-NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCA 161 (319)
Q Consensus 83 ~~k~l~~R~~~I~ka~~a-~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCP 161 (319)
..+..+-.-.++.++++. +.+.|+.||.. -+...++++|.+.+ .+|.++-++-|++.+++.|. +.+.+| +.||
T Consensus 22 ~~~av~~~~~l~~~~~~~~~kv~IlYgS~t-Gnte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l~---~~~~vI-~~ts 95 (219)
T 3hr4_A 22 LVKAVLFACMLMRKTMASRVRVTILFATET-GKSEALAWDLGALF-SCAFNPKVVCMDKYRLSCLE---EERLLL-VVTS 95 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECSS-SHHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGGG---TCSEEE-EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHhc---cCCeEE-EEEe
Confidence 455566666788888875 58999999976 34567888888887 47888888889998877764 345444 4455
No 21
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=72.22 E-value=4.3 Score=35.78 Aligned_cols=64 Identities=2% Similarity=-0.123 Sum_probs=48.9
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc----CC--CCCCEEEEecCCCc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCAQT 163 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa----Nf--~eID~fV~iaCPr~ 163 (319)
.++||+|+.......+..+++.+++.++++|.+..++....-++++.. ++ ..+|.+|+.++...
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 73 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV 73 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 578999999988888889999999999999988876566666665432 22 26999998876544
No 22
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=71.65 E-value=14 Score=28.56 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=43.7
Q ss_pred EEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCc
Q 020984 103 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQT 163 (319)
Q Consensus 103 iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~ 163 (319)
+.||.+|.. -+...+++.+.+.+++.|.++-++-+.+..+++|.. .|. |+++||-.
T Consensus 2 i~iiy~S~t-GnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~---~d~-vi~g~p~y 57 (137)
T 2fz5_A 2 VEIVYWSGT-GNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVAS---KDV-ILLGCPAM 57 (137)
T ss_dssp EEEEECCSS-SHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHT---CSE-EEEECCCB
T ss_pred EEEEEECCC-ChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhc---CCE-EEEEcccc
Confidence 568888865 446789999999999999998889999888877754 465 56677853
No 23
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=71.12 E-value=7.8 Score=30.82 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=42.6
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCC-CCEEEEecCCCc
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPE-CDVFINVSCAQT 163 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~e-ID~fV~iaCPr~ 163 (319)
++.||.++..+ +...+++.|.+.+.+.|.++.++-+.+.++.. +.+ .|.+ +++||-.
T Consensus 2 ki~iiy~S~~G-nt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~---l~~~~d~i-i~~~p~y 59 (147)
T 1f4p_A 2 KALIVYGSTTG-NTEYTAETIARELADAGYEVDSRDAASVEAGG---LFEGFDLV-LLGCSTW 59 (147)
T ss_dssp EEEEEEECSSS-HHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTT---TTTTCSEE-EEEECEE
T ss_pred eEEEEEECCcC-HHHHHHHHHHHHHHhcCCeeEEEehhhCCHHH---hcCcCCEE-EEEeCCC
Confidence 46788898864 56789999999999999988888887776543 455 6764 5566744
No 24
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=70.81 E-value=17 Score=32.96 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=54.8
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC---------CCCHHhhc------CCCCCCEEEEecCCCc
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG---------KPNPAKLA------NFPECDVFINVSCAQT 163 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg---------~in~~KLa------Nf~eID~fV~iaCPr~ 163 (319)
.+++||||. +.. ..+-..+++.+++.|.++..+.-. +++++.+. .-+++|+.|+=||=.+
T Consensus 145 g~~rvgvlt-p~~----~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~l 219 (273)
T 2xed_A 145 DAQRVALVT-PYM----RPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQM 219 (273)
T ss_dssp TCCEEEEEE-CSC----HHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSSS
T ss_pred CCCeEEEEc-CCh----hhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCCc
Confidence 568999994 422 334458888999999997655433 33444442 2347999777669999
Q ss_pred cccc-----ccCCCCcccCHHHHHH
Q 020984 164 ALLD-----SKEFLAPVITPFEAML 183 (319)
Q Consensus 164 sidd-----~~~f~kPvlTP~El~v 183 (319)
+..+ ...+.+|||++-.+.+
T Consensus 220 ~~~~~~~~le~~lg~PVids~~a~a 244 (273)
T 2xed_A 220 PSLPLVETAEREFGIPVLSAATAGA 244 (273)
T ss_dssp CCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred chHHhHHHHHHHhCCCEEcHHHHHH
Confidence 9742 3457899999988755
No 25
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=70.26 E-value=6.5 Score=32.49 Aligned_cols=60 Identities=8% Similarity=-0.014 Sum_probs=47.1
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc-CCCCCCEEEEecCCCc
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 163 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa-Nf~eID~fV~iaCPr~ 163 (319)
++.|+.+|.. -+...+++.|.+.|++.|.++-++-+.+..+..+. .+.+.|+ |+++||-.
T Consensus 2 kv~IvY~S~t-GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~-ii~Gspty 62 (161)
T 3hly_A 2 SVLIGYLSDY-GYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARG-IVLGTPPS 62 (161)
T ss_dssp CEEEEECTTS-TTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSE-EEEECCBS
T ss_pred EEEEEEECCC-hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCE-EEEEcCCc
Confidence 3678888875 46778999999999999999888999998888764 3446776 56778854
No 26
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=69.30 E-value=11 Score=33.31 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=47.6
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCCc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQT 163 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr~ 163 (319)
.++||+|+..+....+..+++.+++.++++|.+..++.. .-++++ +.++ ..+|.+|+.+....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 70 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIPYNGQ 70 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECSSTT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 368999999998889999999999999999988766554 444433 2222 37999998877544
No 27
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=69.07 E-value=8 Score=33.60 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=46.7
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCP 161 (319)
++||+|+..+.-..+..+++.+++.++++|....++... -++++. ..+ ..+|.+|+.++.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-NNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 899999999988888999999999999999987766544 344432 122 379999987764
No 28
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=68.68 E-value=3.7 Score=36.28 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=47.5
Q ss_pred ccCCEEEEEEc----CCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCC-HHhh-cCC--CCCCEEEEecCCC
Q 020984 98 KDANIIGVLVG----TLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-PAKL-ANF--PECDVFINVSCAQ 162 (319)
Q Consensus 98 ~~a~~iGIivg----Tl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in-~~KL-aNf--~eID~fV~iaCPr 162 (319)
+..++||+|+. .+....+..+++.+++.++++|....++..+... ...+ ..+ ..+|.+|+.+...
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 45789999998 6766778899999999999999998888776421 1111 122 3799999877654
No 29
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=68.17 E-value=13 Score=32.30 Aligned_cols=65 Identities=15% Similarity=0.293 Sum_probs=50.3
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCC------CCCCEEEEecCCCccc
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTAL 165 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf------~eID~fV~iaCPr~si 165 (319)
..+..||||+|+ ..-+.+++...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|==...+
T Consensus 10 ~~~P~V~IimGS---~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahL 81 (173)
T 4grd_A 10 HSAPLVGVLMGS---SSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHL 81 (173)
T ss_dssp CSSCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCH
T ss_pred CCCCeEEEEeCc---HhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccc
Confidence 356789999998 678899999999999999997766666 5568888766 4678877666555444
No 30
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=67.49 E-value=14 Score=32.31 Aligned_cols=63 Identities=13% Similarity=0.272 Sum_probs=46.6
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
+...+||+|+..+.-..+..+++.+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++.
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-EDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45789999998887777789999999999999988765543 334443 2222 369999987764
No 31
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=66.59 E-value=26 Score=30.22 Aligned_cols=80 Identities=9% Similarity=0.038 Sum_probs=53.7
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCC---------CHHhhc----CC--C--CCCEEEEecC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP---------NPAKLA----NF--P--ECDVFINVSC 160 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~i---------n~~KLa----Nf--~--eID~fV~iaC 160 (319)
..+++|||| ++.. ..+-...++.+++.|.++....-..+ +++.+. .+ + ++|+ |+++|
T Consensus 106 ~g~~rvgvl-t~~~----~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gada-IvLgC 179 (223)
T 2dgd_A 106 LNVRKLWIG-TPYI----KERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADA-VYIAC 179 (223)
T ss_dssp TTCCEEEEE-ESSC----HHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSE-EEECC
T ss_pred cCCCeEEEE-eCCc----hHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCE-EEEeC
Confidence 346899999 4533 44455778888899988766543333 444432 12 2 6887 66789
Q ss_pred CCcccc---c--ccCCCCcccCHHHHHH
Q 020984 161 AQTALL---D--SKEFLAPVITPFEAML 183 (319)
Q Consensus 161 Pr~sid---d--~~~f~kPvlTP~El~v 183 (319)
=+++.. + ...+.+||+++-++.+
T Consensus 180 T~l~~~~~~~~l~~~~g~PVids~~~~a 207 (223)
T 2dgd_A 180 TALSTYEAVQYLHEDLDMPVVSENAAAM 207 (223)
T ss_dssp TTSCCTTHHHHHHHHHTSCEEEHHHHHH
T ss_pred CcccHHHHHHHHHHHhCCCEEEhHHHHH
Confidence 999973 2 3357899999998765
No 32
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=66.45 E-value=3.6 Score=36.32 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=43.8
Q ss_pred hhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecC
Q 020984 96 KAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 160 (319)
Q Consensus 96 ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaC 160 (319)
+.+..++||+|+..+.-..+..+++.+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++
T Consensus 12 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 12 SSKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS-DQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp ----CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ccCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 3446789999998877677789999999999999987665543 334432 2222 36999888765
No 33
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=65.98 E-value=6.2 Score=34.57 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=41.6
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
+..++||+|+..+.-..+..+++.+++.++++|.+..++.-..-++++ +..+ ..+|.+|+.++.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 356899999988877778899999999999999876554122223322 1111 379999987654
No 34
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=65.81 E-value=16 Score=31.47 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=50.0
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCC------CCCCEEEEecCCCccc
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTAL 165 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf------~eID~fV~iaCPr~si 165 (319)
+...++||+|+ ..-+.+++...+.|++.|..+-+-+++ .=+|+++..| .++++||.+|==...+
T Consensus 2 ~~~~V~Iimgs---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L 72 (163)
T 3ors_A 2 NAMKVAVIMGS---SSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHL 72 (163)
T ss_dssp -CCCEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCH
T ss_pred CCCeEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhh
Confidence 34679999998 667899999999999999998777776 6679998776 3588888776555544
No 35
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=65.49 E-value=12 Score=32.47 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=55.7
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCC------CCCCEEEEecCCCcccc--cccC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKE 170 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf------~eID~fV~iaCPr~sid--d~~~ 170 (319)
...++||+|+ ..-+.+++...+.|++.|..+-+-+++ .=+|++|..| .++++||.+|==...+- -...
T Consensus 7 ~~~V~IimgS---~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 83 (174)
T 3lp6_A 7 RPRVGVIMGS---DSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAA 83 (174)
T ss_dssp CCSEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHH
T ss_pred CCeEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhc
Confidence 4579999998 667899999999999999998777776 6679999988 57898887776555543 1223
Q ss_pred CCCccc
Q 020984 171 FLAPVI 176 (319)
Q Consensus 171 f~kPvl 176 (319)
-..|||
T Consensus 84 t~~PVI 89 (174)
T 3lp6_A 84 TPLPVI 89 (174)
T ss_dssp CSSCEE
T ss_pred cCCCEE
Confidence 445554
No 36
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=65.15 E-value=9.6 Score=33.35 Aligned_cols=68 Identities=22% Similarity=0.417 Sum_probs=49.8
Q ss_pred HhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCCC------CCCEEEEecCCCccc
Q 020984 95 EKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTAL 165 (319)
Q Consensus 95 ~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf~------eID~fV~iaCPr~si 165 (319)
+++.....++||+|+ ..-+.+.+...+.|+..|..+-+-+++ .=+|++|..|. ++++||.+|==...+
T Consensus 16 ~~~~~~~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L 90 (182)
T 1u11_A 16 DKAASAPVVGIIMGS---QSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHL 90 (182)
T ss_dssp ----CCCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH
T ss_pred hhhcCCCEEEEEECc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhh
Confidence 445556789999998 678899999999999999998777766 66788887663 378777666544443
No 37
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=65.14 E-value=16 Score=31.43 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=54.3
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCC------CCCCEEEEecCCCcccc--cccCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKEF 171 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf------~eID~fV~iaCPr~sid--d~~~f 171 (319)
..++||+|+ ..-+.+.+...+.|+..|..+-+-+++ .=+|++|..| .++++||.+|==...+- -...-
T Consensus 6 p~V~IimgS---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~t 82 (166)
T 3oow_A 6 VQVGVIMGS---KSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAKT 82 (166)
T ss_dssp EEEEEEESS---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHTC
T ss_pred CeEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhcc
Confidence 369999998 667899999999999999988777776 5678888877 45899887776665543 12233
Q ss_pred CCccc
Q 020984 172 LAPVI 176 (319)
Q Consensus 172 ~kPvl 176 (319)
..|||
T Consensus 83 ~~PVI 87 (166)
T 3oow_A 83 TLPVL 87 (166)
T ss_dssp SSCEE
T ss_pred CCCEE
Confidence 55554
No 38
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=64.73 E-value=16 Score=31.70 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=55.2
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCC------CCCCEEEEecCCCcccc--cccCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTALL--DSKEF 171 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf------~eID~fV~iaCPr~sid--d~~~f 171 (319)
..++||+|+ ..-+.+.+...+.|++-|..+-+-+++ .=+|++|..| .++++||.+|==...+- -...-
T Consensus 13 ~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 89 (174)
T 3kuu_A 13 VKIAIVMGS---KSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKT 89 (174)
T ss_dssp CCEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTC
T ss_pred CcEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhcc
Confidence 469999998 667899999999999999998777777 6679999887 46898887776655543 12234
Q ss_pred CCccc
Q 020984 172 LAPVI 176 (319)
Q Consensus 172 ~kPvl 176 (319)
..|||
T Consensus 90 ~~PVI 94 (174)
T 3kuu_A 90 LVPVL 94 (174)
T ss_dssp SSCEE
T ss_pred CCCEE
Confidence 56664
No 39
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=63.77 E-value=9.9 Score=33.03 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=47.0
Q ss_pred hccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 97 AKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 97 a~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
++..++||+|+..+....+..+++.+++.++++|.+..++..+ -++++ +.++ ..+|.+|+.++.
T Consensus 2 s~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 71 (291)
T 3l49_A 2 SLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG-RNDQTQVSQIQTLIAQKPDAIIEQLGN 71 (291)
T ss_dssp CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3457899999998876677789999999999999887766543 34433 2222 269999988765
No 40
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=63.41 E-value=8.7 Score=33.34 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=48.6
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQ 162 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr 162 (319)
+..++||+|+..+.-..+..+++.+++.++++|.+..++.... ++++ +..+ ..+|.+|+.++..
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA-DIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT-CHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 4678999999998777888999999999999998877766543 3332 2222 3799999988765
No 41
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=62.80 E-value=12 Score=32.60 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=45.3
Q ss_pred hccCCEEEEEEc-CCCccCcHHHHHHHHHHHHHhCCcEEEEEcCC-CC-H-HhhcCC--CCCCEEEEecCC
Q 020984 97 AKDANIIGVLVG-TLGVAGYLHMIHQMKELITKAGKKAYTLVMGK-PN-P-AKLANF--PECDVFINVSCA 161 (319)
Q Consensus 97 a~~a~~iGIivg-Tl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~-in-~-~KLaNf--~eID~fV~iaCP 161 (319)
.+..++||+|+. ...-..+..+++.+++.++++|....++.... .. . .-+..+ ..+|.+|+.++.
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 78 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS 78 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC
Confidence 346789999998 67777888999999999999999887665432 11 1 112223 269999987664
No 42
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=62.77 E-value=8.5 Score=33.60 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=48.3
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCC-CCHHhhc----CC--CCCCEEEEecCCCc
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK-PNPAKLA----NF--PECDVFINVSCAQT 163 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~-in~~KLa----Nf--~eID~fV~iaCPr~ 163 (319)
...+||+|+..+....+..+++.+++.++++|.+..++.... .++++-. ++ ..+|.+|+..+...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467999999998878888999999999999999877776654 2443322 22 26999998876544
No 43
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=61.54 E-value=19 Score=31.43 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=50.6
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCCC------CCCEEEEecCCCcccc--cccCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL--DSKEF 171 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf~------eID~fV~iaCPr~sid--d~~~f 171 (319)
..||||+|+ +.-+.+++...+.|++-|..+-+-+++ .=+|++|..|. ++++||..|=-...+- -....
T Consensus 23 p~V~IimGS---~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 23 SLVGVIMGS---TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp CSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred ccEEEEECC---HhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 469999999 667899999999999999998777766 56788887652 4566555544333332 12234
Q ss_pred CCccc
Q 020984 172 LAPVI 176 (319)
Q Consensus 172 ~kPvl 176 (319)
..|||
T Consensus 100 ~~PVI 104 (181)
T 4b4k_A 100 NLPVI 104 (181)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 55654
No 44
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=60.87 E-value=34 Score=26.47 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=45.2
Q ss_pred EEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCcccc--cc----cCCCCcc--c
Q 020984 105 VLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALL--DS----KEFLAPV--I 176 (319)
Q Consensus 105 IivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~sid--d~----~~f~kPv--l 176 (319)
++++.-|.... -++++|++.+++.|..+-+-..+--..... +.++|+++ .-|..... +. ..+..|| |
T Consensus 8 lvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~~~--~~~~D~Ii--~t~~l~~~~~~~~~~~~~~~~pv~~I 82 (109)
T 2l2q_A 8 LLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLSEV--VDRFDVVL--LAPQSRFNKKRLEEITKPKGIPIEII 82 (109)
T ss_dssp EEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHHHH--TTTCSEEE--ECSCCSSHHHHHHHHHHHHTCCEEEC
T ss_pred EEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHhh--cCCCCEEE--ECCccHHHHHHHHHHhcccCCCEEEE
Confidence 66666677667 888999999999998754433333332222 45788543 33555431 11 1356788 8
Q ss_pred CHHHHH
Q 020984 177 TPFEAM 182 (319)
Q Consensus 177 TP~El~ 182 (319)
+|..+.
T Consensus 83 ~~~~y~ 88 (109)
T 2l2q_A 83 NTIDYG 88 (109)
T ss_dssp CHHHHH
T ss_pred ChHHhc
Confidence 997764
No 45
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=59.39 E-value=21 Score=32.06 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=45.9
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc----CC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa----Nf--~eID~fV~iaCP 161 (319)
+..++||+|+..+....+..+++.+++.++++|....++.. .-++++.. .+ ..+|.+|+.+..
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 128 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-HYDAGQELQLLRAYLQHRPDGVLITGLS 128 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 34689999999998888999999999999999988765543 33443322 11 379999987754
No 46
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=58.96 E-value=20 Score=31.35 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=45.6
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCC-HH-hhcCC--CCCCEEEEecCCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPN-PA-KLANF--PECDVFINVSCAQ 162 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in-~~-KLaNf--~eID~fV~iaCPr 162 (319)
+..++||+|+ .+....+..+++.+++.++++|....++....-. .. .+.++ ..+|.+|+.++..
T Consensus 10 ~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 77 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRF 77 (289)
T ss_dssp ---CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCC
T ss_pred CCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3568999999 8877778899999999999999888777655321 11 22222 3799999987654
No 47
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=58.05 E-value=8.5 Score=35.07 Aligned_cols=63 Identities=10% Similarity=0.213 Sum_probs=45.3
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc----CC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa----Nf--~eID~fV~iaCP 161 (319)
+..++||+|+..+.-..+..+++.+++.++++|....++..+ -++++.. .+ ..+|.+|+.+..
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiI~~~~~ 136 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTA-YSPEREEQLVETMLRRRPEAMVLSYDG 136 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 346799999999887788899999999999999887665443 3444321 12 279999987654
No 48
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=57.62 E-value=11 Score=35.35 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=40.4
Q ss_pred hhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCC--CCCEEEE
Q 020984 96 KAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--ECDVFIN 157 (319)
Q Consensus 96 ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~--eID~fV~ 157 (319)
+.+..++||+|+. ..-..+..+++-+++.++++|....++...+. .+.+..+. .+|.+|+
T Consensus 21 ~~~~s~~Igvv~~-~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~-~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 21 MFTKRHRITLLFN-ANKAYDRQVVEGVGEYLQASQSEWDIFIEEDF-RARIDKIKDWLGDGVIA 82 (412)
T ss_dssp CCCCCEEEEEECC-TTSHHHHHHHHHHHHHHHHHTCCEEEEECC-C-C--------CCCSEEEE
T ss_pred CCCCCceEEEEeC-CcchhhHHHHHHHHHHHHhcCCCeEEEecCCc-cchhhhHhcCCCCEEEE
Confidence 3456789999994 55556668999999999999998877765432 22344442 6999887
No 49
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=57.22 E-value=7.4 Score=33.78 Aligned_cols=62 Identities=11% Similarity=0.260 Sum_probs=43.0
Q ss_pred cCCEEEEEEcC--CCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 99 DANIIGVLVGT--LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 99 ~a~~iGIivgT--l~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
...+||+|+.. +....+..+++.+++.++++|.+..++. ..-++++ +..+ ..+|.+|+.++.
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 87 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHSAEEERQAIQYLLDLRCDAIMIYPRF 87 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC-CTTSHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe-CCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 46899999987 7777788999999999999998765543 3345443 2222 379998887653
No 50
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=57.03 E-value=11 Score=32.63 Aligned_cols=64 Identities=8% Similarity=0.118 Sum_probs=45.4
Q ss_pred hccCCEEEEEEcC-----CCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCC
Q 020984 97 AKDANIIGVLVGT-----LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 161 (319)
Q Consensus 97 a~~a~~iGIivgT-----l~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCP 161 (319)
.+..++||+|+.. +....+..+++.+++.++++|.+..++.. .-++++. ..+ ..+|.+|++++.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTG-ETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCC-CSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4567899999999 88788889999999999999987655433 3333331 111 379999987654
No 51
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=56.25 E-value=6.7 Score=34.39 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=42.3
Q ss_pred hccCCEEEEEEcCCCc--cCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHH---hhc-CC--CCCCEEEEecC
Q 020984 97 AKDANIIGVLVGTLGV--AGYLHMIHQMKELITKAGKKAYTLVMGKPNPA---KLA-NF--PECDVFINVSC 160 (319)
Q Consensus 97 a~~a~~iGIivgTl~~--q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~---KLa-Nf--~eID~fV~iaC 160 (319)
.+..++||+|+..... ..+..+++.+++.++++|....++.... +++ .+. .+ ..+|.+|+++.
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH-AKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS-GGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred cCCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc-chhHHHHHHHHHHcCCccEEEEecC
Confidence 3467899999998764 5677899999999999997766554432 111 111 12 37999988753
No 52
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=55.93 E-value=30 Score=30.21 Aligned_cols=63 Identities=16% Similarity=0.343 Sum_probs=49.0
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCC------CCCCEEEEecCCCccc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANF------PECDVFINVSCAQTAL 165 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf------~eID~fV~iaCPr~si 165 (319)
...+|||+|+ ..-+.+++...+.|++-|..+-+-++| .=+|++|..| .++++||.+|==...+
T Consensus 13 ~~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L 82 (183)
T 1o4v_A 13 VPRVGIIMGS---DSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHL 82 (183)
T ss_dssp -CEEEEEESC---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH
T ss_pred CCeEEEEecc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCccccc
Confidence 5789999998 678899999999999999997777766 5678888877 3588777666544443
No 53
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=55.61 E-value=11 Score=32.90 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=41.5
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
++||+|+..+.-..+..+++-+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS-QNDTAKESAHFDAIIAAGYDAIIFNPTD 68 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 57899998877667778888999999999987655443 334433 2222 268988877654
No 54
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=54.95 E-value=20 Score=31.19 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=44.9
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 160 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaC 160 (319)
+..++||+|+..+.-..+..+++.+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT-ESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45689999998877777789999999999999988765543 334443 2222 36999888765
No 55
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=54.58 E-value=25 Score=30.01 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=54.2
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCCC-------CCCEEEEecCCCcccc--cccC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP-------ECDVFINVSCAQTALL--DSKE 170 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf~-------eID~fV~iaCPr~sid--d~~~ 170 (319)
..++||+|+ ..-+.+.+...+.|++.|..+-+-+++ .=+|++|..|. ++++||.+|==...+- -...
T Consensus 3 ~~V~Iimgs---~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~ 79 (159)
T 3rg8_A 3 PLVIILMGS---SSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGF 79 (159)
T ss_dssp CEEEEEESS---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHH
T ss_pred CeEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhc
Confidence 468999998 667899999999999999997777766 66799998773 5788887776555543 1223
Q ss_pred CCCccc
Q 020984 171 FLAPVI 176 (319)
Q Consensus 171 f~kPvl 176 (319)
-..|||
T Consensus 80 t~~PVI 85 (159)
T 3rg8_A 80 VKGATI 85 (159)
T ss_dssp SSSCEE
T ss_pred cCCCEE
Confidence 455654
No 56
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=54.45 E-value=31 Score=30.81 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=43.7
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
+...+||+|+.......+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+| .++.
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI-~~~~ 125 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNT-DDDKEKEKTYLEVLQSHRVAGII-ASRS 125 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEE-EETC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHhCCCCEEE-ECCC
Confidence 35689999998877667789999999999999988765544 334433 2222 3699988 6543
No 57
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=53.82 E-value=14 Score=31.71 Aligned_cols=75 Identities=12% Similarity=0.023 Sum_probs=44.9
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHH----hhcCC--CCCCEEEEecCCCc--ccccccCCCC
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA----KLANF--PECDVFINVSCAQT--ALLDSKEFLA 173 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~----KLaNf--~eID~fV~iaCPr~--sidd~~~f~k 173 (319)
+||+|+..+.-..+..+++.+++.++++|.+..++.. .-+++ .+..+ ..+|.+|+.++... .+..-..-..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~i 79 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPI-LSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTER 79 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCC-CSCCCCC---------CCCSEEEEESCCCC------CCSCSS
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-CCchhhHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHhhcCC
Confidence 4899998887777789999999999999977654332 22222 22233 26999888776432 1222233345
Q ss_pred cccC
Q 020984 174 PVIT 177 (319)
Q Consensus 174 PvlT 177 (319)
|+|.
T Consensus 80 PvV~ 83 (276)
T 2h0a_A 80 PVVL 83 (276)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7654
No 58
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=53.48 E-value=25 Score=30.07 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=42.5
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 162 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr 162 (319)
...+.+.|+.+|.. -+...+++.|.+.|.+.|.++.++-+.+.. ..+.+.|. |+++||-
T Consensus 19 ~~~~kv~IvY~S~t-GnTe~~A~~ia~~l~~~g~~v~v~~l~~~~----~~l~~~d~-vi~g~~T 77 (191)
T 1bvy_F 19 AHNTPLLVLYGSNM-GTAEGTARDLADIAMSKGFAPQVATLDSHA----GNLPREGA-VLIVTAS 77 (191)
T ss_dssp --CCCEEEEEECSS-SHHHHHHHHHHHHHHTTTCCCEEEEGGGST----TCCCSSSE-EEEEECC
T ss_pred cCCCeEEEEEECCC-hHHHHHHHHHHHHHHhCCCceEEeeHHHhh----hhhhhCCe-EEEEEee
Confidence 34577889999975 445688999999999899988888887752 24556665 5566774
No 59
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=52.86 E-value=29 Score=30.00 Aligned_cols=66 Identities=6% Similarity=0.004 Sum_probs=48.8
Q ss_pred hccCCEEEEEEcCC-CccCcHHHHHHHHHHHHHh-CCcEEEEEc--CCCCHHhh----cCC--CCCCEEEEecCCC
Q 020984 97 AKDANIIGVLVGTL-GVAGYLHMIHQMKELITKA-GKKAYTLVM--GKPNPAKL----ANF--PECDVFINVSCAQ 162 (319)
Q Consensus 97 a~~a~~iGIivgTl-~~q~~~~i~~~l~~ll~~~-Gkk~y~i~v--g~in~~KL----aNf--~eID~fV~iaCPr 162 (319)
.+...+||+|+... .-..+..+++.+++.++++ |....+... +.-++++. .++ ..+|.+|+.++..
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVP 80 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSG
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 34678999999998 7778889999999999999 888777664 44555442 222 3799999887653
No 60
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=52.60 E-value=19 Score=30.68 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=44.6
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCH-----HhhcCC-----CCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNP-----AKLANF-----PECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~-----~KLaNf-----~eID~fV~iaCP 161 (319)
-+||||++.....-.-.+++-.++.|+++|.+..++.|=--.+ .+|+.- ..+|++|-++|-
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~V 83 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTV 83 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeee
Confidence 6799999885444444777777788999996666666643332 566655 689999999997
No 61
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=52.41 E-value=23 Score=32.06 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=44.0
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEec
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVS 159 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~ia 159 (319)
+...+||+|+..+.-..+..+++.+++.++++|....+.....-.+++ |..+ ..+|.+|+.+
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 346899999988876777889999999999999887766555433332 2222 3699988874
No 62
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=51.93 E-value=15 Score=32.55 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=41.8
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCP 161 (319)
.+||+|+..++. .+..+++-+++.++++|.+..++..++-++++. ..+ ..+|.+|+.++.
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 67 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSD 67 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 478999888776 677888899999999997765544345555442 122 368998877654
No 63
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=51.88 E-value=24 Score=30.85 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=44.4
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEc-CCCCHHh----hcCC--CCCCEEEEecC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM-GKPNPAK----LANF--PECDVFINVSC 160 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~v-g~in~~K----LaNf--~eID~fV~iaC 160 (319)
+++||+|+..+.-..+..+++.+++.++++|....+... ..-++++ +..+ ..+|.+|+.+.
T Consensus 1 ~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 1 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578999999887777889999999999999987666542 3444433 2222 26999888654
No 64
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=51.27 E-value=21 Score=29.79 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=44.7
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHH-hCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCc
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITK-AGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQT 163 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~-~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~ 163 (319)
.++.||.++.. .+...+++.+.+.+++ .|.++-++-+.+.+.++|.. .|+ |+++||-.
T Consensus 5 ~kiliiy~S~~-GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~---aD~-ii~gsP~y 63 (188)
T 2ark_A 5 GKVLVIYDTRT-GNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLW---ADG-LAVGSPTN 63 (188)
T ss_dssp EEEEEEECCSS-SHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHH---CSE-EEEEEECB
T ss_pred CEEEEEEECCC-cHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHh---CCE-EEEEeCcc
Confidence 36889999953 4567899999999998 88888888899888777754 465 56677755
No 65
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=51.20 E-value=14 Score=32.27 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=42.2
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 160 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaC 160 (319)
++||+|+..+.-..+..+++.+++.++++|....+.. ..-++++ +.++ ..+|.+|+.++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVED-SQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5899999888777788999999999999998765543 3334433 2222 26999887654
No 66
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=51.18 E-value=28 Score=31.32 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=45.8
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc----CC--CCCCEEEEecCC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA----NF--PECDVFINVSCA 161 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa----Nf--~eID~fV~iaCP 161 (319)
.++||+|+..+.-..+..+++.+++.++++|....+... .-++++.. .+ ..+|.+|+++..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT-DYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC-TTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 578999999988888899999999999999988765543 33554322 11 269999987543
No 67
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=51.14 E-value=19 Score=31.09 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=43.8
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
+..++||+|+..+.-..+..+++.+++.++++|.+..++. ..-++++ +..+ ..+|.+|+.++.
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN-AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc-CCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3467899999887767777899999999999998766543 3345544 2222 369998887654
No 68
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=51.12 E-value=7.5 Score=34.29 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=43.4
Q ss_pred hccCCEEEEEE-----cCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 97 AKDANIIGVLV-----GTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 97 a~~a~~iGIiv-----gTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
.+..++||+|+ ..+.-..+..+++.+++.++++|....++... -++++ +..+ ..+|.+|++.+.
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSN-NMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCC-SHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCC-CChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 45678999999 45556677899999999999999876544332 22221 1122 379999887654
No 69
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=51.10 E-value=11 Score=32.69 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=43.1
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 160 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaC 160 (319)
++||+|+..+.-..+..+++.+++.++++|....+.. ..-++++ +..+ ..+|.+|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6899999988877888999999999999998766544 3334432 2222 26999887543
No 70
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=50.87 E-value=23 Score=31.78 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=46.5
Q ss_pred hccCCEEEEEEcC--CCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecCC
Q 020984 97 AKDANIIGVLVGT--LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSCA 161 (319)
Q Consensus 97 a~~a~~iGIivgT--l~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaCP 161 (319)
.+..++||+|+.. +....+..+++.+++.++++|....++. ..-++++- ..+ ..+|.+|+.+..
T Consensus 58 ~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 58 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp --CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE-CTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred hCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3457899999998 7777788999999999999998876655 34444432 222 279999887654
No 71
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=49.19 E-value=23 Score=30.84 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=42.9
Q ss_pred cCCEEEEEEcC-C---CccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHH----hhcCC--CCCCEEEEecCC
Q 020984 99 DANIIGVLVGT-L---GVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA----KLANF--PECDVFINVSCA 161 (319)
Q Consensus 99 ~a~~iGIivgT-l---~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~----KLaNf--~eID~fV~iaCP 161 (319)
..++||+|+.. + .-..+..+++.+++.++++|.+..++.. .-+++ .+..+ ..+|.+|+.++.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF-SEDRSQIDIYRDLIRSGNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC-CSSTTCCHHHHHHHHTTCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC-CCchHHHHHHHHHHHcCCCCEEEEeecC
Confidence 46789999988 7 6677889999999999999977544332 22221 12222 369998887653
No 72
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=49.11 E-value=21 Score=29.37 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=41.5
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 162 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr 162 (319)
.++.|+.+|.. -+...+++.|.+.|...|.++.++-+.+.++..|. +.|. |+++||-
T Consensus 10 ~ki~I~Y~S~t-GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~---~~d~-ii~g~pt 66 (167)
T 1ykg_A 10 PGITIISASQT-GNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIA---SEKL-LIVVTST 66 (167)
T ss_dssp --CEEEEECSS-SHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGG---GCSE-EEEEEEC
T ss_pred CeEEEEEECCc-hHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhc---cCCe-EEEEEcc
Confidence 35789999976 45678999999999999988888888877766554 4464 5556663
No 73
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=49.03 E-value=33 Score=26.69 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=45.5
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEE--cCCCCHHhhcCCCCCCEEEEecCCCcccc--cc----cCCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV--MGKPNPAKLANFPECDVFINVSCAQTALL--DS----KEFL 172 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~--vg~in~~KLaNf~eID~fV~iaCPr~sid--d~----~~f~ 172 (319)
++|-++.|+ |.. .--+++++++.++++|.++-+.. ++++.. .+ .+.|++++ -|..... +- .++.
T Consensus 4 kkIll~Cg~-G~s-TS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~-~~---~~~Dvil~--~pqv~~~~~~~~~~~~~~~ 75 (106)
T 1e2b_A 4 KHIYLFSSA-GMS-TSLLVSKMRAQAEKYEVPVIIEAFPETLAGE-KG---QNADVVLL--GPQIAYMLPEIQRLLPNKP 75 (106)
T ss_dssp EEEEEECSS-STT-THHHHHHHHHHHHHSCCSEEEEEECSSSTTH-HH---HHCSEEEE--CTTSGGGHHHHHHHSSSSC
T ss_pred cEEEEECCC-chh-HHHHHHHHHHHHHHCCCCeEEEEecHHHHHh-hc---cCCCEEEE--ccchhhhHHHHHHHhcCCC
Confidence 345444444 444 44789999999999999865554 344433 23 34676553 3666532 11 2367
Q ss_pred CcccCHHHHH
Q 020984 173 APVITPFEAM 182 (319)
Q Consensus 173 kPvlTP~El~ 182 (319)
-|+|.|..+.
T Consensus 76 v~vI~~~~yg 85 (106)
T 1e2b_A 76 VEVIDSLLYG 85 (106)
T ss_dssp CCBCCHHHHT
T ss_pred ceEECHHHcc
Confidence 8889987763
No 74
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=49.00 E-value=14 Score=32.97 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=41.3
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQ 162 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr 162 (319)
.++||+++..++-..+..+++.+++.++++|.+..+....+-++++ +.++ ..+|++|+.+...
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~ 71 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSP 71 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH
Confidence 4688999888776666788888888888888654432223445443 2222 2688888776543
No 75
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=48.16 E-value=18 Score=30.86 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=43.9
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEc-CCCCHHhh----cCC--CC-CCEEEEecCC
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVM-GKPNPAKL----ANF--PE-CDVFINVSCA 161 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~v-g~in~~KL----aNf--~e-ID~fV~iaCP 161 (319)
+||+|+.......+..+++.+++.++++|.+..++.. +.-++++- .++ .. +|.+|+.++.
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~ 69 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS 69 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 6899998888778889999999999999987665554 34555432 222 15 9998887763
No 76
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=47.69 E-value=71 Score=24.90 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=38.9
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEE--EEEcCCCCHHhhcCCCCCCEEEEecCCCcccccccCC-CCcccC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAY--TLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEF-LAPVIT 177 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y--~i~vg~in~~KLaNf~eID~fV~iaCPr~sidd~~~f-~kPvlT 177 (319)
+++ ++++.-|.....-+..+|++.+++.|.... ...+.++.. .+.++|+++.. |.+. ..| ..|++.
T Consensus 22 kkI-lvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----~~~~~DlIist--~~l~----~~~~~ipvi~ 90 (113)
T 1tvm_A 22 RKI-IVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----YMDGVHLICTT--ARVD----RSFGDIPLVH 90 (113)
T ss_dssp EEE-EEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----STTSCSEEEES--SCCC----CCSTTCCEEC
T ss_pred cEE-EEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----ccCCCCEEEEC--Cccc----cccCCCCEEE
Confidence 445 445554555555578999999999998743 333444422 24578854433 4332 245 568765
No 77
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=47.67 E-value=14 Score=31.64 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=43.6
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
.++||+|+..+.-..+..+++.+++.++++|.+..++... -++++ +..+ ..+|.+|+.++.
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgii~~~~~ 69 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSD-YSIEQEEKLLSTFLESRPAGVVLFGSE 69 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECT-TCHHHHHHHHHHHHTSCCCCEEEESSC
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCC-CCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5789999988877777899999999999999876655443 34432 2222 369998887654
No 78
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=47.25 E-value=27 Score=28.29 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=37.3
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 162 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr 162 (319)
++.|+.+|..+ +...+++.|.+.+... ..+-++-+.+..+..|. +.|. |+++||-
T Consensus 2 kilIvY~S~tG-nT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~---~~d~-ii~g~pt 56 (169)
T 1czn_A 2 KIGLFYGTQTG-VTQTIAESIQQEFGGE-SIVDLNDIANADASDLN---AYDY-LIIGCPT 56 (169)
T ss_dssp CEEEEECCSSS-HHHHHHHHHHHHHTST-TTEEEEEGGGCCGGGGG---GCSE-EEEECCE
T ss_pred eEEEEEECCCc-HHHHHHHHHHHHhCcc-cceEEEEhhhCCHhHHh---hCCE-EEEEecc
Confidence 57899999864 5668888888887543 35667777766655443 4565 5667774
No 79
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=45.91 E-value=52 Score=27.11 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=32.1
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP 141 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~i 141 (319)
.++.||.++.. .+...+++.+.+.+++.|.++-++-+.+.
T Consensus 6 ~kilii~~S~~-g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 45 (200)
T 2a5l_A 6 PYILVLYYSRH-GATAEMARQIARGVEQGGFEARVRTVPAV 45 (200)
T ss_dssp CEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEBCCCE
T ss_pred ceEEEEEeCCC-ChHHHHHHHHHHHHhhCCCEEEEEEhhhc
Confidence 47889999963 46678999999999999988777777663
No 80
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=45.83 E-value=13 Score=32.73 Aligned_cols=64 Identities=6% Similarity=-0.093 Sum_probs=44.4
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCC-CHHhhc----CC--CCCCEEEEecCCCc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP-NPAKLA----NF--PECDVFINVSCAQT 163 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~i-n~~KLa----Nf--~eID~fV~iaCPr~ 163 (319)
..+||+|+..+.-..+..+++-+++.++++|.+..++..... ++++.. ++ ..+|++|+..+...
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 73 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDT 73 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSS
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 357999999887777888999999999999987665554322 444322 22 26999888665433
No 81
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=45.63 E-value=30 Score=29.87 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=52.4
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCCC------CCCEEEEecCCCcccc--cccCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP------ECDVFINVSCAQTALL--DSKEF 171 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf~------eID~fV~iaCPr~sid--d~~~f 171 (319)
..++||+|+ ..-+.+++...+.|++-|..+-+-+++ .=+|++|..|. ++++||.+|==...+- -...-
T Consensus 12 ~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t 88 (170)
T 1xmp_A 12 SLVGVIMGS---TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 88 (170)
T ss_dssp CSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTC
T ss_pred CcEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhcc
Confidence 568999998 678899999999999999997777766 56788887664 3787776665555442 12233
Q ss_pred CCccc
Q 020984 172 LAPVI 176 (319)
Q Consensus 172 ~kPvl 176 (319)
..|||
T Consensus 89 ~~PVI 93 (170)
T 1xmp_A 89 NLPVI 93 (170)
T ss_dssp CSCEE
T ss_pred CCCEE
Confidence 45554
No 82
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=45.44 E-value=61 Score=28.95 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=46.4
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
+..++||+|+.......+..+++.+++.++++|.+..++. ..-++++ +..+ ..+|.+|+.++.
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN-AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4578999999887767778999999999999998766543 3445544 2222 379999887654
No 83
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=45.26 E-value=23 Score=30.84 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=35.9
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhh----cCC--CCCCEEEEecC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL----ANF--PECDVFINVSC 160 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KL----aNf--~eID~fV~iaC 160 (319)
..+||+|+...+...+..+++-+++.++++|.+..++....-++++. ..+ ..+|.+|+.+.
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45778877766555566777777777777775543333244454432 122 25777766544
No 84
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=45.24 E-value=80 Score=28.57 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=23.2
Q ss_pred CEEEEEEcCCCccCc-HHHHHHHHHHHHHhCCcEEEEEcCCCC
Q 020984 101 NIIGVLVGTLGVAGY-LHMIHQMKELITKAGKKAYTLVMGKPN 142 (319)
Q Consensus 101 ~~iGIivgTl~~q~~-~~i~~~l~~ll~~~Gkk~y~i~vg~in 142 (319)
+++.||++..++.+. .+++++++..|+++|.++.++......
T Consensus 9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~ 51 (304)
T 3s40_A 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQG 51 (304)
T ss_dssp SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTT
T ss_pred CEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcc
Confidence 456666666665554 345556666666666555444444333
No 85
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=45.19 E-value=26 Score=31.37 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC
Q 020984 86 ILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 139 (319)
Q Consensus 86 ~l~~R~~~I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg 139 (319)
.++.......+.+.+++|.|. + +||.|--.+.-.|-..|.++|+++.+|=++
T Consensus 27 ~l~~~l~~~~~~~~~~vI~v~-~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 27 SVQVHLDEADKITGAKVFAVY-G-KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp -------------CCEEEEEE-C-STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred hhhhhhccccccCCceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344444444566678899888 6 999999999999999999999999888776
No 86
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=45.12 E-value=49 Score=30.83 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=47.4
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc-CCCCCCEEEEecCCCc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 163 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa-Nf~eID~fV~iaCPr~ 163 (319)
.+++.|+.++.. .+...+++.+.+.+.+.|.++-++-+.+.+...+. .+.+.|+ |+++||..
T Consensus 256 ~~kv~iiy~S~~-GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~-iiigsP~y 318 (414)
T 2q9u_A 256 QKKVTVVLDSMY-GTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGA-VAFASPTL 318 (414)
T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSE-EEEECCCB
T ss_pred CCeEEEEEECCC-chHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCE-EEEEcCcc
Confidence 468899999975 46779999999999999988888888888765332 3456776 56677754
No 87
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=44.92 E-value=10 Score=33.50 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=44.9
Q ss_pred ccCCEEEEEEcC-----CCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGT-----LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgT-----l~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
+..++||+|+.. +....+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|++++.
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVS-ENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCC-SSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 457899999998 77777889999999999999987655433 333332 1112 379999987654
No 88
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=43.76 E-value=30 Score=28.00 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=37.5
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 162 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr 162 (319)
.++.||.++..+ +...+++.|.+.+... .+-++-+.+.+++.|. +.|+ |+++||-
T Consensus 2 mkilIiY~S~tG-nT~~vA~~ia~~l~~~--~v~~~~~~~~~~~~l~---~~d~-ii~g~p~ 56 (169)
T 1obo_A 2 KKIGLFYGTQTG-KTESVAEIIRDEFGND--VVTLHDVSQAEVTDLN---DYQY-LIIGCPT 56 (169)
T ss_dssp CSEEEEECCSSS-HHHHHHHHHHHHHCTT--TEEEEETTTCCGGGGG---GCSE-EEEEEEE
T ss_pred CeEEEEEECCCc-hHHHHHHHHHHHhCcC--CcEEEEcccCCHHHHh---hCCE-EEEEEee
Confidence 468899999864 5668888888877653 5666777776665443 4565 5556664
No 89
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=43.54 E-value=41 Score=28.40 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=44.2
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCc---EEEEEcCCCC-----HHhhcCCCCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVMGKPN-----PAKLANFPECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk---~y~i~vg~in-----~~KLaNf~eID~fV~iaCP 161 (319)
.+||||++.....-.-.+++..++.|+++|-+ ..++.|=-.. ..+|+.-..+|++|-++|.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~V 81 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVL 81 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 46999999855444447777778889999953 3555454322 2677777789999999997
No 90
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=43.32 E-value=32 Score=31.20 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=43.7
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
..++||+|+..+.-..+..+++.+++.++++|....++..+ -++++ +..+ ..+|.+|+.++.
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~ 132 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSN-EDATTMSGSLEFLTSHGVDGIICVPNE 132 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECT-TCHHHHHHHHHHHHHTTCSCEEECCCG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45789999988776777899999999999999987665543 34443 2222 369998887653
No 91
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=43.23 E-value=9.2 Score=38.97 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=47.2
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCC--CCEEEEecCC
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPE--CDVFINVSCA 161 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~e--ID~fV~iaCP 161 (319)
..+.+.|+.||.. -+...++++|.+.++++|.++.++-+.+.+.+.|..+++ .+. |++.||
T Consensus 17 ~~~~i~I~YgS~t-Gnte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~-vi~~~s 79 (618)
T 3qe2_A 17 TGRNIIVFYGSQT-GTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNAL-VVFCMA 79 (618)
T ss_dssp HTCSEEEEEECSS-SHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCE-EEEEEE
T ss_pred cCCeEEEEEECCh-hHHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcE-EEEEcC
Confidence 4567999999975 345678899999999999999888899999988877653 344 445555
No 92
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=43.18 E-value=60 Score=28.82 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=43.8
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
+...+||+|+..+....+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|+.++.
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS-DQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC-CSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-CCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 35689999998887777889999999999999988665543 333332 2333 369998887653
No 93
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=43.04 E-value=28 Score=31.09 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=45.1
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CC--CCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PE--CDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~e--ID~fV~iaCP 161 (319)
+...+||+|+..+....+..+++.+++.++++|.+..++.. .-++++ +..+ .. +|.+|+.++.
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT-EGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC-TTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC-CCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 34678999998887777789999999999999988765543 344433 2222 25 8998887654
No 94
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=42.53 E-value=22 Score=31.08 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=50.1
Q ss_pred HHhhccCCEEEEEEcC-CCccCcHHHHHHHHHHHHHhCCcEE---------------------------EEEcCCCCHHh
Q 020984 94 VEKAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAK 145 (319)
Q Consensus 94 I~ka~~a~~iGIivgT-l~~q~~~~i~~~l~~ll~~~Gkk~y---------------------------~i~vg~in~~K 145 (319)
.+..++|+.+-|+=|- +.+..-...+..|-++|+++|+++- ++-|.+||++
T Consensus 24 a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~d- 102 (186)
T 2bru_C 24 AELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDD- 102 (186)
T ss_dssp HHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSSTHHHHHHHHTCCTTTEEESCCCHHH-
T ss_pred HHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEecCCCHHHHhhHHHHhcc-
Confidence 3445567777555442 2233344556667777777777754 6789999986
Q ss_pred hcCCCCCCEEEEecCCCc----cccc--ccCCCCcccCH
Q 020984 146 LANFPECDVFINVSCAQT----ALLD--SKEFLAPVITP 178 (319)
Q Consensus 146 LaNf~eID~fV~iaCPr~----sidd--~~~f~kPvlTP 178 (319)
|++.|+.++|+-.-. +..| +--+-.|||..
T Consensus 103 ---f~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v 138 (186)
T 2bru_C 103 ---FADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEV 138 (186)
T ss_dssp ---HHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCC
T ss_pred ---cccCCEEEEeccccccCccccCCCCCCcCCCeeecc
Confidence 889999998875432 1222 22366677643
No 95
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=42.22 E-value=37 Score=29.51 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=42.7
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHH-------hhcCC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA-------KLANF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~-------KLaNf--~eID~fV~iaCP 161 (319)
+..++||+|+..+....+..+++-+++.++++|.+..++..+ -+++ .+..+ ..+|.+|+.++.
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGC-GESTPREQALEAVRFLIGRDCDGVVVISHD 77 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCC-SSSCHHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCC-CchhhhhhHHHHHHHHHhcCccEEEEecCC
Confidence 356799999988766677789999999999999876554433 2221 22222 269998887653
No 96
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=41.67 E-value=70 Score=29.43 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc-CCCCCCEEEEecCCCc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 163 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa-Nf~eID~fV~iaCPr~ 163 (319)
..++.|+.++.. .+...+++.+.+.+.+.|.++-++-+.+.....+. .+.+.|+ |+++||..
T Consensus 256 ~~k~~i~~~S~~-gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~-iiigsP~y 318 (404)
T 2ohh_A 256 DERVTVIYDTMH-GSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGA-IALGAPTI 318 (404)
T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSE-EEEECCEE
T ss_pred CCcEEEEEECCC-hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCE-EEEECccc
Confidence 467778888864 46779999999999988988888999988876443 3556776 56677754
No 97
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=41.12 E-value=19 Score=31.33 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=39.5
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCC-cEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAK----LANF--PECDVFINVSCAQ 162 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gk-k~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr 162 (319)
.++||+|+..+.-..+..+++.+++.++++|. +..++. ..-++++ +..+ ..+|.+|+.++..
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 70 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND-SQNDQSKQNDQIDVLLAKGVKALAINLVDP 70 (309)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSSG
T ss_pred CcEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEec-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 35788888877666677888888888888886 544433 3334432 2222 2688887766543
No 98
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=40.49 E-value=44 Score=32.77 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=49.2
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCCCC------C-CEEEEecCCCccc
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFPE------C-DVFINVSCAQTAL 165 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf~e------I-D~fV~iaCPr~si 165 (319)
.....+|||+|+ ..-+.+++.....|+..|..+-+-++| .=+|++|..|.+ + +++|.+|==..++
T Consensus 263 ~~~~~V~Ii~gs---~SD~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~L 335 (425)
T 2h31_A 263 ESQCRVVVLMGS---TSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGL 335 (425)
T ss_dssp SCCCEEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCH
T ss_pred cCCCeEEEEecC---cccHHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccch
Confidence 344689999998 668899999999999999997777766 677999887743 5 5666655444443
No 99
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Probab=40.04 E-value=83 Score=31.88 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=50.3
Q ss_pred eEEEEcCCcchHHHHHHhc-------CCCeEEEEcCCCCccccccCcHHHHHHHHHHHHHhhccCCEEEEEEcCCCccC-
Q 020984 43 LLFWIGSDNSAFANVVLTF-------NGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAG- 114 (319)
Q Consensus 43 ~i~~Ig~~~~~l~~l~l~~-------~~~~v~~yDP~s~~~~~e~~~~~k~l~~R~~~I~ka~~a~~iGIivgTl~~q~- 114 (319)
.||+||-|...|-..|+.. +..+++-+|-.... .+. .+.+..+.++.-+||.++++.-
T Consensus 151 ~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~----------~i~----~~l~~L~~e~TLvIViSKSGtT~ 216 (557)
T 2cxn_A 151 DIINIGIGGSDLGPLMVTEALKPYSKGGPRVWFVSNIDGT----------HIA----KTLASLSPETSLFIIASKTFTTQ 216 (557)
T ss_dssp EEEEECCGGGTHHHHHHHHHTGGGGTTSCEEEEECCSSHH----------HHH----HHHTTCCTTTEEEEEECSSSCCH
T ss_pred eEEEEeccchHHHHHHHHHHHhhhccCCCeEEEEecCCHH----------HHH----HHHhcCCCCcEEEEEEcCCCCCh
Confidence 6899998887765433221 23445544321111 111 1233334555557777777633
Q ss_pred -cHHHHHHHHHHHHHh-CC-----cEEEEEcCCCCHHhhcCCCCCC---EEEE
Q 020984 115 -YLHMIHQMKELITKA-GK-----KAYTLVMGKPNPAKLANFPECD---VFIN 157 (319)
Q Consensus 115 -~~~i~~~l~~ll~~~-Gk-----k~y~i~vg~in~~KLaNf~eID---~fV~ 157 (319)
....++.+++.+.++ |+ +.++.+.+.. .+++.| .|| +|..
T Consensus 217 ETl~na~~ar~~l~~~~G~~~~~~~h~VavTt~~--s~~~~~-gi~~~~~F~~ 266 (557)
T 2cxn_A 217 ETITNAETAKEWFLEAAKDPSAVAKHFVALSTNT--AKVKEF-GIDPQNMFEF 266 (557)
T ss_dssp HHHHHHHHHHHHHHHHHCCGGGGGGTEEEEESCH--HHHHHH-TCCGGGEEEC
T ss_pred hHHHHHHHHHHHHHHhcCccchhcCEEEEEeCCc--HHHHHc-CCCcccEEEe
Confidence 334455666666655 62 3344444443 666666 455 7765
No 100
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=39.80 E-value=58 Score=28.99 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=45.1
Q ss_pred ccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecC
Q 020984 98 KDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSC 160 (319)
Q Consensus 98 ~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaC 160 (319)
+...+||+|+..+....+..+++.+++.++++|....++.. .-++++ +..+ ..+|.+|+.++
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-DNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-CCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45689999998877677789999999999999988765543 334432 2222 37999888765
No 101
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=39.73 E-value=28 Score=29.29 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=33.8
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP 141 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~i 141 (319)
..++-||.++. ..+...+++.+.+.+++.|.++-++-+.+.
T Consensus 6 mmkilii~~S~-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 6 PVKLAIVFYSS-TGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CCEEEEEECCS-SSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CCeEEEEEECC-CChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 45788999998 346778999999999999998888888764
No 102
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=37.84 E-value=44 Score=28.21 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=43.5
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCc---EEEEEcCCCC-----HHhhcCCCCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVMGKPN-----PAKLANFPECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk---~y~i~vg~in-----~~KLaNf~eID~fV~iaCP 161 (319)
.+||||++.....-.-.+++..++.|+++|-+ ..++.|=-.. ..+|+.-..+|++|-++|.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 81 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTV 81 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 46999999855444447777778889999853 3455444322 2677777789999999997
No 103
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=37.79 E-value=25 Score=30.57 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=48.0
Q ss_pred HhhccCCEEEEEEcC-CCccCcHHHHHHHHHHHHHhCCcEE---------------------------EEEcCCCCHHhh
Q 020984 95 EKAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAKL 146 (319)
Q Consensus 95 ~ka~~a~~iGIivgT-l~~q~~~~i~~~l~~ll~~~Gkk~y---------------------------~i~vg~in~~KL 146 (319)
+..++|+.+-|+-|- +.+..-...+..|-++|+++|+++- ++-|.+||++
T Consensus 18 ~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhmNVLLAEA~VPYd~v~EMdeIN~d-- 95 (180)
T 1pno_A 18 FIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSS-- 95 (180)
T ss_dssp HHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTTHHHHHHHHTTCCGGGEEEHHHHGGG--
T ss_pred HHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEeeCCCHHHHhhHHHHhhh--
Confidence 344566666555442 2223334455556666666666643 6678888875
Q ss_pred cCCCCCCEEEEecCCCcc----ccc--ccCCCCcccCHHH
Q 020984 147 ANFPECDVFINVSCAQTA----LLD--SKEFLAPVITPFE 180 (319)
Q Consensus 147 aNf~eID~fV~iaCPr~s----idd--~~~f~kPvlTP~E 180 (319)
|++.|+.++|+-.... ..| +--+-.|||..++
T Consensus 96 --f~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~k 133 (180)
T 1pno_A 96 --FQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEK 133 (180)
T ss_dssp --GGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGG
T ss_pred --hhhcCEEEEeccccccCchhccCCCCCcCCCeeechhh
Confidence 9999999998865332 222 2236677765443
No 104
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=37.17 E-value=22 Score=31.49 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=42.9
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCC----cEEEEE-cCCCCHHhhcC----C--CCCCEEEEecCC
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGK----KAYTLV-MGKPNPAKLAN----F--PECDVFINVSCA 161 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gk----k~y~i~-vg~in~~KLaN----f--~eID~fV~iaCP 161 (319)
..++||||. .+....+..+++-+++.++++|. ...+++ -.+=++++..+ | ..+|..|.++-+
T Consensus 7 ~t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~ 79 (302)
T 2qh8_A 7 KTAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP 79 (302)
T ss_dssp CCEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH
T ss_pred CCcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH
Confidence 578999884 66667788999999999999998 544433 34545544332 2 269998877543
No 105
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=37.02 E-value=43 Score=29.07 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=43.0
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
.+||+|+..+.-..+..+++-+++.++++|.+..++... ++++ +.++ ..+|.+|+.++.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~i~~l~~~~vdgiii~~~~ 67 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAIDSLAASGAKGFVICTPD 67 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC--SHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC--CHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 478999998887788899999999999999777555442 5543 2222 268998887653
No 106
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=36.43 E-value=28 Score=28.91 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=32.2
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP 141 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~i 141 (319)
.++-||.++ ..+...+++.+.+.+++.|.++-++-+.+.
T Consensus 5 mkilii~~S--~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG--YGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC--SSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC--ccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 468899999 346778999999999999998888887764
No 107
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=36.17 E-value=46 Score=28.20 Aligned_cols=61 Identities=5% Similarity=-0.080 Sum_probs=43.4
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCc---EEEEEcCCCC-----HHhhcCCCCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVMGKPN-----PAKLANFPECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk---~y~i~vg~in-----~~KLaNf~eID~fV~iaCP 161 (319)
.+||||++.....-.-.+++..++.|+++|-+ ..++.|=-.. ..+|+.-..+|++|-++|.
T Consensus 11 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 79 (158)
T 1di0_A 11 FKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFV 79 (158)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeecc
Confidence 46999999855444447777778889998854 3444444322 2677777789999999998
No 108
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=36.13 E-value=27 Score=30.42 Aligned_cols=81 Identities=26% Similarity=0.324 Sum_probs=46.9
Q ss_pred hhccCCEEEEEEcC-CCccCcHHHHHHHHHHHHHhCCcEE---------------------------EEEcCCCCHHhhc
Q 020984 96 KAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAKLA 147 (319)
Q Consensus 96 ka~~a~~iGIivgT-l~~q~~~~i~~~l~~ll~~~Gkk~y---------------------------~i~vg~in~~KLa 147 (319)
..++|+.+-|+=|- +.+..-...+..|-++|+++|+++- ++-|.+||++
T Consensus 18 ~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~d--- 94 (184)
T 1d4o_A 18 MIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHD--- 94 (184)
T ss_dssp HHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHHTCCGGGEEEHHHHGGG---
T ss_pred HHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEEecCCHHHHHhHHHHhhh---
Confidence 34456666555441 2223334445555566666666542 7778888875
Q ss_pred CCCCCCEEEEecCCCcc----ccc--ccCCCCcccCHHH
Q 020984 148 NFPECDVFINVSCAQTA----LLD--SKEFLAPVITPFE 180 (319)
Q Consensus 148 Nf~eID~fV~iaCPr~s----idd--~~~f~kPvlTP~E 180 (319)
|++.|+.++|+-.-.. ..| +--+-.|||..++
T Consensus 95 -f~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~k 132 (184)
T 1d4o_A 95 -FPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK 132 (184)
T ss_dssp -GGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGG
T ss_pred -hhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhh
Confidence 9999999988765322 222 2236677765443
No 109
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=35.87 E-value=91 Score=26.49 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=51.2
Q ss_pred EEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC-CCCHHhhcCCC---CCCEEEEecCCCcccc--cccCCCCccc
Q 020984 103 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG-KPNPAKLANFP---ECDVFINVSCAQTALL--DSKEFLAPVI 176 (319)
Q Consensus 103 iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg-~in~~KLaNf~---eID~fV~iaCPr~sid--d~~~f~kPvl 176 (319)
++||+|+ ..-+.+.+...+.|++.|..+-+-++| .=+|++|..|. +-++||.+|==...+- -...-..|||
T Consensus 2 V~Iimgs---~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvva~~t~~PVI 78 (157)
T 2ywx_A 2 ICIIMGS---ESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVASLTTKPVI 78 (157)
T ss_dssp EEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHHHTTCSSCEE
T ss_pred EEEEEcc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHHHhccCCCEE
Confidence 7899988 678899999999999999997776665 66788888772 2288877765555543 1233455654
No 110
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=35.72 E-value=33 Score=30.35 Aligned_cols=83 Identities=19% Similarity=0.321 Sum_probs=51.5
Q ss_pred HHhhccCCEEEEEEcC-CCccCcHHHHHHHHHHHHHhCCcEE---------------------------EEEcCCCCHHh
Q 020984 94 VEKAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAK 145 (319)
Q Consensus 94 I~ka~~a~~iGIivgT-l~~q~~~~i~~~l~~ll~~~Gkk~y---------------------------~i~vg~in~~K 145 (319)
.+..++|+.+-|+=|- +.+..-...+..|-++|+++|+++- ++-|.+||++
T Consensus 40 a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~d- 118 (203)
T 2fsv_C 40 AFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSS- 118 (203)
T ss_dssp HHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGG-
T ss_pred HHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccccCCCCCccEEEEEecCCHHHHhhHHHHhhh-
Confidence 3445567777666542 2233344555667777777777753 6778888875
Q ss_pred hcCCCCCCEEEEecCCCcc----ccc--ccCCCCcccCHHH
Q 020984 146 LANFPECDVFINVSCAQTA----LLD--SKEFLAPVITPFE 180 (319)
Q Consensus 146 LaNf~eID~fV~iaCPr~s----idd--~~~f~kPvlTP~E 180 (319)
|++.|+.++|+-.... ..| +--+-.|||..++
T Consensus 119 ---f~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k 156 (203)
T 2fsv_C 119 ---FQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWK 156 (203)
T ss_dssp ---STTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGG
T ss_pred ---hhhcCEEEEeccccccCchhhcCCCCCcCCCeeecccc
Confidence 9999999998865332 222 2236677775443
No 111
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=35.44 E-value=73 Score=28.48 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=41.9
Q ss_pred CCEEEEEEcCCCc-cCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC----CCCCEEEEec
Q 020984 100 ANIIGVLVGTLGV-AGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF----PECDVFINVS 159 (319)
Q Consensus 100 a~~iGIivgTl~~-q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf----~eID~fV~ia 159 (319)
..+||+|+..... ..+..+++-+++.+++.|.+..++. ..-++++ +.++ ..+|++|+++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY-AERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE-CCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4689999988765 5567888899999999998866654 4445544 2222 3789988865
No 112
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=35.06 E-value=31 Score=30.30 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=39.7
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCAQ 162 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCPr 162 (319)
.+||+|+...+-..+..+++-+++.++++|....++. ..-++++ +..+ ..+|.+|+.++..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 69 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD-GQQKQENQIKAVRSFVAQGVDAIFIAPVVA 69 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 5788888886555566778888888888887765543 3334433 2222 2688888776543
No 113
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=34.66 E-value=1.1e+02 Score=27.89 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=35.1
Q ss_pred CEEEEEEcCCCccCc-HHHHHHHHHHHHHhCCcEEEEEcCCCCHH-hhc---CCCCCCEEEEec
Q 020984 101 NIIGVLVGTLGVAGY-LHMIHQMKELITKAGKKAYTLVMGKPNPA-KLA---NFPECDVFINVS 159 (319)
Q Consensus 101 ~~iGIivgTl~~q~~-~~i~~~l~~ll~~~Gkk~y~i~vg~in~~-KLa---Nf~eID~fV~ia 159 (319)
++++||++..++.+. ..+++.+++.|+++|.++.++.-.....+ .++ .-.++|+.|.++
T Consensus 25 ~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~G 88 (337)
T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAG 88 (337)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEE
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEc
Confidence 567788887777654 36677777888877776665554443322 111 123567766553
No 114
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=33.58 E-value=1.4e+02 Score=27.43 Aligned_cols=62 Identities=8% Similarity=0.109 Sum_probs=45.8
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc-CCCCCCEEEEecCCCc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCAQT 163 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa-Nf~eID~fV~iaCPr~ 163 (319)
.+++.|+-++.. .+...+++.+.+.+++.|..+-++-+.+.....+. .+.+.|+ |+++||-.
T Consensus 252 ~~kv~i~y~S~~-Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~-ii~gsp~~ 314 (402)
T 1e5d_A 252 TNKVVIFYDSMW-HSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGA-VIVGSPTH 314 (402)
T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSE-EEEECCCB
T ss_pred CCcEEEEEECCC-hhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCE-EEEECCcc
Confidence 478888888863 34567889999999998988888888888877653 3556776 55666644
No 115
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=33.53 E-value=43 Score=28.39 Aligned_cols=61 Identities=5% Similarity=0.007 Sum_probs=43.0
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCC--cEEEEEcCCCC-----HHhhcCCCCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGK--KAYTLVMGKPN-----PAKLANFPECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gk--k~y~i~vg~in-----~~KLaNf~eID~fV~iaCP 161 (319)
.+||||++.....-.-.+++-.++.|+++|- ...++.|=--. ..+|+.-.++|++|-++|-
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 81 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAV 81 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 4699999885444444777777888999995 34455443222 3677777789999999997
No 116
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=32.20 E-value=92 Score=29.94 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=46.5
Q ss_pred CCEEEEEEcCCCc--cCcHHHHHHHHHHHHHhCC-cEEEEEcCCCCHHhhcCCCC-CCEEE
Q 020984 100 ANIIGVLVGTLGV--AGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAKLANFPE-CDVFI 156 (319)
Q Consensus 100 a~~iGIivgTl~~--q~~~~i~~~l~~ll~~~Gk-k~y~i~vg~in~~KLaNf~e-ID~fV 156 (319)
++..||-+-+.+. ..-..+++++++.|.++|. ++.+++.|.||++++..+.+ ||+|-
T Consensus 233 ~~~d~IrlDs~~~~~gd~~~~v~~~r~~ld~~G~~~~~I~aSggl~~~~i~~l~~~vD~~g 293 (395)
T 2i14_A 233 KKLFAVRLDTPSSRRGNFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVDAFG 293 (395)
T ss_dssp GGCCEEEECCCTTTCSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGGCSEEE
T ss_pred cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHhCCEEE
Confidence 5678888888765 6667889999999999884 46888899999999998753 88775
No 117
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=31.98 E-value=96 Score=31.78 Aligned_cols=59 Identities=8% Similarity=-0.040 Sum_probs=46.1
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHH-HhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCC
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELIT-KAGKKAYTLVMGKPNPAKLANFPECDVFINVSCA 161 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~-~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCP 161 (319)
..+.+.|+.+|..| +...++++|.+.|+ +.|.++.++-|.+..++.|.+++ |.+|+ .||
T Consensus 48 ~~~ki~IlY~S~tG-nte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~--~~vi~-~~s 107 (682)
T 2bpo_A 48 NNKNYLVLYASQTG-TAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVP--VIVSI-FIS 107 (682)
T ss_dssp TTCSEEEEEECSSS-HHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCC--SEEEE-EEE
T ss_pred CCCeEEEEEECCch-HHHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcC--CeEEE-EeC
Confidence 34679999999864 45689999999998 88999999999999988887653 55444 444
No 118
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=31.71 E-value=54 Score=28.71 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=41.9
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCC---cEEEEEc-CCCCHHhhc----CC--CCCCEEEEecCC
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGK---KAYTLVM-GKPNPAKLA----NF--PECDVFINVSCA 161 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gk---k~y~i~v-g~in~~KLa----Nf--~eID~fV~iaCP 161 (319)
.++|||| -.+.-..+..+++-+++.++++|. ...+++. .+=++++.. .| ..+|..|.++.+
T Consensus 2 ~~~Igvi-~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~ 72 (295)
T 3lft_A 2 NAKIGVL-QFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATP 72 (295)
T ss_dssp CEEEEEE-ECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESHH
T ss_pred ceEEEEE-EccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCcH
Confidence 3689988 456556778999999999999998 7555433 444554432 12 269998887654
No 119
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=31.64 E-value=71 Score=26.19 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=32.3
Q ss_pred CEEEEEEcCCCc--cCcHHHHHHHHHHHHHhC--CcEEEEEcCCC
Q 020984 101 NIIGVLVGTLGV--AGYLHMIHQMKELITKAG--KKAYTLVMGKP 141 (319)
Q Consensus 101 ~~iGIivgTl~~--q~~~~i~~~l~~ll~~~G--kk~y~i~vg~i 141 (319)
.++.||.|+... .+...+++.+.+.++++| -++.++-+.+.
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 367889999874 567789999999999987 67777777664
No 120
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=31.30 E-value=74 Score=27.01 Aligned_cols=59 Identities=7% Similarity=0.079 Sum_probs=40.8
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCC-cEEEEEcCCCC-----HHhhcCCCCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGK-KAYTLVMGKPN-----PAKLANFPECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gk-k~y~i~vg~in-----~~KLaNf~eID~fV~iaCP 161 (319)
.+||||++.....-.-.+++..++.|+++|- ...++.|=-.. ..+|+. .+|++|-++|.
T Consensus 18 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~--~yDavIaLG~V 82 (160)
T 2c92_A 18 VRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELAR--NHDAVVALGVV 82 (160)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHT--SCSEEEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHh--cCCEEEEEeee
Confidence 4699999985544444777777888999986 44444443222 256664 59999999997
No 121
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=31.30 E-value=88 Score=25.58 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=31.5
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHH-hCCcEEEEEcCCC
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITK-AGKKAYTLVMGKP 141 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~-~Gkk~y~i~vg~i 141 (319)
++.||.++. ..+...+++.+.+.+++ .|.++-++-+.+.
T Consensus 3 kilii~~S~-~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~ 42 (198)
T 3b6i_A 3 KVLVLYYSM-YGHIETMARAVAEGASKVDGAEVVVKRVPET 42 (198)
T ss_dssp EEEEEECCS-SSHHHHHHHHHHHHHHTSTTCEEEEEECCCC
T ss_pred eEEEEEeCC-CcHHHHHHHHHHHHHhhcCCCEEEEEEcccc
Confidence 578889994 34567899999999998 8988888888764
No 122
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=31.23 E-value=80 Score=30.39 Aligned_cols=70 Identities=17% Similarity=0.017 Sum_probs=50.3
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCcc---cccccCCCCccc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTA---LLDSKEFLAPVI 176 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~s---idd~~~f~kPvl 176 (319)
...|-|| |.+ ....++.|+++|++.|.++..+.-+. +.+.|.+.++.++-+++ ||... -.. +.|..|.+
T Consensus 183 ~~~VNil-G~~----~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~~~A~~niv~-~~~~~~~A~~L-e~~GiP~i 254 (437)
T 3aek_A 183 AAELIVV-GAL----PDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAVGPNTRFILA-QPFLGETTGAL-ERRGAKRI 254 (437)
T ss_dssp CCCEEEE-SCC----CHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCBCTTCEEEES-STTCHHHHHHH-HHTTCEEC
T ss_pred CCcEEEE-eCC----ChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhhhcCcEEEEE-CccHHHHHHHH-HHcCCCeE
Confidence 4455444 433 44556899999999999999988888 99999999888876666 88752 112 55666644
Q ss_pred C
Q 020984 177 T 177 (319)
Q Consensus 177 T 177 (319)
.
T Consensus 255 ~ 255 (437)
T 3aek_A 255 A 255 (437)
T ss_dssp C
T ss_pred e
Confidence 3
No 123
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=30.80 E-value=69 Score=27.42 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=41.4
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCc---EEEEEcCCCC-----HHhhcC-----CCCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVMGKPN-----PAKLAN-----FPECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk---~y~i~vg~in-----~~KLaN-----f~eID~fV~iaCP 161 (319)
-+||||++.....-.-.+++-.++.|+++|-+ ..++.|=-.. ..+|+. ...+|++|-++|.
T Consensus 17 ~ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~V 90 (168)
T 1ejb_A 17 IRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVL 90 (168)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEeccc
Confidence 36999998854444447777778888899853 3444443222 256665 5579999999997
No 124
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=30.79 E-value=34 Score=27.73 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=36.0
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEE-cCCCCHHhhcC-CCCCCEEEEecCC
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV-MGKPNPAKLAN-FPECDVFINVSCA 161 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~-vg~in~~KLaN-f~eID~fV~iaCP 161 (319)
.--+|+|. +.....+.+++++++.+ .+.+ .|.++.+.+.. +...|++|..+-.
T Consensus 71 ~~l~i~G~----~~~~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~ 125 (200)
T 2bfw_A 71 MRFIIIGK----GDPELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYF 125 (200)
T ss_dssp EEEEEECC----BCHHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCSC
T ss_pred eEEEEECC----CChHHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCCC
Confidence 33455654 33345677888888877 4455 99999877765 5679999985543
No 125
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=30.56 E-value=42 Score=32.40 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=46.1
Q ss_pred CEEEEEEcCCCc--cCcHHHHHHHHHHHHHhCC-cEEEEEcCCCCHHhhcCCC--CCCEEEE
Q 020984 101 NIIGVLVGTLGV--AGYLHMIHQMKELITKAGK-KAYTLVMGKPNPAKLANFP--ECDVFIN 157 (319)
Q Consensus 101 ~~iGIivgTl~~--q~~~~i~~~l~~ll~~~Gk-k~y~i~vg~in~~KLaNf~--eID~fV~ 157 (319)
+..||-+-+.+. ..-..+++++++.|.++|. ++.+++.|.||++++..+. .+|+|-+
T Consensus 236 ~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~G~~~~~I~aSggl~~~~i~~l~~~GvD~~gv 297 (398)
T 2i1o_A 236 KVDYIRLDTPSSRRGNFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGV 297 (398)
T ss_dssp CCCEEEECCCGGGCSCHHHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHcCCCEEEe
Confidence 677888888765 5667889999999999883 4688999999999999775 5888863
No 126
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=30.53 E-value=49 Score=29.53 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=34.4
Q ss_pred CCEEEEEEcCCCcc-CcHHHHHHHHHHHHHhCCcEEEEEcCCCC
Q 020984 100 ANIIGVLVGTLGVA-GYLHMIHQMKELITKAGKKAYTLVMGKPN 142 (319)
Q Consensus 100 a~~iGIivgTl~~q-~~~~i~~~l~~ll~~~Gkk~y~i~vg~in 142 (319)
..+|.||.|+.... ++..+++.+.+.+++.|.++-++-+.++.
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~p 77 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLP 77 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCC
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCC
Confidence 35788999998643 45588899999999889988888888765
No 127
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=30.19 E-value=77 Score=26.83 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=42.8
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhC-C---cEEEEEcCCCC-----HHhhcCCCCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAG-K---KAYTLVMGKPN-----PAKLANFPECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~G-k---k~y~i~vg~in-----~~KLaNf~eID~fV~iaCP 161 (319)
.+||||++.....-.-.+++...+.|+++| - ..-++.|=--. ..+|+.-.++|++|-++|-
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 82 (156)
T 3nq4_A 13 ARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTV 82 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeee
Confidence 469999988544444477777788899999 4 45555454332 3566655679999999997
No 128
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=29.89 E-value=77 Score=25.97 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=36.7
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 162 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr 162 (319)
++.|+.+|..+ +...+++.|.+.|... .+-++-+.+..+..|.++ |. |+++||-
T Consensus 2 ki~IvY~S~tG-nT~~iA~~Ia~~l~~~--~v~i~~~~~~~~~~l~~~---d~-ii~g~pt 55 (175)
T 1ag9_A 2 ITGIFFGSDTG-NTENIAKMIQKQLGKD--VADVHDIAKSSKEDLEAY---DI-LLLGIPT 55 (175)
T ss_dssp CEEEEECCSSS-HHHHHHHHHHHHHCTT--TEEEEEGGGCCHHHHHTC---SE-EEEECCE
T ss_pred EEEEEEECCCc-hHHHHHHHHHHHhccC--ceEEEEcccCChhHhhhC---CE-EEEEEee
Confidence 47889999763 4567888888877643 455666777777666544 54 6677773
No 129
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=29.59 E-value=35 Score=30.31 Aligned_cols=83 Identities=27% Similarity=0.343 Sum_probs=49.9
Q ss_pred HHhhccCCEEEEEEcC-CCccCcHHHHHHHHHHHHHhCCcEE---------------------------EEEcCCCCHHh
Q 020984 94 VEKAKDANIIGVLVGT-LGVAGYLHMIHQMKELITKAGKKAY---------------------------TLVMGKPNPAK 145 (319)
Q Consensus 94 I~ka~~a~~iGIivgT-l~~q~~~~i~~~l~~ll~~~Gkk~y---------------------------~i~vg~in~~K 145 (319)
.+..++|+.+-|+-|- +.+..-...+..|-++|+++|+++- ++-|.+||++
T Consensus 39 a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~d- 117 (207)
T 1djl_A 39 IDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHD- 117 (207)
T ss_dssp HHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGG-
T ss_pred HHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCCCCCcEEEEEeCCCHHHHhhHHHHhhh-
Confidence 3445567777666542 2233334555566667777776643 7778888875
Q ss_pred hcCCCCCCEEEEecCCCcc----ccc--ccCCCCcccCHHH
Q 020984 146 LANFPECDVFINVSCAQTA----LLD--SKEFLAPVITPFE 180 (319)
Q Consensus 146 LaNf~eID~fV~iaCPr~s----idd--~~~f~kPvlTP~E 180 (319)
|++.|+.++|+-.-.. ..| +--+-.|||..++
T Consensus 118 ---f~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k 155 (207)
T 1djl_A 118 ---FPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK 155 (207)
T ss_dssp ---GGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGG
T ss_pred ---hhhcCEEEEeccccccCCccccCCCCCccCCeeeccee
Confidence 9999999998864321 112 2236677765443
No 130
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=29.31 E-value=55 Score=27.70 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=42.8
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCc---EEEEEcCCCC-----HHhhcCCCCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKK---AYTLVMGKPN-----PAKLANFPECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk---~y~i~vg~in-----~~KLaNf~eID~fV~iaCP 161 (319)
.+||||++.....-.-.+++-..+.|+++|-+ ..++.|=-.. ..+|+.-.++|++|-++|.
T Consensus 12 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 80 (157)
T 2obx_A 12 VRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFV 80 (157)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEEC
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeecc
Confidence 36999999855444447777778888888854 3444443322 2567766789999999998
No 131
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=29.22 E-value=51 Score=27.62 Aligned_cols=42 Identities=7% Similarity=0.095 Sum_probs=33.6
Q ss_pred EEEEEEcCCCc-cCcHHHHHHHHHH-HHHhCCcEEEEEcCCCCH
Q 020984 102 IIGVLVGTLGV-AGYLHMIHQMKEL-ITKAGKKAYTLVMGKPNP 143 (319)
Q Consensus 102 ~iGIivgTl~~-q~~~~i~~~l~~l-l~~~Gkk~y~i~vg~in~ 143 (319)
++.||.|+... .+...+++.+.+. ++++|.++-++-+.+++.
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~ 47 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDP 47 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCc
Confidence 57899999753 4567899999998 998898888888887753
No 132
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=29.15 E-value=59 Score=27.65 Aligned_cols=61 Identities=8% Similarity=-0.063 Sum_probs=42.0
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHH-hCCc---EEEEEcCCCC-----HHhhcCCCCCCEEEEecCC
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITK-AGKK---AYTLVMGKPN-----PAKLANFPECDVFINVSCA 161 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~-~Gkk---~y~i~vg~in-----~~KLaNf~eID~fV~iaCP 161 (319)
-+||||++.....-.-.+++..++.|++ +|-+ .-++.|=--. ..+|+....+|++|-++|-
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~V 87 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVL 87 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 3699999885444444677777788888 8853 4455444322 2567766789999999997
No 133
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=29.10 E-value=36 Score=29.41 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=42.1
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
...+||+|+.. .-..+..+++.+++.++++|.+..++.. .-++++ +..+ ..+|.+|+.++.
T Consensus 7 ~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 7 RSNIIAFIVPD-QNPFFTEVLTEISHECQKHHLHVAVASS-EENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp CEEEEEEEESS-CCHHHHHHHHHHHHHHGGGTCEEEEEEC-TTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCEEEEEECC-CCchHHHHHHHHHHHHHHCCCEEEEEeC-CCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 45689999987 5556678889999999999987665543 345443 2222 368988887654
No 134
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=28.50 E-value=1e+02 Score=28.25 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=35.4
Q ss_pred CEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHH-hhc-CC--CCCCEEEEec
Q 020984 101 NIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA-KLA-NF--PECDVFINVS 159 (319)
Q Consensus 101 ~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~-KLa-Nf--~eID~fV~ia 159 (319)
++++||++..++.+ +.++.+.+.|+++|.++.+........+ .++ .. .++|+.|.++
T Consensus 30 ~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~G 90 (332)
T 2bon_A 30 PASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGG 90 (332)
T ss_dssp CCEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEE
T ss_pred ceEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEc
Confidence 56888888887776 5677788888888887666554433322 111 11 2467776553
No 135
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=27.98 E-value=1.5e+02 Score=24.09 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=46.4
Q ss_pred HHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEE-cCCCCHHhhcCCCCCCEEEEecCCCcc
Q 020984 94 VEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLV-MGKPNPAKLANFPECDVFINVSCAQTA 164 (319)
Q Consensus 94 I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~-vg~in~~KLaNf~eID~fV~iaCPr~s 164 (319)
++...+|++| +++|. .....+...+...|...|+.++.+. -+..-...+.++.+=|++|.++-...+
T Consensus 33 ~~~i~~a~~I-~i~G~---G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t 100 (187)
T 3sho_A 33 VEAICRADHV-IVVGM---GFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYL 100 (187)
T ss_dssp HHHHHHCSEE-EEECC---GGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCC
T ss_pred HHHHHhCCEE-EEEec---CchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCC
Confidence 3344556665 55555 3466788889999999999988876 222223456678788999999887664
No 136
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=27.75 E-value=55 Score=28.82 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=43.9
Q ss_pred ccCCEEEEEEcCCCc-----cCcHHHHHHHHHHHHHhCCcEEEEEcCC-CCHHhh-cCCCCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTLGV-----AGYLHMIHQMKELITKAGKKAYTLVMGK-PNPAKL-ANFPECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl~~-----q~~~~i~~~l~~ll~~~Gkk~y~i~vg~-in~~KL-aNf~eID~fV~iaCP 161 (319)
....++-||.|+... ..+..+++.+.+.+++.|.++.++-+.+ +..+++ ..+.+.|++|+. .|
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~-~P 92 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ-MP 92 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE-EE
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE-CC
Confidence 344678899999842 3456889999999999999999999874 443333 245567775544 44
No 137
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=27.57 E-value=1.5e+02 Score=22.27 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhc---cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC
Q 020984 87 LKRRYYLVEKAK---DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 139 (319)
Q Consensus 87 l~~R~~~I~ka~---~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg 139 (319)
|.|-..-++||. .|+.+-|-++.-.-..-.++++.+.++|++.|.|-.-+-|+
T Consensus 31 leralqelekalaragarnvqitisaendeqakelleliarllqklgykdinvrvn 86 (96)
T 2jvf_A 31 LERALQELEKALARAGARNVQITISAENDEQAKELLELIARLLQKLGYKDINVRVN 86 (96)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEEc
Confidence 444444556654 48999999998777777899999999999999997766554
No 138
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=27.56 E-value=1.6e+02 Score=27.40 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=44.8
Q ss_pred HHhhccCCEEEEEEcCCCcc-CcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCC--------------------CC
Q 020984 94 VEKAKDANIIGVLVGTLGVA-GYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--------------------EC 152 (319)
Q Consensus 94 I~ka~~a~~iGIivgTl~~q-~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~--------------------eI 152 (319)
.+..+++++|.| +|....- .-+...--|..+|++.||+++++.-++++ ..|.-++ +.
T Consensus 15 ~~~i~~~~~i~I-~~H~~pD~DaiGS~~~l~~~l~~~g~~~~~~~~~~~~-~~~~fl~~~~~i~~~~~~~~~~~~~~~~~ 92 (343)
T 3dma_A 15 TKWFERADKIVI-VSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFP-DFLKWMPGSKDILLYDRYQEFADKLIMEA 92 (343)
T ss_dssp HHHHHHCSEEEE-EECSSCCHHHHHHHHHHHHHHHHTSCEEEEEESSCCC-GGGTTSTTGGGCEETTTCHHHHHHHHHHC
T ss_pred HHHHhcCCeEEE-EecCCCChHHHHHHHHHHHHHHHcCCCEEEECCCCCc-hHhhhccCcchhcccccChHHHhhcccCC
Confidence 344456778754 4554332 23555667888999999999998888764 3343222 24
Q ss_pred CEEEEecCCCcc
Q 020984 153 DVFINVSCAQTA 164 (319)
Q Consensus 153 D~fV~iaCPr~s 164 (319)
|.+|++-|...+
T Consensus 93 ~lvi~VD~~~~~ 104 (343)
T 3dma_A 93 DVICCLDFNALK 104 (343)
T ss_dssp SEEEEESCSSGG
T ss_pred CEEEEEeCCChH
Confidence 788888888655
No 139
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=26.68 E-value=1.5e+02 Score=27.16 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhc-CCCCCCEEEEecCC
Q 020984 83 PLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLA-NFPECDVFINVSCA 161 (319)
Q Consensus 83 ~~k~l~~R~~~I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLa-Nf~eID~fV~iaCP 161 (319)
..+++.+-....+..++ ..+.|+.++.. -+...+++.+.+.+.+.|.++-++-+.+.....+. .+.+.|.+ +++||
T Consensus 235 ~~~~l~~~~~~~~~~~~-~~i~i~y~S~~-GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~i-i~g~p 311 (398)
T 1ycg_A 235 PGRIIEAYARWAEGQGK-AKAVIAYDTMW-LSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAV-LVGSP 311 (398)
T ss_dssp HHHHHHHHHHHHHTCCC-SEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEE-EEECC
T ss_pred HHHHHHHHHHHhccCCc-CeEEEEEECCc-cHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEE-EEECC
Confidence 44444433223333223 56778888863 45678999999999999988888888877766653 34466764 45566
Q ss_pred Cc
Q 020984 162 QT 163 (319)
Q Consensus 162 r~ 163 (319)
-.
T Consensus 312 ~y 313 (398)
T 1ycg_A 312 TI 313 (398)
T ss_dssp CB
T ss_pred cc
Confidence 44
No 140
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=26.55 E-value=1.3e+02 Score=23.55 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=37.6
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 162 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr 162 (319)
++.|+.+|.. -+...+++.|.+.|.+.|.++.++-+. ....+.+.|. |+++||-
T Consensus 3 ki~I~Y~S~t-GnT~~~A~~ia~~l~~~g~~v~~~~~~-----~~~~l~~~d~-vi~g~pt 56 (147)
T 2hna_A 3 DITLISGSTL-GGAEYVAEHLAEKLEEAGFTTETLHGP-----LLEDLPASGI-WLVISST 56 (147)
T ss_dssp SEEEECCTTS-CCCHHHHHHHHHHHHHTTCCEEEECCT-----TSCSSCSEEE-EEEECCT
T ss_pred eEEEEEECCc-hHHHHHHHHHHHHHHHCCCceEEecCC-----CHHHcccCCe-EEEEECc
Confidence 4678888876 567899999999999988886655332 2344555665 5556764
No 141
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=26.35 E-value=3.4e+02 Score=26.42 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=53.8
Q ss_pred CCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCCccccc----ccCCCCcc
Q 020984 100 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLD----SKEFLAPV 175 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr~sidd----~~~f~kPv 175 (319)
.+.|-||=-+..+-..+.=+..|+++|++.|.++..++-+.-+.+.|.+.++.++=|++ ||+....- .+.|..|.
T Consensus 166 ~~~VNiiG~~~~~~~~~gD~~eik~lL~~~Gi~v~~~~~gg~~~~ei~~~~~A~~niv~-~~~~~~~~A~~Le~~~GiP~ 244 (511)
T 2xdq_B 166 TPSVNIIGITTLGFHNQHDCRELKQLMADLGIQVNLVIPAAATVHDLQRLPQAWFNLVP-YREIGGLTAQYLEREFGQPS 244 (511)
T ss_dssp SCEEEEEEECTTCTTHHHHHHHHHHHHHHHTCEEEEEEETTCCTTTGGGGGGSSEEECC-CTTSSHHHHHHHHHHHCCCE
T ss_pred CCceEEEeccCCCCCCccHHHHHHHHHHHCCCeEEEEECCcCcHHHHHhhccCCEEEEE-chhhhHHHHHHHHHHhCCCe
Confidence 45666663332223445557899999999999999777788999999999888876666 99875332 24566665
Q ss_pred c
Q 020984 176 I 176 (319)
Q Consensus 176 l 176 (319)
+
T Consensus 245 i 245 (511)
T 2xdq_B 245 V 245 (511)
T ss_dssp E
T ss_pred E
Confidence 5
No 142
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=25.84 E-value=1.5e+02 Score=26.34 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhc-cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHH--hhcC-CCCCCEEEEecCCC
Q 020984 87 LKRRYYLVEKAK-DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPA--KLAN-FPECDVFINVSCAQ 162 (319)
Q Consensus 87 l~~R~~~I~ka~-~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~--KLaN-f~eID~fV~iaCPr 162 (319)
+.+...++.+.. +++++|||.++ +-.+....++.+++.+++.|.+.....+...+.- .+.. .+++|++.....+.
T Consensus 126 ~~~~l~l~~~l~P~~k~vgvi~~~-~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~ 204 (302)
T 3lkv_A 126 VEQHVELIKEILPNVKSIGVVYNP-GEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNT 204 (302)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEECT-TCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCC-CcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcc
Confidence 345566777776 89999999876 3456677888999999999999877776655421 2222 24789877654332
Q ss_pred cc-----c-ccccCCCCcccCHHHHHHhhCCCCCCCcceeeccccc
Q 020984 163 TA-----L-LDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDL 202 (319)
Q Consensus 163 ~s-----i-dd~~~f~kPvlTP~El~vAL~~~~~W~~~y~~Df~~l 202 (319)
.. + .-......||++.++..+.-|. -+.|..||+++
T Consensus 205 ~~~~~~~i~~~~~~~~iPv~~~~~~~v~~G~----l~~~~~~~~~~ 246 (302)
T 3lkv_A 205 VASAIEGMIVAANQAKTPVFGAATSYVERGA----IASLGFDYYQI 246 (302)
T ss_dssp HHHTHHHHHHHHHHTTCCEEESSHHHHHTTC----SEEEECCHHHH
T ss_pred hhhHHHHHHHHHhhcCCceeecccccccCCc----eEEEecCHHHH
Confidence 11 0 0123456677766666554332 13455555554
No 143
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=25.57 E-value=1.5e+02 Score=24.50 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=47.5
Q ss_pred HHHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCC-----CCH--Hh------------hcC-----
Q 020984 93 LVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGK-----PNP--AK------------LAN----- 148 (319)
Q Consensus 93 ~I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~-----in~--~K------------LaN----- 148 (319)
+.+..++|++--||+|.. -.+....+.+++++++.|..+++-.+|+ =.| .. -+|
T Consensus 27 aa~~L~~AkrPvil~G~g--~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~~~~ 104 (170)
T 3cf4_G 27 AAKIISKAKRPLLMVGTL--ALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDG 104 (170)
T ss_dssp HHHHHHHCSSEEEEECST--TCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCSSS
T ss_pred HHHHHHcCCCCEEEECCC--ccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhHHHH
Confidence 445556789999999984 3345678889999999999988755532 111 11 123
Q ss_pred CCCCCEEEEecCCC
Q 020984 149 FPECDVFINVSCAQ 162 (319)
Q Consensus 149 f~eID~fV~iaCPr 162 (319)
+.+.|+.+.++|.-
T Consensus 105 ~~~aDlvl~iG~~~ 118 (170)
T 3cf4_G 105 NGNYDMIITIGFKK 118 (170)
T ss_dssp SCCCSEEEEESCCH
T ss_pred hhcCCEEEEECCcc
Confidence 56899999999865
No 144
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=24.74 E-value=1.6e+02 Score=25.53 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=37.3
Q ss_pred CEEEEEEcCCCccCc--HHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEe
Q 020984 101 NIIGVLVGTLGVAGY--LHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINV 158 (319)
Q Consensus 101 ~~iGIivgTl~~q~~--~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~i 158 (319)
++++||.|..+.... +.....+.+.+++.|.+++.+...+....++... ++|+++..
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~-~~d~v~~~ 61 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM-GFQKVFIA 61 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTT-TEEEEEEC
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhcc-CCCEEEEc
Confidence 578888875432211 2244678888999999998888776555555433 68875444
No 145
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=24.08 E-value=1.1e+02 Score=28.36 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCcEEEEEcCCCC----HHhhcCCCCCCEEEEecCCCc
Q 020984 121 QMKELITKAGKKAYTLVMGKPN----PAKLANFPECDVFINVSCAQT 163 (319)
Q Consensus 121 ~l~~ll~~~Gkk~y~i~vg~in----~~KLaNf~eID~fV~iaCPr~ 163 (319)
-++++.+++|..++. ..+++ .+.|..+ +.|+.|++++.++
T Consensus 54 ~v~~~A~~~gIpv~~--~~~~~~~~~~~~l~~~-~~Dliv~~~y~~i 97 (318)
T 3q0i_A 54 PVKTLALEHNVPVYQ--PENFKSDESKQQLAAL-NADLMVVVAYGLL 97 (318)
T ss_dssp HHHHHHHHTTCCEEC--CSCSCSHHHHHHHHTT-CCSEEEESSCCSC
T ss_pred HHHHHHHHcCCCEEc--cCcCCCHHHHHHHHhc-CCCEEEEeCcccc
Confidence 356777788888653 34443 2345556 7899888888766
No 146
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=23.87 E-value=62 Score=28.69 Aligned_cols=61 Identities=15% Similarity=0.028 Sum_probs=35.4
Q ss_pred cCCEEEEEEcCCCccCcHHHHHHHHHHHHHh-CCcEEEEEcCCCCHHh----hcCC--CCCCEEEEecCC
Q 020984 99 DANIIGVLVGTLGVAGYLHMIHQMKELITKA-GKKAYTLVMGKPNPAK----LANF--PECDVFINVSCA 161 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~-Gkk~y~i~vg~in~~K----LaNf--~eID~fV~iaCP 161 (319)
...+||+|+.. .-..+..+++.+++.++++ |....++.. .-++++ +..+ ..+|.+|+.++.
T Consensus 5 ~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 72 (325)
T 2x7x_A 5 PHFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVSVEIRSA-GDDNSKQAEDVHYFMDEGVDLLIISANE 72 (325)
T ss_dssp -CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45688888876 3334456777777777777 766554432 333322 1222 368887776654
No 147
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=23.70 E-value=52 Score=29.75 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=37.6
Q ss_pred ccCCEEEEEEcCC-----CccCcHHHHHHHHHHHHHhCCcEEEEEcCCCC---HHhhc-CC--CCCCEEEEecCC
Q 020984 98 KDANIIGVLVGTL-----GVAGYLHMIHQMKELITKAGKKAYTLVMGKPN---PAKLA-NF--PECDVFINVSCA 161 (319)
Q Consensus 98 ~~a~~iGIivgTl-----~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in---~~KLa-Nf--~eID~fV~iaCP 161 (319)
+..++||+|+... .-..+..+++.+++.++ |....++..+.-. ...+. .+ ..+|.+|+++.+
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh--hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3468999999874 22334577777777776 7776666655222 22222 12 279999887653
No 148
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=23.25 E-value=1.7e+02 Score=23.31 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=34.8
Q ss_pred CCEEEEEEcCCCccCcHHH---HHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCC
Q 020984 100 ANIIGVLVGTLGVAGYLHM---IHQMKELITKAGKKAYTLVMGKPNPAKLANFP 150 (319)
Q Consensus 100 a~~iGIivgTl~~q~~~~i---~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~ 150 (319)
.+.+-||+.- |+.+... .....+.+++.|...|+|-+|..+.+.|..+.
T Consensus 106 ~~~~iillTD--G~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~L~~iA 157 (185)
T 3n2n_F 106 TASVIIALTD--GELHEDLFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIA 157 (185)
T ss_dssp EEEEEEEEEC--CCCCHHHHHHHHHHHHHHHHTTEEEEEEECSSCCHHHHTTTS
T ss_pred CCcEEEEEcC--CCCCCCcccchHHHHHHHHHCCCEEEEEEeccCCHHHHHHHh
Confidence 3456555554 3333333 25667788899999999999999999998774
No 149
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=22.88 E-value=88 Score=26.50 Aligned_cols=47 Identities=23% Similarity=0.221 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHh-CCcEEEEEcCCCC-----HHhhcCCCCCCEEEEecCCCc
Q 020984 115 YLHMIHQMKELITKA-GKKAYTLVMGKPN-----PAKLANFPECDVFINVSCAQT 163 (319)
Q Consensus 115 ~~~i~~~l~~ll~~~-Gkk~y~i~vg~in-----~~KLaNf~eID~fV~iaCPr~ 163 (319)
.+.+..+|+++|++. |.++++.=-+..+ ..+++| +.|+||-|=|--.
T Consensus 30 ~l~ia~~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an--~adlfISIH~Na~ 82 (182)
T 3czx_A 30 AQDMRNIVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIR--GSDVAIEFHTNAA 82 (182)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHH--TCSEEEEECCBCC
T ss_pred HHHHHHHHHHHHhhcCCcEEEEecCCCccCCHHHHHHHhh--CCCEEEEeccCCC
Confidence 467888889999888 8776543322222 456677 7899998876543
No 150
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=22.87 E-value=87 Score=28.67 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=35.2
Q ss_pred cCCEEEEEEcCCCccC-cHHHHHHHHHHHHHhCCcEEEEEcCCCC
Q 020984 99 DANIIGVLVGTLGVAG-YLHMIHQMKELITKAGKKAYTLVMGKPN 142 (319)
Q Consensus 99 ~a~~iGIivgTl~~q~-~~~i~~~l~~ll~~~Gkk~y~i~vg~in 142 (319)
...+|.||.|++...+ +..+++.+.+.+++.|.++-+|-+.++.
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlp 101 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLP 101 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCC
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCC
Confidence 3568999999986444 4578888999999999998888888765
No 151
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=22.41 E-value=31 Score=31.44 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=38.3
Q ss_pred EEEEcCCCccCcHHHHHHHHHHHHHhCCcE-------EEEEcCCCCHHhhcC-CCCCCEEEEecC
Q 020984 104 GVLVGTLGVAGYLHMIHQMKELITKAGKKA-------YTLVMGKPNPAKLAN-FPECDVFINVSC 160 (319)
Q Consensus 104 GIivgTl~~q~~~~i~~~l~~ll~~~Gkk~-------y~i~vg~in~~KLaN-f~eID~fV~iaC 160 (319)
-+|+|.-.......+.+.+++++++.|..- .+++.|.++.+.+.. +...|+||+.+-
T Consensus 218 l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~ 282 (413)
T 3oy2_A 218 VRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS 282 (413)
T ss_dssp EEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS
T ss_pred EEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC
Confidence 355665333333335567788888888776 477788888777775 457899998553
No 152
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=22.40 E-value=1.2e+02 Score=27.85 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=41.0
Q ss_pred EEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCC--CCCEEEEecCCC
Q 020984 103 IGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--ECDVFINVSCAQ 162 (319)
Q Consensus 103 iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~--eID~fV~iaCPr 162 (319)
=.|.+.+. .++.++.+.+.++..+.+.-+.+.|.||++.+..+. ++|++.+-+-..
T Consensus 215 D~I~LDn~----~~e~l~~av~~l~~~~~~v~ieASGGIt~eni~~~a~tGVD~IsvGslt~ 272 (285)
T 1o4u_A 215 DIVMLDNL----SPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTL 272 (285)
T ss_dssp SEEEEESC----CHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEGGGTS
T ss_pred CEEEECCC----CHHHHHHHHHHhhccCCCceEEEECCCCHHHHHHHHHcCCCEEEEeHHHc
Confidence 34666664 456666666777665667889999999999999887 589988766343
No 153
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=21.96 E-value=34 Score=35.26 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHhhc--cCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCH-----HhhcCCCCCCEEEEecCCCcc
Q 020984 93 LVEKAK--DANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNP-----AKLANFPECDVFINVSCAQTA 164 (319)
Q Consensus 93 ~I~ka~--~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~-----~KLaNf~eID~fV~iaCPr~s 164 (319)
.++.|+ ++.++|| +++. ..|...+..+.+.|+++|.. .+++.|.+-. +.+.. ++|.|+-.+|+-..
T Consensus 552 ~v~aa~e~~adiv~l--Ssl~-~~~~~~~~~v~~~Lk~aG~~-~V~vgG~P~~d~~~~~~~~~--G~D~~~~~g~~~~~ 624 (637)
T 1req_B 552 IVEAFKKSGAQVADL--CSSA-KVYAQQGLEVAKALKAAGAK-ALYLSGAFKEFGDDAAEAEK--LIDGRLFMGMDVVD 624 (637)
T ss_dssp HHHHHHHHTCSEEEE--ECCH-HHHHHHHHHHHHHHHHTTCS-EEEEESCGGGGGGGHHHHHH--HCCCEECTTCCHHH
T ss_pred HHHHHHhcCCCEEEE--eccc-HHHHHHHHHHHHHHHhCCCC-eEEEeCCCCccchhhHHHHh--ccceEecCCcCHHH
Confidence 344444 5666654 4443 67888999999999999983 3566776533 46666 89999988887543
No 154
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.52 E-value=60 Score=27.75 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCccC-cHHHHHHHHHHHHHhCCcEEEEEc
Q 020984 100 ANIIGVLVGTLGVAG-YLHMIHQMKELITKAGKKAYTLVM 138 (319)
Q Consensus 100 a~~iGIivgTl~~q~-~~~i~~~l~~ll~~~Gkk~y~i~v 138 (319)
.++|+||+|++.... +..+++.+.+++. .|.++-++-+
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl 40 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHI 40 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCG
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEec
Confidence 368999999985432 3467777766654 3444444433
No 155
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=21.32 E-value=61 Score=25.13 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCE----EEEecC
Q 020984 118 MIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDV----FINVSC 160 (319)
Q Consensus 118 i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~----fV~iaC 160 (319)
=+++|++.++++|..+++|. +.-|...|.||..-+. +++|..
T Consensus 6 Rl~~lr~~m~~~~~da~li~-~~~ni~yltGf~g~~~er~~~lli~~ 51 (138)
T 3pn9_A 6 KLQQILTYLESEKLDVAVVS-DPVTINYLTGFYSDPHERQMFLFVLA 51 (138)
T ss_dssp HHHHHHHHHHHHTCSEEEEC-CHHHHHHHHSCCCCCTTSCCEEEEES
T ss_pred HHHHHHHHHHHCCCCEEEEc-CcCceeeecCCCCCCccceEEEEEeC
Confidence 46789999999999988776 5567888889986663 555543
No 156
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=21.06 E-value=1.1e+02 Score=27.99 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=34.9
Q ss_pred HHHHHHhhccCCEEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcC
Q 020984 90 RYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMG 139 (319)
Q Consensus 90 R~~~I~ka~~a~~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg 139 (319)
+..--.++..||+|+|- | +||=|=-.+.-+|-.-|.+.|||+.+|=.+
T Consensus 38 ~~~~~~~i~~aKVIAIa-G-KGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 38 HLDEADKITGAKVFAVY-G-KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp ---------CCEEEEEE-C-STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred ccCcccCCCCceEEEEE-C-CCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 33344456678999985 6 999999999999999999999999888776
No 157
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=20.86 E-value=30 Score=20.36 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=8.7
Q ss_pred ccCCCCCCCC
Q 020984 284 HGLEMQCNSS 293 (319)
Q Consensus 284 ~GLe~~~g~~ 293 (319)
||++|++|++
T Consensus 4 qgvepdigqt 13 (26)
T 2lti_A 4 QGVEPDIGQT 13 (26)
T ss_dssp SSSSCCBBTT
T ss_pred cccCCCcchh
Confidence 7999999976
No 158
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=20.82 E-value=38 Score=28.04 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=35.2
Q ss_pred EEEEEEcCCCccCcHHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCCCCCEEEEecCCC
Q 020984 102 IIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQ 162 (319)
Q Consensus 102 ~iGIivgTl~~q~~~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~eID~fV~iaCPr 162 (319)
++.|+.+|..+ +...+++.|.+.|.. +..+-++-+.+.+++.|.+ .|+ |+++||=
T Consensus 2 kilI~Y~S~tG-nT~~iA~~ia~~l~~-~~~v~~~~~~~~~~~~l~~---~d~-iilg~pt 56 (179)
T 1yob_A 2 KIGLFFGSNTG-KTRKVAKSIKKRFDD-ETMSDALNVNRVSAEDFAQ---YQF-LILGTPT 56 (179)
T ss_dssp CEEEEECCSSS-HHHHHHHHHHTTSCT-TTBCCCEEGGGCCHHHHHT---CSE-EEEEEEC
T ss_pred eEEEEEECCCc-HHHHHHHHHHHHhCC-CCceEEEEhhhCCHHHHhc---CCE-EEEEecc
Confidence 57899999753 455777777776644 3344556677777766654 454 5566664
No 159
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=20.60 E-value=1.5e+02 Score=25.17 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCcEEEEEcCCCCH---HhhcCCCCCCEEEEecCCCcccccccCC-CCcccCHHHHHHhhCCCCCCCc
Q 020984 118 MIHQMKELITKAGKKAYTLVMGKPNP---AKLANFPECDVFINVSCAQTALLDSKEF-LAPVITPFEAMLAFGRGTQWTG 193 (319)
Q Consensus 118 i~~~l~~ll~~~Gkk~y~i~vg~in~---~KLaNf~eID~fV~iaCPr~sidd~~~f-~kPvlTP~El~vAL~~~~~W~~ 193 (319)
.+..+.+.|+++|-+...+.+.-..+ ++|.... | ||.+.+|..-.+-...| ..|-+|.-|+.-.|. +|.|
T Consensus 135 Tl~~a~~~L~~~ga~~V~v~~~v~~~~~~~~l~~~~--~-~v~~~~~~~f~~v~~~y~~~~~~~~~ev~~~l~---~~~~ 208 (208)
T 1wd5_A 135 SMEAALSVVFQEGPRRVVVAVPVASPEAVERLKARA--E-VVALSVPQDFAAVGAYYLDFGEVTDEDVEAILL---EWAG 208 (208)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEEEBCHHHHHHHHTTS--E-EEEEECCTTCCCGGGGBSCCCCCCHHHHHHHHH---TTCC
T ss_pred HHHHHHHHHHHcCCCEEEEEEEEcCHHHHHHhcccC--c-EEEEecCcchhhHHHHhcCCCCCCHHHHHHHHH---HhcC
Confidence 34556677888886644443332333 3445553 5 45556676544322222 357999999999996 6864
No 160
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=20.49 E-value=1e+02 Score=28.89 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHhCCcEEEEEcCCCC--------HHhhcCCCCCCEEEEecCCC
Q 020984 115 YLHMIHQMKELITKAGKKAYTLVMGKPN--------PAKLANFPECDVFINVSCAQ 162 (319)
Q Consensus 115 ~~~i~~~l~~ll~~~Gkk~y~i~vg~in--------~~KLaNf~eID~fV~iaCPr 162 (319)
.+.+..+|+++|++.|.++.++.+.+-+ ..+++|-...|+||-|=|--
T Consensus 39 ~L~iA~~l~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~Na 94 (326)
T 1xov_A 39 AEKVLNAASDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHLNA 94 (326)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEeccC
Confidence 3556667777777777665444333211 34566655788888776654
No 161
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=20.15 E-value=81 Score=27.56 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEcCCCCHHhhcCCC--CCCEEEEec
Q 020984 116 LHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFP--ECDVFINVS 159 (319)
Q Consensus 116 ~~i~~~l~~ll~~~Gkk~y~i~vg~in~~KLaNf~--eID~fV~ia 159 (319)
++.++++++++.++|.+.-+.+-|-||++.+..+. .+|++|+.+
T Consensus 157 ~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGS 202 (230)
T 1tqj_A 157 LPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGS 202 (230)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEECH
Confidence 56777888888888878888899999987666543 589988764
Done!