BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020985
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XIO|A Chain A, Structure Of Putative Deoxyribonuclease Tatdn1 Isoform A
Length = 301
Score = 323 bits (829), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 153/298 (51%), Positives = 216/298 (72%), Gaps = 6/298 (2%)
Query: 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAI 63
++ IDI +N TD MF+GIY G Q H D+ V+ RA GV + ++TGG+L++SK+AL +
Sbjct: 1 MKFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHL 60
Query: 64 AETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRL 123
A+T+G F TVG HPTRC EFE++ +P+ + + LL+LA+ KGKVVAIGECGLD+DRL
Sbjct: 61 AQTNGMFFSTVGCHPTRCGEFEKN-NPDLYLKELLNLAENN--KGKVVAIGECGLDFDRL 117
Query: 124 HFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSA 183
FCP + Q KYFEKQFEL+ TKLPMFLH R + A+F I +RN+DR GGV HSF G+
Sbjct: 118 QFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDRCVGGVVHSFDGTK 177
Query: 184 EDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS 243
E L+ ++YIG NGCSLKT NL+V++ IP E++MIETD+P+C +K+ HAG ++++
Sbjct: 178 EAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRT 237
Query: 244 TWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301
+P+KK K++ +K RNEPC + Q+LE+++ + D +L+ TLY+NT +VFFP
Sbjct: 238 AFPTKK--KWESGHCLKDRNEPCHIIQILEIMSAVRD-EDPLELANTLYNNTIKVFFP 292
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
pdb|3E2V|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
Length = 401
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 197/384 (51%), Gaps = 87/384 (22%)
Query: 2 ATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEAL 61
+ ++ DI +N TD MF GIY+GKQ H +D +L RA V +VTG S+ ES+ A+
Sbjct: 10 SPLKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAI 69
Query: 62 AIAET-----DGRLFCTVGVHPTRCKEFEES--GDP-----------EKHFQALLS--LA 101
+ + +L+ T+GVHP EF ++ GD E + ++L + ++
Sbjct: 70 ELVSSVKDLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVIS 129
Query: 102 KEGIEKGKVV------------------AIGECGLDYDRLHFCPSEIQRKYFEKQFELA- 142
+GK+ +IGE GLDYDR H+ E+Q+ +FE+Q +++
Sbjct: 130 NPSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKVFFEEQLKISC 189
Query: 143 ---YATKLPMFLHMREAAADFCAIVER-------NKDRF---------TGG--------- 174
+ P+FLHMR A DF I+ER KD F + G
Sbjct: 190 LNDKLSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRK 249
Query: 175 -VTHSFTGSAEDRDKLLTF--NMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEI 231
V HSFTGSA D KLL N++IG+NGCSL+T ENL VV+ IP ER+++ETD+P+CEI
Sbjct: 250 LVVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEI 309
Query: 232 KNAHAGISFV--------------KSTWPSKKKEKYDQDSL--VKGRNEPCLVRQVLEVV 275
K HA ++ KS +K +K + + L VKGRNEPC + QV VV
Sbjct: 310 KRTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNMEQVAIVV 369
Query: 276 AGCKGINDIDQLSRTLYHNTCRVF 299
+ K + D+ L T + TC++F
Sbjct: 370 SEVKDV-DLATLIDTTWKTTCKIF 392
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
Entamoeba Histolytica
Length = 325
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 168/303 (55%), Gaps = 13/303 (4%)
Query: 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIA 64
+ IDI N TD + G YHGK H DI VL RA +G+ II+T G L + K+A+ I
Sbjct: 27 QFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEII 86
Query: 65 E-----TDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLD 119
T+ +L T+GVHPTR E ++ G + LL L ++ I+K VVAIGE GLD
Sbjct: 87 NKYQNLTNIKLVTTIGVHPTRTNELKQEG----YLDELLLLCEKNIDK--VVAIGEIGLD 140
Query: 120 YDRLHFCPSEIQRKYFEKQFELAYATK-LPMFLHMREAAADFCAIVERNKDRFTGGVTHS 178
Y+RL F E Q + L LP F H R++ +D C + + GV H
Sbjct: 141 YERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGCKGVVHC 200
Query: 179 FTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGI 238
F G+ E+ +++L IG+ G SL++ E L+V++ IPIER+ IETD PYC IK AG
Sbjct: 201 FDGTEEEMNQILNEGWDIGVTGNSLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAGF 260
Query: 239 SFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRV 298
++K K EKY ++ V+ RNEP + + +++ K I+ + +++ +Y N+ +
Sbjct: 261 KYLKEKDFGVKVEKYQRNKYVQRRNEPSNIIDIAIIMSSIKHISLFEFVNK-VYSNSMNM 319
Query: 299 FFP 301
+FP
Sbjct: 320 YFP 322
>pdb|3RCM|A Chain A, Crystal Structure Of Efi Target 500140:tatd Family
Hydrolase From Pseudomonas Putida
Length = 287
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 143/283 (50%), Gaps = 47/283 (16%)
Query: 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIA 64
+LIDI VN T+ F H +Q A ++ RA +GV + ++TG SL S++AL +
Sbjct: 2 QLIDIGVNLTNSSF----HDQQ------AAIVERALEAGVTQXLLTGTSLAVSEQALELC 51
Query: 65 E----TDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDY 120
+ + LF T GVHP K ++ D E+ + LLS + +V A+GECGLD+
Sbjct: 52 QQLDASGAHLFATAGVHPHDAKAWDT--DSERQLRLLLS-------EPRVRAVGECGLDF 102
Query: 121 DRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFT 180
+R F P +Q K E Q LA +LP+FLH R+A+ AI++ +D TG V H FT
Sbjct: 103 NR-DFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTGAVVHCFT 161
Query: 181 GSAEDRDKLLTFNMYIGING--CSLKTAENLDVVRG-IPIERMMIETDSPYCEIKNAHAG 237
G E L +++IGI G C + +L + G IP R+ +E+D+PY
Sbjct: 162 GEREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLXLESDAPYL-------- 213
Query: 238 ISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKG 280
+S P K GRNEP + +VL VA +G
Sbjct: 214 --LPRSLRPKPK----------SGRNEPAFLPEVLREVALHRG 244
>pdb|1XWY|A Chain A, Crystal Structure Of Tatd Deoxyribonuclease From
Escherichia Coli K12 At 2.0 A Resolution
Length = 264
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 149/298 (50%), Gaps = 44/298 (14%)
Query: 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIA 64
R+ DI VN T F A D V++ A+ +GV+ +++TG +L ES++A +A
Sbjct: 4 RMFDIGVNLTSSQF----------AKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLA 53
Query: 65 ETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLH 124
+ T GVHP +++ + + +A++ LA + +VVAIGECGLD++R +
Sbjct: 54 RQYSSCWSTAGVHPHDSSQWQAATE-----EAIIELAAQP----EVVAIGECGLDFNR-N 103
Query: 125 FCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAE 184
F E Q + F Q +A +P+F+H R+A F ++E D+ G V H FTG+ E
Sbjct: 104 FSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTRE 163
Query: 185 DRDKLLTFNMYIGING--CSLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISFV 241
+ + +YIGI G C + L +++ IP E+++IETD+PY ++
Sbjct: 164 EMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDL------- 216
Query: 242 KSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
+ PS + RNEP + +L+ +A +G D L+ T N +F
Sbjct: 217 -TPKPSSR------------RNEPAHLPHILQRIAHWRG-EDAAWLAATTDANVKTLF 260
>pdb|2GZX|A Chain A, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237.
pdb|2GZX|B Chain B, Crystal Structure Of The Tatd Deoxyribonuclease Mw0446
From Staphylococcus Aureus. Northeast Structural
Genomics Consortium Target Zr237
Length = 265
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 133/282 (47%), Gaps = 51/282 (18%)
Query: 6 LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAE 65
LID V+ D + D++ V++RA +GVDR V G + + A + +
Sbjct: 2 LIDTHVHLNDEQYD----------DDLSEVITRAREAGVDRXFVVGFNKSTIERAXKLID 51
Query: 66 TDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHF 125
L+ +G HP +F E+H + + SLA+ KV+ IGE GLDY H+
Sbjct: 52 EYDFLYGIIGWHPVDAIDF-----TEEHLEWIESLAQHP----KVIGIGEXGLDY---HW 99
Query: 126 --CPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSA 183
P+++Q++ F KQ LA KLP+ +H REA D I+ GG+ HSF+GS
Sbjct: 100 DKSPADVQKEVFRKQIALAKRLKLPIIIHNREATQDCIDILLEEHAEEVGGIXHSFSGSP 159
Query: 184 EDRDKLLT-FNMYIGING-CSLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISF 240
E D + N YI + G + K A+ +V + + ER+++ETD+PY
Sbjct: 160 EIADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSXERLLVETDAPYL----------- 208
Query: 241 VKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGIN 282
S P + K RNEP V V E +A KG++
Sbjct: 209 --SPHPYRGK-----------RNEPARVTLVAEQIAELKGLS 237
>pdb|1J6O|A Chain A, Crystal Structure Of Tatd-related Deoxyribonuclease
(tm0667) From Thermotoga Maritima At 1.8 A Resolution
Length = 268
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 135/272 (49%), Gaps = 37/272 (13%)
Query: 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDP 90
D V+S + ++ ++ G +LE+SK++L +++T R+FC+VGVHP KE P
Sbjct: 28 DRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGVHPHDAKEV-----P 82
Query: 91 EKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMF 150
E + L AK+ KVVAIGE GLD+ R + P+E+Q++ F +Q ELA LP+
Sbjct: 83 EDFIEHLEKFAKD----EKVVAIGETGLDFFR-NISPAEVQKRVFVEQIELAGKLNLPLV 137
Query: 151 LHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGING-CSLKTAENL 209
+H+R+A ++ I+ GV H+F+ E K + +GI G + E L
Sbjct: 138 VHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVTYPKNEAL 197
Query: 210 -DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLV 268
+VV+ + +E +++ETD P+ P + K RNEP +
Sbjct: 198 REVVKRVGLEYIVLETDCPFL-------------PPQPFRGK-----------RNEPKYL 233
Query: 269 RQVLEVVAGCKGINDIDQLSRTLYHNTCRVFF 300
+ V+E ++ G+ + ++ N R+F
Sbjct: 234 KYVVETISQVLGVPEA-KVDEATTENARRIFL 264
>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
pdb|1YIX|B Chain B, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
Length = 265
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 45/274 (16%)
Query: 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEAL-AIAETDGRLFCTVGVHPTRCKEFEESGD 89
D+ VL++A + V + +L + E D +F + GVHP D
Sbjct: 21 DVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVF-SCGVHPL------NQND 73
Query: 90 PEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEI--QRKYFEKQFELAYATKL 147
P + L + E+G VVA+GE GLDY ++ P Q++ F ++
Sbjct: 74 PYD----VEDLRRLAAEEG-VVALGETGLDY---YYTPETKVRQQESFIHHIQIGRELNK 125
Query: 148 PMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGING-CSLKTA 206
P+ +H R+A AD AI+ K GGV H FT E KLL YI +G + + A
Sbjct: 126 PVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNA 185
Query: 207 ENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEP 265
E L D R +P++R+++ETDSPY + P + KE N+P
Sbjct: 186 EQLRDAARYVPLDRLLVETDSPYL-------------APVPHRGKE-----------NQP 221
Query: 266 CLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
+VR V E +A KG+ +++L++ N R+F
Sbjct: 222 AMVRDVAEYMAVLKGVA-VEELAQVTTDNFARLF 254
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 117 GLDYDRLHFCPSEIQRKYFEK--QFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGG 174
GLDY+ LH ++ K + +F LA AT LP +LHMR+ ER+ F+ G
Sbjct: 12 GLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVG------ERDNVVFSCG 65
Query: 175 V 175
V
Sbjct: 66 V 66
>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia
Coli K12, At 1.8 A Resolution
Length = 259
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 29/229 (12%)
Query: 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIA 64
R ID +F F G D L RA +GV +IIV E LA+A
Sbjct: 4 RFIDTHCHFDFPPFSG----------DEEASLQRAAQAGVGKIIVPATEAENFARVLALA 53
Query: 65 ETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEK--GKVVAIGECGLDY-- 120
E L+ +G+HP G EKH L ++ +E+ KVVA+GE GLD
Sbjct: 54 ENYQPLYAALGLHP---------GMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFG 104
Query: 121 DRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFT 180
D F E Q+ ++Q +LA LP+ LH R D A+ + D GV H F+
Sbjct: 105 DDPQF---ERQQWLLDEQLKLAKRYDLPVILHSRR-THDKLAMHLKRHDLPRTGVVHGFS 160
Query: 181 GSAEDRDKLLTFNMYIGINGCSL--KTAENLDVVRGIPIERMMIETDSP 227
GS + ++ + IG+ G + ++ DV+ +P+ +++ETD+P
Sbjct: 161 GSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAP 209
>pdb|2Y1H|A Chain A, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
pdb|2Y1H|B Chain B, Crystal Structure Of The Human Tatd-Domain Protein 3
(Tatdn3)
Length = 272
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 47/243 (19%)
Query: 67 DGRLFCTVGVHPTRCKEFEESGDPEKHFQAL----LSLAKEGIE--KGKVVAIGECGLDY 120
+G + +GVHP + G P + +++ L +A IE K +++AIGE GLD+
Sbjct: 58 NGFVLPCLGVHPVQ-------GLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDF 110
Query: 121 DRLHFCPS----EIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVT 176
F + E QR+ +Q +LA LP+ +H R A +++ +
Sbjct: 111 SP-RFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKV--LL 167
Query: 177 HSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHA 236
H+F G + + + I +++ + +V+ +P+ + +ETDSP
Sbjct: 168 HAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSP--------- 218
Query: 237 GISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC 296
+ P K+ RNEP + E +A KGI+ ++++ N
Sbjct: 219 ------ALGPEKQV-----------RNEPWNISISAEYIAQVKGIS-VEEVIEVTTQNAL 260
Query: 297 RVF 299
++F
Sbjct: 261 KLF 263
>pdb|3GG7|A Chain A, Crystal Structure Of An Uncharacterized Metalloprotein
From Deinococcus Radiodurans
Length = 254
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 149 MFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAEN 208
+ +H R A ++ +E N R + H ++GS + + ++ + + ++T +
Sbjct: 121 LSIHSRRAESEVLNCLEANP-RSGTPILHWYSGSVTELRRAISLGCWFSVGPTMVRTQKG 179
Query: 209 LDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS 243
++R +P +R++ ETD P+ E+ A VKS
Sbjct: 180 AALIRSMPRDRVLTETDGPFLELDGQAALPWDVKS 214
>pdb|1MFI|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate
pdb|1MFI|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate
pdb|1MFI|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate
pdb|2GDG|A Chain A, Crystal Structure Of Covalently Modified Macrophage
Inhibitory Factor
pdb|2GDG|B Chain B, Crystal Structure Of Covalently Modified Macrophage
Inhibitory Factor
pdb|2GDG|C Chain C, Crystal Structure Of Covalently Modified Macrophage
Inhibitory Factor
Length = 114
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F + DP +L S+
Sbjct: 6 NTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCA-LCSLHSI 64
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL DRLH P + Y++
Sbjct: 65 GKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYD 100
>pdb|1FIM|A Chain A, Macrophage Migration Inhibitory Factor
Length = 114
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F + DP +L S+
Sbjct: 6 NTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLXTFSGTSDPCA-LCSLHSI 64
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL DRLH P + Y++
Sbjct: 65 GKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYD 100
>pdb|1MFF|A Chain A, Macrophage Migration Inhibitory Factor Y95f Mutant
pdb|1MFF|B Chain B, Macrophage Migration Inhibitory Factor Y95f Mutant
pdb|1MFF|C Chain C, Macrophage Migration Inhibitory Factor Y95f Mutant
Length = 114
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F + DP +L S+
Sbjct: 6 NTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCA-LCSLHSI 64
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL DRLH P + Y++
Sbjct: 65 GKIGGAQNRNYSKLLCGLLSDRLHISPDRVFINYYD 100
>pdb|4EVG|A Chain A, Crystal Structure Of Mif L46a Mutant
pdb|4EVG|B Chain B, Crystal Structure Of Mif L46a Mutant
pdb|4EVG|C Chain C, Crystal Structure Of Mif L46a Mutant
Length = 114
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 6 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQAMAFGGSSEPCA-LCSLHSI 64
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 65 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 100
>pdb|1GIF|A Chain A, Human Glycosylation-Inhibiting Factor
pdb|1GIF|B Chain B, Human Glycosylation-Inhibiting Factor
pdb|1GIF|C Chain C, Human Glycosylation-Inhibiting Factor
Length = 115
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 7 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCA-LCSLHSI 65
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 66 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 101
>pdb|1CA7|A Chain A, Macrophage Migration Inhibitory Factor (Mif) With
Hydroxphenylpyruvate
pdb|1CA7|B Chain B, Macrophage Migration Inhibitory Factor (Mif) With
Hydroxphenylpyruvate
pdb|1CA7|C Chain C, Macrophage Migration Inhibitory Factor (Mif) With
Hydroxphenylpyruvate
pdb|1LJT|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With
(S,R)-3-(4-Hydroxyphenyl)-4,5-Dihydro-5-
Isoxazole-Acetic Acid Methyl Ester (Iso-1)
pdb|1LJT|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With
(S,R)-3-(4-Hydroxyphenyl)-4,5-Dihydro-5-
Isoxazole-Acetic Acid Methyl Ester (Iso-1)
pdb|1LJT|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor Complexed With
(S,R)-3-(4-Hydroxyphenyl)-4,5-Dihydro-5-
Isoxazole-Acetic Acid Methyl Ester (Iso-1)
pdb|2OOH|A Chain A, Crystal Structure Of Mif Bound To A Novel Inhibitor,
Oxim-11
pdb|2OOH|B Chain B, Crystal Structure Of Mif Bound To A Novel Inhibitor,
Oxim-11
pdb|2OOH|C Chain C, Crystal Structure Of Mif Bound To A Novel Inhibitor,
Oxim-11
pdb|2OOW|A Chain A, Mif Bound To A Fluorinated Oxim Derivative
pdb|2OOW|B Chain B, Mif Bound To A Fluorinated Oxim Derivative
pdb|2OOW|C Chain C, Mif Bound To A Fluorinated Oxim Derivative
pdb|2OOZ|A Chain A, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Oxim6 (An Oxim Derivative Not Containing A Ring In
Its R-Group)
pdb|2OOZ|B Chain B, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Oxim6 (An Oxim Derivative Not Containing A Ring In
Its R-Group)
pdb|2OOZ|C Chain C, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Oxim6 (An Oxim Derivative Not Containing A Ring In
Its R-Group)
pdb|3B9S|A Chain A, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor, 4-Ipp.
pdb|3B9S|B Chain B, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor, 4-Ipp.
pdb|3B9S|C Chain C, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor, 4-Ipp.
pdb|3DJH|A Chain A, Macrophage Migration Inhibitory Factor (Mif) At 1.25 A
Resolution
pdb|3DJH|B Chain B, Macrophage Migration Inhibitory Factor (Mif) At 1.25 A
Resolution
pdb|3DJH|C Chain C, Macrophage Migration Inhibitory Factor (Mif) At 1.25 A
Resolution
pdb|3DJI|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor Bound To An Acetaminophen Dimer Derived From
Napqi
pdb|3DJI|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor Bound To An Acetaminophen Dimer Derived From
Napqi
pdb|3DJI|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor Bound To An Acetaminophen Dimer Derived From
Napqi
pdb|3DJI|D Chain D, Crystal Structure Of Macrophage Migration Inhibitory
Factor Bound To An Acetaminophen Dimer Derived From
Napqi
pdb|3DJI|E Chain E, Crystal Structure Of Macrophage Migration Inhibitory
Factor Bound To An Acetaminophen Dimer Derived From
Napqi
pdb|3DJI|F Chain F, Crystal Structure Of Macrophage Migration Inhibitory
Factor Bound To An Acetaminophen Dimer Derived From
Napqi
pdb|3CE4|A Chain A, Structure Of Macrophage Migration Inhibitory Factor
Covalently Inhibited By Pmsf Treatment
pdb|3CE4|B Chain B, Structure Of Macrophage Migration Inhibitory Factor
Covalently Inhibited By Pmsf Treatment
pdb|3CE4|C Chain C, Structure Of Macrophage Migration Inhibitory Factor
Covalently Inhibited By Pmsf Treatment
pdb|3IJG|A Chain A, Macrophage Migration Inhibitory Factor (Mif) Bound To The
(R)- Stereoisomer Of Av1013
pdb|3IJG|B Chain B, Macrophage Migration Inhibitory Factor (Mif) Bound To The
(R)- Stereoisomer Of Av1013
pdb|3IJG|C Chain C, Macrophage Migration Inhibitory Factor (Mif) Bound To The
(R)- Stereoisomer Of Av1013
pdb|3IJJ|A Chain A, Ternary Complex Of Macrophage Migration Inhibitory Factor
(Mif) Bound Both To 4-Hydroxyphenylpyruvate And To The
Allosteric Inhibitor Av1013 (R-Stereoisomer)
pdb|3IJJ|B Chain B, Ternary Complex Of Macrophage Migration Inhibitory Factor
(Mif) Bound Both To 4-Hydroxyphenylpyruvate And To The
Allosteric Inhibitor Av1013 (R-Stereoisomer)
pdb|3IJJ|C Chain C, Ternary Complex Of Macrophage Migration Inhibitory Factor
(Mif) Bound Both To 4-Hydroxyphenylpyruvate And To The
Allosteric Inhibitor Av1013 (R-Stereoisomer)
pdb|4F2K|A Chain A, Macrophage Migration Inhibitory Factor Covalently
Complexed With Phenethylisothiocyanate
pdb|4F2K|B Chain B, Macrophage Migration Inhibitory Factor Covalently
Complexed With Phenethylisothiocyanate
pdb|4F2K|C Chain C, Macrophage Migration Inhibitory Factor Covalently
Complexed With Phenethylisothiocyanate
pdb|3U18|A Chain A, Chicago Sky Blue 6b, A Novel Inhibitor For Macrophage
Migration Inhibitory Factor
pdb|3U18|B Chain B, Chicago Sky Blue 6b, A Novel Inhibitor For Macrophage
Migration Inhibitory Factor
pdb|3U18|C Chain C, Chicago Sky Blue 6b, A Novel Inhibitor For Macrophage
Migration Inhibitory Factor
pdb|3SMB|A Chain A, Phenethylisothiocyanate Covalently Bound To Macrophage
Migration Inhibitory Factor (mif)
pdb|3SMB|B Chain B, Phenethylisothiocyanate Covalently Bound To Macrophage
Migration Inhibitory Factor (mif)
pdb|3SMB|C Chain C, Phenethylisothiocyanate Covalently Bound To Macrophage
Migration Inhibitory Factor (mif)
pdb|3SMC|A Chain A, Macrophage Migration Inhibitory Factor (mif) With
Covalently Bound L- Sulforaphane
pdb|3SMC|B Chain B, Macrophage Migration Inhibitory Factor (mif) With
Covalently Bound L- Sulforaphane
pdb|3SMC|C Chain C, Macrophage Migration Inhibitory Factor (mif) With
Covalently Bound L- Sulforaphane
Length = 114
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 6 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCA-LCSLHSI 64
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 65 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 100
>pdb|1CGQ|A Chain A, Macrophage Migration Inhibitory Factor (Mif) With Alanine
Inserted Between Pro-1 And Met-2
pdb|1CGQ|B Chain B, Macrophage Migration Inhibitory Factor (Mif) With Alanine
Inserted Between Pro-1 And Met-2
pdb|1CGQ|C Chain C, Macrophage Migration Inhibitory Factor (Mif) With Alanine
Inserted Between Pro-1 And Met-2
Length = 115
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 7 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCA-LCSLHSI 65
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 66 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 101
>pdb|3HOF|A Chain A, Structure Of Macrophage Migration Inhibitory Factor (Mif)
With Caffeic Acid At 1.9a Resolution
pdb|3HOF|B Chain B, Structure Of Macrophage Migration Inhibitory Factor (Mif)
With Caffeic Acid At 1.9a Resolution
pdb|3HOF|C Chain C, Structure Of Macrophage Migration Inhibitory Factor (Mif)
With Caffeic Acid At 1.9a Resolution
Length = 123
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 7 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCA-LCSLHSI 65
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 66 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 101
>pdb|1GCZ|A Chain A, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor.
pdb|1GCZ|B Chain B, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor.
pdb|1GCZ|C Chain C, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor.
pdb|1GD0|A Chain A, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GD0|B Chain B, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GD0|C Chain C, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|3JSF|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Hydroxyquinoline Inhibitor 638 At
1.93a Resolution
pdb|3JSF|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Hydroxyquinoline Inhibitor 638 At
1.93a Resolution
pdb|3JSF|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Hydroxyquinoline Inhibitor 638 At
1.93a Resolution
pdb|3JSG|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor Hydroxyquinoline Inhibitor 707 At 1.58a
Resolution
pdb|3JSG|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor Hydroxyquinoline Inhibitor 707 At 1.58a
Resolution
pdb|3JSG|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor Hydroxyquinoline Inhibitor 707 At 1.58a
Resolution
pdb|3JTU|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor Hydroxyquinoline Inhibitor 708 At 1.86a
Resolution
pdb|3JTU|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor Hydroxyquinoline Inhibitor 708 At 1.86a
Resolution
pdb|3JTU|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor Hydroxyquinoline Inhibitor 708 At 1.86a
Resolution
pdb|3L5P|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Imidazopyridazinol Inhibitor At 1.80a
Resolution
pdb|3L5P|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Imidazopyridazinol Inhibitor At 1.80a
Resolution
pdb|3L5P|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Imidazopyridazinol Inhibitor At 1.80a
Resolution
pdb|3L5R|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Phenylchromenone Inhibitor At 1.94a
Resolution
pdb|3L5R|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Phenylchromenone Inhibitor At 1.94a
Resolution
pdb|3L5R|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Phenylchromenone Inhibitor At 1.94a
Resolution
pdb|3L5S|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Imidazopyrimidinylphenyl Inhibitor At
1.86a Resolution
pdb|3L5S|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Imidazopyrimidinylphenyl Inhibitor At
1.86a Resolution
pdb|3L5S|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Imidazopyrimidinylphenyl Inhibitor At
1.86a Resolution
pdb|3L5T|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Thiophenepiperazinylquinolinone
Inhibitor At 1.86a Resolution
pdb|3L5T|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Thiophenepiperazinylquinolinone
Inhibitor At 1.86a Resolution
pdb|3L5T|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Thiophenepiperazinylquinolinone
Inhibitor At 1.86a Resolution
pdb|3L5U|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Benzothiazole Inhibitor At 1.90a
Resolution
pdb|3L5U|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Benzothiazole Inhibitor At 1.90a
Resolution
pdb|3L5U|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Benzothiazole Inhibitor At 1.90a
Resolution
pdb|3L5V|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Glycerol At 1.70a Resolution
pdb|3L5V|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Glycerol At 1.70a Resolution
pdb|3L5V|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor (Mif) With Glycerol At 1.70a Resolution
Length = 122
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 6 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCA-LCSLHSI 64
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 65 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 100
>pdb|1MIF|A Chain A, Macrophage Migration Inhibitory Factor (Mif)
pdb|1MIF|B Chain B, Macrophage Migration Inhibitory Factor (Mif)
pdb|1MIF|C Chain C, Macrophage Migration Inhibitory Factor (Mif)
Length = 115
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 7 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCA-LCSLHSI 65
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 66 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 101
>pdb|1P1G|A Chain A, Macrophage Migration Inhibitory Factor (Mif) With Pro-1
Mutated To Gly-1
pdb|1P1G|B Chain B, Macrophage Migration Inhibitory Factor (Mif) With Pro-1
Mutated To Gly-1
pdb|1P1G|C Chain C, Macrophage Migration Inhibitory Factor (Mif) With Pro-1
Mutated To Gly-1
Length = 114
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 6 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCA-LCSLHSI 64
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 65 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 100
>pdb|4EUI|A Chain A, Crystal Structure Of Mif L46f Mutant
pdb|4EUI|B Chain B, Crystal Structure Of Mif L46f Mutant
pdb|4EUI|C Chain C, Crystal Structure Of Mif L46f Mutant
Length = 114
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 6 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQFMAFGGSSEPCA-LCSLHSI 64
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 65 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 100
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 33 ATVLSRAWS-------SGVDRIIVTGG-SLEESKEALAIAETDGRLFCTVGVHPTRCKEF 84
A L++AW +G R+IV G + L ++ DG FC H ++
Sbjct: 171 AEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDY 230
Query: 85 EESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEI 130
ES P++ L A+E I + V+A+G GL L C E+
Sbjct: 231 RESWQPQQMSPLALERAQE-IARKVVLALGGYGLFGVELFVCGDEV 275
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 33 ATVLSRAWS-------SGVDRIIVTGG-SLEESKEALAIAETDGRLFCTVGVHPTRCKEF 84
A L++AW +G R+IV G + L ++ DG FC H ++
Sbjct: 170 AEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDY 229
Query: 85 EESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEI 130
ES P++ L A+E I + V+A+G GL L C E+
Sbjct: 230 RESWQPQQMSPLALERAQE-IARKVVLALGGYGLFGVELFVCGDEV 274
>pdb|4ETG|A Chain A, Crystal Structure Of Mif L46g Mutant
pdb|4ETG|B Chain B, Crystal Structure Of Mif L46g Mutant
pdb|4ETG|C Chain C, Crystal Structure Of Mif L46g Mutant
Length = 114
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 41 SSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100
++ V R V G L E + LA A + V V P + F S +P +L S+
Sbjct: 6 NTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQGMAFGGSSEPCA-LCSLHSI 64
Query: 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFE 136
K G + + + CGL +RL P + Y++
Sbjct: 65 GKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYD 100
>pdb|3OHP|A Chain A, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|B Chain B, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|C Chain C, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|D Chain D, Crystal Structure Of Hgprt From Vibrio Cholerae
Length = 177
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 44 VDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTR 80
V+ II TG +L + KE LA+ E CT+ PTR
Sbjct: 97 VEDIIDTGNTLNKVKEILALREPKSIRICTLLDKPTR 133
>pdb|3O6V|A Chain A, Crystal Structure Of Uridine Phosphorylase From Vibrio
Cholerae O1 Biovar El Tor
pdb|3O6V|B Chain B, Crystal Structure Of Uridine Phosphorylase From Vibrio
Cholerae O1 Biovar El Tor
Length = 261
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLP-----MFLHMR-EAAADFCAI 163
+V G LD LHF P E F++A A K +HM A++D
Sbjct: 115 IVTTGSVRLDGASLHFAPMEFPAV---PDFDVATAMKAAAQESGATVHMGVTASSDTFYP 171
Query: 164 VERNKDRFTGGVTHSFTGSAEDRDKLLTFN 193
+ D FTG V F GS ++ + N
Sbjct: 172 GQERYDTFTGRVVRRFQGSMKEWQDMGVLN 201
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1YNJ|D Chain D, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNJ|J Chain J, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNN|D Chain D, Taq Rna Polymerase-rifampicin Complex
pdb|1YNN|J Chain J, Taq Rna Polymerase-rifampicin Complex
Length = 1524
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 182 SAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIK 232
SA + +++L FN YI ++ V+ G+P+E+ + TD Y E++
Sbjct: 119 SATELEQVLYFNKYIVLDPKGA-------VLDGVPVEKRQLLTDEEYRELR 162
>pdb|3M2T|A Chain A, The Crystal Structure Of Dehydrogenase From
Chromobacterium Violaceum
pdb|3M2T|B Chain B, The Crystal Structure Of Dehydrogenase From
Chromobacterium Violaceum
Length = 359
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSL 54
I ID+A+ F DG + + Q H + A+SSG ++ G S
Sbjct: 181 IHTIDLAITFGDGELRRVQSSVQRHDDALIVRADXAFSSGATASLLAGTSF 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,475,531
Number of Sequences: 62578
Number of extensions: 386191
Number of successful extensions: 847
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 35
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)