Query 020985
Match_columns 319
No_of_seqs 178 out of 1281
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0084 TatD Mg-dependent DNas 100.0 2.5E-67 5.4E-72 475.6 29.5 254 4-301 1-256 (256)
2 PRK10425 DNase TatD; Provision 100.0 1.1E-62 2.4E-67 449.2 29.2 255 6-301 1-258 (258)
3 PRK11449 putative deoxyribonuc 100.0 2.3E-61 5E-66 441.0 31.1 255 3-301 2-258 (258)
4 PRK10812 putative DNAse; Provi 100.0 3E-61 6.5E-66 441.6 30.7 251 4-301 1-256 (265)
5 PF01026 TatD_DNase: TatD rela 100.0 1.6E-59 3.5E-64 428.9 24.5 252 7-300 1-255 (255)
6 KOG3020 TatD-related DNase [Re 100.0 1.7E-55 3.6E-60 401.0 25.0 277 5-301 17-296 (296)
7 TIGR00010 hydrolase, TatD fami 100.0 1.1E-44 2.4E-49 328.5 29.0 250 6-301 1-252 (252)
8 cd01310 TatD_DNAse TatD like p 100.0 1.1E-43 2.4E-48 321.5 29.1 249 6-300 1-251 (251)
9 cd00530 PTE Phosphotriesterase 100.0 1.5E-34 3.2E-39 268.8 22.9 237 33-299 35-293 (293)
10 COG1099 Predicted metal-depend 100.0 2.4E-34 5.1E-39 248.5 19.6 231 5-302 1-254 (254)
11 COG1831 Predicted metal-depend 99.9 4.5E-25 9.7E-30 195.9 21.2 256 1-303 2-284 (285)
12 TIGR03583 EF_0837 probable ami 99.9 3.6E-22 7.8E-27 191.3 20.7 233 5-303 51-314 (365)
13 cd01295 AdeC Adenine deaminase 99.8 6.3E-17 1.4E-21 158.1 24.0 235 5-303 10-256 (422)
14 PRK09875 putative hydrolase; P 99.7 9.3E-16 2E-20 142.2 24.2 262 4-300 6-292 (292)
15 cd01307 Met_dep_hydrolase_B Me 99.6 4.6E-14 1E-18 134.0 21.8 133 135-302 151-297 (338)
16 PF04909 Amidohydro_2: Amidohy 99.6 2.8E-14 6E-19 129.9 14.9 227 7-301 1-273 (273)
17 cd01292 metallo-dependent_hydr 99.6 8.2E-14 1.8E-18 125.6 16.8 243 6-297 1-274 (275)
18 cd01311 PDC_hydrolase 2-pyrone 99.5 1.3E-12 2.9E-17 119.8 20.8 197 6-229 2-224 (263)
19 PRK09237 dihydroorotase; Provi 99.4 2.7E-11 5.9E-16 116.8 21.3 242 5-302 54-316 (380)
20 PF02126 PTE: Phosphotriestera 99.3 5.5E-11 1.2E-15 111.3 15.7 266 3-299 5-307 (308)
21 COG2159 Predicted metal-depend 99.3 8E-10 1.7E-14 103.0 20.7 208 36-303 55-292 (293)
22 COG1735 Php Predicted metal-de 99.1 8.9E-09 1.9E-13 94.3 19.0 271 3-302 15-315 (316)
23 COG3618 Predicted metal-depend 99.1 2.6E-08 5.6E-13 90.7 20.8 244 2-301 5-278 (279)
24 TIGR01975 isoAsp_dipep isoaspa 99.0 3.3E-08 7.2E-13 95.7 20.9 253 5-302 57-344 (389)
25 PRK10657 isoaspartyl dipeptida 98.9 2E-07 4.2E-12 90.1 20.9 262 5-303 57-344 (388)
26 PRK12394 putative metallo-depe 98.8 4E-06 8.7E-11 81.0 25.1 246 5-302 57-321 (379)
27 cd01294 DHOase Dihydroorotase 98.8 6.4E-07 1.4E-11 85.0 19.0 242 5-303 5-299 (335)
28 cd01299 Met_dep_hydrolase_A Me 98.7 5.7E-06 1.2E-10 78.3 21.9 253 5-302 14-314 (342)
29 TIGR02967 guan_deamin guanine 98.7 2.8E-05 6E-10 75.5 27.1 217 36-302 96-343 (401)
30 COG3964 Predicted amidohydrola 98.6 5.5E-06 1.2E-10 75.9 18.3 234 5-304 58-322 (386)
31 PRK09228 guanine deaminase; Pr 98.6 4.8E-05 1E-09 74.9 26.3 217 36-302 121-368 (433)
32 TIGR01178 ade adenine deaminas 98.6 8.1E-06 1.8E-10 82.5 21.2 235 5-303 51-297 (552)
33 cd01308 Isoaspartyl-dipeptidas 98.6 4.8E-05 1E-09 73.5 25.5 253 5-303 55-343 (387)
34 cd01312 Met_dep_hydrolase_D Me 98.6 2.4E-05 5.3E-10 75.6 23.2 138 129-302 159-336 (381)
35 PRK07213 chlorohydrolase; Prov 98.5 0.00011 2.5E-09 70.8 25.6 133 133-303 179-327 (375)
36 cd01297 D-aminoacylase D-amino 98.5 2.3E-05 5E-10 76.6 20.9 171 92-302 164-355 (415)
37 PRK07583 cytosine deaminase-li 98.5 5.7E-05 1.2E-09 74.4 23.4 217 34-303 126-381 (438)
38 cd01298 ATZ_TRZ_like TRZ/ATZ f 98.4 0.00011 2.4E-09 71.0 24.1 138 132-302 193-352 (411)
39 cd01293 Bact_CD Bacterial cyto 98.4 5.5E-05 1.2E-09 72.7 21.7 174 35-227 101-309 (398)
40 cd01303 GDEase Guanine deamina 98.4 0.00031 6.6E-09 69.1 26.3 179 36-228 117-321 (429)
41 PRK06380 metal-dependent hydro 98.4 0.00041 9E-09 67.7 26.9 94 133-228 186-297 (418)
42 PRK08203 hydroxydechloroatrazi 98.4 0.00038 8.2E-09 68.7 26.8 138 132-302 213-371 (451)
43 PRK09045 N-ethylammeline chlor 98.4 0.00028 6.1E-09 69.5 25.5 135 132-302 201-360 (443)
44 PRK08204 hypothetical protein; 98.4 0.00014 3E-09 71.7 23.3 94 133-228 201-304 (449)
45 PRK06687 chlorohydrolase; Vali 98.3 0.00022 4.8E-09 69.7 23.9 134 133-302 196-354 (419)
46 PLN02942 dihydropyrimidinase 98.3 0.0003 6.6E-09 70.2 23.0 257 5-302 58-382 (486)
47 cd01305 archeal_chlorohydrolas 98.3 0.00011 2.4E-09 67.2 18.5 89 135-228 127-224 (263)
48 PRK06038 N-ethylammeline chlor 98.2 0.00052 1.1E-08 67.4 24.1 137 133-302 190-348 (430)
49 PRK08393 N-ethylammeline chlor 98.2 0.00025 5.4E-09 69.5 21.0 94 133-228 189-299 (424)
50 PRK07228 N-ethylammeline chlor 98.2 0.00035 7.6E-09 68.8 22.0 137 133-302 199-357 (445)
51 PRK15493 5-methylthioadenosine 98.2 0.0011 2.5E-08 65.2 25.3 134 133-302 197-355 (435)
52 cd01317 DHOase_IIa Dihydroorot 98.1 0.0009 1.9E-08 64.5 23.0 120 5-155 15-142 (374)
53 PRK07369 dihydroorotase; Provi 98.1 0.0012 2.6E-08 64.7 24.0 244 5-302 58-367 (418)
54 TIGR01430 aden_deam adenosine 98.0 0.0026 5.6E-08 60.0 23.6 128 132-299 171-311 (324)
55 PRK05451 dihydroorotase; Provi 98.0 0.0021 4.6E-08 61.3 21.5 121 5-155 9-140 (345)
56 cd01313 Met_dep_hydrolase_E Me 98.0 0.0071 1.5E-07 59.2 25.6 134 133-302 207-367 (418)
57 PRK12393 amidohydrolase; Provi 97.9 0.01 2.3E-07 58.7 26.6 136 133-303 218-376 (457)
58 PLN02795 allantoinase 97.9 0.001 2.2E-08 66.8 19.5 255 5-302 100-428 (505)
59 cd01302 Cyclic_amidohydrolases 97.9 0.0027 5.8E-08 60.4 21.3 249 5-303 6-288 (337)
60 PRK10027 cryptic adenine deami 97.9 0.0026 5.6E-08 64.9 22.1 238 5-304 85-332 (588)
61 TIGR00856 pyrC_dimer dihydroor 97.9 0.0012 2.6E-08 63.0 18.8 119 7-156 8-138 (341)
62 cd01320 ADA Adenosine deaminas 97.9 0.0048 1E-07 58.2 22.7 125 133-298 173-310 (325)
63 TIGR01224 hutI imidazoloneprop 97.9 0.0057 1.2E-07 58.7 22.7 132 134-303 198-335 (377)
64 PRK07203 putative chlorohydrol 97.8 0.01 2.2E-07 58.5 23.7 93 133-227 205-314 (442)
65 PRK09061 D-glutamate deacylase 97.8 0.0028 6.1E-08 63.7 19.4 79 92-180 166-255 (509)
66 PRK07572 cytosine deaminase; V 97.8 0.0035 7.5E-08 61.5 19.7 94 132-227 190-311 (426)
67 PRK06846 putative deaminase; V 97.8 0.013 2.9E-07 57.1 23.6 95 132-228 205-314 (410)
68 PRK08417 dihydroorotase; Provi 97.7 0.003 6.4E-08 61.3 18.5 115 5-155 31-152 (386)
69 PRK08418 chlorohydrolase; Prov 97.7 0.0075 1.6E-07 58.9 20.9 94 132-228 189-314 (408)
70 PRK06886 hypothetical protein; 97.7 0.02 4.2E-07 54.5 22.7 218 35-302 74-328 (329)
71 PRK05985 cytosine deaminase; P 97.7 0.004 8.6E-08 60.3 18.5 94 133-228 191-299 (391)
72 PRK09358 adenosine deaminase; 97.7 0.018 3.9E-07 54.7 22.4 125 133-298 182-319 (340)
73 COG1001 AdeC Adenine deaminase 97.6 0.0057 1.2E-07 61.3 19.0 236 5-306 78-327 (584)
74 PRK09357 pyrC dihydroorotase; 97.6 0.027 5.9E-07 55.0 23.0 120 5-155 54-181 (423)
75 PRK09229 N-formimino-L-glutama 97.6 0.074 1.6E-06 52.7 26.2 93 133-228 216-325 (456)
76 TIGR02318 phosphono_phnM phosp 97.6 0.023 5E-07 54.9 21.7 125 133-302 209-340 (376)
77 PRK02382 dihydroorotase; Provi 97.5 0.0052 1.1E-07 60.6 17.0 124 5-156 55-184 (443)
78 cd01315 L-HYD_ALN L-Hydantoina 97.5 0.025 5.4E-07 55.7 21.8 34 268-302 340-373 (447)
79 TIGR02033 D-hydantoinase D-hyd 97.5 0.024 5.1E-07 55.9 21.1 129 5-154 52-184 (454)
80 PRK09230 cytosine deaminase; P 97.4 0.017 3.7E-07 56.8 19.4 141 131-303 193-365 (426)
81 cd01314 D-HYD D-hydantoinases 97.4 0.055 1.2E-06 53.2 23.1 128 5-154 52-183 (447)
82 PRK08323 phenylhydantoinase; V 97.4 0.053 1.1E-06 53.5 22.8 129 5-155 50-182 (459)
83 PLN02599 dihydroorotase 97.4 0.04 8.6E-07 53.1 21.2 146 133-302 136-323 (364)
84 PRK15446 phosphonate metabolis 97.4 0.062 1.3E-06 52.1 22.5 125 133-303 214-345 (383)
85 TIGR00857 pyrC_multi dihydroor 97.4 0.064 1.4E-06 52.4 22.8 122 5-155 40-169 (411)
86 PRK06189 allantoinase; Provisi 97.3 0.059 1.3E-06 53.3 21.7 149 129-302 215-373 (451)
87 TIGR03178 allantoinase allanto 97.3 0.047 1E-06 53.8 20.6 122 5-155 52-183 (443)
88 TIGR03314 Se_ssnA putative sel 97.3 0.039 8.5E-07 54.4 19.7 93 133-227 204-313 (441)
89 cd01316 CAD_DHOase The eukaryo 97.1 0.12 2.7E-06 49.3 20.4 243 5-303 7-282 (344)
90 PRK07627 dihydroorotase; Provi 97.1 0.095 2.1E-06 51.5 19.9 122 5-155 56-183 (425)
91 cd01296 Imidazolone-5PH Imidaz 97.0 0.016 3.6E-07 55.4 14.1 132 132-302 192-330 (371)
92 cd01309 Met_dep_hydrolase_C Me 97.0 0.015 3.2E-07 55.8 13.7 128 135-303 182-321 (359)
93 PRK09236 dihydroorotase; Revie 97.0 0.33 7.1E-06 47.9 23.2 146 131-302 214-368 (444)
94 PRK08044 allantoinase; Provisi 97.0 0.11 2.5E-06 51.3 19.8 35 267-302 341-375 (449)
95 cd01318 DHOase_IIb Dihydroorot 97.0 0.11 2.4E-06 49.9 19.1 261 5-303 7-308 (361)
96 COG0402 SsnA Cytosine deaminas 96.9 0.037 8E-07 54.2 15.9 95 132-228 197-308 (421)
97 cd00854 NagA N-acetylglucosami 96.9 0.18 3.8E-06 48.7 20.1 153 136-302 175-344 (374)
98 cd01300 YtcJ_like YtcJ_like me 96.7 0.041 8.9E-07 54.7 14.0 70 132-201 294-370 (479)
99 PRK09356 imidazolonepropionase 96.6 0.054 1.2E-06 52.5 14.1 132 133-302 222-360 (406)
100 PRK13207 ureC urease subunit a 96.6 0.02 4.4E-07 57.9 11.2 62 133-198 228-298 (568)
101 cd00375 Urease_alpha Urease al 96.6 0.018 3.8E-07 58.1 10.7 108 5-155 130-250 (567)
102 COG0044 PyrC Dihydroorotase an 96.6 0.17 3.7E-06 49.9 17.4 120 5-156 54-181 (430)
103 PRK06151 N-ethylammeline chlor 96.4 0.11 2.4E-06 51.9 15.5 135 132-303 220-385 (488)
104 KOG4245 Predicted metal-depend 96.3 0.018 3.8E-07 50.2 7.8 75 63-155 59-133 (297)
105 PRK13308 ureC urease subunit a 96.3 0.015 3.4E-07 58.5 8.2 108 5-155 134-250 (569)
106 PRK14085 imidazolonepropionase 96.3 0.099 2.1E-06 50.5 13.6 132 133-302 207-344 (382)
107 PRK09060 dihydroorotase; Valid 96.2 1.1 2.3E-05 44.3 21.0 39 5-51 57-95 (444)
108 PRK13985 ureB urease subunit b 96.2 0.027 5.9E-07 56.7 9.4 109 5-156 130-251 (568)
109 TIGR01792 urease_alph urease, 96.2 0.03 6.4E-07 56.8 9.7 37 132-169 226-265 (567)
110 PRK13404 dihydropyrimidinase; 96.2 1.2 2.6E-05 44.5 21.1 230 36-301 141-384 (477)
111 PRK09059 dihydroorotase; Valid 96.1 0.093 2E-06 51.7 12.8 120 5-155 61-188 (429)
112 PRK07575 dihydroorotase; Provi 96.1 1.4 3E-05 43.5 21.0 150 127-302 206-362 (438)
113 PRK07328 histidinol-phosphatas 96.1 1 2.2E-05 41.4 18.8 192 4-228 1-232 (269)
114 PRK04250 dihydroorotase; Provi 95.9 1.9 4.2E-05 42.0 21.6 34 267-302 294-327 (398)
115 cd01304 FMDH_A Formylmethanofu 95.8 0.21 4.6E-06 50.3 13.8 51 132-182 208-275 (541)
116 PRK11170 nagA N-acetylglucosam 95.7 2.1 4.6E-05 41.5 22.1 268 5-303 54-347 (382)
117 PRK13206 ureC urease subunit a 95.7 0.025 5.5E-07 57.2 6.9 24 133-156 234-257 (573)
118 PTZ00124 adenosine deaminase; 95.7 1.2 2.6E-05 42.9 18.0 122 134-297 207-345 (362)
119 PRK00369 pyrC dihydroorotase; 95.6 1.6 3.5E-05 42.4 19.0 39 5-51 48-86 (392)
120 PRK13404 dihydropyrimidinase; 95.6 0.55 1.2E-05 46.9 16.1 129 5-155 55-188 (477)
121 TIGR03121 one_C_dehyd_A formyl 95.5 1.9 4.2E-05 43.8 19.3 24 279-303 428-451 (556)
122 cd00443 ADA_AMPD Adenosine/AMP 95.4 0.77 1.7E-05 43.0 15.4 142 109-298 135-290 (305)
123 COG2355 Zn-dependent dipeptida 95.4 0.37 8E-06 45.3 12.9 131 136-300 152-308 (313)
124 cd01306 PhnM PhnM is believed 95.4 0.91 2E-05 43.1 15.7 125 133-303 163-294 (325)
125 PRK00912 ribonuclease P protei 95.3 2 4.4E-05 38.6 18.9 85 182-302 120-217 (237)
126 TIGR02022 hutF formiminoglutam 95.2 0.95 2.1E-05 44.8 15.9 93 133-228 216-325 (455)
127 PF07969 Amidohydro_3: Amidohy 94.8 0.46 1E-05 45.7 12.5 133 135-304 227-390 (404)
128 PRK13309 ureC urease subunit a 94.8 0.17 3.7E-06 51.5 9.5 122 5-169 134-270 (572)
129 PRK08392 hypothetical protein; 94.7 2.5 5.5E-05 37.4 15.9 34 7-50 1-34 (215)
130 PF01979 Amidohydro_1: Amidohy 94.6 1.2 2.6E-05 41.3 14.3 67 133-199 144-233 (333)
131 COG0418 PyrC Dihydroorotase [N 94.0 1.4 3.1E-05 41.1 12.7 152 132-307 117-309 (344)
132 PF01244 Peptidase_M19: Membra 93.9 0.24 5.1E-06 46.9 7.9 92 181-300 214-319 (320)
133 PRK08609 hypothetical protein; 93.9 5.6 0.00012 40.7 18.3 36 5-50 334-369 (570)
134 PLN02303 urease 93.7 0.17 3.6E-06 53.2 6.9 24 132-155 496-519 (837)
135 TIGR00221 nagA N-acetylglucosa 93.6 7.5 0.00016 37.7 24.7 267 5-302 57-349 (380)
136 PF00962 A_deaminase: Adenosin 93.5 4 8.6E-05 38.4 15.5 157 92-298 148-317 (331)
137 COG1574 Predicted metal-depend 93.3 2 4.3E-05 43.5 13.6 99 130-230 318-440 (535)
138 PRK08123 histidinol-phosphatas 92.6 8.1 0.00018 35.4 16.5 39 4-50 1-39 (270)
139 cd01301 rDP_like renal dipepti 92.3 0.85 1.8E-05 43.0 9.0 130 137-298 158-309 (309)
140 COG1228 HutI Imidazolonepropio 91.9 3.1 6.8E-05 40.7 12.7 125 136-302 223-356 (406)
141 TIGR01856 hisJ_fam histidinol 91.0 12 0.00026 33.9 16.9 194 7-228 1-240 (253)
142 cd01321 ADGF Adenosine deamina 90.8 15 0.00033 35.1 16.0 144 109-299 162-328 (345)
143 PRK09856 fructoselysine 3-epim 90.7 12 0.00026 34.0 14.7 138 30-169 13-173 (275)
144 PRK09248 putative hydrolase; V 90.3 13 0.00029 33.4 17.5 38 5-51 3-40 (246)
145 TIGR01212 radical SAM protein, 89.4 14 0.0003 34.5 14.3 158 54-228 93-266 (302)
146 COG0804 UreC Urea amidohydrola 89.1 1.4 3.1E-05 42.6 7.2 116 7-165 132-265 (568)
147 smart00481 POLIIIAc DNA polyme 89.1 2.2 4.8E-05 30.1 6.7 52 8-67 1-53 (67)
148 COG4464 CapC Capsular polysacc 88.5 0.51 1.1E-05 41.8 3.6 38 6-51 1-41 (254)
149 COG0329 DapA Dihydrodipicolina 86.9 26 0.00056 32.8 14.3 136 31-191 26-178 (299)
150 PRK05588 histidinol-phosphatas 86.6 4.8 0.0001 36.5 9.0 24 131-154 164-187 (255)
151 PF03102 NeuB: NeuB family; I 86.5 3.9 8.5E-05 37.1 8.3 65 136-201 103-180 (241)
152 PF02811 PHP: PHP domain; Int 85.4 3 6.4E-05 34.8 6.6 62 7-76 1-64 (175)
153 TIGR03569 NeuB_NnaB N-acetylne 85.1 16 0.00035 34.8 12.0 64 137-200 124-201 (329)
154 TIGR03234 OH-pyruv-isom hydrox 84.9 28 0.00062 31.1 16.2 134 30-169 14-169 (254)
155 PRK07945 hypothetical protein; 84.7 37 0.00081 32.3 17.4 82 183-300 248-333 (335)
156 PF02679 ComA: (2R)-phospho-3- 84.4 20 0.00044 32.6 11.7 169 40-228 10-208 (244)
157 PRK06361 hypothetical protein; 84.2 5 0.00011 35.2 7.7 91 175-301 117-210 (212)
158 PRK03620 5-dehydro-4-deoxygluc 84.1 37 0.00079 31.7 15.1 136 31-191 29-178 (303)
159 PRK13209 L-xylulose 5-phosphat 83.8 34 0.00074 31.1 14.3 137 30-169 21-179 (283)
160 TIGR00677 fadh2_euk methylenet 83.2 10 0.00022 35.2 9.6 101 31-150 75-193 (281)
161 PRK02925 glucuronate isomerase 82.6 1.2 2.5E-05 44.1 3.2 44 2-50 24-75 (466)
162 PRK09432 metF 5,10-methylenete 81.8 9.3 0.0002 35.8 8.8 103 31-152 98-210 (296)
163 TIGR00676 fadh2 5,10-methylene 81.5 10 0.00023 34.8 9.0 101 31-150 74-189 (272)
164 PF00701 DHDPS: Dihydrodipicol 81.5 44 0.00095 30.8 14.6 135 31-191 23-175 (289)
165 TIGR03249 KdgD 5-dehydro-4-deo 81.5 45 0.00098 30.9 14.9 135 31-191 27-176 (296)
166 cd03465 URO-D_like The URO-D _ 81.3 24 0.00051 33.0 11.6 93 132-228 207-312 (330)
167 cd00408 DHDPS-like Dihydrodipi 81.1 44 0.00095 30.5 15.6 138 31-192 19-172 (281)
168 COG1387 HIS2 Histidinol phosph 81.1 42 0.0009 30.2 15.4 35 6-50 2-36 (237)
169 cd00951 KDGDH 5-dehydro-4-deox 80.2 50 0.0011 30.6 15.2 134 31-191 22-171 (289)
170 PRK09997 hydroxypyruvate isome 79.9 46 0.00099 30.0 12.9 144 30-179 15-183 (258)
171 TIGR03586 PseI pseudaminic aci 79.4 42 0.00091 31.9 12.4 63 137-200 125-200 (327)
172 PF02614 UxaC: Glucuronate iso 78.3 0.64 1.4E-05 46.2 -0.2 25 130-154 273-297 (462)
173 cd00950 DHDPS Dihydrodipicolin 76.9 60 0.0013 29.7 15.0 138 31-191 22-174 (284)
174 PRK07203 putative chlorohydrol 76.7 79 0.0017 31.0 15.0 50 147-200 256-311 (442)
175 PLN02591 tryptophan synthase 76.0 53 0.0011 30.0 11.7 38 31-68 94-131 (250)
176 KOG2584 Dihydroorotase and rel 76.0 28 0.00061 34.3 10.1 22 281-303 374-395 (522)
177 PF13147 Amidohydro_4: Amidohy 75.7 56 0.0012 28.8 18.2 34 267-302 256-289 (304)
178 cd03308 CmuA_CmuC_like CmuA_Cm 75.0 52 0.0011 31.8 12.0 95 132-228 254-358 (378)
179 PF13594 Amidohydro_5: Amidohy 74.8 3.2 6.9E-05 29.4 2.8 12 5-16 35-46 (68)
180 PRK13210 putative L-xylulose 5 74.7 66 0.0014 29.1 14.2 134 30-169 16-174 (284)
181 COG1904 UxaC Glucuronate isome 74.7 3 6.6E-05 40.6 3.3 61 2-68 23-91 (463)
182 CHL00200 trpA tryptophan synth 74.0 73 0.0016 29.3 12.2 75 31-120 107-181 (263)
183 PRK11148 cyclic 3',5'-adenosin 73.9 71 0.0015 29.1 13.6 125 31-168 41-194 (275)
184 cd06533 Glyco_transf_WecG_TagA 73.1 57 0.0012 27.7 13.3 99 32-157 35-135 (171)
185 COG1816 Add Adenosine deaminas 72.2 75 0.0016 30.5 12.1 137 115-297 172-321 (345)
186 PRK13111 trpA tryptophan synth 72.0 80 0.0017 28.9 12.6 38 31-68 105-142 (258)
187 TIGR01431 adm_rel adenosine de 71.6 1E+02 0.0022 30.9 13.5 106 109-228 289-414 (479)
188 PRK03170 dihydrodipicolinate s 71.4 85 0.0018 28.9 15.2 137 31-191 23-175 (292)
189 PRK01211 dihydroorotase; Provi 71.4 11 0.00024 36.9 6.5 39 5-51 47-85 (409)
190 cd00537 MTHFR Methylenetetrahy 70.3 22 0.00048 32.6 7.9 102 31-151 74-193 (274)
191 PF03808 Glyco_tran_WecB: Glyc 70.0 67 0.0015 27.2 13.7 101 32-158 37-138 (172)
192 PRK01060 endonuclease IV; Prov 69.8 86 0.0019 28.4 14.5 25 130-154 86-111 (281)
193 KOG2902 Dihydroorotase [Nucleo 69.4 38 0.00081 30.9 8.7 47 133-181 117-178 (344)
194 PRK05406 LamB/YcsF family prot 68.7 94 0.002 28.3 12.2 142 5-168 2-158 (246)
195 cd00952 CHBPH_aldolase Trans-o 68.5 88 0.0019 29.3 11.7 104 31-154 30-143 (309)
196 TIGR03314 Se_ssnA putative sel 67.7 1.3E+02 0.0028 29.6 15.8 147 31-200 137-310 (441)
197 cd00465 URO-D_CIMS_like The UR 67.3 1E+02 0.0022 28.3 12.1 92 132-228 185-286 (306)
198 TIGR00109 hemH ferrochelatase. 66.5 1.2E+02 0.0026 28.7 14.6 168 30-210 104-311 (322)
199 smart00518 AP2Ec AP endonuclea 66.4 73 0.0016 28.7 10.5 23 131-153 82-105 (273)
200 COG1820 NagA N-acetylglucosami 66.1 1.3E+02 0.0029 29.2 19.0 266 5-303 53-346 (380)
201 cd00019 AP2Ec AP endonuclease 66.1 78 0.0017 28.7 10.7 136 30-168 10-166 (279)
202 TIGR00542 hxl6Piso_put hexulos 66.0 1E+02 0.0023 27.9 15.2 133 30-169 16-174 (279)
203 COG0191 Fba Fructose/tagatose 65.3 32 0.0007 32.0 7.8 78 58-155 7-84 (286)
204 COG0613 Predicted metal-depend 64.5 9.6 0.00021 34.9 4.2 36 4-49 1-36 (258)
205 PF01208 URO-D: Uroporphyrinog 64.4 42 0.0009 31.6 8.8 93 132-228 219-324 (343)
206 COG0685 MetF 5,10-methylenetet 64.0 31 0.00068 32.1 7.6 102 31-151 93-208 (291)
207 COG1456 CdhE CO dehydrogenase/ 63.2 1E+02 0.0022 29.7 10.7 87 49-167 140-226 (467)
208 COG2108 Uncharacterized conser 62.7 58 0.0012 31.0 8.9 50 8-68 110-164 (353)
209 COG0276 HemH Protoheme ferro-l 62.2 1.5E+02 0.0031 28.2 14.0 109 30-148 102-223 (320)
210 PRK07213 chlorohydrolase; Prov 61.1 1.3E+02 0.0029 28.7 11.7 58 139-200 218-283 (375)
211 COG5014 Predicted Fe-S oxidore 59.9 30 0.00066 29.9 6.0 53 173-228 70-129 (228)
212 PRK04326 methionine synthase; 59.3 1.6E+02 0.0034 27.7 12.2 94 133-228 193-300 (330)
213 TIGR00674 dapA dihydrodipicoli 59.3 1.5E+02 0.0032 27.3 15.0 103 31-153 20-131 (285)
214 cd03311 CIMS_C_terminal_like C 59.2 1.6E+02 0.0034 27.6 14.6 117 109-229 170-312 (332)
215 PF01261 AP_endonuc_2: Xylose 58.8 1.1E+02 0.0024 25.7 9.9 54 128-181 107-171 (213)
216 PF00290 Trp_syntA: Tryptophan 58.8 1.1E+02 0.0024 28.1 10.0 102 31-154 103-206 (259)
217 COG5016 Pyruvate/oxaloacetate 58.7 72 0.0016 31.3 9.0 103 32-155 100-208 (472)
218 COG1242 Predicted Fe-S oxidore 58.0 1.6E+02 0.0035 27.5 11.5 155 57-228 102-271 (312)
219 COG0159 TrpA Tryptophan syntha 57.2 1.6E+02 0.0035 27.1 11.4 103 30-153 109-212 (265)
220 COG1533 SplB DNA repair photol 57.0 1.3E+02 0.0028 28.2 10.4 72 92-168 67-139 (297)
221 PRK04147 N-acetylneuraminate l 57.0 1.6E+02 0.0035 27.1 14.8 137 31-191 25-178 (293)
222 TIGR03178 allantoinase allanto 56.8 1.9E+02 0.0041 28.4 12.2 151 127-302 210-370 (443)
223 PF04273 DUF442: Putative phos 56.6 6.3 0.00014 31.2 1.4 40 115-157 55-97 (110)
224 PRK09532 DNA polymerase III su 56.4 33 0.00072 37.1 7.1 64 4-76 1-65 (874)
225 TIGR00696 wecB_tagA_cpsF bacte 55.8 1.3E+02 0.0029 25.8 13.2 98 33-157 38-136 (177)
226 cd00953 KDG_aldolase KDG (2-ke 55.3 1.7E+02 0.0037 26.8 14.9 136 30-191 20-170 (279)
227 PRK05835 fructose-bisphosphate 55.0 1.9E+02 0.0041 27.3 14.8 55 136-194 194-249 (307)
228 PRK13995 potassium-transportin 54.1 16 0.00035 32.1 3.6 38 263-301 143-181 (203)
229 cd08582 GDPD_like_2 Glyceropho 53.2 57 0.0012 28.8 7.2 58 133-192 87-150 (233)
230 PRK14001 potassium-transportin 52.8 19 0.00042 31.3 3.9 38 263-301 133-171 (189)
231 TIGR01859 fruc_bis_ald_ fructo 51.9 83 0.0018 29.2 8.2 62 133-194 27-98 (282)
232 TIGR01496 DHPS dihydropteroate 51.6 1.9E+02 0.0041 26.3 11.7 27 129-155 57-84 (257)
233 PRK09195 gatY tagatose-bisphos 51.5 55 0.0012 30.5 6.9 62 133-194 29-98 (284)
234 PRK07135 dnaE DNA polymerase I 51.3 48 0.001 36.3 7.3 56 4-67 1-57 (973)
235 PRK00315 potassium-transportin 51.3 20 0.00043 31.4 3.7 38 263-301 133-171 (193)
236 TIGR01405 polC_Gram_pos DNA po 51.3 52 0.0011 37.0 7.7 55 4-66 102-157 (1213)
237 cd00958 DhnA Class I fructose- 51.2 1.7E+02 0.0038 25.8 12.6 95 128-226 104-217 (235)
238 PTZ00066 pyruvate kinase; Prov 51.2 1.1E+02 0.0023 31.1 9.3 104 31-153 211-315 (513)
239 PRK08645 bifunctional homocyst 51.2 71 0.0015 33.0 8.4 99 32-153 398-524 (612)
240 COG2089 SpsE Sialic acid synth 51.0 55 0.0012 31.1 6.8 66 135-201 136-214 (347)
241 PLN02765 pyruvate kinase 50.6 1.2E+02 0.0026 30.9 9.5 103 31-153 208-312 (526)
242 PRK08195 4-hyroxy-2-oxovalerat 50.3 2.3E+02 0.005 26.9 11.4 51 30-80 25-88 (337)
243 TIGR00681 kdpC K+-transporting 49.7 21 0.00046 31.0 3.6 38 263-301 131-169 (187)
244 PRK13997 potassium-transportin 49.4 22 0.00047 31.1 3.6 38 263-301 135-173 (193)
245 PRK07374 dnaE DNA polymerase I 48.6 54 0.0012 36.7 7.3 63 4-75 1-64 (1170)
246 PRK14003 potassium-transportin 48.4 26 0.00056 30.7 3.9 38 263-301 136-174 (194)
247 PLN02433 uroporphyrinogen deca 48.4 2.4E+02 0.0053 26.6 13.1 92 132-228 216-318 (345)
248 PRK14000 potassium-transportin 48.2 20 0.00042 31.2 3.2 37 263-300 132-169 (185)
249 PRK13996 potassium-transportin 48.2 23 0.0005 31.1 3.6 38 263-301 139-177 (197)
250 cd00954 NAL N-Acetylneuraminic 48.0 2.2E+02 0.0049 26.1 15.2 138 31-191 22-176 (288)
251 PRK00448 polC DNA polymerase I 47.8 59 0.0013 37.2 7.5 57 3-67 331-388 (1437)
252 PLN02540 methylenetetrahydrofo 47.8 1.4E+02 0.003 30.7 9.6 24 31-54 74-97 (565)
253 cd06564 GH20_DspB_LnbB-like Gl 47.5 1.9E+02 0.0042 27.1 10.2 78 116-198 163-240 (326)
254 PRK13399 fructose-1,6-bisphosp 47.5 50 0.0011 31.7 6.1 61 135-199 214-277 (347)
255 PRK13999 potassium-transportin 47.0 27 0.00058 30.8 3.8 37 263-300 142-179 (201)
256 PRK14002 potassium-transportin 46.9 27 0.00058 30.4 3.8 38 263-301 129-167 (186)
257 COG0191 Fba Fructose/tagatose 46.5 1E+02 0.0022 28.7 7.7 59 133-194 29-99 (286)
258 TIGR02313 HpaI-NOT-DapA 2,4-di 46.3 2.4E+02 0.0053 26.0 14.7 138 31-191 22-176 (294)
259 PRK12738 kbaY tagatose-bisphos 46.3 73 0.0016 29.7 6.9 62 133-194 29-98 (286)
260 PRK06826 dnaE DNA polymerase I 46.1 66 0.0014 35.9 7.5 39 4-50 3-41 (1151)
261 PRK09228 guanine deaminase; Pr 46.1 3E+02 0.0064 26.9 13.4 58 139-200 253-320 (433)
262 PF02007 MtrH: Tetrahydrometha 45.4 2.6E+02 0.0057 26.1 10.6 114 109-226 21-152 (296)
263 PRK08185 hypothetical protein; 45.2 84 0.0018 29.2 7.1 19 135-153 26-44 (283)
264 PRK05835 fructose-bisphosphate 45.2 82 0.0018 29.7 7.1 62 133-194 28-98 (307)
265 TIGR01463 mtaA_cmuA methyltran 45.1 2.4E+02 0.0053 26.4 10.5 56 132-191 219-275 (340)
266 PRK03692 putative UDP-N-acetyl 44.9 2.4E+02 0.0052 25.5 13.0 98 33-157 95-193 (243)
267 PRK07329 hypothetical protein; 44.7 2.3E+02 0.0051 25.4 13.1 23 132-154 164-186 (246)
268 PF14488 DUF4434: Domain of un 44.6 1.9E+02 0.0042 24.4 9.9 50 33-82 23-93 (166)
269 PRK06512 thiamine-phosphate py 43.9 2.1E+02 0.0045 25.4 9.3 83 128-223 53-138 (221)
270 PF00834 Ribul_P_3_epim: Ribul 43.8 1.4E+02 0.0031 26.1 8.1 81 143-227 54-138 (201)
271 COG0352 ThiE Thiamine monophos 43.8 2E+02 0.0043 25.5 9.0 84 132-228 51-136 (211)
272 COG1509 KamA Lysine 2,3-aminom 43.6 3.1E+02 0.0068 26.5 12.0 122 53-192 142-275 (369)
273 PRK09196 fructose-1,6-bisphosp 43.3 70 0.0015 30.7 6.4 60 135-199 214-277 (347)
274 PRK09856 fructoselysine 3-epim 43.0 2.5E+02 0.0054 25.2 16.5 87 129-219 86-202 (275)
275 PRK13125 trpA tryptophan synth 43.0 2.5E+02 0.0054 25.2 16.9 86 110-198 31-134 (244)
276 PF02581 TMP-TENI: Thiamine mo 42.8 2.1E+02 0.0045 24.2 11.7 89 128-227 38-126 (180)
277 TIGR01521 FruBisAldo_II_B fruc 42.5 62 0.0014 31.0 5.9 61 135-199 212-275 (347)
278 PRK12857 fructose-1,6-bisphosp 42.3 93 0.002 29.0 6.9 22 133-154 29-50 (284)
279 cd03312 CIMS_N_terminal_like C 42.1 3.2E+02 0.0069 26.2 11.1 95 131-229 214-324 (360)
280 PRK12737 gatY tagatose-bisphos 42.0 93 0.002 29.0 6.9 21 133-153 29-49 (284)
281 cd08562 GDPD_EcUgpQ_like Glyce 41.7 1.4E+02 0.0031 25.9 7.9 57 134-192 88-151 (229)
282 smart00195 DSPc Dual specifici 41.6 59 0.0013 25.9 5.0 33 130-162 62-94 (138)
283 TIGR01858 tag_bisphos_ald clas 41.4 1.1E+02 0.0023 28.5 7.2 62 133-194 27-96 (282)
284 PRK08610 fructose-bisphosphate 41.3 94 0.002 29.0 6.8 62 133-194 29-101 (286)
285 PRK07315 fructose-bisphosphate 41.3 90 0.0019 29.2 6.7 62 133-194 29-100 (293)
286 TIGR00683 nanA N-acetylneurami 41.1 2.9E+02 0.0064 25.5 14.9 136 31-192 22-177 (290)
287 TIGR01430 aden_deam adenosine 40.7 3E+02 0.0066 25.5 13.8 53 144-200 207-271 (324)
288 TIGR01521 FruBisAldo_II_B fruc 40.6 1.1E+02 0.0023 29.5 7.1 62 133-194 27-97 (347)
289 PLN02475 5-methyltetrahydropte 40.4 3.1E+02 0.0067 29.4 11.2 94 132-228 625-736 (766)
290 PRK13994 potassium-transportin 40.1 33 0.00071 30.7 3.3 37 263-300 163-200 (222)
291 PRK06801 hypothetical protein; 40.1 1.1E+02 0.0023 28.6 6.9 20 134-153 30-49 (286)
292 PRK00043 thiE thiamine-phospha 39.8 2.4E+02 0.0052 24.1 13.1 82 130-223 49-131 (212)
293 TIGR00693 thiE thiamine-phosph 39.6 2.4E+02 0.0051 24.0 13.4 86 127-223 38-123 (196)
294 PRK07709 fructose-bisphosphate 39.3 1.1E+02 0.0024 28.5 6.9 20 134-153 30-49 (285)
295 COG2145 ThiM Hydroxyethylthiaz 39.1 1.8E+02 0.0039 26.8 8.0 39 129-167 68-112 (265)
296 TIGR03849 arch_ComA phosphosul 38.3 3.1E+02 0.0067 24.9 13.9 20 209-228 177-196 (237)
297 cd07939 DRE_TIM_NifV Streptomy 38.1 3E+02 0.0066 24.8 12.1 112 31-165 21-146 (259)
298 cd00127 DSPc Dual specificity 37.7 71 0.0015 25.3 4.9 33 129-161 64-96 (139)
299 cd03309 CmuC_like CmuC_like. P 37.4 1.8E+02 0.0039 27.5 8.2 91 132-228 197-303 (321)
300 PF12085 DUF3562: Protein of u 37.2 81 0.0018 22.6 4.3 32 267-299 5-36 (66)
301 KOG4549 Magnesium-dependent ph 37.0 1.3E+02 0.0029 24.6 6.1 59 5-63 19-81 (144)
302 PRK14042 pyruvate carboxylase 36.9 2.6E+02 0.0056 29.0 9.7 38 32-69 98-137 (596)
303 PF00809 Pterin_bind: Pterin b 36.9 2.5E+02 0.0054 24.6 8.6 114 33-156 82-207 (210)
304 KOG3968 Atrazine chlorohydrola 36.8 4.3E+02 0.0093 26.1 11.2 139 132-303 219-379 (439)
305 PRK00957 methionine synthase; 36.4 3.5E+02 0.0076 25.0 12.5 81 145-228 189-282 (305)
306 TIGR02127 pyrF_sub2 orotidine 36.4 3.4E+02 0.0074 24.8 10.0 76 108-190 52-133 (261)
307 TIGR03573 WbuX N-acetyl sugar 36.4 3.8E+02 0.0083 25.4 11.0 25 133-157 147-171 (343)
308 TIGR01371 met_syn_B12ind 5-met 36.3 4.2E+02 0.0091 28.3 11.5 95 133-229 615-726 (750)
309 PF10543 ORF6N: ORF6N domain; 36.1 41 0.00089 25.3 3.0 39 271-310 14-53 (88)
310 PRK07226 fructose-bisphosphate 36.1 2.8E+02 0.006 25.3 9.1 61 129-192 122-194 (267)
311 TIGR00587 nfo apurinic endonuc 36.0 1.9E+02 0.004 26.4 7.9 28 30-57 11-38 (274)
312 PLN02461 Probable pyruvate kin 35.8 4.5E+02 0.0098 26.7 11.0 104 31-153 195-299 (511)
313 TIGR00683 nanA N-acetylneurami 35.6 3E+02 0.0065 25.4 9.3 36 127-163 52-88 (290)
314 COG0816 Predicted endonuclease 35.4 2.6E+02 0.0056 23.2 9.0 70 93-168 41-111 (141)
315 cd00947 TBP_aldolase_IIB Tagat 35.3 1.3E+02 0.0029 27.8 6.7 61 133-193 24-92 (276)
316 PRK13399 fructose-1,6-bisphosp 35.0 1.4E+02 0.0031 28.6 7.1 62 133-194 29-99 (347)
317 cd00945 Aldolase_Class_I Class 35.0 2.7E+02 0.0058 23.2 14.7 22 30-51 13-34 (201)
318 PF11220 DUF3015: Protein of u 34.9 60 0.0013 27.1 3.9 37 270-306 84-122 (144)
319 PRK07998 gatY putative fructos 34.9 1.3E+02 0.0028 28.0 6.6 62 133-194 29-98 (283)
320 PF08444 Gly_acyl_tr_C: Aralky 34.8 64 0.0014 24.6 3.8 56 113-168 19-74 (89)
321 PF02677 DUF208: Uncharacteriz 34.4 66 0.0014 27.7 4.3 74 126-200 35-110 (176)
322 PRK08185 hypothetical protein; 34.3 3.9E+02 0.0084 24.9 11.7 23 30-53 79-101 (283)
323 PRK10550 tRNA-dihydrouridine s 34.3 3.1E+02 0.0068 25.7 9.2 93 132-226 116-227 (312)
324 TIGR03249 KdgD 5-dehydro-4-deo 33.7 3.8E+02 0.0083 24.7 10.0 35 128-163 57-91 (296)
325 PF01207 Dus: Dihydrouridine s 33.6 2.1E+02 0.0045 26.8 8.0 92 133-226 108-216 (309)
326 PRK09230 cytosine deaminase; P 33.6 3.9E+02 0.0085 26.1 10.2 62 135-200 226-312 (426)
327 PRK00035 hemH ferrochelatase; 33.5 4.1E+02 0.0089 24.9 15.2 53 30-82 105-170 (333)
328 PRK05222 5-methyltetrahydropte 33.5 2.6E+02 0.0057 29.8 9.4 95 131-228 619-730 (758)
329 PRK15493 5-methylthioadenosine 33.2 4.7E+02 0.01 25.5 16.7 48 149-200 250-303 (435)
330 PRK00979 tetrahydromethanopter 33.2 4.2E+02 0.0092 25.0 11.9 104 109-218 26-148 (308)
331 PRK14042 pyruvate carboxylase 32.2 5.9E+02 0.013 26.4 11.6 40 30-69 26-75 (596)
332 PF00762 Ferrochelatase: Ferro 32.2 4.3E+02 0.0094 24.8 13.4 172 30-212 100-308 (316)
333 cd00453 FTBP_aldolase_II Fruct 31.9 1.7E+02 0.0038 27.9 7.0 66 133-198 24-116 (340)
334 cd04724 Tryptophan_synthase_al 31.9 3.8E+02 0.0082 24.0 11.8 48 31-79 92-139 (242)
335 PF01402 RHH_1: Ribbon-helix-h 31.8 1.2E+02 0.0026 18.5 4.2 32 264-296 6-37 (39)
336 TIGR01244 conserved hypothetic 31.6 58 0.0013 26.4 3.4 26 129-157 72-97 (135)
337 PF10094 DUF2332: Uncharacteri 31.4 1.4E+02 0.0029 28.7 6.3 68 110-179 188-269 (343)
338 TIGR00736 nifR3_rel_arch TIM-b 30.9 4E+02 0.0086 24.0 9.7 90 132-224 120-221 (231)
339 COG1038 PycA Pyruvate carboxyl 30.8 96 0.0021 33.3 5.4 97 31-154 68-166 (1149)
340 PRK13209 L-xylulose 5-phosphat 30.8 4E+02 0.0086 24.0 14.4 23 129-151 95-117 (283)
341 PRK03512 thiamine-phosphate py 30.5 3.7E+02 0.0081 23.6 9.8 84 130-226 47-132 (211)
342 PRK02308 uvsE putative UV dama 30.3 2.1E+02 0.0045 26.8 7.3 19 135-153 93-111 (303)
343 PF02669 KdpC: K+-transporting 30.3 62 0.0014 28.2 3.5 33 264-297 133-165 (188)
344 KOG0369 Pyruvate carboxylase [ 30.2 46 0.001 34.7 3.0 87 57-153 95-191 (1176)
345 PRK07084 fructose-bisphosphate 30.0 1.8E+02 0.004 27.6 6.8 21 133-153 35-55 (321)
346 PF02110 HK: Hydroxyethylthiaz 29.9 2.1E+02 0.0046 26.0 7.0 58 129-193 62-125 (246)
347 PTZ00300 pyruvate kinase; Prov 29.8 5.2E+02 0.011 25.8 10.2 103 31-153 149-252 (454)
348 PRK05672 dnaE2 error-prone DNA 29.8 1.6E+02 0.0036 32.6 7.3 55 5-67 4-59 (1046)
349 PRK13585 1-(5-phosphoribosyl)- 29.7 3.9E+02 0.0085 23.5 9.2 12 280-291 201-212 (241)
350 PRK00366 ispG 4-hydroxy-3-meth 29.7 2.7E+02 0.0058 26.9 7.8 127 36-195 48-175 (360)
351 cd08556 GDPD Glycerophosphodie 29.6 2.1E+02 0.0046 23.7 6.8 57 132-192 48-110 (189)
352 PRK12330 oxaloacetate decarbox 29.5 6.1E+02 0.013 25.7 11.0 39 31-69 98-138 (499)
353 PRK06806 fructose-bisphosphate 29.5 2E+02 0.0043 26.7 6.9 16 139-154 67-82 (281)
354 COG3142 CutC Uncharacterized p 29.4 48 0.001 29.9 2.6 56 29-84 127-188 (241)
355 PRK09195 gatY tagatose-bisphos 29.3 2.6E+02 0.0057 26.0 7.7 36 31-66 5-40 (284)
356 PRK13998 potassium-transportin 29.2 72 0.0016 27.8 3.6 34 263-297 131-164 (186)
357 PRK09196 fructose-1,6-bisphosp 29.2 2.1E+02 0.0045 27.5 7.1 62 133-194 29-99 (347)
358 PRK12581 oxaloacetate decarbox 29.2 5.2E+02 0.011 25.9 10.2 38 32-69 107-146 (468)
359 PF01717 Meth_synt_2: Cobalami 29.1 3E+02 0.0066 25.6 8.3 83 144-229 208-304 (324)
360 COG0821 gcpE 1-hydroxy-2-methy 29.0 2E+02 0.0043 27.6 6.7 102 36-168 42-144 (361)
361 PRK02308 uvsE putative UV dama 28.9 2.7E+02 0.0058 26.1 7.8 64 129-192 126-203 (303)
362 TIGR00167 cbbA ketose-bisphosp 28.3 2.1E+02 0.0045 26.7 6.9 21 133-153 29-49 (288)
363 PF09124 Endonuc-dimeris: T4 r 27.6 37 0.00081 23.3 1.3 26 115-142 27-52 (54)
364 PRK12331 oxaloacetate decarbox 27.6 5.8E+02 0.012 25.4 10.2 139 34-191 30-190 (448)
365 PRK14047 putative methyltransf 27.4 5.3E+02 0.011 24.3 10.2 113 110-226 27-157 (310)
366 PRK12737 gatY tagatose-bisphos 27.3 3.1E+02 0.0066 25.5 7.8 36 31-66 5-40 (284)
367 TIGR00594 polc DNA-directed DN 26.9 1.9E+02 0.0041 32.1 7.2 54 6-67 1-55 (1022)
368 PRK02615 thiamine-phosphate py 26.9 5E+02 0.011 24.9 9.3 24 131-154 186-209 (347)
369 PRK08005 epimerase; Validated 26.9 4.5E+02 0.0097 23.3 10.2 81 144-228 56-140 (210)
370 COG2108 Uncharacterized conser 26.8 5.7E+02 0.012 24.5 9.7 55 114-168 131-192 (353)
371 PF01116 F_bP_aldolase: Fructo 26.7 2.1E+02 0.0045 26.7 6.5 60 133-194 28-97 (287)
372 COG0036 Rpe Pentose-5-phosphat 26.6 1.8E+02 0.004 26.0 5.9 76 149-226 88-176 (220)
373 COG4981 Enoyl reductase domain 26.6 1.4E+02 0.0031 30.5 5.6 39 113-155 146-185 (717)
374 PRK05673 dnaE DNA polymerase I 26.5 1.8E+02 0.0039 32.6 7.0 54 6-67 2-56 (1135)
375 COG0673 MviM Predicted dehydro 26.5 2.6E+02 0.0056 25.8 7.4 58 34-103 82-142 (342)
376 COG0678 AHP1 Peroxiredoxin [Po 26.3 77 0.0017 26.8 3.2 26 28-53 57-82 (165)
377 cd04724 Tryptophan_synthase_al 26.3 4.7E+02 0.01 23.4 15.2 97 92-198 15-134 (242)
378 cd00954 NAL N-Acetylneuraminic 26.1 5.1E+02 0.011 23.7 10.6 26 128-154 53-78 (288)
379 PF03932 CutC: CutC family; I 25.9 4.6E+02 0.0099 23.1 8.7 164 30-215 8-191 (201)
380 COG0134 TrpC Indole-3-glycerol 25.9 4.8E+02 0.01 23.9 8.5 88 133-225 143-238 (254)
381 PRK14040 oxaloacetate decarbox 25.7 7.3E+02 0.016 25.7 10.8 38 32-69 99-138 (593)
382 PF13541 ChlI: Subunit ChlI of 25.6 51 0.0011 26.5 2.0 33 108-147 80-112 (121)
383 CHL00200 trpA tryptophan synth 25.5 4.7E+02 0.01 23.9 8.6 45 30-75 131-175 (263)
384 TIGR03572 WbuZ glycosyl amidat 25.5 4.6E+02 0.01 23.0 16.4 164 30-224 30-228 (232)
385 TIGR00612 ispG_gcpE 1-hydroxy- 25.5 4.8E+02 0.011 25.0 8.7 125 36-195 40-166 (346)
386 PF07611 DUF1574: Protein of u 25.2 1.4E+02 0.003 28.7 5.1 43 126-168 245-287 (345)
387 PLN02591 tryptophan synthase 25.2 5.2E+02 0.011 23.5 8.7 45 31-76 119-163 (250)
388 PRK06233 hypothetical protein; 24.8 4.2E+02 0.009 25.5 8.5 81 146-229 236-343 (372)
389 PRK14041 oxaloacetate decarbox 24.7 7.2E+02 0.016 24.9 10.6 37 32-68 97-135 (467)
390 cd06842 PLPDE_III_Y4yA_like Ty 24.5 2.6E+02 0.0057 27.3 7.2 52 143-201 32-89 (423)
391 KOG0564 5,10-methylenetetrahyd 24.5 2.5E+02 0.0054 28.4 6.8 23 31-53 93-115 (590)
392 cd05126 Mth938 Mth938 domain. 24.2 1.6E+02 0.0034 23.5 4.6 68 95-177 49-116 (117)
393 TIGR00629 uvde UV damage endon 24.2 3.2E+02 0.007 25.8 7.3 25 131-155 92-116 (312)
394 TIGR02967 guan_deamin guanine 24.0 6.3E+02 0.014 24.1 12.9 58 139-200 228-295 (401)
395 PF02796 HTH_7: Helix-turn-hel 24.0 52 0.0011 21.2 1.5 22 272-294 24-45 (45)
396 PRK09121 5-methyltetrahydropte 23.9 4.2E+02 0.009 25.2 8.2 93 132-229 188-313 (339)
397 COG0469 PykF Pyruvate kinase [ 23.8 7.6E+02 0.016 24.9 11.6 105 30-153 176-281 (477)
398 cd07944 DRE_TIM_HOA_like 4-hyd 23.5 2.2E+02 0.0047 26.0 6.0 12 135-146 140-151 (266)
399 cd08579 GDPD_memb_like Glycero 23.5 4.9E+02 0.011 22.5 8.2 55 134-191 84-145 (220)
400 PRK06687 chlorohydrolase; Vali 23.4 6.7E+02 0.015 24.1 15.3 49 148-200 248-302 (419)
401 cd01305 archeal_chlorohydrolas 23.3 2.3E+02 0.0051 25.3 6.2 55 142-200 160-220 (263)
402 COG1751 Uncharacterized conser 23.3 3.4E+02 0.0073 23.1 6.4 37 31-67 15-51 (186)
403 PF00325 Crp: Bacterial regula 23.2 1.1E+02 0.0025 18.5 2.7 21 272-293 5-25 (32)
404 COG0620 MetE Methionine syntha 23.0 3.1E+02 0.0067 26.1 7.1 94 132-228 195-305 (330)
405 TIGR01114 mtrH N5-methyltetrah 22.8 6.6E+02 0.014 23.8 9.9 113 109-225 26-156 (314)
406 PRK09282 pyruvate carboxylase 22.7 7.6E+02 0.016 25.5 10.3 38 32-69 98-137 (592)
407 PLN02762 pyruvate kinase compl 22.5 8.2E+02 0.018 24.8 10.4 105 31-153 205-310 (509)
408 TIGR03767 P_acnes_RR metalloph 22.5 1.1E+02 0.0023 30.9 3.9 40 129-168 322-379 (496)
409 PF13292 DXP_synthase_N: 1-deo 22.4 84 0.0018 29.0 3.0 37 115-154 233-269 (270)
410 PRK07998 gatY putative fructos 22.4 6.3E+02 0.014 23.5 10.8 22 30-52 85-106 (283)
411 PRK06520 5-methyltetrahydropte 22.3 3.6E+02 0.0079 25.9 7.5 21 209-229 320-340 (368)
412 cd01317 DHOase_IIa Dihydroorot 22.1 4.2E+02 0.009 25.2 8.0 152 128-302 167-325 (374)
413 PF06972 DUF1296: Protein of u 22.0 1.7E+02 0.0037 20.5 3.7 28 265-293 2-30 (60)
414 COG1229 FwdA Formylmethanofura 21.9 1.1E+02 0.0023 30.2 3.7 23 280-303 437-459 (575)
415 cd04726 KGPDC_HPS 3-Keto-L-gul 21.9 4.9E+02 0.011 22.0 8.7 99 110-223 26-133 (202)
416 PF13378 MR_MLE_C: Enolase C-t 21.7 67 0.0014 24.7 2.0 22 133-154 33-54 (111)
417 cd08560 GDPD_EcGlpQ_like_1 Gly 21.7 3.2E+02 0.007 26.2 7.0 60 131-192 149-223 (356)
418 PRK06739 pyruvate kinase; Vali 21.6 7.3E+02 0.016 23.9 11.0 104 31-153 167-271 (352)
419 COG0106 HisA Phosphoribosylfor 21.5 1.5E+02 0.0032 27.0 4.3 44 182-226 86-131 (241)
420 PRK12569 hypothetical protein; 21.5 2.3E+02 0.0049 25.9 5.5 68 5-83 3-72 (245)
421 cd08565 GDPD_pAtGDE_like Glyce 21.5 4.4E+02 0.0095 23.4 7.5 55 135-192 84-147 (235)
422 PRK15418 transcriptional regul 21.4 5.9E+02 0.013 23.9 8.7 38 31-68 45-82 (318)
423 PF13456 RVT_3: Reverse transc 21.1 75 0.0016 22.6 2.1 20 209-228 13-32 (87)
424 cd03413 CbiK_C Anaerobic cobal 21.0 2.3E+02 0.0051 21.8 4.9 8 72-79 66-73 (103)
425 KOG4127 Renal dipeptidase [Pos 20.9 4E+02 0.0088 25.9 7.2 21 279-300 369-389 (419)
426 KOG1530 Rhodanese-related sulf 20.9 1.2E+02 0.0025 25.0 3.1 41 142-182 56-100 (136)
427 PF10096 DUF2334: Uncharacteri 20.8 4.4E+02 0.0096 23.6 7.4 31 52-83 13-43 (243)
428 TIGR01949 AroFGH_arch predicte 20.7 3.2E+02 0.0069 24.6 6.5 141 30-191 36-189 (258)
429 PF03932 CutC: CutC family; I 20.7 2.1E+02 0.0046 25.1 5.1 61 22-82 119-185 (201)
430 PLN02225 1-deoxy-D-xylulose-5- 20.6 75 0.0016 33.5 2.6 38 114-154 323-362 (701)
431 cd08573 GDPD_GDE1 Glycerophosp 20.6 4.3E+02 0.0093 23.8 7.3 58 133-192 89-150 (258)
432 cd06563 GH20_chitobiase-like T 20.5 7.4E+02 0.016 23.5 12.5 59 129-198 201-259 (357)
433 PF13936 HTH_38: Helix-turn-he 20.5 1.5E+02 0.0032 19.0 3.1 24 270-294 21-44 (44)
434 PRK08445 hypothetical protein; 20.5 1.2E+02 0.0026 29.0 3.8 21 31-51 77-97 (348)
435 TIGR01520 FruBisAldo_II_A fruc 20.4 7.6E+02 0.016 23.8 9.1 23 134-156 87-109 (357)
436 PLN02898 HMP-P kinase/thiamin- 20.3 5.7E+02 0.012 25.6 8.8 25 130-154 335-359 (502)
437 smart00796 AHS1 Allophanate hy 20.3 72 0.0016 28.0 2.0 44 272-319 103-155 (201)
438 TIGR01108 oadA oxaloacetate de 20.2 9.7E+02 0.021 24.7 10.7 139 34-191 25-185 (582)
439 TIGR01182 eda Entner-Doudoroff 20.1 2.9E+02 0.0063 24.3 5.9 46 31-76 21-66 (204)
No 1
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-67 Score=475.63 Aligned_cols=254 Identities=39% Similarity=0.589 Sum_probs=229.5
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCccc
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKE 83 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~ 83 (319)
||+||+|||++...|. .+.++++++++++||..++++|++.+++..+++++++||++|+++|+||++ .
T Consensus 1 ~~liDtH~HL~~~~~~----------~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~G~HP~~--~ 68 (256)
T COG0084 1 MMLIDTHCHLDFEEFD----------EDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAVGVHPLD--A 68 (256)
T ss_pred CccEEeeeCCCchhhc----------CCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEEeeCCCc--c
Confidence 7999999999987775 799999999999999999999999999999999999999999999999999 2
Q ss_pred ccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHH
Q 020985 84 FEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAI 163 (319)
Q Consensus 84 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~i 163 (319)
.. ..++.+++|.+++.. +++++|||||||||++.....++.|+++|++||++|+++++||+||+|+|.++++++
T Consensus 69 ~~---~~~~~~~~l~~~~~~---~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~i 142 (256)
T COG0084 69 DE---HSEEDLEELEQLAEH---HPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEI 142 (256)
T ss_pred cc---ccHHHHHHHHHHHhc---CCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHH
Confidence 21 134778888888862 489999999999999855336889999999999999999999999999999999999
Q ss_pred HHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc-ccC-hhhHHHHhcCCCCCEEEcCCCCCccccccccccccc
Q 020985 164 VERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS-LKT-AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFV 241 (319)
Q Consensus 164 l~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~~~-~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~ 241 (319)
|++++. ..++|+|||||+.+++++++++|+||||||.+ +++ .+.+++++.+|+||||+|||+||++
T Consensus 143 L~~~~~-~~~gi~HcFsGs~e~a~~~~d~G~yisisG~itfk~a~~~~ev~~~iPldrLL~ETDsPyl~----------- 210 (256)
T COG0084 143 LKEEGA-PVGGVLHCFSGSAEEARKLLDLGFYISISGIVTFKNAEKLREVARELPLDRLLLETDAPYLA----------- 210 (256)
T ss_pred HHhcCC-CCCEEEEccCCCHHHHHHHHHcCeEEEECceeecCCcHHHHHHHHhCCHhHeEeccCCCCCC-----------
Confidence 999874 35889999999999999999999999999996 444 3688999999999999999999953
Q ss_pred cccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985 242 KSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 242 ~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~ 301 (319)
|.|+||| +|+|+++..|++.||++||++ .+++++++++|++++|++
T Consensus 211 ----P~p~rGk---------rNeP~~v~~v~~~iAelk~~~-~eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 211 ----PVPYRGK---------RNEPAYVRHVAEKLAELKGIS-AEEVAEITTENAKRLFGL 256 (256)
T ss_pred ----CcCCCCC---------CCCchHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcC
Confidence 4467876 999999999999999999999 999999999999999985
No 2
>PRK10425 DNase TatD; Provisional
Probab=100.00 E-value=1.1e-62 Score=449.23 Aligned_cols=255 Identities=35% Similarity=0.579 Sum_probs=222.5
Q ss_pred EEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCccccc
Q 020985 6 LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFE 85 (319)
Q Consensus 6 iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~ 85 (319)
+||+|||++...|. .++++++++++++||.+++++|+++++|.++.+++++||.+++++|+|||++.+..
T Consensus 1 ~iDtH~HL~~~~~~----------~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~ 70 (258)
T PRK10425 1 MFDIGVNLTSSQFA----------KDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQYPSCWSTAGVHPHDSSQWQ 70 (258)
T ss_pred CEEeeeCcCChhhh----------ccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeCcCccccCC
Confidence 58999999877664 68999999999999999999999999999999999999999999999999987542
Q ss_pred ccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHH
Q 020985 86 ESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVE 165 (319)
Q Consensus 86 ~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~ 165 (319)
++.++.|+++++ +++++|||||||||++ .....+.|+++|++||++|+++++||+||+|++.++++++|+
T Consensus 71 -----~~~~~~l~~~~~----~~~~vaIGEiGLDy~~-~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~ 140 (258)
T PRK10425 71 -----AATEEAIIELAA----QPEVVAIGECGLDFNR-NFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLE 140 (258)
T ss_pred -----HHHHHHHHHhcc----CCCEEEEeeeeecccc-CCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHH
Confidence 256777777664 5689999999999986 335678999999999999999999999999999999999999
Q ss_pred hccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccc--c-ChhhHHHHhcCCCCCEEEcCCCCCcccccccccccccc
Q 020985 166 RNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSL--K-TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVK 242 (319)
Q Consensus 166 ~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~--~-~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~ 242 (319)
++....+++|+|||+|+.+++++++++|+||||+|.++ + ..+++++++.+|+||||+|||+||+.|
T Consensus 141 ~~~~~~~~~i~H~fsG~~~~~~~~l~~G~~~si~g~i~~~~~~~~~~~~~~~ipldrlLlETDaP~l~P----------- 209 (258)
T PRK10425 141 PWLDKLPGAVLHCFTGTREEMQACLARGLYIGITGWVCDERRGLELRELLPLIPAERLLLETDAPYLLP----------- 209 (258)
T ss_pred HhccCCCCeEEEecCCCHHHHHHHHHCCCEEEECceeecccccHHHHHHHHhCChHHEEEeccCCCCCC-----------
Confidence 86333347899999999999999999999999999753 3 235689999999999999999999643
Q ss_pred ccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985 243 STWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 243 ~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~ 301 (319)
.|++|+ ++.++|+|+++.+|++.||+++|++ .+++++++++|++++|++
T Consensus 210 ----~~~~~~-----~~~~~n~P~~i~~v~~~iA~l~~~~-~~~v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 210 ----RDLTPK-----PASRRNEPAFLPHILQRIAHWRGED-AAWLAATTDANARTLFGL 258 (258)
T ss_pred ----CCcCCC-----CCCCCCCcHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHhCc
Confidence 344432 2234899999999999999999999 999999999999999974
No 3
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=100.00 E-value=2.3e-61 Score=440.97 Aligned_cols=255 Identities=27% Similarity=0.418 Sum_probs=224.4
Q ss_pred CCcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCcc
Q 020985 3 TIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCK 82 (319)
Q Consensus 3 ~m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~ 82 (319)
+|.+||+|||++...|+ .+.+.++++++++||..++++++++++|..++++++++|++++++|+|||+++
T Consensus 2 ~~~~iD~HcHl~~~~~~----------~~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~ 71 (258)
T PRK11449 2 ICRFIDTHCHFDFPPFS----------GDEEASLQRAAQAGVGKIIVPATEAENFARVLALAERYQPLYAALGLHPGMLE 71 (258)
T ss_pred CceEEEeccCCCChhhc----------cCHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHHHHhCCCEEEEEeeCcCccc
Confidence 36799999999987764 68999999999999999999999999999999999999999999999999987
Q ss_pred cccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHH
Q 020985 83 EFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCA 162 (319)
Q Consensus 83 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~ 162 (319)
... ++.++++++++.. +.++++|||||||||++. ....+.|+++|++||++|+++++||+||+|++.+++++
T Consensus 72 ~~~-----~~~~~~l~~~l~~--~~~~~~aIGEiGLD~~~~-~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~ 143 (258)
T PRK11449 72 KHS-----DVSLDQLQQALER--RPAKVVAVGEIGLDLFGD-DPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAM 143 (258)
T ss_pred cCC-----HHHHHHHHHHHHh--CCCCEEEEEecccCCCCC-CCCHHHHHHHHHHHHHHHHHhCCCEEEEecCccHHHHH
Confidence 543 2567777777652 233799999999999863 35678999999999999999999999999999999999
Q ss_pred HHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccc-c-ChhhHHHHhcCCCCCEEEcCCCCCcccccccccccc
Q 020985 163 IVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSL-K-TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISF 240 (319)
Q Consensus 163 il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~-~-~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~ 240 (319)
+|++++.. .++|+|||+|+.+++++++++|+||||+|.++ + +.+.+++++.+|+||||+|||+||+.|
T Consensus 144 il~~~~~~-~~~i~H~fsG~~~~a~~~l~~G~~iS~~g~it~~~~~~~~~~~~~ipldriL~ETD~P~l~p--------- 213 (258)
T PRK11449 144 HLKRHDLP-RTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPL--------- 213 (258)
T ss_pred HHHhcCCC-CCeEEEcCCCCHHHHHHHHHCCCEEEeCccccccCcHHHHHHHHhCChhhEEEecCCCCCCC---------
Confidence 99987532 36799999999999999999999999999864 3 456789999999999999999999532
Q ss_pred ccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985 241 VKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 241 ~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~ 301 (319)
.++||+ +|+|.++..+++.||++++++ ++++++++++|+.++|++
T Consensus 214 ------~~~~~~---------~n~p~~~~~~~~~ia~l~~~~-~~el~~~~~~N~~~lf~~ 258 (258)
T PRK11449 214 ------NGFQGQ---------PNRPEQAARVFDVLCELRPEP-ADEIAEVLLNNTYTLFNV 258 (258)
T ss_pred ------CCCCCC---------CCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHhCc
Confidence 345554 899999999999999999999 999999999999999974
No 4
>PRK10812 putative DNAse; Provisional
Probab=100.00 E-value=3e-61 Score=441.64 Aligned_cols=251 Identities=29% Similarity=0.468 Sum_probs=222.1
Q ss_pred CcEEeeccCCCCc---cccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCC
Q 020985 4 IRLIDIAVNFTDG---MFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTR 80 (319)
Q Consensus 4 m~iiD~H~Hl~~~---~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~ 80 (319)
|++||+|||++.. .|. .++++++++++++||..++++|+++++|.++++++++||++++++|+|||+
T Consensus 1 ~~~iDtH~Hl~~~~~~~~~----------~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~~ 70 (265)
T PRK10812 1 MFLVDSHCHLDGLDYQSLH----------KDVDDVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDNVVFSCGVHPLN 70 (265)
T ss_pred CceEEeccCCCCccchhhh----------cCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence 6899999999853 332 689999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHH
Q 020985 81 CKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADF 160 (319)
Q Consensus 81 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~ 160 (319)
+... ..+++|++++. +++++|||||||||++ ...+.+.|+++|++|+++|+++++||+||+|++.+++
T Consensus 71 ~~~~-------~~~~~l~~~~~----~~~vvaIGEiGLD~~~-~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~~~ 138 (265)
T PRK10812 71 QDEP-------YDVEELRRLAA----EEGVVAMGETGLDYYY-TPETKVRQQESFRHHIQIGRELNKPVIVHTRDARADT 138 (265)
T ss_pred CCCh-------hHHHHHHHHhc----CCCEEEEEeeecCcCC-CCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHH
Confidence 8531 45677777664 5789999999999986 3356899999999999999999999999999999999
Q ss_pred HHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc-ccC-hhhHHHHhcCCCCCEEEcCCCCCcccccccccc
Q 020985 161 CAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS-LKT-AENLDVVRGIPIERMMIETDSPYCEIKNAHAGI 238 (319)
Q Consensus 161 l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~~~-~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~ 238 (319)
+++|++++....++|+|||+|+.+++++++++|+|+||+|.+ +++ ..++++++.+|+||||+|||+||+.
T Consensus 139 l~iL~~~~~~~~~~v~H~fsG~~~~a~~~~~~G~~is~~g~~t~~~~~~~~~~~~~ipldrlLlETD~P~~~-------- 210 (265)
T PRK10812 139 LAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLA-------- 210 (265)
T ss_pred HHHHHhhcCCCCCEEEEeecCCHHHHHHHHHCCCEEEECeeeecCccHHHHHHHHhCChhhEEEecCCCCCC--------
Confidence 999998754334789999999999999999999999999975 443 4578999999999999999999954
Q ss_pred ccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985 239 SFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 239 ~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~ 301 (319)
|.|++|+ +|+|.++..+++.+|+++|++ .+++++++++|+.|+|++
T Consensus 211 -------p~~~~g~---------~n~P~~i~~v~~~ia~l~g~~-~eei~~~~~~N~~~lf~~ 256 (265)
T PRK10812 211 -------PVPHRGK---------ENQPAMVRDVAEYMAVLKGVS-VEELAQVTTDNFARLFHI 256 (265)
T ss_pred -------CcCCCCC---------CCCcHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHCC
Confidence 3345554 899999999999999999999 999999999999999987
No 5
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=100.00 E-value=1.6e-59 Score=428.88 Aligned_cols=252 Identities=31% Similarity=0.523 Sum_probs=213.5
Q ss_pred EeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCC-eEEeeecCCCCccccc
Q 020985 7 IDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGR-LFCTVGVHPTRCKEFE 85 (319)
Q Consensus 7 iD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~-i~~~~GiHP~~~~~~~ 85 (319)
||+|||++...|. .+.+++++++.++|+..++++++++++|..+.++++++|. +++++|+|||+++...
T Consensus 1 iD~H~Hl~~~~~~----------~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~ 70 (255)
T PF01026_consen 1 IDAHCHLDSPRFE----------EDRPEVLERAREAGVSAIIIVSTDPEDWERVLELASQYPDRVYPALGIHPWEAHEVN 70 (255)
T ss_dssp EEEEE-TTSGGGT----------TTHHHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHS
T ss_pred CcCccCCCChhhC----------cCHHHHHHHHHHcCCCEEEEcCCCHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhh
Confidence 8999999996553 6888999999999999999999999999999999999997 9999999999998743
Q ss_pred ccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHH
Q 020985 86 ESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVE 165 (319)
Q Consensus 86 ~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~ 165 (319)
+ +.++.|+++.. +++++++|||||||||++....+++.|+++|++||++|+++++||+||||++.++++++|+
T Consensus 71 ~-----~~~~~l~~l~~--~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~~~~l~il~ 143 (255)
T PF01026_consen 71 E-----EDLEELEELIN--LNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAHEELLEILK 143 (255)
T ss_dssp H-----HHHHHHHHHHH--HTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHH--hccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcHHHHHHHHH
Confidence 2 56677777611 2478999999999999765667899999999999999999999999999999999999999
Q ss_pred hccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccccc--ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccc
Q 020985 166 RNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLK--TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS 243 (319)
Q Consensus 166 ~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~--~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~ 243 (319)
+++.+..++|+|||+|+.+++++++++|+||||+|.++. +++.+++++.+|+||||+|||+||++|
T Consensus 144 ~~~~~~~~~i~H~f~g~~~~~~~~~~~g~~~S~~~~~~~~~~~~~~~~~~~ip~drillETD~P~~~~------------ 211 (255)
T PF01026_consen 144 EYGPPNLRVIFHCFSGSPEEAKKFLDLGCYFSFSGAITFKNSKKVRELIKAIPLDRILLETDAPYLAP------------ 211 (255)
T ss_dssp HTTGGTSEEEETT--S-HHHHHHHHHTTEEEEEEGGGGSTTSHHHHHHHHHS-GGGEEEE-BTTSSEC------------
T ss_pred hccccceeEEEecCCCCHHHHHHHHhcCceEEecccccccccHHHHHHHhcCChhhEEEcCCCCcCCc------------
Confidence 997433488999999999999999999999999998654 567889999999999999999999644
Q ss_pred cCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Q 020985 244 TWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFF 300 (319)
Q Consensus 244 ~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~ 300 (319)
.|++|+ .|+|.+++++++.+|++++++ .+++++++++|++|||+
T Consensus 212 ---~~~~~~---------~~~p~~i~~~~~~la~~~~~~-~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 212 ---DPYRGK---------PNEPSNIPKVAQALAEIKGIS-LEELAQIIYENAKRLFG 255 (255)
T ss_dssp ---TTSTTS---------E--GGGHHHHHHHHHHHHTST-HHHHHHHHHHHHHHHHT
T ss_pred ---cccCCC---------CCChHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhC
Confidence 344543 899999999999999999999 99999999999999996
No 6
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-55 Score=401.04 Aligned_cols=277 Identities=48% Similarity=0.755 Sum_probs=246.7
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhc-CCeEEeeecCCCCccc
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETD-GRLFCTVGVHPTRCKE 83 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~ 83 (319)
|+.|.|+|+..... ..+.+.++.++...|+...++++++..+|+.++++++++ +.+++++|+|||++.+
T Consensus 17 ~~~~~~~~~~~~~~----------~~d~s~v~~~a~~~~v~~~~v~gt~~~d~~~~~~l~~~y~~~v~~t~G~HP~~~~~ 86 (296)
T KOG3020|consen 17 MLEDIYCHIQAHPS----------DSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYPTFGVHPHFSQE 86 (296)
T ss_pred hhchhhhccccCCC----------CccchHHHHHHHhccceEEEEeCCCcchHHHHHHHHhhCCCceeeccCcCCCcccc
Confidence 56677777665433 367778999999999999999999999999999999999 6799999999999998
Q ss_pred ccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHH
Q 020985 84 FEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAI 163 (319)
Q Consensus 84 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~i 163 (319)
+.+...++.++++|+.+++. ...++++|||||||||.|..+.+.+.|+.+|++|++||.++++|++||+|.|.+++++|
T Consensus 87 ~~~~~~~~~~~~~L~~~~~~-~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a~~d~~eI 165 (296)
T KOG3020|consen 87 FSDQSRKEKFLDTLLSIIEN-GFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSAHEDLLEI 165 (296)
T ss_pred hhhccchhhHHHHHHHHHhh-cccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhhhHHHHHH
Confidence 76533345688899988875 33689999999999999877889999999999999999999999999999999999999
Q ss_pred HHhccCCCc-ceEEEeCCCCHHHHHHHHHCCCeEeeccccccChhhHHHHhcCCCCCEEEcCCCCCccccc-cccccccc
Q 020985 164 VERNKDRFT-GGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKN-AHAGISFV 241 (319)
Q Consensus 164 l~~~~~~~~-~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~~~~~~~l~~ip~drlLlETD~P~~~~~~-~~~~~~~~ 241 (319)
+++...... ++++|||+|+++.++++++.|+||||+|++++..+..++++.+|+||||+|||+||+.|++ ++.+.+|+
T Consensus 166 l~~~~~~~~~~vvvHsFtGs~e~~~~~lk~~~yig~~g~~~k~~e~~~vlr~iP~erlllETDsP~~~pk~~~~~~~~~~ 245 (296)
T KOG3020|consen 166 LKRFLPECHKKVVVHSFTGSAEEAQKLLKLGLYIGFTGCSLKTEENLEVLRSIPLERLLLETDSPYCGPKPSSHAGPKYV 245 (296)
T ss_pred HHHhccccCCceEEEeccCCHHHHHHHHHccEEecccceeeechhhHHHHhhCCHhHeeeccCCccccCCccccccchhh
Confidence 999876555 7899999999999999999999999999988878888999999999999999999999999 78888887
Q ss_pred cccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985 242 KSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 242 ~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~ 301 (319)
++. |+...+.+++|+|+++..+++.+|++++++ .++++.++++|+.|+|+.
T Consensus 246 ~~~--------~~~~~~~~~~neP~~~~~~~e~va~~k~~~-~ee~~~~~~~Nt~rl~~~ 296 (296)
T KOG3020|consen 246 KTL--------FSESYPLKGRNEPCNVLQVAEVVAEAKDLD-LEEVAEATYENTIRLFKL 296 (296)
T ss_pred hhh--------hhhhccccccCCchHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhcC
Confidence 763 334456668999999999999999999999 999999999999999974
No 7
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=100.00 E-value=1.1e-44 Score=328.49 Aligned_cols=250 Identities=37% Similarity=0.572 Sum_probs=213.9
Q ss_pred EEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCccccc
Q 020985 6 LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFE 85 (319)
Q Consensus 6 iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~ 85 (319)
+||+|||++...+. .+++++++++.++|++.+|++++++.+++.+.++++++|++++++|+|||+.....
T Consensus 1 ~iD~H~Hl~~~~~~----------~~~~~~~~~~~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~GihP~~~~~~~ 70 (252)
T TIGR00010 1 LIDAHCHLDFLDFE----------EDVEEVIERAKAAGVTAVVAVGTDLEDFLRALELAEKYPNVYAAVGVHPLDVDDDT 70 (252)
T ss_pred CEEeccCCCChhhc----------cCHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCEEEEEEeCcchhhcCC
Confidence 68999999876542 37899999999999999999999999999999999999999999999999876421
Q ss_pred ccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHH
Q 020985 86 ESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVE 165 (319)
Q Consensus 86 ~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~ 165 (319)
+..++++++++. ++++++|||+|+|++... ...+.|+++|++|+++|+++|+||++|++++..+++++++
T Consensus 71 -----~~~~~~l~~~l~----~~~~~~iGEiGld~~~~~-~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~~~~~~~l~ 140 (252)
T TIGR00010 71 -----KEDIKELERLAA----HPKVVAIGETGLDYYKAD-EYKRRQEEVFRAQLQLAEELNLPVIIHARDAEEDVLDILR 140 (252)
T ss_pred -----HHHHHHHHHHcc----CCCEEEEEecccCcCCCC-CCHHHHHHHHHHHHHHHHHhCCCeEEEecCccHHHHHHHH
Confidence 256677777764 578999999999986422 3367799999999999999999999999999999999999
Q ss_pred hccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc-ccC-hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccc
Q 020985 166 RNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS-LKT-AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS 243 (319)
Q Consensus 166 ~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~~~-~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~ 243 (319)
+++. ...+++|||+|+.+.+++++++|+|+|+++.. +++ +..+++++.+|.||||+|||+||+.|
T Consensus 141 ~~~~-~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~dril~~TD~p~~~~------------ 207 (252)
T TIGR00010 141 EEKP-KVGGVLHCFTGDAELAKKLLDLGFYISISGIVTFKNAKSLREVVRKIPLERLLVETDSPYLAP------------ 207 (252)
T ss_pred hcCC-CCCEEEEccCCCHHHHHHHHHCCCeEeeceeEecCCcHHHHHHHHhCCHHHeEecccCCCCCC------------
Confidence 9863 34778899999999999999999999999864 333 35779999999999999999999432
Q ss_pred cCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985 244 TWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 244 ~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~ 301 (319)
.+++| ..|.|.++.++++.+|.++|++ .+++.+++++|+.++|++
T Consensus 208 ---~~~~~---------~~~~p~~i~~~~~~~a~~~g~~-~~~~~~~~~~N~~~~~~~ 252 (252)
T TIGR00010 208 ---VPYRG---------KRNEPAFVRYTVEAIAEIKGMD-VEELAQITTKNAKRLFGL 252 (252)
T ss_pred ---CCCCC---------CCCCChhHHHHHHHHHHHhCcC-HHHHHHHHHHHHHHHhCc
Confidence 12233 2689999999999999999999 999999999999999975
No 8
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=100.00 E-value=1.1e-43 Score=321.49 Aligned_cols=249 Identities=39% Similarity=0.594 Sum_probs=213.4
Q ss_pred EEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCccccc
Q 020985 6 LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFE 85 (319)
Q Consensus 6 iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~ 85 (319)
|||+|||++...+. .+.+++++++.++||..++++++.+++++++.+++++++++++++|+||+++....
T Consensus 1 ~~D~H~H~~~~~~~----------~~~~~~l~~~~~~gv~~~v~~~~~~~~~~~~~~la~~~~~i~~~~G~hP~~~~~~~ 70 (251)
T cd01310 1 LIDTHCHLDFPQFD----------ADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYDNVYAAVGLHPHDADEHV 70 (251)
T ss_pred CEEeeeCCCchhhc----------cCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCeEEEEeeCcchhhcCC
Confidence 69999999986542 47789999999999999999999999999999999999999999999999987532
Q ss_pred ccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHH
Q 020985 86 ESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVE 165 (319)
Q Consensus 86 ~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~ 165 (319)
++.++++++++. .+.+.+|||||||+++.. .+.+.|+++|++|+++|+++++||++||+++..+++++++
T Consensus 71 -----~~~~~~l~~~~~----~~~~~~IGeiGld~~~~~-~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~~~~~~l~~ 140 (251)
T cd01310 71 -----DEDLDLLELLAA----NPKVVAIGEIGLDYYRDK-SPREVQKEVFRAQLELAKELNLPVVIHSRDAHEDVLEILK 140 (251)
T ss_pred -----HHHHHHHHHHhc----CCCEEEEEeeecCcCCCC-CCHHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHH
Confidence 245677777764 457999999999987532 3578999999999999999999999999999999999999
Q ss_pred hccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccccC--hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccc
Q 020985 166 RNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKT--AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS 243 (319)
Q Consensus 166 ~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~--~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~ 243 (319)
+++. ...+|+|||+|+.++++++++.|+|+|+++..... ...+++++.+|.||||+|||+|+..+.
T Consensus 141 ~~~~-~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~dril~~TD~p~~~~~----------- 208 (251)
T cd01310 141 EYGP-PKRGVFHCFSGSAEEAKELLDLGFYISISGIVTFKNANELREVVKEIPLERLLLETDSPYLAPV----------- 208 (251)
T ss_pred hcCC-CCCEEEEccCCCHHHHHHHHHcCCEEEeeeeeccCCCHHHHHHHHhCChHHEEEcccCCCCCCC-----------
Confidence 9872 34789999999999999999999999999875322 246789999999999999999994221
Q ss_pred cCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Q 020985 244 TWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFF 300 (319)
Q Consensus 244 ~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~ 300 (319)
..++ +.+.|.++..+++.+|+.+|++ .+++.+++++|+.++|+
T Consensus 209 ----~~~~---------~~~~~~~~~~~~~~la~~~gl~-~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 209 ----PFRG---------KRNEPAYVKHVAEKIAELKGIS-VEEVAEVTTENAKRLFG 251 (251)
T ss_pred ----CCCC---------CCCCChhHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHhC
Confidence 1111 3689999999999999999999 99999999999999985
No 9
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=100.00 E-value=1.5e-34 Score=268.77 Aligned_cols=237 Identities=16% Similarity=0.141 Sum_probs=185.2
Q ss_pred HHHHHHHHHcCCCEEEEeCCC--HHhHHHHHHHHHhcC-CeEEeeecCCCCcccc-cccCCCHHHHHHHHHHHHhccCCC
Q 020985 33 ATVLSRAWSSGVDRIIVTGGS--LEESKEALAIAETDG-RLFCTVGVHPTRCKEF-EESGDPEKHFQALLSLAKEGIEKG 108 (319)
Q Consensus 33 ~~vl~~~~~~Gv~~~v~~~~~--~~~~~~~~~l~~~~~-~i~~~~GiHP~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~ 108 (319)
...+++++++||..++.++++ ..++..+.+++++++ ++++++|+||+..... ......++..+.+.+.+.+.+..+
T Consensus 35 ~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 114 (293)
T cd00530 35 KEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGT 114 (293)
T ss_pred HHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCCCccChHHHhhCCHHHHHHHHHHHHHhccccC
Confidence 346788999999999999875 468999999999987 7999999999875311 000011122222222233222233
Q ss_pred --CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc---chHHHHHHHHhccCCCcc-eEEEeC-CC
Q 020985 109 --KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE---AAADFCAIVERNKDRFTG-GVTHSF-TG 181 (319)
Q Consensus 109 --~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~---a~~~~l~il~~~~~~~~~-~i~H~f-~g 181 (319)
++.+|||||+|+. ..+.|+++|++|+++|+++|+||+||+++ +..+++++|++.+....+ ++.||| ++
T Consensus 115 ~i~~~~IGEigld~~-----~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~ 189 (293)
T cd00530 115 GIKAGIIKEAGGSPA-----ITPLEEKVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRND 189 (293)
T ss_pred CcCceEEEEeecCCC-----CCHHHHHHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCC
Confidence 4578999999973 24789999999999999999999999997 789999999987643333 577999 78
Q ss_pred CHHHHHHHHHCCCeEeecccc-cc----------ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCccc
Q 020985 182 SAEDRDKLLTFNMYIGINGCS-LK----------TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKK 250 (319)
Q Consensus 182 ~~~~~~~~l~~g~y~s~sg~~-~~----------~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~ 250 (319)
+.+.+++++++|+|++|++.. +. ...++++++.+|+||||+|||+|++.+ .|++
T Consensus 190 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~---------------~~~~ 254 (293)
T cd00530 190 DPDYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSY---------------LEKR 254 (293)
T ss_pred CHHHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhh---------------hhhc
Confidence 999999999999999999864 22 122568899999999999999999532 1233
Q ss_pred ccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q 020985 251 EKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299 (319)
Q Consensus 251 ~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf 299 (319)
+ ++|.|.++..++..+++.+|++ .+++.+++++|+.++|
T Consensus 255 ~---------~~~~~~~~~~~~~~~~~~~g~~-~e~i~~~~~~N~~~lf 293 (293)
T cd00530 255 Y---------GGHGYDYILTRFIPRLRERGVT-EEQLDTILVENPARFL 293 (293)
T ss_pred c---------CCCChHHHHHHHHHHHHHcCCC-HHHHHHHHHHCHHHhC
Confidence 3 2799999999999999999999 9999999999999987
No 10
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=248.51 Aligned_cols=231 Identities=25% Similarity=0.380 Sum_probs=185.1
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCH------H----hHHHHHHH----HHhcC-C
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSL------E----ESKEALAI----AETDG-R 69 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~------~----~~~~~~~l----~~~~~-~ 69 (319)
|+||+|+|++.+.| .| ++.|+.+||..++.++.+| + -|++++.+ ++++. +
T Consensus 1 ~~iD~HiH~d~r~~-----------eD----lekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~ 65 (254)
T COG1099 1 MYIDSHIHLDVRGF-----------ED----LEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLK 65 (254)
T ss_pred CccccccccccccH-----------HH----HHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCce
Confidence 68999999999866 34 5788999999999887654 2 25555433 33443 5
Q ss_pred eEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcE
Q 020985 70 LFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPM 149 (319)
Q Consensus 70 i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv 149 (319)
+++++|+||..+... .+..+++|++++. +..++|||||||++. .+..+++|+.||+||++++.||
T Consensus 66 ~~vavGvHPr~iP~e-----~~~~l~~L~~~l~----~e~VvAiGEiGLe~~------t~~E~evf~~QL~LA~e~dvPv 130 (254)
T COG1099 66 LKVAVGVHPRAIPPE-----LEEVLEELEELLS----NEDVVAIGEIGLEEA------TDEEKEVFREQLELARELDVPV 130 (254)
T ss_pred eeEEeccCCCCCCch-----HHHHHHHHHhhcc----cCCeeEeeecccccC------CHHHHHHHHHHHHHHHHcCCcE
Confidence 899999999988743 2356667777664 567999999999964 2458899999999999999999
Q ss_pred EEEecc-----chHHHHHHHHhccCCCcceEE-EeCCCCHHHHHHHHHCCCeEeecccc--ccChhhHHHHhcCCCCCEE
Q 020985 150 FLHMRE-----AAADFCAIVERNKDRFTGGVT-HSFTGSAEDRDKLLTFNMYIGINGCS--LKTAENLDVVRGIPIERMM 221 (319)
Q Consensus 150 ~iH~r~-----a~~~~l~il~~~~~~~~~~i~-H~f~g~~~~~~~~l~~g~y~s~sg~~--~~~~~~~~~l~~ip~drlL 221 (319)
+|||.+ +...+++++.+.+.++..+++ |+ +.+++..+++.+||++++-.- +...+..++++....+||+
T Consensus 131 iVHTPr~nK~e~t~~ildi~~~~~l~~~lvvIDH~---N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~i 207 (254)
T COG1099 131 IVHTPRRNKKEATSKILDILIESGLKPSLVVIDHV---NEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERII 207 (254)
T ss_pred EEeCCCCcchhHHHHHHHHHHHcCCChhheehhcc---cHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhCcceEE
Confidence 999975 467899999988766555555 88 899999999999999998642 3345567999999999999
Q ss_pred EcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985 222 IETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 222 lETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~ 301 (319)
+.||+.+. ...|..+++++-.+ +.+|++ .+++.+..++|+.+||++
T Consensus 208 lnSD~~s~--------------------------------~sd~lavprtal~m-~~~gv~-~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 208 LNSDAGSA--------------------------------ASDPLAVPRTALEM-EERGVG-EEEIEKVVRENALSFYGL 253 (254)
T ss_pred Eecccccc--------------------------------cccchhhhHHHHHH-HHhcCC-HHHHHHHHHHHHHHHhCc
Confidence 99999983 35677888888877 557999 999999999999999987
Q ss_pred C
Q 020985 302 Q 302 (319)
Q Consensus 302 ~ 302 (319)
+
T Consensus 254 ~ 254 (254)
T COG1099 254 S 254 (254)
T ss_pred C
Confidence 4
No 11
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=99.94 E-value=4.5e-25 Score=195.89 Aligned_cols=256 Identities=20% Similarity=0.208 Sum_probs=190.0
Q ss_pred CCCCcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC----------CCHHhHHHHHHH----HH-
Q 020985 1 MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG----------GSLEESKEALAI----AE- 65 (319)
Q Consensus 1 m~~m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~----------~~~~~~~~~~~l----~~- 65 (319)
|.++.++|.|.|+++.. ++..+++++++++|.+++++++ +..++++++.++ ++
T Consensus 2 ~~~~~v~DnH~H~np~~------------gg~~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~ 69 (285)
T COG1831 2 RYDIPVTDNHFHLNPKN------------GGALEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEK 69 (285)
T ss_pred CcccceecceeeecCCc------------CcHHHHHHHHHHcCCcEEEEeecccccccCCCCcHHHHHHHHHHHHHHHHH
Confidence 35789999999999962 3467889999999999999874 345677665443 22
Q ss_pred ---hcC-CeEEeeecCCCCcccccccC-CCH---HHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 020985 66 ---TDG-RLFCTVGVHPTRCKEFEESG-DPE---KHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEK 137 (319)
Q Consensus 66 ---~~~-~i~~~~GiHP~~~~~~~~~~-~~~---~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~ 137 (319)
..+ ..++.+|+||..+..+.+.. .++ +.+..-.+++.+++.+++++||||+|..+|+.....++...++|+.
T Consensus 70 ~r~e~~~~~~~vvGvHPaE~~~l~e~~~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~ 149 (285)
T COG1831 70 IREEGPVEAYAVVGVHPAEVSRLAEAGRSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEY 149 (285)
T ss_pred HHHhcCceeEEEeccCHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHH
Confidence 234 36999999999887654432 122 3333444556666667899999999999998665667889999999
Q ss_pred HHHHHHcCCCcEEEEeccc----hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccccChhhHHHHh
Q 020985 138 QFELAYATKLPMFLHMREA----AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVR 213 (319)
Q Consensus 138 qlelA~~~~~Pv~iH~r~a----~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~~~~~~~l~ 213 (319)
.+++|++.++||++|+.+. ..++.+++++.+.++-++|.|+-++.. ..+-..|++-|+... .+.++++++
T Consensus 150 a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~~~~~VVkHha~p~v---~~~~~~Gi~pSV~as---r~~v~~a~~ 223 (285)
T COG1831 150 AMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGIKPYRVVKHHAPPLV---LKCEEVGIFPSVPAS---RKNVEDAAE 223 (285)
T ss_pred HHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCCCcceeEeecCCccc---hhhhhcCcCCccccc---HHHHHHHHh
Confidence 9999999999999999865 456778899988766678888866553 333347888888542 224567888
Q ss_pred cCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHH
Q 020985 214 GIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYH 293 (319)
Q Consensus 214 ~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~ 293 (319)
. ..|+|+|||+-. +|.++|.. | .|+.+++-.+.+.+--..+ .|.+.++..+
T Consensus 224 ~--g~~FmmETDyID---Dp~Rpgav-----L------------------~PktVPrr~~~i~~~g~~~-ee~vy~i~~E 274 (285)
T COG1831 224 L--GPRFMMETDYID---DPRRPGAV-----L------------------GPKTVPRRTREILEKGDLT-EEDVYRIHVE 274 (285)
T ss_pred c--CCceEeeccccc---CcccCCCc-----C------------------CccchhHHHHHHHHhcCCc-HHHHHHHHHh
Confidence 7 579999999987 33344432 3 3557776666666665678 9999999999
Q ss_pred HHHHhcCCCC
Q 020985 294 NTCRVFFPQD 303 (319)
Q Consensus 294 N~~rlf~~~~ 303 (319)
|..++|++..
T Consensus 275 ~pe~VYg~~~ 284 (285)
T COG1831 275 NPERVYGIEL 284 (285)
T ss_pred CHHHHhCccC
Confidence 9999999753
No 12
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.90 E-value=3.6e-22 Score=191.34 Aligned_cols=233 Identities=14% Similarity=0.213 Sum_probs=165.4
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcC-CeEEee-----ecC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAETDG-RLFCTV-----GVH 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~-~i~~~~-----GiH 77 (319)
-+||+|||+...... ...+.+. .+...||..++.+++ .+++++...+++++++ ++++++ |+|
T Consensus 51 G~ID~H~H~~~~~~~--------~~~~~~~---~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~ 119 (365)
T TIGR03583 51 GWIDDHTHCFPKSAL--------YYDEPDE---IGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLV 119 (365)
T ss_pred CEEEeeeccCCCccc--------ccCCHhH---hhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhcccc
Confidence 589999999843211 0134433 356779998887665 6778888888777776 566665 888
Q ss_pred CC-CcccccccCCCHHHHHHHHHHHHhccCCC-CEEE---------EEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 020985 78 PT-RCKEFEESGDPEKHFQALLSLAKEGIEKG-KVVA---------IGECGLDYDRLHFCPSEIQRKYFEKQFELAYATK 146 (319)
Q Consensus 78 P~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~a---------IGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~ 146 (319)
|. ...... +...+++++++.+ .+ .+++ |||+|||- .+ |.+|+..+ +++
T Consensus 120 ~~~~~~~~~-----~~~~~~l~~~~~~---~~~~vv~~~~~~t~~~i~E~gl~~-------~~-----~~~~l~~~-~~~ 178 (365)
T TIGR03583 120 AQDELADLS-----NLDASAVKQAVER---YPDFIVGLKARMSKSVVGDNGIEP-------LE-----IAKQIQQE-NLE 178 (365)
T ss_pred ChhhhhChH-----HhHHHHHHHHHHh---CcCcEEEEEEeecccccccCCcCH-------HH-----HHHHHHHh-cCC
Confidence 63 333221 1345666666653 33 3555 78988871 11 45567666 899
Q ss_pred CcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCH-----------HHHHHHHHCCCeEeec-cccccChhhHHHHhc
Q 020985 147 LPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSA-----------EDRDKLLTFNMYIGIN-GCSLKTAENLDVVRG 214 (319)
Q Consensus 147 ~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~-----------~~~~~~l~~g~y~s~s-g~~~~~~~~~~~l~~ 214 (319)
+||++|++++..+..++++.... ..++.|||+|+. +.+...+++|+|++++ |......+....++.
T Consensus 179 ~pv~vH~~~a~~~~~~i~~~~~~--g~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~hg~~~~~~~~~~~~~~ 256 (365)
T TIGR03583 179 LPLMVHIGSAPPELDEILALMEK--GDVLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHGTASFSFHVAEKAKR 256 (365)
T ss_pred CcEEEEeCCCccCHHHHHHHhcC--CCeeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeCCCCCCchHHHHHHHHh
Confidence 99999999998888888876532 246899999998 8899999999999998 654322222223332
Q ss_pred CCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccch-HHHHHHHHHHhcCCChHHHHHHHHHH
Q 020985 215 IPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCL-VRQVLEVVAGCKGINDIDQLSRTLYH 293 (319)
Q Consensus 215 ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~-l~~v~~~iA~~~~is~~e~~~~~~~~ 293 (319)
+++++|||+|++. .++ ..|.|.+ +..+++.++ .+|++ .+++.+.++.
T Consensus 257 ---~~~~~~td~~d~~------------------~~~---------~~~gp~~~l~~~~~~~~-~~g~~-~~ea~~~~t~ 304 (365)
T TIGR03583 257 ---AGIFPDTISTDIY------------------IRN---------RINGPVYSLATVMSKFL-ALGYS-LEEVIEKVTK 304 (365)
T ss_pred ---CCCCCcccccccc------------------cCC---------CccCccccHHHHHHHHH-HcCCC-HHHHHHHHHH
Confidence 5788999999941 122 2678888 999999999 57999 9999999999
Q ss_pred HHHHhcCCCC
Q 020985 294 NTCRVFFPQD 303 (319)
Q Consensus 294 N~~rlf~~~~ 303 (319)
|+.++|++..
T Consensus 305 npa~~~gl~~ 314 (365)
T TIGR03583 305 NAAEILKLTQ 314 (365)
T ss_pred HHHHHhCCCC
Confidence 9999999853
No 13
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.78 E-value=6.3e-17 Score=158.10 Aligned_cols=235 Identities=16% Similarity=0.181 Sum_probs=164.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC------CCHHhHHHHHHHHHhcC-CeEEeeecC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG------GSLEESKEALAIAETDG-RLFCTVGVH 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~------~~~~~~~~~~~l~~~~~-~i~~~~GiH 77 (319)
-+||+|+|+....+ +.+++.+.+...|+..++..+ ...+.++...+.++++| ++|.++
T Consensus 10 G~ID~H~Hi~~~~~------------~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~--- 74 (422)
T cd01295 10 GFIDAHLHIESSML------------TPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML--- 74 (422)
T ss_pred CEEEccCCcCCCCC------------ChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC---
Confidence 58999999988643 456678888889999998864 57788888888888887 465554
Q ss_pred CCCccccc-ccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc
Q 020985 78 PTRCKEFE-ESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA 156 (319)
Q Consensus 78 P~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a 156 (319)
|..+.... +..+..-.+++++++++ ++.++++||+ +||+... ...+.|.++++.|+++++||.+|++..
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~----~~~vvglgE~-md~~~v~-----~~~~~l~~~i~~A~~~g~~v~~Ha~g~ 144 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLE----HPEVVGLGEV-MDFPGVI-----EGDDEMLAKIQAAKKAGKPVDGHAPGL 144 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhc----CCCCcEEEEe-ccCcccc-----CCcHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 54333111 00000112566776664 4689999999 9986321 122468889999999999999999987
Q ss_pred h-HHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccccChhhHHHHhcCC---CCCEEEcCCCCCcccc
Q 020985 157 A-ADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIP---IERMMIETDSPYCEIK 232 (319)
Q Consensus 157 ~-~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~~~~~~~l~~ip---~drlLlETD~P~~~~~ 232 (319)
. .++..+++ .+... -| ++++.+++.+.+++|+|+++.+... ....+++++.++ ..+++++||+|...
T Consensus 145 ~~~~L~a~l~-aGi~~----dH-~~~~~eea~e~l~~G~~i~i~~g~~-~~~~~~~~~~l~~~~~~~i~l~TD~~~~~-- 215 (422)
T cd01295 145 SGEELNAYMA-AGIST----DH-EAMTGEEALEKLRLGMYVMLREGSI-AKNLEALLPAITEKNFRRFMFCTDDVHPD-- 215 (422)
T ss_pred CHHHHHHHHH-cCCCC----Cc-CCCcHHHHHHHHHCCCEEEEECccc-HhhHHHHHHhhhhccCCeEEEEcCCCCch--
Confidence 6 56666665 33211 24 7788999999999999999985422 233456667776 58999999998521
Q ss_pred ccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 233 NAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
+ + ..+ ..+..+++ ++..+|++ .+++.+..+.|+.++|++..
T Consensus 216 ~-----------~--~~~---------------g~~~~v~r-~a~~~g~s-~~eal~~aT~n~A~~~gl~~ 256 (422)
T cd01295 216 D-----------L--LSE---------------GHLDYIVR-RAIEAGIP-PEDAIQMATINPAECYGLHD 256 (422)
T ss_pred h-----------h--hhc---------------chHHHHHH-HHHHcCCC-HHHHHHHHhHHHHHHcCCCC
Confidence 0 1 001 24556664 45567999 99999999999999999743
No 14
>PRK09875 putative hydrolase; Provisional
Probab=99.74 E-value=9.3e-16 Score=142.25 Aligned_cols=262 Identities=13% Similarity=0.198 Sum_probs=168.9
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHH---HHHHHHcCCCEEEEeCC--CHHhHHHHHHHHHhcC-CeEEeeecC
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATV---LSRAWSSGVDRIIVTGG--SLEESKEALAIAETDG-RLFCTVGVH 77 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~v---l~~~~~~Gv~~~v~~~~--~~~~~~~~~~l~~~~~-~i~~~~GiH 77 (319)
+-+..+|=|+.... .+.-.+..|...+.+.+ +++++++|+..+|-++. --.+-..+.+++++.. +|+++.|+|
T Consensus 6 lG~tl~HEHl~~~~-~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y 84 (292)
T PRK09875 6 TGYTLAHEHLHIDL-SGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYY 84 (292)
T ss_pred CCcceecCCeEecC-hhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCC
Confidence 45677888886421 11111222333455544 46678899998887653 1345666777777765 688999986
Q ss_pred -----CCCcccccccCCCHHHHHHHHHHHHhccCC--CCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEE
Q 020985 78 -----PTRCKEFEESGDPEKHFQALLSLAKEGIEK--GKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMF 150 (319)
Q Consensus 78 -----P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~ 150 (319)
|.++...+ .++..+.+.+-+.+++.. -+.-.|||||.++.. ..+..+++|+++.+.+++.|.||+
T Consensus 85 ~~~~~p~~~~~~~----~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~----it~~E~kvl~Aaa~a~~~TG~pi~ 156 (292)
T PRK09875 85 QDAFFPEHVATRS----VQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGK----ITPLEEKVFIAAALAHNQTGRPIS 156 (292)
T ss_pred CCccCCHHHhcCC----HHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCC----CCHHHHHHHHHHHHHHHHHCCcEE
Confidence 33332221 122233444444444432 145679999999743 235788999999999999999999
Q ss_pred EEecc--chHHHHHHHHhccCCCcceEE-Ee-CCCCHHHHHHHHHCCCeEeecccc---ccC-hhhHHHHhcC---C-CC
Q 020985 151 LHMRE--AAADFCAIVERNKDRFTGGVT-HS-FTGSAEDRDKLLTFNMYIGINGCS---LKT-AENLDVVRGI---P-IE 218 (319)
Q Consensus 151 iH~r~--a~~~~l~il~~~~~~~~~~i~-H~-f~g~~~~~~~~l~~g~y~s~sg~~---~~~-~~~~~~l~~i---p-~d 218 (319)
+|+.. ...+++++|++.+.++.++++ |. .+.+.+..++++++|+|++|...- +.. .+..++++.+ + .|
T Consensus 157 ~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~d 236 (292)
T PRK09875 157 THTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLN 236 (292)
T ss_pred EcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCC
Confidence 99853 456789999998876567766 75 345789999999999999986431 222 2333455444 6 99
Q ss_pred CEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 020985 219 RMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRV 298 (319)
Q Consensus 219 rlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rl 298 (319)
|||+.+|..-..+ + .++. +.....-+..++-.+.+ +|++ .+++.+++.+|..|+
T Consensus 237 rilLS~D~~~~~~-------------~-~~~g----------g~G~~~i~~~~ip~L~~-~Gvs-e~~I~~m~~~NP~r~ 290 (292)
T PRK09875 237 RVMLSMDITRRSH-------------L-KANG----------GYGYDYLLTTFIPQLRQ-SGFS-QADVDVMLRENPSQF 290 (292)
T ss_pred eEEEeCCCCCccc-------------c-cccC----------CCChhHHHHHHHHHHHH-cCCC-HHHHHHHHHHCHHHH
Confidence 9999999853110 1 0111 11222234445554433 4999 999999999999999
Q ss_pred cC
Q 020985 299 FF 300 (319)
Q Consensus 299 f~ 300 (319)
|.
T Consensus 291 ~~ 292 (292)
T PRK09875 291 FQ 292 (292)
T ss_pred hC
Confidence 84
No 15
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.63 E-value=4.6e-14 Score=133.97 Aligned_cols=133 Identities=15% Similarity=0.195 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCH-----------HHHHHHHHCCCeEeec-cc-
Q 020985 135 FEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSA-----------EDRDKLLTFNMYIGIN-GC- 201 (319)
Q Consensus 135 f~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~-----------~~~~~~l~~g~y~s~s-g~- 201 (319)
++.++++|+++|+||++|++++..++.++++.... ..++.|||+|+. +.++++++.|+|++++ |.
T Consensus 151 l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l~~--g~~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~d~~~G~~ 228 (338)
T cd01307 151 LELAKKIAKEADLPLMVHIGSPPPILDEVVPLLRR--GDVLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGHGTA 228 (338)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHhcC--CCEEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEEEEeCCCCC
Confidence 77999999999999999999988777776665432 256889999986 7899999999999988 43
Q ss_pred cccChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccch-HHHHHHHHHHhcC
Q 020985 202 SLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCL-VRQVLEVVAGCKG 280 (319)
Q Consensus 202 ~~~~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~-l~~v~~~iA~~~~ 280 (319)
.+..+..+++++. ..--..++||.|+. + ..|.|.+ +..+++.+ ..+|
T Consensus 229 ~~~~~~~~~l~~~-G~~~~~lstD~~~~---------------------~---------~~~~p~~~l~~~l~~l-~~~g 276 (338)
T cd01307 229 SFSFRVARAAIAA-GLLPDTISSDIHGR---------------------N---------RTNGPVYALATTLSKL-LALG 276 (338)
T ss_pred chhHHHHHHHHHC-CCCCeeecCCcccc---------------------C---------CCCCccccHHHHHHHH-HHcC
Confidence 2211222344442 21111356666541 0 1356666 57888877 5579
Q ss_pred CChHHHHHHHHHHHHHHhcCCC
Q 020985 281 INDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 281 is~~e~~~~~~~~N~~rlf~~~ 302 (319)
++ .+++.++++.|+.++|++.
T Consensus 277 i~-~ee~~~~~T~NpA~~lgl~ 297 (338)
T cd01307 277 MP-LEEVIEAVTANPARMLGLA 297 (338)
T ss_pred CC-HHHHHHHHHHHHHHHcCCC
Confidence 99 9999999999999999984
No 16
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=99.59 E-value=2.8e-14 Score=129.89 Aligned_cols=227 Identities=16% Similarity=0.185 Sum_probs=138.9
Q ss_pred EeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC----C----------------HHhHHHHHHHHHh
Q 020985 7 IDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG----S----------------LEESKEALAIAET 66 (319)
Q Consensus 7 iD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~----~----------------~~~~~~~~~l~~~ 66 (319)
||+|+|+... ......+..+.+.++........ . ...+.++.+.+.+
T Consensus 1 ID~H~H~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 67 (273)
T PF04909_consen 1 IDAHIHLPGE-------------WDPEERLPEMDKQGVDRQLASPEDLLVDMDVAGVDGADEVQASARGFNDWLVELAAK 67 (273)
T ss_dssp EEEEEEEGGG-------------TCHHHHHHHHHHHTEEEEEEEHEEEEHCHHHGGHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcccCCCC-------------cCchhhhhHHHhcCCchhhcCHHHHHhhHhHhccchHHHHhhHHHHHHHHHHHHHHH
Confidence 8999999211 34556677788888776533210 0 0123444555556
Q ss_pred cC-CeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC
Q 020985 67 DG-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT 145 (319)
Q Consensus 67 ~~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~ 145 (319)
++ ..++.+++.|.... +..+++++.+. ...+.||. +..........+. ......+++|.++
T Consensus 68 ~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~----~~g~~Gv~-l~~~~~~~~~~~~----~~~~~~~~~~~~~ 129 (273)
T PF04909_consen 68 HPDRFIGFAAIPPPDPE---------DAVEELERALQ----ELGFRGVK-LHPDLGGFDPDDP----RLDDPIFEAAEEL 129 (273)
T ss_dssp STTTEEEEEEETTTSHH---------HHHHHHHHHHH----TTTESEEE-EESSETTCCTTSG----HCHHHHHHHHHHH
T ss_pred cCCCEEEEEEecCCCch---------hHHHHHHHhcc----ccceeeeE-ecCCCCccccccH----HHHHHHHHHHHhh
Confidence 65 57788888887743 56778888875 34577774 4444322111111 1125788999999
Q ss_pred CCcEEEEec-----------cchHHHHHHHHhccCCCcceEEEeCCCC---HHHHHHHHHC--CCeEeecccc-------
Q 020985 146 KLPMFLHMR-----------EAAADFCAIVERNKDRFTGGVTHSFTGS---AEDRDKLLTF--NMYIGINGCS------- 202 (319)
Q Consensus 146 ~~Pv~iH~r-----------~a~~~~l~il~~~~~~~~~~i~H~f~g~---~~~~~~~l~~--g~y~s~sg~~------- 202 (319)
|+||.+|+. -....+.+++.+++. .++|+-++++. .+.+.++++. |+|+.+|+..
T Consensus 130 ~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P~--l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~ 207 (273)
T PF04909_consen 130 GLPVLIHTGMTGFPDAPSDPADPEELEELLERFPD--LRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWP 207 (273)
T ss_dssp T-EEEEEESHTHHHHHHHHHHHHHHHTTHHHHSTT--SEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEET
T ss_pred ccceeeeccccchhhhhHHHHHHHHHHHHHHHhcC--CeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCc
Confidence 999999965 112344567878763 57777444444 4445555443 8999998841
Q ss_pred --ccChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcC
Q 020985 203 --LKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKG 280 (319)
Q Consensus 203 --~~~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~ 280 (319)
...+.+.+++...+.||||++||+|+.... .....+. .......
T Consensus 208 ~~~~~~~l~~~~~~~g~drilfGSD~P~~~~~---------------------------------~~~~~~~-~~~~~~~ 253 (273)
T PF04909_consen 208 PSFDRPFLRRAVDEFGPDRILFGSDYPHPDGA---------------------------------SPYEYIW-EAYFLDD 253 (273)
T ss_dssp THHCHHHHHHHHHHHTGGGEEEE--TTSSTHH---------------------------------HHHHHHH-HHHHHHH
T ss_pred ccccHHHHHHHHHHhCCceEEecCCCCCCCcc---------------------------------ccHHHHH-HhhhccC
Confidence 112234578888899999999999983110 1111111 2222222
Q ss_pred CChHHHHHHHHHHHHHHhcCC
Q 020985 281 INDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 281 is~~e~~~~~~~~N~~rlf~~ 301 (319)
++ .++..++.++|+.|+|++
T Consensus 254 l~-~~~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 254 LS-EEEREKILYDNARRLYGL 273 (273)
T ss_dssp SS-HHHHHHHHTHHHHHHHTC
T ss_pred CC-HHHHHHHHhHhHHHHcCc
Confidence 79 999999999999999985
No 17
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.58 E-value=8.2e-14 Score=125.64 Aligned_cols=243 Identities=16% Similarity=0.136 Sum_probs=148.2
Q ss_pred EEeeccCCCCccccccccCC-------c---CCCCCHHHHHHHHHHcCCCEEEEeCCCH------HhHHHHHHHHHhcC-
Q 020985 6 LIDIAVNFTDGMFKGIYHGK-------Q---CHASDIATVLSRAWSSGVDRIIVTGGSL------EESKEALAIAETDG- 68 (319)
Q Consensus 6 iiD~H~Hl~~~~~~~~~~~~-------~---~h~~~~~~vl~~~~~~Gv~~~v~~~~~~------~~~~~~~~l~~~~~- 68 (319)
+||+|+|+....+.+.+... . ....+....++++.+.||..++.++... +.++.+.+.+++.+
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 48999999875432211000 0 0001356678889999999988875432 45677778877775
Q ss_pred -CeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 020985 69 -RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKL 147 (319)
Q Consensus 69 -~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~ 147 (319)
.++.+.|+|+..... . +...+...+++....+ ..+.+++..+-.. ....+.+.|++++++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~i~~~~~-~~~~gi~~~~~~~------~~~~~~~~~~~~~~~a~~~~~ 147 (275)
T cd01292 81 IRVVLGLGIPGVPAAV-D-----EDAEALLLELLRRGLE-LGAVGLKLAGPYT------ATGLSDESLRRVLEEARKLGL 147 (275)
T ss_pred eeeEEeccCCCCcccc-c-----hhHHHHHHHHHHHHHh-cCCeeEeeCCCCC------CCCCCcHHHHHHHHHHHHcCC
Confidence 356667787654321 0 1122233333332111 1234443322211 101356789999999999999
Q ss_pred cEEEEeccchH---HHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccc-cC-------hhhHHHHhcCC
Q 020985 148 PMFLHMREAAA---DFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSL-KT-------AENLDVVRGIP 216 (319)
Q Consensus 148 Pv~iH~r~a~~---~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~-~~-------~~~~~~l~~ip 216 (319)
||.+|+..... .+.++++.........+.|++..+.+.++.+.+.|+++++++... .. ..++++++.
T Consensus 148 ~i~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 225 (275)
T cd01292 148 PVVIHAGELPDPTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGAEALRRLLEL-- 225 (275)
T ss_pred eEEEeeCCcccCccCHHHHHHHHhcCCCEEEECCccCCHHHHHHHHHcCCeEEECCcccccccCCcCCcccHHHHHHC--
Confidence 99999986543 244444433211234567999888999999999999999988632 11 123456555
Q ss_pred CCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcC--CChHHHHHHHHHHH
Q 020985 217 IERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKG--INDIDQLSRTLYHN 294 (319)
Q Consensus 217 ~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~--is~~e~~~~~~~~N 294 (319)
..+++++||+|... .+.++...++.+....+ ++ .+++.+.+..|
T Consensus 226 g~~~~lgTD~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~n 271 (275)
T cd01292 226 GIRVTLGTDGPPHP---------------------------------LGTDLLALLRLLLKVLRLGLS-LEEALRLATIN 271 (275)
T ss_pred CCcEEEecCCCCCC---------------------------------CCCCHHHHHHHHHHHHhcCCC-HHHHHHHHhcc
Confidence 27999999999721 12244455555555443 69 99999999888
Q ss_pred HHH
Q 020985 295 TCR 297 (319)
Q Consensus 295 ~~r 297 (319)
+.+
T Consensus 272 ~a~ 274 (275)
T cd01292 272 PAR 274 (275)
T ss_pred ccC
Confidence 765
No 18
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=99.53 E-value=1.3e-12 Score=119.80 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=121.7
Q ss_pred EEeeccCCCCccccccccC-C--cCCCCCHHHHHHHHHHcCCCEEEEeCCC--HHhHHHHHHHHHhcCCeEEeeecCCCC
Q 020985 6 LIDIAVNFTDGMFKGIYHG-K--QCHASDIATVLSRAWSSGVDRIIVTGGS--LEESKEALAIAETDGRLFCTVGVHPTR 80 (319)
Q Consensus 6 iiD~H~Hl~~~~~~~~~~~-~--~~h~~~~~~vl~~~~~~Gv~~~v~~~~~--~~~~~~~~~l~~~~~~i~~~~GiHP~~ 80 (319)
+||+|+|+....+ ..+.. . .....+++++++.|+.+||++.|++..+ ..+...+++.++.++.++++++++|..
T Consensus 2 ~iD~H~H~~~~~~-~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~~~~r~~g~~~~~p~~ 80 (263)
T cd01311 2 AVDAHMHVFDPGY-PFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALASNGKARGGATVDPRT 80 (263)
T ss_pred CEEeeeeeeCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHhhCCCeEEEEEECCCC
Confidence 6999999987543 11000 0 0012578999999999999999988643 334445566665556677888888865
Q ss_pred cccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc-hHH
Q 020985 81 CKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA-AAD 159 (319)
Q Consensus 81 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a-~~~ 159 (319)
.. .++++++. .+.+.||.- -+... ... ....+.+.++.+.++|+||.+|+... ...
T Consensus 81 ~~-----------~~~l~~~~-----~~g~rGvRl-~~~~~--~~~----~~~~~~~~~~~~~~~gl~v~~~~~~~~l~~ 137 (263)
T cd01311 81 TT-----------DAELKEMH-----DAGVRGVRF-NFLFG--GVD----NKDELDEIAKRAAELGWHVQVYFDAVDLPA 137 (263)
T ss_pred CC-----------HHHHHHHH-----HCCCeEEEE-ecccC--CCC----CHHHHHHHHHHHHHcCCEEEEEeCHhhHHH
Confidence 21 13444442 245667732 22211 111 33557888999999999999999743 456
Q ss_pred HHHHHHhccCCCcceEEEeCCC----------CHHHHHHHHHC-CCeEeecccc-cc-----ChhhH---HHHhcCCCCC
Q 020985 160 FCAIVERNKDRFTGGVTHSFTG----------SAEDRDKLLTF-NMYIGINGCS-LK-----TAENL---DVVRGIPIER 219 (319)
Q Consensus 160 ~l~il~~~~~~~~~~i~H~f~g----------~~~~~~~~l~~-g~y~s~sg~~-~~-----~~~~~---~~l~~ip~dr 219 (319)
+.++++++ . .++|+-+++. .+..+.++++. |+|+-+||.. +. ....+ +.+..++.||
T Consensus 138 l~~l~~~~-~--l~ivldH~G~p~~~~~~~~~~~~~~l~~l~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~g~dR 214 (263)
T cd01311 138 LLPFLQKL-P--VAVVIDHFGRPDVTKGVDGAEFAALLKLIEEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAAAPDR 214 (263)
T ss_pred HHHHHHHC-C--CCEEEECCCCCCCCCCCCCHhHHHHHHHHhcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 77788887 2 4566633331 12333334443 8999999852 11 01122 3222458999
Q ss_pred EEEcCCCCCc
Q 020985 220 MMIETDSPYC 229 (319)
Q Consensus 220 lLlETD~P~~ 229 (319)
||++||+|..
T Consensus 215 lmfGSD~P~~ 224 (263)
T cd01311 215 LVWGTDWPHP 224 (263)
T ss_pred EEEeCCCCCC
Confidence 9999999984
No 19
>PRK09237 dihydroorotase; Provisional
Probab=99.42 E-value=2.7e-11 Score=116.79 Aligned_cols=242 Identities=17% Similarity=0.198 Sum_probs=140.7
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhc-C-C--eEEeeecCCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAETD-G-R--LFCTVGVHPT 79 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~-~-~--i~~~~GiHP~ 79 (319)
-+||+|+|+... ... + .+ ..-+.+...|+..++.++. .+.+.+...+...+. . . .|..++.|-.
T Consensus 54 G~iD~H~H~~~~-~~~-~-------~~--~~~~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~ 122 (380)
T PRK09237 54 GWIDLHVHVYPG-STP-Y-------GD--EPDEVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGL 122 (380)
T ss_pred CEEEeeecCCCC-CCc-c-------CC--CHHHHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccc
Confidence 589999999853 110 0 11 2224567789999887664 344444444443322 1 2 2222232211
Q ss_pred Ccc-cccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchH
Q 020985 80 RCK-EFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAA 158 (319)
Q Consensus 80 ~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~ 158 (319)
... ...+ ..+-..+++.+++.+ ....+++++| ++++........ ..++...++|.++++||.+|+++...
T Consensus 123 ~~~~~~~~--~~~~~~~~~~~~~~~--~~~~v~glk~-~~~~~v~~~~~~----~~~~~~~~~a~~~g~~v~~H~~~~~~ 193 (380)
T PRK09237 123 LAQDELAD--LEDIDADAVAEAVKR--NPDFIVGIKA-RMSSSVVGDNGI----EPLELAKAIAAEANLPLMVHIGNPPP 193 (380)
T ss_pred cccchhcC--HhHCCHHHHHHHHHh--CcCcEEEEEE-EEecccccccCC----chHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 111 1100 001134556666653 1234888876 455431111000 12445556677999999999987654
Q ss_pred HHHHHHHhccCCCcceEEEeCCCCH-----------HHHHHHHHCCCeEeec-cc-cccChhhHHHHhcC-CCCCEEEcC
Q 020985 159 DFCAIVERNKDRFTGGVTHSFTGSA-----------EDRDKLLTFNMYIGIN-GC-SLKTAENLDVVRGI-PIERMMIET 224 (319)
Q Consensus 159 ~~l~il~~~~~~~~~~i~H~f~g~~-----------~~~~~~l~~g~y~s~s-g~-~~~~~~~~~~l~~i-p~drlLlET 224 (319)
...++++-... ..++.|||+|+. +.+++++++|+|++++ |. .+..+..+++++.- ..+ .++|
T Consensus 194 ~~~~l~~~l~~--g~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g~~~~~~~~~~~l~~~g~~~~--~l~t 269 (380)
T PRK09237 194 SLEEILELLRP--GDILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHGTASFSFKVAEAAIAAGILPD--TIST 269 (380)
T ss_pred CHHHHHhhccC--CCEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCCCCcccHHHHHHHHHCCCCce--EEEC
Confidence 44444433322 246899999987 7999999999999986 32 23223344555542 222 6788
Q ss_pred CCCCccccccccccccccccCCCcccccccccccCCCCCccch-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 225 DSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCL-VRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 225 D~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~-l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
|..- .. ..|.|.. +..+++.+++ +|++ .+++.+.++.|..++|++.
T Consensus 270 D~~~---~~---------------------------~~~~~~~~l~~~~~~~~~-~g~~-~~~al~~aT~n~A~~lgl~ 316 (380)
T PRK09237 270 DIYC---RN---------------------------RINGPVYSLATVMSKFLA-LGMP-LEEVIAAVTKNAADALRLP 316 (380)
T ss_pred CCCC---CC---------------------------cccchHhHHHHHHHHHHH-hCCC-HHHHHHHHHHHHHHHcCCC
Confidence 8532 00 1345555 7888887775 6999 9999999999999999984
No 20
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=99.31 E-value=5.5e-11 Score=111.27 Aligned_cols=266 Identities=13% Similarity=0.161 Sum_probs=157.6
Q ss_pred CCcEEeeccCCCCccccccccCCcCCCC----CHHH---HHHHHHHcCCCEEEEeCCC--HHhHHHHHHHHHhcC-CeEE
Q 020985 3 TIRLIDIAVNFTDGMFKGIYHGKQCHAS----DIAT---VLSRAWSSGVDRIIVTGGS--LEESKEALAIAETDG-RLFC 72 (319)
Q Consensus 3 ~m~iiD~H~Hl~~~~~~~~~~~~~~h~~----~~~~---vl~~~~~~Gv~~~v~~~~~--~~~~~~~~~l~~~~~-~i~~ 72 (319)
+|-+..+|=|+... +.+.....-+... +.+. -+++++++|+..+|-++.. -.+...+.+++++.. +|++
T Consensus 5 ~LG~tl~HEHl~~d-~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~ 83 (308)
T PF02126_consen 5 ELGFTLMHEHLLID-LSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIA 83 (308)
T ss_dssp GCSSEEEEEESEEE-TTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEE
T ss_pred HCCCeecccCeeec-ChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEE
Confidence 46677888888652 1111111111112 3332 3678889999888876531 245666777877765 6899
Q ss_pred eeecCCCC--cccccccCCCHHHHHHHHHHHHhccCCC--CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCc
Q 020985 73 TVGVHPTR--CKEFEESGDPEKHFQALLSLAKEGIEKG--KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLP 148 (319)
Q Consensus 73 ~~GiHP~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~--~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~P 148 (319)
+.|+|... ...... ...++..+.+.+-+.+.+... +.-.|||+|-. . .-.+.++++|++....+++.|+|
T Consensus 84 ~TG~y~~~~~p~~~~~-~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~-~----~it~~E~k~lrAaa~A~~~TG~p 157 (308)
T PF02126_consen 84 STGFYKEPFYPEWVRE-ASVEELADLFIREIEEGIDGTGIKAGIIKEIGSS-N----PITPLEEKVLRAAARAHKETGAP 157 (308)
T ss_dssp EEEE-SGGCSCHHHHT-SHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBT-T----BCEHHHHHHHHHHHHHHHHHT-E
T ss_pred eCCCCccccCChhhhc-CCHHHHHHHHHHHHHhcCCCCccchhheeEeecc-C----CCCHHHHHHHHHHHHHHHHhCCe
Confidence 99997532 211111 011223334444455555432 45578887644 2 22468899999999999999999
Q ss_pred EEEEeccc---hHHHHHHHHhccCCCcceEE-EeC-CCCHHHHHHHHHCCCeEeeccc-----c--------ccChh---
Q 020985 149 MFLHMREA---AADFCAIVERNKDRFTGGVT-HSF-TGSAEDRDKLLTFNMYIGINGC-----S--------LKTAE--- 207 (319)
Q Consensus 149 v~iH~r~a---~~~~l~il~~~~~~~~~~i~-H~f-~g~~~~~~~~l~~g~y~s~sg~-----~--------~~~~~--- 207 (319)
|++|+... ..+++++|++.+.++.++++ |.- +.+.+..+++++.|+|++|-.. - +.+.+
T Consensus 158 I~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri 237 (308)
T PF02126_consen 158 ISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERI 237 (308)
T ss_dssp EEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHH
T ss_pred EEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHH
Confidence 99999754 47899999999887668877 754 3457788999999999998654 1 11221
Q ss_pred --hHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHH
Q 020985 208 --NLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDID 285 (319)
Q Consensus 208 --~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e 285 (319)
+.++++.--.||||+.+|.-.... +- ++.+. +.....-+..++-.+-+ +|++ .+
T Consensus 238 ~~l~~L~~~Gy~~qIlLS~D~~~k~~-------------~~-~~gg~--------g~~~~~i~~~fiP~L~~-~Gv~-~~ 293 (308)
T PF02126_consen 238 ELLKELIEEGYADQILLSHDIGRKSR-------------LY-RYGGG--------GYGYIYILTRFIPRLKE-RGVS-EE 293 (308)
T ss_dssp HHHHHHHHTTTGGGEEE-HHHESEEG-------------SS-SCCHH--------HHTTTHHHHTHHHHHHH-TTS--HH
T ss_pred HHHHHHHHcCCcCcEEEecccccccc-------------cc-ccCCC--------CccHHHHHHHHHHHHHH-cCCC-HH
Confidence 235666667899999999866110 10 01110 01111112333444333 6999 99
Q ss_pred HHHHHHHHHHHHhc
Q 020985 286 QLSRTLYHNTCRVF 299 (319)
Q Consensus 286 ~~~~~~~~N~~rlf 299 (319)
++.+++.+|..|+|
T Consensus 294 ~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 294 DIDKILVENPARIL 307 (308)
T ss_dssp HHHHHHTHHHHHHH
T ss_pred HHHHHHHHCHHHHc
Confidence 99999999999998
No 21
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.27 E-value=8e-10 Score=102.99 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=130.3
Q ss_pred HHHHHHcCCCEEEEeC-C---CHHhH------HHHHHHHHhcCC-eEEeeecCCCCcccccccCCCHHHHHHHHHHHHhc
Q 020985 36 LSRAWSSGVDRIIVTG-G---SLEES------KEALAIAETDGR-LFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEG 104 (319)
Q Consensus 36 l~~~~~~Gv~~~v~~~-~---~~~~~------~~~~~l~~~~~~-i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~ 104 (319)
++.++..|++..+..+ . ...+. +.+.+++.++|+ .++++.+-|.... ...+++++.+++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~---------~a~~E~er~v~~- 124 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPE---------AAAEELERRVRE- 124 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchH---------HHHHHHHHHHHh-
Confidence 5677888888776652 1 12222 357777888886 5577777777642 356777877763
Q ss_pred cCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccch------------HHHHHHHHhccCCCc
Q 020985 105 IEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAA------------ADFCAIVERNKDRFT 172 (319)
Q Consensus 105 ~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~------------~~~l~il~~~~~~~~ 172 (319)
..++++..-+..... + ...+.+...++.|.++|+||+||+.... -.+-+++++++. .
T Consensus 125 ---~gf~g~~l~p~~~~~--~----~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~--l 193 (293)
T COG2159 125 ---LGFVGVKLHPVAQGF--Y----PDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPE--L 193 (293)
T ss_pred ---cCceEEEecccccCC--C----CCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCC--C
Confidence 334444322222111 0 1122388999999999999999997521 245678888863 3
Q ss_pred ceEE-EeC-CCC--HHHHHHHH-HCCCeEeecccccc--ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccC
Q 020985 173 GGVT-HSF-TGS--AEDRDKLL-TFNMYIGINGCSLK--TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTW 245 (319)
Q Consensus 173 ~~i~-H~f-~g~--~~~~~~~l-~~g~y~s~sg~~~~--~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l 245 (319)
++|+ |+- +.. .+.+.... ..++|+.+++...+ .+...+.+..++.||||++||+|+..+
T Consensus 194 ~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~~~~~~~~~~~~~dkilFGSD~P~~~~-------------- 259 (293)
T COG2159 194 KIVLGHMGEDYPWELEAIELAYAHPNVYLDTSGVRPKYFAPPLLEFLKELGPDKILFGSDYPAIHP-------------- 259 (293)
T ss_pred cEEEEecCCCCchhHHHHHHHHhCCCceeeeeccccccCChHHHHHHHhcccCeEEecCCCCCcCH--------------
Confidence 5554 763 122 22222222 24999999987421 223445444499999999999998311
Q ss_pred CCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 246 PSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 246 ~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
. .-+..+ ...+++ .+...+++++|+.|+|++.+
T Consensus 260 --------------------~---~~l~~~-~~l~l~-~e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 260 --------------------E---VWLAEL-DELGLS-EEVKEKILGENAARLLGLDP 292 (293)
T ss_pred --------------------H---HHHHHH-HhcCCC-HHHHHHHHHHhHHHHhCcCC
Confidence 0 112222 224788 99999999999999998753
No 22
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=99.11 E-value=8.9e-09 Score=94.26 Aligned_cols=271 Identities=15% Similarity=0.135 Sum_probs=161.6
Q ss_pred CCcEEeeccCCCCcc---ccccccCCcCCCCCHHHHHH---HHHHcCCCEEEEeCCC--HHhHHHHHHHHHhcC-CeEEe
Q 020985 3 TIRLIDIAVNFTDGM---FKGIYHGKQCHASDIATVLS---RAWSSGVDRIIVTGGS--LEESKEALAIAETDG-RLFCT 73 (319)
Q Consensus 3 ~m~iiD~H~Hl~~~~---~~~~~~~~~~h~~~~~~vl~---~~~~~Gv~~~v~~~~~--~~~~~~~~~l~~~~~-~i~~~ 73 (319)
+|-+...|=|+.-.. ..+...+-.|+......++. ++.+.|+..+|-++.. -.+-..+.++++... +|+.+
T Consensus 15 ~lGvTl~HEHl~~~~~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~ 94 (316)
T COG1735 15 DLGVTLMHEHLFIDPYEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAA 94 (316)
T ss_pred HccceeehhhhccchHHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEe
Confidence 356677888876542 11222233444444444433 4445799988876421 245566667776654 68888
Q ss_pred eecC-----CCCcccccccCCCHHHHHHHHHHHHhccCCC--CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 020985 74 VGVH-----PTRCKEFEESGDPEKHFQALLSLAKEGIEKG--KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATK 146 (319)
Q Consensus 74 ~GiH-----P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~--~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~ 146 (319)
.|++ |.+.+... .++.-+.+.+-+++.+... +.-.|||+|--- .. ....+++|++..+.+++.+
T Consensus 95 TGfy~~~~~p~~~~~~~----i~~~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~~---~i--Tp~Eek~lrAaA~A~~~Tg 165 (316)
T COG1735 95 TGFYKAAFHPEYFALRP----IEELAEFVVKEIEEGIAGTGIKAGIIKEAGGSP---AI--TPLEEKSLRAAARAHKETG 165 (316)
T ss_pred ccccccccchhHHhhCC----HHHHHHHHHHHHHhcccCCccccceeeeccCcc---cC--CHHHHHHHHHHHHHhhhcC
Confidence 8885 54433221 1222233334444333221 556788888431 22 2467899999999999999
Q ss_pred CcEEEEeccc--hHHHHHHHHhccCCCcceEE-EeC-CCC-HHHHHHHHHCCCeEeeccc---cccChh-----hHHHHh
Q 020985 147 LPMFLHMREA--AADFCAIVERNKDRFTGGVT-HSF-TGS-AEDRDKLLTFNMYIGINGC---SLKTAE-----NLDVVR 213 (319)
Q Consensus 147 ~Pv~iH~r~a--~~~~l~il~~~~~~~~~~i~-H~f-~g~-~~~~~~~l~~g~y~s~sg~---~~~~~~-----~~~~l~ 213 (319)
.|+++|+... ..+.+++|.+.+.++.++++ |+- +.+ ....+.+.++|.|++|-+. .+.+.+ ..++++
T Consensus 166 ~Pi~tHt~~gt~g~eq~~il~~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~iG~d~y~pd~~r~~~~~~l~~ 245 (316)
T COG1735 166 APISTHTPAGTMGLEQLRILAEEGVDLRKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVA 245 (316)
T ss_pred CCeEEeccchhhhHHHHHHHHHcCCChhHeeEeccCCCCChHHHHHHHHhcCceEEecccCccccCcHHHhhhhHHHHHH
Confidence 9999999743 57888999999876556666 765 433 4445667778999999875 233332 235666
Q ss_pred cCCCCCEEEc-CCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHH
Q 020985 214 GIPIERMMIE-TDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLY 292 (319)
Q Consensus 214 ~ip~drlLlE-TD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~ 292 (319)
+-=.|+|++. .|+-+. .+...+.-+ + ..+.+-+.+|....=--.+-+|++ .+.+.+.+.
T Consensus 246 ~gy~d~i~ls~d~~~~~-------~~~~~~~~~--~----------~~~~~g~~~I~~~fIP~Lk~~Gvd-e~~i~~mlv 305 (316)
T COG1735 246 RGYADLILLSHDDICLS-------DDVFLKSML--K----------ANGGWGYGYILNDFIPRLKRHGVD-EETIDTMLV 305 (316)
T ss_pred hhHhhheecccchhhhh-------hhHHHHhhh--h----------hcCCcccchhhHhhHHHHHHcCCC-HHHHHHHHh
Confidence 6667889998 222220 000000001 1 112344455553322222446999 999999999
Q ss_pred HHHHHhcCCC
Q 020985 293 HNTCRVFFPQ 302 (319)
Q Consensus 293 ~N~~rlf~~~ 302 (319)
+|..|+|.-+
T Consensus 306 dNP~r~f~~~ 315 (316)
T COG1735 306 DNPARLFTAK 315 (316)
T ss_pred hCHHHHhccC
Confidence 9999999643
No 23
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.09 E-value=2.6e-08 Score=90.75 Aligned_cols=244 Identities=13% Similarity=0.059 Sum_probs=149.4
Q ss_pred CCCcEEeeccCCCCcccccc-ccC---CcCCCCCHHHHHHHHHHcCCCEEEEeCC--CHHhHHHHHHHHHhcCCeEEe-e
Q 020985 2 ATIRLIDIAVNFTDGMFKGI-YHG---KQCHASDIATVLSRAWSSGVDRIIVTGG--SLEESKEALAIAETDGRLFCT-V 74 (319)
Q Consensus 2 ~~m~iiD~H~Hl~~~~~~~~-~~~---~~~h~~~~~~vl~~~~~~Gv~~~v~~~~--~~~~~~~~~~l~~~~~~i~~~-~ 74 (319)
..+++||+|.|+-......+ |-. .-..+-..++.++.++..||.+.|.+-+ ++.|.+...+..++.++...+ +
T Consensus 5 ~~~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~D~~~e~~~v~~~~~~~g~~v 84 (279)
T COG3618 5 APQMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPRDNEKELAFVAELAERHGGIV 84 (279)
T ss_pred ccccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCccchHHHHHHHHhhHHhhCceE
Confidence 45799999999987642111 000 0011236789999999999999998754 556887777776665543332 5
Q ss_pred ecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEec
Q 020985 75 GVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 75 GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
|+==.... +..++|++.. ++.++++ -.....- .....+-..|++-++-...+|+++-++.-
T Consensus 85 g~id~~~~---------e~~a~L~~~~-----~~~~~Gv--R~~l~~~---p~~~~~a~~~r~~~~rL~~~gl~fdl~~~ 145 (279)
T COG3618 85 GVIDECRP---------EFAAKLERAR-----YPFFRGV--RRNLHVV---PDGLFEAPAWRANVERLAKLGLHFDLQVD 145 (279)
T ss_pred EEEecCCc---------hHHHHHHHhc-----cccccee--eehhhcC---CccchhhHHHHHHHHHHHhcCCeEEEEeC
Confidence 55322221 3455555432 2333333 1111110 11112227899999999999999999885
Q ss_pred -cchHHHHHHHHhccCCCcceEE-EeCCCC---------HHHHHHHHHC-CCeEeecccc-cc--C--hh-h----HHHH
Q 020985 155 -EAAADFCAIVERNKDRFTGGVT-HSFTGS---------AEDRDKLLTF-NMYIGINGCS-LK--T--AE-N----LDVV 212 (319)
Q Consensus 155 -~a~~~~l~il~~~~~~~~~~i~-H~f~g~---------~~~~~~~l~~-g~y~s~sg~~-~~--~--~~-~----~~~l 212 (319)
.-..+.+..+.+.+. .++|+ ||-.-. .+.+.++.+. |+|+=+||.. +. + .+ + ..++
T Consensus 146 ~~ql~~~i~l~~~~Pd--~~~VldH~G~p~~~~~~~~~w~~~m~~la~~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i 223 (279)
T COG3618 146 PHQLPDLIPLALKAPD--VNFVLDHCGRPDIKINLEDPWKAALARLARRPNVWAKLSGVYAYSDESWTVEDVRPYVEELI 223 (279)
T ss_pred hhhhHHHHHHHhhCCC--CCEEeccCCCCCccccccCHHHHHHHHHHhCCCeEEEEeeecccccCCCCHHHHHHHHHHHH
Confidence 335566666666542 35555 875431 2233444443 8999999853 21 1 11 1 3577
Q ss_pred hcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHh-cCCChHHHHHHHH
Q 020985 213 RGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGC-KGINDIDQLSRTL 291 (319)
Q Consensus 213 ~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~-~~is~~e~~~~~~ 291 (319)
...|.||++++||+|-.+ |. . +....+....++ -+ + .++-.+++
T Consensus 224 ~~fg~dR~vfGSdwPv~~--------------l~---------------~----~~~~~~~~~~~~v~~-~-~~er~~i~ 268 (279)
T COG3618 224 ELFGWDRFVFGSDWPVTS--------------LE---------------S----DFASWVAATRELVPG-D-AAERARIL 268 (279)
T ss_pred HhcCccceEecCCCCccc--------------cc---------------C----ChHHHHHHHHHHcCC-C-HHHHHHHH
Confidence 778999999999999842 21 1 333444444444 34 7 99999999
Q ss_pred HHHHHHhcCC
Q 020985 292 YHNTCRVFFP 301 (319)
Q Consensus 292 ~~N~~rlf~~ 301 (319)
.+|++|+|++
T Consensus 269 ~~NA~rly~~ 278 (279)
T COG3618 269 VDNARRLYRL 278 (279)
T ss_pred hhCHHHHhCC
Confidence 9999999975
No 24
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=99.04 E-value=3.3e-08 Score=95.72 Aligned_cols=253 Identities=15% Similarity=0.118 Sum_probs=143.0
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcC-CeEEeeecC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDG-RLFCTVGVH 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~-~i~~~~GiH 77 (319)
-+||+|+|+....-.+.+ .....+-.+.++-++|+..++-+.. .+++.....+..+.-. ..+...|..
T Consensus 57 GlID~HvH~~~gg~~~~~-----~~~~~e~~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~ 131 (389)
T TIGR01975 57 GFIDQHVHIIGGGGEGGP-----TTRTPELTLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAY 131 (389)
T ss_pred CEeehhhccccccccCCC-----ccCCHHHHHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEcccc
Confidence 589999999763111100 1123444577888999988775531 1221111112111111 233344432
Q ss_pred CCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCC----Cc--EEE
Q 020985 78 PTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATK----LP--MFL 151 (319)
Q Consensus 78 P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~----~P--v~i 151 (319)
-.-...... .....+. ..+++++||||-+--++...... +-|.+..+.|+..+ +| |++
T Consensus 132 ~~p~~t~t~-----~~~~d~~-------~~d~iiG~~~ia~sd~r~~~~~~----~~l~~~~~~~~~~g~~~~~~g~~~v 195 (389)
T TIGR01975 132 HVPSRTITG-----SVESDLL-------LIDKVIGVGEIAISDHRSAQPTV----EHLTNMAAEARVGGLLGGKPGIVNF 195 (389)
T ss_pred cCCCccccc-----chhhhee-------eehhhcccceEEEccCcCCCCCH----HHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 111111211 1122221 13578999999999877443332 33666677777766 99 999
Q ss_pred Eeccc---hHHHHHHHHhccCCCcceEEEeCCCC--------HHHHHHHHHCCCeEeecccc-cc--------Ch-hhHH
Q 020985 152 HMREA---AADFCAIVERNKDRFTGGVTHSFTGS--------AEDRDKLLTFNMYIGINGCS-LK--------TA-ENLD 210 (319)
Q Consensus 152 H~r~a---~~~~l~il~~~~~~~~~~i~H~f~g~--------~~~~~~~l~~g~y~s~sg~~-~~--------~~-~~~~ 210 (319)
|..+. .+++++++++. -+..|||.+. .+.+.+++++|.++.++... +. .. ..+.
T Consensus 196 H~g~~~~~l~~l~~~~~~~-----di~~~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l~~~~~~~~~~~~~ 270 (389)
T TIGR01975 196 HVGDSKRALQPIYELVENT-----DVPITQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFRKEGEVAPAEGIKK 270 (389)
T ss_pred EeCCchhhHHHHHHHHHhc-----CCChhheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccchhccccChHHHHHH
Confidence 99875 45667777653 3467888775 35677788889888887431 11 11 2244
Q ss_pred HHhc-CCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHH
Q 020985 211 VVRG-IPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSR 289 (319)
Q Consensus 211 ~l~~-ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~ 289 (319)
+++. +|++|+.+.||+.-..|.-.. .|.+. ..+......+...++.+.+..+++ .+++.+
T Consensus 271 ~~~~Gv~~~~i~isSD~~gs~p~~~~--------------~g~~~----~~g~g~~~sl~~~~~~lv~~g~ls-~~eal~ 331 (389)
T TIGR01975 271 ALEAGVPLEKVTFSSDGNGSQPFFDE--------------NGELT----GLGVGSFETLFEEVREAVKDGDVP-LEKALR 331 (389)
T ss_pred HHHcCCCcceEEEEeCCCCCCCcccc--------------ccccc----cCCcCcHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 5554 689999999998531110000 00000 001111223455566666655699 999999
Q ss_pred HHHHHHHHhcCCC
Q 020985 290 TLYHNTCRVFFPQ 302 (319)
Q Consensus 290 ~~~~N~~rlf~~~ 302 (319)
.+..|..+++++.
T Consensus 332 ~~T~npA~~Lgl~ 344 (389)
T TIGR01975 332 VITSNVAGVLNLT 344 (389)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999986
No 25
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=98.92 E-value=2e-07 Score=90.07 Aligned_cols=262 Identities=13% Similarity=0.131 Sum_probs=134.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcC-CeEEeeecC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDG-RLFCTVGVH 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~-~i~~~~GiH 77 (319)
-+||+|+|+........+ -..+.+...+++...|+..++.++. +++......+.+.+.. +++.+.|..
T Consensus 57 G~id~H~H~~~~~~~~~~-----~~~t~~~~~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~ 131 (388)
T PRK10657 57 GFIDQHVHIIGGGGEGGF-----STRTPEVQLSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGSY 131 (388)
T ss_pred cceeeeeCcccCCCCccc-----ccCCHHHHHHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecCC
Confidence 589999998731100000 0135556678888899988886651 1222222233222322 344455543
Q ss_pred CCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CC--cEEEEec
Q 020985 78 PTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KL--PMFLHMR 154 (319)
Q Consensus 78 P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~--Pv~iH~r 154 (319)
........+ ...+++ .+ .+++.++||+++-.+... .+.+...+...+..+.++.. ++ |+++|+.
T Consensus 132 ~~~~~~~~~-----~~~~~~-~~------~~~~~g~g~~~~~~~~~~-~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~ 198 (388)
T PRK10657 132 HVPVRTITG-----SIRKDI-VL------IDKVIGVGEIAISDHRSS-QPTVEELARLAAEARVGGLLSGKAGIVHVHMG 198 (388)
T ss_pred CCCchhhhc-----chhhce-eh------hhhhhCcceeeeccCCCC-CCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 211100100 111111 11 224557888877754311 11222223333334444333 22 8999976
Q ss_pred c---chHHHHHHHHhccCCCcceEEEeCCC---CHHHHHHHHHCCCeEeecc-cc-ccC-------hhhHHHHhcC-CCC
Q 020985 155 E---AAADFCAIVERNKDRFTGGVTHSFTG---SAEDRDKLLTFNMYIGING-CS-LKT-------AENLDVVRGI-PIE 218 (319)
Q Consensus 155 ~---a~~~~l~il~~~~~~~~~~i~H~f~g---~~~~~~~~l~~g~y~s~sg-~~-~~~-------~~~~~~l~~i-p~d 218 (319)
. +.+.+.++|++.+......+.|+..- ..+...+++++|.++.+.. .. ++. ..+.++++.- +.|
T Consensus 199 ~~~~~l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~G~~~d 278 (388)
T PRK10657 199 DGKKGLQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDPDFLGEGEVAPAEALKRALEAGVPLS 278 (388)
T ss_pred CchHHHHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHHcCCeEEEecCCCcccccCccCHHHHHHHHHHcCCChh
Confidence 3 23334466666664434445544332 2367788888999986652 21 111 1234667665 589
Q ss_pred CEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 020985 219 RMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRV 298 (319)
Q Consensus 219 rlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rl 298 (319)
|+++.||.+--.+. +. .+|.+- + .+.....++...+.......+++ .+++.+....|..++
T Consensus 279 ~v~l~tD~~~~~~~------------~~--~~g~~~---~-~g~~~~~~l~~~~~~~~~~~gis-~~~~l~~aT~npA~~ 339 (388)
T PRK10657 279 RVTLSSDGNGSLPK------------FD--EDGNLV---G-LGVGSVESLLEEVRELVKDEGLP-LEDALKPLTSNVARF 339 (388)
T ss_pred heEEECCCCCCCce------------ec--cCCCEe---c-cCcCchhhHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 99999996320000 00 000000 0 01111233555555555556999 999999999999999
Q ss_pred cCCCC
Q 020985 299 FFPQD 303 (319)
Q Consensus 299 f~~~~ 303 (319)
|++.+
T Consensus 340 lg~~~ 344 (388)
T PRK10657 340 LKLNG 344 (388)
T ss_pred hCCCC
Confidence 99865
No 26
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=98.79 E-value=4e-06 Score=80.96 Aligned_cols=246 Identities=13% Similarity=0.110 Sum_probs=133.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC----HHhHHHHHHHHHhcC-CeEEeeecCCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS----LEESKEALAIAETDG-RLFCTVGVHPT 79 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~----~~~~~~~~~l~~~~~-~i~~~~GiHP~ 79 (319)
-+||+|+|+....+.. ..+.+ ..+...|+..++.+++. .+.+...+..+++.+ +.+..++.+.-
T Consensus 57 GliD~H~H~~~~g~~~--------~~~~~---~~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~~~ 125 (379)
T PRK12394 57 GLIDYHAHVFYDGTEG--------GVRPD---MYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPPGQ 125 (379)
T ss_pred CEEEeeecCCCCCccc--------ccCHH---HHHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecccc
Confidence 5899999996532210 01222 23567899999888643 222333222233332 34444455421
Q ss_pred CcccccccCCCH-HHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchH
Q 020985 80 RCKEFEESGDPE-KHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAA 158 (319)
Q Consensus 80 ~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~ 158 (319)
......+..... ..+++..++++.+ ++.+.+++ +.+.. .... ....+.|+.++++|+++++|+.+|+.++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~k---i~~~~-~~~~-~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~ 198 (379)
T PRK12394 126 TWSGYQENYDPDNIDENKIHALFRQY--RNVLQGLK---LRVQT-EDIA-EYGLKPLTETLRIANDLRCPVAVHSTHPVL 198 (379)
T ss_pred cccCcccccChhHCCHHHHHHHHHHC--cCcEEEEE---EEEec-cccc-ccchHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 110000000000 0134555555431 23344332 22211 0000 122567999999999999999999987655
Q ss_pred HHHHHHHhccCCCcceEEEeCCCC-----------HHHHHHHHHCCCeEeeccccc-cC-hhhHHHHhcCCCCCEEEcCC
Q 020985 159 DFCAIVERNKDRFTGGVTHSFTGS-----------AEDRDKLLTFNMYIGINGCSL-KT-AENLDVVRGIPIERMMIETD 225 (319)
Q Consensus 159 ~~l~il~~~~~~~~~~i~H~f~g~-----------~~~~~~~l~~g~y~s~sg~~~-~~-~~~~~~l~~ip~drlLlETD 225 (319)
+..++++-... ...+.||+.+. .+.++++.+.|+++.+.-..- .+ +...++++.- .-...+.||
T Consensus 199 ~~~~~~~~l~~--g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~s~~~~~~~~~~l~~G-~~~~~lgTD 275 (379)
T PRK12394 199 PMKELVSLLRR--GDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAANGRSHFDMNVARRAIANG-FLPDIISSD 275 (379)
T ss_pred cHHHHHHhcCC--CCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEecCCccccchHHHHHHHHCC-CCceEEECC
Confidence 55544443322 23578998743 557788888999875432211 11 2234566551 112488999
Q ss_pred CCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 226 SPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 226 ~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.+-.. . . .+....+..++.++.+ .+++ .+++.+....|..++|++.
T Consensus 276 ~~~~~--~-----------~----------------~~~~~~l~~~~~~~~~-~~~~-~~~~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 276 LSTIT--K-----------L----------------AWPVYSLPWVLSKYLA-LGMA-LEDVINACTHTPAVLMGMA 321 (379)
T ss_pred CCCCC--c-----------c----------------cCccchHHHHHHHHHH-cCCC-HHHHHHHHHHHHHHHhCCC
Confidence 97510 0 0 1111345555555443 5899 9999999999999999985
No 27
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=98.78 E-value=6.4e-07 Score=85.05 Aligned_cols=242 Identities=15% Similarity=0.129 Sum_probs=130.8
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHh-HHHHHHHHHhc-C-CeEEeee
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEE-SKEALAIAETD-G-RLFCTVG 75 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~-~~~~~~l~~~~-~-~i~~~~G 75 (319)
-+||.|+|+..+ .++....+.|.+.| ..++.+.. +.+. ..+..++++++ + .+.+.+|
T Consensus 5 g~iD~h~h~~~~-------------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (335)
T cd01294 5 RPDDMHLHLRDG-------------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMT 70 (335)
T ss_pred CcceeEecCCCc-------------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 579999999863 35667788899999 99988753 2232 23344555555 3 5667788
Q ss_pred cCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHH-HHHHHHHHHHHHHcCCCcEEEEec
Q 020985 76 VHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEI-QRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 76 iHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~-Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
+||.... ..++++++++. ..+.++ .+-..+.... ..... ....+.+.++.|+++|+||++|+.
T Consensus 71 i~~~~~~----------~~~el~~~~~~----~G~~g~-Klf~~~~~~~-~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE 134 (335)
T cd01294 71 LYLTENT----------TPEELREAKKK----GGIRGV-KLYPAGATTN-SQGGVTDLEKIYPVLEAMQKLGMPLLVHGE 134 (335)
T ss_pred EeccCCC----------CHHHHHHHHHh----CCceEE-EEecCCCccC-CCCCcCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 8875321 13455555431 123333 2211100000 00000 125688889999999999999997
Q ss_pred cch-------------HHHHHHHHhccCCCcce-EEEeCCCCHHHHHHHHHC--CCeEeec----------------ccc
Q 020985 155 EAA-------------ADFCAIVERNKDRFTGG-VTHSFTGSAEDRDKLLTF--NMYIGIN----------------GCS 202 (319)
Q Consensus 155 ~a~-------------~~~l~il~~~~~~~~~~-i~H~f~g~~~~~~~~l~~--g~y~s~s----------------g~~ 202 (319)
+.. ..+.++.++++. .++ +.|.- +.+.+..+.+. +++..++ |..
T Consensus 135 ~~~l~~~~~~~e~~~~~~~~~lA~~~p~--~~v~i~Hvs--t~~~~~~i~~ak~~vt~Et~ph~L~l~~~~~~~~~~g~~ 210 (335)
T cd01294 135 VPDFKIDVLDREAKFIPVLEPLAQRFPK--LKIVLEHIT--TADAVEYVKSCNENVAATITPHHLLLTRDDLLGGGLNPH 210 (335)
T ss_pred CCcccccchhhHHHHHHHHHHHHHHcCC--CeEEEeccc--HHHHHHHHHhCCCCcEEEEchhHheeeHHHhcCCCCCCC
Confidence 642 245556655532 244 44763 44445444332 4544322 110
Q ss_pred ------ccChhhHH-HHhcC--CCCCEEEcCCC-CCccccccccccccccccCCCcccccccccccCCC-CCccchHHHH
Q 020985 203 ------LKTAENLD-VVRGI--PIERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKG-RNEPCLVRQV 271 (319)
Q Consensus 203 ------~~~~~~~~-~l~~i--p~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~-~n~P~~l~~v 271 (319)
+++++.++ +.+.+ +.-.+++.||- |+.. ..|..+ ....| ...+..++.+
T Consensus 211 ~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~-------------------~~K~~~-~g~~Gi~~~~~~l~~~ 270 (335)
T cd01294 211 LYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPK-------------------SNKESS-CGCAGIFSAPIALPYL 270 (335)
T ss_pred eEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCC-------------------ccccCC-CCCccccCHHHHHHHH
Confidence 23333332 33433 22334789994 6521 001000 00001 2222244444
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 272 LEVVAGCKGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 272 ~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
++ +.+ ++++ .+.+.+.+..|..|+||+.+
T Consensus 271 ~~-~~~-~~l~-l~~~v~~~s~nPA~i~gl~~ 299 (335)
T cd01294 271 AE-VFE-EHNA-LDKLEAFASDNGPNFYGLPP 299 (335)
T ss_pred HH-HHh-ccCC-HHHHHHHHHhHHHHHhCCCC
Confidence 43 333 4899 99999999999999999854
No 28
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.67 E-value=5.7e-06 Score=78.32 Aligned_cols=253 Identities=13% Similarity=0.075 Sum_probs=133.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCC-----CHHHHHHHHHHcCCCEEEEeCCCHHhH-HHHHHHHH-hcCCeEE-----
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHAS-----DIATVLSRAWSSGVDRIIVTGGSLEES-KEALAIAE-TDGRLFC----- 72 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~-----~~~~vl~~~~~~Gv~~~v~~~~~~~~~-~~~~~l~~-~~~~i~~----- 72 (319)
-+||+|+|+........ .. ..... ....-++++...||..+..++...... +..++-.. .-|+++.
T Consensus 14 GliD~H~Hl~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~~~~~~~~~g~~~gPr~~~~G~~~ 91 (342)
T cd01299 14 GLIDAHTHLGSDPGDLP-LD-LALPVEYRTIRATRQARAALRAGFTTVRDAGGADYGLLRDAIDAGLIPGPRVFASGRAL 91 (342)
T ss_pred CeeeeeeeccccCCCcc-cc-ccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchHHHHHHHHcCCccCCceeecchhh
Confidence 58999999965321100 00 00000 011346677888999988887543332 11111111 1244432
Q ss_pred -eeecCCCCccc---------ccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHH
Q 020985 73 -TVGVHPTRCKE---------FEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELA 142 (319)
Q Consensus 73 -~~GiHP~~~~~---------~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA 142 (319)
..|-|+.+... ......+++..+.+.++++.....=|+..-|..+-...... ......+.|++.++.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~--~~~~~~e~l~~~~~~A 169 (342)
T cd01299 92 SQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPP--DTQFSEEELRAIVDEA 169 (342)
T ss_pred cccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCc--ccCcCHHHHHHHHHHH
Confidence 22334432100 00001233455667777664221113333332221111100 0012246688899999
Q ss_pred HcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccccc-----------C------
Q 020985 143 YATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLK-----------T------ 205 (319)
Q Consensus 143 ~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~-----------~------ 205 (319)
++.++||.+|+... ..+-..+ +.+. ..+.|++.-+.+.++++.+.|++++.+..... .
T Consensus 170 ~~~g~~v~~H~~~~-~~i~~~l-~~G~---~~i~H~~~~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T cd01299 170 HKAGLYVAAHAYGA-EAIRRAI-RAGV---DTIEHGFLIDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEK 244 (342)
T ss_pred HHcCCEEEEEeCCH-HHHHHHH-HcCC---CEEeecCCCCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHH
Confidence 99999999999753 2222233 3332 45889999999999999999999876654210 0
Q ss_pred -----hh----hHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHH
Q 020985 206 -----AE----NLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVA 276 (319)
Q Consensus 206 -----~~----~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA 276 (319)
.. .+++.+. + =++.+.||+|.. .+ ..+ .+..-++.+.
T Consensus 245 ~~~~~~~~~~~~~~l~~~-G-v~v~~GTD~~~~--~~-----------------------------~~~-~~~~e~~~~~ 290 (342)
T cd01299 245 VALVLEAGRDALRRAHKA-G-VKIAFGTDAGFP--VP-----------------------------PHG-WNARELELLV 290 (342)
T ss_pred HHHHHHHHHHHHHHHHHc-C-CeEEEecCCCCC--CC-----------------------------chh-HHHHHHHHHH
Confidence 00 1122222 2 369999999840 00 001 1122233333
Q ss_pred HhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 277 GCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 277 ~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
+ .+++ .+++.+..+.|..+++++.
T Consensus 291 ~-~~~~-~~~al~~~T~~~a~~~g~~ 314 (342)
T cd01299 291 K-AGGT-PAEALRAATANAAELLGLS 314 (342)
T ss_pred H-hCCC-HHHHHHHHHHHHHHHhCcc
Confidence 3 4789 9999999999999999875
No 29
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=98.67 E-value=2.8e-05 Score=75.51 Aligned_cols=217 Identities=14% Similarity=0.072 Sum_probs=123.6
Q ss_pred HHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcC-CeEEeeec----CCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 36 LSRAWSSGVDRIIVTGG-SLEESKEALAIAETDG-RLFCTVGV----HPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 36 l~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~-~i~~~~Gi----HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
+.++-+.|+..+...+. .+..+..+.+.+++.+ +++.+.+. .|..... ...+.++..++++++....+.
T Consensus 96 ~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~g~ 170 (401)
T TIGR02967 96 LDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRD-----TAESSYDESKALIERWHGKGR 170 (401)
T ss_pred HHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCccccc-----CHHHHHHHHHHHHHHHhCcCC
Confidence 35678889998876643 3444555555555543 44332221 2321111 112344555566554222222
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEeccchHHH-------------HHHHHhccCCCcce-
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFLHMREAAADF-------------CAIVERNKDRFTGG- 174 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~iH~r~a~~~~-------------l~il~~~~~~~~~~- 174 (319)
+.+ |+..+..... -.+.+++.+++|+++ ++|+.+|+.....+. ++.+.+.+...++.
T Consensus 171 -i~~---~~~~~~~~~~----s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~ 242 (401)
T TIGR02967 171 -LLY---AVTPRFAPTS----SPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSV 242 (401)
T ss_pred -ceE---EEECCcCCcC----cHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeE
Confidence 222 2221111111 135688999999999 999999997544333 33444444322343
Q ss_pred EEEeCCCCHHHHHHHHHCCCeEeecccc-c--c--ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcc
Q 020985 175 VTHSFTGSAEDRDKLLTFNMYIGINGCS-L--K--TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKK 249 (319)
Q Consensus 175 i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~--~--~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~ 249 (319)
+.||..-+.+.++.+.+.|.+++..+.. + . ....+++++. +. ++.+.||++...
T Consensus 243 ~~H~~~~~~~~~~~l~~~g~~v~~~P~~~~~~~~g~~~~~~~~~~-Gv-~v~lGtD~~~~~------------------- 301 (401)
T TIGR02967 243 FAHCIHLSDEECQRLAETGAAIAHCPTSNLFLGSGLFNLKKALEH-GV-RVGLGTDVGGGT------------------- 301 (401)
T ss_pred EEecccCCHHHHHHHHHcCCeEEEChHHHHHhccCCCCHHHHHHC-CC-eEEEecCCCCCC-------------------
Confidence 5799999999999999999998887642 1 1 1223455554 33 799999986410
Q ss_pred cccccccccCCCCCccchHHHHHHH---HHHh--cCCChHHHHHHHHHHHHHHhcCCC
Q 020985 250 KEKYDQDSLVKGRNEPCLVRQVLEV---VAGC--KGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 250 ~~k~~~~~~~~~~n~P~~l~~v~~~---iA~~--~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
+..+...++. ++.. .+++ .+++.+..+.|..+.+++.
T Consensus 302 ---------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~aT~~~A~~lg~~ 343 (401)
T TIGR02967 302 ---------------SFSMLQTLREAYKVSQLQGARLS-PFEAFYLATLGGARALDLD 343 (401)
T ss_pred ---------------CcCHHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHHHHhCCc
Confidence 0012222222 2222 3588 9999999999999999875
No 30
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=98.60 E-value=5.5e-06 Score=75.92 Aligned_cols=234 Identities=18% Similarity=0.238 Sum_probs=132.8
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC----CHHhHHHHHHHHHhcCCeEEeeecCCCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG----SLEESKEALAIAETDGRLFCTVGVHPTR 80 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~----~~~~~~~~~~l~~~~~~i~~~~GiHP~~ 80 (319)
-+||.|+|.+...-.+ + .+.+.+ +...||..+|-.|+ +...|.+.+--+.+ -++++++-+-|--
T Consensus 58 G~iDlHvHvy~ggt~~-------~-v~pd~~---ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr-~RI~Aflnvs~~G 125 (386)
T COG3964 58 GLIDLHVHVYYGGTEG-------G-VRPDMY---GAPNGVTTVVDAGSAGAANFDGFYRTVIEASR-VRIKAFLNVSPPG 125 (386)
T ss_pred CeeeeeeEEecCCCcc-------C-cCHHHc---cccCCceEEEecCCcCccchhhHHHHhhcchh-heeeeeeeccCcc
Confidence 6899999998753211 0 133332 35679988877764 34444443221111 2355555554432
Q ss_pred cccccccCCC-HHHHHHHHHHHHhccCCCCEE---------EEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEE
Q 020985 81 CKEFEESGDP-EKHFQALLSLAKEGIEKGKVV---------AIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMF 150 (319)
Q Consensus 81 ~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~---------aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~ 150 (319)
.--.++-.++ .-..+++.+..++ +.+-++ .+||-|+. =++..+++|+.+++|++
T Consensus 126 l~a~nE~~d~~nid~d~i~aa~re--h~d~ivGlKvR~s~~~~g~~Git--------------Pl~la~~ia~~~klPlm 189 (386)
T COG3964 126 LTASNELYDPDNIDEDKIHAAFRE--HRDVIVGLKVRVSTEDIGEYGIT--------------PLTLALRIANDLKLPLM 189 (386)
T ss_pred eeeehhhCChhhCCHHHHHHHHHh--CcCcEEEEEEEeeeccccccCCc--------------hHHHHHHHHhhcCCceE
Confidence 2111110001 0122344444443 112222 34444433 15667899999999999
Q ss_pred EEeccc---hHHHHHHHHhccCCCcceEEEeCCCC-----------HHHHHHHHHCCCeEeeccc--cccChhhHHHHhc
Q 020985 151 LHMREA---AADFCAIVERNKDRFTGGVTHSFTGS-----------AEDRDKLLTFNMYIGINGC--SLKTAENLDVVRG 214 (319)
Q Consensus 151 iH~r~a---~~~~l~il~~~~~~~~~~i~H~f~g~-----------~~~~~~~l~~g~y~s~sg~--~~~~~~~~~~l~~ 214 (319)
+|..+. .++++++|+. --+|-|||+|. ...++++.++|+-|.++-. .|.-+-.+.++..
T Consensus 190 vHigePp~~~dEvlerL~~-----GDIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~asfsf~vAr~aia~ 264 (386)
T COG3964 190 VHIGEPPVLMDEVLERLRR-----GDIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRASFSFNVARRAIAN 264 (386)
T ss_pred EecCCCCccHHHHHHhccC-----CceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCcceeeHHHHHHHHhc
Confidence 999874 4677777743 14577999985 3456888889999988633 2332333444442
Q ss_pred CCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccc-hHHHHHHHHHHhcCCChHHHHHHHHHH
Q 020985 215 IPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPC-LVRQVLEVVAGCKGINDIDQLSRTLYH 293 (319)
Q Consensus 215 ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~-~l~~v~~~iA~~~~is~~e~~~~~~~~ 293 (319)
++=--.+.||-.--. .-|-|. .+..+..++-. .|++ ..++.+.++.
T Consensus 265 -GllP~~ISSDlh~~~------------------------------~~n~Pv~dla~~mSKlla-lgmp-l~~Vi~avT~ 311 (386)
T COG3964 265 -GLLPDIISSDLHTIT------------------------------KLNGPVYDLAWIMSKLLA-LGMP-LTDVINAVTH 311 (386)
T ss_pred -CCCcceeeccceeee------------------------------ecCchHHHHHHHHHHHHH-cCCc-HHHHHHHHhc
Confidence 111146777765310 023333 35555555433 3999 9999999999
Q ss_pred HHHHhcCCCCC
Q 020985 294 NTCRVFFPQDL 304 (319)
Q Consensus 294 N~~rlf~~~~~ 304 (319)
|..++.++..+
T Consensus 312 npA~~i~l~~~ 322 (386)
T COG3964 312 NPAVLIGLAEI 322 (386)
T ss_pred CHHHHhCcccc
Confidence 99999887644
No 31
>PRK09228 guanine deaminase; Provisional
Probab=98.59 E-value=4.8e-05 Score=74.87 Aligned_cols=217 Identities=14% Similarity=0.077 Sum_probs=124.7
Q ss_pred HHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcC-CeEEeeecC----CCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 36 LSRAWSSGVDRIIVTGG-SLEESKEALAIAETDG-RLFCTVGVH----PTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 36 l~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~-~i~~~~GiH----P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
+.++-+.|+..++..++ .+..++.+.+.+++.+ +++.+.|+. |..... ..++.+++.+++++++.....
T Consensus 121 ~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~ 195 (433)
T PRK09228 121 LDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRD-----TAESGYDDSKALIERWHGKGR 195 (433)
T ss_pred HHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEeeeeeecCCCCccccc-----CHHHHHHHHHHHHHHHhCCCC
Confidence 34567789988776543 3555666666555543 344444443 221111 112344455555554222221
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEeccchHHHH-------------HHHHhccCCCcce-
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFLHMREAAADFC-------------AIVERNKDRFTGG- 174 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~iH~r~a~~~~l-------------~il~~~~~~~~~~- 174 (319)
+.+| ++.... ...+ .+.++...++|+++ ++|+.+|.-....+.- +.+.+.+...++.
T Consensus 196 -~~~~-~~p~~~--~t~s----~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~G~l~~~~~ 267 (433)
T PRK09228 196 -LLYA-ITPRFA--PTST----PEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERYGLLGPRAV 267 (433)
T ss_pred -ceEE-EECCcC--CcCC----HHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHcCCCCCCeE
Confidence 1221 111111 1122 35788999999998 9999999987654443 3344443222344
Q ss_pred EEEeCCCCHHHHHHHHHCCCeEeecccc-c--c--ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcc
Q 020985 175 VTHSFTGSAEDRDKLLTFNMYIGINGCS-L--K--TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKK 249 (319)
Q Consensus 175 i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~--~--~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~ 249 (319)
+.||..-+.+.++.+.+.|..+++.+.. + . .....++++. --++.++||++...
T Consensus 268 ~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~g~~~~~~~~~~--Gv~v~lGtD~~~~~------------------- 326 (433)
T PRK09228 268 FAHCIHLEDRERRRLAETGAAIAFCPTSNLFLGSGLFDLKRADAA--GVRVGLGTDVGGGT------------------- 326 (433)
T ss_pred EEeccCCCHHHHHHHHHcCCeEEECCccHHhhcCCCcCHHHHHHC--CCeEEEecCCCCCC-------------------
Confidence 5699999999999999999999887652 1 1 1223455554 25789999986410
Q ss_pred cccccccccCCCCCccchHHHHHHHH---HHh--cCCChHHHHHHHHHHHHHHhcCCC
Q 020985 250 KEKYDQDSLVKGRNEPCLVRQVLEVV---AGC--KGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 250 ~~k~~~~~~~~~~n~P~~l~~v~~~i---A~~--~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
+.++...++.. .+. .+++ .+++.+..+.|..+++++.
T Consensus 327 ---------------~~d~~~~~~~~~~~~~~~~~~~~-~~~~l~~aT~~~A~~lg~~ 368 (433)
T PRK09228 327 ---------------SFSMLQTMNEAYKVQQLQGYRLS-PFQAFYLATLGGARALGLD 368 (433)
T ss_pred ---------------CCCHHHHHHHHHHHhhcccCCCC-HHHHHHHHhHHHHHHhCCC
Confidence 11222222222 222 3578 9999999999999999875
No 32
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=98.59 E-value=8.1e-06 Score=82.51 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=142.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC------CCHHhHHHHHHHHHhcC-CeEEeeecC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG------GSLEESKEALAIAETDG-RLFCTVGVH 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~------~~~~~~~~~~~l~~~~~-~i~~~~GiH 77 (319)
-+||+|+|+..... ..+++.+.+-..|+..++... ...+..+..++.+++.| +++.++..-
T Consensus 51 G~ID~H~Hi~~~~~------------~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~ 118 (552)
T TIGR01178 51 GFIDAHIHIESSML------------TPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSC 118 (552)
T ss_pred CeEecccccCCCCC------------ChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 58999999986432 234455566677887776532 24555666666665554 343333211
Q ss_pred -CCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc
Q 020985 78 -PTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA 156 (319)
Q Consensus 78 -P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a 156 (319)
|.-.-+.+. ..=..+++.++++ ++.++++||. ++|.... ....++++.. +.|++.+++|..|+...
T Consensus 119 vp~~~~e~~g---~~~~~~~i~~~~~----~~~V~glke~-m~~~~v~----~~d~~~l~~i-~~a~~~g~~I~gHap~l 185 (552)
T TIGR01178 119 VPALQFETSG---AVLTAEDIDELME----LDEVLGLAEV-MDYPGVI----NADIEMLNKI-NSARKRNKVIDGHCPGL 185 (552)
T ss_pred CCCCcccCCC---CccCHHHHHHHHc----CCCccEEEEE-ecchhhc----CCCHHHHHHH-HHHHhCCCEEEecCCCC
Confidence 211000000 0002456666664 4689999997 3442111 1123444444 78999999999999977
Q ss_pred hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc-ccChh-hHHHHhcCCCCCEEEcCCC--CCcccc
Q 020985 157 AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS-LKTAE-NLDVVRGIPIERMMIETDS--PYCEIK 232 (319)
Q Consensus 157 ~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~~~~~-~~~~l~~ip~drlLlETD~--P~~~~~ 232 (319)
..+-+..+...+. ..-|+ .-+.+++.+-+.+|.|+.+-... .++-. ...+++.-...++.+-||. |+.
T Consensus 186 ~~~eL~~~~~aGi----~~dHe-~~s~~ea~e~~~~Gm~~~ir~gs~~~n~~~~~~~~~~~~~~~~~l~TD~~~~~~--- 257 (552)
T TIGR01178 186 SGKLLNKYISAGI----SNDHE-STSIEEAREKLRLGMKLMIREGSAAKNLEALHPLINEKNCRSLMLCTDDRHVND--- 257 (552)
T ss_pred CHHHHHHHHHcCC----CCCcC-cCCHHHHHHHHHCCCEEEEeCCccccCHHHHHHHHhhcCCceEEEEeCCCChhH---
Confidence 6666665544432 24564 34788999999999999876542 22222 2344444456889999993 320
Q ss_pred ccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 233 NAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
+ ... .++...++.+.+ .|++ .+++.+....|..+.|++..
T Consensus 258 ------------~--~~~---------------g~l~~~v~~ai~-~g~~-~~~Al~maT~npA~~lgl~~ 297 (552)
T TIGR01178 258 ------------I--LNE---------------GHINHIVRRAIE-HGVD-PFDALQMASINPAEHFGIDV 297 (552)
T ss_pred ------------H--Hhc---------------CCHHHHHHHHHH-cCCC-HHHHHHHHHHHHHHHcCCCC
Confidence 0 001 245566665555 4899 99999999999999999864
No 33
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=98.57 E-value=4.8e-05 Score=73.48 Aligned_cols=253 Identities=17% Similarity=0.222 Sum_probs=125.3
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcC-CeEEeeecC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDG-RLFCTVGVH 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~-~i~~~~GiH 77 (319)
-+||+|+|+........ .. ..+.+.-+.++...|+..++-++. +++......+.+++.. ..+.+.|..
T Consensus 55 G~id~H~H~~~~~~~~~----~~-~~~~~~~~~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~ 129 (387)
T cd01308 55 GFIDQHVHIIGGGGEGG----PS-TRTPEVTLSDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSY 129 (387)
T ss_pred CeeehhhCcccccCCCc----cc-ccCHHHHHHHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 58999999965211000 00 012233456778889988876541 1222222222222222 234455543
Q ss_pred CCCcccccccCCCHHHHH-HHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHc----CCCc--EE
Q 020985 78 PTRCKEFEESGDPEKHFQ-ALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYA----TKLP--MF 150 (319)
Q Consensus 78 P~~~~~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~----~~~P--v~ 150 (319)
+...... .+.+. ++ ..+. +..++|+++...+......... +.+.+..|+. .+.| +.
T Consensus 130 ~~~~~~~------~~~~~~~~-~~i~------~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~ 192 (387)
T cd01308 130 EVPTRTI------TGSIRKDL-LLID------KVIGVGEIAISDHRSSQPTVEE----LARIAAEARVGGLLGGKAGIVH 192 (387)
T ss_pred CCCCcCc------hhhHHHHH-HHHH------HhcCcceEEEcCCCCCCCCHHH----HHHHHHHHHHHHHhcCCCcEEE
Confidence 3211111 12222 22 2233 1346778885543211122222 2222333332 3445 56
Q ss_pred EEec---cchHHHHHHHHhccCCCcceEEEeCC-CCHH---HHHHHHHCCCeEeecccc---cc------Chh-hHHHHh
Q 020985 151 LHMR---EAAADFCAIVERNKDRFTGGVTHSFT-GSAE---DRDKLLTFNMYIGINGCS---LK------TAE-NLDVVR 213 (319)
Q Consensus 151 iH~r---~a~~~~l~il~~~~~~~~~~i~H~f~-g~~~---~~~~~l~~g~y~s~sg~~---~~------~~~-~~~~l~ 213 (319)
+|+. .+.+.+.+++++.+.+... ++|++. -+.+ ...+.+++|.|+++.... ++ ... ++.+++
T Consensus 193 vh~~~~~~~~~~i~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (387)
T cd01308 193 IHLGDGKRALSPIFELIEETEIPITQ-FLPTHINRTAPLFEQGVEFAKMGGTIDLTSSIDPQFRKEGEVRPSEALKRLLE 271 (387)
T ss_pred EEeCCchHHHHHHHHHHHhcCCCcce-eECCcccCCHHHHHHHHHHHHcCCcEEEECCCCccccccCccChHHHHHHHHH
Confidence 6676 4567777888776543223 344333 3444 256777889988876431 11 112 245666
Q ss_pred c-CCCCCEEEcCCC----CCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHH
Q 020985 214 G-IPIERMMIETDS----PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLS 288 (319)
Q Consensus 214 ~-ip~drlLlETD~----P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~ 288 (319)
. ++.||+++.||+ |+.. ..|.+. + .+...-..+...+..+.+..+++ .+++.
T Consensus 272 ~g~~~d~i~l~TD~~~~~p~~~------------------~~g~~~---~-~g~~~~~~~~~~~~~~v~~~~i~-~~~al 328 (387)
T cd01308 272 QGVPLERITFSSDGNGSLPKFD------------------ENGNLV---G-LGVGSVDTLLREVREAVKCGDIP-LEVAL 328 (387)
T ss_pred hCCCCCcEEEEECCCCCcccCc------------------cCCeEE---e-cCcCcHHHHHHHHHHHHHhCCCC-HHHHH
Confidence 5 467999999997 2210 000000 0 00000012223333333444699 99999
Q ss_pred HHHHHHHHHhcCCCC
Q 020985 289 RTLYHNTCRVFFPQD 303 (319)
Q Consensus 289 ~~~~~N~~rlf~~~~ 303 (319)
+.+..|..++|++.+
T Consensus 329 ~~~T~npA~~lg~~~ 343 (387)
T cd01308 329 RVITSNVARILKLRK 343 (387)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999864
No 34
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.57 E-value=2.4e-05 Score=75.65 Aligned_cols=138 Identities=13% Similarity=0.051 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEeccchHHH-----------------------------HHHHHhccCCCc-ceEEEe
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHMREAAADF-----------------------------CAIVERNKDRFT-GGVTHS 178 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~-----------------------------l~il~~~~~~~~-~~i~H~ 178 (319)
..+.+.|+...++|+++++|+.+|......+. ++.|.+.+.-.+ ..+.||
T Consensus 159 ~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H~ 238 (381)
T cd01312 159 SVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHC 238 (381)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEEC
Confidence 35678899999999999999999998654443 244554443223 346799
Q ss_pred CCCCHHHHHHHHHCCCeEeecccc-c--c--ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccc
Q 020985 179 FTGSAEDRDKLLTFNMYIGINGCS-L--K--TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKY 253 (319)
Q Consensus 179 f~g~~~~~~~~l~~g~y~s~sg~~-~--~--~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~ 253 (319)
..-+.+.++.+.+.|+.++..+.. . . ....+++++. -=++-+.||++..
T Consensus 239 ~~l~~~~~~~l~~~g~~v~~~P~sn~~lg~g~~p~~~~~~~--Gv~v~lGtD~~~~------------------------ 292 (381)
T cd01312 239 VYANLEEAEILASRGASIALCPRSNRLLNGGKLDVSELKKA--GIPVSLGTDGLSS------------------------ 292 (381)
T ss_pred CcCCHHHHHHHHHcCCeEEECcchhhhhcCCCcCHHHHHHC--CCcEEEeCCCCcc------------------------
Confidence 999999999999999999988752 1 1 1123456655 3478999998641
Q ss_pred cccccCCCCCccchHHHHHHHHHHh---c--CCChHHHHHHHHHHHHHHhcCCC
Q 020985 254 DQDSLVKGRNEPCLVRQVLEVVAGC---K--GINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 254 ~~~~~~~~~n~P~~l~~v~~~iA~~---~--~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
|...++...++..+.+ . .++ .+++-+..+.|..+.+++.
T Consensus 293 ---------~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~l~~aT~~gA~alg~~ 336 (381)
T cd01312 293 ---------NISLSLLDELRALLDLHPEEDLLEL-ASELLLMATLGGARALGLN 336 (381)
T ss_pred ---------CCCCCHHHHHHHHHHhcccccccCC-HHHHHHHHHHHHHHHhCCC
Confidence 0011222333333322 2 256 7888888889999998864
No 35
>PRK07213 chlorohydrolase; Provisional
Probab=98.49 E-value=0.00011 Score=70.78 Aligned_cols=133 Identities=12% Similarity=0.029 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHH-----------HHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADF-----------CAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGC 201 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~-----------l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~ 201 (319)
+.|++.+++|+++++||.+|+-....+. ++.+.+.+.. ++.+.||..-+.+.++.+.+.|..+.+.+.
T Consensus 179 ~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~~~~~G~~-~~~i~H~~~~~~~~i~~la~~g~~v~~~P~ 257 (375)
T PRK07213 179 EELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTEIERLINLGFK-PDFIVHATHPSNDDLELLKENNIPVVVCPR 257 (375)
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCChHHHHHhcCCC-CCEEEECCCCCHHHHHHHHHcCCcEEECCc
Confidence 5688899999999999999996543332 3445555543 346889999999999999999988887764
Q ss_pred c-c--c--ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHH
Q 020985 202 S-L--K--TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVA 276 (319)
Q Consensus 202 ~-~--~--~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA 276 (319)
. + . ...++++++. -=++.++||++-. +.+ ++...++.++
T Consensus 258 sn~~l~~g~~~v~~l~~~--Gv~v~lGTD~~~~---------------------------------~~~-~~~~e~~~~~ 301 (375)
T PRK07213 258 ANASFNVGLPPLNEMLEK--GILLGIGTDNFMA---------------------------------NSP-SIFREMEFIY 301 (375)
T ss_pred chhhhccCCccHHHHHHC--CCEEEEeeCCCCC---------------------------------chH-hHHHHHHHHH
Confidence 2 1 1 1223455554 2369999998530 112 2334444455
Q ss_pred HhcCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 277 GCKGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 277 ~~~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
...+++ .+++.+..+.|..+.+++..
T Consensus 302 ~~~~~~-~~~~l~~aT~~gA~~lg~~~ 327 (375)
T PRK07213 302 KLYHIE-PKEILKMATINGAKILGLIN 327 (375)
T ss_pred HHhCcC-HHHHHHHHHHHHHHHhCCCC
Confidence 556899 99999999999999998753
No 36
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=98.49 E-value=2.3e-05 Score=76.62 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc-------hHHHHHHH
Q 020985 92 KHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA-------AADFCAIV 164 (319)
Q Consensus 92 ~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a-------~~~~l~il 164 (319)
+.++++.+++++.++. .+.++. +|+.|......+ ...+.+.+++|+++|.||.+|+++. ..+++++.
T Consensus 164 ~~~~~~~~l~~~al~~-Ga~g~~-~~~~y~~~~~~~----~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a 237 (415)
T cd01297 164 EELAKMRELLREALEA-GALGIS-TGLAYAPRLYAG----TAELVALARVAARYGGVYQTHVRYEGDSILEALDELLRLG 237 (415)
T ss_pred HHHHHHHHHHHHHHHC-CCeEEE-cccccCCcccCC----HHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHH
Confidence 5677788776543222 344553 466553211122 3446777899999999999999853 35556666
Q ss_pred HhccCCCcceEEEeCCCC----------HHHHHHHHHCCCeEe--ecccccc-ChhhHHHHhcCCCCCEEEcCCCCCccc
Q 020985 165 ERNKDRFTGGVTHSFTGS----------AEDRDKLLTFNMYIG--INGCSLK-TAENLDVVRGIPIERMMIETDSPYCEI 231 (319)
Q Consensus 165 ~~~~~~~~~~i~H~f~g~----------~~~~~~~l~~g~y~s--~sg~~~~-~~~~~~~l~~ip~drlLlETD~P~~~~ 231 (319)
++.+. +-.+.|+-+.. .+.++++-..|.-++ ..+..+. .....++++. ....+.||.+-..
T Consensus 238 ~~~g~--r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~---~~~~i~SDh~~~~- 311 (415)
T cd01297 238 RETGR--PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH---PVVMGGSDGGALG- 311 (415)
T ss_pred HHhCC--CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC---CCceeeeCCCcCC-
Confidence 55542 23466876543 355566555554444 4443222 2334466666 5789999964310
Q ss_pred cccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhcCCC
Q 020985 232 KNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCK-GINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~-~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.+ . ...+..+..++.....-+ .++ .+++.+.+..|..++|++.
T Consensus 312 ~~-------------~--------------~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~t~~pA~~~gl~ 355 (415)
T cd01297 312 KP-------------H--------------PRSYGDFTRVLGHYVRERKLLS-LEEAVRKMTGLPARVFGLA 355 (415)
T ss_pred CC-------------C--------------cchhCCHHHHHHHHhcccCCCC-HHHHHHHHHHHHHHHhCCC
Confidence 00 0 011122555554443333 389 9999999999999999985
No 37
>PRK07583 cytosine deaminase-like protein; Validated
Probab=98.47 E-value=5.7e-05 Score=74.38 Aligned_cols=217 Identities=14% Similarity=0.049 Sum_probs=116.6
Q ss_pred HHHHHHHHcCCC---EEEEe-CC-CHHhHHHHHHHHHhcCC-----eEEeeecCCCCcccccccCCCHHHHHHHHHHHHh
Q 020985 34 TVLSRAWSSGVD---RIIVT-GG-SLEESKEALAIAETDGR-----LFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKE 103 (319)
Q Consensus 34 ~vl~~~~~~Gv~---~~v~~-~~-~~~~~~~~~~l~~~~~~-----i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~ 103 (319)
..++.+...|.. ..+.+ +. ....++.+.++.++++. ++..++.|+.... ..+++.+.+.+
T Consensus 126 ~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~p~~~~~~~----------~~~eL~~~v~~ 195 (438)
T PRK07583 126 FGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRIALQAVSLVPLDAYLTD----------AGERLADLVAE 195 (438)
T ss_pred HHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccCeEEEEEecChhhccCc----------hHHHHHHHHHH
Confidence 345555666766 22222 11 13445556666666653 2344566655432 22555555542
Q ss_pred ccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc-------hHHHHHHHHhccCCCcceEE
Q 020985 104 GIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA-------AADFCAIVERNKDRFTGGVT 176 (319)
Q Consensus 104 ~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a-------~~~~l~il~~~~~~~~~~i~ 176 (319)
... .+| |.++.. +. -.+.+...+++|+++|+||.+|+... ...+.+.+.+.+......+.
T Consensus 196 ---~~g--v~g--~~~~~~--~~----~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~~~l~~~~~~~~~~G~~~~v~i~ 262 (438)
T PRK07583 196 ---AGG--LLG--GVTYMN--PD----LDAQLDRLFRLARERGLDLDLHVDETGDPASRTLKAVAEAALRNGFEGKVTCG 262 (438)
T ss_pred ---cCC--EEe--CCCCCC--CC----HHHHHHHHHHHHHHhCCCcEEeECCCCCchHHHHHHHHHHHHHhCCCCCEEEE
Confidence 112 233 445431 11 22568889999999999999999543 12233444444432233466
Q ss_pred EeCCCC-------HHHHHHHHHCCCeEeecccc-c--c------C------hhhHHHHhcCCCCCEEEcCCCCCcccccc
Q 020985 177 HSFTGS-------AEDRDKLLTFNMYIGINGCS-L--K------T------AENLDVVRGIPIERMMIETDSPYCEIKNA 234 (319)
Q Consensus 177 H~f~g~-------~~~~~~~l~~g~y~s~sg~~-~--~------~------~~~~~~l~~ip~drlLlETD~P~~~~~~~ 234 (319)
||..-+ .+.++.+.+.|+.++..+.. + . . ...+++++. + =++.+.||++.. +
T Consensus 263 H~~~l~~~~~~~~~~~i~~la~~gv~vv~~P~~~~~l~~~~~~~~p~~~~~~~v~~l~~a-G-V~valGtD~~~d---~- 336 (438)
T PRK07583 263 HCCSLAVQPEEQAQATIALVAEAGIAIVSLPMCNLYLQDRQPGRTPRWRGVTLVHELKAA-G-IPVAVASDNCRD---P- 336 (438)
T ss_pred eccchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhcCCCcCCCCCCCCcchHHHHHHC-C-CeEEEEeCCCCC---C-
Confidence 987644 35677777889988876532 1 0 0 113455544 3 369999998420 0
Q ss_pred ccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 235 HAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 235 ~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
+. |+ +...+......+..+.. .+.+ .+++.+..+.|..+++++..
T Consensus 337 ----------~~-p~-----------g~~~~~~~~~~a~~~~~-~~~~-~~~al~~~T~~~A~~lg~~~ 381 (438)
T PRK07583 337 ----------FY-AY-----------GDHDMLEVFREAVRILH-LDHP-YDDWPAAVTTTPADIMGLPD 381 (438)
T ss_pred ----------CC-CC-----------CCcCHHHHHHHHHHHHh-cCCc-HHHHHHHHhHHHHHHcCCCC
Confidence 00 00 11111111111112222 2678 88889989999999999864
No 38
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=98.43 E-value=0.00011 Score=71.00 Aligned_cols=138 Identities=11% Similarity=0.050 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHH-----------HHHHHhccCCCc-ceEEEeCCCCHHHHHHHHHCCCeEeec
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADF-----------CAIVERNKDRFT-GGVTHSFTGSAEDRDKLLTFNMYIGIN 199 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~-----------l~il~~~~~~~~-~~i~H~f~g~~~~~~~~l~~g~y~s~s 199 (319)
.+.|...+++|+++|+||.+|+-...... ++.+.+.+.... ..+.|+..-+.+.++.+.+.|+++++.
T Consensus 193 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~~~ 272 (411)
T cd01298 193 DELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVAHN 272 (411)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEC
Confidence 35688899999999999999985432222 222323322112 257799988999999999999998876
Q ss_pred ccc-c----cChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHH
Q 020985 200 GCS-L----KTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEV 274 (319)
Q Consensus 200 g~~-~----~~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~ 274 (319)
+.. + .....+++++. -=++.+.||+|...+ ...|..-......
T Consensus 273 p~~~~~~~~~~~~~~~~~~~--Gv~~~~GsD~~~~~~------------------------------~~~~~~~~~~~~~ 320 (411)
T cd01298 273 PASNMKLASGIAPVPEMLEA--GVNVGLGTDGAASNN------------------------------NLDMFEEMRLAAL 320 (411)
T ss_pred hHHhhhhhhCCCCHHHHHHC--CCcEEEeCCCCccCC------------------------------CcCHHHHHHHHHH
Confidence 542 1 11123455553 224899999874100 0001111111111
Q ss_pred HHHh-----cCCChHHHHHHHHHHHHHHhcCCC
Q 020985 275 VAGC-----KGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 275 iA~~-----~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
+.+. .+++ .+++.+..+.|..+++++.
T Consensus 321 ~~~~~~~~~~~~~-~~~al~~~T~~~A~~lg~~ 352 (411)
T cd01298 321 LQKLAHGDPTALP-AEEALEMATIGGAKALGLD 352 (411)
T ss_pred HhccccCCCCcCC-HHHHHHHHHhhHHHHhCCc
Confidence 1111 1589 9999999999999999876
No 39
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=98.43 E-value=5.5e-05 Score=72.71 Aligned_cols=174 Identities=14% Similarity=0.078 Sum_probs=96.2
Q ss_pred HHHHHHHcCCCEEEEeCC-CH----HhHHHHHHHHHhcCC-e-EEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCC
Q 020985 35 VLSRAWSSGVDRIIVTGG-SL----EESKEALAIAETDGR-L-FCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEK 107 (319)
Q Consensus 35 vl~~~~~~Gv~~~v~~~~-~~----~~~~~~~~l~~~~~~-i-~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 107 (319)
.+.++.+.|+..+...+. .+ ..++...++.+++.. + +....++|... +.. ++..+.++++.+. .
T Consensus 101 ~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~v~~~~~~---g 171 (398)
T cd01293 101 ALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGL--LST----PGGEELMREALKM---G 171 (398)
T ss_pred HHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccc--cCC----CCHHHHHHHHHHh---C
Confidence 467778889987644321 11 224455555555532 2 22334444321 100 1222334444432 1
Q ss_pred CCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccch-------HHHHHHHHhccCCCcceEEEeCC
Q 020985 108 GKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAA-------ADFCAIVERNKDRFTGGVTHSFT 180 (319)
Q Consensus 108 ~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~-------~~~l~il~~~~~~~~~~i~H~f~ 180 (319)
.. .+| |+++.. ......+.|++.+++|+++|+|+.+|+.... ...++.+.+.+......+.||..
T Consensus 172 ~~--~~~--~~~~~~----~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~g~~~~~~i~H~~~ 243 (398)
T cd01293 172 AD--VVG--GIPPAE----IDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSRTLEELAEEAERRGMQGRVTCSHATA 243 (398)
T ss_pred CC--EEe--CCCCCc----CCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchhHHHHHHHHHHHhCCCCCEEeeecch
Confidence 12 333 555432 1123457799999999999999999997543 23456666655322234679875
Q ss_pred CC-------HHHHHHHHHCCCeEeeccccc-c-----------C--hhhHHHHhcCCCCCEEEcCCCC
Q 020985 181 GS-------AEDRDKLLTFNMYIGINGCSL-K-----------T--AENLDVVRGIPIERMMIETDSP 227 (319)
Q Consensus 181 g~-------~~~~~~~l~~g~y~s~sg~~~-~-----------~--~~~~~~l~~ip~drlLlETD~P 227 (319)
-+ .+.++.+.+.|.+++.++... + . ..++++++. -=++.+.||++
T Consensus 244 ~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~~~~~~~~~~~~~~~~~~--Gv~v~lGTD~~ 309 (398)
T cd01293 244 LGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGVTPVKELRAA--GVNVALGSDNV 309 (398)
T ss_pred hhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhcccccCCCCCCCCCcHHHHHHC--CCeEEECCCCC
Confidence 43 244788888899998876421 1 1 123455554 23699999984
No 40
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=98.39 E-value=0.00031 Score=69.06 Aligned_cols=179 Identities=15% Similarity=0.079 Sum_probs=98.6
Q ss_pred HHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcC-CeEEeeecC----CCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 36 LSRAWSSGVDRIIVTGG-SLEESKEALAIAETDG-RLFCTVGVH----PTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 36 l~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~-~i~~~~GiH----P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
+.++-++|+..+...+. .+..++.+.+.+.+.+ +.+.+.+.. |..... ...+.++..++++++......
T Consensus 117 ~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~ 191 (429)
T cd01303 117 LDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRD-----TAESSYRDTKRLIERWHGKSG 191 (429)
T ss_pred HHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCCCccccc-----CHHHHHHHHHHHHHHHhCcCC
Confidence 34667789987765542 2344555555555433 444443332 321111 011234444445443211111
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCC-CcEEEEeccchHHHHHHHHh-------------ccCCCcc-e
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATK-LPMFLHMREAAADFCAIVER-------------NKDRFTG-G 174 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~-~Pv~iH~r~a~~~~l~il~~-------------~~~~~~~-~ 174 (319)
.+.+| +|....+ ..+ .+.+++..++|++++ +||.+|+.....++..+.+. .+...++ .
T Consensus 192 ~v~~~-~~p~~~~--~~s----~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~l~~~~~ 264 (429)
T cd01303 192 RVKPA-ITPRFAP--SCS----EELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGLLTEKTV 264 (429)
T ss_pred ceEEE-EecCcCC--cCC----HHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCCCCCCcE
Confidence 22222 2322211 112 245888999999999 99999997655444333333 3221223 4
Q ss_pred EEEeCCCCHHHHHHHHHCCCeEeecccc-c--c--ChhhHHHHhcCCCCCEEEcCCCCC
Q 020985 175 VTHSFTGSAEDRDKLLTFNMYIGINGCS-L--K--TAENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 175 i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~--~--~~~~~~~l~~ip~drlLlETD~P~ 228 (319)
+.||..-+.+.++.+.+.|+.++..+.. + . ....+++++. -=++.++||++.
T Consensus 265 l~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~l~~g~~~~~~~~~~--Gv~v~lGtD~~~ 321 (429)
T cd01303 265 LAHCVHLSEEEFNLLKERGASVAHCPTSNLFLGSGLFDVRKLLDA--GIKVGLGTDVGG 321 (429)
T ss_pred EEeCCCCCHHHHHHHHHcCCEEEECccchhhhccCCCCHHHHHHC--CCeEEEeccCCC
Confidence 6799999999999999999998887642 1 1 1123455554 235899999874
No 41
>PRK06380 metal-dependent hydrolase; Provisional
Probab=98.39 E-value=0.00041 Score=67.72 Aligned_cols=94 Identities=19% Similarity=0.160 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCC-----------Ccc-eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDR-----------FTG-GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~-----------~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.++...++|+++|+|+.+|+.....++....++++.. .++ .+.||..-+.+.++.+.+.|+.+++.+
T Consensus 186 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 265 (418)
T PRK06380 186 ETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNS 265 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhCCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHcCCEEEECH
Confidence 56899999999999999999988765655444443321 123 456998888999999999999998876
Q ss_pred cc-c--cC---hhhHHHHhcCCCCCEEEcCCCCC
Q 020985 201 CS-L--KT---AENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 201 ~~-~--~~---~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.. + .. ..++++++. -=++-++||++.
T Consensus 266 ~sn~~l~~~g~~p~~~~~~~--Gv~v~lGTD~~~ 297 (418)
T PRK06380 266 VSNFKLGTGGSPPIPEMLDN--GINVTIGTDSNG 297 (418)
T ss_pred HHHHhhccCCCCcHHHHHHC--CCeEEEcCCCCc
Confidence 52 1 11 123455554 235999999864
No 42
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=98.38 E-value=0.00038 Score=68.73 Aligned_cols=138 Identities=10% Similarity=0.007 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHHHHH-----------HhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeec
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIV-----------ERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGIN 199 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il-----------~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~s 199 (319)
.+.|+..+++|.++|+|+.+|+.....+....+ .+.+...++ .+.||..-+.+.++.+.+.|+.+++.
T Consensus 213 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~ 292 (451)
T PRK08203 213 RELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHCVHLDDAEIARLARTGTGVAHC 292 (451)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEeCCCHHHHHHHHhcCCeEEEC
Confidence 355888899999999999999976554433333 333321223 46799999999999999999999886
Q ss_pred ccc-c----cChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHH
Q 020985 200 GCS-L----KTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEV 274 (319)
Q Consensus 200 g~~-~----~~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~ 274 (319)
+.. . .....+++++. + =++.+.||+|...+ ...|..-......
T Consensus 293 P~~~~~l~~~~~~~~~~~~~-G-v~v~lGtD~~~~~~------------------------------~~~~~~~~~~~~~ 340 (451)
T PRK08203 293 PCSNMRLASGIAPVRELRAA-G-VPVGLGVDGSASND------------------------------GSNLIGEARQALL 340 (451)
T ss_pred cHHhhhhccCCCCHHHHHHC-C-CeEEEecCCCccCC------------------------------CcCHHHHHHHHHH
Confidence 642 1 11223455554 2 26999999874100 0001111111111
Q ss_pred HHHhc----CCChHHHHHHHHHHHHHHhcCCC
Q 020985 275 VAGCK----GINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 275 iA~~~----~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
+.... .++ .+++.+..+.|..+++++.
T Consensus 341 ~~~~~~~~~~i~-~~~~l~~~T~~~A~~lg~~ 371 (451)
T PRK08203 341 LQRLRYGPDAMT-AREALEWATLGGARVLGRD 371 (451)
T ss_pred HhhcccCCCCCC-HHHHHHHHHHHHHHHhCCC
Confidence 12221 378 9999999999999999875
No 43
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=98.37 E-value=0.00028 Score=69.54 Aligned_cols=135 Identities=15% Similarity=0.065 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHH-----------hccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeec
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIVE-----------RNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGIN 199 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~-----------~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~s 199 (319)
.+.|++.+++|.++|+||.+|+.....+....++ +.+...++ .+.||..-+.+.++.+.+.|+.++..
T Consensus 201 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~i~~~ 280 (443)
T PRK09045 201 DENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGCSVVHC 280 (443)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEEEC
Confidence 3568899999999999999999765444433333 33222223 35699998899999999999999876
Q ss_pred ccc-cc----ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHH
Q 020985 200 GCS-LK----TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEV 274 (319)
Q Consensus 200 g~~-~~----~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~ 274 (319)
+.. +. ....+++++. .=++.+.||+|... .+.++...++.
T Consensus 281 P~~~~~~~~~~~~~~~l~~~--Gv~v~lGtD~~~~~---------------------------------~~~~~~~~~~~ 325 (443)
T PRK09045 281 PESNLKLASGFCPVAKLLQA--GVNVALGTDGAASN---------------------------------NDLDLFGEMRT 325 (443)
T ss_pred HHHHhhhccCCCcHHHHHHC--CCeEEEecCCCCCC---------------------------------CCccHHHHHHH
Confidence 542 11 1223455554 23589999987510 00111111111
Q ss_pred ---HHH-----hcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 275 ---VAG-----CKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 275 ---iA~-----~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
+.+ -.+++ .+++.+..+.|..+.+++.
T Consensus 326 a~~~~~~~~~~~~~~~-~~~al~~~T~~~A~~lg~~ 360 (443)
T PRK09045 326 AALLAKAVAGDATALP-AHTALRMATLNGARALGLD 360 (443)
T ss_pred HHHHHhhccCCCCcCC-HHHHHHHHhHHHHHHcCCC
Confidence 111 12478 9999999999999998864
No 44
>PRK08204 hypothetical protein; Provisional
Probab=98.37 E-value=0.00014 Score=71.67 Aligned_cols=94 Identities=13% Similarity=-0.005 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEecc----chHHHHHHHHhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeecccc-c--c
Q 020985 133 KYFEKQFELAYATKLPMFLHMRE----AAADFCAIVERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGINGCS-L--K 204 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~----a~~~~l~il~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~--~ 204 (319)
+.+...+++|.++|+||.+|+-. ...+.++.+.+.+...++ .+.||...+.+.++.+.+.|.++++.+.. . .
T Consensus 201 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g~~v~~~P~~~~~~g 280 (449)
T PRK08204 201 EVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPEIEMMMG 280 (449)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcCCCEEEChHHHhhhc
Confidence 45777889999999999999942 223456666666533233 47799999999999999999999987642 1 1
Q ss_pred --ChhhHHHHhcCCCCCEEEcCCCCC
Q 020985 205 --TAENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 205 --~~~~~~~l~~ip~drlLlETD~P~ 228 (319)
....+++++. -=++.++||++.
T Consensus 281 ~~~~~~~~~~~~--Gv~v~lGtD~~~ 304 (449)
T PRK08204 281 HGYPVTGRLLAH--GVRPSLGVDVVT 304 (449)
T ss_pred CCCCcHHHHHhc--CCceeeccccCC
Confidence 1123455554 236899999864
No 45
>PRK06687 chlorohydrolase; Validated
Probab=98.34 E-value=0.00022 Score=69.70 Aligned_cols=134 Identities=18% Similarity=0.142 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHH-----------HHHHhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFC-----------AIVERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l-----------~il~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.+++.+++|+++|+|+.+|+-....+.- +.+.+.+...++ .+.||..-+.+.++.+.+.|+.++..+
T Consensus 196 e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~~P 275 (419)
T PRK06687 196 DLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNP 275 (419)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECc
Confidence 45888999999999999999976543332 234444322223 356999889999999999999988765
Q ss_pred cc-cc----ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHH
Q 020985 201 CS-LK----TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVV 275 (319)
Q Consensus 201 ~~-~~----~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~i 275 (319)
.. .+ -...+++++. -=++-+.||++- .|.+.++....+..
T Consensus 276 ~sn~~l~~g~~p~~~~~~~--Gv~v~lGtD~~~---------------------------------~~~~~~~~~~~~~~ 320 (419)
T PRK06687 276 ISNLKLASGIAPIIQLQKA--GVAVGIATDSVA---------------------------------SNNNLDMFEEGRTA 320 (419)
T ss_pred HHhhhhccCCCcHHHHHHC--CCeEEEeCCCCC---------------------------------CCCChhHHHHHHHH
Confidence 42 11 1123455554 235899999853 11122333333322
Q ss_pred ---HHhc-----CCChHHHHHHHHHHHHHHhcCCC
Q 020985 276 ---AGCK-----GINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 276 ---A~~~-----~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.++. .++ .+++.+..+.|..+.+++.
T Consensus 321 ~~~~~~~~~~~~~~~-~~~~l~~aT~~gA~~lg~~ 354 (419)
T PRK06687 321 ALLQKMKSGDASQFP-IETALKVLTIEGAKALGME 354 (419)
T ss_pred HHHhccccCCCccCC-HHHHHHHHhHHHHHHcCCC
Confidence 2221 378 8899999999999999875
No 46
>PLN02942 dihydropyrimidinase
Probab=98.26 E-value=0.0003 Score=70.24 Aligned_cols=257 Identities=13% Similarity=0.082 Sum_probs=125.4
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC-----HHhHHHHHHHHHhcCCeEEeeecCCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS-----LEESKEALAIAETDGRLFCTVGVHPT 79 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~-----~~~~~~~~~l~~~~~~i~~~~GiHP~ 79 (319)
-+||+|+|+....+.. .+..+...--+.+...|+..++.+... .+..+...+.+.+.. .-+|+|..
T Consensus 58 G~ID~H~H~~~~~~~~------~~~ed~~s~s~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~ 128 (486)
T PLN02942 58 GGIDPHTHLAMPFMGT------ETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSC---MDYGFHMA 128 (486)
T ss_pred CEeeeeeccCcccCCC------cccchHHHHHHHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcC---CCEEEEEE
Confidence 5899999997642110 012455444556677888887766321 222333333333222 12233311
Q ss_pred CcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchH-
Q 020985 80 RCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAA- 158 (319)
Q Consensus 80 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~- 158 (319)
... .. +..++++.++..+ ..+.++++ .+.+.. .+. .-.+.+.+.++.|+++++||++|+.....
T Consensus 129 ~~~-~~-----~~~~~e~~~l~~~----~gv~~~k~-~~~~~~-~~~---~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~ 193 (486)
T PLN02942 129 ITK-WD-----DTVSRDMETLVKE----KGINSFKF-FMAYKG-SLM---VTDELLLEGFKRCKSLGALAMVHAENGDAV 193 (486)
T ss_pred ecC-Cc-----HhHHHHHHHHHHh----CCCceEEE-EEecCC-CCC---CCHHHHHHHHHHHHhcCCeEEEEcCCHHHH
Confidence 110 00 1234555555442 23445543 333321 111 11346888899999999999999864211
Q ss_pred -H-------------------------------HHHHHHhccCCCcceEEEeCCCCH-HHHHHHHHCCCeEeeccc----
Q 020985 159 -D-------------------------------FCAIVERNKDRFTGGVTHSFTGSA-EDRDKLLTFNMYIGINGC---- 201 (319)
Q Consensus 159 -~-------------------------------~l~il~~~~~~~~~~i~H~f~g~~-~~~~~~l~~g~y~s~sg~---- 201 (319)
. ++.+....+ .+-.+.|+-+.+. +.++.+-+.|..++...+
T Consensus 194 ~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g--~~~~i~H~s~~~~~e~i~~~k~~G~~Vt~e~~ph~L 271 (486)
T PLN02942 194 FEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVN--TPLYVVHVMSIDAMEEIARARKSGQRVIGEPVVSGL 271 (486)
T ss_pred HHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHCCCcEEEEECchhh
Confidence 0 001112222 1233669877665 777777777755542221
Q ss_pred ----------------------cccChhhHHHHhcC--CCCCEEEcCC-CCCccccccccccccccccCCCccccccccc
Q 020985 202 ----------------------SLKTAENLDVVRGI--PIERMMIETD-SPYCEIKNAHAGISFVKSTWPSKKKEKYDQD 256 (319)
Q Consensus 202 ----------------------~~~~~~~~~~l~~i--p~drlLlETD-~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~ 256 (319)
-+++...++.+... ---...+.|| +|+..-.. ..+ .+.|..
T Consensus 272 ~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~~~~~k-~~~------------~~~~~~- 337 (486)
T PLN02942 272 VLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPFNSTQK-AFG------------KDDFRK- 337 (486)
T ss_pred eeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCCChHHh-hcc------------cCCHhh-
Confidence 02222223222211 1347899999 56521000 000 000000
Q ss_pred ccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 257 SLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 257 ~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.+......-..++..++.+..-..++ .+++.+....|..++|++.
T Consensus 338 ~~~G~~g~e~~l~~~~~~~~~~~~i~-~~~~l~~~t~~pA~~lgl~ 382 (486)
T PLN02942 338 IPNGVNGIEERMHLVWDTMVESGQIS-PTDYVRVTSTECAKIFNIY 382 (486)
T ss_pred CCCCcccHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhCCC
Confidence 00000111122444444444444589 9999999999999999984
No 47
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=98.26 E-value=0.00011 Score=67.17 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCcEEEEeccchH----HHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc-c--c--C
Q 020985 135 FEKQFELAYATKLPMFLHMREAAA----DFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS-L--K--T 205 (319)
Q Consensus 135 f~~qlelA~~~~~Pv~iH~r~a~~----~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~--~--~ 205 (319)
|++.+++|+++|+||.+|+-.... ..++.+.+.+ +..+.||..-+.+.++.+.+.|+.++..+.. + . .
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~g~~~i~~~~~~~---~~~i~H~~~l~~~~~~~la~~g~~v~~~P~sn~~l~~g~ 203 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESVGMTDIERALDLE---PDLLVHGTHLTDEDLELVRENGVPVVLCPRSNLYFGVGI 203 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCCCchhHHHHHhCC---CCEEEEcCCCCHHHHHHHHHcCCcEEEChhhHHHhCCCC
Confidence 899999999999999999975432 2344444443 3457899999999999999999999987642 1 1 1
Q ss_pred hhhHHHHhcCCCCCEEEcCCCCC
Q 020985 206 AENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 206 ~~~~~~l~~ip~drlLlETD~P~ 228 (319)
...+++++. -=++-+.||++.
T Consensus 204 ~p~~~l~~~--Gv~v~lGtD~~~ 224 (263)
T cd01305 204 PPVAELLKL--GIKVLLGTDNVM 224 (263)
T ss_pred CCHHHHHHC--CCcEEEECCCCc
Confidence 224566655 246999999864
No 48
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=98.25 E-value=0.00052 Score=67.42 Aligned_cols=137 Identities=13% Similarity=0.041 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHH-----------HHHHHHhccCCCcce-EEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAAD-----------FCAIVERNKDRFTGG-VTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~-----------~l~il~~~~~~~~~~-i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.+...+++|+++|+||.+|+-....+ .++.+.+.+...++. +.||..-+.+.++.+.+.|++++..+
T Consensus 190 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~~v~~~P 269 (430)
T PRK06038 190 EFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGVNVSHNP 269 (430)
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCCEEEECh
Confidence 568888999999999999999865332 234444444322333 57999999999999999999999876
Q ss_pred cc-cc----ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHH
Q 020985 201 CS-LK----TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVV 275 (319)
Q Consensus 201 ~~-~~----~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~i 275 (319)
.. +. ....+++++. -=++-++||++.... ...|..........
T Consensus 270 ~~n~~~~~~~~p~~~~~~~--Gv~v~lGtD~~~~~~------------------------------~~d~~~~~~~a~~~ 317 (430)
T PRK06038 270 VSNMKLASGIAPVPKLLER--GVNVSLGTDGCASNN------------------------------NLDMFEEMKTAALL 317 (430)
T ss_pred HHhhhhccCCCCHHHHHHC--CCeEEEeCCCCccCC------------------------------CcCHHHHHHHHHHH
Confidence 42 11 1123456554 235999999764100 00011111111111
Q ss_pred HHh-----cCCChHHHHHHHHHHHHHHhcCCC
Q 020985 276 AGC-----KGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 276 A~~-----~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.++ .+++ .+++.+..+.|..+.++..
T Consensus 318 ~~~~~~~~~~~~-~~~al~~aT~~gA~~lg~~ 348 (430)
T PRK06038 318 HKVNTMDPTALP-ARQVLEMATVNGAKALGIN 348 (430)
T ss_pred hhhccCCCCcCC-HHHHHHHHhHHHHHHhCCC
Confidence 111 2578 8999999999999999874
No 49
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=98.21 E-value=0.00025 Score=69.51 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHHHH-----------HHhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFCAI-----------VERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~i-----------l~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.|++..++|+++++|+.+|+-....++-.+ +.+.+...++ .+.||..-+.+.++.+.+.|.+++..+
T Consensus 189 ~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~P 268 (424)
T PRK08393 189 ALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHNP 268 (424)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEECH
Confidence 5688899999999999999997655443333 3333322233 467999889999999999999999877
Q ss_pred cc---ccC--hhhHHHHhcCCCCCEEEcCCCCC
Q 020985 201 CS---LKT--AENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 201 ~~---~~~--~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.. +.. ...+++++. --++.+.||++.
T Consensus 269 ~sn~~lg~g~~~~~~~~~~--Gv~v~lGtD~~~ 299 (424)
T PRK08393 269 ASNMKLGSGVMPLRKLLNA--GVNVALGTDGAA 299 (424)
T ss_pred HHHHhhccCCCCHHHHHHC--CCcEEEecCCCc
Confidence 42 111 123455554 357999999875
No 50
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=98.21 E-value=0.00035 Score=68.80 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHH-----------HHHHhccCCCc-ceEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFC-----------AIVERNKDRFT-GGVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l-----------~il~~~~~~~~-~~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.|++.+++|+++|+|+.+|+.....++- +.+.+.+...+ ..+.||..-+.+.++.+.+.|..++..+
T Consensus 199 ~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~v~~~P 278 (445)
T PRK07228 199 ELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTHVTHCP 278 (445)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCeEEECh
Confidence 45888899999999999999975433322 22333322122 3467999888999999999999988765
Q ss_pred cc-cc----ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHH
Q 020985 201 CS-LK----TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVV 275 (319)
Q Consensus 201 ~~-~~----~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~i 275 (319)
.. +. ...++++++. --++.+.||++...+ ...|..-......+
T Consensus 279 ~~~~~~~~~~~p~~~~~~~--Gv~v~lGtD~~~~~~------------------------------~~~~~~~~~~~~~~ 326 (445)
T PRK07228 279 SSNLKLASGIAPVPDLLER--GINVALGADGAPCNN------------------------------TLDPFTEMRQAALI 326 (445)
T ss_pred HHhhhcccccCcHHHHHHC--CCeEEEcCCCCccCC------------------------------CccHHHHHHHHHHH
Confidence 42 11 1123466665 345899999865210 00111111111111
Q ss_pred HHh-----cCCChHHHHHHHHHHHHHHhcCCC
Q 020985 276 AGC-----KGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 276 A~~-----~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.+. ..++ .+++.+....|..+.+++.
T Consensus 327 ~~~~~~~~~~~s-~~~al~~~T~~~A~~lg~~ 357 (445)
T PRK07228 327 QKVDRLGPTAMP-ARTVFEMATLGGAKAAGFE 357 (445)
T ss_pred hhhccCCCcccC-HHHHHHHHHHHHHHHhCCC
Confidence 111 2578 9999999999999999874
No 51
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=98.20 E-value=0.0011 Score=65.16 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHH-----------HHHHHhccCCCc-ceEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADF-----------CAIVERNKDRFT-GGVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~-----------l~il~~~~~~~~-~~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.|++..++|+++|+|+.+|+-....++ ++.|.+.+...+ ..+.||..-+.++++.+.+.|..++..+
T Consensus 197 e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 276 (435)
T PRK15493 197 ELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNP 276 (435)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEECh
Confidence 5688889999999999999997643332 344444443223 3467998889999999999999998876
Q ss_pred cc-c--c--ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHH--
Q 020985 201 CS-L--K--TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLE-- 273 (319)
Q Consensus 201 ~~-~--~--~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~-- 273 (319)
.. + . ....+++++. -=++-++||++-. |.+.++...++
T Consensus 277 ~sn~~l~~g~~p~~~~~~~--Gv~v~lGtD~~~~---------------------------------~~~~d~~~~~~~a 321 (435)
T PRK15493 277 NSNLKLGSGIANVKAMLEA--GIKVGIATDSVAS---------------------------------NNNLDMFEEMRIA 321 (435)
T ss_pred HHHHHHhcCcccHHHHHHC--CCeEEEccCcccc---------------------------------CCCcCHHHHHHHH
Confidence 42 1 1 1123455554 3368999998530 11112222222
Q ss_pred -HHHHh-----cCCChHHHHHHHHHHHHHHhcCCC
Q 020985 274 -VVAGC-----KGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 274 -~iA~~-----~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.+.+. ..++ .+++.+..+.|..+.+++.
T Consensus 322 ~~~~~~~~~~~~~~~-~~~~l~~aT~~gA~~lg~~ 355 (435)
T PRK15493 322 TLLQKGIHQDATALP-VETALTLATKGAAEVIGMK 355 (435)
T ss_pred HHHHhhccCCCCcCC-HHHHHHHHhHHHHHHcCCC
Confidence 22211 2478 8999999999999999875
No 52
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=98.15 E-value=0.0009 Score=64.51 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=69.1
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcCC--eEEeeec
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDGR--LFCTVGV 76 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~~--i~~~~Gi 76 (319)
-+||.|+|+....+. +..+.....+.+...|+..++.++. +.+.+....+.+++.+. +++..|+
T Consensus 15 G~iD~HvH~~~~~~~--------~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (374)
T cd01317 15 GLVDLHVHLREPGFE--------YKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRVLPIGAL 86 (374)
T ss_pred CEEeeccccCCCCcc--------ccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeEEEEEEE
Confidence 589999999765321 1257888888999999999998853 23444444455544332 3344555
Q ss_pred CCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 77 HPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 77 HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
.++... +.++++.++... .+.++.. +.. ...+ ...+.+.++.++++|.||++|+.+
T Consensus 87 ~~~~~~---------~~~~~i~~l~~~-----G~~~~k~----~~~-~~~~----~~~l~~~~~~~~~~g~~v~~H~E~ 142 (374)
T cd01317 87 TKGLKG---------EELTEIGELLEA-----GAVGFSD----DGK-PIQD----AELLRRALEYAAMLDLPIIVHPED 142 (374)
T ss_pred eeCCCc---------ccHHHHHHHHHC-----CcEEEEc----CCc-CCCC----HHHHHHHHHHHHhcCCeEEEecCC
Confidence 444211 224555555431 2334431 100 0011 234666778888889999999853
No 53
>PRK07369 dihydroorotase; Provisional
Probab=98.14 E-value=0.0012 Score=64.74 Aligned_cols=244 Identities=16% Similarity=0.099 Sum_probs=133.0
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcCC--eEEeeec
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDGR--LFCTVGV 76 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~~--i~~~~Gi 76 (319)
-+||.|+|+..+.+. +..+....-+.+...||..++.+.. +.+.+....+.+++... +....++
T Consensus 58 G~ID~H~H~~~~~~~--------~~e~~~s~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~ 129 (418)
T PRK07369 58 GLVDLYSHSGEPGFE--------ERETLASLAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGAL 129 (418)
T ss_pred CEEecccccCCCCcC--------CCccHHHHHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEE
Confidence 589999998754221 1367778888888999998888752 34555555555554332 2333344
Q ss_pred CCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc
Q 020985 77 HPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA 156 (319)
Q Consensus 77 HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a 156 (319)
-++... +.++++.++.+ ..+.++- ++.. ..+ ...+.+.++.++++|+|+++|+.+.
T Consensus 130 ~~~~~~---------~~~~ei~~l~~-----~Gv~~f~----~~~~--~~~----~~~l~~~~~~~~~~~~~v~~H~Ed~ 185 (418)
T PRK07369 130 TLGGQG---------KQLTELAELAA-----AGVVGFT----DGQP--LEN----LALLRRLLEYLKPLGKPVALWPCDR 185 (418)
T ss_pred eeCCCC---------ccHhhHHHHHH-----CCCEEEE----CCCc--CCC----HHHHHHHHHHHHhcCCeEEEecCCh
Confidence 333211 23455665543 1244442 2221 111 2357777889999999999999642
Q ss_pred h------------------------------HHHHHHHHhccCCCcceEEEeCCC-CHHHHHHHHHCC--CeEeeccc--
Q 020985 157 A------------------------------ADFCAIVERNKDRFTGGVTHSFTG-SAEDRDKLLTFN--MYIGINGC-- 201 (319)
Q Consensus 157 ~------------------------------~~~l~il~~~~~~~~~~i~H~f~g-~~~~~~~~l~~g--~y~s~sg~-- 201 (319)
. .+++.+.+..+. +--+.|.-++ +.+.++++-+.| ++..+++.
T Consensus 186 ~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~--~~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL 263 (418)
T PRK07369 186 SLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGT--PVHLMRISTARSVELIAQAKARGLPITASTTWMHL 263 (418)
T ss_pred hhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC--cEEEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHH
Confidence 1 133444444432 2235576442 344555554455 33322211
Q ss_pred ------------------cccChhhH----HHHhcCCCCCEEEcCCC-CCccccccccccccccccCCCccccccccccc
Q 020985 202 ------------------SLKTAENL----DVVRGIPIERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSL 258 (319)
Q Consensus 202 ------------------~~~~~~~~----~~l~~ip~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~ 258 (319)
-+++++-+ +.++.--+| ++.||. |+..-. +...|.. .+
T Consensus 264 ~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id--~i~SDHaP~~~~~----------------K~~~~~~-~~ 324 (418)
T PRK07369 264 LLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVID--AIAIDHAPYTYEE----------------KTVAFAE-AP 324 (418)
T ss_pred hccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCC--EEEcCCCCCCHHH----------------ccCCHhH-CC
Confidence 12333323 444443455 888884 552100 0000100 01
Q ss_pred CCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 259 VKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 259 ~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
..-..-...++..++.+.+-.+++ .+++.+.+..|..++|++.
T Consensus 325 ~G~~G~e~~l~~~~~~~v~~~~i~-l~~~v~~~s~nPA~~lgl~ 367 (418)
T PRK07369 325 PGAIGLELALPLLWQNLVETGELS-ALQLWQALSTNPARCLGQE 367 (418)
T ss_pred CCceeHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHhHHHHhCCC
Confidence 111222335666666666666899 9999999999999999985
No 54
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=98.05 E-value=0.0026 Score=60.05 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccc--hHHHHHHHHhccCCCcceEEEeCCC--CHHHHHHHHHCCCeEeecccc-c--c
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREA--AADFCAIVERNKDRFTGGVTHSFTG--SAEDRDKLLTFNMYIGINGCS-L--K 204 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a--~~~~l~il~~~~~~~~~~i~H~f~g--~~~~~~~~l~~g~y~s~sg~~-~--~ 204 (319)
.+.|...++.|+++|+|+.+|+... ..++.+.+.+.+. ..+.|+..- +.+.++.+.+.|+.+.+.+.. + .
T Consensus 171 ~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~---~ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~l~ 247 (324)
T TIGR01430 171 PPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGA---TRIGHGVRALEDPELLKRLAQENITLEVCPTSNVALG 247 (324)
T ss_pred HHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCc---hhcchhhhhccCHHHHHHHHHcCceEEECCccccccc
Confidence 3568899999999999999999865 4566666656653 347898776 667888888899999887652 1 1
Q ss_pred ------ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHh
Q 020985 205 ------TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGC 278 (319)
Q Consensus 205 ------~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~ 278 (319)
...++++++. .=++-+.||.|.. +. ..+..-+..+.+.
T Consensus 248 ~~~~~~~~pi~~l~~~--Gv~v~igTD~~~~---------------------------------~~-~~l~~e~~~a~~~ 291 (324)
T TIGR01430 248 VVKSLAEHPLRRFLEA--GVKVTLNSDDPAY---------------------------------FG-SYLTEEYEIAAKH 291 (324)
T ss_pred ccCCcccChHHHHHHC--CCEEEECCCCCcc---------------------------------cC-CCHHHHHHHHHHH
Confidence 1124566654 1258999999862 11 1566777777777
Q ss_pred cCCChHHHHHHHHHHHHHHhc
Q 020985 279 KGINDIDQLSRTLYHNTCRVF 299 (319)
Q Consensus 279 ~~is~~e~~~~~~~~N~~rlf 299 (319)
.|++ .+++.+.+...+.-.|
T Consensus 292 ~~l~-~~el~~~~~na~~~~f 311 (324)
T TIGR01430 292 AGLT-EEELKQLARNALEGSF 311 (324)
T ss_pred cCCC-HHHHHHHHHHHHHHhC
Confidence 8999 9998876666665555
No 55
>PRK05451 dihydroorotase; Provisional
Probab=97.97 E-value=0.0021 Score=61.34 Aligned_cols=121 Identities=14% Similarity=0.042 Sum_probs=65.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHH-HHHhcC---CeEEee
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALA-IAETDG---RLFCTV 74 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~-l~~~~~---~i~~~~ 74 (319)
+-||.||||-.. . ..++++.-.+ +++..++.+.. +.+..+...+ ++++++ ++++..
T Consensus 9 ~~~d~h~hl~~~--~-----------~~~~~~~~~~-~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~ 74 (345)
T PRK05451 9 RPDDWHLHLRDG--A-----------MLKAVVPYTA-RQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLM 74 (345)
T ss_pred CcceEEEecCCc--h-----------HHHHHHHHHH-HhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEE
Confidence 468999999864 1 2334555555 56999998743 2233333233 334433 356677
Q ss_pred ecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCC-CCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 75 GVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLH-FCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 75 GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~-~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
|+++.... .+++++++.+. +-+.++ .+-..+.... .... .-...+.+.++.|.++|+||++|+
T Consensus 75 ~i~~~~~~----------~~~El~~~~~~----Gvv~g~-Kl~~~~~~~~~~~~~-~dd~~l~~~~e~~~~~g~~V~vHa 138 (345)
T PRK05451 75 TLYLTDNT----------DPDELERAKAS----GVVTAA-KLYPAGATTNSDAGV-TDIEKIYPVLEAMQKLGMPLLVHG 138 (345)
T ss_pred EEEeCCCC----------CHHHHHHHHHC----CCEEEE-EEecccCccCCccCc-CCHHHHHHHHHHHHHcCCEEEEec
Confidence 88876321 23566665431 111133 2221110000 0000 012357777899999999999999
Q ss_pred cc
Q 020985 154 RE 155 (319)
Q Consensus 154 r~ 155 (319)
.+
T Consensus 139 E~ 140 (345)
T PRK05451 139 EV 140 (345)
T ss_pred CC
Confidence 86
No 56
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.96 E-value=0.0071 Score=59.24 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHH-----------HHHHhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFC-----------AIVERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l-----------~il~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.+++..++|++ |+|+.+|+-+...++. +.+.+.+...++ .+.||..-+.+.++.+.+.|..+++.+
T Consensus 207 e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P 285 (418)
T cd01313 207 EQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETLLLGRSGAVVGLCP 285 (418)
T ss_pred HHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHcCCEEEECC
Confidence 568888999999 9999999965544432 333333322233 467999999999999999999999887
Q ss_pred cc-cc----ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHH--HHH
Q 020985 201 CS-LK----TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQ--VLE 273 (319)
Q Consensus 201 ~~-~~----~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~--v~~ 273 (319)
.. ++ ....+++++. -=++-+.||++.. .+....+.. .+.
T Consensus 286 ~sn~~lg~g~~p~~~l~~~--Gv~v~lGtD~~~~--------------------------------~d~~~~~~~~~~~~ 331 (418)
T cd01313 286 TTEANLGDGIFPAAALLAA--GGRIGIGSDSNAR--------------------------------IDLLEELRQLEYSQ 331 (418)
T ss_pred CchhhccCCCCCHHHHHHC--CCcEEEecCCCCC--------------------------------cCHHHHHHHHHHHH
Confidence 52 11 1224566654 2358999998651 000011111 111
Q ss_pred HHHH--------hcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 274 VVAG--------CKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 274 ~iA~--------~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
++.. -..++ .+++.+..+.|..+.+++.
T Consensus 332 ~~~~~~~~~~~~~~~~~-~~~~l~~~T~~gA~alg~~ 367 (418)
T cd01313 332 RLRDRARNVLATAGGSS-ARALLDAALAGGAQALGLA 367 (418)
T ss_pred HHHhcccccccccCCCC-HHHHHHHHHHHHHHHhCCC
Confidence 1111 12678 9999999999999999875
No 57
>PRK12393 amidohydrolase; Provisional
Probab=97.94 E-value=0.01 Score=58.74 Aligned_cols=136 Identities=12% Similarity=-0.011 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccC-----------CCcc-eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKD-----------RFTG-GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~-----------~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.|+..+++|.++++|+.+|+.....++-..++.++. -.++ .+.||..-+.+.++.+.+.|..++..+
T Consensus 218 e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 297 (457)
T PRK12393 218 ELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGIAHCP 297 (457)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECc
Confidence 5688889999999999999998765554444433321 1122 367999989999999999999998877
Q ss_pred cc-c--c--ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHH--HH
Q 020985 201 CS-L--K--TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQV--LE 273 (319)
Q Consensus 201 ~~-~--~--~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v--~~ 273 (319)
.. . . -...+++++. -=++.+.||++... +.+..+... ..
T Consensus 298 ~sn~~lg~g~~~~~~~~~~--Gv~v~lGtD~~~~~--------------------------------~~~d~~~~~~~a~ 343 (457)
T PRK12393 298 QSNGRLGSGIAPALAMEAA--GVPVSLGVDGAASN--------------------------------ESADMLSEAHAAW 343 (457)
T ss_pred hhhhhhcccCCCHHHHHHC--CCeEEEecCCcccC--------------------------------CCccHHHHHHHHH
Confidence 52 1 1 1223566654 33699999986410 001111111 11
Q ss_pred HHHHh----cCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 274 VVAGC----KGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 274 ~iA~~----~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
.+... ..++ .+++.+....|..+++++..
T Consensus 344 ~~~~~~~~~~~~~-~~~~l~~~T~~~A~~l~~~~ 376 (457)
T PRK12393 344 LLHRAEGGADATT-VEDVVHWGTAGGARVLGLDA 376 (457)
T ss_pred HHhhhcCCCCCCC-HHHHHHHHhHHHHHHhCCCC
Confidence 11111 1378 99999999999999998754
No 58
>PLN02795 allantoinase
Probab=97.94 E-value=0.001 Score=66.81 Aligned_cols=255 Identities=13% Similarity=0.105 Sum_probs=129.6
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC--CCH-HhHHHHHHHHHhc--CCeEEeeecCCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG--GSL-EESKEALAIAETD--GRLFCTVGVHPT 79 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~--~~~-~~~~~~~~l~~~~--~~i~~~~GiHP~ 79 (319)
-+||.|+|+....+. +..++....+.+...||..++.+. +.+ .+....++...+. ...+.-+|+|..
T Consensus 100 G~ID~H~H~~~~~~~--------~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~ 171 (505)
T PLN02795 100 GLIDVHVHLNEPGRT--------EWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGG 171 (505)
T ss_pred CEEecccCcCCCCcc--------chhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceec
Confidence 589999999754221 124566667777778998888875 222 2333333332222 234455677763
Q ss_pred CcccccccCCCHHHHHHHHHHHHhccCCCCEEEE----EeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 80 RCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAI----GECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 80 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aI----GEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
..... .+.++.+.++.+. .++++ +.-|.+.+ . ......+.+.++.|+++|+||++|+.+
T Consensus 172 ~~~~~------~~~~~~l~~~~~~-----G~~g~k~f~~~~~~~~~----~--~~~~~~l~~~~~~a~~~g~~v~iH~E~ 234 (505)
T PLN02795 172 LVPEN------AHNASVLEELLDA-----GALGLKSFMCPSGINDF----P--MTTATHIKAALPVLAKYGRPLLVHAEV 234 (505)
T ss_pred ccCcc------hhHHHHHHHHHHC-----CCcEEEEEecccCCCCc----c--cCCHHHHHHHHHHHHHhCCEEEEecCC
Confidence 22111 1234555555431 11111 11111111 1 123456888999999999999999986
Q ss_pred ch-------------------------------HHHHHHHHhccC--C--Ccce-EEEeCCC--CHHHHHHHHHCCCeE-
Q 020985 156 AA-------------------------------ADFCAIVERNKD--R--FTGG-VTHSFTG--SAEDRDKLLTFNMYI- 196 (319)
Q Consensus 156 a~-------------------------------~~~l~il~~~~~--~--~~~~-i~H~f~g--~~~~~~~~l~~g~y~- 196 (319)
.. ..++.+.+..+. . ..++ +.|--+. +.+.++++-+.|..+
T Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt 314 (505)
T PLN02795 235 VSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVT 314 (505)
T ss_pred hhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEE
Confidence 42 112223333300 0 1233 5576543 345556655567333
Q ss_pred -eeccc--------------------cccChhhH----HHHhcCCCCCEEEcCCC-CCccccccccccccccccCCCccc
Q 020985 197 -GINGC--------------------SLKTAENL----DVVRGIPIERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKK 250 (319)
Q Consensus 197 -s~sg~--------------------~~~~~~~~----~~l~~ip~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~ 250 (319)
.+++. -+++++.+ +.++.--+| ++.||. |+..-.+. .+ .
T Consensus 315 ~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id--~i~sDHap~~~~~K~----------~~---~ 379 (505)
T PLN02795 315 VETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDID--MLSSDHSPSPPDLKL----------LE---E 379 (505)
T ss_pred EEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCce--EEecCCCCCChHHhc----------cC---c
Confidence 22210 02333333 444443455 888994 55210000 00 0
Q ss_pred ccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 251 EKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 251 ~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
..|.. .+..-......++.++..+. -.+++ .+++.+.+..|..++|++.
T Consensus 380 ~~~~~-a~~G~~gle~~l~~~~~~~~-~~~l~-l~~~v~~~s~~pA~~~gl~ 428 (505)
T PLN02795 380 GNFLR-AWGGISSLQFVLPATWTAGR-AYGLT-LEQLARWWSERPAKLAGLD 428 (505)
T ss_pred CCHhh-CCCCceeHHHHHHHHHHHHH-HcCCC-HHHHHHHHHHHHHHHhCCC
Confidence 00100 01111233345666665543 34699 9999999999999999984
No 59
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=97.92 E-value=0.0027 Score=60.41 Aligned_cols=249 Identities=16% Similarity=0.149 Sum_probs=126.3
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcCCeEEeeecCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDGRLFCTVGVHP 78 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~~i~~~~GiHP 78 (319)
-+||.|+|+..+.+. .+.+++..--+++..-|+..++.+.. +.+.+....+.+++ +.+.=+|+|-
T Consensus 6 G~iD~HvH~r~pg~~-------~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~--~~~~d~~~~~ 76 (337)
T cd01302 6 GFIDIHVHLRDPGGT-------TYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEE--SSYVDFSFHA 76 (337)
T ss_pred CeeEeeeccCCCCCC-------CchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCc--CcEeeEEEEE
Confidence 479999999764321 01257777778888899999988752 22333333343332 2233334432
Q ss_pred CCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchH
Q 020985 79 TRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAA 158 (319)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~ 158 (319)
.-... +.++++.++.+. .+.++ .+.+.+..... .......+.+.++.+.++++||++|+.
T Consensus 77 ~~~~~--------~~~~el~~l~~~-----Gv~g~-K~f~~~~~~~~--~~~~~~~l~~~~~~~~~~g~~v~~H~E---- 136 (337)
T cd01302 77 GIGPG--------DVTDELKKLFDA-----GINSL-KVFMNYYFGEL--FDVDDGTLMRTFLEIASRGGPVMVHAE---- 136 (337)
T ss_pred eccCc--------cCHHHHHHHHHc-----CCcEE-EEEEeccCCCc--cccCHHHHHHHHHHHHhcCCeEEEeHH----
Confidence 11110 124455555432 23333 23333211000 011233466667777788999999998
Q ss_pred HHHHHHHhccCCCcceEEEeCCC-CHHHHHHHHHCCCeEeec--cc--------------------cccChhhH----HH
Q 020985 159 DFCAIVERNKDRFTGGVTHSFTG-SAEDRDKLLTFNMYIGIN--GC--------------------SLKTAENL----DV 211 (319)
Q Consensus 159 ~~l~il~~~~~~~~~~i~H~f~g-~~~~~~~~l~~g~y~s~s--g~--------------------~~~~~~~~----~~ 211 (319)
+.+.+.++.+. +-.+.|.-+. +.+.++++-+.|+.++.. +. -+++.+.+ +.
T Consensus 137 r~~~la~~~g~--~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~ 214 (337)
T cd01302 137 RAAQLAEEAGA--NVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEG 214 (337)
T ss_pred HHHHHHHHhCC--cEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHH
Confidence 56666666542 2235675432 345556555566444211 11 02332322 33
Q ss_pred HhcCCCCCEEEcCCC-CCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHH
Q 020985 212 VRGIPIERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRT 290 (319)
Q Consensus 212 l~~ip~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~ 290 (319)
++.--+ -.+.||. |+....+ ..+ +.|.. .+.........+...++.+.+ .+++ .+++.+.
T Consensus 215 l~~G~i--d~i~sDh~p~~~~~k-~~~-------------~~~~~-a~~G~~g~e~~l~~~~~~~~~-~~i~-~~~~~~~ 275 (337)
T cd01302 215 VKNGKI--DTIASDHAPHSKEEK-ESG-------------KDIWK-APPGFPGLETRLPILLTEGVK-RGLS-LETLVEI 275 (337)
T ss_pred HhCCCC--CEEecCCCCCCHHHh-ccC-------------CCccc-CCCCcccHHHHHHHHHHHHHh-cCCC-HHHHHHH
Confidence 332122 2888985 3410000 000 00000 011112222344555554443 4799 9999999
Q ss_pred HHHHHHHhcCCCC
Q 020985 291 LYHNTCRVFFPQD 303 (319)
Q Consensus 291 ~~~N~~rlf~~~~ 303 (319)
+..|..++|++.+
T Consensus 276 ~s~~pA~~~gl~~ 288 (337)
T cd01302 276 LSENPARIFGLYP 288 (337)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999853
No 60
>PRK10027 cryptic adenine deaminase; Provisional
Probab=97.92 E-value=0.0026 Score=64.91 Aligned_cols=238 Identities=14% Similarity=0.095 Sum_probs=143.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC------CCHHhHHHHHHHHHhcCC-eEEee-ec
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG------GSLEESKEALAIAETDGR-LFCTV-GV 76 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~------~~~~~~~~~~~l~~~~~~-i~~~~-Gi 76 (319)
-+||+|+|+.... ...+++.+.+...|+..++... ...+..+..++.++..|- +++.+ ..
T Consensus 85 GlIDaHvHiess~------------~~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~ 152 (588)
T PRK10027 85 GFIDAHLHIESSM------------MTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSC 152 (588)
T ss_pred CeEeccccCCccc------------CCHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeeccc
Confidence 5899999998642 2345566667778988776632 234555666666666553 33322 22
Q ss_pred CCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc
Q 020985 77 HPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA 156 (319)
Q Consensus 77 HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a 156 (319)
-|.-. .+ +..+-.=..+++.+++. +++++++||+ +||... .....+++.... .| .+++|-=|+...
T Consensus 153 vpa~~-~~-Et~Ga~~~~~~~~~~l~----~~~v~glgEv-Mn~~~V----~~~d~~~~~ki~-~~--~~~~idGH~p~l 218 (588)
T PRK10027 153 VPALE-GC-DVNGASFTLEQMLAWRD----HPQVTGLAEM-MDYPGV----ISGQNALLDKLD-AF--RHLTLDGHCPGL 218 (588)
T ss_pred CcCCc-cc-ccCCCcCCHHHHHHHhc----CCCceeEEec-cCcccc----ccCCHHHHHHHH-Hh--CCCceECCCCCC
Confidence 23211 01 00000012345556554 6899999995 454321 223445566655 33 799999999877
Q ss_pred hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccc-cC-hhhHHHHhcCCCCCEEEcCCCCCcccccc
Q 020985 157 AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSL-KT-AENLDVVRGIPIERMMIETDSPYCEIKNA 234 (319)
Q Consensus 157 ~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~-~~-~~~~~~l~~ip~drlLlETD~P~~~~~~~ 234 (319)
.++-|......+.. --|-. -+.+++.+=+++|.|+-+-.... ++ +.+..++.....+|++|=||.-. |..
T Consensus 219 ~g~~L~ay~aaGi~----sDHE~-~t~eea~eklr~Gm~v~iRegS~~~nl~~l~~~~~~~~~~~~~l~TDd~~--~~~- 290 (588)
T PRK10027 219 GGKELNAYIAAGIE----NCHES-YQLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNSPQCMLCTDDRN--PWE- 290 (588)
T ss_pred ChHHHHHHHHcCCC----CCccc-CCHHHHHHHHHCCCEEEEeCCccccCHHHHHHHhhccCCCeEEEEcCCCC--hHH-
Confidence 66555433333321 22422 26788888899999998754322 22 11223444445589999999743 110
Q ss_pred ccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCC
Q 020985 235 HAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDL 304 (319)
Q Consensus 235 ~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~~~ 304 (319)
| ..+ ..+...++.+.+..|++ +++..+....|..+.|++..+
T Consensus 291 ----------l--~~~---------------Ghi~~~vr~av~~~Gi~-~~~Ai~mAT~nPA~~lgl~d~ 332 (588)
T PRK10027 291 ----------I--AHE---------------GHIDALIRRLIEQHNVP-LHVAYRVASWSTARHFGLNHL 332 (588)
T ss_pred ----------H--Hhc---------------cCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCCC
Confidence 1 011 26778888877777999 999999999999999998643
No 61
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=97.92 E-value=0.0012 Score=62.99 Aligned_cols=119 Identities=18% Similarity=0.103 Sum_probs=65.3
Q ss_pred EeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHH-HHHHHHhcC---CeEEeeec
Q 020985 7 IDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKE-ALAIAETDG---RLFCTVGV 76 (319)
Q Consensus 7 iD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~-~~~l~~~~~---~i~~~~Gi 76 (319)
-|.||||-.+. -++.++-- -..||+.++.+.. +.+.+.. ..+.++.++ ++....|+
T Consensus 8 ~~~~~~~~~~~-------------~~~~~~~~-~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v 73 (341)
T TIGR00856 8 DDWHLHLRDGA-------------MLKAVLPY-TSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTL 73 (341)
T ss_pred cceeeeccCch-------------HHHHHHHH-HHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEE
Confidence 48899997642 23344443 4457999999852 2222222 223344554 35677889
Q ss_pred CCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCC-CHHH-HHHHHHHHHHHHHcCCCcEEEEec
Q 020985 77 HPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFC-PSEI-QRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 77 HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~-~~~~-Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
||+... .+++++++++. ..+.++ .+-..+. .+. .... -...+.+.++.|+++|+||++|+.
T Consensus 74 ~~~~~~----------~~~Ei~~l~~~----~Gv~g~-Klf~~~~--~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaE 136 (341)
T TIGR00856 74 YLTDSL----------TPEELERAKNE----GVVRAV-KLYPAGA--TTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGE 136 (341)
T ss_pred ECCCCC----------CHHHHHHHHHc----CCeEEE-EEccCCc--ccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeec
Confidence 986432 23566665541 123333 2111100 000 0001 124577788999999999999998
Q ss_pred cc
Q 020985 155 EA 156 (319)
Q Consensus 155 ~a 156 (319)
+.
T Consensus 137 d~ 138 (341)
T TIGR00856 137 VT 138 (341)
T ss_pred CC
Confidence 65
No 62
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=97.91 E-value=0.0048 Score=58.16 Aligned_cols=125 Identities=16% Similarity=0.205 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEecc--chHHHHHHHHhccCCCcceEEEeCCC--CHHHHHHHHHCCCeEeecccc-c--c-
Q 020985 133 KYFEKQFELAYATKLPMFLHMRE--AAADFCAIVERNKDRFTGGVTHSFTG--SAEDRDKLLTFNMYIGINGCS-L--K- 204 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~--a~~~~l~il~~~~~~~~~~i~H~f~g--~~~~~~~~l~~g~y~s~sg~~-~--~- 204 (319)
+.|...++.|+++|+||.+|+.. ....+.+.++..+. ..+.||+.- +.+.++.+.+.|+.+++.+.. + .
T Consensus 173 ~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~---~~i~H~~~l~~~~~~~~~l~~~gi~v~~~P~sn~~l~~ 249 (325)
T cd01320 173 EKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGA---ERIGHGIRAIEDPELVKRLAERNIPLEVCPTSNVQTGA 249 (325)
T ss_pred HHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCC---cccchhhccCccHHHHHHHHHcCCeEEECCCccccccc
Confidence 45888999999999999999974 34566666765653 347898876 466888888999999887642 1 1
Q ss_pred -----ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhc
Q 020985 205 -----TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCK 279 (319)
Q Consensus 205 -----~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~ 279 (319)
....+++++. -=++.+.||.|-. .+ ..+...+..+++..
T Consensus 250 ~~~~~~~p~~~l~~~--Gv~v~lgTD~~~~--------------------------------~~--~~~~~e~~~~~~~~ 293 (325)
T cd01320 250 VKSLAEHPLRELLDA--GVKVTINTDDPTV--------------------------------FG--TYLTDEYELLAEAF 293 (325)
T ss_pred cCCcccChHHHHHHC--CCEEEECCCCCcc--------------------------------cC--CCHHHHHHHHHHHc
Confidence 1224555554 2258999998751 01 24566777777777
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 020985 280 GINDIDQLSRTLYHNTCRV 298 (319)
Q Consensus 280 ~is~~e~~~~~~~~N~~rl 298 (319)
|++ .+++.+.+ .|+.+.
T Consensus 294 ~l~-~~el~~~~-~na~~~ 310 (325)
T cd01320 294 GLT-EEELKKLA-RNAVEA 310 (325)
T ss_pred CCC-HHHHHHHH-HHHHHH
Confidence 999 99987755 666654
No 63
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=97.87 E-value=0.0057 Score=58.72 Aligned_cols=132 Identities=10% Similarity=0.017 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCCcEEEEeccch-HHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc---cc--Chh
Q 020985 134 YFEKQFELAYATKLPMFLHMREAA-ADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS---LK--TAE 207 (319)
Q Consensus 134 vf~~qlelA~~~~~Pv~iH~r~a~-~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~---~~--~~~ 207 (319)
.|.+.+++|+++|+||.+|+-... ...++.+.+.+. ..+-||..-+.+.++++.+.|..+++.+.. +. ...
T Consensus 198 ~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~---~~~~H~~~~~~~~l~~la~~g~~~~~~P~~~~~l~~~~~p 274 (377)
T TIGR01224 198 QSRRILQAAQEAGLPVKLHAEELSNLGGAELAAKLGA---VSADHLEHASDAGIKALAEAGTVAVLLPGTTFYLRETYPP 274 (377)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCCCHHHHHHHcCC---CccHHHhcCCHHHHHHHHhcCCEEEECchHHHhcCCcCcc
Confidence 488899999999999999995321 112334444332 235598888999999999999999887652 11 122
Q ss_pred hHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHH
Q 020985 208 NLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQL 287 (319)
Q Consensus 208 ~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~ 287 (319)
.+++++. + =++.+.||++.. ..+ -..+...+...+...+++ .+++
T Consensus 275 ~~~l~~~-G-v~v~lgTD~~~~-~~~-------------------------------~~~~~~~~~~~~~~~~ls-~~ea 319 (377)
T TIGR01224 275 ARQLIDY-G-VPVALATDLNPG-SSP-------------------------------TLSMQLIMSLACRLMKMT-PEEA 319 (377)
T ss_pred HHHHHHC-C-CCEEEECCCCCC-CCh-------------------------------hHHHHHHHHHHHHhcCCC-HHHH
Confidence 3455553 2 368999996310 000 013444444445556899 9999
Q ss_pred HHHHHHHHHHhcCCCC
Q 020985 288 SRTLYHNTCRVFFPQD 303 (319)
Q Consensus 288 ~~~~~~N~~rlf~~~~ 303 (319)
.+..+.|..+.+++..
T Consensus 320 l~~~T~~~A~~lg~~~ 335 (377)
T TIGR01224 320 LHAATVNAAYALGLGE 335 (377)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999988753
No 64
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=97.80 E-value=0.01 Score=58.53 Aligned_cols=93 Identities=18% Similarity=0.067 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHH-----------HHHHhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFC-----------AIVERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l-----------~il~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.++...++|+++|+||.+|.-....+.. +.+.+.+.-.++ .+.||...+.+.++.+-+.|..++.++
T Consensus 205 ~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~~P 284 (442)
T PRK07203 205 ATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVHNP 284 (442)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEECc
Confidence 56888999999999999999987655443 344444322233 356999999999999999999998887
Q ss_pred cc-cc----ChhhHHHHhcCCCCCEEEcCCCC
Q 020985 201 CS-LK----TAENLDVVRGIPIERMMIETDSP 227 (319)
Q Consensus 201 ~~-~~----~~~~~~~l~~ip~drlLlETD~P 227 (319)
.. ++ .....++++. + =++-++||+.
T Consensus 285 ~sn~~l~~g~~p~~~~~~~-G-v~v~lGtD~~ 314 (442)
T PRK07203 285 ESNMGNAVGYNPVLEMIKN-G-ILLGLGTDGY 314 (442)
T ss_pred hhhhhcccCCCCHHHHHHC-C-CeEEEcCCCC
Confidence 52 11 1223566554 2 2489999975
No 65
>PRK09061 D-glutamate deacylase; Validated
Probab=97.77 E-value=0.0028 Score=63.74 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccch-----------HHH
Q 020985 92 KHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAA-----------ADF 160 (319)
Q Consensus 92 ~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~-----------~~~ 160 (319)
+.++++.+++++.++. .+.+++ +|++|.. . . ....+.+.++.|+++|.|+.+|+++.. .++
T Consensus 166 ~el~~m~~ll~~al~~-Ga~gis-~~~~y~p-~-~----~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~ 237 (509)
T PRK09061 166 AELAEILELLEQGLDE-GALGIG-IGAGYAP-G-T----GHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQEL 237 (509)
T ss_pred HHHHHHHHHHHHHHHC-CCCEEe-cCCccCC-C-C----CHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHH
Confidence 5677777777643333 345553 2466542 1 1 234588889999999999999999631 444
Q ss_pred HHHHHhccCCCcceEEEeCC
Q 020985 161 CAIVERNKDRFTGGVTHSFT 180 (319)
Q Consensus 161 l~il~~~~~~~~~~i~H~f~ 180 (319)
+++.++.+. +--+.|.-+
T Consensus 238 i~lA~~~G~--rv~IsHlss 255 (509)
T PRK09061 238 IAAAAETGA--HMHICHVNS 255 (509)
T ss_pred HHHHHHhCC--CEEEEeecc
Confidence 566655542 223457654
No 66
>PRK07572 cytosine deaminase; Validated
Probab=97.77 E-value=0.0035 Score=61.54 Aligned_cols=94 Identities=11% Similarity=-0.012 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccch-------HHHHHHHHhccCCCcceEEEeCCCC-------HHHHHHHHHCCCeEe
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAA-------ADFCAIVERNKDRFTGGVTHSFTGS-------AEDRDKLLTFNMYIG 197 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~-------~~~l~il~~~~~~~~~~i~H~f~g~-------~~~~~~~l~~g~y~s 197 (319)
.+.++..+++|+++|+||.+|+-... ..+.+.+.+.+......+.||..-+ .+.++.+.+.|.+++
T Consensus 190 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~G~~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv 269 (426)
T PRK07572 190 AESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAETQRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAI 269 (426)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHHHHhCCCCCEEEEccchhhcCCHHHHHHHHHHHHHcCCeEE
Confidence 46799999999999999999995432 2233444455543222346986533 356777778899988
Q ss_pred ecccc-c--c---------C--hhhHHHHhcCCCCCEEEcCCCC
Q 020985 198 INGCS-L--K---------T--AENLDVVRGIPIERMMIETDSP 227 (319)
Q Consensus 198 ~sg~~-~--~---------~--~~~~~~l~~ip~drlLlETD~P 227 (319)
.++.. + . + ...+++++. + =++.+.||.+
T Consensus 270 ~~P~~n~~l~~~~~~~~~~~g~~~v~~l~~~-G-V~v~lGtD~~ 311 (426)
T PRK07572 270 ANPLINITLQGRHDTYPKRRGMTRVPELMAA-G-INVAFGHDCV 311 (426)
T ss_pred ECchhhhhhcCCCCCCCCCCCCcCHHHHHHC-C-CcEEEecCCC
Confidence 76642 1 0 0 113455554 2 2589999985
No 67
>PRK06846 putative deaminase; Validated
Probab=97.76 E-value=0.013 Score=57.07 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccch-------HHHHHHHHhccCCCcceEEEeCC---CCHHHHH----HHHHCCCeEe
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAA-------ADFCAIVERNKDRFTGGVTHSFT---GSAEDRD----KLLTFNMYIG 197 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~-------~~~l~il~~~~~~~~~~i~H~f~---g~~~~~~----~~l~~g~y~s 197 (319)
.+.|+..+++|+++|+|+.+|..... ..+++++.+.+......+.||.. .+.+.+. .+.+.|..++
T Consensus 205 ~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~ 284 (410)
T PRK06846 205 EKSLDTMFQIAVDFNKGVDIHLHDTGPLGVATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGISIT 284 (410)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCChhHHHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeEE
Confidence 47799999999999999999997532 45567777765433233568864 2556654 4556698776
Q ss_pred ecccccc-ChhhHHHHhcCCCCCEEEcCCCCC
Q 020985 198 INGCSLK-TAENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 198 ~sg~~~~-~~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.+....+ -...+++.+. -=++-+.||+|.
T Consensus 285 ~~~~~~~g~~p~~~l~~~--Gv~v~lGtD~~~ 314 (410)
T PRK06846 285 STVPIGRLHMPIPLLHDK--GVKVSLGTDSVI 314 (410)
T ss_pred EeCCCCCCCCCHHHHHhC--CCeEEEecCCCC
Confidence 5432111 1223455554 236899999874
No 68
>PRK08417 dihydroorotase; Provisional
Probab=97.74 E-value=0.003 Score=61.28 Aligned_cols=115 Identities=12% Similarity=0.219 Sum_probs=66.1
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CH-----HhHHHHHHHHHhcCC-eEEeeecC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SL-----EESKEALAIAETDGR-LFCTVGVH 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~-----~~~~~~~~l~~~~~~-i~~~~GiH 77 (319)
-+||.|+|+....+. ..+.+...+.+...||..++.++. .| +.++...+.++..+. ++...++-
T Consensus 31 G~ID~HvH~~~~~~~---------~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (386)
T PRK08417 31 ALVDLNVSLKNDSLS---------SKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRAL 101 (386)
T ss_pred CeeEEeeeeCCCCcC---------hhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEE
Confidence 589999999754321 146667778888889999888753 23 344444444443222 22222211
Q ss_pred CCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 78 PTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 78 P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
.. .+.++++.++.+. .+.++ .+ ++ . .....|.+.++.|+++|+||++|+.+
T Consensus 102 -----~~------~~~~~~i~~l~~~-----Gv~~~-k~--~~-~-------~~~~~l~~~~~~a~~~g~~V~~HaEd 152 (386)
T PRK08417 102 -----DE------DGKLSNIATLLKK-----GAKAL-EL--SS-D-------LDANLLKVIAQYAKMLDVPIFCRCED 152 (386)
T ss_pred -----CC------CccHHHHHHHHHC-----CCEEE-EC--CC-C-------CCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 00 0235566665432 22232 11 11 0 12345888889999999999999965
No 69
>PRK08418 chlorohydrolase; Provisional
Probab=97.71 E-value=0.0075 Score=58.93 Aligned_cols=94 Identities=21% Similarity=0.107 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHH---------------------------HHHHHhccCCCcceEEEeCCCCHH
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADF---------------------------CAIVERNKDRFTGGVTHSFTGSAE 184 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~---------------------------l~il~~~~~~~~~~i~H~f~g~~~ 184 (319)
.+.|++..++|+++++|+.+|.-....+. ++.+...+. ....+.||-.-+.+
T Consensus 189 ~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g~-~~~~~~H~~~~~~~ 267 (408)
T PRK08418 189 PILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFKG-LRTLFTHCVYASEE 267 (408)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhCC-CCeEEEecccCCHH
Confidence 35799999999999999999998754443 233443331 22456799888999
Q ss_pred HHHHHHHCCCeEeecccc-c--c--ChhhHHHHhcCCCCCEEEcCCCCC
Q 020985 185 DRDKLLTFNMYIGINGCS-L--K--TAENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 185 ~~~~~l~~g~y~s~sg~~-~--~--~~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.++.+.+.|..++..+.. + . ...++++++. -=++-++||++-
T Consensus 268 di~~la~~g~~v~~cP~sn~~lg~g~~p~~~~~~~--Gi~v~lGtD~~~ 314 (408)
T PRK08418 268 ELEKIKSKNASITHCPFSNRLLSNKALDLEKAKKA--GINYSIATDGLS 314 (408)
T ss_pred HHHHHHHcCCcEEECHhHHHHhcCCCccHHHHHhC--CCeEEEeCCCCC
Confidence 999999999999887752 1 1 1223455554 346899999753
No 70
>PRK06886 hypothetical protein; Validated
Probab=97.69 E-value=0.02 Score=54.46 Aligned_cols=218 Identities=14% Similarity=0.023 Sum_probs=118.0
Q ss_pred HHHHHHHcCCCEEEE---e--CCCHHhHHHHHHHHHhcCC-e---EEeeecCCCCcccccccCCCHHHHHHHHHHHHhcc
Q 020985 35 VLSRAWSSGVDRIIV---T--GGSLEESKEALAIAETDGR-L---FCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGI 105 (319)
Q Consensus 35 vl~~~~~~Gv~~~v~---~--~~~~~~~~~~~~l~~~~~~-i---~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~ 105 (319)
.++.+-..|+..+=+ + ...+..|+.+.++.+++.. + +.++ |..--. .. ..+++++ +-++
T Consensus 74 ~l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~~~idlq~vaf---Pq~g~~-~~--~~~~l~~---~al~--- 141 (329)
T PRK06886 74 AIELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKHDIILKFANQ---TLKGVI-EP--TAKKWFD---IGSE--- 141 (329)
T ss_pred HHHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhcCcceEEEEec---Chhhcc-Cc--cHHHHHH---HHHH---
Confidence 444555567654422 1 1245678888888888854 2 2233 432111 11 0112232 2221
Q ss_pred CCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc---hHHHHHHHH----hccCCCcceEEEe
Q 020985 106 EKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA---AADFCAIVE----RNKDRFTGGVTHS 178 (319)
Q Consensus 106 ~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a---~~~~l~il~----~~~~~~~~~i~H~ 178 (319)
. +-.|| |+++.- ..+...-.+-+...+++|+++|+||-+|+-.. ....++.+. +.+....-.+.||
T Consensus 142 -~--advvG--GiP~~~--~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~l~~~~~~~Gl~grV~~sH~ 214 (329)
T PRK06886 142 -M--VDMIG--GLPYRD--ELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKEKETEQLCDKTIEHGMQGRVVAIHG 214 (329)
T ss_pred -h--CCEEe--CccCCc--CCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhHHHHHHHHHHHHHcCCCCCEEEEEe
Confidence 1 23555 556541 01122334568888999999999999999753 223344333 4443322335699
Q ss_pred CCCCHH-------HHHHHHHCCCeEeecccc-c-----------cC--hhhHHHHhcCCCCCEEEcCCCCCccccccccc
Q 020985 179 FTGSAE-------DRDKLLTFNMYIGINGCS-L-----------KT--AENLDVVRGIPIERMMIETDSPYCEIKNAHAG 237 (319)
Q Consensus 179 f~g~~~-------~~~~~l~~g~y~s~sg~~-~-----------~~--~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~ 237 (319)
++-+.. .++.+.+.|+.+..++.. + .. ..+.++.+. -=++-++||.... |
T Consensus 215 ~~L~~~~~~~~~~~i~~La~agi~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~a--GV~V~lGtDnv~D---~---- 285 (329)
T PRK06886 215 ISIGAHSKEYRYRLYQKMREADMMVIACPMAWIDSNRKEDLMPFHNALTPADEMIPE--GITVALGTDNICD---Y---- 285 (329)
T ss_pred ccccCcChhhHHHHHHHHHHcCCeEEECchhhhhhccccccCcCCCCCCCHHHHHHC--CCeEEEecCCCcc---c----
Confidence 875532 356666679888876642 1 00 123455554 2358999998531 0
Q ss_pred cccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 238 ISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 238 ~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
|. | +-..++...+..++.+-++.+.+++.+..+.|..+.+++.
T Consensus 286 -------~~-p--------------~g~~Dmle~~~l~~~~~~~~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 286 -------MV-P--------------LCEGDMWQELSLLAAGCRFYDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred -------CC-C--------------CCCCCHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCC
Confidence 10 0 1112455555555555443228889999999999988864
No 71
>PRK05985 cytosine deaminase; Provisional
Probab=97.69 E-value=0.004 Score=60.31 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccch----HHH---HHHHHhccCCCcceEEEeCCC---CH----HHHHHHHHCCCeEee
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAA----ADF---CAIVERNKDRFTGGVTHSFTG---SA----EDRDKLLTFNMYIGI 198 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~----~~~---l~il~~~~~~~~~~i~H~f~g---~~----~~~~~~l~~g~y~s~ 198 (319)
+.+...+++|+++|+|+.+|+.... ..+ ++...+.+......+-|+..- +. +.++.+.+.|+.++.
T Consensus 191 ~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~ 270 (391)
T PRK05985 191 GQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMT 270 (391)
T ss_pred HHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEE
Confidence 6688889999999999999987532 233 333334432211345587542 23 335666678988877
Q ss_pred cccccc-ChhhHHHHhcCCCCCEEEcCCCCC
Q 020985 199 NGCSLK-TAENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 199 sg~~~~-~~~~~~~l~~ip~drlLlETD~P~ 228 (319)
++.... -...+++++. -=++.+.||++.
T Consensus 271 ~~~~~~~~~~~~~l~~~--Gv~v~lGtD~~~ 299 (391)
T PRK05985 271 NAPGSVPVPPVAALRAA--GVTVFGGNDGIR 299 (391)
T ss_pred eCCCCCCCCCHHHHHHC--CCeEEEecCCCC
Confidence 643211 1224566665 237999999863
No 72
>PRK09358 adenosine deaminase; Provisional
Probab=97.66 E-value=0.018 Score=54.74 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc--hHHHHHHHHhccCCCcceEEEeCCC--CHHHHHHHHHCCCeEeecccc---ccC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA--AADFCAIVERNKDRFTGGVTHSFTG--SAEDRDKLLTFNMYIGINGCS---LKT 205 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a--~~~~l~il~~~~~~~~~~i~H~f~g--~~~~~~~~l~~g~y~s~sg~~---~~~ 205 (319)
+.|...+++|+++|+|+.+|+... ...+.+.+...+. ..+-||..- +.+.++.+.+.|+.+++.+.. +..
T Consensus 182 ~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~---~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~ 258 (340)
T PRK09358 182 SKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGA---ERIGHGVRAIEDPALMARLADRRIPLEVCPTSNVQTGA 258 (340)
T ss_pred HHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCC---cccchhhhhccCHHHHHHHHHcCCeEEECCCccccccc
Confidence 458889999999999999999853 3456666665553 347898765 466788888899999887752 111
Q ss_pred ------hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhc
Q 020985 206 ------AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCK 279 (319)
Q Consensus 206 ------~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~ 279 (319)
...+++++. + =++-+.||.|... + .++..-+..+++..
T Consensus 259 ~~~~~~~pi~~l~~~-G-v~v~lgTD~~~~~--------------------------------~--~~l~~e~~~~~~~~ 302 (340)
T PRK09358 259 VPSLAEHPLKTLLDA-G-VRVTINTDDPLVF--------------------------------G--TTLTEEYEALAEAF 302 (340)
T ss_pred cCCcccChHHHHHHC-C-CEEEECCCCCccc--------------------------------C--CCHHHHHHHHHHHh
Confidence 123456654 1 2589999998520 1 25667777888878
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 020985 280 GINDIDQLSRTLYHNTCRV 298 (319)
Q Consensus 280 ~is~~e~~~~~~~~N~~rl 298 (319)
|++ .+++.+++ .|+.+.
T Consensus 303 ~l~-~~el~~l~-~nai~~ 319 (340)
T PRK09358 303 GLS-DEDLAQLA-RNALEA 319 (340)
T ss_pred CCC-HHHHHHHH-HHHHHH
Confidence 999 99986665 665554
No 73
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.0057 Score=61.26 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=147.1
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHh---------HHHHHHHHHhcC-CeEEee
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEE---------SKEALAIAETDG-RLFCTV 74 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~---------~~~~~~l~~~~~-~i~~~~ 74 (319)
-+||+|.|.-+..+ ++.+..+..-..|+..+|+ +|.+ .++.++-+++.| ++|..+
T Consensus 78 GfID~H~HIESSm~------------tP~~FA~~Vlp~GtTtvV~---DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~ 142 (584)
T COG1001 78 GFIDAHLHIESSML------------TPSEFARAVLPHGTTTVVS---DPHEIANVLGEDGIRFMLDEAKETPLKVYVML 142 (584)
T ss_pred ceeecceecccccc------------CHHHHHHHhhccCceEEee---CcHHHHhhccHHHHHHHHHHHhhCCeEEEEec
Confidence 58999999876533 4556666666778876543 3433 445555666666 344322
Q ss_pred ecCCCCcccc-cccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 75 GVHPTRCKEF-EESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 75 GiHP~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
|.+++.. .+..+-+=..+.+.++++ +++++++||. .+|-.. .+.+ +..-.-++.|++.++||-=|+
T Consensus 143 ---pScVPat~~Et~Ga~l~a~~i~e~~~----~p~Vigl~E~-Mn~pgV----i~~D-~~~l~kl~a~~~~~k~VdGHa 209 (584)
T COG1001 143 ---PSCVPATPFETSGAELTAEDIKELLE----HPEVIGLGEM-MNFPGV----IEGD-PDMLAKLEAARKAGKPVDGHA 209 (584)
T ss_pred ---ccCccCCccccCCceecHHHHHHHhh----CCCccchhhh-cCCchh----ccCC-HHHHHHHHHHHHcCCeecccC
Confidence 2222211 110111113356666665 7999999996 454211 1222 234456899999999999999
Q ss_pred ccchHHHHHHHHhccCCCcceEEE-eCCCCHHHHHHHHHCCCeEeec-cccccCh-hhHHHHhcCCCCCEEEcCCCCCcc
Q 020985 154 REAAADFCAIVERNKDRFTGGVTH-SFTGSAEDRDKLLTFNMYIGIN-GCSLKTA-ENLDVVRGIPIERMMIETDSPYCE 230 (319)
Q Consensus 154 r~a~~~~l~il~~~~~~~~~~i~H-~f~g~~~~~~~~l~~g~y~s~s-g~~~~~~-~~~~~l~~ip~drlLlETD~P~~~ 230 (319)
+...+..+.-....+.. --| |+ +.|++.+=+++|.|+.+- |..-++- .+..++...+..|+++=||--.
T Consensus 210 pgl~g~~Ln~Y~aaGi~----tDHE~~--t~EEa~~klr~Gm~i~iReGS~a~dl~~l~~~i~e~~~~~~~lcTDD~~-- 281 (584)
T COG1001 210 PGLSGKELNAYIAAGIS----TDHEST--TAEEALEKLRLGMKIMIREGSAAKDLAALLPAITELGSRRVMLCTDDRH-- 281 (584)
T ss_pred CCCChHHHHHHHhcCCC----cCcccC--CHHHHHHHHhCCcEEEEEcCchhhhHHHHHHHHhhcCCceEEEECCCCC--
Confidence 98766555433333321 235 43 678888889999999986 4322221 2346778888899999999754
Q ss_pred ccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCCCc
Q 020985 231 IKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLDS 306 (319)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~~~~~ 306 (319)
+++ | -.+ .++-++++..-+ .|++ +.+..+...-|+.+.|++..+=.
T Consensus 282 -----p~d------l--~~e---------------Ghld~~vR~Ai~-~Gv~-p~~a~qmAtiN~A~~~gl~~~G~ 327 (584)
T COG1001 282 -----PDD------L--LEE---------------GHLDRLVRRAIE-EGVD-PLDAYQMATINPAEHYGLDDLGL 327 (584)
T ss_pred -----hhH------h--hhc---------------CCHHHHHHHHHH-cCCC-HHHHHHHHhcCHHHHcCCccccc
Confidence 110 1 011 256666665433 4999 99999999999999999986544
No 74
>PRK09357 pyrC dihydroorotase; Validated
Probab=97.58 E-value=0.027 Score=55.03 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=65.8
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CH-----HhHHHHHHHHHhcC--CeEEeeec
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SL-----EESKEALAIAETDG--RLFCTVGV 76 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~-----~~~~~~~~l~~~~~--~i~~~~Gi 76 (319)
-+||+|+|+..... .+..++....+.+...|+..++.+.. .+ +..+...+.+++.. .+++..++
T Consensus 54 G~ID~H~H~~~~~~--------~~~e~~~~~~~~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (423)
T PRK09357 54 GLVDLHVHLREPGQ--------EDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAI 125 (423)
T ss_pred CEEecccccCCCCc--------cccccHHHHHHHHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEE
Confidence 58999999854211 01245655556777889988887652 22 23344444444333 22222222
Q ss_pred CCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 77 HPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 77 HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
...... +.++++.++.. ..+.+++..|+ +. .+ .+.+++.++.|+++|+||++|+.+
T Consensus 126 ~~~~~~---------~~~~~~~~l~~-----~gv~~~~~~~~--~~---~~----~~~l~~~~~~a~~~g~~v~iH~ee 181 (423)
T PRK09357 126 TKGLAG---------EELTEFGALKE-----AGVVAFSDDGI--PV---QD----ARLMRRALEYAKALDLLIAQHCED 181 (423)
T ss_pred EeCCCC---------ccHHHHHHHHh-----CCcEEEECCCc--cc---CC----HHHHHHHHHHHHhcCCEEEEeCCC
Confidence 211100 23445555443 13555553331 10 11 356888899999999999999975
No 75
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=97.58 E-value=0.074 Score=52.66 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHHH-----------HHHhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFCA-----------IVERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~-----------il~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.+++..++| ++|+||.+|+-+...++.. .+.+.+...++ .+.||..-+.+.++.+.+.|..+++.+
T Consensus 216 e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~~~la~~g~~v~~~P 294 (456)
T PRK09229 216 DQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAETARLARSGAVAGLCP 294 (456)
T ss_pred HHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHHHHHHHHcCCeEEECc
Confidence 5688889999 9999999999754444333 33343332233 466999999999999999999999887
Q ss_pred cc-cc----ChhhHHHHhcCCCCCEEEcCCCCC
Q 020985 201 CS-LK----TAENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 201 ~~-~~----~~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.. ++ ....+++++. -=++-+.||++.
T Consensus 295 ~sn~~lg~g~~p~~~l~~~--Gv~v~lGtD~~~ 325 (456)
T PRK09229 295 TTEANLGDGIFPAVDYLAA--GGRFGIGSDSHV 325 (456)
T ss_pred hhhhhhcCCCCCHHHHHHC--CCeEEEecCCCC
Confidence 52 11 1123566654 235999999865
No 76
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=97.56 E-value=0.023 Score=54.94 Aligned_cols=125 Identities=12% Similarity=0.082 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccc-ccc------C
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGC-SLK------T 205 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~-~~~------~ 205 (319)
+.+.+.+++|+++++||..|.-...+.+-+.. +.+. .++-|. -+.++++.+.+.|.++..+.. .++ .
T Consensus 209 e~i~~~v~~A~~~G~~v~sH~~~~~e~i~~a~-~~Gv---~~~E~~--~t~e~a~~~~~~G~~v~~~~p~~~r~~~~~~~ 282 (376)
T TIGR02318 209 ANRSEIAALARARGIPLASHDDDTPEHVAEAH-DLGV---TISEFP--TTLEAAKEARSLGMQILMGAPNIVRGGSHSGN 282 (376)
T ss_pred HHHHHHHHHHHHCCCeEEEecCCCHHHHHHHH-HCCC---ChhccC--CCHHHHHHHHHcCCeEEECCccccccccccch
Confidence 56778899999999999999855555443433 3332 233343 578899999999999776532 222 1
Q ss_pred hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHH
Q 020985 206 AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDID 285 (319)
Q Consensus 206 ~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e 285 (319)
....++++. + -...+.||.... ..+..++.......+++ .+
T Consensus 283 ~~l~~~~~~-G-~~~~l~SD~~p~------------------------------------~~l~~~~~~~~~~~gl~-~~ 323 (376)
T TIGR02318 283 LSARELAHE-G-LLDVLASDYVPA------------------------------------SLLLAAFQLADDVEGIP-LP 323 (376)
T ss_pred HHHHHHHHC-C-CcEEEEcCCCcH------------------------------------HHHHHHHHHHHhhcCCC-HH
Confidence 223455554 2 246999998320 12222232222224889 99
Q ss_pred HHHHHHHHHHHHhcCCC
Q 020985 286 QLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 286 ~~~~~~~~N~~rlf~~~ 302 (319)
++.+.+..|..+.|++.
T Consensus 324 ~al~~~T~npA~~lgl~ 340 (376)
T TIGR02318 324 QAVKMVTKNPARAVGLS 340 (376)
T ss_pred HHHHHHhHHHHHHcCCC
Confidence 99999999999999985
No 77
>PRK02382 dihydroorotase; Provisional
Probab=97.52 E-value=0.0052 Score=60.63 Aligned_cols=124 Identities=20% Similarity=0.225 Sum_probs=71.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcCCeEEeeecCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDGRLFCTVGVHP 78 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~~i~~~~GiHP 78 (319)
-+||.|+|+....+. +..++....+.+...||..++.++. +.+.+....+.+++.. +.-+++|-
T Consensus 55 G~ID~H~H~~~~g~~--------~~e~~~~~~~aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s--~v~~~~~~ 124 (443)
T PRK02382 55 GGIDVHVHFREPGYT--------HKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKS--IVDFGING 124 (443)
T ss_pred CEeeeeeeccCCCCC--------chhhHHHHHHHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCc--eEEEEEEe
Confidence 589999998654221 1245667777888889988887642 2334444444444322 33344442
Q ss_pred CCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc
Q 020985 79 TRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA 156 (319)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a 156 (319)
... ..++++.++.+ . .+.++|++-..++.... ......+.+.++.|+++++||++|+.+.
T Consensus 125 ~~~----------~~~~~l~~l~~----~-gv~~~gkv~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~e~~ 184 (443)
T PRK02382 125 GVT----------GNWDPLESLWE----R-GVFALGEIFMADSTGGM---GIDEELFEEALAEAARLGVLATVHAEDE 184 (443)
T ss_pred eec----------cchhhHHHHHh----c-CccceeEEEEEecCCCc---ccCHHHHHHHHHHHHhcCCeEEEecCCH
Confidence 111 11334444443 2 46677776553321011 1112567888899999999999999764
No 78
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=97.52 E-value=0.025 Score=55.68 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 268 VRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 268 l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
+...+..+.+-.+++ .+++.+.+..|..++|++.
T Consensus 340 ~~~~~~~~~~~~~~~-~~~~~~~~t~~pa~~~g~~ 373 (447)
T cd01315 340 LPVMLTEAVNKRGLS-LEDIARLMCENPAKLFGLS 373 (447)
T ss_pred HHHHHHHHHHcCCCC-HHHHHHHHhHHHHHHhCCC
Confidence 444444444456899 9999999999999999985
No 79
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=97.48 E-value=0.024 Score=55.86 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=63.6
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC-H-HhHHHHHHHHHhc--CCeEEeeecCCCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS-L-EESKEALAIAETD--GRLFCTVGVHPTR 80 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~-~-~~~~~~~~l~~~~--~~i~~~~GiHP~~ 80 (319)
-+||+|+|+.... .+ ..+..+.....+.+...||..++.+... + .+....++...+. ...+.-+|+|...
T Consensus 52 GlID~H~H~~~~~-~~-----~~~~e~~~~~s~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (454)
T TIGR02033 52 GGIDVHTHLEMPF-GG-----TVTADDFFTGTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMI 125 (454)
T ss_pred CEecceeccCccc-CC-----CCCcchHHHHHHHHHhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecc
Confidence 5899999997531 00 0112344444456667899988887533 2 2333333322221 1223445666322
Q ss_pred cccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEec
Q 020985 81 CKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 81 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
.. .. .+.+++..+++.+ ..+..|.. -+.+.... . .-.+.|.+.++.|+++++||.+|+.
T Consensus 126 ~~-~~-----~~~~~~~~~~~~~----~g~~~ik~-~~~~~~~~-~---~~~~~l~~~~~~a~~~~~~v~~H~E 184 (454)
T TIGR02033 126 TH-WN-----DEVLEEHIPELVE----EGITSFKV-FMAYKNLL-M---VDDEELFEILKRAKELGALLQVHAE 184 (454)
T ss_pred cC-Cc-----HHHHHHHHHHHHh----cCCcEEEE-EeecCCCC-C---CCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 11 11 1234443333321 12222321 12211101 1 1235688888999999999999984
No 80
>PRK09230 cytosine deaminase; Provisional
Probab=97.44 E-value=0.017 Score=56.77 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeccc-------hHHHHHHHHhccCCCcce-EEEeCCC-------CHHHHHHHHHCCCe
Q 020985 131 QRKYFEKQFELAYATKLPMFLHMREA-------AADFCAIVERNKDRFTGG-VTHSFTG-------SAEDRDKLLTFNMY 195 (319)
Q Consensus 131 Q~~vf~~qlelA~~~~~Pv~iH~r~a-------~~~~l~il~~~~~~~~~~-i~H~f~g-------~~~~~~~~l~~g~y 195 (319)
-.+.|+..+++|+++|+|+.+|.-.. ...+.+++++.+.. .++ +.||..- +.+.++.+.+.|+.
T Consensus 193 ~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~~~~~gl~-~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~ 271 (426)
T PRK09230 193 GVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREGMG-ARVTASHTTAMHSYNGAYTSRLFRLLKMSGIN 271 (426)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHHHHHhCCC-CCEEEEecCchhcCCHHHHHHHHHHHHHcCCe
Confidence 36779999999999999999999643 23456777777643 344 5588766 46677888888988
Q ss_pred Eeecccc-c--c---------C--hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCC
Q 020985 196 IGINGCS-L--K---------T--AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKG 261 (319)
Q Consensus 196 ~s~sg~~-~--~---------~--~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~ 261 (319)
+...+.. + . + ...+++++. -=++-+.||.+... + .+.+
T Consensus 272 vv~cP~sn~~l~~~~~~~p~~~g~~pi~~l~~a--Gv~V~lGTD~~~d~--------------~-~~~~----------- 323 (426)
T PRK09230 272 FVANPLVNIHLQGRFDTYPKRRGITRVKEMLEA--GINVCFGHDDVFDP--------------W-YPLG----------- 323 (426)
T ss_pred EEECcchhhhhcCCCCCCCCCCCCcCHHHHHHC--CCeEEEecCCCCCC--------------C-cCCC-----------
Confidence 8776542 1 1 0 013466654 23699999986511 1 0000
Q ss_pred CCccchHHHHHHH---HHHhcCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 262 RNEPCLVRQVLEV---VAGCKGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 262 ~n~P~~l~~v~~~---iA~~~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
. .++.+.+.. .+...+.++.+++.+..+.|..+.+|+..
T Consensus 324 ~---~d~~~~~~~~~~~~~~~~~~~~~~~l~maT~~gA~alg~~~ 365 (426)
T PRK09230 324 T---ANMLQVLHMGLHVCQLMGYGQINDGLNLITTHSARTLNLQD 365 (426)
T ss_pred C---CCHHHHHHHHHHHHhhCChhhHHHHHHHHhcchhHHhCCCC
Confidence 0 122222222 23332221156888888899999999754
No 81
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=97.44 E-value=0.055 Score=53.24 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=65.3
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CH-HhHHHHHHHHHhc--CCeEEeeecCCCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SL-EESKEALAIAETD--GRLFCTVGVHPTR 80 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~-~~~~~~~~l~~~~--~~i~~~~GiHP~~ 80 (319)
-+||+|+|+...-.. .....++....+.+...|+..++.+.. .+ .+....++...+. ...+.-+|+|...
T Consensus 52 GlID~H~H~~~~~~~------~~~~e~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 125 (447)
T cd01314 52 GGIDPHTHLELPFMG------TVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMII 125 (447)
T ss_pred CEEeccccccccccC------ccCcchHHHHHHHHHhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEee
Confidence 589999999753110 001234444455666789988887652 33 3444443332221 1222334455332
Q ss_pred cccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEec
Q 020985 81 CKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 81 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
... ..+.++++.++++. + +.+|- +.+........ -.+.+.+.++.|+++++||.+|+.
T Consensus 126 ~~~------~~~~~~~~~~l~~~----g-~~~ik-~~~~~~~~~~~----s~~~l~~~~~~a~~~g~~v~~H~E 183 (447)
T cd01314 126 TDW------TDSVIEELPELVKK----G-ISSFK-VFMAYKGLLMV----DDEELLDVLKRAKELGALVMVHAE 183 (447)
T ss_pred cCC------ChHHHHHHHHHHHc----C-CCEEE-EEeccCCCCCC----CHHHHHHHHHHHHhcCCeEEEEcC
Confidence 111 11345566666542 1 12231 11222111111 134578888999999999999984
No 82
>PRK08323 phenylhydantoinase; Validated
Probab=97.42 E-value=0.053 Score=53.52 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=67.9
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC--HHhHHHHHHHHHhc--CCeEEeeecCCCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS--LEESKEALAIAETD--GRLFCTVGVHPTR 80 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~--~~~~~~~~~l~~~~--~~i~~~~GiHP~~ 80 (319)
-+||+|+|+... +.+ .....+.....+.+...||..++.+... ..+....++...+. .....-+|+|...
T Consensus 50 GlID~H~H~~~~-~~~-----~~~~e~~~~~~~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 123 (459)
T PRK08323 50 GGIDPHTHMEMP-FGG-----TVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMII 123 (459)
T ss_pred cEEeeeeccccc-cCC-----ccccCcHHHHHHHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEe
Confidence 589999999653 110 0112455555566778999988876532 12333333322221 2233445666432
Q ss_pred cccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 81 CKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 81 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
.. . ..+.++++.+++... +.+|. +++.+......+ .+.+.+.++.|+++|+||.+|+..
T Consensus 124 ~~-~-----~~~~~~~~~~~~~~g-----~~~ik-~~~~~~~~~~~s----~~~l~~~~~~a~~~g~~v~~H~e~ 182 (459)
T PRK08323 124 TD-W-----NEVVLDEMPELVEEG-----ITSFK-LFMAYKGALMLD----DDELLRALQRAAELGALPMVHAEN 182 (459)
T ss_pred cC-C-----cHHHHHHHHHHHHcC-----CCEEE-EEEecCCCCCCC----HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 11 1 114466777776531 22332 223321101111 234678889999999999999864
No 83
>PLN02599 dihydroorotase
Probab=97.42 E-value=0.04 Score=53.09 Aligned_cols=146 Identities=15% Similarity=0.085 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccch--------H-----HHHH-HHHhccCCCcce-EEEeCCC-CHHHHHHHHHCCCeE
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAA--------A-----DFCA-IVERNKDRFTGG-VTHSFTG-SAEDRDKLLTFNMYI 196 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~--------~-----~~l~-il~~~~~~~~~~-i~H~f~g-~~~~~~~~l~~g~y~ 196 (319)
..+.+.++.++++|+||++|+.... + ..++ ++.++.. .++ +.|.-++ +.+.++++-+.+++.
T Consensus 136 ~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la~~~g--~kI~i~HiSt~~~ve~v~~ak~~~vta 213 (364)
T PLN02599 136 GKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQKLPQ--LKIVMEHITTMDAVEFVESCGDGNVAA 213 (364)
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHHhccC--CeEEEEecChHHHHHHHHhccCCCEEE
Confidence 5678888999999999999998631 1 1222 3545542 244 4476332 122233222113433
Q ss_pred eeccc----------------------cccChhhHH-HHhcCCCCC--EEEcCCC-CCccccccccccccccccCCCccc
Q 020985 197 GINGC----------------------SLKTAENLD-VVRGIPIER--MMIETDS-PYCEIKNAHAGISFVKSTWPSKKK 250 (319)
Q Consensus 197 s~sg~----------------------~~~~~~~~~-~l~~ip~dr--lLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~ 250 (319)
.+++- .+|+++-++ +.+.+--.. .++.||. |+. +.
T Consensus 214 e~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~-~~------------------ 274 (364)
T PLN02599 214 TVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHP-KR------------------ 274 (364)
T ss_pred EecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCC-hH------------------
Confidence 32210 134444343 334443333 4899995 551 00
Q ss_pred ccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 251 EKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 251 ~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.|-.+..+..--+.|..++.+.+.+.+ .| + .+.+.+.+..|..++||+.
T Consensus 275 ~K~~~~g~~Gi~~~~~~l~~l~~~~~~-~g-~-l~~l~~~~S~npA~~~gL~ 323 (364)
T PLN02599 275 AKEASCGCAGIYSAPVALSLYAKAFEE-AG-A-LDKLEAFTSFNGPDFYGLP 323 (364)
T ss_pred HhcCCCCCCCcccHHHHHHHHHHHHHh-cC-C-HHHHHHHHhHHHHHHhCCC
Confidence 010000000012333345544343333 25 8 9999999999999999984
No 84
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=97.40 E-value=0.062 Score=52.08 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccc-cccC------
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGC-SLKT------ 205 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~-~~~~------ 205 (319)
+.+++.+++|+++|+||..|.-...+.+ +...+.+. .++. |..+.++++.+.+.|.++..+.. .++.
T Consensus 214 e~i~~~v~~A~~~g~~v~sH~~~~~~~i-~~a~~~Gv---~~~e--~~~~~e~~~~~~~~g~~v~~~~p~~~r~~~~~~~ 287 (383)
T PRK15446 214 PNRRAIAALARARGIPLASHDDDTPEHV-AEAHALGV---AIAE--FPTTLEAARAARALGMSVLMGAPNVVRGGSHSGN 287 (383)
T ss_pred HHHHHHHHHHHHCCCceeecCCCCHHHH-HHHHHcCC---ceee--CCCcHHHHHHHHHCCCEEEeCCcccccCCcccch
Confidence 5577899999999999999995444433 43444442 2333 34578888888889988776432 1221
Q ss_pred hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHH
Q 020985 206 AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDID 285 (319)
Q Consensus 206 ~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e 285 (319)
...+++++.- -...+.||.... ..+.. ...++...+++ .+
T Consensus 288 ~~~~~~~~~G--v~~~lgSD~~p~------------------------------------~~~~~-~~~~~~~~gls-~~ 327 (383)
T PRK15446 288 VSALDLAAAG--LLDILSSDYYPA------------------------------------SLLDA-AFRLADDGGLD-LP 327 (383)
T ss_pred HhHHHHHHCC--CcEEEEcCCChh------------------------------------hHHHH-HHHHHHhcCCC-HH
Confidence 1234555552 246899997320 01222 23344556899 99
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 020985 286 QLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 286 ~~~~~~~~N~~rlf~~~~ 303 (319)
++.+....|..+++++..
T Consensus 328 ~al~~~T~npA~~lgl~~ 345 (383)
T PRK15446 328 QAVALVTANPARAAGLDD 345 (383)
T ss_pred HHHHHHhHHHHHHcCCCC
Confidence 999999999999999853
No 85
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=97.40 E-value=0.064 Score=52.37 Aligned_cols=122 Identities=17% Similarity=0.109 Sum_probs=65.0
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-C-H----HhHHHHHHHHHhcC--CeEEeeec
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-S-L----EESKEALAIAETDG--RLFCTVGV 76 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~-~----~~~~~~~~l~~~~~--~i~~~~Gi 76 (319)
-+||.|+|+..... .+..++....+.+...|+..++.+.. . + +......+.++... ++....|+
T Consensus 40 G~ID~H~H~~~~~~--------~~~~~~~~~~~~~~~~GvTtv~~~~~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~ 111 (411)
T TIGR00857 40 GFIDLHVHLRDPGE--------EYKEDIESGSKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGV 111 (411)
T ss_pred CEEEcccCCCCCCC--------ccHhHHHHHHHHHHhCCeEEEEEecCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEE
Confidence 58999999974211 01145666677788899998887642 2 2 22333333333222 23344455
Q ss_pred CCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 77 HPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 77 HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
...... +.++++.++... .+++ |-...+..+ . .-...+.+.++.|+++|+||.+|+.+
T Consensus 112 ~~~~~~---------~~l~e~~~l~~~-----Gv~g-~~f~~~~~~--~----~~~~~l~~~~~~a~~~g~~v~iH~E~ 169 (411)
T TIGR00857 112 TQGNQG---------KELTEAYELKEA-----GAVG-RMFTDDGSE--V----QDILSMRRALEYAAIAGVPIALHAED 169 (411)
T ss_pred ecCCcc---------ccHHHHHHHHHC-----CcEE-EEEEeCCcc--c----CCHHHHHHHHHHHHHcCCEEEEecCC
Confidence 433211 224455554431 2333 111211111 0 11345777889999999999999864
No 86
>PRK06189 allantoinase; Provisional
Probab=97.32 E-value=0.059 Score=53.32 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHcCCCcE-EEEeccchHHHHHHHHhccCCCcce----EEEeCCCCHHHHHHHHHCCCeEeeccccc
Q 020985 129 EIQRKYFEKQFELAYATKLPM-FLHMREAAADFCAIVERNKDRFTGG----VTHSFTGSAEDRDKLLTFNMYIGINGCSL 203 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv-~iH~r~a~~~~l~il~~~~~~~~~~----i~H~f~g~~~~~~~~l~~g~y~s~sg~~~ 203 (319)
..+.....+.+++|++.++|+ +.|.- ..+-++++++.+.....+ ..|+..-+.+.+.. .|.++-+++. +
T Consensus 215 ~~E~~~v~~~l~la~~~g~~~hi~HiS--t~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~---~~~~~~~~Pp-l 288 (451)
T PRK06189 215 VAELEAVQRALLYAQETGCPLHFVHIS--SGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFER---IGAVAKCAPP-L 288 (451)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhC---cCCceEEeCC-C
Confidence 335566788889999999987 44543 334555554433221122 23654444444332 3545555554 4
Q ss_pred cChhh----HHHHhcCCCCCEEEcCCC-CCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHh
Q 020985 204 KTAEN----LDVVRGIPIERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGC 278 (319)
Q Consensus 204 ~~~~~----~~~l~~ip~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~ 278 (319)
++.+. .+.++. -.-..+.||. |+. +. . +..+.|.. .|..-...-..++.++.....-
T Consensus 289 r~~~~~~~L~~~l~~--G~i~~i~sDh~p~~-~~--~------------K~~~~~~~-~~~G~~g~e~~l~~~~~~~~~~ 350 (451)
T PRK06189 289 RSRSQKEELWRGLLA--GEIDMISSDHSPCP-PE--L------------KEGDDFFL-VWGGISGGQSTLLVMLTEGYIE 350 (451)
T ss_pred CChhhHHHHHHHHhC--CCceEEECCCCCCC-HH--H------------cCcCCccc-CCCCceeHHHHHHHHHHHHHhc
Confidence 44332 345544 2345899997 441 10 0 00000100 0000011113444455444344
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCC
Q 020985 279 KGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 279 ~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.+++ .+++.+.+..|..++|++.
T Consensus 351 ~~l~-~~~~~~~~t~npA~~lgl~ 373 (451)
T PRK06189 351 RGIP-LETIARLLATNPAKRFGLP 373 (451)
T ss_pred CCCC-HHHHHHHHhhhHHHHhCCC
Confidence 5689 9999999999999999984
No 87
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=97.29 E-value=0.047 Score=53.83 Aligned_cols=122 Identities=14% Similarity=0.075 Sum_probs=63.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC--CCH-----HhHHHHHHHHHhcCCeEEeeecC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG--GSL-----EESKEALAIAETDGRLFCTVGVH 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~--~~~-----~~~~~~~~l~~~~~~i~~~~GiH 77 (319)
-+||.|+|+...... +..++....+.+...||..++.+. +.+ +.+...++.++... +.-+++|
T Consensus 52 G~ID~H~H~~~~~~~--------~~~~~~~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~--~~d~~~~ 121 (443)
T TIGR03178 52 GVVDTHVHINEPGRT--------EWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKL--AVDVGFW 121 (443)
T ss_pred cEeccccccCCCCcc--------ccchHHHHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCC--ceeEEEE
Confidence 589999999753211 124566666777888999888875 222 23333334433221 1122222
Q ss_pred CCCcccccccCCCHHHHHHHHHHHHhccCCCCE---EEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEec
Q 020985 78 PTRCKEFEESGDPEKHFQALLSLAKEGIEKGKV---VAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 78 P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~---~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
..... +.++++.++.+. +-. +..+.-|.+.+. ......+.+.++.|+++|+|+.+|+.
T Consensus 122 ~~~~~---------~~~~~i~~~~~~----G~~~ik~~~~~~~~~~~~------~~~~~~l~~~~~~a~~~g~~v~~H~E 182 (443)
T TIGR03178 122 GGLVP---------YNLDDLRELDEA----GVVGFKAFLSPSGDDEFP------HVDDWQLYKGMRELARLGQLLLVHAE 182 (443)
T ss_pred eccCC---------CCHHHHHHHHHC----CCcEEEEEecccCCCCcc------cCCHHHHHHHHHHHHhcCCeEEEecc
Confidence 11111 123445555432 211 122222222111 12234577788999999999999976
Q ss_pred c
Q 020985 155 E 155 (319)
Q Consensus 155 ~ 155 (319)
.
T Consensus 183 ~ 183 (443)
T TIGR03178 183 N 183 (443)
T ss_pred C
Confidence 4
No 88
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=97.26 E-value=0.039 Score=54.40 Aligned_cols=93 Identities=16% Similarity=0.015 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHH-----------HHHHHhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADF-----------CAIVERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~-----------l~il~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.++...++|+++++|+.+|.-....+. ++.|.+.+.-.++ .+.||..-+.+.++.+.+.|..++..+
T Consensus 204 ~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~cP 283 (441)
T TIGR03314 204 AGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVHNP 283 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEECH
Confidence 5688889999999999999998765443 3455554432233 456999999999999999999998877
Q ss_pred cc-cc--C--hhhHHHHhcCCCCCEEEcCCCC
Q 020985 201 CS-LK--T--AENLDVVRGIPIERMMIETDSP 227 (319)
Q Consensus 201 ~~-~~--~--~~~~~~l~~ip~drlLlETD~P 227 (319)
.. ++ + ....++++. -=++-++||+.
T Consensus 284 ~sn~~l~~G~~p~~~~~~~--Gv~v~LGtD~~ 313 (441)
T TIGR03314 284 ESNMGNAVGYNPVLRMFKN--GILLGLGTDGY 313 (441)
T ss_pred HHHhhhccCCCCHHHHHHC--CCEEEEcCCCC
Confidence 52 11 1 123456554 34699999974
No 89
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=97.07 E-value=0.12 Score=49.30 Aligned_cols=243 Identities=14% Similarity=0.093 Sum_probs=117.8
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcCCeEEeeecCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDGRLFCTVGVHP 78 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~~i~~~~GiHP 78 (319)
-+||.|+|+..+.+. +.++.+.--++|...||..++.+.. +.+.++...+.+++.. +.=+++|-
T Consensus 7 G~ID~HvH~r~pg~~--------~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s--~vd~~~~~ 76 (344)
T cd01316 7 GLIDVHVHLREPGAT--------HKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKA--RCDYAFSI 76 (344)
T ss_pred CeEEeeeccCCCCcC--------CcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCc--EEeEEEEe
Confidence 479999999764321 1367777778888899999888753 2333444444444322 33344442
Q ss_pred CCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc-h
Q 020985 79 TRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA-A 157 (319)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a-~ 157 (319)
.-.. . ..+++.++... ...+.+.-.-++. . ...+. ...++. ..-+...+.|+.+|.... .
T Consensus 77 ~~~~-~--------~~~~~~~l~~~---~~g~k~f~~~~~~--~---~~~~~-~~~~~~-~~~~~~~~~p~~~~~e~~~~ 137 (344)
T cd01316 77 GATS-T--------NAATVGELASE---AVGLKFYLNETFS--T---LILDK-ITAWAS-HFNAWPSTKPIVTHAKSQTL 137 (344)
T ss_pred eecC-C--------CHHHHHHHHhc---cCeEEEEECCCCC--C---Cccch-HHHHHH-HHHhcccCCCeEEehhhHHH
Confidence 2111 0 01223332210 0112121100000 0 00111 111222 223334588998888543 2
Q ss_pred HHHHHHHHhccCCCcceEEEeCC-CCHHHHHHHHHCC--CeEeeccc------------------cccChhhH----HHH
Q 020985 158 ADFCAIVERNKDRFTGGVTHSFT-GSAEDRDKLLTFN--MYIGINGC------------------SLKTAENL----DVV 212 (319)
Q Consensus 158 ~~~l~il~~~~~~~~~~i~H~f~-g~~~~~~~~l~~g--~y~s~sg~------------------~~~~~~~~----~~l 212 (319)
..++.+.+..+. +-.+.|.-+ .+.+.++++-+.| ++..+++. -+++++.+ +.+
T Consensus 138 ~~~l~la~~~g~--~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~k~~PPLR~~~dr~aL~~~l 215 (344)
T cd01316 138 AAVLLLASLHNR--SIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPRGQYEVRPFLPTREDQEALWENL 215 (344)
T ss_pred HHHHHHHHHHCC--CEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHhhcCCceeCCCCcCHHHHHHHHHHH
Confidence 245666666543 233557543 2344455544455 33333221 12333333 444
Q ss_pred hcCCCCCEEEcCCC-CCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHH
Q 020985 213 RGIPIERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTL 291 (319)
Q Consensus 213 ~~ip~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~ 291 (319)
.. +| .+.||. |+.. . .|.....+..-..-...++.++.. ..-++++ .+.+.+.+
T Consensus 216 ~~--id--~i~SDHaP~~~-~------------------~K~~~~a~~G~~g~e~~lpl~~~~-v~~~~i~-l~~l~~~~ 270 (344)
T cd01316 216 DY--ID--CFATDHAPHTL-A------------------EKTGNKPPPGFPGVETSLPLLLTA-VHEGRLT-IEDIVDRL 270 (344)
T ss_pred hc--CC--EEEcCCCCCCH-H------------------HhcCCCCCCCcccHHHHHHHHHHH-HHcCCCC-HHHHHHHH
Confidence 43 33 888884 5510 0 000000111113334456666653 3334699 99999999
Q ss_pred HHHHHHhcCCCC
Q 020985 292 YHNTCRVFFPQD 303 (319)
Q Consensus 292 ~~N~~rlf~~~~ 303 (319)
..|..++||+.+
T Consensus 271 s~nPAk~~gl~~ 282 (344)
T cd01316 271 HTNPKRIFNLPP 282 (344)
T ss_pred HHhHHHHhCCCC
Confidence 999999999854
No 90
>PRK07627 dihydroorotase; Provisional
Probab=97.06 E-value=0.095 Score=51.53 Aligned_cols=122 Identities=8% Similarity=0.132 Sum_probs=65.0
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC------HHhHHHHHHHHHhcCCeEEeeecCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS------LEESKEALAIAETDGRLFCTVGVHP 78 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~------~~~~~~~~~l~~~~~~i~~~~GiHP 78 (319)
-+||.|+|+..+.+. +..+.....+.+...||..++.+... .+..+.....++....+.. ++.++
T Consensus 56 G~iD~H~H~~~~g~~--------~~e~~~t~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 126 (425)
T PRK07627 56 GLVDLSARLREPGYE--------YKATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHV-YPLGA 126 (425)
T ss_pred cEEeccccccCCCcc--------ccCcHHHHHHHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeE-EEeCe
Confidence 589999999653221 02567777788888999988876422 2223333333332222221 22333
Q ss_pred CCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 79 TRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
-.... . .+.+.++.++.+. .+.++- ++.. ... ....+.+.++.++++|.|+++|+.+
T Consensus 127 ~~~g~-~-----~~~~~~i~~l~~~-----G~~~fk----~~~~-~~~----~~~~l~~~~~~~~~~~~~v~~H~E~ 183 (425)
T PRK07627 127 LTVGL-K-----GEVLTEMVELTEA-----GCVGFS----QANV-PVV----DTQVLLRALQYASTFGFTVWLRPLD 183 (425)
T ss_pred EEcCC-C-----ccCHHHHHHHHhC-----CEEEEE----cCCc-ccC----CHHHHHHHHHHHHhcCCEEEEecCC
Confidence 21110 0 0235566666531 233332 1111 001 1234677778899999999999975
No 91
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=97.03 E-value=0.016 Score=55.35 Aligned_cols=132 Identities=12% Similarity=0.038 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccch-HHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc---cc--C
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAA-ADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS---LK--T 205 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~-~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~---~~--~ 205 (319)
.+.+++.+++|+++|++|.+|+.... ....+...+.+. ..+.|+..-+.+.++.+.+.|..++..+.. +. .
T Consensus 192 ~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~g~---~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~l~~~~ 268 (371)
T cd01296 192 LEQSRRILEAAKEAGLPVKIHADELSNIGGAELAAELGA---LSADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRETY 268 (371)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcCcCCCCHHHHHHHcCC---CeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHHhCCCC
Confidence 34678889999999999999997431 112233334432 346798888899999999999998876542 11 1
Q ss_pred hhhHHHHhcCCCCCEEEcCCC-CCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChH
Q 020985 206 AENLDVVRGIPIERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDI 284 (319)
Q Consensus 206 ~~~~~~l~~ip~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~ 284 (319)
...+++++. + =++.+.||+ |+.. + -.++...+.......+++ .
T Consensus 269 ~~~~~l~~~-G-v~v~lgsD~~p~~~--------------------------------~-~~~l~~~~~~~~~~~~l~-~ 312 (371)
T cd01296 269 PPARKLIDA-G-VPVALGTDFNPGSS--------------------------------P-TSSMPLVMHLACRLMRMT-P 312 (371)
T ss_pred CCHHHHHHC-C-CcEEEecCCCCCCC--------------------------------h-HHHHHHHHHHHHHhcCCC-H
Confidence 224456554 2 368999997 5410 0 012444555555556899 9
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 020985 285 DQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 285 e~~~~~~~~N~~rlf~~~ 302 (319)
+++.+..+.|..+.+++.
T Consensus 313 ~~al~~aT~~~A~~lg~~ 330 (371)
T cd01296 313 EEALTAATINAAAALGLG 330 (371)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999999999875
No 92
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.02 E-value=0.015 Score=55.82 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCCCcEEEEeccc--hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc-ccCh--h--
Q 020985 135 FEKQFELAYATKLPMFLHMREA--AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS-LKTA--E-- 207 (319)
Q Consensus 135 f~~qlelA~~~~~Pv~iH~r~a--~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~~~~--~-- 207 (319)
++..+++++.. +||.+|+..+ ...++++.++++.+ ..+.||+.. .+.+.++.+.|+++.+.+.. .... .
T Consensus 182 l~~l~~~~~~~-~~v~vHa~~~~~i~~~l~~~~e~g~~--~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~~~~~~~ 257 (359)
T cd01309 182 LEALLPVLKGE-IPVRIHAHRADDILTAIRIAKEFGIK--ITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEEVN 257 (359)
T ss_pred HHHHHHHHcCC-eeEEEEeCCHHHHHHHHHHHHHcCCC--EEEECchhH-HHHHHHHHHcCCCEEECccccccccHHHhh
Confidence 44555555543 9999999754 34566777777532 356788766 77788888899999887652 1111 0
Q ss_pred -----hHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCC
Q 020985 208 -----NLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGIN 282 (319)
Q Consensus 208 -----~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is 282 (319)
..++.+. ..=++.+.||+|+.. . + .+...+. ++...+++
T Consensus 258 ~~~~~~~~l~~a-GGv~valgsD~~~~~----------------~--------------~----~l~~~~~-~a~~~gl~ 301 (359)
T cd01309 258 DAIDTNAYLLKK-GGVAFAISSDHPVLN----------------I--------------R----NLNLEAA-KAVKYGLS 301 (359)
T ss_pred cchhhHHHHHHc-CCceEEEECCCCCcc----------------c--------------h----hHHHHHH-HHHHcCCC
Confidence 1123332 114599999999720 0 1 1222222 22336899
Q ss_pred hHHHHHHHHHHHHHHhcCCCC
Q 020985 283 DIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 283 ~~e~~~~~~~~N~~rlf~~~~ 303 (319)
.+++.+.++.|..+++++..
T Consensus 302 -~~~al~~~T~n~A~~lg~~~ 321 (359)
T cd01309 302 -YEEALKAITINPAKILGIED 321 (359)
T ss_pred -HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999754
No 93
>PRK09236 dihydroorotase; Reviewed
Probab=96.99 E-value=0.33 Score=47.94 Aligned_cols=146 Identities=16% Similarity=0.090 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcc----eEEEeCCCCHHHHHHHHHCCCeEeeccccccCh
Q 020985 131 QRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTG----GVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTA 206 (319)
Q Consensus 131 Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~----~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~~ 206 (319)
......+.+++|++++.|+.+|....... ++++++.+....+ ...|+..-+.+.+. ..|.++..++. ++..
T Consensus 214 e~~av~~~~~la~~~~~~~hi~h~st~~~-~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~---~~~~~~~~~Pp-lr~~ 288 (444)
T PRK09236 214 CYKSSSLAVSLAKKHGTRLHVLHISTAKE-LSLFENGPLAEKRITAEVCVHHLWFDDSDYA---RLGNLIKCNPA-IKTA 288 (444)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEeCCCHHH-HHHHHHHHHCCCCEEEEEchhhhhcCHHHHh---ccCceEEECCC-CCCH
Confidence 33445677888888888887766654333 3444333211112 23466555555443 24777777775 4544
Q ss_pred hhH----HHHhcCCCCCEEEcCCC-CCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCC
Q 020985 207 ENL----DVVRGIPIERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGI 281 (319)
Q Consensus 207 ~~~----~~l~~ip~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~i 281 (319)
..+ +.++. --...+.||. |+. .. .++..|.. .+.........+..+++.+. -.++
T Consensus 289 ~~~~~l~~~l~~--G~i~~igtDh~p~~-~~---------------~k~~~~~~-~~~G~~~~e~~l~~l~~~v~-~~~~ 348 (444)
T PRK09236 289 SDREALRQALAD--DRIDVIATDHAPHT-WE---------------EKQGPYFQ-APSGLPLVQHALPALLELVH-EGKL 348 (444)
T ss_pred HHHHHHHHHHhC--CCCcEEECCCCCCC-HH---------------HhcCCccc-CCCCcccHHHHHHHHHHHHH-hcCC
Confidence 433 44443 2356999996 441 00 00000000 00000111122444444333 2479
Q ss_pred ChHHHHHHHHHHHHHHhcCCC
Q 020985 282 NDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 282 s~~e~~~~~~~~N~~rlf~~~ 302 (319)
+ .+++.+.+..|..++|++.
T Consensus 349 ~-~~~~~~~~t~~pA~~lgl~ 368 (444)
T PRK09236 349 S-LEKVVEKTSHAPAILFDIK 368 (444)
T ss_pred C-HHHHHHHHHHhHHHhcCCC
Confidence 9 9999999999999999984
No 94
>PRK08044 allantoinase; Provisional
Probab=96.98 E-value=0.11 Score=51.33 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 267 LVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 267 ~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.++.++..+.+-.+++ .+++.+.+..|..++|++.
T Consensus 341 ~l~~~~~~~v~~~~l~-~~~~v~~~s~npA~~lgl~ 375 (449)
T PRK08044 341 CMDVMFDEAVQKRGMS-LPMFGKLMATNAADIFGLQ 375 (449)
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHhHHHHhCCC
Confidence 3455555555556899 9999999999999999984
No 95
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=96.95 E-value=0.11 Score=49.86 Aligned_cols=261 Identities=16% Similarity=0.185 Sum_probs=128.6
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcCC--eEEeeec
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDGR--LFCTVGV 76 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~~--i~~~~Gi 76 (319)
-+||.|+|+..+.+. +..|+..--++|...||..++.+.. +++.++...+.+++... +....++
T Consensus 7 G~iD~HvH~r~pg~~--------~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~ 78 (361)
T cd01318 7 GVIDIHVHFREPGLT--------YKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGV 78 (361)
T ss_pred CeeEeeecCCCCCCC--------ccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCceeEEEEEEee
Confidence 489999999764321 1367878778888899999888752 24445555555543321 2234445
Q ss_pred CCC-Ccccccc-------------cCC---CHHHHHHHHHHHHhcc----CCCC-----EEEEEeecCCCCCCCCCCHHH
Q 020985 77 HPT-RCKEFEE-------------SGD---PEKHFQALLSLAKEGI----EKGK-----VVAIGECGLDYDRLHFCPSEI 130 (319)
Q Consensus 77 HP~-~~~~~~~-------------~~~---~~~~l~~l~~~l~~~~----~~~~-----~~aIGEiGLD~~~~~~~~~~~ 130 (319)
.++ ...+..+ .+. .+..+.+..+.....+ +++. ....|+.| . +...-+...
T Consensus 79 ~~~~~l~~~~~~~~~g~k~f~~~~~~~~~~~~~~l~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~--~-~~~~~P~~a 155 (361)
T cd01318 79 TGSEDLEELDKAPPAGYKIFMGDSTGDLLDDEETLERIFAEGSVLVTFHAEDEDRLRENRKELKGES--A-HPRIRDAEA 155 (361)
T ss_pred cChhhHHHHHHhhCcEEEEEEecCCCCcCCCHHHHHHHHHhcCCeEEEeCCChHHHHHHHhhhhhcc--C-CCCcCCHHH
Confidence 554 1111100 000 1122222222111000 0000 00111222 1 111123445
Q ss_pred HHHHHHHHHHHHHcCCCcEEE-EeccchHHHHHHHHhccCCC-cceEEEeCCCCHHHHHHHHHCCCeEeeccccccChhh
Q 020985 131 QRKYFEKQFELAYATKLPMFL-HMREAAADFCAIVERNKDRF-TGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAEN 208 (319)
Q Consensus 131 Q~~vf~~qlelA~~~~~Pv~i-H~r~a~~~~l~il~~~~~~~-~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~~~~ 208 (319)
......+.+++|++.+.|+.| |.- ..+.++++++...+. .-+..|+..-+.+.+. +.|-++=+++. +++.+.
T Consensus 156 E~~av~r~~~la~~~~~~~hi~Hvs--~~~~~~~i~~~k~~vt~ev~ph~L~l~~~~~~---~~~~~~k~~PP-lr~~~d 229 (361)
T cd01318 156 AAVATARALKLARRHGARLHICHVS--TPEELKLIKKAKPGVTVEVTPHHLFLDVEDYD---RLGTLGKVNPP-LRSRED 229 (361)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHhCCCeEEEeCHHHhhcCHHHHh---cCCCeEEEeCC-CCCHHH
Confidence 556678889999999988754 443 334667777653111 1234465444444443 34545545543 455443
Q ss_pred H----HHHhcCCCCCEEEcCC-CCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCCh
Q 020985 209 L----DVVRGIPIERMMIETD-SPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGIND 283 (319)
Q Consensus 209 ~----~~l~~ip~drlLlETD-~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~ 283 (319)
+ +.++. .....+.|| +|+....+. . .|.. .+.........++.+.. +..-.+++
T Consensus 230 ~~aL~~~l~~--G~id~i~SDh~P~~~~~k~---------------~-~~~~-a~~G~~g~e~~l~~~~~-~v~~~~l~- 288 (361)
T cd01318 230 RKALLQALAD--GRIDVIASDHAPHTLEEKR---------------K-GYPA-APSGIPGVETALPLMLT-LVNKGILS- 288 (361)
T ss_pred HHHHHHHHhC--CCCCEEeeCCCCCCHHHcc---------------C-Chhh-CCCCCccHHHHHHHHHH-HHHcCCCC-
Confidence 3 44443 334589999 787321110 0 0000 00000111122333333 22335799
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 020985 284 IDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 284 ~e~~~~~~~~N~~rlf~~~~ 303 (319)
.+++.+.+..|..++|++..
T Consensus 289 l~~a~~~~t~nPA~~lgl~~ 308 (361)
T cd01318 289 LSRVVRLTSHNPARIFGIKN 308 (361)
T ss_pred HHHHHHHHhHHHHHHhCCCC
Confidence 99999999999999999853
No 96
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=96.94 E-value=0.037 Score=54.21 Aligned_cols=95 Identities=19% Similarity=0.092 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHH-----------hccCCC-cceEEEeCCCCHHHHHHHHHCCCeEeec
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIVE-----------RNKDRF-TGGVTHSFTGSAEDRDKLLTFNMYIGIN 199 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~-----------~~~~~~-~~~i~H~f~g~~~~~~~~l~~g~y~s~s 199 (319)
.+.++...++|+++|+||.+|+-...+++....+ ..+.-. ....+||...+.+....+.+.|+-++..
T Consensus 197 ~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~c 276 (421)
T COG0402 197 PELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVHC 276 (421)
T ss_pred HHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEEC
Confidence 3457777888889999999999877666655544 333211 2457799999999998888899999987
Q ss_pred ccc---ccC--hhhHHHHhcCCCCCEEEcCCCCC
Q 020985 200 GCS---LKT--AENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 200 g~~---~~~--~~~~~~l~~ip~drlLlETD~P~ 228 (319)
+.. +.+ ....+.++.. =++-+.||+--
T Consensus 277 P~sN~~L~sG~~p~~~~~~~g--v~v~~gTD~~~ 308 (421)
T COG0402 277 PRSNLKLGSGIAPVRRLLERG--VNVALGTDGAA 308 (421)
T ss_pred cchhccccCCCCCHHHHHHcC--CCEEEecCCcc
Confidence 752 111 1134666654 68999999854
No 97
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=96.91 E-value=0.18 Score=48.71 Aligned_cols=153 Identities=11% Similarity=0.028 Sum_probs=86.0
Q ss_pred HHHHHHHHcCCCcEE-EEeccchHHHHHHHHhccCCCcceEEEeCCCCHH-------HHHHHHHC-CCeEeeccc-cccC
Q 020985 136 EKQFELAYATKLPMF-LHMREAAADFCAIVERNKDRFTGGVTHSFTGSAE-------DRDKLLTF-NMYIGINGC-SLKT 205 (319)
Q Consensus 136 ~~qlelA~~~~~Pv~-iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~-------~~~~~l~~-g~y~s~sg~-~~~~ 205 (319)
.++++.|.++|++|. =|+-.....+.+..+ .+ ...+-|.|++... .+..++.. .+|+++-.- +--.
T Consensus 175 ~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~-~G---~~~~tH~~n~m~~~~~r~~~~~~a~l~~~~~~~~li~dg~Hv~ 250 (374)
T cd00854 175 LELIRYLVERGIIVSIGHSDATYEQAVAAFE-AG---ATHVTHLFNAMSPLHHREPGVVGAALSDDDVYAELIADGIHVH 250 (374)
T ss_pred HHHHHHHHHCCeEEEeeCCcCCHHHHHHHHH-cC---CCeeeECCCCCCCcCCCCCcHHHHhhcCCCCeEEEEcCCCcCC
Confidence 567899999999995 788644455555443 23 2447898887533 23334433 466655322 1123
Q ss_pred hh-hHHHHhcCCCCCEEEcCCCCCc-c-ccccccccccccccCCCc----ccccccccccCCCCCccchHHHHHHHHHHh
Q 020985 206 AE-NLDVVRGIPIERMMIETDSPYC-E-IKNAHAGISFVKSTWPSK----KKEKYDQDSLVKGRNEPCLVRQVLEVVAGC 278 (319)
Q Consensus 206 ~~-~~~~l~~ip~drlLlETD~P~~-~-~~~~~~~~~~~~~~l~~~----~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~ 278 (319)
++ ++-+.+..+.+|+++-||+-.. . |.. .|. +... ..+..-. ....-......+.+.++.+.+.
T Consensus 251 ~~~~~~~~r~~g~~~~~lvtD~~~~~G~~~g-----~y~---~~~~~~~~~~~~~~~-~~g~laG~~~~l~~~~~~l~~~ 321 (374)
T cd00854 251 PAAVRLAYRAKGADKIVLVTDAMAAAGLPDG-----EYE---LGGQTVTVKDGVARL-ADGTLAGSTLTMDQAVRNMVKW 321 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEeccccccCCCCC-----eEE---ECCEEEEEECCEEEc-CCCCeeehHhhHHHHHHHHHHh
Confidence 33 4455666678999999998321 0 100 000 0000 0000000 0000011123356666666666
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCC
Q 020985 279 KGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 279 ~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.+++ .+++.+....|..+++++.
T Consensus 322 ~~l~-~~~al~~aT~npA~~lg~~ 344 (374)
T cd00854 322 GGCP-LEEAVRMASLNPAKLLGLD 344 (374)
T ss_pred hCCC-HHHHHHHHhHHHHHHcCCC
Confidence 6799 9999999999999999886
No 98
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=96.66 E-value=0.041 Score=54.70 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecc--chHHHHHHHHhccCC-----CcceEEEeCCCCHHHHHHHHHCCCeEeeccc
Q 020985 132 RKYFEKQFELAYATKLPMFLHMRE--AAADFCAIVERNKDR-----FTGGVTHSFTGSAEDRDKLLTFNMYIGINGC 201 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~--a~~~~l~il~~~~~~-----~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~ 201 (319)
.+.+++.++.|.++|+||.+|+.. +...+++.+++.... ....+.|+..-+.+.++++.+.|+++++.+.
T Consensus 294 ~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~~~~~P~ 370 (479)
T cd01300 294 PEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPN 370 (479)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCceEeCcc
Confidence 466889999999999999999974 334445544432211 1245789999999999999999999887664
No 99
>PRK09356 imidazolonepropionase; Validated
Probab=96.60 E-value=0.054 Score=52.53 Aligned_cols=132 Identities=11% Similarity=-0.014 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccch-HHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc---ccC---
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAA-ADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS---LKT--- 205 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~-~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~---~~~--- 205 (319)
+.+.+.+++|.++|+||.+|+.... ..-++.+.+.+. ..+.|+..-+.+.++.+.+.|+++++.+.. +..
T Consensus 222 ~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~~---~~~~H~~~~~~~~~~~la~~g~~~~~~P~~~~~l~~~~~ 298 (406)
T PRK09356 222 EQSERVLEAAKALGLPVKIHAEQLSNLGGAELAAEYGA---LSADHLEYLDEAGIAAMAEAGTVAVLLPGAFYFLRETQY 298 (406)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccCCCHHHHHHHcCC---cEehHhhcCCHHHHHHHHHhCCEEEECccchhhcCcccC
Confidence 4577889999999999999996321 112344444332 346799888899999999999999887752 111
Q ss_pred hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHH
Q 020985 206 AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDID 285 (319)
Q Consensus 206 ~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e 285 (319)
...+++++. --++.+.||.+... . + -..+...+.......+++ .+
T Consensus 299 ~~~~~l~~~--Gi~v~lgtD~~~~~-~---------------~----------------~~~~~~~~~~~~~~~~l~-~~ 343 (406)
T PRK09356 299 PPARLLRDA--GVPVALATDFNPGS-S---------------P----------------TESLLLAMNMACTLFRLT-PE 343 (406)
T ss_pred chHHHHHHC--CCeEEEeCCCCCCC-C---------------h----------------hHHHHHHHHHHhhhcCCC-HH
Confidence 113455554 35799999984200 0 0 012333333322345799 99
Q ss_pred HHHHHHHHHHHHhcCCC
Q 020985 286 QLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 286 ~~~~~~~~N~~rlf~~~ 302 (319)
++.+..+.|..+.+++.
T Consensus 344 ~~l~~~T~~~A~~~g~~ 360 (406)
T PRK09356 344 EALAAVTINAARALGRQ 360 (406)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999998874
No 100
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=96.59 E-value=0.02 Score=57.87 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc--hHHHHHHHHhccCCCcceEEEeCC------C-CHHHHHHHHHCCCeEee
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA--AADFCAIVERNKDRFTGGVTHSFT------G-SAEDRDKLLTFNMYIGI 198 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a--~~~~l~il~~~~~~~~~~i~H~f~------g-~~~~~~~~l~~g~y~s~ 198 (319)
..+.+.++.|.++|+||.+|++.. ..-+-.-++.. ....+|.|- | .++.++.+-..|++.|-
T Consensus 228 ~~l~~aL~~A~~~gv~V~iHa~tlne~G~~e~t~~a~----~g~~iH~~H~egaggghapdii~~~~~~~v~p~s 298 (568)
T PRK13207 228 AAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAAF----KGRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSS 298 (568)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCcccchHHHHHHHhc----CCCEEEEEeecCCCcCCchHHHHHhhcCCCccCC
Confidence 568889999999999999999742 21111223322 134666553 2 35566666666887653
No 101
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=96.59 E-value=0.018 Score=58.10 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=65.1
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCH-------------HhHHHHHHHHHhcCCeE
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSL-------------EESKEALAIAETDGRLF 71 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~-------------~~~~~~~~l~~~~~~i~ 71 (319)
-+||+|+|+..+.+ .+.+...||..++.+++.| +.+...++.++..+--+
T Consensus 130 G~ID~HvH~~~P~~-----------------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~pin~ 192 (567)
T cd00375 130 GGIDTHVHFICPQQ-----------------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNI 192 (567)
T ss_pred ceEECccCCCCccH-----------------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCCceE
Confidence 57899999765421 3567778999988864433 44555555555554213
Q ss_pred EeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEE
Q 020985 72 CTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFL 151 (319)
Q Consensus 72 ~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~i 151 (319)
...| .... +.+++|.++++. .+.+++ +..||. . -...+.+.|+.|.+++.||.+
T Consensus 193 g~~g---kg~~---------~~l~eL~e~~~a-----GA~GfK-~~eD~g----~----t~~~i~~aL~~A~~~dv~Vai 246 (567)
T cd00375 193 GFLG---KGNG---------SSPDALAEQIEA-----GACGLK-LHEDWG----A----TPAAIDTCLSVADEYDVQVAI 246 (567)
T ss_pred EEEe---cCcc---------ccHHHHHHHHHc-----CCEEEE-ecCCCC----C----CHHHHHHHHHHHHhhCCEEEE
Confidence 3333 1111 234566666642 244553 333432 1 234678889999999999999
Q ss_pred Eecc
Q 020985 152 HMRE 155 (319)
Q Consensus 152 H~r~ 155 (319)
|++.
T Consensus 247 Hadt 250 (567)
T cd00375 247 HTDT 250 (567)
T ss_pred ECCC
Confidence 9985
No 102
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.17 Score=49.88 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=68.0
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcC--CeEEeeec
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDG--RLFCTVGV 76 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~--~i~~~~Gi 76 (319)
-+||.|+|+..+.+. |.++++.--+++..-|+..++.+.. +++.++.....++... ++.+..|+
T Consensus 54 G~ID~HVH~repg~~--------~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~i 125 (430)
T COG0044 54 GLVDLHVHFREPGFE--------HKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGL 125 (430)
T ss_pred CeeEEEEecCCCCcc--------hhhhHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEE
Confidence 589999999987442 2355666666777778887777642 4455555555555332 23344444
Q ss_pred CCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc
Q 020985 77 HPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA 156 (319)
Q Consensus 77 HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a 156 (319)
=.+... .. ++.+.. . ++|...+- +...-.....++++.++.|.++|.++++|+.+.
T Consensus 126 t~~~~~----------~~-~~~~~~---------~---~~g~~~F~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~ 181 (430)
T COG0044 126 TKGNLG----------KL-ELTERG---------V---EAGFKGFM-DDSTGALDDDVLEEALEYAAELGALILVHAEDD 181 (430)
T ss_pred eccccc----------hh-hhhhhh---------h---ccceEEEe-cCCcCcCCHHHHHHHHHHHHhcCCeEEEecCCh
Confidence 333321 01 111111 0 22221110 111112345778899999999999999999764
No 103
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=96.44 E-value=0.11 Score=51.93 Aligned_cols=135 Identities=11% Similarity=-0.026 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHH-----------HHHHHhccCCCcce-EEEeCCCCH---------HHHHHHH
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADF-----------CAIVERNKDRFTGG-VTHSFTGSA---------EDRDKLL 190 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~-----------l~il~~~~~~~~~~-i~H~f~g~~---------~~~~~~l 190 (319)
.+.+...+++|.++|+||.+|+-....++ ++.+.+.+....+. +.||..-+. +.++.+.
T Consensus 220 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la 299 (488)
T PRK06151 220 VDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLA 299 (488)
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHH
Confidence 35588899999999999999996543322 34444444222333 569998777 8999999
Q ss_pred HCCCeEeecccc-cc----ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCcc
Q 020985 191 TFNMYIGINGCS-LK----TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEP 265 (319)
Q Consensus 191 ~~g~y~s~sg~~-~~----~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P 265 (319)
+.|.+++..+.. .+ ....+++++. + =++-+.||+.. +. |
T Consensus 300 ~~g~~v~~~P~~~~~~g~~~~p~~~l~~~-G-v~v~lGtD~~~--~~--------------------------------~ 343 (488)
T PRK06151 300 EHGVSIVHCPLVSARHGSALNSFDRYREA-G-INLALGTDTFP--PD--------------------------------M 343 (488)
T ss_pred hcCCEEEECchhhhhhccccccHHHHHHC-C-CcEEEECCCCC--cc--------------------------------H
Confidence 999999877642 11 1113445544 2 35999999721 00 0
Q ss_pred chHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 266 CLVRQVLEVVAGC-----KGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 266 ~~l~~v~~~iA~~-----~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
.........+.+. ..++ .+++.+..+.|..+++++..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~-~~~al~~aT~~~A~~lg~~~ 385 (488)
T PRK06151 344 VMNMRVGLILGRVVEGDLDAAS-AADLFDAATLGGARALGRDD 385 (488)
T ss_pred HHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhCCCC
Confidence 0001111111111 1368 99999999999999998764
No 104
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=96.34 E-value=0.018 Score=50.24 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=49.5
Q ss_pred HHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHH
Q 020985 63 IAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELA 142 (319)
Q Consensus 63 l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA 142 (319)
-+.++|+-+..+|--|....+ -.+++++++.++. .+.++ |||--- ...+.+.| -|-.....|
T Consensus 59 e~~kfp~r~v~lgtlpmn~~e--------~avee~~rcvk~l----g~~g~-eigshv---~e~~ld~~--d~~ply~~~ 120 (297)
T KOG4245|consen 59 ECQKFPDRFVGLGTLPMNAPE--------LAVEEMERCVKEL----GFKGF-EIGSHV---AEKDLDAQ--DFFPLYAAA 120 (297)
T ss_pred HHHhcchhccccCccCCcCHH--------HHHHHHHHHHHHc----CCCce-eecccc---ccccCchH--HHhHHHHHH
Confidence 345788888889999998754 3567888887641 12233 555221 11223333 477888999
Q ss_pred HcCCCcEEEEecc
Q 020985 143 YATKLPMFLHMRE 155 (319)
Q Consensus 143 ~~~~~Pv~iH~r~ 155 (319)
.++.+.+.+|--+
T Consensus 121 e~l~~~lfvhpwd 133 (297)
T KOG4245|consen 121 EELKCSLFVHPWD 133 (297)
T ss_pred HhheeeEEecchh
Confidence 9999999999854
No 105
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=96.27 E-value=0.015 Score=58.54 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=62.8
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC---------CCHHhHHHHHHHHHhcCCeEEeee
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG---------GSLEESKEALAIAETDGRLFCTVG 75 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~---------~~~~~~~~~~~l~~~~~~i~~~~G 75 (319)
-+||+|+|+..+.+ .+.+...||..++..+ ..++.....++.++..+--|.++|
T Consensus 134 G~ID~HVH~~~Pg~-----------------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~g 196 (569)
T PRK13308 134 GAIDVHVHFDSAQL-----------------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLG 196 (569)
T ss_pred CEEEeeeCCCCccH-----------------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEc
Confidence 57999999876422 2567778999888632 234445555555554442122232
Q ss_pred cCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 76 VHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 76 iHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
. ... ..+++|+++++. .+.++. +..||. .....+.+.++.|+++++||.+|++.
T Consensus 197 k---G~~---------s~~aeL~eli~a-----GA~GfK-i~ed~g--------~t~~~i~~aL~~A~~~dv~VaiHadt 250 (569)
T PRK13308 197 R---GNS---------SKPAALIEQVEA-----GACGLK-IHEDWG--------AMPAAIDTCLEVADEYDFQVQLHTDT 250 (569)
T ss_pred C---Ccc---------cCHHHHHHHHHC-----CCCEEe-ecCCCC--------CCHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 1 111 123456666542 233442 222321 12356888999999999999999986
No 106
>PRK14085 imidazolonepropionase; Provisional
Probab=96.27 E-value=0.099 Score=50.47 Aligned_cols=132 Identities=8% Similarity=0.008 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccch-HHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc-c--cC--h
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAA-ADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS-L--KT--A 206 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~-~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~--~~--~ 206 (319)
+.+++.++.|.++|+|+.+|+.... ..-++.+.+.+. ..+-|+..-+.+.++++.+.|..+++.+.. + .. .
T Consensus 207 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~~~~~~g~---~~i~H~~~l~~~~~~~la~~gv~~~~~P~~~~~~~~~~~ 283 (382)
T PRK14085 207 DQSRRVLTAGRAAGLGLRVHGNQLGPGPGVRLAVELGA---ASVDHCTYLTDADVDALAGSGTVATLLPGAEFSTRQPYP 283 (382)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCcccCChHHHHHHHcCC---CcHHHhCCCCHHHHHHHHHcCCEEEECcHHHHhcCCCCc
Confidence 3477888999999999999997522 122344444442 346799888899999999999988876642 1 11 2
Q ss_pred hhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHH
Q 020985 207 ENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQ 286 (319)
Q Consensus 207 ~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~ 286 (319)
..+++++. -=++.+.||++...+ ....+...+.......+++ .++
T Consensus 284 ~~~~l~~a--Gv~v~lgsD~~~~~~--------------------------------~~~~~~~~~~~~~~~~~l~-~~~ 328 (382)
T PRK14085 284 DARRLLDA--GVTVALASDCNPGSS--------------------------------YTSSMPFCVALAVRQMGMT-PAE 328 (382)
T ss_pred hHHHHHHC--CCcEEEEeCCCCCCC--------------------------------hHHHHHHHHHHHHHhcCCC-HHH
Confidence 23455554 236999999852100 0012222233333345799 999
Q ss_pred HHHHHHHHHHHhcCCC
Q 020985 287 LSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 287 ~~~~~~~N~~rlf~~~ 302 (319)
+.+..+.|..+++++.
T Consensus 329 al~~aT~~~A~~lg~~ 344 (382)
T PRK14085 329 AVWAATAGGARALRRD 344 (382)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999999875
No 107
>PRK09060 dihydroorotase; Validated
Probab=96.24 E-value=1.1 Score=44.34 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=28.5
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG 51 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~ 51 (319)
-+||.|+|+...... +..++....+++...||..++.+.
T Consensus 57 G~ID~HvH~~~~~~~--------~~e~~~t~~~aa~~gGvTtv~~~p 95 (444)
T PRK09060 57 GVIDSQVHFREPGLE--------HKEDLETGSRAAVLGGVTAVFEMP 95 (444)
T ss_pred CEEeccccccCCCCC--------ccchHHHHHHHHHhCCcEEEEECC
Confidence 589999998653221 125777777888889999888864
No 108
>PRK13985 ureB urease subunit beta; Provisional
Probab=96.20 E-value=0.027 Score=56.70 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=63.5
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCH-----------Hh--HHHHHHHHHhcCCeE
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSL-----------EE--SKEALAIAETDGRLF 71 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~-----------~~--~~~~~~l~~~~~~i~ 71 (319)
-+||+|+|+..+.. .+.+...||..++..++.| .. .....+.+++.+-
T Consensus 130 G~ID~HvH~~~P~~-----------------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~pv-- 190 (568)
T PRK13985 130 GGIDTHIHFISPQQ-----------------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSM-- 190 (568)
T ss_pred CEEEeeCCCCCccH-----------------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhccCc--
Confidence 57999999865421 2457778999888754333 22 2455555555441
Q ss_pred EeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEE
Q 020985 72 CTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFL 151 (319)
Q Consensus 72 ~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~i 151 (319)
-+|+|-.... ..+++|+++++. .+++++ ++.||. .+ ...+.+.++.|.++++||.+
T Consensus 191 -n~gf~gkG~~---------~~l~eL~el~~a-----GA~GfK-~~ed~g----~t----~~~I~~aL~vA~~~dv~V~i 246 (568)
T PRK13985 191 -NLGFLGKGNS---------SNDASLADQIEA-----GAIGFK-IHEDWG----TT----PSAINHALDVADKYDVQVAI 246 (568)
T ss_pred -cEEEecCCcc---------CCHHHHHHHHHc-----CCEEEE-ECCccC----CC----HHHHHHHHHHHHHcCCEEEE
Confidence 1333311110 124566666542 345554 444432 11 24677888999999999999
Q ss_pred Eeccc
Q 020985 152 HMREA 156 (319)
Q Consensus 152 H~r~a 156 (319)
|++..
T Consensus 247 Htdtl 251 (568)
T PRK13985 247 HTDTL 251 (568)
T ss_pred eCCCC
Confidence 99853
No 109
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=96.18 E-value=0.03 Score=56.76 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHH---HHHHHHhccC
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAAD---FCAIVERNKD 169 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~---~l~il~~~~~ 169 (319)
.+.+.+.++.|.++|+||.+|+ +...+ +-+.++.++.
T Consensus 226 ~e~L~~al~~A~e~gv~V~iH~-ET~~E~g~ve~t~~a~g~ 265 (567)
T TIGR01792 226 PAAIDNALSVADEYDVQVAVHT-DTLNESGFVEDTIAAFKG 265 (567)
T ss_pred HHHHHHHHHHHHHcCCEEEEeC-CCcccchHHHHHHHHHCC
Confidence 4578889999999999999999 55555 5556666654
No 110
>PRK13404 dihydropyrimidinase; Provisional
Probab=96.17 E-value=1.2 Score=44.48 Aligned_cols=230 Identities=14% Similarity=0.104 Sum_probs=114.5
Q ss_pred HHHHHHcCCCEEEEe------CCCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 36 LSRAWSSGVDRIIVT------GGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 36 l~~~~~~Gv~~~v~~------~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
+.++.+.|+..+-+. ..+.+....+++.++++... +.+|+.... .++.+.+-+.
T Consensus 141 v~~l~~~G~~~iKi~~~~~~~~~~~~~l~~~~~~a~~~g~~---V~~Hae~~~----------~i~~~~~~~~------- 200 (477)
T PRK13404 141 LPALIAQGYTSFKVFMTYDDLKLDDRQILDVLAVARRHGAM---VMVHAENHD----------MIAWLTKRLL------- 200 (477)
T ss_pred HHHHHHcCCCEEEEEecCCCCCCCHHHHHHHHHHHHhcCCE---EEEEeCCHH----------HHHHHHHHHH-------
Confidence 556667787665543 13345566666666665432 557886532 2222222211
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcE-EEEeccchHHHHHHHHhccCCCcce----EEEeCCCCHH
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPM-FLHMREAAADFCAIVERNKDRFTGG----VTHSFTGSAE 184 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv-~iH~r~a~~~~l~il~~~~~~~~~~----i~H~f~g~~~ 184 (319)
.-|.++...+... -+.........+.+++|++++.|+ +.|.- ..+.++++++.......+ ..|+..-+.+
T Consensus 201 --~~G~~~~~~~~~~-rp~~~E~~~v~~~~~la~~~g~~~hi~Hvs--~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~ 275 (477)
T PRK13404 201 --AAGLTAPKYHAIS-RPMLAEREATHRAIALAELVDVPILIVHVS--GREAAEQIRRARGRGLKIFAETCPQYLFLTAE 275 (477)
T ss_pred --HCCCcchhhcccc-CCHHHHHHHHHHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHCCCeEEEEEChhhhccCHH
Confidence 1233333322111 233455677888999999999999 77875 333344444332111122 2356555555
Q ss_pred HHHHHHHCCCeEeeccccccChhhHH-HHhcCC-CCCEEEcCCC-CCccccccccccccccccCCCcccccccccccCCC
Q 020985 185 DRDKLLTFNMYIGINGCSLKTAENLD-VVRGIP-IERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKG 261 (319)
Q Consensus 185 ~~~~~l~~g~y~s~sg~~~~~~~~~~-~l~~ip-~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~ 261 (319)
.+...-..|-.+.+++. +++.+.++ +.+.+- -.-=.+.||- |+..-.+ .+..+- . .+..|.. .+...
T Consensus 276 ~~~~~~~~g~~~k~~Pp-lr~~~d~~aL~~~l~~G~id~i~sDHap~~~~eK--~~~~~~-----~-~~~~~~~-~~~G~ 345 (477)
T PRK13404 276 DLDRPGMEGAKYICSPP-PRDKANQEAIWNGLADGTFEVFSSDHAPFRFDDT--DGKLAA-----G-ANPSFKA-IANGI 345 (477)
T ss_pred HhcCccccCCceEECCC-CCChHHHHHHHHHHhCCCceEEecCCCCCCcccc--hhhhhc-----c-CCCCHhh-CCCCc
Confidence 43221114667777775 45444332 333322 1223688994 5520000 000000 0 0000000 00001
Q ss_pred CCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985 262 RNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 262 ~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~ 301 (319)
...-..+..+++....-.+++ .+++.+.+..|..++|++
T Consensus 346 ~gie~~l~~ll~~~v~~~~ls-~~~~~~~~t~~pA~~lgl 384 (477)
T PRK13404 346 PGIETRLPLLFSEGVVKGRIS-LNRFVALTSTNPAKLYGL 384 (477)
T ss_pred ccHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhCC
Confidence 222223555555544445799 999999999999999998
No 111
>PRK09059 dihydroorotase; Validated
Probab=96.12 E-value=0.093 Score=51.66 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=70.1
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhc--CCeEEeeec
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETD--GRLFCTVGV 76 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~--~~i~~~~Gi 76 (319)
-+||.|+|+..+.. .+..++....+.+...||..++.+.. +.+.+....+.+++. -++++..++
T Consensus 61 G~ID~HvH~~~~~~--------~~~e~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~ 132 (429)
T PRK09059 61 GLVDARVFVGEPGA--------EHRETIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAI 132 (429)
T ss_pred cEEecccccCCCCc--------hhhhhHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEE
Confidence 58999999964311 01246666777888889999888753 234455555555443 245555666
Q ss_pred CCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 77 HPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 77 HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
.++... +.++++.++.+. .+.++-. |. .. .. -..++.+.++.++++|+||++|+.+
T Consensus 133 ~~~~~~---------~~l~e~~~l~~~-----Gv~~f~~-~~--~~--~~----~~~~l~~~~~~~~~~~~~v~~H~E~ 188 (429)
T PRK09059 133 TKGLAG---------EEMTEFGLLRAA-----GAVAFTD-GR--RS--VA----NTQVMRRALTYARDFDAVIVHETRD 188 (429)
T ss_pred ecCCCC---------cchHHHHHHHhc-----CcEEEec-CC--cc--cC----CHHHHHHHHHHHHhcCCEEEEecCC
Confidence 554322 234555555431 2334421 10 11 01 1245777789999999999999865
No 112
>PRK07575 dihydroorotase; Provisional
Probab=96.11 E-value=1.4 Score=43.45 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEE-EeccchHHHHHHHHhccCCC--cceEEEeCCCCHHHHHHHHHCCCeEeeccccc
Q 020985 127 PSEIQRKYFEKQFELAYATKLPMFL-HMREAAADFCAIVERNKDRF--TGGVTHSFTGSAEDRDKLLTFNMYIGINGCSL 203 (319)
Q Consensus 127 ~~~~Q~~vf~~qlelA~~~~~Pv~i-H~r~a~~~~l~il~~~~~~~--~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~ 203 (319)
+.......+.+.+++|++++.|+.| |.- ..+-++++++..... .-+..|+.--+.+.+. +.|.++-+++. +
T Consensus 206 p~~aE~~av~~~~~la~~~g~~lhi~HiS--t~~~v~~i~~~k~~~vt~ev~phhL~l~~~~~~---~~~~~~k~~PP-L 279 (438)
T PRK07575 206 DEEAALLATRLALKLSKKYQRRLHILHLS--TAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYE---RIGTLAQMNPP-L 279 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHhcCCCEEEEEchhhheeCHHHHh---CCCceEEEeCC-C
Confidence 3445667889999999999999988 885 455556666543211 1234565544555443 24666666665 5
Q ss_pred cChhhH----HHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhc
Q 020985 204 KTAENL----DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCK 279 (319)
Q Consensus 204 ~~~~~~----~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~ 279 (319)
++.+.+ +.++. -.-..+.||..-.... . +...|.. .+..-...-..++.+++.+. -.
T Consensus 280 R~~~d~~~L~~~l~~--G~id~i~sDh~p~~~~-----~----------k~~~~~~-~~~G~~g~e~~l~~l~~~~~-~~ 340 (438)
T PRK07575 280 RSPEDNEALWQALRD--GVIDFIATDHAPHTLE-----E----------KAQPYPN-SPSGMPGVETSLPLMLTAAM-RG 340 (438)
T ss_pred CCHHHHHHHHHHHhC--CCCCEEecCCCCCCHH-----H----------ccCCccc-CCCCcccHHHHHHHHHHHHh-cC
Confidence 555433 44443 2235699996431100 0 0000000 00000122234566665543 34
Q ss_pred CCChHHHHHHHHHHHHHHhcCCC
Q 020985 280 GINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 280 ~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
+++ .+++.+.+..|..++|++.
T Consensus 341 ~ls-l~~~~~~~s~npAk~lgl~ 362 (438)
T PRK07575 341 KCT-VAQVVRWMSTAVARAYGIP 362 (438)
T ss_pred CCC-HHHHHHHHhhhHHHHcCCC
Confidence 699 9999999999999999983
No 113
>PRK07328 histidinol-phosphatase; Provisional
Probab=96.09 E-value=1 Score=41.37 Aligned_cols=192 Identities=17% Similarity=0.137 Sum_probs=98.1
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCH-----------------Hh----HHHHHH
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSL-----------------EE----SKEALA 62 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~-----------------~~----~~~~~~ 62 (319)
||++|.|+|...-. .+ ..++++++++|.+.|+..+.+.-=.+ ++ +..+.+
T Consensus 1 ~m~~D~H~HT~~s~-~~--------~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~ 71 (269)
T PRK07328 1 KMLVDYHMHTPLCG-HA--------VGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVER 71 (269)
T ss_pred CCceeeccCCCCCC-CC--------CCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHH
Confidence 68899999986521 11 25799999999999998776542111 11 222344
Q ss_pred HHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEe------ecCCCCCC-----CCCCHHHH
Q 020985 63 IAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGE------CGLDYDRL-----HFCPSEIQ 131 (319)
Q Consensus 63 l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGE------iGLD~~~~-----~~~~~~~Q 131 (319)
+.++++++-..+|+==.+... ..+.++++++. .+-=..||- .++|+... .....+.-
T Consensus 72 l~~~y~~i~Il~GiE~~~~~~---------~~~~~~~~l~~---~~~D~vigSvH~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (269)
T PRK07328 72 LRARFPDLYVRLGIEADYHPG---------TEEFLERLLEA---YPFDYVIGSVHYLGAWGFDNPDFVAEYEERDLDELY 139 (269)
T ss_pred HHHHcCCCeEEEEEEecccCC---------cHHHHHHHHHh---CCCCeEEEEEeecCCcCCCChhHHHHHhcCCHHHHH
Confidence 556676554455552222211 12233333332 110012221 22332100 01112233
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccc--------
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSL-------- 203 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~-------- 203 (319)
+..|+..++++.....-|+=|.- +++.+..... .....--.+.++.+.+.|.-+-++...+
T Consensus 140 ~~Y~~~~~~~~~~~~~dvlgH~d--------~i~~~~~~~~---~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~y 208 (269)
T PRK07328 140 RRYFALVEQAARSGLFDIIGHPD--------LIKKFGHRPR---EDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIY 208 (269)
T ss_pred HHHHHHHHHHHHcCCCCEeeCcc--------HHHHcCCCCc---hhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCC
Confidence 55666777777655555666662 2333321100 0000000345666777898888876322
Q ss_pred cChhhHHHHhcCCCCCEEEcCCCCC
Q 020985 204 KTAENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 204 ~~~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.+....+..+..+. +|.++||+..
T Consensus 209 p~~~il~~~~~~g~-~itigSDAH~ 232 (269)
T PRK07328 209 PSPALLRACRERGI-PVVLGSDAHR 232 (269)
T ss_pred CCHHHHHHHHHcCC-CEEEeCCCCC
Confidence 23345577777765 5999999986
No 114
>PRK04250 dihydroorotase; Provisional
Probab=95.87 E-value=1.9 Score=41.97 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 267 LVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 267 ~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.++-++.. ..-..++ .+++.+.+..|..++|++.
T Consensus 294 ~lpl~~~~-v~~~~ls-l~~~v~~~t~npAk~lgl~ 327 (398)
T PRK04250 294 EVPLLLDA-ANKGMIS-LFDIVEKMHDNPARIFGIK 327 (398)
T ss_pred HHHHHHHH-HHhcCCC-HHHHHHHHHHHHHHHhCCC
Confidence 34444432 2224589 9999999999999999985
No 115
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=95.83 E-value=0.21 Score=50.35 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEec-------cch---HHHHHHHHhccCC-------CcceEEEeCCCC
Q 020985 132 RKYFEKQFELAYATKLPMFLHMR-------EAA---ADFCAIVERNKDR-------FTGGVTHSFTGS 182 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r-------~a~---~~~l~il~~~~~~-------~~~~i~H~f~g~ 182 (319)
.++.....+.+.++++|..||.+ +.. .+++++.+..+.. ..-+-||+|.|.
T Consensus 208 ~~ii~~l~~~~~~lg~ph~iH~h~nnlg~pgn~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~ 275 (541)
T cd01304 208 REILKGLAEANEELGLPHSIHVHCNNLGVPGNYETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGT 275 (541)
T ss_pred HHHHHHHHHHHHhcCCceEEEEccccCCCCCcHHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccC
Confidence 56788889999999999999987 233 4555565555421 113457899886
No 116
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=95.74 E-value=2.1 Score=41.46 Aligned_cols=268 Identities=14% Similarity=0.084 Sum_probs=134.5
Q ss_pred cEEeeccCCCCcc-ccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC--CCHHhHHHHHHHHHhc--CCeEEeeecC--
Q 020985 5 RLIDIAVNFTDGM-FKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG--GSLEESKEALAIAETD--GRLFCTVGVH-- 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~-~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~--~~~~~~~~~~~l~~~~--~~i~~~~GiH-- 77 (319)
-+||.|+|..... |.. ........++..+.+.+.+.|+..++-.. ..++.....++..+++ .+-...+|+|
T Consensus 54 G~ID~HvHG~~g~~~~~--~~~~~~~~~l~~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlE 131 (382)
T PRK11170 54 GFIDLQLNGCGGVQFND--TAEAISVETLEIMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLE 131 (382)
T ss_pred ceeeeeecCccCccccc--CccCCCHHHHHHHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 5899999975431 100 00000112344555556788998776432 2345544444333221 1223467887
Q ss_pred -CCCcccccccCCCHHH-----HHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEE
Q 020985 78 -PTRCKEFEESGDPEKH-----FQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFL 151 (319)
Q Consensus 78 -P~~~~~~~~~~~~~~~-----l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~i 151 (319)
|+...... .-..+++ .++++.+++. .+.+. -+-|- + +. .. . ++++.+.+.|.-|++
T Consensus 132 GPfi~~~~~-Gah~~~~~~~p~~~~~~~~~~~---~~~i~---~iTlA--P---E~-~~----~-~~i~~l~~~gi~vs~ 193 (382)
T PRK11170 132 GPYLNLVKK-GTHNPEFIRKPDAEMVDFLCEN---ADVIT---KVTLA--P---EM-VD----A-EVIRKLVEAGIVVSA 193 (382)
T ss_pred cCCCCcccC-CCCCHHHhcCcCHHHHHHHHhc---cCCEE---EEEEC--C---CC-Cc----H-HHHHHHHHCCcEEEe
Confidence 44433210 0011122 2445555432 12222 22333 1 11 11 1 457778888988887
Q ss_pred Eeccc-hHHHHHHHHhccCCCcceEEEeCCCCHH-------HHHHHHH-CCCeEeeccccc-cChhhH-HHHhcCCCCCE
Q 020985 152 HMREA-AADFCAIVERNKDRFTGGVTHSFTGSAE-------DRDKLLT-FNMYIGINGCSL-KTAENL-DVVRGIPIERM 220 (319)
Q Consensus 152 H~r~a-~~~~l~il~~~~~~~~~~i~H~f~g~~~-------~~~~~l~-~g~y~s~sg~~~-~~~~~~-~~l~~ip~drl 220 (319)
---.| .+++.+.++ .+ ...+-|.||+.+. .+..++. .++|.++=.--. -.+... -+.+.-+ +|+
T Consensus 194 GHs~A~~~~~~~a~~-~G---a~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~~~k~-~~~ 268 (382)
T PRK11170 194 GHSNATYEEAKAGFR-AG---ITFATHLYNAMPYITGREPGLVGAILDEPDVYCGIIADGLHVDYANIRNAKRLKG-DKL 268 (382)
T ss_pred eCCcCCHHHHHHHHH-cC---CCEEeeccccCCcccCCCcchhhHhhcCCCcEEEEEcCcccCCHHHHHHHHHhcC-CcE
Confidence 44444 555555553 34 3568899998643 3444554 357776522110 133333 4555557 999
Q ss_pred EEcCCCCCccccccccccccccccCCC-ccccc-ccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 020985 221 MIETDSPYCEIKNAHAGISFVKSTWPS-KKKEK-YDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRV 298 (319)
Q Consensus 221 LlETD~P~~~~~~~~~~~~~~~~~l~~-~~~~k-~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rl 298 (319)
++=||+--..--| .| +|.-..+.. ...|+ +..+. .-......+...++.+.+..+++ .+++.+....|..++
T Consensus 269 ~lvtDa~~~~G~~--~g-~y~l~~~~v~v~~g~~~~~~G--~LAGs~l~l~~~v~~l~~~~~~~-~~eal~~aT~npA~~ 342 (382)
T PRK11170 269 CLVTDATAPAGAN--IE-QFIFAGKTIYYRDGLCVDENG--TLSGSALTMIEAVRNLVEHVGIA-LDEALRMATLYPARA 342 (382)
T ss_pred EEEeccccCCCCC--CC-eEEECCEEEEEECCEEECCCC--cccccHhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 9999975421000 01 111000000 00111 00000 01234456677777777777999 999999999999999
Q ss_pred cCCCC
Q 020985 299 FFPQD 303 (319)
Q Consensus 299 f~~~~ 303 (319)
+++..
T Consensus 343 lgl~~ 347 (382)
T PRK11170 343 IGVDK 347 (382)
T ss_pred hCCCC
Confidence 99853
No 117
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=95.73 E-value=0.025 Score=57.17 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA 156 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a 156 (319)
..+.+.++.|+++++||.+|++..
T Consensus 234 ~~i~~aL~~A~~~gv~V~iHadtl 257 (573)
T PRK13206 234 AAIDACLRVADAAGVQVALHSDTL 257 (573)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCc
Confidence 467888999999999999999853
No 118
>PTZ00124 adenosine deaminase; Provisional
Probab=95.70 E-value=1.2 Score=42.91 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCCCcEEEEeccc--h---HHHHHHHHhccCCCcceEEEeCCC--CHHHHHHHHHCCCeEeecccc---c
Q 020985 134 YFEKQFELAYATKLPMFLHMREA--A---ADFCAIVERNKDRFTGGVTHSFTG--SAEDRDKLLTFNMYIGINGCS---L 203 (319)
Q Consensus 134 vf~~qlelA~~~~~Pv~iH~r~a--~---~~~l~il~~~~~~~~~~i~H~f~g--~~~~~~~~l~~g~y~s~sg~~---~ 203 (319)
-|...++.|++.|+++.+|+... . .++.+.+...+. .-|-|++.- +++.++.+.+.|+-+.+.+.. +
T Consensus 207 ~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~---~RIGHG~~~~~d~~l~~~l~~~~I~lEvCPtSN~~~ 283 (362)
T PTZ00124 207 PFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKV---KRIGHGIRVAESQELIDMVKEKDILLEVCPISNVLL 283 (362)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCC---CccccccccCCCHHHHHHHHHcCCeEEECCcchhhh
Confidence 38888999999999999999874 2 245555544442 337788764 688889999999988887642 1
Q ss_pred cC------hhhHHHHhc-CCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHH
Q 020985 204 KT------AENLDVVRG-IPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVA 276 (319)
Q Consensus 204 ~~------~~~~~~l~~-ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA 276 (319)
+. -.++.+++. + .+.+.||-|-+. + ..+..=++.++
T Consensus 284 ~~v~~~~~HPi~~l~~~Gv---~v~InTDDp~~~------------------------------~----t~l~~Ey~~~~ 326 (362)
T PTZ00124 284 NNAKSMDTHPIRKLYDAGV---KVSVNSDDPGMF------------------------------L----TNINDDYEELY 326 (362)
T ss_pred hcCCchhhHHHHHHHHCCC---cEEEeCCCcccc------------------------------C----CChhHHHHHHH
Confidence 11 113455554 4 489999999731 0 14556688888
Q ss_pred HhcCCChHHHHHHHHHHHHHH
Q 020985 277 GCKGINDIDQLSRTLYHNTCR 297 (319)
Q Consensus 277 ~~~~is~~e~~~~~~~~N~~r 297 (319)
+..|++ .+++.++. .|+.+
T Consensus 327 ~~~gls-~~~l~~l~-~nai~ 345 (362)
T PTZ00124 327 THLNFT-LADFMKMN-EWALE 345 (362)
T ss_pred HHcCCC-HHHHHHHH-HHHHH
Confidence 889999 99998875 55544
No 119
>PRK00369 pyrC dihydroorotase; Provisional
Probab=95.64 E-value=1.6 Score=42.44 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=29.1
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG 51 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~ 51 (319)
-+||.|+|+..+.+. +..++..--++|...|+..++.+.
T Consensus 48 G~ID~HvH~r~pg~~--------~~ed~~sgs~AAa~GGvTtv~~mP 86 (392)
T PRK00369 48 GAIDLHVHLRGLKLS--------YKEDVASGTSEAAYGGVTLVADMP 86 (392)
T ss_pred CEEEcccccCCCCCc--------ccccHHHHHHHHHhCCcEEEEECC
Confidence 479999999764321 136777777788888999888875
No 120
>PRK13404 dihydropyrimidinase; Provisional
Probab=95.64 E-value=0.55 Score=46.87 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=67.7
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC--HHhHHHHHHHHHhc--CCeEEeeecCCCC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS--LEESKEALAIAETD--GRLFCTVGVHPTR 80 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~--~~~~~~~~~l~~~~--~~i~~~~GiHP~~ 80 (319)
-+||.|+|+......+. .+..++....+.+...||..++.+..+ +.+....++..... ...+..+|+|-.-
T Consensus 55 G~ID~H~H~~~~~~~~~-----~~~e~~~~~s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~ 129 (477)
T PRK13404 55 GGVDSHCHIDQPSGDGI-----MMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIV 129 (477)
T ss_pred CEEEeEEcCCccccCCc-----cccchHHHHHHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEe
Confidence 58999999965310000 012567777778888999988876532 22333333322211 1223445555211
Q ss_pred cccccccCCCHHHH-HHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 81 CKEFEESGDPEKHF-QALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 81 ~~~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
.. .. ++.+ +++.++++. .+.+|. +-+++...... ...+.+.++.|+++|++|.+|+.+
T Consensus 130 ~~-~~-----~~~~~~~v~~l~~~-----G~~~iK-i~~~~~~~~~~-----~~~l~~~~~~a~~~g~~V~~Hae~ 188 (477)
T PRK13404 130 AD-PT-----EEVLTEELPALIAQ-----GYTSFK-VFMTYDDLKLD-----DRQILDVLAVARRHGAMVMVHAEN 188 (477)
T ss_pred cC-CC-----hhhHHHHHHHHHHc-----CCCEEE-EEecCCCCCCC-----HHHHHHHHHHHHhcCCEEEEEeCC
Confidence 11 00 1223 456666542 222331 21221111111 245888889999999999999975
No 121
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=95.52 E-value=1.9 Score=43.76 Aligned_cols=24 Identities=4% Similarity=0.079 Sum_probs=21.8
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 279 KGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 279 ~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
|+++ .+++.+.++.|..+.||+..
T Consensus 428 Re~s-L~EI~~mtTanPAkaLGL~d 451 (556)
T TIGR03121 428 REYS-LYEIAIMTRAGPAKLLGLTD 451 (556)
T ss_pred CCCC-HHHHHHHHHHHHHHHhCCCC
Confidence 5788 99999999999999999864
No 122
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=95.42 E-value=0.77 Score=43.02 Aligned_cols=142 Identities=18% Similarity=0.121 Sum_probs=93.2
Q ss_pred CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCC-CcEEEEeccc--hHHHHHHHHhccCCCcceEEEeCCCCH--
Q 020985 109 KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATK-LPMFLHMREA--AADFCAIVERNKDRFTGGVTHSFTGSA-- 183 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~-~Pv~iH~r~a--~~~~l~il~~~~~~~~~~i~H~f~g~~-- 183 (319)
.++|||-.|-+... +.+ ...|..+++.|++.+ +++.+|+... ...+.+.+.-. +.-|-|++.-..
T Consensus 135 ~vvG~Dl~g~E~~~--~~~----~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~~~~~----~~RIgHg~~~~~~p 204 (305)
T cd00443 135 YVVGIDLVGDESKG--ENP----LRDFYSYYEYARRLGLLGLTLHCGETGNREELLQALLLL----PDRIGHGIFLLKHP 204 (305)
T ss_pred CEEEEEcCCCCCCC--CCC----HHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHHHHhc----cceeeceEecCCCH
Confidence 48888777644211 011 345788899999999 9999999864 33444544322 244788776554
Q ss_pred HHHHHHHHCCCeEeecccc---ccC------hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCccccccc
Q 020985 184 EDRDKLLTFNMYIGINGCS---LKT------AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYD 254 (319)
Q Consensus 184 ~~~~~~l~~g~y~s~sg~~---~~~------~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~ 254 (319)
+.++.+.+.|+-+.+.+.. +.. ..++.+++. + =++-+.||.|-..
T Consensus 205 ~~~~~l~~~~i~ie~CP~SN~~~~~~~~~~~hP~~~~~~~-G-~~v~i~TDd~~~~------------------------ 258 (305)
T cd00443 205 ELIYLVKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFFKA-G-LPVSLSTDDPGIF------------------------ 258 (305)
T ss_pred HHHHHHHHcCCEEEECcchhhhhcCCCChhhChHHHHHHC-C-CeEEEeCCCCccc------------------------
Confidence 8889999999988887642 111 113455544 2 2689999999621
Q ss_pred ccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 020985 255 QDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRV 298 (319)
Q Consensus 255 ~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rl 298 (319)
+ ..+..-+..++...|++ .+++.++. .|+.+.
T Consensus 259 --------~--~~l~~E~~~~~~~~~l~-~~~l~~l~-~nsi~~ 290 (305)
T cd00443 259 --------G--TSLSEEYSLAAKTFGLT-FEDLCELN-RNSVLS 290 (305)
T ss_pred --------C--CChHHHHHHHHHHcCcC-HHHHHHHH-HHHHHH
Confidence 0 15566677788888999 99988877 555443
No 123
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=95.39 E-value=0.37 Score=45.27 Aligned_cols=131 Identities=16% Similarity=0.103 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCCcEEE-Eec-cchHHHHHHHHhccCCCcceEE-Ee---------CCCCHHHHHHHHHCCCeEeeccc--
Q 020985 136 EKQFELAYATKLPMFL-HMR-EAAADFCAIVERNKDRFTGGVT-HS---------FTGSAEDRDKLLTFNMYIGINGC-- 201 (319)
Q Consensus 136 ~~qlelA~~~~~Pv~i-H~r-~a~~~~l~il~~~~~~~~~~i~-H~---------f~g~~~~~~~~l~~g~y~s~sg~-- 201 (319)
++.++.+.+++++|=+ |+- +.+.+++++- +. .+|. |+ =+-+-+.++.+.+.|-.++++..
T Consensus 152 k~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s-~~-----PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~ 225 (313)
T COG2355 152 KELVREMNELGIIIDLSHLSDKTFWDVLDLS-KA-----PVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPA 225 (313)
T ss_pred HHHHHHHHhcCCEEEecccCCccHHHHHhcc-CC-----ceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehh
Confidence 3457899999988864 664 3566666641 11 2233 43 34467889999999988888765
Q ss_pred cccC---h--hh-------HHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHH
Q 020985 202 SLKT---A--EN-------LDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVR 269 (319)
Q Consensus 202 ~~~~---~--~~-------~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~ 269 (319)
.++. . .+ .-+++.++.|.+-++||+-+....| .+-..+..++
T Consensus 226 fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p--------------------------~gled~~~l~ 279 (313)
T COG2355 226 FLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPP--------------------------DGLEDVGKLP 279 (313)
T ss_pred hccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCc--------------------------hhhcChhHHH
Confidence 2331 2 12 1466778999999999998742111 1244566788
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Q 020985 270 QVLEVVAGCKGINDIDQLSRTLYHNTCRVFF 300 (319)
Q Consensus 270 ~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~ 300 (319)
.+.+++.+ +|.+ .++++++.++|+.|+|.
T Consensus 280 ~l~~~L~~-~G~~-e~~i~~i~~~N~lRV~~ 308 (313)
T COG2355 280 NLTAALIE-RGYS-EEEIEKIAGENWLRVLK 308 (313)
T ss_pred HHHHHHHH-cCCC-HHHHHHHHHHhHHHHHH
Confidence 88888866 4899 99999999999999975
No 124
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=95.37 E-value=0.91 Score=43.09 Aligned_cols=125 Identities=11% Similarity=0.076 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc-cc------C
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS-LK------T 205 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~-~~------~ 205 (319)
+-+++.+++|+++|+||..|+-.....+-+.. +.+. .++ -|.-+.+.++.+.+.|.++..+... ++ +
T Consensus 163 ~~~~~iv~~A~~~gl~vasH~d~~~~~v~~a~-~~Gv---~~~--E~p~t~e~a~~a~~~G~~vv~gapn~lrg~s~~g~ 236 (325)
T cd01306 163 ANRSELAALARARGIPLASHDDDTPEHVAEAH-ELGV---VIS--EFPTTLEAAKAARELGLQTLMGAPNVVRGGSHSGN 236 (325)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCChHHHHHHH-HCCC---eec--cCCCCHHHHHHHHHCCCEEEecCcccccCcccccc
Confidence 55788999999999999999965444443433 3332 222 2446889999999999999875321 21 1
Q ss_pred hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHH
Q 020985 206 AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDID 285 (319)
Q Consensus 206 ~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e 285 (319)
...+++++. +. .+.+.||.... ..+..++ .++...+++ .+
T Consensus 237 ~~~~~ll~~-Gv-~~al~SD~~p~------------------------------------sll~~~~-~la~~~gl~-l~ 276 (325)
T cd01306 237 VSARELAAH-GL-LDILSSDYVPA------------------------------------SLLHAAF-RLADLGGWS-LP 276 (325)
T ss_pred HhHHHHHHC-CC-eEEEEcCCCcH------------------------------------hHHHHHH-HHHHHcCCC-HH
Confidence 123455554 22 36899998531 1233333 445556899 99
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 020985 286 QLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 286 ~~~~~~~~N~~rlf~~~~ 303 (319)
++.+.+..|..+.+++..
T Consensus 277 eAl~~aT~nPA~~lGl~d 294 (325)
T cd01306 277 EAVALVSANPARAVGLTD 294 (325)
T ss_pred HHHHHHhHHHHHHcCCCC
Confidence 999999999999999863
No 125
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=95.33 E-value=2 Score=38.56 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=53.7
Q ss_pred CHHHHHHHHHCCCeEeecccc-ccC------------hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCc
Q 020985 182 SAEDRDKLLTFNMYIGINGCS-LKT------------AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSK 248 (319)
Q Consensus 182 ~~~~~~~~l~~g~y~s~sg~~-~~~------------~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~ 248 (319)
....++.+.+.|+.+.|+..- ++. ....++.+... =.+.+.||+-... + +
T Consensus 120 ~~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g-~piiisSdAh~~~--------~-----l--- 182 (237)
T PRK00912 120 NHVLAKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYD-FPLVLTSGAMSCY--------D-----L--- 182 (237)
T ss_pred CHHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcC-CCEEEeCCCCccc--------c-----c---
Confidence 346678888899999888652 211 12234445433 2389999997610 0 1
Q ss_pred ccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 249 KKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 249 ~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.+..+ +..+++..|++ .+++.+.+..|..+++...
T Consensus 183 -----------------~~~~~-~~~l~~~~Gl~-~~~~~~~~~~~~~~i~~~~ 217 (237)
T PRK00912 183 -----------------RSPRE-MIALAELFGME-EDEALKALSYYPESIIKKN 217 (237)
T ss_pred -----------------CCHHH-HHHHHHHcCCC-HHHHHHHHHHhHHHHHHhh
Confidence 12222 33455567999 9999999999988887644
No 126
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=95.16 E-value=0.95 Score=44.84 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHH-----------HHHHHhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADF-----------CAIVERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~-----------l~il~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
+.+++..+ |+++|+|+.+|+-....+. ++.+.+.+.-.++ .+.||..-+.+.++.+.+.|..++..+
T Consensus 216 e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P 294 (455)
T TIGR02022 216 EQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETALLARSGAVAGLCP 294 (455)
T ss_pred HHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHHHHHHcCCeEEECh
Confidence 34666677 6789999999997654443 3444444432334 356999889999999999999999887
Q ss_pred cc-cc--C--hhhHHHHhcCCCCCEEEcCCCCC
Q 020985 201 CS-LK--T--AENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 201 ~~-~~--~--~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.. ++ + ..++++++. -=++-+.||++.
T Consensus 295 ~sn~~lg~g~~pi~~l~~~--Gv~v~lGTD~~~ 325 (455)
T TIGR02022 295 TTEANLGDGIFPAVDFVAA--GGRFGIGSDSHV 325 (455)
T ss_pred hhhccccCCCCCHHHHHHC--CCeEEEECCCCC
Confidence 52 11 1 224566654 236899999753
No 127
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=94.85 E-value=0.46 Score=45.75 Aligned_cols=133 Identities=16% Similarity=0.220 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCCCcEEEEec--cchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeecccc--------c-
Q 020985 135 FEKQFELAYATKLPMFLHMR--EAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCS--------L- 203 (319)
Q Consensus 135 f~~qlelA~~~~~Pv~iH~r--~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~--------~- 203 (319)
+.+.++.|.+.|++|.+|+. .+...+++.+++.... ..+.|+.-.+.+...++.++|+.+++.+.. .
T Consensus 227 l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~~~--~~i~h~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~~~ 304 (404)
T PF07969_consen 227 LEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAARAR--GRIEHAELIDPDDIERMAELGVTASVQPHFLFSWGGEWYE 304 (404)
T ss_dssp HHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHTCC--HEEEEHCBCCHHHHHHHHHHTTEEEECCTHHHHETEETHH
T ss_pred HHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhccc--ceeeccccCCHHHHHHHHHhCCccccChhHhhhccchhhh
Confidence 79999999999999999995 3567788888776532 268899999999999999999999998720 0
Q ss_pred ------c---ChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccc-hHH-HHH
Q 020985 204 ------K---TAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPC-LVR-QVL 272 (319)
Q Consensus 204 ------~---~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~-~l~-~v~ 272 (319)
+ ....+.+++. .=++.+.||+|...+. |. .+. .+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~--Gv~v~~gsD~p~~~~~--------------------------------P~~~~~~~~~ 350 (404)
T PF07969_consen 305 ERLGPERARRIYPIRSLLDA--GVRVALGSDAPVSPPN--------------------------------PFRGIWAAVT 350 (404)
T ss_dssp HHHHHHCGGGBTHHHHHHHC--TTEEEE--TTTTSSCC--------------------------------HHHHHHHHHH
T ss_pred hhhhhHHHHHHhHHHHHHhc--cCceecCcCCcccccC--------------------------------cchhhhhhhc
Confidence 0 0112344443 2479999999962211 11 111 111
Q ss_pred HHHHH-h--------cCCChHHHHHHHHHHHHHHhcCCCCC
Q 020985 273 EVVAG-C--------KGINDIDQLSRTLYHNTCRVFFPQDL 304 (319)
Q Consensus 273 ~~iA~-~--------~~is~~e~~~~~~~~N~~rlf~~~~~ 304 (319)
...+. . ..+| .++..+..+.|.-+.+++...
T Consensus 351 ~~~~~~~~~~~~~~~~~ls-~~eAl~~~T~~~A~~~g~~~~ 390 (404)
T PF07969_consen 351 RQMAGERSGPVLGPEQRLS-LEEALRAYTSNPARALGLEDR 390 (404)
T ss_dssp HHHCHHTHHHCCGGTGSSH-HHHHHHHTTHHHHHHTT-TTT
T ss_pred cccccccccccccccccCC-HHHHHHHHhHHHHHHcCCCCC
Confidence 11111 0 4688 999999999999999887654
No 128
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=94.82 E-value=0.17 Score=51.46 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=67.1
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC-------------HHhHHHHHHHHHhcCCeE
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS-------------LEESKEALAIAETDGRLF 71 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~-------------~~~~~~~~~l~~~~~~i~ 71 (319)
-+||+|+|+..+.+ .+.+...||..++..++. ++.+...++.++..|--+
T Consensus 134 G~ID~HvH~~~P~~-----------------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pvn~ 196 (572)
T PRK13309 134 AGIDTHIHLISPQQ-----------------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVNV 196 (572)
T ss_pred CEEEeecccCCcch-----------------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCCcCE
Confidence 57999999776432 245677899888753322 234555555555544212
Q ss_pred EeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEE
Q 020985 72 CTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFL 151 (319)
Q Consensus 72 ~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~i 151 (319)
...|- ... ....++.++++. -+.+++ +..|+. . -...+.+.++.|.++++||.+
T Consensus 197 g~~gk--g~~----------~~~~~l~el~~a-----Ga~gfk-~~~d~g----~----t~~~L~~aLe~A~~~gv~Vai 250 (572)
T PRK13309 197 GILGK--GNS----------YGRGPLLEQAIA-----GVAGYK-VHEDWG----A----TAAALRHALRVADEVDIQVAV 250 (572)
T ss_pred EEEcC--CCC----------CCHHHHHHHHhc-----CcEEEE-ecCcCC----c----CHHHHHHHHHHHHhcCCEEEE
Confidence 22331 111 112445555542 344553 223432 1 234688888999999999999
Q ss_pred Eeccch--HHHHHHHHhccC
Q 020985 152 HMREAA--ADFCAIVERNKD 169 (319)
Q Consensus 152 H~r~a~--~~~l~il~~~~~ 169 (319)
|++..- ..+-.+++.++.
T Consensus 251 H~d~lnE~g~vE~~~aa~~g 270 (572)
T PRK13309 251 HTDSLNECGYVEDTIDAFEG 270 (572)
T ss_pred eCCccccchhHHHHHHHhCC
Confidence 998532 333334555543
No 129
>PRK08392 hypothetical protein; Provisional
Probab=94.70 E-value=2.5 Score=37.36 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.3
Q ss_pred EeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEe
Q 020985 7 IDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVT 50 (319)
Q Consensus 7 iD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~ 50 (319)
||.|+|..... + ..++++++++|.+.|++.+.+.
T Consensus 1 ~D~H~HT~~sd--~--------~~~~~e~v~~A~~~Gl~~i~iT 34 (215)
T PRK08392 1 MDLHTHTVYSD--G--------IGSVRDNIAEAERKGLRLVGIS 34 (215)
T ss_pred CccccCCCCcC--C--------cCCHHHHHHHHHHcCCCEEEEc
Confidence 68999987632 2 2578999999999999876554
No 130
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=94.64 E-value=1.2 Score=41.28 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHc-----C-CCcEEEEeccchHH-----------HHHHHHhccC------CCcceEEEeCCCCHHHHHHH
Q 020985 133 KYFEKQFELAYA-----T-KLPMFLHMREAAAD-----------FCAIVERNKD------RFTGGVTHSFTGSAEDRDKL 189 (319)
Q Consensus 133 ~vf~~qlelA~~-----~-~~Pv~iH~r~a~~~-----------~l~il~~~~~------~~~~~i~H~f~g~~~~~~~~ 189 (319)
+.++...+++++ . ++|+.+|....... .++.+..... .....+.||..-+.+.+..+
T Consensus 144 ~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~l 223 (333)
T PF01979_consen 144 EELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGMSPIEALDHLGLLEEAIDDGVDLIAHGTHLSDEEIELL 223 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSHHHHHHHHHHHSCHHHHHHHCEEEEEHTTSEHHHHHHH
T ss_pred hhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeeccchhhhccchhhhhhcccccceeeccccCCHHHhhhh
Confidence 446666777777 3 99999999876555 1111111110 01245679988787877777
Q ss_pred HHCCCeEeec
Q 020985 190 LTFNMYIGIN 199 (319)
Q Consensus 190 l~~g~y~s~s 199 (319)
-+.+.++...
T Consensus 224 ~~~~~~~~~~ 233 (333)
T PF01979_consen 224 KETGIGIIHC 233 (333)
T ss_dssp HHHTHEEEEE
T ss_pred hccCCccccc
Confidence 7777776643
No 131
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=93.99 E-value=1.4 Score=41.09 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccc---------h----HHHHHHHHhccCCCcceEE-EeCCCCHHHHHHHHHC--CCe
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREA---------A----ADFCAIVERNKDRFTGGVT-HSFTGSAEDRDKLLTF--NMY 195 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a---------~----~~~l~il~~~~~~~~~~i~-H~f~g~~~~~~~~l~~--g~y 195 (319)
.+-+...||..++.|+|+.+|-... . +.+++=|++.-+ ..++|+ |+-+ ++.++-+.+. +++
T Consensus 117 ~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~~fP-~LKIV~EHiTT--~dav~~v~~~~~nla 193 (344)
T COG0418 117 IEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQRFP-KLKIVLEHITT--KDAVEYVKDANNNLA 193 (344)
T ss_pred HHHHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHhhCC-cceEEEEEecc--HHHHHHHHhcCccee
Confidence 5667788999999999999998532 1 224443333222 247777 8843 2223333333 366
Q ss_pred Eeeccc----------------------cccChhhHHHHhc---CCCCCEEEcCCCCCccccccccccccccccCCCccc
Q 020985 196 IGINGC----------------------SLKTAENLDVVRG---IPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKK 250 (319)
Q Consensus 196 ~s~sg~----------------------~~~~~~~~~~l~~---ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~ 250 (319)
.+++.- +.+..+-++++.. -+-.|++++|||-- .+ ..
T Consensus 194 ATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAP---H~---------------~~ 255 (344)
T COG0418 194 ATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAP---HA---------------RS 255 (344)
T ss_pred eEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCC---Cc---------------cc
Confidence 655421 1233333433322 25669999999842 10 00
Q ss_pred ccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCCCCCcc
Q 020985 251 EKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQDLDST 307 (319)
Q Consensus 251 ~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~~~~~~ 307 (319)
-|-....+-..-+.|..++..++.--+. =. .+.+..-...|..+||++..-|.|
T Consensus 256 ~Ke~~cgcAG~fsap~al~~~AevFE~~--na-L~~LeaF~S~nGp~fY~lp~n~~~ 309 (344)
T COG0418 256 RKESACGCAGIFSAPFALPLYAEVFEEE--NA-LDNLEAFASDNGPKFYGLPRNDKT 309 (344)
T ss_pred ccccccccccccccHhHHHHHHHHHHHh--cH-HHHHHHHHhhcCcceecccCCCce
Confidence 0100000111123444444433332222 24 778889999999999999855543
No 132
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=93.91 E-value=0.24 Score=46.93 Aligned_cols=92 Identities=20% Similarity=0.154 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHCCCeEeecccc--ccCh-----hh-------HHHHhcCCCCCEEEcCCCCCccccccccccccccccCC
Q 020985 181 GSAEDRDKLLTFNMYIGINGCS--LKTA-----EN-------LDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWP 246 (319)
Q Consensus 181 g~~~~~~~~l~~g~y~s~sg~~--~~~~-----~~-------~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~ 246 (319)
-+-+.++.+.+.|-.++++..- +... .+ .-+++.++.|+|=++||+-.....+
T Consensus 214 ltDe~iraia~~GGviGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~------------- 280 (320)
T PF01244_consen 214 LTDEQIRAIAERGGVIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPP------------- 280 (320)
T ss_dssp B-HHHHHHHHHTT-EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHB-------------
T ss_pred CCHHHHHHHHHCCcEEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCC-------------
Confidence 3578889999999999998652 2221 11 1356677999999999995421000
Q ss_pred CcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Q 020985 247 SKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFF 300 (319)
Q Consensus 247 ~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~ 300 (319)
.+-..+..++.+.+.+.+ +|.| .+++.+++..|+.|+|.
T Consensus 281 -------------~gl~~~~~~~~l~~~L~~-rG~s-~~~i~kI~g~N~lRv~~ 319 (320)
T PF01244_consen 281 -------------EGLEDPSDLPNLTEELLK-RGYS-EEDIEKILGGNFLRVLR 319 (320)
T ss_dssp -------------BTBSSGGGHHHHHHHHHH-TTS--HHHHHHHHTHHHHHHHH
T ss_pred -------------CccCCHHHHHHHHHHHHH-CCCC-HHHHHHHHhHhHHHHhc
Confidence 134567899999999987 7999 99999999999999873
No 133
>PRK08609 hypothetical protein; Provisional
Probab=93.88 E-value=5.6 Score=40.72 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=28.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEe
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVT 50 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~ 50 (319)
+.+|.|||.... + +..++++++++|.+.|+..+++.
T Consensus 334 ~~~DlH~HT~~s--D--------g~~sleemv~~A~~~Gl~~i~iT 369 (570)
T PRK08609 334 IQGDLHMHTTWS--D--------GAFSIEEMVEACIAKGYEYMAIT 369 (570)
T ss_pred hcCCccccCCCC--C--------CCCCHHHHHHHHHHCCCCEEEEe
Confidence 457999999742 1 13679999999999999987765
No 134
>PLN02303 urease
Probab=93.69 E-value=0.17 Score=53.22 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecc
Q 020985 132 RKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
...+.+.++.|+++|+||.+|+..
T Consensus 496 pelL~raLe~AkelGVpVaIHAEd 519 (837)
T PLN02303 496 PAAIDNCLDVAEEYDIQVTIHTDT 519 (837)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCc
Confidence 457888999999999999999875
No 135
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=93.59 E-value=7.5 Score=37.68 Aligned_cols=267 Identities=13% Similarity=0.054 Sum_probs=135.8
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC--CCHHhHHHHHHHHHhc---CCeEEeeecC--
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG--GSLEESKEALAIAETD---GRLFCTVGVH-- 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~--~~~~~~~~~~~l~~~~---~~i~~~~GiH-- 77 (319)
-+||.|+|........ + ....++..+.+.+.+.||..++-.. ..+++....++..+++ ++-...+|+|
T Consensus 57 GfID~HvHg~~g~~~~---~--~~~e~~~~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlE 131 (380)
T TIGR00221 57 GFIDIHIHGCGGVDTN---D--ASFETLEIMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHLE 131 (380)
T ss_pred ceeeeeeccccCcCCC---C--CCHHHHHHHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEeee
Confidence 4899999986431110 0 0114566777888889998776543 2345554444433221 1223467777
Q ss_pred -CCCcccccccCCCHHH-----HHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEE
Q 020985 78 -PTRCKEFEESGDPEKH-----FQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFL 151 (319)
Q Consensus 78 -P~~~~~~~~~~~~~~~-----l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~i 151 (319)
|+...... .-..+++ .++++++++. ..+.+.. +-|-- ... . -.++++.+.+.|.-|++
T Consensus 132 GPfi~~~~~-Gah~~~~i~~p~~~~~~~~~~~--~~~~i~~---vTlAP---E~~---~----~~~~i~~l~~~gi~vs~ 195 (380)
T TIGR00221 132 GPFLSPEKK-GAHPPEYIREPDVELFKKFLCE--AGGVITK---VTLAP---EED---Q----HFELIRHLKDAGIIVSA 195 (380)
T ss_pred cCcCChhhc-CCCCHHHhhCcCHHHHHHHHHh--cCCCEEE---EEECC---CCC---C----hHHHHHHHHHCCeEEEe
Confidence 54433210 0011122 2455566542 1122222 22221 101 1 12446777888888875
Q ss_pred -EeccchHHHHHHHHhccCCCcceEEEeCCCCH-------HHHHHHHH-CCCeEeeccc-cccChhhHH-HHhcCCCCCE
Q 020985 152 -HMREAAADFCAIVERNKDRFTGGVTHSFTGSA-------EDRDKLLT-FNMYIGINGC-SLKTAENLD-VVRGIPIERM 220 (319)
Q Consensus 152 -H~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~-------~~~~~~l~-~g~y~s~sg~-~~~~~~~~~-~l~~ip~drl 220 (319)
||--.++++.+.++ .+ ...+-|.||+.. -.+...+. .++|.++=.- +=-.+...+ +.+.-+.+|+
T Consensus 196 GHs~A~~~~~~~a~~-~G---a~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~r~kg~~~~ 271 (380)
T TIGR00221 196 GHTNATYELAKAAFK-AG---ATHATHLYNAMSPIHHREPGVIGAVLDHDDVYTEIIADGIHIHPLNIRLAKKLKGDSKL 271 (380)
T ss_pred eCCCCCHHHHHHHHH-cC---CCeeeeeccCCCCcCCCCCcHHHHHhcCCCcEEEEEcCCCcCCHHHHHHHHHhcCCCcE
Confidence 77655666666554 34 356889999853 34455554 4677776321 101344444 5555577999
Q ss_pred EEcCCCCCccccccccccccccccCCC-cccccccccccCCC-CCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 020985 221 MIETDSPYCEIKNAHAGISFVKSTWPS-KKKEKYDQDSLVKG-RNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRV 298 (319)
Q Consensus 221 LlETD~P~~~~~~~~~~~~~~~~~l~~-~~~~k~~~~~~~~~-~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rl 298 (319)
++=||+--..--| .| +|.-..+.. ...|+.- ..... ...-..+...++.+.+.-+++ .+++.+....|..++
T Consensus 272 ~lvtDa~~~~g~~--~G-~y~l~~~~v~~~~g~~~--~~~g~LAGs~ltl~~~v~~l~~~~~~~-~~eal~~aT~npA~~ 345 (380)
T TIGR00221 272 CLVTDSMAAAGAK--DG-VFIFGGKTVYIREGTCL--DSNGTLAGSSLTMIEGARNLVEFTNIS-LTDAARMSSLNPARA 345 (380)
T ss_pred EEEeccccccCCC--Cc-eEeECCEEEEEECCEEE--cCCCceechhhhHHHHHHHHHHhhCCC-HHHHHHHHhHHHHHH
Confidence 9999974321000 01 111000000 0011100 00000 111134555555555555799 999999999999999
Q ss_pred cCCC
Q 020985 299 FFPQ 302 (319)
Q Consensus 299 f~~~ 302 (319)
|++.
T Consensus 346 lgl~ 349 (380)
T TIGR00221 346 LGID 349 (380)
T ss_pred hCCC
Confidence 9975
No 136
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=93.49 E-value=4 Score=38.36 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc--hHHHHHHHHhccC
Q 020985 92 KHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA--AADFCAIVERNKD 169 (319)
Q Consensus 92 ~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a--~~~~l~il~~~~~ 169 (319)
++.+++.++..+.. .+.++||+-.|-.... .+. .|...++.|++.++++.+|+... ...+.+.+...+.
T Consensus 148 ~~~~~~~~~~~~~~-~~~vvG~dl~g~E~~~---~~~-----~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~l~~ 218 (331)
T PF00962_consen 148 EWAEEIVELASKYP-DKGVVGFDLAGDEDGG---PPL-----KFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILLLGA 218 (331)
T ss_dssp HHHHHHHHHHHHTT-TTTEEEEEEESSTTST---TGG-----GHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHTST-
T ss_pred HHHHHHHHHHhhcc-cceEEEEEecCCcccC---chH-----HHHHHHhhhcccceeecceecccCCcccccchhhhccc
Confidence 55666666665422 3369999888866431 111 18888999999999999999864 3455565555432
Q ss_pred CCcceEEEeCCC--CHHHHHHHHHCCCeEeecccc---c---cC---hhhHHHHhcCCCCCEEEcCCCCCcccccccccc
Q 020985 170 RFTGGVTHSFTG--SAEDRDKLLTFNMYIGINGCS---L---KT---AENLDVVRGIPIERMMIETDSPYCEIKNAHAGI 238 (319)
Q Consensus 170 ~~~~~i~H~f~g--~~~~~~~~l~~g~y~s~sg~~---~---~~---~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~ 238 (319)
.-|-|++.- +++.++.+.+.++-+.+.+.. + .+ --+++.++. -=++-+.||.|-+
T Consensus 219 ---~RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~~~~~hP~~~~~~~--gv~v~i~TDd~~~--------- 284 (331)
T PF00962_consen 219 ---DRIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQLGAVPSYEEHPLRKLLDA--GVPVSINTDDPGV--------- 284 (331)
T ss_dssp ---SEEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSSTGGG-CHHHHHHT--T-EEEE--BSHHH---------
T ss_pred ---eeecchhhhhhhhHHHHHHHHhCCCeeeCCCcCcccceeeecchhHHHHHHHc--CCceeccCCCccc---------
Confidence 348898854 577788888899998887641 1 11 113566653 2248999999863
Q ss_pred ccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 020985 239 SFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRV 298 (319)
Q Consensus 239 ~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rl 298 (319)
+ + .++.+=+..+++..|++ .+++.++. .|+.+.
T Consensus 285 ------~---------------~----~~l~~ey~~~~~~~~l~-~~~l~~l~-~nsi~~ 317 (331)
T PF00962_consen 285 ------F---------------G----TTLSDEYYLAAEAFGLS-LADLKQLA-RNSIEA 317 (331)
T ss_dssp ------H---------------T-----SHHHHHHHHHHHHT---HHHHHHHH-HHHHHC
T ss_pred ------c---------------C----CCcHHHHHHHHHHcCCC-HHHHHHHH-HHHHHH
Confidence 1 0 13777788888888999 99988877 466553
No 137
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=93.28 E-value=2 Score=43.54 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEecc--chHHHHHHHHhccCCC-----cceEEEeCCCCHHHHHHHHHCCCeEeecccc
Q 020985 130 IQRKYFEKQFELAYATKLPMFLHMRE--AAADFCAIVERNKDRF-----TGGVTHSFTGSAEDRDKLLTFNMYIGINGCS 202 (319)
Q Consensus 130 ~Q~~vf~~qlelA~~~~~Pv~iH~r~--a~~~~l~il~~~~~~~-----~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~ 202 (319)
...+-|++.++.|.+.|+||.+|+-. |.+.+++.+++...+. ..-|.|.=--+++.+.++.++|+-+|+.+..
T Consensus 318 ~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~svQP~f 397 (535)
T COG1574 318 LTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQPNF 397 (535)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEeecccc
Confidence 34677999999999999999999973 5778888777665321 2348898888999999999999999987642
Q ss_pred ccC-----------------hhhHHHHhcCCCCCEEEcCCCCCcc
Q 020985 203 LKT-----------------AENLDVVRGIPIERMMIETDSPYCE 230 (319)
Q Consensus 203 ~~~-----------------~~~~~~l~~ip~drlLlETD~P~~~ 230 (319)
... ...+.+++. -=.+-+.||+|-..
T Consensus 398 ~~~~~~~~~~rlG~~r~~~~~p~~~ll~~--G~~la~gSD~Pv~~ 440 (535)
T COG1574 398 LFSDGEWYVDRLGEERASRSYPFRSLLKA--GVPLAGGSDAPVEP 440 (535)
T ss_pred ccccchHHHHhhhhhhhhccCcHHHHHHC--CCeEeccCCCCCCC
Confidence 111 112344444 22378999999843
No 138
>PRK08123 histidinol-phosphatase; Reviewed
Probab=92.64 E-value=8.1 Score=35.43 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=28.7
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEe
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVT 50 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~ 50 (319)
||++|.|+|...-... -...+++++++|.+.|+..+.+.
T Consensus 1 ~m~~D~H~HT~~s~h~--------~~~~~e~~v~~Ai~~Gl~~i~~t 39 (270)
T PRK08123 1 MMKRDGHTHTPFCPHG--------SKDDLEAYIERAIELGFTEITFT 39 (270)
T ss_pred CCccccccCCCCCCCC--------CCCCHHHHHHHHHHcCCcEEEEe
Confidence 6789999999642110 01478999999999999877665
No 139
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=92.30 E-value=0.85 Score=42.97 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=81.8
Q ss_pred HHHHHHHcCCCcEEE-EeccchHHHHHHHHhccCCCcceEEEeC---------CCCHHHHHHHHHCCCeEeecccc--cc
Q 020985 137 KQFELAYATKLPMFL-HMREAAADFCAIVERNKDRFTGGVTHSF---------TGSAEDRDKLLTFNMYIGINGCS--LK 204 (319)
Q Consensus 137 ~qlelA~~~~~Pv~i-H~r~a~~~~l~il~~~~~~~~~~i~H~f---------~g~~~~~~~~l~~g~y~s~sg~~--~~ 204 (319)
+.++...++|+.|=+ |+- .....++++-.. .|-++=|+- +-+-+.++.+.+.|-.++++... +.
T Consensus 158 ~vv~~mn~lGmiiDvSH~s--~~~~~dv~~~s~--~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~~~~~fl~ 233 (309)
T cd01301 158 ELVREMNRLGIIIDLSHLS--ERTFWDVLDISN--APVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYPAFLS 233 (309)
T ss_pred HHHHHHHHcCCEEEcCCCC--HHHHHHHHHhcC--CCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEeeeHHHhC
Confidence 345666777776643 543 223334443322 122222532 23678889999999888887641 21
Q ss_pred ---Chh---hH----HHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHH
Q 020985 205 ---TAE---NL----DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEV 274 (319)
Q Consensus 205 ---~~~---~~----~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~ 274 (319)
... +. -+++.++.|++-++||+-.... ++ .+-..+..++.+.+.
T Consensus 234 ~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~--------------~~------------~gl~~~~~~~~l~~~ 287 (309)
T cd01301 234 PGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGG--------------TP------------GGLEDVSDLPNLTAE 287 (309)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEECcccCCCCC--------------Cc------------cccCCHHHHHHHHHH
Confidence 111 22 3455589999999999865210 00 123456778888888
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHh
Q 020985 275 VAGCKGINDIDQLSRTLYHNTCRV 298 (319)
Q Consensus 275 iA~~~~is~~e~~~~~~~~N~~rl 298 (319)
+.+ +|.| .+++.+++..|+.|+
T Consensus 288 L~~-rG~s-~~~i~~i~g~N~lRv 309 (309)
T cd01301 288 LLE-RGYS-EEEIEKIAGGNFLRV 309 (309)
T ss_pred HHH-cCCC-HHHHHHHHhhchhcC
Confidence 866 7999 999999999999885
No 140
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.92 E-value=3.1 Score=40.71 Aligned_cols=125 Identities=10% Similarity=0.045 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHH--CCC-eEeeccc-cc--cC---h
Q 020985 136 EKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLT--FNM-YIGINGC-SL--KT---A 206 (319)
Q Consensus 136 ~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~--~g~-y~s~sg~-~~--~~---~ 206 (319)
++.++-|.+.++||-+|.-... .+ .+..+.+. ..+-|...-+.+.+..+.+ .|. +....+. .+ +. +
T Consensus 223 ~~~l~~a~~~g~~v~~HA~~~~-g~-~~A~~~g~---~s~~H~~~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~e~~~~ 297 (406)
T COG1228 223 RAVLAAALKAGIPVKAHAHGAD-GI-KLAIRLGA---KSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRELDYK 297 (406)
T ss_pred HHHHHHHHHCCCceEEEecccc-hH-HHHHHhCc---ceehhhhhcCHhHHHHHhhccCCCccccccchhhhhhhcccch
Confidence 7889999999999999998765 22 33333332 3467877778899999999 665 3232222 11 11 1
Q ss_pred hhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcCCChHHH
Q 020985 207 ENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQ 286 (319)
Q Consensus 207 ~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~ 286 (319)
..+.+.+. -=++-+.||.|... . ..++.......++. |++ ++|
T Consensus 298 ~~~~l~~~--GV~vai~TD~~~~~--------------------------------~-~~~l~~~m~l~~~~-gmt-p~E 340 (406)
T COG1228 298 PARKLIDA--GVKVAIGTDHNPGT--------------------------------S-HGSLALEMALAVRL-GMT-PEE 340 (406)
T ss_pred hHHHHHHC--CCEEEEEcCCCCCc--------------------------------h-hhHHHHHHHHHHHc-CCC-HHH
Confidence 12344444 23589999999721 1 34666667666666 499 999
Q ss_pred HHHHHHHHHHHhcCCC
Q 020985 287 LSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 287 ~~~~~~~N~~rlf~~~ 302 (319)
..+.++-|+.+.+|+.
T Consensus 341 aL~a~T~naA~alG~~ 356 (406)
T COG1228 341 ALKAATINAAKALGLA 356 (406)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999999976
No 141
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=90.98 E-value=12 Score=33.95 Aligned_cols=194 Identities=16% Similarity=0.111 Sum_probs=98.5
Q ss_pred EeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCH----------------HhH----HHHHHHHHh
Q 020985 7 IDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSL----------------EES----KEALAIAET 66 (319)
Q Consensus 7 iD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~----------------~~~----~~~~~l~~~ 66 (319)
+|.|+|...-... ..++++++++|.+.|+..+.+.--.+ +++ ..+.++.++
T Consensus 1 ~D~H~Ht~~s~d~---------~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~ 71 (253)
T TIGR01856 1 RDGHSHSPFCAHG---------TDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKE 71 (253)
T ss_pred CCcccCcCCCCCC---------CCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHH
Confidence 5889998542111 26899999999999999776542111 111 223445566
Q ss_pred cC-CeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEee-c--CCCCCC---------CCCCHHHHHH
Q 020985 67 DG-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGEC-G--LDYDRL---------HFCPSEIQRK 133 (319)
Q Consensus 67 ~~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEi-G--LD~~~~---------~~~~~~~Q~~ 133 (319)
|+ ++-..+|+==.+.. ...+.+++++.+.--+--+..|=.+ | .|+... .....+..+.
T Consensus 72 y~~~i~I~~GiE~~~~~---------~~~~~~~~~l~~~~~D~vigSvH~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 142 (253)
T TIGR01856 72 YADKLKILIGLEVDYIP---------GFEDFTKDFLDEYGLDFVIGSVHFLGGIPIDFDAEEFNEGLVSFYGNLEQAQRD 142 (253)
T ss_pred hhCCCeEEEEEEecccc---------chHHHHHHHHHHCCCCeEEEEEEeecCCCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 75 45555565323221 1223344444321001112222222 2 444310 0122345567
Q ss_pred HHHHHHHHHHcCCCc-EEEEeccchHHHHHHHHhccCCCcceEEEeCCC----CHHHHHHHHHCCCeEeeccccc-----
Q 020985 134 YFEKQFELAYATKLP-MFLHMREAAADFCAIVERNKDRFTGGVTHSFTG----SAEDRDKLLTFNMYIGINGCSL----- 203 (319)
Q Consensus 134 vf~~qlelA~~~~~P-v~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g----~~~~~~~~l~~g~y~s~sg~~~----- 203 (319)
.|+.++++++.+..| |+=|. + +++++... .....-.+.. -.+.++.+.+.|..+-++...+
T Consensus 143 Y~~~~~~~i~~~~~~dvlgH~-----D---li~~~~~~-~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~ 213 (253)
T TIGR01856 143 YFESVYDSIQALFKPLVIGHI-----D---LVQKFGPL-FTDVSSFSDEVYELLQRILKLVASQGKALEFNTSGLRKPLE 213 (253)
T ss_pred HHHHHHHHHHcCCCCCCcccH-----h---HHHHhCcc-ccccccccHHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCC
Confidence 788888888876433 44444 3 33333211 0000001110 1233455566799988886422
Q ss_pred ---cChhhHHHHhcCCCCCEEEcCCCCC
Q 020985 204 ---KTAENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 204 ---~~~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.+....+.++..+. +|.++||+..
T Consensus 214 ~~yP~~~il~~~~~~g~-~itlgSDAH~ 240 (253)
T TIGR01856 214 EAYPSKELLNLAKELGI-PLVLGSDAHG 240 (253)
T ss_pred CCCCCHHHHHHHHHcCC-CEEecCCCCC
Confidence 22345577777764 5999999986
No 142
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=90.83 E-value=15 Score=35.08 Aligned_cols=144 Identities=13% Similarity=0.032 Sum_probs=89.8
Q ss_pred CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCC--CcEEEEeccch-------HHHHHHHHhccCCCcceEEEeC
Q 020985 109 KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATK--LPMFLHMREAA-------ADFCAIVERNKDRFTGGVTHSF 179 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~--~Pv~iH~r~a~-------~~~l~il~~~~~~~~~~i~H~f 179 (319)
.++|||-.|-... .+. ..-|..+++.|++.| +|+.+|+.... ..+.+.+ ..+. .-|=|++
T Consensus 162 ~VvGidL~G~E~~--~~~-----~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al-~lg~---~RIGHG~ 230 (345)
T cd01321 162 FIAGFDLVGQEDA--GRP-----LLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDAL-LLNT---KRIGHGF 230 (345)
T ss_pred eEEEEecCCCccC--CCC-----HHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHH-HhCC---CcCcccc
Confidence 4777766663311 111 345788889999999 99999998653 3566666 3432 2266766
Q ss_pred CC--CHHHHHHHHHCCCeEeecccc---cc---C---hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCc
Q 020985 180 TG--SAEDRDKLLTFNMYIGINGCS---LK---T---AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSK 248 (319)
Q Consensus 180 ~g--~~~~~~~~l~~g~y~s~sg~~---~~---~---~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~ 248 (319)
.- +++.++.+.+.|+-+.+.+.. ++ + -.++.+++. -=.+.+.||.|-..
T Consensus 231 ~~~~dp~ll~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPl~~ll~~--Gv~vtinTDDp~~f------------------ 290 (345)
T cd01321 231 ALPKHPLLMDLVKKKNIAIEVCPISNQVLGLVSDLRNHPAAALLAR--GVPVVISSDDPGFW------------------ 290 (345)
T ss_pred ccCcCHHHHHHHHHcCCeEEECcchhhhhccccchhhChHHHHHHC--CCeEEEeCCCcchh------------------
Confidence 54 588888888999888887641 11 1 112344443 12489999999631
Q ss_pred ccccccccccCCCCCccchHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHhc
Q 020985 249 KKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKG---INDIDQLSRTLYHNTCRVF 299 (319)
Q Consensus 249 ~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~---is~~e~~~~~~~~N~~rlf 299 (319)
+. ..+..=+..+++..| ++ .+++.++..+-+.--|
T Consensus 291 ------------~t---~~l~~Ey~~~~~~~g~~~l~-~~~l~~l~~nsi~~sF 328 (345)
T cd01321 291 ------------GA---KGLSHDFYQAFMGLAPADAG-LRGLKQLAENSIRYSA 328 (345)
T ss_pred ------------CC---CCchHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHC
Confidence 00 134455666666778 99 9999887754444434
No 143
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=90.69 E-value=12 Score=33.96 Aligned_cols=138 Identities=14% Similarity=0.027 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCC---------CHHhHHHHHHHHHhcCCeEEeeec----CCCCcccccccCCCHHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGG---------SLEESKEALAIAETDGRLFCTVGV----HPTRCKEFEESGDPEKHFQA 96 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~---------~~~~~~~~~~l~~~~~~i~~~~Gi----HP~~~~~~~~~~~~~~~l~~ 96 (319)
.++++.++.+++.|++.+=+.+. ...+.+.+.+++++++--+.+++. .|.....-++ ...++.++.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~-~~r~~~~~~ 91 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDE-HMRRESLDM 91 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCH-HHHHHHHHH
Confidence 36889999999999987655321 123455566666666532222221 1222100000 001123333
Q ss_pred HHHHHHhc--cCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc--------chHHHHHHHHh
Q 020985 97 LLSLAKEG--IEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE--------AAADFCAIVER 166 (319)
Q Consensus 97 l~~~l~~~--~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~--------a~~~~l~il~~ 166 (319)
+.+.++.. + .-+++.++.....+.......++.-.+.+++..+.|+++|+.+.+|... ...+++++++.
T Consensus 92 ~~~~i~~a~~l-Ga~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~ 170 (275)
T PRK09856 92 IKLAMDMAKEM-NAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALAL 170 (275)
T ss_pred HHHHHHHHHHh-CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHHHHHHHH
Confidence 33333211 1 1234444322111111011123444678999999999999999999842 25788899988
Q ss_pred ccC
Q 020985 167 NKD 169 (319)
Q Consensus 167 ~~~ 169 (319)
.+.
T Consensus 171 ~~~ 173 (275)
T PRK09856 171 VPS 173 (275)
T ss_pred cCC
Confidence 763
No 144
>PRK09248 putative hydrolase; Validated
Probab=90.25 E-value=13 Score=33.36 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=29.3
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG 51 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~ 51 (319)
+++|.|+|.... ..+ ..+++++++++.+.|+..+.+.-
T Consensus 3 ~~~D~H~HT~~s-~~~--------~~~~~e~v~~A~~~G~~~i~iTd 40 (246)
T PRK09248 3 YPVDTHTHTIAS-GHA--------YSTLHENAAEAKQKGLKLFAITD 40 (246)
T ss_pred cceEeCcCCCCC-CCC--------CCCHHHHHHHHHHCCCCEEEECC
Confidence 578999998763 111 25799999999999999877653
No 145
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=89.43 E-value=14 Score=34.54 Aligned_cols=158 Identities=16% Similarity=0.092 Sum_probs=87.4
Q ss_pred HHhHHHHHHHHHhcCCe-EEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCE-EEEEeecCCCCCCC---CCCH
Q 020985 54 LEESKEALAIAETDGRL-FCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKV-VAIGECGLDYDRLH---FCPS 128 (319)
Q Consensus 54 ~~~~~~~~~l~~~~~~i-~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~-~aIGEiGLD~~~~~---~~~~ 128 (319)
.+...++++.+.+++.+ -.+++.+|..+.. +.++.|.++.+ ..+ ..| |+|+.-.... ....
T Consensus 93 ~~~L~~l~~~i~~~~~~~~isi~trpd~l~~--------e~l~~L~~l~~-----~G~~~~i-~lGlQS~~d~~L~~i~R 158 (302)
T TIGR01212 93 VEVLKEMYEQALSYDDVVGLSVGTRPDCVPD--------EVLDLLAEYVE-----RGYEVWV-ELGLQTAHDKTLKKINR 158 (302)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEEecCCcCCH--------HHHHHHHHhhh-----CCceEEE-EEccCcCCHHHHHHHcC
Confidence 45566666666667764 3678889998753 45566655432 123 456 7888854200 0001
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEec-----cc---hHHHHHHHHhccCCCcc-eEEEeCCCCHHHHHHHHHCCCeEeec
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHMR-----EA---AADFCAIVERNKDRFTG-GVTHSFTGSAEDRDKLLTFNMYIGIN 199 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~r-----~a---~~~~l~il~~~~~~~~~-~i~H~f~g~~~~~~~~l~~g~y~s~s 199 (319)
....+-+...++.+++.+..|..|.- +. ..++++.+.+.++.... ..++-+.|++ +.+....|-|--.+
T Consensus 159 g~t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~--L~~~~~~g~~~~~~ 236 (302)
T TIGR01212 159 GHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTK--MAKMYEKGELKTLS 236 (302)
T ss_pred cChHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCH--HHHHHHcCCCCCCC
Confidence 12234467889999999999999963 22 34455666666543111 1334555654 34444556432221
Q ss_pred cccccChhhHHHHhcCCCCCEEEc--CCCCC
Q 020985 200 GCSLKTAENLDVVRGIPIERMMIE--TDSPY 228 (319)
Q Consensus 200 g~~~~~~~~~~~l~~ip~drlLlE--TD~P~ 228 (319)
-. ..-....++++.+|.+.++.- .|.|-
T Consensus 237 ~~-e~~~~~~~~l~~l~~~~~i~Rl~~~~~~ 266 (302)
T TIGR01212 237 LE-EYISLACDFLEHLPPEVVIHRISGDAPR 266 (302)
T ss_pred HH-HHHHHHHHHHHhCCcCeEEEEecCCCCc
Confidence 10 011224578899998877654 44553
No 146
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=89.14 E-value=1.4 Score=42.63 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=66.2
Q ss_pred EeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC-----------HHhH--HHHHHHHHhcCCeEEe
Q 020985 7 IDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS-----------LEES--KEALAIAETDGRLFCT 73 (319)
Q Consensus 7 iD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~-----------~~~~--~~~~~l~~~~~~i~~~ 73 (319)
+|+|+|+-.++ -++.+-.+||..++-=++. |..| .+.++.+..+|--+.+
T Consensus 132 iDtHiHfI~Pq-----------------qi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~g~ 194 (568)
T COG0804 132 IDTHIHFICPQ-----------------QIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPMNIGF 194 (568)
T ss_pred ccceeEEecHH-----------------HHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCceeeEE
Confidence 68888876542 2566778899876644332 2233 4455556666633444
Q ss_pred eecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 74 VGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 74 ~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
+|-= .... -..|.+.++ -|-|||..+. ++. .--......|+.|.+++.-|.||+
T Consensus 195 lgKG--n~s~----------~~~L~Eqi~----------aGa~GlKlHE-DWG---~TpaaI~~~L~VAD~~DvqVaiHt 248 (568)
T COG0804 195 LGKG--NASN----------PAPLAEQIE----------AGAIGLKLHE-DWG---ATPAAIDTCLSVADEYDVQVAIHT 248 (568)
T ss_pred eecC--CCCC----------chhHHHHHh----------hccceeEeec-ccC---CCHHHHHHHHhhhhhhceEEEEee
Confidence 4431 1110 122333332 3567888763 222 223456778999999999999999
Q ss_pred cc-----chHHHHHHHH
Q 020985 154 RE-----AAADFCAIVE 165 (319)
Q Consensus 154 r~-----a~~~~l~il~ 165 (319)
-- -.++++..++
T Consensus 249 DTLNEsGfvEdTi~A~~ 265 (568)
T COG0804 249 DTLNESGFVEDTIAAIK 265 (568)
T ss_pred cccccccchHhHHHHhc
Confidence 42 1355555553
No 147
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=89.08 E-value=2.2 Score=30.13 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=33.6
Q ss_pred eeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC-HHhHHHHHHHHHhc
Q 020985 8 DIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS-LEESKEALAIAETD 67 (319)
Q Consensus 8 D~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~-~~~~~~~~~l~~~~ 67 (319)
|.|+|.....+++ ...++++++++++.|++.+.+.--+ ........++++++
T Consensus 1 dlH~Ht~~S~~~~--------~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~ 53 (67)
T smart00481 1 DLHVHSDYSLLDG--------ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKA 53 (67)
T ss_pred CCccccCCccccc--------cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHc
Confidence 6788886543232 2578999999999999877664322 33444455555554
No 148
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.53 E-value=0.51 Score=41.83 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=27.9
Q ss_pred EEeeccCCCCccccccccCCcCCCCCHH---HHHHHHHHcCCCEEEEeC
Q 020985 6 LIDIAVNFTDGMFKGIYHGKQCHASDIA---TVLSRAWSSGVDRIIVTG 51 (319)
Q Consensus 6 iiD~H~Hl~~~~~~~~~~~~~~h~~~~~---~vl~~~~~~Gv~~~v~~~ 51 (319)
+||.|||+-+.--+| ..+++ .+++++.+.||+.+|..+
T Consensus 1 MIDIH~HIlp~iDDG--------p~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDG--------PKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCC--------CCcHHHHHHHHHHHHHcCceEEeecc
Confidence 589999998764333 13443 468888999999998765
No 149
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=86.95 E-value=26 Score=32.76 Aligned_cols=136 Identities=20% Similarity=0.206 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc--CC--eEEeeecCCCCcccccccCCCHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD--GR--LFCTVGVHPTRCKEFEESGDPEKHFQALLS 99 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~--~~--i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~ 99 (319)
...++++..-+.|++.++++|+ +.++..++++.+.+. .+ ++.++|- ... +..-++-+
T Consensus 26 a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~--~~t----------~eai~lak 93 (299)
T COG0329 26 ALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS--NST----------AEAIELAK 93 (299)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC--CcH----------HHHHHHHH
Confidence 4567888899999999999986 456677777776554 23 4444442 211 12223334
Q ss_pred HHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc------chHHHHHHHHhccCCCcc
Q 020985 100 LAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE------AAADFCAIVERNKDRFTG 173 (319)
Q Consensus 100 ~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~------a~~~~l~il~~~~~~~~~ 173 (319)
..++ -.+-|| -+--.||. .. .|+.+++..-.+|...++|++|-..- -..+++.-|.+.+ .-
T Consensus 94 ~a~~----~Gad~i-l~v~PyY~--k~---~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~---ni 160 (299)
T COG0329 94 HAEK----LGADGI-LVVPPYYN--KP---SQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHP---NI 160 (299)
T ss_pred HHHh----cCCCEE-EEeCCCCc--CC---ChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCC---CE
Confidence 4432 011122 11122332 12 37777777777888789999998842 1344444444422 12
Q ss_pred eEEEeCCCCHHHHHHHHH
Q 020985 174 GVTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 174 ~i~H~f~g~~~~~~~~l~ 191 (319)
+-+--.+|+.+.+.++..
T Consensus 161 vgiKd~~gd~~~~~~~~~ 178 (299)
T COG0329 161 VGVKDSSGDLDRLEEIIA 178 (299)
T ss_pred EEEEeCCcCHHHHHHHHH
Confidence 234555566666555543
No 150
>PRK05588 histidinol-phosphatase; Provisional
Probab=86.57 E-value=4.8 Score=36.49 Aligned_cols=24 Identities=4% Similarity=0.156 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEec
Q 020985 131 QRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 131 Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
-...+++.++.+.+.|+++=|=+.
T Consensus 164 ~~~~~~~il~~~~~~g~~lEINt~ 187 (255)
T PRK05588 164 FKEIIDEILKVLIEKEKVLEINTR 187 (255)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECc
Confidence 457789999999999999988884
No 151
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=86.54 E-value=3.9 Score=37.09 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCcEEEEeccc----hHHHHHHHHhccCCCcceEEEeCCCC--------HHHHHHHHH-CCCeEeeccc
Q 020985 136 EKQFELAYATKLPMFLHMREA----AADFCAIVERNKDRFTGGVTHSFTGS--------AEDRDKLLT-FNMYIGINGC 201 (319)
Q Consensus 136 ~~qlelA~~~~~Pv~iH~r~a----~~~~l~il~~~~~~~~~~i~H~f~g~--------~~~~~~~l~-~g~y~s~sg~ 201 (319)
...|+.+.+.|+||+|=|..+ .++.++++++.+. ..-+++||.++- ...+..+-+ .|+-+|+|.-
T Consensus 103 ~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~-~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDH 180 (241)
T PF03102_consen 103 LPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGN-EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDH 180 (241)
T ss_dssp HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT---EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-
T ss_pred HHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCC-CCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCC
Confidence 345788888999999999865 4566777855543 345688999872 233344433 4888888864
No 152
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=85.43 E-value=3 Score=34.78 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=37.3
Q ss_pred EeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcC-CeEEeeec
Q 020985 7 IDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAETDG-RLFCTVGV 76 (319)
Q Consensus 7 iD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~-~i~~~~Gi 76 (319)
||.|+|......+| ..++++++++|.+.|++.+.+.-- +...+....+.++..+ .+++++=+
T Consensus 1 iDlH~HT~~s~~dg--------~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 1 IDLHVHTKYSILDG--------KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp EEEEB--TTTSSTS--------SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCccccccCcchhh--------cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 79999997642222 258999999999999997766532 3344444455555433 23444433
No 153
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=85.14 E-value=16 Score=34.75 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=41.1
Q ss_pred HHHHHHHcCCCcEEEEeccc----hHHHHHHHHhccCCC-cceEEEeCCC--------CHHHHHHHHH-CCCeEeecc
Q 020985 137 KQFELAYATKLPMFLHMREA----AADFCAIVERNKDRF-TGGVTHSFTG--------SAEDRDKLLT-FNMYIGING 200 (319)
Q Consensus 137 ~qlelA~~~~~Pv~iH~r~a----~~~~l~il~~~~~~~-~~~i~H~f~g--------~~~~~~~~l~-~g~y~s~sg 200 (319)
..|+.+.+.++||+|=+.-+ ....++.+++.+... .-+++||-++ +...+..+-+ .++-+++|.
T Consensus 124 pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~Sd 201 (329)
T TIGR03569 124 PLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSD 201 (329)
T ss_pred HHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECC
Confidence 34777778899999999765 345567777665321 2457899886 3444444443 366666664
No 154
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=84.90 E-value=28 Score=31.11 Aligned_cols=134 Identities=10% Similarity=-0.013 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCC--CCccc---ccccCCCHHHHHHHH---HHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHP--TRCKE---FEESGDPEKHFQALL---SLA 101 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP--~~~~~---~~~~~~~~~~l~~l~---~~l 101 (319)
.++++.++.+++.|.+.+=+......+...+.++++++.--+.+++..+ |.... ....+..++..+.++ +++
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 93 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYA 93 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHH
Confidence 4788999999999998775543222345566677777653334443332 11000 000000012223333 333
Q ss_pred HhccCCCCEEEEEeecCCCCCCCCCCHHHH----HHHHHHHHHHHHcCCCcEEEEec----------cchHHHHHHHHhc
Q 020985 102 KEGIEKGKVVAIGECGLDYDRLHFCPSEIQ----RKYFEKQFELAYATKLPMFLHMR----------EAAADFCAIVERN 167 (319)
Q Consensus 102 ~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q----~~vf~~qlelA~~~~~Pv~iH~r----------~a~~~~l~il~~~ 167 (319)
.+ + ..+++.+ ..|-+.. . .+.+.. .+.+++..+.|+++|+.+.++.. ....++++++++.
T Consensus 94 ~~-l-g~~~i~~-~~g~~~~--~-~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~~v 167 (254)
T TIGR03234 94 RA-L-GCPQVNC-LAGKRPA--G-VSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVIDDV 167 (254)
T ss_pred HH-h-CCCEEEE-CcCCCCC--C-CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHHHh
Confidence 32 1 2234444 2453321 1 122222 35688889999999999999963 2357778888877
Q ss_pred cC
Q 020985 168 KD 169 (319)
Q Consensus 168 ~~ 169 (319)
..
T Consensus 168 ~~ 169 (254)
T TIGR03234 168 GR 169 (254)
T ss_pred CC
Confidence 53
No 155
>PRK07945 hypothetical protein; Provisional
Probab=84.67 E-value=37 Score=32.27 Aligned_cols=82 Identities=12% Similarity=-0.070 Sum_probs=52.3
Q ss_pred HHHHHHHHHCCCeEeeccccc---cChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccC
Q 020985 183 AEDRDKLLTFNMYIGINGCSL---KTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLV 259 (319)
Q Consensus 183 ~~~~~~~l~~g~y~s~sg~~~---~~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~ 259 (319)
.+.++.+.+.|.-+-++...+ .+....+.++..+. ++.+.||+...
T Consensus 248 ~~i~~a~~e~g~~lEINt~~~r~~P~~~il~~a~e~G~-~vtigSDAH~p------------------------------ 296 (335)
T PRK07945 248 EAVFAACREHGTAVEINSRPERRDPPTRLLRLALDAGC-LFSIDTDAHAP------------------------------ 296 (335)
T ss_pred HHHHHHHHHhCCEEEEeCCCCCCCChHHHHHHHHHcCC-eEEecCCCCCh------------------------------
Confidence 455677777899998886532 22345566777665 59999999861
Q ss_pred CCCCccchHHHHHHHHHHhcCCChHHHHHHHH-HHHHHHhcC
Q 020985 260 KGRNEPCLVRQVLEVVAGCKGINDIDQLSRTL-YHNTCRVFF 300 (319)
Q Consensus 260 ~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~-~~N~~rlf~ 300 (319)
+.=.++.. ...+|+-.|++ .+.+.... .++++.++.
T Consensus 297 ---~~v~~~~~-~~~~a~~~g~~-~~~i~n~~~~~~~~~~~~ 333 (335)
T PRK07945 297 ---GQLDWLGY-GCERAEEAGVP-ADRIVNTWPADRLLAWTG 333 (335)
T ss_pred ---hhcchHHH-HHHHHHHcCCC-HHHcccCCCHHHHHHHHc
Confidence 00013344 44444556888 88887777 677777654
No 156
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=84.42 E-value=20 Score=32.57 Aligned_cols=169 Identities=14% Similarity=0.078 Sum_probs=89.9
Q ss_pred HHcCCCEEEEeCCCHHhHHHHHHHHHhcCC-eEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecC
Q 020985 40 WSSGVDRIIVTGGSLEESKEALAIAETDGR-LFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGL 118 (319)
Q Consensus 40 ~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~-i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGL 118 (319)
+..|++.++-.+..+...+.+++.+..|-. +..+.|-+.-+.. +.+++..++..+ ++-.+.-|=.-+
T Consensus 10 R~~GlT~v~Dkglg~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~---------~~l~eki~l~~~---~gV~v~~GGtl~ 77 (244)
T PF02679_consen 10 RSRGLTMVIDKGLGLRYLEDLLESAGDYIDFLKFGWGTSALYPE---------EILKEKIDLAHS---HGVYVYPGGTLF 77 (244)
T ss_dssp -SSS-EEEEESS--HHHHHHHHHHHGGG-SEEEE-TTGGGGSTC---------HHHHHHHHHHHC---TT-EEEE-HHHH
T ss_pred CCCCcEEEecCCCCHHHHHHHHHHhhhhccEEEecCceeeecCH---------HHHHHHHHHHHH---cCCeEeCCcHHH
Confidence 457898888899999999999999988854 5577777655433 456666666653 333344442211
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc----hHHHHHHHHhccCCCcceEEEeCCC------------C
Q 020985 119 DYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA----AADFCAIVERNKDRFTGGVTHSFTG------------S 182 (319)
Q Consensus 119 D~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a----~~~~l~il~~~~~~~~~~i~H~f~g------------~ 182 (319)
. ...+...|...++.|+++|...+==+-.. .++-.++++......-+++--...- -
T Consensus 78 E--------~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~ 149 (244)
T PF02679_consen 78 E--------VAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEEL 149 (244)
T ss_dssp H--------HHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHH
T ss_pred H--------HHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHH
Confidence 1 23456678999999999999876433322 3444455554432111222111111 1
Q ss_pred HHHHHHHHHCCCeE-eeccc------cccC------hhhHHHHhcCCCCCEEEcCCCCC
Q 020985 183 AEDRDKLLTFNMYI-GINGC------SLKT------AENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 183 ~~~~~~~l~~g~y~-s~sg~------~~~~------~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.+.+++.++.|.+. =+-+. ++.. ..+.+++..+|++||++|-..|-
T Consensus 150 i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~ 208 (244)
T PF02679_consen 150 IEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKE 208 (244)
T ss_dssp HHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHH
T ss_pred HHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHh
Confidence 45566677778543 22221 2321 22347889999999999976653
No 157
>PRK06361 hypothetical protein; Provisional
Probab=84.15 E-value=5 Score=35.19 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=63.3
Q ss_pred EEEeCCCCHHHHHHHHHCCCeEeeccc-c--ccChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccc
Q 020985 175 VTHSFTGSAEDRDKLLTFNMYIGINGC-S--LKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKE 251 (319)
Q Consensus 175 i~H~f~g~~~~~~~~l~~g~y~s~sg~-~--~~~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~ 251 (319)
+-|=..-..+.++.+.+.|+|+.++.. . ..+....+++++.... +++.||+-. +
T Consensus 117 laHpd~~~~~~~~~~~~~~~~lEin~~~~~~~~~~~~l~~a~~~gi~-vv~~SDaH~--~-------------------- 173 (212)
T PRK06361 117 LAHPGLITEEEAELAAENGVFLEITARKGHSLTNGHVARIAREAGAP-LVINTDTHA--P-------------------- 173 (212)
T ss_pred ecCcchhhHHHHHHHHHcCeEEEEECCCCcccchHHHHHHHHHhCCc-EEEECCCCC--H--------------------
Confidence 335433346678888889999999852 1 1233445666666654 899999974 1
Q ss_pred cccccccCCCCCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCC
Q 020985 252 KYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFP 301 (319)
Q Consensus 252 k~~~~~~~~~~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~ 301 (319)
..... ...+..+++-.|++ .+++..++.+|..++++.
T Consensus 174 -----------~d~~~-~~~~~~i~~~~gl~-~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 174 -----------SDLIT-YEFARKVALGAGLT-EKELEEALENNPKLLLKR 210 (212)
T ss_pred -----------HHHHH-HHHHHHHHcCCCCC-HHHHHHHHHHhHHHHHHh
Confidence 11122 46677777878999 999999999999998764
No 158
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=84.09 E-value=37 Score=31.72 Aligned_cols=136 Identities=16% Similarity=0.108 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc--CCeEEeeecCCCCcccccccCCCHHHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD--GRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLA 101 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~--~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l 101 (319)
.+.++++.+...||+.+++.|+ +.++..++++.+.+. +++-..+|+-. ... +.++.... +
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~---------~~i~~~~~-a 97 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTA---------QAIEYAQA-A 97 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHH---------HHHHHHHH-H
Confidence 4567788888899999998875 466777777765432 23322334422 221 33433332 2
Q ss_pred HhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc---hHHHHHHHH-hccCCCcce-EE
Q 020985 102 KEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA---AADFCAIVE-RNKDRFTGG-VT 176 (319)
Q Consensus 102 ~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a---~~~~l~il~-~~~~~~~~~-i~ 176 (319)
++ -.+.+| -+--+||. . . .|+.++..+-++|...++||+|..+-. ..+++.-|. +.+ ++ -+
T Consensus 98 ~~----~Gadav-~~~pP~y~-~-~---~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~p----ni~gi 163 (303)
T PRK03620 98 ER----AGADGI-LLLPPYLT-E-A---PQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCP----NLVGF 163 (303)
T ss_pred HH----hCCCEE-EECCCCCC-C-C---CHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCC----CEEEE
Confidence 21 112233 33444443 1 2 356677777777888899999987432 223333333 332 22 23
Q ss_pred EeCCCCHHHHHHHHH
Q 020985 177 HSFTGSAEDRDKLLT 191 (319)
Q Consensus 177 H~f~g~~~~~~~~l~ 191 (319)
.--+|+...+.++++
T Consensus 164 K~s~~d~~~~~~~~~ 178 (303)
T PRK03620 164 KDGVGDIELMQRIVR 178 (303)
T ss_pred EeCCCCHHHHHHHHH
Confidence 344566666666653
No 159
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.78 E-value=34 Score=31.11 Aligned_cols=137 Identities=11% Similarity=0.041 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCC-----------CHHhHHHHHHHHHhcCCeEE--eeecCCCCcccccccCCCHHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGG-----------SLEESKEALAIAETDGRLFC--TVGVHPTRCKEFEESGDPEKHFQA 96 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~-----------~~~~~~~~~~l~~~~~~i~~--~~GiHP~~~~~~~~~~~~~~~l~~ 96 (319)
.++++.++.+++.|.+.+=+... ++++...+.++.+++.--++ +.+.|....-...+....++.++.
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~ 100 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEI 100 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHH
Confidence 36788999999999987765421 34556666677777653232 334453111000000001123333
Q ss_pred HHHHHHhc--cCCCCEEEEEeecCCCCC-CC-CCCHHHHHHHHHHHHHHHHcCCCcEEEEecc-----chHHHHHHHHhc
Q 020985 97 LLSLAKEG--IEKGKVVAIGECGLDYDR-LH-FCPSEIQRKYFEKQFELAYATKLPMFLHMRE-----AAADFCAIVERN 167 (319)
Q Consensus 97 l~~~l~~~--~~~~~~~aIGEiGLD~~~-~~-~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~-----a~~~~l~il~~~ 167 (319)
+++.++.. +. .+++.++ |.+... .. ...++.-.+.|+..+++|+++|+.+.+|... ...++++++++.
T Consensus 101 ~~~~i~~a~~lG-~~~i~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v 177 (283)
T PRK13209 101 MRKAIQLAQDLG-IRVIQLA--GYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYL 177 (283)
T ss_pred HHHHHHHHHHcC-CCEEEEC--CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHh
Confidence 43333221 22 2333332 322111 00 0112333567899999999999999999853 346788888877
Q ss_pred cC
Q 020985 168 KD 169 (319)
Q Consensus 168 ~~ 169 (319)
+.
T Consensus 178 ~~ 179 (283)
T PRK13209 178 NS 179 (283)
T ss_pred CC
Confidence 53
No 160
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=83.21 E-value=10 Score=35.22 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHH--------------hHHHHHHHHHh-cCC-eEEeeecCCCCcccccccCCCHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLE--------------ESKEALAIAET-DGR-LFCTVGVHPTRCKEFEESGDPEKHF 94 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~--------------~~~~~~~l~~~-~~~-i~~~~GiHP~~~~~~~~~~~~~~~l 94 (319)
.+.+.|.++.++||+.++++..++. ....++++.++ ++. +..+++.||..-.+... .+..+
T Consensus 75 ~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~---~~~d~ 151 (281)
T TIGR00677 75 MIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAES---VELDL 151 (281)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCC---HHHHH
Confidence 5677888999999999998876541 12233444443 443 66778888864322111 11234
Q ss_pred HHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEE
Q 020985 95 QALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT--KLPMF 150 (319)
Q Consensus 95 ~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~--~~Pv~ 150 (319)
+.|.+-+ +.|-||.-.. .--..+.|.+.++.+++. ++||+
T Consensus 152 ~~L~~Ki-------------~aGA~f~iTQ---~~Fd~~~~~~f~~~~~~~gi~~PIi 193 (281)
T TIGR00677 152 KYLKEKV-------------DAGADFIITQ---LFYDVDNFLKFVNDCRAIGIDCPIV 193 (281)
T ss_pred HHHHHHH-------------HcCCCEeecc---ceecHHHHHHHHHHHHHcCCCCCEE
Confidence 4444332 3577764211 112235567777777765 78875
No 161
>PRK02925 glucuronate isomerase; Reviewed
Probab=82.60 E-value=1.2 Score=44.12 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=27.8
Q ss_pred CCCcEEeeccCCCCccccccccCCcCCCCCHHHHH--------HHHHHcCCCEEEEe
Q 020985 2 ATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVL--------SRAWSSGVDRIIVT 50 (319)
Q Consensus 2 ~~m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl--------~~~~~~Gv~~~v~~ 50 (319)
.+|+|||-|||+.+..+. .++. ..++.++. +.|+.+||.--.+.
T Consensus 24 ~~lPIiDyH~Hl~p~~ia---en~~--F~n~telwl~gDHYkwR~Mra~GV~e~~IT 75 (466)
T PRK02925 24 KDLPIIDYHCHLDPKEIA---ENKP--FKNITELWLKGDHYKWRAMRSNGVDEELIT 75 (466)
T ss_pred hcCceeCCCCCCCHHHHh---ccCC--CCCHHHHhccCccHHHHHHHHcCCCHHHcc
Confidence 468999999999885332 1111 13444433 67899999864443
No 162
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=81.83 E-value=9.3 Score=35.75 Aligned_cols=103 Identities=11% Similarity=0.197 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHh--------HHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEE--------SKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAK 102 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~--------~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~ 102 (319)
.+.+.|.++.+.||+.++++..++-. ...++++.++......+++.||..-... . ..+..++.|++-+
T Consensus 98 ~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp~~-~--~~~~dl~~Lk~K~- 173 (296)
T PRK09432 98 ELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEA-K--SAQADLINLKRKV- 173 (296)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCCCC-C--CHHHHHHHHHHHH-
Confidence 56677889999999999999766321 1245556665544445677777422111 1 1123444444433
Q ss_pred hccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCC--CcEEEE
Q 020985 103 EGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATK--LPMFLH 152 (319)
Q Consensus 103 ~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~--~Pv~iH 152 (319)
+.|-||.- +..--..+.|.+.++.+++.| +||+.=
T Consensus 174 ------------~aGA~~~i---TQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~G 210 (296)
T PRK09432 174 ------------DAGANRAI---TQFFFDVESYLRFRDRCVSAGIDVEIVPG 210 (296)
T ss_pred ------------HcCCCeee---cccccchHHHHHHHHHHHHcCCCCCEEee
Confidence 33556532 111122456788888888776 777643
No 163
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=81.49 E-value=10 Score=34.84 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHH------------hHHHHHHHHHh-cCCeEEeeecCCCCcccccccCCCHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLE------------ESKEALAIAET-DGRLFCTVGVHPTRCKEFEESGDPEKHFQAL 97 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~------------~~~~~~~l~~~-~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l 97 (319)
.+.+.|.++...||+.+++++.++. +...++++.++ ++.+..+++.||..-.... ..++.++.|
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~---~~~~~~~~L 150 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAP---NLEEDIENL 150 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCC---CHHHHHHHH
Confidence 4667788899999999987765443 23334444444 4666677777776322111 011334444
Q ss_pred HHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEE
Q 020985 98 LSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT--KLPMF 150 (319)
Q Consensus 98 ~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~--~~Pv~ 150 (319)
.+-+ +.|-||.-.. . --..+.|.+.++.+++. ++||+
T Consensus 151 ~~K~-------------~aGA~f~iTQ-~--~fd~~~~~~~~~~~~~~gi~~PIi 189 (272)
T TIGR00676 151 KRKV-------------DAGADYAITQ-L--FFDNDDYYRFVDRCRAAGIDVPII 189 (272)
T ss_pred HHHH-------------HcCCCeEeec-c--ccCHHHHHHHHHHHHHcCCCCCEe
Confidence 4333 3455654211 1 11235577777777766 56655
No 164
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=81.48 E-value=44 Score=30.76 Aligned_cols=135 Identities=22% Similarity=0.233 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCC-------HHhHHHHHHHHHhc--CC--eEEeeecCCCCcccccccCCCHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGS-------LEESKEALAIAETD--GR--LFCTVGVHPTRCKEFEESGDPEKHFQALLS 99 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~-------~~~~~~~~~l~~~~--~~--i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~ 99 (319)
...+.++..-+.|++.+++.|+. .++...+++++.+. ++ ++.++|-.. .. +.++..+
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~s--t~---------~~i~~a~- 90 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANS--TE---------EAIELAR- 90 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSS--HH---------HHHHHHH-
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchh--HH---------HHHHHHH-
Confidence 34567888889999999998764 55667777765543 34 445555432 11 3333333
Q ss_pred HHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCCCcc
Q 020985 100 LAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDRFTG 173 (319)
Q Consensus 100 ~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~~~~ 173 (319)
.+++ -.+-++ -+...|+.. . .|+.+++..-++|...++||+|+..-. ..+++.-|.+. +.
T Consensus 91 ~a~~----~Gad~v-~v~~P~~~~--~---s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~----~n 156 (289)
T PF00701_consen 91 HAQD----AGADAV-LVIPPYYFK--P---SQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKI----PN 156 (289)
T ss_dssp HHHH----TT-SEE-EEEESTSSS--C---CHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTS----TT
T ss_pred HHhh----cCceEE-EEecccccc--c---hhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcC----Cc
Confidence 2332 112233 334455431 1 356688888888888999999998531 22333333333 23
Q ss_pred e-EEEeCCCCHHHHHHHHH
Q 020985 174 G-VTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 174 ~-i~H~f~g~~~~~~~~l~ 191 (319)
+ -+.--+++.....+++.
T Consensus 157 v~giK~s~~~~~~~~~~~~ 175 (289)
T PF00701_consen 157 VVGIKDSSGDLERLIQLLR 175 (289)
T ss_dssp EEEEEESSSBHHHHHHHHH
T ss_pred EEEEEcCchhHHHHHHHhh
Confidence 3 33444566666666554
No 165
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=81.46 E-value=45 Score=30.92 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc--CC--eEEeeecCCCCcccccccCCCHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD--GR--LFCTVGVHPTRCKEFEESGDPEKHFQALLS 99 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~--~~--i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~ 99 (319)
.+..+++.+.+.||+.+++.|+ +.++...+++.+.+. .+ ++..+| + . .. +.++..+
T Consensus 27 ~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~-~-t~---------~ai~~a~- 93 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-G-N-TS---------DAIEIAR- 93 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-c-c-HH---------HHHHHHH-
Confidence 4567888999999999998875 466777777765543 22 455555 2 2 21 3333333
Q ss_pred HHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc---hHHHHHHHHh-ccCCCcceE
Q 020985 100 LAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA---AADFCAIVER-NKDRFTGGV 175 (319)
Q Consensus 100 ~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a---~~~~l~il~~-~~~~~~~~i 175 (319)
..++ -.+-++ -+--+||.. . .|+.+++..-++|...++||+|..+-. ..+++.-|.+ .+ .-+-
T Consensus 94 ~a~~----~Gadav-~~~pP~y~~--~---s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~---nvvg 160 (296)
T TIGR03249 94 LAEK----AGADGY-LLLPPYLIN--G---EQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCP---NLVG 160 (296)
T ss_pred HHHH----hCCCEE-EECCCCCCC--C---CHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCC---CEEE
Confidence 2221 112233 233344421 1 356667777777777899999886422 2333333332 32 1122
Q ss_pred EEeCCCCHHHHHHHHH
Q 020985 176 THSFTGSAEDRDKLLT 191 (319)
Q Consensus 176 ~H~f~g~~~~~~~~l~ 191 (319)
+-.-+|+.+...+++.
T Consensus 161 iKds~~d~~~~~~~~~ 176 (296)
T TIGR03249 161 FKDGIGDMEQMIEITQ 176 (296)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 3333567666666654
No 166
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=81.28 E-value=24 Score=32.97 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCC-CCHHHHHHHHHCC-CeE-eeccc-cc-c-C
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFT-GSAEDRDKLLTFN-MYI-GINGC-SL-K-T 205 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~-g~~~~~~~~l~~g-~y~-s~sg~-~~-~-~ 205 (319)
...++++++..++.+.|+++|+.......++.+.+.+.+ ++++-. -+...+++.+..+ +.. ++... .+ . +
T Consensus 207 ~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d----~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt 282 (330)
T cd03465 207 LPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGAD----VFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGS 282 (330)
T ss_pred hHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCC----eEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCC
Confidence 556788888888889999999998888889999887632 444332 2777888877532 222 23332 22 1 2
Q ss_pred h-----hhHHHHhcCCC--CCEEEcCCCCC
Q 020985 206 A-----ENLDVVRGIPI--ERMMIETDSPY 228 (319)
Q Consensus 206 ~-----~~~~~l~~ip~--drlLlETD~P~ 228 (319)
. +.+++++.+.. .++++-+++..
T Consensus 283 ~eei~~~v~~~l~~~~~~~~~~il~~gc~i 312 (330)
T cd03465 283 PEEIKEEVKELLEKLLKGGGGYILSSGCEI 312 (330)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEeCCCCC
Confidence 1 23467776643 78999999865
No 167
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=81.11 E-value=44 Score=30.53 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc--CCeEEeeecCCCCcccccccCCCHHHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD--GRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLA 101 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~--~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l 101 (319)
.+.+.++.+.+.|++.+++.|+ +.++..++++.+.+. +++-..+|+-..... +.++ +-+.+
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~---------~~i~-~a~~a 88 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTR---------EAIE-LARHA 88 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHH---------HHHH-HHHHH
Confidence 4567788888899999998876 356667777665443 244445565433221 2222 22333
Q ss_pred HhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCCCcce-
Q 020985 102 KEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDRFTGG- 174 (319)
Q Consensus 102 ~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~~~~~- 174 (319)
++ -.+.+| -+...++.. ..|..+++..-++|...++||+|+..-. ..+++.-|.+. +++
T Consensus 89 ~~----~Gad~v-~v~pP~y~~-----~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~----~~v~ 154 (281)
T cd00408 89 EE----AGADGV-LVVPPYYNK-----PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEH----PNIV 154 (281)
T ss_pred HH----cCCCEE-EECCCcCCC-----CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcC----CCEE
Confidence 32 122233 234444321 1356777777788888899999986432 23333333332 232
Q ss_pred EEEeCCCCHHHHHHHHHC
Q 020985 175 VTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 175 i~H~f~g~~~~~~~~l~~ 192 (319)
-+..-+++.....+++..
T Consensus 155 giK~s~~d~~~~~~~~~~ 172 (281)
T cd00408 155 GIKDSSGDLDRLTRLIAL 172 (281)
T ss_pred EEEeCCCCHHHHHHHHHh
Confidence 234445677777666653
No 168
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=81.08 E-value=42 Score=30.24 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=27.0
Q ss_pred EEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEe
Q 020985 6 LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVT 50 (319)
Q Consensus 6 iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~ 50 (319)
.+|.|+|...- .| ..++.+.++++.+.|...+.+.
T Consensus 2 ~~D~H~HT~~s--dg--------~~~~~e~~~~A~~~g~~~~~iT 36 (237)
T COG1387 2 KIDLHTHTVFS--DG--------EATPEEMVEAAIELGLEYIAIT 36 (237)
T ss_pred CcccccCcccc--cC--------CCCHHHHHHHHHHcCCeEEEEe
Confidence 57999999764 22 2578888999999999877654
No 169
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=80.15 E-value=50 Score=30.56 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc--CC--eEEeeecCCCCcccccccCCCHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD--GR--LFCTVGVHPTRCKEFEESGDPEKHFQALLS 99 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~--~~--i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~ 99 (319)
.+..+++.+.+.||+.+++.|+ +.++..++++.+.+. ++ ++.++| . ... +.++.. +
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~-~t~---------~~i~~a-~ 88 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--Y-GTA---------TAIAYA-Q 88 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--C-CHH---------HHHHHH-H
Confidence 4567888889999999998875 456777777655443 23 444444 1 221 333322 2
Q ss_pred HHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc---hHHHHHHHHh-ccCCCcce-
Q 020985 100 LAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA---AADFCAIVER-NKDRFTGG- 174 (319)
Q Consensus 100 ~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a---~~~~l~il~~-~~~~~~~~- 174 (319)
.+++ -.+-++ -+--.+|. . . .|..+++..-++|...++||+|..+-. ..+++.-|.+ . +++
T Consensus 89 ~a~~----~Gad~v-~~~pP~y~-~-~---~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~----pniv 154 (289)
T cd00951 89 AAEK----AGADGI-LLLPPYLT-E-A---PQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERC----PNLV 154 (289)
T ss_pred HHHH----hCCCEE-EECCCCCC-C-C---CHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcC----CCEE
Confidence 2321 112233 23444442 1 2 355666666777777899999987422 1233332222 2 232
Q ss_pred EEEeCCCCHHHHHHHHH
Q 020985 175 VTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 175 i~H~f~g~~~~~~~~l~ 191 (319)
-+.--+|+.....++..
T Consensus 155 giKds~~d~~~~~~~~~ 171 (289)
T cd00951 155 GFKDGVGDIELMRRIVA 171 (289)
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 23334566666666544
No 170
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=79.88 E-value=46 Score=29.95 Aligned_cols=144 Identities=9% Similarity=0.018 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCcc--c----ccccCCCHHH---HHHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCK--E----FEESGDPEKH---FQALLSL 100 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~--~----~~~~~~~~~~---l~~l~~~ 100 (319)
-++++.++++++.|.+.+=+.+....+.+.+.++.+++.=-+++.++.+.... . ..+ ...++. +++..++
T Consensus 15 ~~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 93 (258)
T PRK09997 15 YDFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIP-GREEEFRDGVAAAIRY 93 (258)
T ss_pred CCHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCC-CcHHHHHHHHHHHHHH
Confidence 46888999999999987765543334566677777776522232222111100 0 000 001122 3333333
Q ss_pred HHhccCCCCEEEEEeecCCCCCCCCCC---HHHHHHHHHHHHHHHHcCCCcEEEEec----------cchHHHHHHHHhc
Q 020985 101 AKEGIEKGKVVAIGECGLDYDRLHFCP---SEIQRKYFEKQFELAYATKLPMFLHMR----------EAAADFCAIVERN 167 (319)
Q Consensus 101 l~~~~~~~~~~aIGEiGLD~~~~~~~~---~~~Q~~vf~~qlelA~~~~~Pv~iH~r----------~a~~~~l~il~~~ 167 (319)
.++ +.- +++.+ -.|-. ..+... ++.=.+.+.+..+.|++.|+.+.+|.. ....++++++++.
T Consensus 94 a~~-lga-~~i~~-~~g~~--~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~~v 168 (258)
T PRK09997 94 ARA-LGN-KKINC-LVGKT--PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDV 168 (258)
T ss_pred HHH-hCC-CEEEE-CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHHHHHHh
Confidence 332 222 23222 23311 111111 122245678888999999999999863 2246778888887
Q ss_pred cCCCcceEE---EeC
Q 020985 168 KDRFTGGVT---HSF 179 (319)
Q Consensus 168 ~~~~~~~i~---H~f 179 (319)
..+..++++ |.+
T Consensus 169 ~~~~v~l~~D~~h~~ 183 (258)
T PRK09997 169 GCCNLKIQYDIYHMQ 183 (258)
T ss_pred CCCCEEEEeEHHHhh
Confidence 543334333 654
No 171
>TIGR03586 PseI pseudaminic acid synthase.
Probab=79.35 E-value=42 Score=31.91 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=40.0
Q ss_pred HHHHHHHcCCCcEEEEeccc----hHHHHHHHHhccCCCcceEEEeCCC--------CHHHHHHHHH-CCCeEeecc
Q 020985 137 KQFELAYATKLPMFLHMREA----AADFCAIVERNKDRFTGGVTHSFTG--------SAEDRDKLLT-FNMYIGING 200 (319)
Q Consensus 137 ~qlelA~~~~~Pv~iH~r~a----~~~~l~il~~~~~~~~~~i~H~f~g--------~~~~~~~~l~-~g~y~s~sg 200 (319)
..|+...+.++||+|=+.-+ ....++++++.+. ..-+++||.++ +...+..+-+ .++-+++|.
T Consensus 125 ~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~-~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SD 200 (327)
T TIGR03586 125 PLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGC-KDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSD 200 (327)
T ss_pred HHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCC-CcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeC
Confidence 45677778899999999765 3445667766553 23457799887 3333443333 266666664
No 172
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=78.31 E-value=0.64 Score=46.19 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEec
Q 020985 130 IQRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 130 ~Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
.+..++....+++.+.|+|+.||..
T Consensus 273 ~~~~ll~~l~~~~~e~g~vmQlHiG 297 (462)
T PF02614_consen 273 FRTYLLWELAKMYAERGWVMQLHIG 297 (462)
T ss_dssp HHHHHHHHHHHHHHHHT-EEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCeeEEecC
Confidence 4567788889999999999999984
No 173
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=76.85 E-value=60 Score=29.71 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc-C-CeEEeeecCCCCcccccccCCCHHHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD-G-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLA 101 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~-~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l 101 (319)
.....++.+.+.|++.+++.|+ +.++..++++.+.+. . ++-..+|+-..... +.++ +-+.+
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~---------~~~~-~a~~a 91 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTA---------EAIE-LTKRA 91 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHH---------HHHH-HHHHH
Confidence 4566788888999999998875 456777777765543 2 33334555433221 2332 22333
Q ss_pred HhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCCCcceE
Q 020985 102 KEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDRFTGGV 175 (319)
Q Consensus 102 ~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~~~~~i 175 (319)
++ -.+.+| -+...++. . . .|.++++..-++|...++||+|+.--. .-++++-|.+.+ ..+-
T Consensus 92 ~~----~G~d~v-~~~~P~~~-~-~---~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p---~v~g 158 (284)
T cd00950 92 EK----AGADAA-LVVTPYYN-K-P---SQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHP---NIVG 158 (284)
T ss_pred HH----cCCCEE-EEcccccC-C-C---CHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCC---CEEE
Confidence 32 112222 22333332 1 1 245566666677777899999996321 123333232321 1223
Q ss_pred EEeCCCCHHHHHHHHH
Q 020985 176 THSFTGSAEDRDKLLT 191 (319)
Q Consensus 176 ~H~f~g~~~~~~~~l~ 191 (319)
+..-+++.....++..
T Consensus 159 iK~s~~~~~~~~~~~~ 174 (284)
T cd00950 159 IKEATGDLDRVSELIA 174 (284)
T ss_pred EEECCCCHHHHHHHHH
Confidence 4444566666665554
No 174
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=76.68 E-value=79 Score=30.97 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=37.1
Q ss_pred CcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCC------HHHHHHHHHCCCeEeecc
Q 020985 147 LPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGS------AEDRDKLLTFNMYIGING 200 (319)
Q Consensus 147 ~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~------~~~~~~~l~~g~y~s~sg 200 (319)
..+..||....++-+++|++.+ ..|.||-..+ ..-+.++++.|+-++++.
T Consensus 256 ~~~~~H~~~~~~~d~~~la~~g----~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGt 311 (442)
T PRK07203 256 KTLAAHCIYLSDEEIDLLKETD----TFVVHNPESNMGNAVGYNPVLEMIKNGILLGLGT 311 (442)
T ss_pred CcEEEEeecCCHHHHHHHHhcC----CeEEECchhhhhcccCCCCHHHHHHCCCeEEEcC
Confidence 3567999998888889998865 3478885432 234688889998888864
No 175
>PLN02591 tryptophan synthase
Probab=76.04 E-value=53 Score=29.96 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcC
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDG 68 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~ 68 (319)
..++.+++++++|++.++++-..+++.....+.++++.
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~g 131 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNG 131 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999888899988888888875
No 176
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=76.01 E-value=28 Score=34.30 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCC
Q 020985 281 INDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 281 is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
++ +-.+-..+..|+.++|++-+
T Consensus 374 md-~~~fVavtstnaAkifnlYp 395 (522)
T KOG2584|consen 374 MD-ENRFVAVTSTNAAKIFNLYP 395 (522)
T ss_pred cC-cccEEEEecccchhheeccC
Confidence 45 66777888899999998754
No 177
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=75.69 E-value=56 Score=28.79 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 267 LVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 267 ~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
++...+..+.. .|++ .+++.+.+..|..++|++.
T Consensus 256 ~~~~~~~~~~~-~gl~-~~~al~~~T~~pA~~lgl~ 289 (304)
T PF13147_consen 256 LLHEAMRLAVR-AGLS-PEEALRAATSNPARILGLD 289 (304)
T ss_dssp HHHHHHHHHHH-TSST-HHHHHHHHTHHHHHHTTBT
T ss_pred cchhhhhHHhh-cCCC-HHHHHHHHHHHHHHHhCCC
Confidence 45555555544 7999 9999999999999999983
No 178
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=74.97 E-value=52 Score=31.77 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCC-eE-eecccccc--Ch-
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNM-YI-GINGCSLK--TA- 206 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~-y~-s~sg~~~~--~~- 206 (319)
...+++.++-.++.+.|+++|..+.....++.+++.+.. .++.+..+.+...+++.+..+. .. .+++.++. ++
T Consensus 254 ~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~--~v~~~~~~~dl~~ak~~~g~~~~i~GNl~p~~L~~Gt~e 331 (378)
T cd03308 254 WPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKG--KTVGLFEYGDPKKVKEKLGDKKCIAGGFPTTLLKYGTPE 331 (378)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCC--cEEEcCCCCCHHHHHHHhCCCEEEEcCCCCHHHhcCCHH
Confidence 345577777777778999999999888889999887532 3455555678888888886321 11 13332221 22
Q ss_pred ----hhHHHHhcCC-CCCEEEcCCCCC
Q 020985 207 ----ENLDVVRGIP-IERMMIETDSPY 228 (319)
Q Consensus 207 ----~~~~~l~~ip-~drlLlETD~P~ 228 (319)
..+++++... ....++.+++..
T Consensus 332 ~i~~~v~~~l~~~~~~~gfIl~~gcgi 358 (378)
T cd03308 332 ECIDYVKELLDTLAPGGGFIFGTDKPI 358 (378)
T ss_pred HHHHHHHHHHHHhCCCCCEEEeCCCcC
Confidence 2346777654 567899998876
No 179
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=74.80 E-value=3.2 Score=29.44 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=8.3
Q ss_pred cEEeeccCCCCc
Q 020985 5 RLIDIAVNFTDG 16 (319)
Q Consensus 5 ~iiD~H~Hl~~~ 16 (319)
-+||+|+|+...
T Consensus 35 G~ID~H~H~~~~ 46 (68)
T PF13594_consen 35 GFIDMHTHLGEP 46 (68)
T ss_dssp -EEEEEE-TTTT
T ss_pred CeEeeeeccccc
Confidence 589999998843
No 180
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.72 E-value=66 Score=29.10 Aligned_cols=134 Identities=12% Similarity=0.066 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCC-----------CHHhHHHHHHHHHhcCCeEEee--ecC---CCCcccccccCCCHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGG-----------SLEESKEALAIAETDGRLFCTV--GVH---PTRCKEFEESGDPEKH 93 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~-----------~~~~~~~~~~l~~~~~~i~~~~--GiH---P~~~~~~~~~~~~~~~ 93 (319)
-++++.++.+++.|++.+=+... +.++...+.++++++.=-+.++ +.| |+...... ..++.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~---~r~~~ 92 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPA---TRERA 92 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHH---HHHHH
Confidence 47889999999999998755321 2334555666666665222222 322 21111000 01123
Q ss_pred HHHHHHHHHh--ccCCCCEEEEEeecCCCC-CCCC-CCHHHHHHHHHHHHHHHHcCCCcEEEEecc-----chHHHHHHH
Q 020985 94 FQALLSLAKE--GIEKGKVVAIGECGLDYD-RLHF-CPSEIQRKYFEKQFELAYATKLPMFLHMRE-----AAADFCAIV 164 (319)
Q Consensus 94 l~~l~~~l~~--~~~~~~~~aIGEiGLD~~-~~~~-~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~-----a~~~~l~il 164 (319)
++.+.+.++- .+. -+++.++ |.+.+ .... ..++.-.+.|++.+++|+++|+.+.+|... ...+++.++
T Consensus 93 ~~~~~~~i~~a~~lG-~~~v~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~ 169 (284)
T PRK13210 93 LEIMKKAIRLAQDLG-IRTIQLA--GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWD 169 (284)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEC--CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHH
Confidence 3344443321 122 2344442 33321 1110 112233467899999999999999999853 246777888
Q ss_pred HhccC
Q 020985 165 ERNKD 169 (319)
Q Consensus 165 ~~~~~ 169 (319)
+....
T Consensus 170 ~~v~~ 174 (284)
T PRK13210 170 KEIDS 174 (284)
T ss_pred HHcCC
Confidence 87653
No 181
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=74.67 E-value=3 Score=40.64 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=36.4
Q ss_pred CCCcEEeeccCCCCccccccccCCcCCCCCHHH--------HHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcC
Q 020985 2 ATIRLIDIAVNFTDGMFKGIYHGKQCHASDIAT--------VLSRAWSSGVDRIIVTGGSLEESKEALAIAETDG 68 (319)
Q Consensus 2 ~~m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~--------vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~ 68 (319)
.+|+|||-|||+.+..+... +- ..++.+ +-+.|+.+||..-.+.| +.++.+.-..+++.+|
T Consensus 23 kdlPIidpH~Hl~P~~i~en---~~--F~d~t~l~l~~DHY~wRmmrs~GV~e~~itg-d~sdrEkw~afa~~~~ 91 (463)
T COG1904 23 KDLPIIDPHCHLEPQEIAEN---EA--FPDPTSLWLKGDHYKWRMMRSNGVAERLITG-DTSDREKWRAFAKTVP 91 (463)
T ss_pred cCCCeeCCcCCCCHHHHhhc---CC--CCCHHHHhhcccHHHHHHHHHcCCchhhcCC-CCChHHHHHHHHHhhh
Confidence 36999999999998543211 00 123332 23567888998766655 5555555555555443
No 182
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=73.99 E-value=73 Score=29.26 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCE
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKV 110 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 110 (319)
..+..+++++++|++.++++-..+++.....+.++++. +-+.+-+=|.-. ++.++.+.+.. .+-+
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~g-i~~I~lv~PtT~---------~eri~~i~~~a-----~gFI 171 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYN-IELILLIAPTSS---------KSRIQKIARAA-----PGCI 171 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEEECCCCC---------HHHHHHHHHhC-----CCcE
Confidence 67889999999999999999888888888888888774 333333444431 13444444332 3456
Q ss_pred EEEEeecCCC
Q 020985 111 VAIGECGLDY 120 (319)
Q Consensus 111 ~aIGEiGLD~ 120 (319)
..++.-|.-.
T Consensus 172 Y~vS~~GvTG 181 (263)
T CHL00200 172 YLVSTTGVTG 181 (263)
T ss_pred EEEcCCCCCC
Confidence 6666666553
No 183
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=73.88 E-value=71 Score=29.09 Aligned_cols=125 Identities=21% Similarity=0.170 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHc--CCCEEEEeCC-----CHHhHHHHHHHHHhcC-CeEEeeecCCCCcccccccCCCHHHHHHHHHHHH
Q 020985 31 DIATVLSRAWSS--GVDRIIVTGG-----SLEESKEALAIAETDG-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAK 102 (319)
Q Consensus 31 ~~~~vl~~~~~~--Gv~~~v~~~~-----~~~~~~~~~~l~~~~~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~ 102 (319)
.++.+++.+.+. ..+.+|+.|- +.+++....+..++.+ .++...|=|=... ...+.+.+.
T Consensus 41 ~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~~v~GNHD~~~----------~~~~~~~~~-- 108 (275)
T PRK11148 41 SYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCVWLPGNHDFQP----------AMYSALQDA-- 108 (275)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEEEeCCCCCChH----------HHHHHHhhc--
Confidence 356677777654 3676666551 3456666666665553 4788999983321 111111111
Q ss_pred hccCCCCEEE----EEeecCCCCCCC--CC-CHHHHHHHHHHHHHHHHcCCCcEEEEe-c-------------cchHHHH
Q 020985 103 EGIEKGKVVA----IGECGLDYDRLH--FC-PSEIQRKYFEKQFELAYATKLPMFLHM-R-------------EAAADFC 161 (319)
Q Consensus 103 ~~~~~~~~~a----IGEiGLD~~~~~--~~-~~~~Q~~vf~~qlelA~~~~~Pv~iH~-r-------------~a~~~~l 161 (319)
.+.....+. +-.|+||-.... .. --+.|.+.++.+|+-+.+...-|++|- . ....+++
T Consensus 109 -~~~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~ 187 (275)
T PRK11148 109 -GISPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAPERHTLVLLHHHPLPAGCAWLDQHSLRNAHELA 187 (275)
T ss_pred -CCCccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCCCCCeEEEEcCCCCCCCcchhhccCCCCHHHHH
Confidence 011111111 224677743211 11 126799999999998876544566763 2 1135788
Q ss_pred HHHHhcc
Q 020985 162 AIVERNK 168 (319)
Q Consensus 162 ~il~~~~ 168 (319)
+++++++
T Consensus 188 ~ll~~~~ 194 (275)
T PRK11148 188 EVLAKFP 194 (275)
T ss_pred HHHhcCC
Confidence 8998763
No 184
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=73.14 E-value=57 Score=27.67 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCHHhHHHHH-HHHHhcCCeEEeee-cCCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 32 IATVLSRAWSSGVDRIIVTGGSLEESKEAL-AIAETDGRLFCTVG-VHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 32 ~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~-~l~~~~~~i~~~~G-iHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
...+++.+...|. ++.++|.+++..+.+. .+.++||++-. +| .||..... ..+++.+.|.+ ..+.
T Consensus 35 ~~~ll~~~~~~~~-~v~llG~~~~~~~~~~~~l~~~yp~l~i-~g~~~g~~~~~---------~~~~i~~~I~~--~~pd 101 (171)
T cd06533 35 MPALLELAAQKGL-RVFLLGAKPEVLEKAAERLRARYPGLKI-VGYHHGYFGPE---------EEEEIIERINA--SGAD 101 (171)
T ss_pred HHHHHHHHHHcCC-eEEEECCCHHHHHHHHHHHHHHCCCcEE-EEecCCCCChh---------hHHHHHHHHHH--cCCC
Confidence 3577888887775 5778899988887765 46677898654 46 55554331 12224444443 3577
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccch
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAA 157 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~ 157 (319)
++.||- |- ..|+.+.. +....++.+|++-+..++
T Consensus 102 iv~vgl-G~----------PkQE~~~~---~~~~~l~~~v~~~vG~~~ 135 (171)
T cd06533 102 ILFVGL-GA----------PKQELWIA---RHKDRLPVPVAIGVGGSF 135 (171)
T ss_pred EEEEEC-CC----------CHHHHHHH---HHHHHCCCCEEEEeceee
Confidence 888742 31 26766653 345556888998887654
No 185
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=72.22 E-value=75 Score=30.46 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=81.9
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc--hHHHHHHHHhccCCCcceEEEeCC--CCHHHHHHHH
Q 020985 115 ECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA--AADFCAIVERNKDRFTGGVTHSFT--GSAEDRDKLL 190 (319)
Q Consensus 115 EiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a--~~~~l~il~~~~~~~~~~i~H~f~--g~~~~~~~~l 190 (319)
.+||+.....+. -..|....++|++.|+-+.+|+..+ .+-+.+.+.-.+.. -|=|+-. -+.+.+..+.
T Consensus 172 ~~~l~~~e~~~p-----~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~---rI~HGi~~~~d~~L~~~l~ 243 (345)
T COG1816 172 GVGLAGSESGYP-----PELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAE---RIGHGIRAIEDPELLYRLA 243 (345)
T ss_pred cCCCCcccccCC-----HHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchh---hhccccccccCHHHHHHHH
Confidence 456664332222 2558888899999999999999854 34444444433321 1333221 2467778888
Q ss_pred HCCCeEeecccc-c--------cChhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCC
Q 020985 191 TFNMYIGINGCS-L--------KTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKG 261 (319)
Q Consensus 191 ~~g~y~s~sg~~-~--------~~~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~ 261 (319)
+.++-+.+.+.. . ..-..+++++. .=++=+.||.|-. .
T Consensus 244 ~~qI~levCP~SNi~~~~v~~~~~hPf~~~~d~--Gv~VsLnTDdp~~---------------f---------------- 290 (345)
T COG1816 244 ERQIPLEVCPLSNIQLGVVPSLAKHPFKKLFDA--GVKVSLNTDDPLY---------------F---------------- 290 (345)
T ss_pred HhCCeeEECCcchhhcccccchhhCcHHHHHHc--CCceEEcCCChhh---------------c----------------
Confidence 888888776531 1 11113344443 3357899999852 1
Q ss_pred CCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 020985 262 RNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCR 297 (319)
Q Consensus 262 ~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~r 297 (319)
+. .+..-+...|.+.+++ .+++++.. .|+..
T Consensus 291 -~~--~l~~Ey~~aa~~~~l~-~~dl~~~a-rnav~ 321 (345)
T COG1816 291 -GT--PLIEEYLVAAQIYGLS-REDLCELA-RNAVE 321 (345)
T ss_pred -CC--chHHHHHHHHHHhCCC-HHHHHHHH-HHHHH
Confidence 11 3344466677788899 99998877 45443
No 186
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=72.01 E-value=80 Score=28.88 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcC
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDG 68 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~ 68 (319)
..++.+++++++|++.++++-..+++.+...+.++++.
T Consensus 105 G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~g 142 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHG 142 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999888888888888888875
No 187
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=71.60 E-value=1e+02 Score=30.91 Aligned_cols=106 Identities=20% Similarity=0.200 Sum_probs=66.4
Q ss_pred CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHH-HHHcCCCcEEEEeccch-------HHHHHHHHhccCCCcceEEEeCC
Q 020985 109 KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFE-LAYATKLPMFLHMREAA-------ADFCAIVERNKDRFTGGVTHSFT 180 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qle-lA~~~~~Pv~iH~r~a~-------~~~l~il~~~~~~~~~~i~H~f~ 180 (319)
.++|+|-+|=.- ...+ ..-|..++. ++++.++|+.+|+.... ..+.+.+ ..+. +-|=|+|.
T Consensus 289 ~vvGfDL~G~E~--~g~p-----l~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAI-lLg~---~RIGHG~~ 357 (479)
T TIGR01431 289 FVAGFDLVGQED--KGRS-----LLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDAL-LLNT---TRIGHGFA 357 (479)
T ss_pred eEEEEeccCCCC--CCCC-----HHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHH-HcCC---ccccCccc
Confidence 367776666331 0111 233555554 56669999999998653 4566666 3432 33778876
Q ss_pred C--CHHHHHHHHHCCCeEeecccc---cc------ChhhHHHHh-cCCCCCEEEcCCCCC
Q 020985 181 G--SAEDRDKLLTFNMYIGINGCS---LK------TAENLDVVR-GIPIERMMIETDSPY 228 (319)
Q Consensus 181 g--~~~~~~~~l~~g~y~s~sg~~---~~------~~~~~~~l~-~ip~drlLlETD~P~ 228 (319)
- +++.++.+.+.++-+.+.+.. ++ +--+..+++ -+| +.+.||.|-
T Consensus 358 l~~~P~l~~~vke~~I~lEvCP~SN~~l~~v~~~~~HPl~~lla~Gvp---v~InSDDP~ 414 (479)
T TIGR01431 358 LVKHPLVLQMLKERNIAVEVNPISNQVLQLVADLRNHPCAYLFADNYP---MVISSDDPA 414 (479)
T ss_pred ccCCHHHHHHHHHhCCeEEECccchhhhcccCCcccChHHHHHHCCCc---EEEeCCCcc
Confidence 4 478888888899988887641 11 111344444 355 899999996
No 188
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=71.40 E-value=85 Score=28.92 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc-C-CeEEeeecCCCCcccccccCCCHHHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD-G-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLA 101 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~-~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l 101 (319)
.+.++++.+.+.||+.+++.|+ +.++..++++.+.+. . ++-..+|+=..... +.++.. +.+
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~---------~~i~~a-~~a 92 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTA---------EAIELT-KFA 92 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHH---------HHHHHH-HHH
Confidence 4567788888999999998875 466777777765443 2 33233444322221 233322 222
Q ss_pred HhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCCCcce-
Q 020985 102 KEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDRFTGG- 174 (319)
Q Consensus 102 ~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~~~~~- 174 (319)
++ -.+-+| -+...++. . . .|..+++..-++|...++||+|..--. ..+++.-|.+. +++
T Consensus 93 ~~----~G~d~v-~~~pP~~~-~-~---~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~----p~v~ 158 (292)
T PRK03170 93 EK----AGADGA-LVVTPYYN-K-P---TQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEH----PNIV 158 (292)
T ss_pred HH----cCCCEE-EECCCcCC-C-C---CHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcC----CCEE
Confidence 31 112233 22334332 1 1 245666666777777899999986311 23444434333 233
Q ss_pred EEEeCCCCHHHHHHHHH
Q 020985 175 VTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 175 i~H~f~g~~~~~~~~l~ 191 (319)
-+.--+++.....++++
T Consensus 159 giK~s~~d~~~~~~~~~ 175 (292)
T PRK03170 159 GIKEATGDLERVSELIE 175 (292)
T ss_pred EEEECCCCHHHHHHHHH
Confidence 23445667777777665
No 189
>PRK01211 dihydroorotase; Provisional
Probab=71.38 E-value=11 Score=36.91 Aligned_cols=39 Identities=23% Similarity=0.118 Sum_probs=29.2
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG 51 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~ 51 (319)
-+||.|+|+..+.+. +.+|+..--++|..-||..++.+.
T Consensus 47 G~ID~HvH~r~pg~~--------~ked~~s~s~AAaaGGvTtv~dmP 85 (409)
T PRK01211 47 AATDIHVHFRTPGET--------EKEDFSTGTLSAIFGGTTFIMDMP 85 (409)
T ss_pred CeEEeeeccCCCCCc--------ccCcHHHHHHHHHcCCcEEEEECC
Confidence 489999999765321 236777777788888999888875
No 190
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=70.25 E-value=22 Score=32.55 Aligned_cols=102 Identities=16% Similarity=0.242 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHH--------------hHHHHHHHHHhc--CCeEEeeecCCCCcccccccCCCHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLE--------------ESKEALAIAETD--GRLFCTVGVHPTRCKEFEESGDPEKHF 94 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~--------------~~~~~~~l~~~~--~~i~~~~GiHP~~~~~~~~~~~~~~~l 94 (319)
.+.+.|.++...||+.+++++.++. +...++++.++. +....++..||..-.... ..+..+
T Consensus 74 ~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~---~~~~~~ 150 (274)
T cd00537 74 ELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAP---SLEEDI 150 (274)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCC---CHHHHH
Confidence 5677888999999999999954321 234445554443 333345555663211110 112344
Q ss_pred HHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCC--CcEEE
Q 020985 95 QALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATK--LPMFL 151 (319)
Q Consensus 95 ~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~--~Pv~i 151 (319)
+.|.+-+ +.|-||.-.. .- -..+.|.+.++.+++.| +||+.
T Consensus 151 ~~L~~Ki-------------~aGA~f~iTQ-~~--fd~~~~~~~~~~~~~~gi~vPIi~ 193 (274)
T cd00537 151 KRLKRKV-------------DAGADFIITQ-LF--FDNDAFLRFVDRCRAAGITVPIIP 193 (274)
T ss_pred HHHHHHH-------------HCCCCEEeec-cc--ccHHHHHHHHHHHHHcCCCCCEEe
Confidence 4444333 2266664211 11 12356777788888875 66653
No 191
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=70.03 E-value=67 Score=27.22 Aligned_cols=101 Identities=23% Similarity=0.251 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCHHhHHHHHH-HHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCE
Q 020985 32 IATVLSRAWSSGVDRIIVTGGSLEESKEALA-IAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKV 110 (319)
Q Consensus 32 ~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~-l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 110 (319)
...+++.+.+.|. ++.++|.+++..+.+.+ +.++||++- .+|.|+-+... +..+++.+.|++ ..+.+
T Consensus 37 ~~~l~~~~~~~~~-~ifllG~~~~~~~~~~~~l~~~yP~l~-ivg~~~g~f~~--------~~~~~i~~~I~~--~~pdi 104 (172)
T PF03808_consen 37 FPDLLRRAEQRGK-RIFLLGGSEEVLEKAAANLRRRYPGLR-IVGYHHGYFDE--------EEEEAIINRINA--SGPDI 104 (172)
T ss_pred HHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHCCCeE-EEEecCCCCCh--------hhHHHHHHHHHH--cCCCE
Confidence 3567888888776 57788888888776654 566788754 46655544321 234555555554 36778
Q ss_pred EEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchH
Q 020985 111 VAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAA 158 (319)
Q Consensus 111 ~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~ 158 (319)
+.||- |- ..|+.+. .+....++-+|++-+..+++
T Consensus 105 v~vgl-G~----------PkQE~~~---~~~~~~l~~~v~i~vG~~~d 138 (172)
T PF03808_consen 105 VFVGL-GA----------PKQERWI---ARHRQRLPAGVIIGVGGAFD 138 (172)
T ss_pred EEEEC-CC----------CHHHHHH---HHHHHHCCCCEEEEECchhh
Confidence 88752 31 2676655 45566788888887766543
No 192
>PRK01060 endonuclease IV; Provisional
Probab=69.82 E-value=86 Score=28.37 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHcCCCc-EEEEec
Q 020985 130 IQRKYFEKQFELAYATKLP-MFLHMR 154 (319)
Q Consensus 130 ~Q~~vf~~qlelA~~~~~P-v~iH~r 154 (319)
.-.+.+++.+++|.++|.| |++|..
T Consensus 86 ~s~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 86 KSRDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3456688888888888877 556764
No 193
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=69.44 E-value=38 Score=30.92 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCCcEEEEecc----------chH----HHHHHHHhccCCCcceEE-EeCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMRE----------AAA----DFCAIVERNKDRFTGGVT-HSFTG 181 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~----------a~~----~~l~il~~~~~~~~~~i~-H~f~g 181 (319)
.-|-..++...+.|+|+.+|-.. +.. .++++.++++ ..++|+ ||-+.
T Consensus 117 ~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~~Flptll~LhqrfP--~LKivlEHcTt~ 178 (344)
T KOG2902|consen 117 GKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTLLQLHQRFP--QLKIVLEHCTTM 178 (344)
T ss_pred hhhhHHHHHHHHcCceEEecCCCCCccCCceecchhhhHHHHHHHHHhCc--cceeHHHhcccH
Confidence 44667778888999999999853 222 3445555554 246666 88543
No 194
>PRK05406 LamB/YcsF family protein; Provisional
Probab=68.69 E-value=94 Score=28.33 Aligned_cols=142 Identities=16% Similarity=0.218 Sum_probs=74.8
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCcccc
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEF 84 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~ 84 (319)
|-||.-|-++.. | |.|. .++-++++.-...++|. |=-=+.+|..-.+++++++++. ..+|-||.|.+..
T Consensus 2 ~~idLN~DlGE~-f-G~w~-----~g~D~~lmp~IssANIA-CG~HAGDp~~M~~tv~lA~~~g---V~IGAHPgypD~~ 70 (246)
T PRK05406 2 MKIDLNCDLGES-F-GAWK-----MGDDEALLPLVTSANIA-CGFHAGDPAVMRRTVRLAKENG---VAIGAHPGYPDLE 70 (246)
T ss_pred ceeEeecccCCC-C-CCCC-----CCCHHHHHHHhhhHHHh-ccccCCCHHHHHHHHHHHHHcC---CeEccCCCCCccC
Confidence 458888888872 3 2221 12334555555555542 1111358999999999999875 5899999997742
Q ss_pred cc-c---CCCHHHHH--------HHHHHHHhccCCCCEEEEEeecCCCCCCC---CCCHHHHHHHHHHHHHHHHcCCCcE
Q 020985 85 EE-S---GDPEKHFQ--------ALLSLAKEGIEKGKVVAIGECGLDYDRLH---FCPSEIQRKYFEKQFELAYATKLPM 149 (319)
Q Consensus 85 ~~-~---~~~~~~l~--------~l~~~l~~~~~~~~~~aIGEiGLD~~~~~---~~~~~~Q~~vf~~qlelA~~~~~Pv 149 (319)
.- + ....+++. .|..++.. ...+ +.|-.++ |.......++.+..++..++++.++
T Consensus 71 gFGRR~m~~s~~el~~~v~yQigAL~~~a~~--~g~~--------l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l 140 (246)
T PRK05406 71 GFGRRNMDLSPEELYALVLYQIGALQAIARA--AGGR--------VSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSL 140 (246)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--cCCe--------eEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 11 0 01112222 12222221 0111 1121111 1122345677777888777777776
Q ss_pred EEEeccchHHHHHHHHhcc
Q 020985 150 FLHMREAAADFCAIVERNK 168 (319)
Q Consensus 150 ~iH~r~a~~~~l~il~~~~ 168 (319)
.+=+. +...+.++.++.+
T Consensus 141 ~l~~~-~~s~~~~~A~~~G 158 (246)
T PRK05406 141 ILVGL-AGSELIRAAEEAG 158 (246)
T ss_pred EEEec-CChHHHHHHHHcC
Confidence 66543 3444556665554
No 195
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=68.49 E-value=88 Score=29.29 Aligned_cols=104 Identities=15% Similarity=0.107 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc-C-CeEEeeecCCCCcccccccCCCHHHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD-G-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLA 101 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~-~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l 101 (319)
.+..+++.+...||+.+++.|+ +.++...+++.+.+. . ++-..+|+--.... +.++ +-+..
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~---------~ai~-~a~~A 99 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTR---------DTIA-RTRAL 99 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHH---------HHHH-HHHHH
Confidence 4567889999999999998876 456677776655433 2 34344555433221 2232 22333
Q ss_pred HhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEec
Q 020985 102 KEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFLHMR 154 (319)
Q Consensus 102 ~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~iH~r 154 (319)
++ -.+-+| -+--.||. . . .|..+++..-++|... ++||+|...
T Consensus 100 ~~----~Gad~v-lv~~P~y~-~-~---~~~~l~~yf~~va~a~~~lPv~iYn~ 143 (309)
T cd00952 100 LD----LGADGT-MLGRPMWL-P-L---DVDTAVQFYRDVAEAVPEMAIAIYAN 143 (309)
T ss_pred HH----hCCCEE-EECCCcCC-C-C---CHHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 31 112233 22333332 1 1 3566677777777777 699998753
No 196
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=67.71 E-value=1.3e+02 Score=29.57 Aligned_cols=147 Identities=10% Similarity=0.138 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-C---HHh----HHHHHHHHHhcC-----CeEEeeecCC-CCcccccccCCCHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-S---LEE----SKEALAIAETDG-----RLFCTVGVHP-TRCKEFEESGDPEKHFQA 96 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-~---~~~----~~~~~~l~~~~~-----~i~~~~GiHP-~~~~~~~~~~~~~~~l~~ 96 (319)
..+.+++.+.+.|++.++..++ + +.+ .....++.+++. .+.+.+|.|- ..++ ++.+++
T Consensus 137 ~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s--------~~~l~~ 208 (441)
T TIGR03314 137 SLSTIRKAADEAGLRTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVS--------DAGLEM 208 (441)
T ss_pred hHHHHHHHHHHhCCeEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCC--------HHHHHH
Confidence 3567788899999987664321 1 111 122233333332 3567788773 3222 256777
Q ss_pred HHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHH--HHHH-HHHHHHHHcC---C-CcEEEEeccchHHHHHHHHhccC
Q 020985 97 LLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQ--RKYF-EKQFELAYAT---K-LPMFLHMREAAADFCAIVERNKD 169 (319)
Q Consensus 97 l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q--~~vf-~~qlelA~~~---~-~Pv~iH~r~a~~~~l~il~~~~~ 169 (319)
+.++.++. +-+-..=++| ...+.. .+.+ ..-++...++ + ..+..||....++-+++|++.+
T Consensus 209 ~~~lA~~~-~~~i~~H~~E----------~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g- 276 (441)
T TIGR03314 209 CREAVQAT-GRGFHIHVAE----------DIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETD- 276 (441)
T ss_pred HHHHHHHc-CCCEEEEcCC----------CHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcC-
Confidence 77776531 0011111222 111111 1111 1122333333 3 3567999998888889998875
Q ss_pred CCcceEEEeCCCCH------HHHHHHHHCCCeEeecc
Q 020985 170 RFTGGVTHSFTGSA------EDRDKLLTFNMYIGING 200 (319)
Q Consensus 170 ~~~~~i~H~f~g~~------~~~~~~l~~g~y~s~sg 200 (319)
..|.||-..+. .-+.++++.|+-++++.
T Consensus 277 ---~~v~~cP~sn~~l~~G~~p~~~~~~~Gv~v~LGt 310 (441)
T TIGR03314 277 ---TFVVHNPESNMGNAVGYNPVLRMFKNGILLGLGT 310 (441)
T ss_pred ---CcEEECHHHHhhhccCCCCHHHHHHCCCEEEEcC
Confidence 34788863322 22577888898887754
No 197
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=67.27 E-value=1e+02 Score=28.27 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEe-CC-CCHHHHHHHHHCCC--eEeecccc-ccCh
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHS-FT-GSAEDRDKLLTFNM--YIGINGCS-LKTA 206 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~-f~-g~~~~~~~~l~~g~--y~s~sg~~-~~~~ 206 (319)
...+++.++..+..+.|+++|+......+++.+.+.+.+ +++. ++ ++...+++.+..+. .-++.... ..++
T Consensus 185 ~p~~k~i~~~i~~~~~~~~lH~cg~~~~~~~~l~~~~~d----~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~~~~~~~ 260 (306)
T cd00465 185 LPAYKKVAEYKAAGEVPIVHHSCYDAADLLEEMIQLGVD----VISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATD 260 (306)
T ss_pred HHHHHHHHHHHhhcCCceEEEECCCHHHHHHHHHHhCcc----eEecccccCCHHHHHHHhCCCEEEECCCCccccCCCH
Confidence 455566666555668999999987767788888877532 3331 11 25555555543221 11122211 1222
Q ss_pred h-----hHHHHhcCCCCCEEEcCCCCC
Q 020985 207 E-----NLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 207 ~-----~~~~l~~ip~drlLlETD~P~ 228 (319)
+ .+++++.++. +.++.||+..
T Consensus 261 e~i~~~v~~~l~~~~~-~~il~~~cgi 286 (306)
T cd00465 261 EECIAKVEELVERLGP-HYIINPDCGL 286 (306)
T ss_pred HHHHHHHHHHHHHhCC-CeEEeCCCCC
Confidence 2 3467777654 8999999976
No 198
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=66.48 E-value=1.2e+02 Score=28.67 Aligned_cols=168 Identities=11% Similarity=-0.017 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCCHH--------hHHHHHHHHHhc----CC--eEEeeecCCCCcccccccCCCHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGSLE--------ESKEALAIAETD----GR--LFCTVGVHPTRCKEFEESGDPEKHFQ 95 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~~~--------~~~~~~~l~~~~----~~--i~~~~GiHP~~~~~~~~~~~~~~~l~ 95 (319)
+.+++.++++.+.|+++++++...|. ..+.+.+..++. +. ++.....||.+++. +.+
T Consensus 104 P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~yi~a---------~~~ 174 (322)
T TIGR00109 104 PFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKA---------LAD 174 (322)
T ss_pred CCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccCCCeEEEeCccccCcHHHHH---------HHH
Confidence 68899999999999999999875542 222232332332 32 23444555655542 334
Q ss_pred HHHHHHHhccC-CCCEEEEEeecCCCCCCCC-CCHHHHHHHHHHHHHHHHcCCC--c--EEEEeccc--------hHHHH
Q 020985 96 ALLSLAKEGIE-KGKVVAIGECGLDYDRLHF-CPSEIQRKYFEKQFELAYATKL--P--MFLHMREA--------AADFC 161 (319)
Q Consensus 96 ~l~~~l~~~~~-~~~~~aIGEiGLD~~~~~~-~~~~~Q~~vf~~qlelA~~~~~--P--v~iH~r~a--------~~~~l 161 (319)
.+.+.+.+.-. +...+-++-=||.....+. ++. +.++.+..-.++++++. + +...++-. .++++
T Consensus 175 ~I~~~l~~~~~~~~~~llfSaHglP~~~~~~Gd~Y--~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~~Wl~P~~~~~l 252 (322)
T TIGR00109 175 SIKETLASFPEPDNAVLLFSAHGLPQSYVDEGDPY--PAECEATTRLIAEKLGFPNEYRLTWQSRVGPEPWLGPYTEELL 252 (322)
T ss_pred HHHHHHHhcCCcCCcEEEEeCCCCchhHhhCCCCh--HHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcCCCCHHHHH
Confidence 44444332101 1225667777777432211 122 23444444445555552 2 23334311 34566
Q ss_pred HHHHhccCCCcceEE--EeCCC-CHHHH--------HHHHHCCCe-EeeccccccChhhHH
Q 020985 162 AIVERNKDRFTGGVT--HSFTG-SAEDR--------DKLLTFNMY-IGINGCSLKTAENLD 210 (319)
Q Consensus 162 ~il~~~~~~~~~~i~--H~f~g-~~~~~--------~~~l~~g~y-~s~sg~~~~~~~~~~ 210 (319)
+-|.+.+.+ ++++ -+|.. ..|++ +.+.+.|.- +...++.-.++...+
T Consensus 253 ~~l~~~G~k--~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~~p~fi~ 311 (322)
T TIGR00109 253 EKLGEQGVQ--HIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNAKPEFIE 311 (322)
T ss_pred HHHHHcCCc--eEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCCCHHHHH
Confidence 556555432 3433 34433 35555 444455654 555444333444433
No 199
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=66.43 E-value=73 Score=28.74 Aligned_cols=23 Identities=4% Similarity=0.072 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHcCCCc-EEEEe
Q 020985 131 QRKYFEKQFELAYATKLP-MFLHM 153 (319)
Q Consensus 131 Q~~vf~~qlelA~~~~~P-v~iH~ 153 (319)
..+.+++.+++|+++|.+ |++|.
T Consensus 82 ~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 82 SIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcc
Confidence 345566666666666665 44565
No 200
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=66.15 E-value=1.3e+02 Score=29.17 Aligned_cols=266 Identities=15% Similarity=0.101 Sum_probs=132.3
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEe--CCCHHhHHHHHHHHHhcC--CeEEeeecC---
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVT--GGSLEESKEALAIAETDG--RLFCTVGVH--- 77 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~--~~~~~~~~~~~~l~~~~~--~i~~~~GiH--- 77 (319)
-+||.|+|=+...... +. +....++.+-+...+.|+..++-. +.+.+.....++..+++- ..=-.+|+|
T Consensus 53 GfID~hihG~gG~~~~---D~-~~~~~l~~i~~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEG 128 (380)
T COG1820 53 GFIDLHIHGGGGADFM---DA-GSVETLETMAEAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEG 128 (380)
T ss_pred cEEEEeecCcCccccc---Cc-cCHHHHHHHHHHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEeec
Confidence 5899999987642210 00 001236667777778898766532 334555555544433331 122357888
Q ss_pred CCCcccccccCCCHH-----HHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEE-
Q 020985 78 PTRCKEFEESGDPEK-----HFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFL- 151 (319)
Q Consensus 78 P~~~~~~~~~~~~~~-----~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~i- 151 (319)
|+...... .-..++ ..+++++++.. .+. .|=-+-|--.. .. -.+++....+.+.-|++
T Consensus 129 P~ls~~kk-GAh~~~~ir~~~~~~~~~~~~~---a~g--~i~~vTlAPE~---~~-------~~e~i~~l~~~giivs~G 192 (380)
T COG1820 129 PFLSPEKK-GAHNPEYIRPPDPEELEQLIAA---ADG--LIKLVTLAPEL---DG-------TKELIRLLANAGIVVSIG 192 (380)
T ss_pred CccCHhhc-cCCCHHHhCCCCHHHHHHHHhh---ccC--ceEEEEECCCC---CC-------CHHHHHHHHhCCeEEEec
Confidence 65433211 001111 23455565542 111 12123333111 10 12234555667877776
Q ss_pred EeccchHHHHHHHHhccCCCcceEEEeCCCCHHH-------HHHHHHC-CCeEeeccc-cccChhhHH-HHhcCCCCCEE
Q 020985 152 HMREAAADFCAIVERNKDRFTGGVTHSFTGSAED-------RDKLLTF-NMYIGINGC-SLKTAENLD-VVRGIPIERMM 221 (319)
Q Consensus 152 H~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~-------~~~~l~~-g~y~s~sg~-~~~~~~~~~-~l~~ip~drlL 221 (319)
|+--..+.+.+-++ .+ ...+-|.|++.+-. +-..+.. ++|.++=.- +--.+...+ +.+.-+.|||+
T Consensus 193 HS~Atye~~~~a~~-~G---a~~~THlfNaMs~l~hREPGvvGA~L~~~~~~~eiIaDG~HVhP~~~~ia~~~kg~~~i~ 268 (380)
T COG1820 193 HSNATYEQARAAFE-AG---ATFVTHLFNAMSGLHHREPGVVGAALDNPDVYAEIIADGVHVHPAAIRLALKAKGGDKIV 268 (380)
T ss_pred CccccHHHHHHHHH-hC---ccEEEeeccCCCCCCCCCCcccceeecCCCeEEEEEccCcccCHHHHHHHHhccCCceEE
Confidence 55444555555553 33 35688999986422 3333333 355554211 111333344 44555899999
Q ss_pred EcCCCCCccccccccccccccccCCC---c-ccccccccccCCC-CCccchHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 020985 222 IETDSPYCEIKNAHAGISFVKSTWPS---K-KKEKYDQDSLVKG-RNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC 296 (319)
Q Consensus 222 lETD~P~~~~~~~~~~~~~~~~~l~~---~-~~~k~~~~~~~~~-~n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~ 296 (319)
+=||+=- +....-| +|. |.. . ..|++.. .+.. ...-..+..-++-+-+.-+++ .+|..+....|..
T Consensus 269 LVTDam~--a~G~~dg-~y~---lgg~~V~v~~g~~~~--~~GtLAGS~Ltm~~avrn~v~~~~~~-~~eAv~maS~~PA 339 (380)
T COG1820 269 LVTDAMA--AAGLPDG-EYI---LGGQTVTVADGARRL--EDGTLAGSTLTMDEAVRNLVEWGGIS-LAEAVRMASLNPA 339 (380)
T ss_pred EEEcccc--ccCCCCc-cEE---ECCEEEEEECCEEEC--CCCceeeeeeeHHHHHHHHHHHhCCC-HHHHHHHhhhhHH
Confidence 9999843 1111000 010 100 0 0111000 0000 112234556666666777999 9999999999999
Q ss_pred HhcCCCC
Q 020985 297 RVFFPQD 303 (319)
Q Consensus 297 rlf~~~~ 303 (319)
+.+++..
T Consensus 340 ~~lgl~~ 346 (380)
T COG1820 340 KALGLDD 346 (380)
T ss_pred HHhCCcC
Confidence 9998753
No 201
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=66.07 E-value=78 Score=28.70 Aligned_cols=136 Identities=14% Similarity=0.088 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHcCCCEEEE-eC---------CCHHhHHHHHHHHHhcCC-eEEeeecCCCCcccccccCCCHHHHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIV-TG---------GSLEESKEALAIAETDGR-LFCTVGVHPTRCKEFEESGDPEKHFQALL 98 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~-~~---------~~~~~~~~~~~l~~~~~~-i~~~~GiHP~~~~~~~~~~~~~~~l~~l~ 98 (319)
.++++.++.+++.|.+.+=+ +. .+.++...+.+++++++. .+.+.+-.+......++ +...+.++.+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~r~~~~~~~~ 88 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDK-EKREKSIERLK 88 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCH-HHHHHHHHHHH
Confidence 47788899999999876522 21 123556667777777732 23332221111100000 00123444444
Q ss_pred HHHHhc--cCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc--------hHHHHHHHHhcc
Q 020985 99 SLAKEG--IEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA--------AADFCAIVERNK 168 (319)
Q Consensus 99 ~~l~~~--~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a--------~~~~l~il~~~~ 168 (319)
+.++-. +.- +++.+ -.|-.........++.-.+.+++..+.|+++|+.+.|+.... ..++.+++++.+
T Consensus 89 ~~i~~A~~lG~-~~v~~-~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~ 166 (279)
T cd00019 89 DEIERCEELGI-RLLVF-HPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIK 166 (279)
T ss_pred HHHHHHHHcCC-CEEEE-CCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 444321 111 22222 112110000001123345788888999999999999988532 377888898875
No 202
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=65.96 E-value=1e+02 Score=27.89 Aligned_cols=133 Identities=12% Similarity=0.093 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHcCCCEEEEeC-----------CCHHhHHHHHHHHHhcCCeEE--eeec---CCCCcccccccCCCHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTG-----------GSLEESKEALAIAETDGRLFC--TVGV---HPTRCKEFEESGDPEKH 93 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~-----------~~~~~~~~~~~l~~~~~~i~~--~~Gi---HP~~~~~~~~~~~~~~~ 93 (319)
...++.++.+++.|.+.+=+.. .++.+...+.+..+++.--+. +.|. +|.....-. ..++.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~---~r~~~ 92 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKA---VRQQG 92 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHH---HHHHH
Confidence 4688999999999999774421 123344445555666642122 2222 233211100 01122
Q ss_pred HHHHHHH---HHhccCCCCEEEEEeecCCCCCCCC--CCHHHHHHHHHHHHHHHHcCCCcEEEEec-----cchHHHHHH
Q 020985 94 FQALLSL---AKEGIEKGKVVAIGECGLDYDRLHF--CPSEIQRKYFEKQFELAYATKLPMFLHMR-----EAAADFCAI 163 (319)
Q Consensus 94 l~~l~~~---l~~~~~~~~~~aIGEiGLD~~~~~~--~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r-----~a~~~~l~i 163 (319)
++.+++. +.+ +.- +++.++ |-+...... ..++.=.+.+++..++|+++|+.+.+|.. ....+++++
T Consensus 93 ~~~~~~~i~~a~~-lG~-~~v~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~l 168 (279)
T TIGR00542 93 LEIMEKAIQLARD-LGI-RTIQLA--GYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKW 168 (279)
T ss_pred HHHHHHHHHHHHH-hCC-CEEEec--CcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHH
Confidence 3333333 332 222 344454 222111000 11222346678889999999999999974 234567777
Q ss_pred HHhccC
Q 020985 164 VERNKD 169 (319)
Q Consensus 164 l~~~~~ 169 (319)
++..+.
T Consensus 169 i~~v~~ 174 (279)
T TIGR00542 169 DHYLNS 174 (279)
T ss_pred HHHcCC
Confidence 876643
No 203
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=65.33 E-value=32 Score=31.97 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHH
Q 020985 58 KEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEK 137 (319)
Q Consensus 58 ~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~ 137 (319)
+.+++.++++...++++-++=. ++++.+.+-.++ .+.|-++.+.+-+..|.- .-..+...
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~nl------------E~~~AileaA~e-~~sPvIiq~S~g~~~y~g-------g~~~~~~~ 66 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINNL------------ETLQAILEAAEE-EKSPVIIQFSEGAAKYAG-------GADSLAHM 66 (286)
T ss_pred HHHHHHHHHcCCceeeeeecCH------------HHHHHHHHHHHH-hCCCEEEEecccHHHHhc-------hHHHHHHH
Confidence 4456666666656666665421 455555554443 246778888888887641 12345556
Q ss_pred HHHHHHcCCCcEEEEecc
Q 020985 138 QFELAYATKLPMFLHMRE 155 (319)
Q Consensus 138 qlelA~~~~~Pv~iH~r~ 155 (319)
...+|.+++.||+||+=.
T Consensus 67 v~~~a~~~~vPV~lHlDH 84 (286)
T COG0191 67 VKALAEKYGVPVALHLDH 84 (286)
T ss_pred HHHHHHHCCCCEEEECCC
Confidence 678899999999999954
No 204
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=64.49 E-value=9.6 Score=34.89 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=27.4
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEE
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIV 49 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~ 49 (319)
+|.+|.|||..... | ...+.++++++.+.|++-+.+
T Consensus 1 ~~~~DLHvHSt~Sd--g--------~~~p~~vv~~A~~~g~~vlAi 36 (258)
T COG0613 1 WMKADLHVHTTASD--G--------GLTPREVVERAKAKGVDVLAI 36 (258)
T ss_pred CcceeeeEecccCC--C--------CCCHHHHHHHHHHcCCCEEEE
Confidence 57899999998642 1 135889999999999974433
No 205
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=64.39 E-value=42 Score=31.57 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCC-cEEEEeccchHHHHHHHHhccCCCcceEEEeCCC-CHHHHHHHHH-CCCeE-eecc-ccc-cC
Q 020985 132 RKYFEKQFELAYATKL-PMFLHMREAAADFCAIVERNKDRFTGGVTHSFTG-SAEDRDKLLT-FNMYI-GING-CSL-KT 205 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~-Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g-~~~~~~~~l~-~g~y~-s~sg-~~~-~~ 205 (319)
...++++++.+++.+. |+++|+-.....+++.+.+.+.+ ++|+-.. +...+.+-+. .-+.. .+.+ .++ .+
T Consensus 219 ~P~~k~i~~~i~~~g~~~~~lH~cG~~~~~~~~l~~~g~d----~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~gt 294 (343)
T PF01208_consen 219 LPYLKKIIDAIKEAGKDPVILHICGNTTPILDDLADLGAD----VLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLFGT 294 (343)
T ss_dssp HHHHHHHHHHHHHHETE-EEEEETTHG-GGHHHHHTSS-S----EEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGGS-
T ss_pred HHHHHHHHHHHHHhCCCceEEEECCchHHHHHHHHhcCCC----EEEEcCCCCHHHHHHHhCCCeEEECCCCccccccCC
Confidence 5668888999999999 99999988888899999887632 4665332 4433443332 22332 2444 222 22
Q ss_pred h-----hhHHHHhc--CCCCCEEEcCCCCC
Q 020985 206 A-----ENLDVVRG--IPIERMMIETDSPY 228 (319)
Q Consensus 206 ~-----~~~~~l~~--ip~drlLlETD~P~ 228 (319)
+ ..+++++. -+..++++.+++..
T Consensus 295 ~eei~~~v~~~i~~~~~~~~gfIl~~gc~i 324 (343)
T PF01208_consen 295 PEEIEEEVKRLIEEGLAGGGGFILSPGCGI 324 (343)
T ss_dssp HHHHHHHHHHHHHHTHCTSSSEEBEBSS--
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEeCCCcC
Confidence 2 23467773 56899999999864
No 206
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=64.02 E-value=31 Score=32.13 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCH----------HhHHHHHHHHHhc-CC-eEEeeecCCCCcccccccCCCHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSL----------EESKEALAIAETD-GR-LFCTVGVHPTRCKEFEESGDPEKHFQALL 98 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~----------~~~~~~~~l~~~~-~~-i~~~~GiHP~~~~~~~~~~~~~~~l~~l~ 98 (319)
.+.+.|+.+.+.||+.+++...++ .+...++++.+++ .+ +..+++.+|..-.. ++ .....+..++
T Consensus 93 ~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~-s~--~~~~d~~~lk 169 (291)
T COG0685 93 EIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPE-SK--DVKEDIKRLK 169 (291)
T ss_pred HHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCcc-ch--hhHHHHHHHH
Confidence 567789999999999999998776 2455667777754 44 56788888876543 11 0112233333
Q ss_pred HHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC--CCcEEE
Q 020985 99 SLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT--KLPMFL 151 (319)
Q Consensus 99 ~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~--~~Pv~i 151 (319)
+-+ +.|=|+.-.. ..-..+.|.+..+..++. ++||+.
T Consensus 170 rKv-------------~aGAd~~iTQ---~~fd~e~~~~~~~~~~~~g~~~pI~~ 208 (291)
T COG0685 170 RKV-------------DAGADFFITQ---FFFDVEAFERFAERVRAAGIDIPIIP 208 (291)
T ss_pred HHH-------------hcchHHHHHH---HccCHHHHHHHHHHHHhcCCCCCeee
Confidence 222 3577764211 111234566666666654 577664
No 207
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=63.20 E-value=1e+02 Score=29.73 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=52.7
Q ss_pred EeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCH
Q 020985 49 VTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPS 128 (319)
Q Consensus 49 ~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~ 128 (319)
..+.+|+.|.++++...+...-...+.+.|. .++.-.+.+.+ ++|.+.+
T Consensus 140 ~~Sgdpekfa~ave~v~~~~~pv~l~s~dpe-------------vmkaaLev~~d--qkPllYa---------------- 188 (467)
T COG1456 140 NRSGDPEKFAEAVEKVAEAGLPVILCSFDPE-------------VMKAALEVVKD--QKPLLYA---------------- 188 (467)
T ss_pred ecCCCHHHHHHHHHHHHhcCCcEEEEeCCHH-------------HHHHHHHHhhc--cCceeee----------------
Confidence 3457899999999888776533334444443 33322222221 1222211
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhc
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERN 167 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~ 167 (319)
.-+.-+....++|.++++|+++|+.+..+++-.+...+
T Consensus 189 -Ate~n~~e~~klav~y~vplvl~a~~dl~~lk~la~~~ 226 (467)
T COG1456 189 -ATEDNWKEFAKLAVEYKVPLVLSAFNDLDDLKNLAVTY 226 (467)
T ss_pred -cccccHHHHHHHHhhcCCcEEEeccCCHHHHHHHHHHH
Confidence 12233677799999999999999987777766655544
No 208
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=62.75 E-value=58 Score=30.96 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=33.6
Q ss_pred eeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-----CHHhHHHHHHHHHhcC
Q 020985 8 DIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-----SLEESKEALAIAETDG 68 (319)
Q Consensus 8 D~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-----~~~~~~~~~~l~~~~~ 68 (319)
|+|.||+...-. .+ ++.+++..++|++-+=.-.. ..+.+...+.+|+++.
T Consensus 110 ~fHiHLYT~g~~----------~~-~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g 164 (353)
T COG2108 110 DFHIHLYTTGIL----------AT-EEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYG 164 (353)
T ss_pred ceeEEEeecccc----------CC-HHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhC
Confidence 799999983221 23 46789999999997755332 3455666777777764
No 209
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=62.20 E-value=1.5e+02 Score=28.23 Aligned_cols=109 Identities=15% Similarity=0.038 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCC--------HHhHHHHHHHHHhcC---C--eEEeeecCCCCcccccccCCCHHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGS--------LEESKEALAIAETDG---R--LFCTVGVHPTRCKEFEESGDPEKHFQA 96 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~--------~~~~~~~~~l~~~~~---~--i~~~~GiHP~~~~~~~~~~~~~~~l~~ 96 (319)
+-++++++++++.|++++|+.... ...++.+.+..++.. . .+..+.-||.+++ .+.+.
T Consensus 102 P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~---------a~a~~ 172 (320)
T COG0276 102 PFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIE---------ALADS 172 (320)
T ss_pred CcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHH---------HHHHH
Confidence 567899999999999999987532 233444333333222 2 3445555555554 23444
Q ss_pred HHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCc
Q 020985 97 LLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLP 148 (319)
Q Consensus 97 l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~P 148 (319)
+++.+.+.-.++.++-.---||.....+.. ..-+.++.+..--++.++|+|
T Consensus 173 I~~~~~~~~~~~~~llfSaHglP~~~~~~G-DpY~~q~~~t~~li~e~lg~~ 223 (320)
T COG0276 173 IREKLAKHPRDDDVLLFSAHGLPKRYIDEG-DPYPQQCQETTRLIAEALGLP 223 (320)
T ss_pred HHHHHHhcCCCCeEEEEecCCCchhhhhcC-CchHHHHHHHHHHHHHHcCCC
Confidence 555554311123455555667775332221 113445555556667777754
No 210
>PRK07213 chlorohydrolase; Provisional
Probab=61.12 E-value=1.3e+02 Score=28.71 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHcCCCc--EEEEeccchHHHHHHHHhccCCCcceEEEeCCCC------HHHHHHHHHCCCeEeecc
Q 020985 139 FELAYATKLP--MFLHMREAAADFCAIVERNKDRFTGGVTHSFTGS------AEDRDKLLTFNMYIGING 200 (319)
Q Consensus 139 lelA~~~~~P--v~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~------~~~~~~~l~~g~y~s~sg 200 (319)
++.+.++|+- ++.|+....++-++++++.+. .+.||-+.+ ..-++++++.|+-++++.
T Consensus 218 v~~~~~~G~~~~~i~H~~~~~~~~i~~la~~g~----~v~~~P~sn~~l~~g~~~v~~l~~~Gv~v~lGT 283 (375)
T PRK07213 218 IERLINLGFKPDFIVHATHPSNDDLELLKENNI----PVVVCPRANASFNVGLPPLNEMLEKGILLGIGT 283 (375)
T ss_pred HHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCC----cEEECCcchhhhccCCccHHHHHHCCCEEEEee
Confidence 5667777766 889999988888999988652 366664322 334688999999888864
No 211
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=59.88 E-value=30 Score=29.89 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=38.1
Q ss_pred ceEEEeCCCCHHHHHHHHH----CCC-eEeeccc--cccChhhHHHHhcCCCCCEEEcCCCCC
Q 020985 173 GGVTHSFTGSAEDRDKLLT----FNM-YIGINGC--SLKTAENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 173 ~~i~H~f~g~~~~~~~~l~----~g~-y~s~sg~--~~~~~~~~~~l~~ip~drlLlETD~P~ 228 (319)
.+-+|+ ..+.+.++++ +|+ -+-+||. ++-...+++++..++-..+++||..--
T Consensus 70 ag~f~~---P~eVaeRL~ei~K~~g~d~vRiSG~EP~l~~EHvlevIeLl~~~tFvlETNG~~ 129 (228)
T COG5014 70 AGDFLS---PEEVAERLLEISKKRGCDLVRISGAEPILGREHVLEVIELLVNNTFVLETNGLM 129 (228)
T ss_pred cccccC---HHHHHHHHHHHHHhcCCcEEEeeCCCccccHHHHHHHHHhccCceEEEEeCCeE
Confidence 345555 6667777753 465 4678886 455566789999999999999999865
No 212
>PRK04326 methionine synthase; Provisional
Probab=59.31 E-value=1.6e+02 Score=27.65 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=53.8
Q ss_pred HHHHHHHHHH-HcCCCcEEEEec-cchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHC--CCeEeecc---ccc--
Q 020985 133 KYFEKQFELA-YATKLPMFLHMR-EAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF--NMYIGING---CSL-- 203 (319)
Q Consensus 133 ~vf~~qlelA-~~~~~Pv~iH~r-~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~--g~y~s~sg---~~~-- 203 (319)
+.+...++.+ ...+..+.+|+- .....+++.+.+.+.+ .+-+-..++..+.++.+.+. |-.+.++- ...
T Consensus 193 ~~~~~~l~~~~~~~~~~v~lH~C~G~~~~~~~~l~~~~vd--~i~~d~~~~~~~~l~~~~~~~~~~~l~~Gvv~~~~~~~ 270 (330)
T PRK04326 193 EIAVEALNRIVKGINAKLGLHVCYGDYSRIAPYILEFPVD--QFDLEFANGNYKLLDLLKEYGFDKELGLGVIDVHSARV 270 (330)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCCcHHHHHHHHhCCCC--EEEEEeCCCCchhHHHhhccCCCCeEEeEEEeCCCCCC
Confidence 4444444333 234678899986 5677788888776532 22333334444556666554 43333321 111
Q ss_pred cCh-----hhHHHHhcCCCCCEEEcCCCCC
Q 020985 204 KTA-----ENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 204 ~~~-----~~~~~l~~ip~drlLlETD~P~ 228 (319)
-+. +++++++.++.+++++-+||.+
T Consensus 271 ~~~e~v~~~v~~~~~~~~~~~~~lsp~Cgl 300 (330)
T PRK04326 271 ESVEEIKEAIKKGLEYVPPEKLYINPDCGL 300 (330)
T ss_pred CCHHHHHHHHHHHHHhCChhhEEECCCCCC
Confidence 111 1246777788899999999987
No 213
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=59.27 E-value=1.5e+02 Score=27.29 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc--CCeEEeeecCCCCcccccccCCCHHHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD--GRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLA 101 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~--~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l 101 (319)
.+..+++.+.+.||+.+++.|+ +.++..++++.+.+. +++-..+|+=.... ++.++ +-+..
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~---------~~~i~-~a~~a 89 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNAT---------EEAIS-LTKFA 89 (285)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccH---------HHHHH-HHHHH
Confidence 4567788888899999998875 456677777665443 33333445421111 12232 22333
Q ss_pred HhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 102 KEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 102 ~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
++ -.+-+| -+...+|. . . .|.++++..-.+|...++||+|..
T Consensus 90 ~~----~Gad~v-~v~pP~y~-~-~---~~~~i~~~~~~i~~~~~~pi~lYn 131 (285)
T TIGR00674 90 ED----VGADGF-LVVTPYYN-K-P---TQEGLYQHFKAIAEEVDLPIILYN 131 (285)
T ss_pred HH----cCCCEE-EEcCCcCC-C-C---CHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 112223 22334432 1 1 356777777788888899999886
No 214
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=59.16 E-value=1.6e+02 Score=27.63 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=63.6
Q ss_pred CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHc--CCCcEEEEec-cch----------HHHHHHHHhccCCCcceE
Q 020985 109 KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYA--TKLPMFLHMR-EAA----------ADFCAIVERNKDRFTGGV 175 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~--~~~Pv~iH~r-~a~----------~~~l~il~~~~~~~~~~i 175 (319)
.++-|-|-.|-..... ...+.....+...++...+ -+.++.+|+- +.. ..+++.+.+.+.+ .+-
T Consensus 170 ~~iQiDEP~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd--~~~ 246 (332)
T cd03311 170 RYIQIDEPALAEGLPL-EPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVD--VFF 246 (332)
T ss_pred CEEEeecchhhccCCc-ccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHHHHHhCCCC--EEE
Confidence 3555555544432101 0113345556666655543 3678999996 434 6788877665422 222
Q ss_pred EEeCC---CCHHHHHHHHHCCCeEeecccccc-----Ch-h----hHHHHhcCCCCCEEEcCCCCCc
Q 020985 176 THSFT---GSAEDRDKLLTFNMYIGINGCSLK-----TA-E----NLDVVRGIPIERMMIETDSPYC 229 (319)
Q Consensus 176 ~H~f~---g~~~~~~~~l~~g~y~s~sg~~~~-----~~-~----~~~~l~~ip~drlLlETD~P~~ 229 (319)
+-.-+ ++.+.++.+.. |-.+.++-.-.+ +. + ++++++.+|.+++.+-|||.+.
T Consensus 247 le~~~~~~~~~~~l~~~~~-~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~ 312 (332)
T cd03311 247 LEYDNSRAGGLEPLKELPY-DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFA 312 (332)
T ss_pred EEEcCCCCcchHHHHhCCC-CCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCCC
Confidence 22222 35666665543 434444221111 11 1 2467788899999999999983
No 215
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=58.76 E-value=1.1e+02 Score=25.72 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEeccc-----h---HHHHHHHHhccCCCcceEE---EeCCC
Q 020985 128 SEIQRKYFEKQFELAYATKLPMFLHMREA-----A---ADFCAIVERNKDRFTGGVT---HSFTG 181 (319)
Q Consensus 128 ~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a-----~---~~~l~il~~~~~~~~~~i~---H~f~g 181 (319)
++.-.+.|++.++.|+++|+-+.++.... . .++.+++++.+.+..++.+ |.+..
T Consensus 107 ~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 107 WERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPNVGICFDTGHLIMA 171 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTTEEEEEEHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCcceEEEehHHHHHc
Confidence 34456789999999999999999998642 2 8899999988754334443 55544
No 216
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=58.75 E-value=1.1e+02 Score=28.07 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcC-CeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDG-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
..+..+++++++|++.++++-..+++.....+.++++. ..++.+ =|.-. ++.++++.+.. .+-
T Consensus 103 G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv--~p~t~---------~~Ri~~i~~~a-----~gF 166 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLV--APTTP---------EERIKKIAKQA-----SGF 166 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEE--ETTS----------HHHHHHHHHH------SSE
T ss_pred chHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEE--CCCCC---------HHHHHHHHHhC-----CcE
Confidence 56789999999999999999888899988888888775 223332 23221 13444444332 344
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEec
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFLHMR 154 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~iH~r 154 (319)
+..++-.|.-..+. ....+ +...++..+++ ++||.+=-.
T Consensus 167 iY~vs~~GvTG~~~---~~~~~---l~~~i~~ik~~~~~Pv~vGFG 206 (259)
T PF00290_consen 167 IYLVSRMGVTGSRT---ELPDE---LKEFIKRIKKHTDLPVAVGFG 206 (259)
T ss_dssp EEEESSSSSSSTTS---SCHHH---HHHHHHHHHHTTSS-EEEESS
T ss_pred EEeeccCCCCCCcc---cchHH---HHHHHHHHHhhcCcceEEecC
Confidence 55665566544331 12223 33334444443 688886544
No 217
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=58.73 E-value=72 Score=31.29 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCCEEEEe--CCCHHhHHHHHHHHHhcCC-e--EEeeecCCCCcccccccCCCHHHHHHHHHHHHhccC
Q 020985 32 IATVLSRAWSSGVDRIIVT--GGSLEESKEALAIAETDGR-L--FCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIE 106 (319)
Q Consensus 32 ~~~vl~~~~~~Gv~~~v~~--~~~~~~~~~~~~l~~~~~~-i--~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 106 (319)
.+..++++.++|++-+=+. =.++.+.+..++.++++.. + .-|..+-|. +.. +.+++...++++
T Consensus 100 Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPv--Ht~------e~yv~~akel~~---- 167 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPV--HTL------EYYVELAKELLE---- 167 (472)
T ss_pred HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCc--ccH------HHHHHHHHHHHH----
Confidence 4677889999999844332 2467777888888888863 2 346666773 332 134444444442
Q ss_pred CCCEEEEEeecCCCCC-CCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 107 KGKVVAIGECGLDYDR-LHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 107 ~~~~~aIGEiGLD~~~-~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
.|.|.-- .+....-.=.+.++-.=.+=+++++||.+||..
T Consensus 168 ---------~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~ 208 (472)
T COG5016 168 ---------MGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHA 208 (472)
T ss_pred ---------cCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEeccc
Confidence 3434210 011110011233444445555689999999975
No 218
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=57.95 E-value=1.6e+02 Score=27.46 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCeE-EeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCC---CCCCHHHHH
Q 020985 57 SKEALAIAETDGRLF-CTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRL---HFCPSEIQR 132 (319)
Q Consensus 57 ~~~~~~l~~~~~~i~-~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~---~~~~~~~Q~ 132 (319)
.+...+-+-+.++|. -++|--|....+ +.++-|.++-++ --+.| |.||.-... ...+..+..
T Consensus 102 Lre~ye~aL~~~~VVGLsIgTRPDClpd--------~VldlL~e~~~r-----~~vWv-ELGLQT~h~~Tlk~iNRgHd~ 167 (312)
T COG1242 102 LREMYEQALSEAGVVGLSIGTRPDCLPD--------DVLDLLAEYNKR-----YEVWV-ELGLQTAHDKTLKRINRGHDF 167 (312)
T ss_pred HHHHHHHHhCcCCeeEEeecCCCCCCcH--------HHHHHHHHHhhh-----eEEEE-EeccchhhHHHHHHHhcccch
Confidence 333444444556765 699999998753 567777766542 34677 999985421 011223455
Q ss_pred HHHHHHHHHHHcCCCcEEEEecc-----chHHHHH---HHHhccCCCcce-EEEeCCCCHHHHHHHHHCCCeEeeccccc
Q 020985 133 KYFEKQFELAYATKLPMFLHMRE-----AAADFCA---IVERNKDRFTGG-VTHSFTGSAEDRDKLLTFNMYIGINGCSL 203 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~-----a~~~~l~---il~~~~~~~~~~-i~H~f~g~~~~~~~~l~~g~y~s~sg~~~ 203 (319)
..|.....-++++|+-|+-|.-. ..+++++ ++...+....+. .+|--.|++ +.+....|=+=-++-. -
T Consensus 168 ~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~--m~k~Y~~G~l~~ls~e-e 244 (312)
T COG1242 168 ACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTP--MEKMYEKGRLKFLSLE-E 244 (312)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCCh--HHHHHHcCCceeccHH-H
Confidence 67888889999999999999943 3444544 444443321222 357777765 4444444432222110 0
Q ss_pred cChhhHHHHhcCCCCCEE--EcCCCCC
Q 020985 204 KTAENLDVVRGIPIERMM--IETDSPY 228 (319)
Q Consensus 204 ~~~~~~~~l~~ip~drlL--lETD~P~ 228 (319)
.-....+.++.+|++=++ +-.|+|-
T Consensus 245 Yv~~~~d~le~lpp~vviHRitgd~pr 271 (312)
T COG1242 245 YVELVCDQLEHLPPEVVIHRITGDAPR 271 (312)
T ss_pred HHHHHHHHHHhCCcceEEEEecCCCCc
Confidence 011234788889877554 3456664
No 219
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=57.15 E-value=1.6e+02 Score=27.14 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
..++..+++++++||+.++++-.-+++.......+++|. +-+-+=+-|.-. ++.++++.+.. .+-
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~g-i~~I~lvaPtt~---------~~rl~~i~~~a-----~GF 173 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHG-IDPIFLVAPTTP---------DERLKKIAEAA-----SGF 173 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcC-CcEEEEeCCCCC---------HHHHHHHHHhC-----CCc
Confidence 467888999999999999998888888888888888774 111111223321 24555554432 355
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEe
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFLHM 153 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~iH~ 153 (319)
+..++-.|.-..+.. .. ..+.+.++..+++ ++||.+==
T Consensus 174 iY~vs~~GvTG~~~~-----~~-~~~~~~v~~vr~~~~~Pv~vGF 212 (265)
T COG0159 174 IYYVSRMGVTGARNP-----VS-ADVKELVKRVRKYTDVPVLVGF 212 (265)
T ss_pred EEEEecccccCCCcc-----cc-hhHHHHHHHHHHhcCCCeEEec
Confidence 667766665543311 01 1144444555542 67776544
No 220
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=57.00 E-value=1.3e+02 Score=28.18 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc-hHHHHHHHHhcc
Q 020985 92 KHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA-AADFCAIVERNK 168 (319)
Q Consensus 92 ~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a-~~~~l~il~~~~ 168 (319)
+.++.+++.+.+.......+++|-+- | .+.+.+....+-+..++...+++.||+|.|..+ ...-+++|.++.
T Consensus 67 n~~e~l~~el~~~~~k~~~i~is~~T-D----pyqp~E~~~~ltR~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~ 139 (297)
T COG1533 67 NLLELLERELRKPGPKRTVIAISSVT-D----PYQPIEKEYRLTRKILEILLKYGFPVSIVTKSALVLRDLDLLLELA 139 (297)
T ss_pred hHHHHHHHHHhhccCCceEEEEecCC-C----CCCcchHHHHHHHHHHHHHHHcCCcEEEEECCcchhhhHHHHHhhh
Confidence 46677777665322233455665322 2 345678889999999999999999999999876 344456665543
No 221
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=56.96 E-value=1.6e+02 Score=27.12 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=72.8
Q ss_pred CHHHHHHHHHH-cCCCEEEEeCC-------CHHhHHHHHHHHHhc-C-CeEEeeecCCCCcccccccCCCHHHHHHHHHH
Q 020985 31 DIATVLSRAWS-SGVDRIIVTGG-------SLEESKEALAIAETD-G-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100 (319)
Q Consensus 31 ~~~~vl~~~~~-~Gv~~~v~~~~-------~~~~~~~~~~l~~~~-~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~ 100 (319)
.++++++.+.. .||+.+++.|+ +.++...+++.+.+. + ++-..+|+=.... ++.++ +-+.
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t---------~~ai~-~a~~ 94 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNT---------AEAQE-LAKY 94 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCH---------HHHHH-HHHH
Confidence 45678888888 99999998875 355666666655433 2 3333344411111 12332 2222
Q ss_pred HHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc------chHHHHHHHHhccCCCcce
Q 020985 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE------AAADFCAIVERNKDRFTGG 174 (319)
Q Consensus 101 l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~------a~~~~l~il~~~~~~~~~~ 174 (319)
+++ -.+-+| -+-..+|. . . .|..+++..-++|...++||++..-- -..+++.-|.+. +++
T Consensus 95 a~~----~Gad~v-~v~~P~y~-~-~---~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~----pnv 160 (293)
T PRK04147 95 ATE----LGYDAI-SAVTPFYY-P-F---SFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTL----PKV 160 (293)
T ss_pred HHH----cCCCEE-EEeCCcCC-C-C---CHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcC----CCE
Confidence 221 112222 12334432 1 1 35677777778888889999998521 123444434343 222
Q ss_pred -EEEeCCCCHHHHHHHHH
Q 020985 175 -VTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 175 -i~H~f~g~~~~~~~~l~ 191 (319)
-+..-+|+.....++..
T Consensus 161 vgiK~s~~d~~~~~~~~~ 178 (293)
T PRK04147 161 IGVKQTAGDLYQLERIRK 178 (293)
T ss_pred EEEEeCCCCHHHHHHHHH
Confidence 34444677766666654
No 222
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=56.78 E-value=1.9e+02 Score=28.36 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEE-EEeccchHHHHHHHHhccCCCcce----EEEeCCCCHHHHHHHHHCCCeEeeccc
Q 020985 127 PSEIQRKYFEKQFELAYATKLPMF-LHMREAAADFCAIVERNKDRFTGG----VTHSFTGSAEDRDKLLTFNMYIGINGC 201 (319)
Q Consensus 127 ~~~~Q~~vf~~qlelA~~~~~Pv~-iH~r~a~~~~l~il~~~~~~~~~~----i~H~f~g~~~~~~~~l~~g~y~s~sg~ 201 (319)
+...+.....+.+++|+++++||. .|.-. .+.++++++.......+ ..|+..-+.+.++ +.|.++.+++.
T Consensus 210 p~~ae~~~~~~~~~la~~~g~~vhi~Hiss--~~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~---~~~~~~~~~Pp 284 (443)
T TIGR03178 210 PVFAEVEAIRRTLALAKVTGCRVHVVHLSS--AEAVELITEAKQEGLDVTVETCPHYLTLTAEEVP---DGGTLAKCAPP 284 (443)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEeCCC--HHHHHHHHHHHHCCCcEEEEECccceEecHHHhh---CcCcceEEcCC
Confidence 345567789999999999999984 46643 23345444332111111 3465443444332 24666666665
Q ss_pred cccChh----hHHHHhcCCCCCEEEcCCC-CCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHH
Q 020985 202 SLKTAE----NLDVVRGIPIERMMIETDS-PYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVA 276 (319)
Q Consensus 202 ~~~~~~----~~~~l~~ip~drlLlETD~-P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA 276 (319)
++++. +.+.++.- --..+.||. |+....+. .+.|.. .+..-...-..++.++..+.
T Consensus 285 -lr~~~~~~~l~~~l~~G--~i~~i~SDh~p~~~~~K~---------------~~~~~~-~~~G~~g~e~~l~~~~~~~~ 345 (443)
T TIGR03178 285 -IRDLANQEGLWEALLNG--LIDCVVSDHSPCTPDLKR---------------AGDFFK-AWGGIAGLQSTLDVMFDEAV 345 (443)
T ss_pred -CCChHHHHHHHHHHHcC--CccEEeCCCCCCChHHcC---------------cCChhh-CCCCeeEHHHhHHHHHHHHH
Confidence 33332 23445432 234889998 65211000 000000 00000111122444444433
Q ss_pred HhcCCChHHHHHHHHHHHHHHhcCCC
Q 020985 277 GCKGINDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 277 ~~~~is~~e~~~~~~~~N~~rlf~~~ 302 (319)
.-.+++ .+++.+.+..|..++|++.
T Consensus 346 ~~~~l~-~~~~~~~~t~~pA~~~g~~ 370 (443)
T TIGR03178 346 QKRGLP-LEDIARLMATNPAKRFGLA 370 (443)
T ss_pred HhcCCC-HHHHHHHHhHHHHHHcCCC
Confidence 445799 9999999999999999983
No 223
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=56.55 E-value=6.3 Score=31.24 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=20.1
Q ss_pred eecCCCCCCC---CCCHHHHHHHHHHHHHHHHcCCCcEEEEeccch
Q 020985 115 ECGLDYDRLH---FCPSEIQRKYFEKQFELAYATKLPMFLHMREAA 157 (319)
Q Consensus 115 EiGLD~~~~~---~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~ 157 (319)
+.||.|.... ......+.+.|...|+ +...||.+||+...
T Consensus 55 ~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 55 ALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRSGT 97 (110)
T ss_dssp HCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SCSH
T ss_pred HcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCCCh
Confidence 3466664321 1223455555655544 45689999998654
No 224
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=56.41 E-value=33 Score=37.06 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=40.4
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcCCeEEeeec
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAETDGRLFCTVGV 76 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~~i~~~~Gi 76 (319)
|+++|.|+|....-.+| ...+++++++|++.|+..+.++-. +........+.+++. ++.+-+|+
T Consensus 1 m~Fv~LH~HS~ySlLdg--------~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~-gik~I~G~ 65 (874)
T PRK09532 1 MSFVGLHIHSDYSLLDG--------ASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNK-GIKPIIGN 65 (874)
T ss_pred CCccccccCCcCchhhc--------cCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHc-CCeEEEEE
Confidence 56999999998642333 257899999999999987665422 233333444555554 34344443
No 225
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=55.83 E-value=1.3e+02 Score=25.76 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCCEEEEeCCCHHhHHHHHH-HHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEE
Q 020985 33 ATVLSRAWSSGVDRIIVTGGSLEESKEALA-IAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVV 111 (319)
Q Consensus 33 ~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~-l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 111 (319)
..+++.+.+.|. ++.++|..++..+.+.+ +.++||++.. +|.|+.... +..+++.+.|.+ ..+.++
T Consensus 38 ~~l~~~~~~~~~-~vfllG~~~~v~~~~~~~l~~~yP~l~i-~g~~g~f~~---------~~~~~i~~~I~~--s~~dil 104 (177)
T TIGR00696 38 EELCQRAGKEKL-PIFLYGGKPDVLQQLKVKLIKEYPKLKI-VGAFGPLEP---------EERKAALAKIAR--SGAGIV 104 (177)
T ss_pred HHHHHHHHHcCC-eEEEECCCHHHHHHHHHHHHHHCCCCEE-EEECCCCCh---------HHHHHHHHHHHH--cCCCEE
Confidence 567888888884 67888999888777654 5567897643 245766532 222344444443 356787
Q ss_pred EEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccch
Q 020985 112 AIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAA 157 (319)
Q Consensus 112 aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~ 157 (319)
.||- |- ..|+.+.. +....++.+|++=+..++
T Consensus 105 ~Vgl-G~----------PkQE~~~~---~~~~~~~~~v~~gvGg~f 136 (177)
T TIGR00696 105 FVGL-GC----------PKQEIWMR---NHRHLKPDAVMIGVGGSF 136 (177)
T ss_pred EEEc-CC----------cHhHHHHH---HhHHhCCCcEEEEeceee
Confidence 7752 31 15665543 345556777877655443
No 226
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=55.31 E-value=1.7e+02 Score=26.85 Aligned_cols=136 Identities=15% Similarity=0.110 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCC-------CHHhHHHHHHHHHhc-CCeEEeeecCCCCcccccccCCCHHHHHHHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGG-------SLEESKEALAIAETD-GRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLA 101 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~-------~~~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l 101 (319)
..+.++++.+.+.||+.+++.|+ +.++...+++.+.+. .+++..+|- ... .+.++ +-+..
T Consensus 20 ~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~--~~~---------~~ai~-~a~~a 87 (279)
T cd00953 20 EKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGS--LNL---------EESIE-LARAA 87 (279)
T ss_pred HHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCc--CCH---------HHHHH-HHHHH
Confidence 35667888999999999999876 345666666654433 346655552 111 12332 22223
Q ss_pred HhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc---c---hHHHHHHHHhccCCCcce-
Q 020985 102 KEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE---A---AADFCAIVERNKDRFTGG- 174 (319)
Q Consensus 102 ~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~---a---~~~~l~il~~~~~~~~~~- 174 (319)
++ -.+-+| -+-..||... . .|+.+++..-++|. ++||+|...- . ..+++.-|.+.. +++
T Consensus 88 ~~----~Gad~v-~v~~P~y~~~-~---~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~~~---p~vv 153 (279)
T cd00953 88 KS----FGIYAI-ASLPPYYFPG-I---PEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKKAG---GDII 153 (279)
T ss_pred HH----cCCCEE-EEeCCcCCCC-C---CHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHhcC---CCEE
Confidence 32 122233 2344554211 1 24566666666666 8999998521 1 233443333221 122
Q ss_pred EEEeCCCCHHHHHHHHH
Q 020985 175 VTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 175 i~H~f~g~~~~~~~~l~ 191 (319)
-+---+|+.+...++..
T Consensus 154 giK~s~~d~~~~~~~~~ 170 (279)
T cd00953 154 GVKDTNEDISHMLEYKR 170 (279)
T ss_pred EEEeCccCHHHHHHHHH
Confidence 23344567666666654
No 227
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=55.04 E-value=1.9e+02 Score=27.29 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCcEEEEeccc-hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCC
Q 020985 136 EKQFELAYATKLPMFLHMREA-AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNM 194 (319)
Q Consensus 136 ~~qlelA~~~~~Pv~iH~r~a-~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~ 194 (319)
++.=++++..+.|+++|-... .+++++.+.+++.. +=-.++-+.+.++++++.|+
T Consensus 194 ~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~----~~~~~g~~~e~~~kai~~GI 249 (307)
T PRK05835 194 ERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGD----LKGSKGVPFEFLQESVKGGI 249 (307)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccc----cccccCCCHHHHHHHHHcCc
Confidence 333445777899999999866 45688888877643 22355557889999999984
No 228
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=54.12 E-value=16 Score=32.14 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=31.3
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HhcCC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC-RVFFP 301 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~-rlf~~ 301 (319)
-.|..-..=+..||+.+|++ ++++.+++.+|+. +.|++
T Consensus 143 ISp~aA~~Qv~RVA~argl~-~~~v~~LV~~~t~~~~lG~ 181 (203)
T PRK13995 143 ISPKSAAIQIPAVSKATGIS-ESKLKKIVKDNTEGKTFGV 181 (203)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHhcCCCcCc
Confidence 34667777788999999999 9999999999998 44543
No 229
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=53.22 E-value=57 Score=28.82 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEecc------chHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHC
Q 020985 133 KYFEKQFELAYATKLPMFLHMRE------AAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~------a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~ 192 (319)
.-|+..++++.++++.+.|.... ....+++++++++....++++.+|+ .+.++.+.+.
T Consensus 87 ptL~evl~~~~~~~~~l~ieiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sf~--~~~l~~~~~~ 150 (233)
T cd08582 87 PTLEEYLAIVPKYGKKLFIEIKHPRRGPEAEEELLKLLKESGLLPEQIVIISFD--AEALKRVREL 150 (233)
T ss_pred CCHHHHHHHHHhcCceEEEEeCCCccCccHHHHHHHHHHHcCCCCCCEEEEecC--HHHHHHHHHH
Confidence 34888889998889999999874 2356778888885333588999995 5566666653
No 230
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=52.80 E-value=19 Score=31.34 Aligned_cols=38 Identities=18% Similarity=0.036 Sum_probs=31.1
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-hcCC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCR-VFFP 301 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~r-lf~~ 301 (319)
-.|..-..=+..||+.+|++ ++++.+++.+|+.. +||+
T Consensus 133 IS~~aA~~Qv~RVA~argl~-~~~v~~LV~~~t~~~~lG~ 171 (189)
T PRK14001 133 ISVVNAKLQAPRVAQARNIS-IRQVERLIEDHTDARGLGF 171 (189)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHhcCCCcCC
Confidence 34667777788999999999 99999999999983 4443
No 231
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=51.92 E-value=83 Score=29.18 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc-------hHHHHHHHHhccCC-C-cceEEE-eCCCCHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA-------AADFCAIVERNKDR-F-TGGVTH-SFTGSAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a-------~~~~l~il~~~~~~-~-~~~i~H-~f~g~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-.-.. ...+..+++..... . ..+++| +...+.+.+++.++.||
T Consensus 27 e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf 98 (282)
T TIGR01859 27 EWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGF 98 (282)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCC
Confidence 347778888888899988765321 22333333322111 1 246777 44447888888888875
No 232
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=51.60 E-value=1.9e+02 Score=26.32 Aligned_cols=27 Identities=7% Similarity=0.039 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCcEEEEecc
Q 020985 129 EIQRKYFEKQFELAYAT-KLPMFLHMRE 155 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~-~~Pv~iH~r~ 155 (319)
+.+.+.+...++.+++. ++||+|||.+
T Consensus 57 ~~E~~rl~~~v~~~~~~~~~plsiDT~~ 84 (257)
T TIGR01496 57 EEELNRVVPVIKALRDQPDVPISVDTYR 84 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeCCC
Confidence 44455666777777665 7888888865
No 233
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.54 E-value=55 Score=30.47 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCC-CcceEEEeCCC-CHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDR-FTGGVTHSFTG-SAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~-~~~~i~H~f~g-~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-.-.. .+.+..+++..... ...+++|-=-| +.+.++++++.||
T Consensus 29 e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~Gf 98 (284)
T PRK09195 29 ETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGV 98 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 446677777777777777765321 12223332222111 12355553322 5777777777764
No 234
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=51.28 E-value=48 Score=36.30 Aligned_cols=56 Identities=9% Similarity=0.256 Sum_probs=37.8
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhc
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG-GSLEESKEALAIAETD 67 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~ 67 (319)
|.++|.|||....-.+| ...+++++++|++.|+..+.+.- .+...+....+.+++.
T Consensus 1 m~fv~LHvHS~ySlLDg--------~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~ 57 (973)
T PRK07135 1 MKLINLHTNTEYSFLSS--------TIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKN 57 (973)
T ss_pred CCccccccCccCccccc--------CCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHc
Confidence 45889999998643343 25889999999999998765542 2344444445556554
No 235
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=51.27 E-value=20 Score=31.38 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=31.3
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HhcCC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC-RVFFP 301 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~-rlf~~ 301 (319)
-.|.+-..=+..||+.+|++ ++++.+++.+|+. ++||+
T Consensus 133 IS~~aA~~Qv~RVA~argl~-~~~v~~LI~~~t~~~~lG~ 171 (193)
T PRK00315 133 ISPAAAAYQIPRVAAARQLP-VEQVAQLVAAYTQGPLFGF 171 (193)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHhcCCCccc
Confidence 34667777788999999999 9999999999998 45553
No 236
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=51.25 E-value=52 Score=36.97 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=36.9
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHh
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAET 66 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~ 66 (319)
.+-+|.|+|......+| ..++++++++|++.|+..+.+.-- +...+....+.+++
T Consensus 102 ~krvDLH~HT~~S~~Dg--------~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~ 157 (1213)
T TIGR01405 102 EKRVELHFHTKMSQMDA--------ITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKK 157 (1213)
T ss_pred cceEEeeeCccCccccc--------CCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHh
Confidence 46789999997643343 268899999999999987655421 23344444454443
No 237
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=51.25 E-value=1.7e+02 Score=25.76 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEecc--------chHHH----HHHHHhccCCCcceEEEeCCCCHHHHHHHHHC---
Q 020985 128 SEIQRKYFEKQFELAYATKLPMFLHMRE--------AAADF----CAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF--- 192 (319)
Q Consensus 128 ~~~Q~~vf~~qlelA~~~~~Pv~iH~r~--------a~~~~----l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~--- 192 (319)
...+.+.+.+..++|.++++|+++-..- -..+. ..+..+.+.+ +|-=.|+++.+.++++.+.
T Consensus 104 ~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD---~Ik~~~~~~~~~~~~i~~~~~~ 180 (235)
T cd00958 104 EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGAD---IVKTKYTGDAESFKEVVEGCPV 180 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCC---EEEecCCCCHHHHHHHHhcCCC
Confidence 4567778899999999999999985522 01122 2234344432 2322577788888888864
Q ss_pred CCeEeeccccccCh----hhHHHHhcCCCCCEEEcCCC
Q 020985 193 NMYIGINGCSLKTA----ENLDVVRGIPIERMMIETDS 226 (319)
Q Consensus 193 g~y~s~sg~~~~~~----~~~~~l~~ip~drlLlETD~ 226 (319)
.++++ +|....+. +..+.+...+.+.+++.+..
T Consensus 181 pvv~~-GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i 217 (235)
T cd00958 181 PVVIA-GGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNI 217 (235)
T ss_pred CEEEe-CCCCCCCHHHHHHHHHHHHHcCCcEEEechhh
Confidence 34332 33222222 12344455788889888765
No 238
>PTZ00066 pyruvate kinase; Provisional
Probab=51.22 E-value=1.1e+02 Score=31.11 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTG-GSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
|.+++++-+.+.|++.+.+-- -+++|...+.++.++. |-|+.-+.... ..+-++.|.+.++. .++-
T Consensus 211 D~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~-------g~~~~IiAKIE----~~~av~NldeIl~~--sDGI 277 (513)
T PTZ00066 211 DKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGER-------GRHIKIIPKIE----NIEGLINFDEILAE--SDGI 277 (513)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhC-------CCCceEEEEEC----CHHHHHHHHHHHHh--cCEE
Confidence 555555677889999654322 2577887777776654 22333332221 11466777777764 3455
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
.+|=|-.|+.... . .-...|+++ ++.|.++++||++=|
T Consensus 278 MVARGDLGvEip~-e-~vp~~QK~I----I~~c~~~gkPVIvAT 315 (513)
T PTZ00066 278 MVARGDLGMEIPP-E-KVFLAQKMM----ISKCNVAGKPVITAT 315 (513)
T ss_pred EEEccccccccCh-H-HcchHHHHH----HHHHHHhCCCEEEec
Confidence 7888999988531 1 122467665 789999999999866
No 239
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=51.20 E-value=71 Score=33.05 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCCEEEEeCCCHH--------------hHHHHHHHHHhc--------------CCeEEeeecCCCCccc
Q 020985 32 IATVLSRAWSSGVDRIIVTGGSLE--------------ESKEALAIAETD--------------GRLFCTVGVHPTRCKE 83 (319)
Q Consensus 32 ~~~vl~~~~~~Gv~~~v~~~~~~~--------------~~~~~~~l~~~~--------------~~i~~~~GiHP~~~~~ 83 (319)
+.+.|..+...||+.++++..++. +...++++.++. +++..++..+|....
T Consensus 398 l~~~L~~~~~~Gv~nILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~~~~g~~~~g~~~~~~~~f~ig~A~~P~~~~- 476 (612)
T PRK08645 398 LQSHLLGLHALGIRNVLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQLNEGISYSGKPLGKKTNFSIGGAFNPNVRN- 476 (612)
T ss_pred HHHHHHHHHHcCCceEEEccCCCCCCCCCCCCCCCccccHHHHHHHHHHHhCCCCcCCCccCCCCceeeeEEeCCCCCC-
Confidence 456677778889988887755431 124455555542 234555666776432
Q ss_pred ccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 84 FEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 84 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
.+..++.|.+-+ +.|-||.-.. .-+ ..+.|++.++.++..++||+.=.
T Consensus 477 ------~~~d~~~L~~Ki-------------~aGAdf~iTQ-~~f--d~~~~~~~~~~~~~~~vpIi~GI 524 (612)
T PRK08645 477 ------LDKEVKRLEKKI-------------EAGADYFITQ-PVY--DEELIEELLEATKHLGVPIFIGI 524 (612)
T ss_pred ------hHHHHHHHHHHH-------------HcCCCEEEec-ccC--CHHHHHHHHHHHhcCCCCEEEEe
Confidence 113444444333 3366654211 111 12557777777777788877443
No 240
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=51.02 E-value=55 Score=31.07 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCcEEEEeccc----hHHHHHHHHhccCCCcceEEEeCCCC---HHHH--HHHHH----CCCeEeeccc
Q 020985 135 FEKQFELAYATKLPMFLHMREA----AADFCAIVERNKDRFTGGVTHSFTGS---AEDR--DKLLT----FNMYIGINGC 201 (319)
Q Consensus 135 f~~qlelA~~~~~Pv~iH~r~a----~~~~l~il~~~~~~~~~~i~H~f~g~---~~~~--~~~l~----~g~y~s~sg~ 201 (319)
....++...+.++|+++=|.-+ ..+.++++++++.. .-+++||-|.- .+.+ +.+.+ .|+-+|+|.-
T Consensus 136 ~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~-~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDH 214 (347)
T COG2089 136 DLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNP-DIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDH 214 (347)
T ss_pred ChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCC-CeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccC
Confidence 4566888888999999999855 56778899998753 34678997762 2222 22222 3788888764
No 241
>PLN02765 pyruvate kinase
Probab=50.57 E-value=1.2e+02 Score=30.88 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhcCCeEEeeec-CCCCcccccccCCCHHHHHHHHHHHHhccCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTG-GSLEESKEALAIAETDGRLFCTVGV-HPTRCKEFEESGDPEKHFQALLSLAKEGIEKG 108 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~~~i~~~~Gi-HP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 108 (319)
|.+++.+-+-+.|++.+.+-- -+.+|...+.++..++. . ++.-+.... ..+.++.|.+.++. .+.
T Consensus 208 D~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g-------~~~~~IiaKIE----~~~av~nl~eIi~~--sDg 274 (526)
T PLN02765 208 DKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLG-------LSQTQIFAKIE----NVEGLTHFDEILQE--ADG 274 (526)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcC-------CCCCcEEEEEC----CHHHHHHHHHHHHh--cCE
Confidence 555544455678998654322 26788877777776542 2 222222211 11566777777764 345
Q ss_pred CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 109 KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
-.+|=|-.|+.... . .-...|+++ +..|.++++||+. |
T Consensus 275 IMVARGDLGvEip~-e-~vp~~QK~i----I~~c~~~gKPVI~-T 312 (526)
T PLN02765 275 IILSRGNLGIDLPP-E-KVFLFQKAA----LYKCNMAGKPAVV-T 312 (526)
T ss_pred EEEecCccccccCH-H-HhHHHHHHH----HHHHHHhCCCeEE-e
Confidence 57888988888531 1 123467655 7899999999986 5
No 242
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.32 E-value=2.3e+02 Score=26.93 Aligned_cols=51 Identities=20% Similarity=0.092 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEe------------CC-CHHhHHHHHHHHHhcCCeEEeeecCCCC
Q 020985 30 SDIATVLSRAWSSGVDRIIVT------------GG-SLEESKEALAIAETDGRLFCTVGVHPTR 80 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~------------~~-~~~~~~~~~~l~~~~~~i~~~~GiHP~~ 80 (319)
.+..++++.+.++||+.+=+- +. ...+++.+..+++..++...++-+.|..
T Consensus 25 ~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~ 88 (337)
T PRK08195 25 EQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGI 88 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCc
Confidence 345678889999999865442 11 1235666666655555544333344543
No 243
>TIGR00681 kdpC K+-transporting ATPase, C subunit. This chain has a single predicted transmembrane region near the amino end. It is part of a K+-transport ATPase that contains two other membrane-bound subunits, KdpA and KdpB, and a small subunit KdpF. KdpA is the K+-translocating subunit, KdpB the ATP-hydrolyzing subunit. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit [PubMed:9858692].
Probab=49.73 E-value=21 Score=31.05 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=31.3
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HhcCC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC-RVFFP 301 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~-rlf~~ 301 (319)
-.|..-..=+..||+.+|++ ++++.+++.+|+. +.||+
T Consensus 131 ISp~aA~~Qv~RVA~argl~-~~~v~~LI~~~t~~~~lG~ 169 (187)
T TIGR00681 131 ISPAAAQAQFPRVAKARNIS-PQQLQSLITKHTEGRFLGI 169 (187)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHhcCCCCCc
Confidence 35667777788999999999 9999999999988 44543
No 244
>PRK13997 potassium-transporting ATPase subunit C; Provisional
Probab=49.42 E-value=22 Score=31.11 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=31.3
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HhcCC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC-RVFFP 301 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~-rlf~~ 301 (319)
-.|.+-..=+..||+.+|++ ++++.+++.+|+. +.||+
T Consensus 135 ISp~aA~~Qv~RVA~argls-~~~v~~LV~~~t~~~~lG~ 173 (193)
T PRK13997 135 ISPKAASVQVERISKLTNIP-KETLDQLIKDQTEGAALGL 173 (193)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHccCCCCCc
Confidence 34667777788999999999 9999999999988 44543
No 245
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=48.56 E-value=54 Score=36.71 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=40.0
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcCCeEEeee
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAETDGRLFCTVG 75 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~~i~~~~G 75 (319)
|+++|.|+|....-.++ ...+++++++|++.|+..+.+.-- +........+.+++. ++.+-+|
T Consensus 1 m~fv~LHvHS~ySlLdg--------~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~-gIkpIiG 64 (1170)
T PRK07374 1 MAFVPLHNHSDYSLLDG--------ASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGK-GIKPIIG 64 (1170)
T ss_pred CCcccccccCcCchhhc--------cCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHc-CCeEEEE
Confidence 56899999998642333 257899999999999987766532 233333444445543 3434444
No 246
>PRK14003 potassium-transporting ATPase subunit C; Provisional
Probab=48.39 E-value=26 Score=30.69 Aligned_cols=38 Identities=32% Similarity=0.296 Sum_probs=31.1
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HhcCC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC-RVFFP 301 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~-rlf~~ 301 (319)
-.|.+-..=+..||+.+|++ ++++.+++.+|+. +.||+
T Consensus 136 ISp~aA~~Qv~RVA~argl~-~~~v~~LI~~~t~~~~lG~ 174 (194)
T PRK14003 136 ISPEAARAQIERVAKARGLP-PDQLEILITKNTDGRFLGI 174 (194)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHhhCCCCCC
Confidence 34667777788999999999 9999999999988 44543
No 247
>PLN02433 uroporphyrinogen decarboxylase
Probab=48.36 E-value=2.4e+02 Score=26.64 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcC--CCcEEEEeccchHHHHHHHHhccCCCcceEEE-eCCCCHHHHHHHHHCCCeE--eeccccc-cC
Q 020985 132 RKYFEKQFELAYAT--KLPMFLHMREAAADFCAIVERNKDRFTGGVTH-SFTGSAEDRDKLLTFNMYI--GINGCSL-KT 205 (319)
Q Consensus 132 ~~vf~~qlelA~~~--~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H-~f~g~~~~~~~~l~~g~y~--s~sg~~~-~~ 205 (319)
...+++.++..++. +.|+++|+.+.. .+++.+++.+. . +++ .+.-+..++++.+...+-+ .+++.++ -+
T Consensus 216 ~P~~k~i~~~i~~~~~~~~~ilh~cG~~-~~~~~~~~~~~---~-~i~~d~~~dl~e~~~~~g~~~~l~GNi~p~ll~gt 290 (345)
T PLN02433 216 KPYLEKIVDEVKARHPDVPLILYANGSG-GLLERLAGTGV---D-VIGLDWTVDMADARRRLGSDVAVQGNVDPAVLFGS 290 (345)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCH-HHHHHHHhcCC---C-EEEcCCCCCHHHHHHHhCCCeEEEeCCCchhhCCC
Confidence 34456777777765 689999988765 67788887753 2 444 2235788888877532211 1222222 22
Q ss_pred hh-----hHHHHhcCCCCCEEEcCCCCC
Q 020985 206 AE-----NLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 206 ~~-----~~~~l~~ip~drlLlETD~P~ 228 (319)
++ .+++++.......++-+.+..
T Consensus 291 ~e~i~~~v~~~i~~~~~~g~Il~~Gc~i 318 (345)
T PLN02433 291 KEAIEKEVRDVVKKAGPQGHILNLGHGV 318 (345)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEecCCCC
Confidence 22 346777654455777777654
No 248
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=48.21 E-value=20 Score=31.18 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=30.7
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HhcC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC-RVFF 300 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~-rlf~ 300 (319)
-.|..-..-+..||+.+|++ ++++.+++.+|+. ++||
T Consensus 132 ISp~aA~~Qv~RVA~argls-~~~v~~LV~~~t~~~~~G 169 (185)
T PRK14000 132 ITVDNAKQQVKRIAKERNID-ASKINHLIDENKQASPMA 169 (185)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHhccCCcCC
Confidence 35667777788999999999 9999999999988 4444
No 249
>PRK13996 potassium-transporting ATPase subunit C; Provisional
Probab=48.15 E-value=23 Score=31.08 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=31.1
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHH-HhcCC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC-RVFFP 301 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~-rlf~~ 301 (319)
-.|..-..-+..||+.+|++ ++++.+++.+|+. +.||+
T Consensus 139 ISp~aA~~Qv~RVA~argls-~~~v~~LV~~~t~~~~lG~ 177 (197)
T PRK13996 139 ISVAAAKYQVDRIAKNNNMS-VKDVEDIIDKYTSGKLFGV 177 (197)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHhcCCCcCc
Confidence 34667777788999999999 9999999999988 34443
No 250
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=47.99 E-value=2.2e+02 Score=26.10 Aligned_cols=138 Identities=18% Similarity=0.105 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHc-CCCEEEEeCC-------CHHhHHHHHHHHHhc--CCeEEeeecCCCCcccccccCCCHHHHHHHHHH
Q 020985 31 DIATVLSRAWSS-GVDRIIVTGG-------SLEESKEALAIAETD--GRLFCTVGVHPTRCKEFEESGDPEKHFQALLSL 100 (319)
Q Consensus 31 ~~~~vl~~~~~~-Gv~~~v~~~~-------~~~~~~~~~~l~~~~--~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~ 100 (319)
....+++.+.+. |++.+++.|+ +.++...+++.+.+. .++-..+|+=-.... +.+ ++-+.
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~---------~ai-~~a~~ 91 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLK---------ESQ-ELAKH 91 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHH---------HHH-HHHHH
Confidence 456778888888 9999988876 455666666655443 234344455222211 222 22233
Q ss_pred HHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEeccc------hHHHHHHHHhccCCCcc
Q 020985 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFLHMREA------AADFCAIVERNKDRFTG 173 (319)
Q Consensus 101 l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~iH~r~a------~~~~l~il~~~~~~~~~ 173 (319)
+++ -.+-+| -+--.+|. . . .|.++++..-++|... ++||++..--. ..+++.-|.+.+ .-
T Consensus 92 a~~----~Gad~v-~~~~P~y~-~-~---~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~p---ni 158 (288)
T cd00954 92 AEE----LGYDAI-SAITPFYY-K-F---SFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIP---NV 158 (288)
T ss_pred HHH----cCCCEE-EEeCCCCC-C-C---CHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCC---CE
Confidence 332 011122 12334432 1 1 3566777777778788 89999985311 234444343432 12
Q ss_pred eEEEeCCCCHHHHHHHHH
Q 020985 174 GVTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 174 ~i~H~f~g~~~~~~~~l~ 191 (319)
+-+.--+|+...+.+++.
T Consensus 159 vgiK~s~~d~~~~~~~~~ 176 (288)
T cd00954 159 IGVKFTATDLYDLERIRA 176 (288)
T ss_pred EEEEeCCCCHHHHHHHHH
Confidence 234444567766666654
No 251
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=47.83 E-value=59 Score=37.21 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=39.6
Q ss_pred CCcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhc
Q 020985 3 TIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG-GSLEESKEALAIAETD 67 (319)
Q Consensus 3 ~m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~ 67 (319)
..+.+|.|+|......+| ..++++++++|++.|+..+.+.- .+...+....+.++++
T Consensus 331 ~~KrvdLH~HT~~S~~Dg--------~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~ 388 (1437)
T PRK00448 331 EEKRVELHLHTKMSTMDA--------IPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKA 388 (1437)
T ss_pred ccceEEecccccCccccc--------CCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhc
Confidence 346799999998754444 26899999999999998765542 2244455555556554
No 252
>PLN02540 methylenetetrahydrofolate reductase
Probab=47.82 E-value=1.4e+02 Score=30.72 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSL 54 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~ 54 (319)
.+++.|.+++++||+.++++..++
T Consensus 74 ~L~~~L~~a~~~GIrNILALrGDp 97 (565)
T PLN02540 74 KIDHALETIKSNGIQNILALRGDP 97 (565)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCC
Confidence 567789999999999999886553
No 253
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.47 E-value=1.9e+02 Score=27.12 Aligned_cols=78 Identities=13% Similarity=-0.092 Sum_probs=44.7
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCe
Q 020985 116 CGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMY 195 (319)
Q Consensus 116 iGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y 195 (319)
||-|-+.......+.|...+.+.....++.|+-+++=. +.+..-.....-+..+++..+++....+..+++.|+-
T Consensus 163 iGgDE~~~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~-----d~~~~~~~~~~l~~~~iv~~W~~~~~~~~~~~~~G~~ 237 (326)
T cd06564 163 IGADEYAGDAGYAEAFRAYVNDLAKYVKDKGKTPRVWG-----DGIYYKGDTTVLSKDVIINYWSYGWADPKELLNKGYK 237 (326)
T ss_pred eccccccccCccHHHHHHHHHHHHHHHHHcCCeEEEeC-----CcccCCCCcccCCCCeEEEeCCCcccCHHHHHHCCCc
Confidence 46675432223467788888999999999887765432 2221100001112345666666555667888888764
Q ss_pred Eee
Q 020985 196 IGI 198 (319)
Q Consensus 196 ~s~ 198 (319)
+=.
T Consensus 238 vI~ 240 (326)
T cd06564 238 IIN 240 (326)
T ss_pred EEE
Confidence 433
No 254
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=47.45 E-value=50 Score=31.67 Aligned_cols=61 Identities=8% Similarity=0.220 Sum_probs=44.8
Q ss_pred HHHHHHHHHcC-CCcEEEEeccch-HHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCC-eEeec
Q 020985 135 FEKQFELAYAT-KLPMFLHMREAA-ADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNM-YIGIN 199 (319)
Q Consensus 135 f~~qlelA~~~-~~Pv~iH~r~a~-~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~-y~s~s 199 (319)
|.+.=++++.. +.|+++|-.... .++.+.+..++... =-.++-+.+.++++++.|+ -+-++
T Consensus 214 ~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~----~~~~g~~~e~~~kai~~GI~KINi~ 277 (347)
T PRK13399 214 IDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKM----KETYGVPVEEIQRGIKHGVRKVNID 277 (347)
T ss_pred HHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCc----cccCCCCHHHHHHHHHCCCeEEEeC
Confidence 55556777788 799999998764 58889898887642 2455557889999999984 34443
No 255
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=46.96 E-value=27 Score=30.76 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=30.6
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-hcC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCR-VFF 300 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~r-lf~ 300 (319)
-.|.+-..=+..||+.+|++ ++++.+++.+|+.. .||
T Consensus 142 ISp~aA~~Qv~RVA~argls-~~~v~~LV~~~t~~~~lG 179 (201)
T PRK13999 142 ISPEAALFQVPRVAKARGLP-EDRLRDLVAAQVEGRTLG 179 (201)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHhcCCCCC
Confidence 34667777788999999999 99999999999984 344
No 256
>PRK14002 potassium-transporting ATPase subunit C; Provisional
Probab=46.93 E-value=27 Score=30.41 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=31.0
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-hcCC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCR-VFFP 301 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~r-lf~~ 301 (319)
-.|..-..=+..||+.+|++ ++++.+++.+|+.. .||+
T Consensus 129 ISp~aA~~Qv~RVA~argl~-~~~v~~LV~~~t~~~~lG~ 167 (186)
T PRK14002 129 ISPQAAYVQVKRVAKARGMS-EEKVKQLVDQHVEKPLLGM 167 (186)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHhcCCCCCc
Confidence 34667777788999999999 99999999999884 4443
No 257
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=46.50 E-value=1e+02 Score=28.73 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc-------hHHHH----HHHHhccCCCcceEEEeCCC-CHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA-------AADFC----AIVERNKDRFTGGVTHSFTG-SAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a-------~~~~l----~il~~~~~~~~~~i~H~f~g-~~~~~~~~l~~g~ 194 (319)
+...+.|+.|.+.+-||+|-.-.. ...+. .+.++++ ..+++|.=-| +.+...+.++.||
T Consensus 29 E~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~---vPV~lHlDHg~~~~~~~~ai~~GF 99 (286)
T COG0191 29 ETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG---VPVALHLDHGASFEDCKQAIRAGF 99 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHhcCC
Confidence 457888999999999999998542 12233 3444454 3678887767 8899999999884
No 258
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=46.33 E-value=2.4e+02 Score=26.05 Aligned_cols=138 Identities=20% Similarity=0.154 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCC-------HHhHHHHHHHHHh-c-CCeEEeeecCCCCcccccccCCCHHHHHHHHHHH
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGS-------LEESKEALAIAET-D-GRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLA 101 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~-------~~~~~~~~~l~~~-~-~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l 101 (319)
.+.++++.....||+.+++.|++ .++...+++.+.+ . .++-..+|+=..... +.++.. +..
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~---------~ai~~a-~~A 91 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHD---------ETLELT-KFA 91 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHH---------HHHHHH-HHH
Confidence 45677888889999999988763 4555666654432 2 233223333212111 233322 222
Q ss_pred HhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEecc------chHHHHHHHH-hccCCCcc
Q 020985 102 KEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFLHMRE------AAADFCAIVE-RNKDRFTG 173 (319)
Q Consensus 102 ~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~iH~r~------a~~~~l~il~-~~~~~~~~ 173 (319)
++ -.+-++ -+...||. . . .|..++...-.+|... ++||++..-- -..+++.-|. +.+ . -
T Consensus 92 ~~----~Gad~v-~v~pP~y~-~-~---~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p--n-v 158 (294)
T TIGR02313 92 EE----AGADAA-MVIVPYYN-K-P---NQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCP--N-I 158 (294)
T ss_pred HH----cCCCEE-EEcCccCC-C-C---CHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCC--C-E
Confidence 21 112233 23445442 1 1 3567777777788778 8999998521 1234444343 332 1 1
Q ss_pred eEEEeCCCCHHHHHHHHH
Q 020985 174 GVTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 174 ~i~H~f~g~~~~~~~~l~ 191 (319)
+-+.--+|+...+.+++.
T Consensus 159 ~giK~ss~d~~~~~~~~~ 176 (294)
T TIGR02313 159 VGAKESNKDFEHLNHLFL 176 (294)
T ss_pred EEEEeCCCCHHHHHHHHH
Confidence 223344667776666654
No 259
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=46.27 E-value=73 Score=29.71 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCC-CcceEEEeCCC-CHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDR-FTGGVTHSFTG-SAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~-~~~~i~H~f~g-~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-.-.. .+.+..+++..... ...+.+|-=-| +.+.+++.++.||
T Consensus 29 e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 98 (286)
T PRK12738 29 ETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 446677788888888888755321 22233333221110 12455653322 6777788887774
No 260
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=46.07 E-value=66 Score=35.94 Aligned_cols=39 Identities=23% Similarity=0.471 Sum_probs=29.8
Q ss_pred CcEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEe
Q 020985 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVT 50 (319)
Q Consensus 4 m~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~ 50 (319)
|+++|.|+|......++ ...+++++++|++.|+..+.+.
T Consensus 3 m~fvdLHvHT~yS~ldg--------~~~~~elv~~A~e~G~~avAIT 41 (1151)
T PRK06826 3 MSFVHLHVHTEYSLLDG--------SARIKDLIKRAKELGMDSIAIT 41 (1151)
T ss_pred CcceeccccccCChhhh--------cCCHHHHHHHHHHCCCCEEEEe
Confidence 56999999997632222 2578999999999999876654
No 261
>PRK09228 guanine deaminase; Provisional
Probab=46.06 E-value=3e+02 Score=26.95 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=39.4
Q ss_pred HHHHHcCC----CcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCC------HHHHHHHHHCCCeEeecc
Q 020985 139 FELAYATK----LPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGS------AEDRDKLLTFNMYIGING 200 (319)
Q Consensus 139 lelA~~~~----~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~------~~~~~~~l~~g~y~s~sg 200 (319)
++...++| ..+..|+....++-+++|++.+ ..+.||-..+ ..-+.++++.|+-++++.
T Consensus 253 ~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g----~~v~~~P~sn~~lg~g~~~~~~~~~~Gv~v~lGt 320 (433)
T PRK09228 253 LDVYERYGLLGPRAVFAHCIHLEDRERRRLAETG----AAIAFCPTSNLFLGSGLFDLKRADAAGVRVGLGT 320 (433)
T ss_pred HHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcC----CeEEECCccHHhhcCCCcCHHHHHHCCCeEEEec
Confidence 44445544 3467899988888899998865 2467774332 234678888898888864
No 262
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=45.40 E-value=2.6e+02 Score=26.15 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=67.3
Q ss_pred CEEEEEeecCCCCCC------CCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchH----HHHHHHHhccCCCcceEEEe
Q 020985 109 KVVAIGECGLDYDRL------HFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAA----DFCAIVERNKDRFTGGVTHS 178 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~------~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~----~~l~il~~~~~~~~~~i~H~ 178 (319)
..+-+|-|=-+.++. ..-+++.-+++.++|.|++.++|.|.++|...... +-++...+... ..+++-+
T Consensus 21 PtvL~GSIFY~gHkIV~D~~~G~FDk~~Ae~Li~~q~elsd~TGnp~~~~I~~~s~EA~~kYidFv~~i~d--~PfliDS 98 (296)
T PF02007_consen 21 PTVLIGSIFYNGHKIVEDEKKGIFDKEAAEALINRQEELSDETGNPCIVDIVAESPEAMEKYIDFVAEITD--SPFLIDS 98 (296)
T ss_pred CceEEEeeeecCceeeeccCCCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhhcCC--CCeEecC
Confidence 355666665444321 12346778999999999999999999999986543 33444444332 3456666
Q ss_pred CCCCHHH--HHHHHHC-----CCeEeeccccccChhhHHHHhcCCCCC-EEEcCCC
Q 020985 179 FTGSAED--RDKLLTF-----NMYIGINGCSLKTAENLDVVRGIPIER-MMIETDS 226 (319)
Q Consensus 179 f~g~~~~--~~~~l~~-----g~y~s~sg~~~~~~~~~~~l~~ip~dr-lLlETD~ 226 (319)
-++.... ++..-+. -+|-|++..+ .++-.++++...++. |++--|-
T Consensus 99 ~~~~~R~~a~~yv~E~Gl~dR~IYNSIn~~~--~~~EieaLkes~i~aaIvLaFn~ 152 (296)
T PF02007_consen 99 SSPEVRIAAAKYVTEIGLADRAIYNSINMSI--EDEEIEALKESDIDAAIVLAFNP 152 (296)
T ss_pred CCHHHHHHHHHHHhhhchhhhhhhhcCCCCC--CHHHHHHHHhcCCCEEEEEecCC
Confidence 5443222 2222223 3788888753 223456777665544 4444443
No 263
>PRK08185 hypothetical protein; Provisional
Probab=45.24 E-value=84 Score=29.23 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCCCcEEEEe
Q 020985 135 FEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 135 f~~qlelA~~~~~Pv~iH~ 153 (319)
.+..++.|.+.+.||+|-.
T Consensus 26 ~~avi~AAee~~sPvIl~~ 44 (283)
T PRK08185 26 LRAVVEEAEANNAPAIIAI 44 (283)
T ss_pred HHHHHHHHHHhCCCEEEEe
Confidence 3444444444444544433
No 264
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=45.18 E-value=82 Score=29.68 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccch------HHHHHHHHhccCC-C-cceEEEeCCC-CHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAA------ADFCAIVERNKDR-F-TGGVTHSFTG-SAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~------~~~l~il~~~~~~-~-~~~i~H~f~g-~~~~~~~~l~~g~ 194 (319)
+..+..++.|++.+.||+|-+-... +.+..+++..... . ..+.+|.=-| +.+.+++.++.||
T Consensus 28 e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~Gf 98 (307)
T PRK05835 28 EMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGF 98 (307)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCC
Confidence 3466677888888888887664321 2222233222111 1 2456664333 6777788887773
No 265
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=45.06 E-value=2.4e+02 Score=26.39 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEE-eCCCCHHHHHHHHH
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTH-SFTGSAEDRDKLLT 191 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H-~f~g~~~~~~~~l~ 191 (319)
...+++.++..++.+.+.++|+-+....+++.+++.+.+ ++| -+..+.+.+++.+.
T Consensus 219 ~p~~k~i~~~i~~~g~~~ilH~CG~~~~~~~~l~~~g~d----~ls~d~~~~l~~~~~~~g 275 (340)
T TIGR01463 219 LPYQKRLFAYIKEIGGITVLHICGFTQPILRDIANNGCF----GFSVDMKPGMDHAKRVIG 275 (340)
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCchhhHHHHHHhCCC----EEeecCCCCHHHHHHHcC
Confidence 455678888888888889999887777788888887642 344 23346777777765
No 266
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=44.94 E-value=2.4e+02 Score=25.54 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCCEEEEeCCCHHhHHHHHH-HHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEE
Q 020985 33 ATVLSRAWSSGVDRIIVTGGSLEESKEALA-IAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVV 111 (319)
Q Consensus 33 ~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~-l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 111 (319)
.++++.+...| .++.++|..++..+.+.+ +.++| ++- .+|.|.-+... ++.+++.+.|.+ ..+.++
T Consensus 95 ~~ll~~~~~~~-~~v~llG~~~~v~~~a~~~l~~~y-~l~-i~g~~~Gyf~~--------~e~~~i~~~I~~--s~~dil 161 (243)
T PRK03692 95 EALMARAGKEG-TPVFLVGGKPEVLAQTEAKLRTQW-NVN-IVGSQDGYFTP--------EQRQALFERIHA--SGAKIV 161 (243)
T ss_pred HHHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHHHh-CCE-EEEEeCCCCCH--------HHHHHHHHHHHh--cCCCEE
Confidence 56778887777 467888999988777765 45667 543 35766444321 222344444443 356777
Q ss_pred EEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccch
Q 020985 112 AIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAA 157 (319)
Q Consensus 112 aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~ 157 (319)
.|| |- .+ .|+.+.. +....++.+|++-+..++
T Consensus 162 ~Vg---lG------~P--kQE~~~~---~~~~~~~~~v~~gvGg~f 193 (243)
T PRK03692 162 TVA---MG------SP--KQEIFMR---DCRLVYPDALYMGVGGTY 193 (243)
T ss_pred EEE---CC------Cc--HHHHHHH---HHHHhCCCCEEEEeCeEE
Confidence 774 32 12 5666543 455667889988776554
No 267
>PRK07329 hypothetical protein; Provisional
Probab=44.75 E-value=2.3e+02 Score=25.36 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEEec
Q 020985 132 RKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
...+++.++.|++.|+++=|=+.
T Consensus 164 ~~~~~~i~~~~~~~~~~lEiNt~ 186 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAFELNTK 186 (246)
T ss_pred HHHHHHHHHHHHHcCCeEEEECc
Confidence 56667777777777777766663
No 268
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=44.57 E-value=1.9e+02 Score=24.41 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCEEEEeCC-------CHHh-------------HHHHHHHHHhcC-CeEEeeecCCCCcc
Q 020985 33 ATVLSRAWSSGVDRIIVTGG-------SLEE-------------SKEALAIAETDG-RLFCTVGVHPTRCK 82 (319)
Q Consensus 33 ~~vl~~~~~~Gv~~~v~~~~-------~~~~-------------~~~~~~l~~~~~-~i~~~~GiHP~~~~ 82 (319)
++.++.|++.|++.+|+.-+ .+.+ .+.+++.|.++. +++.+++.-|.+-+
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~ 93 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD 93 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh
Confidence 56789999999999987632 2332 345567777775 56666666554444
No 269
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=43.92 E-value=2.1e+02 Score=25.43 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCC--CCHHHHHHHHHCCCeEeeccccccC
Q 020985 128 SEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFT--GSAEDRDKLLTFNMYIGINGCSLKT 205 (319)
Q Consensus 128 ~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~--g~~~~~~~~l~~g~y~s~sg~~~~~ 205 (319)
.....+..++..++++++|.|++|+.+ +++..+.+.. =+|--. .....+++.+..+..+|+|.. .+
T Consensus 53 ~~~~~~~a~~l~~l~~~~gv~liINd~------~dlA~~~~ad----GVHLg~~d~~~~~~r~~~~~~~iiG~s~~--~s 120 (221)
T PRK06512 53 EATFQKQAEKLVPVIQEAGAAALIAGD------SRIAGRVKAD----GLHIEGNLAALAEAIEKHAPKMIVGFGNL--RD 120 (221)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEeCH------HHHHHHhCCC----EEEECccccCHHHHHHhcCCCCEEEecCC--CC
Confidence 445667888899999999999999975 4555444321 235432 246667776666777887632 12
Q ss_pred hh-hHHHHhcCCCCCEEEc
Q 020985 206 AE-NLDVVRGIPIERMMIE 223 (319)
Q Consensus 206 ~~-~~~~l~~ip~drlLlE 223 (319)
.. ..+ ....+.|.+.++
T Consensus 121 ~~~a~~-A~~~gaDYv~~G 138 (221)
T PRK06512 121 RHGAME-IGELRPDYLFFG 138 (221)
T ss_pred HHHHHH-hhhcCCCEEEEC
Confidence 22 223 234677888776
No 270
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=43.84 E-value=1.4e+02 Score=26.11 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=48.5
Q ss_pred HcCCCcEEEEe-ccchHHHHHHHHhccCCCcceEEEeCCCC--HHHHHHHHHCCCeEeecccc-ccChhhHHHHhcCCCC
Q 020985 143 YATKLPMFLHM-REAAADFCAIVERNKDRFTGGVTHSFTGS--AEDRDKLLTFNMYIGINGCS-LKTAENLDVVRGIPIE 218 (319)
Q Consensus 143 ~~~~~Pv~iH~-r~a~~~~l~il~~~~~~~~~~i~H~f~g~--~~~~~~~l~~g~y~s~sg~~-~~~~~~~~~l~~ip~d 218 (319)
+..++|+-+|. +....+.++.+.+.+. ..+.+|.=+.. .++++.+-+.|+-.|+.-.- +.-.....++.. .|
T Consensus 54 ~~~~~~~DvHLMv~~P~~~i~~~~~~g~--~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~--vD 129 (201)
T PF00834_consen 54 KITDLPLDVHLMVENPERYIEEFAEAGA--DYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQ--VD 129 (201)
T ss_dssp TTSSSEEEEEEESSSGGGHHHHHHHHT---SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCC--SS
T ss_pred hcCCCcEEEEeeeccHHHHHHHHHhcCC--CEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhh--cC
Confidence 33789999999 3445667777777764 36778964432 45556666689887775321 111122334443 78
Q ss_pred CEEEcCCCC
Q 020985 219 RMMIETDSP 227 (319)
Q Consensus 219 rlLlETD~P 227 (319)
.+|+=|=.|
T Consensus 130 ~VlvMsV~P 138 (201)
T PF00834_consen 130 MVLVMSVEP 138 (201)
T ss_dssp EEEEESS-T
T ss_pred EEEEEEecC
Confidence 888877555
No 271
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=43.84 E-value=2e+02 Score=25.52 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCC--CHHHHHHHHHCCCeEeeccccccChhhH
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTG--SAEDRDKLLTFNMYIGINGCSLKTAENL 209 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g--~~~~~~~~l~~g~y~s~sg~~~~~~~~~ 209 (319)
.+.-++..++|++++.|++|+-+- ++..+.+.+ -+|--.. ....+++++..+..+|.|.. +.+..
T Consensus 51 ~~~a~~~~~lc~~~~v~liINd~~------dlA~~~~Ad----GVHlGq~D~~~~~ar~~~~~~~iIG~S~h---~~eea 117 (211)
T COG0352 51 LALAEKLRALCQKYGVPLIINDRV------DLALAVGAD----GVHLGQDDMPLAEARELLGPGLIIGLSTH---DLEEA 117 (211)
T ss_pred HHHHHHHHHHHHHhCCeEEecCcH------HHHHhCCCC----EEEcCCcccchHHHHHhcCCCCEEEeecC---CHHHH
Confidence 566788899999999999998762 333333321 3443222 45666777777777777643 22222
Q ss_pred HHHhcCCCCCEEEcCCCCC
Q 020985 210 DVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 210 ~~l~~ip~drlLlETD~P~ 228 (319)
+.+.+.+.|.|.++.=+|.
T Consensus 118 ~~A~~~g~DYv~~GpifpT 136 (211)
T COG0352 118 LEAEELGADYVGLGPIFPT 136 (211)
T ss_pred HHHHhcCCCEEEECCcCCC
Confidence 2333345677766654444
No 272
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=43.61 E-value=3.1e+02 Score=26.49 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=74.8
Q ss_pred CHHhHHHHHHHHHhcCCe--EEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHH
Q 020985 53 SLEESKEALAIAETDGRL--FCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEI 130 (319)
Q Consensus 53 ~~~~~~~~~~l~~~~~~i--~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~ 130 (319)
..++|+..+++-+++|.+ +-.-|=-|-..+. +.++.|.+-|++ +.+-+++-||--..= ..-
T Consensus 142 ~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~--------~~L~~ll~~L~~-IpHv~iiRi~TR~pv--------v~P 204 (369)
T COG1509 142 NKEEWDKALDYIAAHPEIREVLLSGGDPLSLSD--------KKLEWLLKRLRA-IPHVKIIRIGTRLPV--------VLP 204 (369)
T ss_pred CHHHHHHHHHHHHcCchhheEEecCCCccccCH--------HHHHHHHHHHhc-CCceeEEEeecccce--------ech
Confidence 678999999999999854 2345656776553 345554444442 334444445421111 111
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEec--c------chHHHHHHHHhccCC--CcceEEEeCCCCHHHHHHHHHC
Q 020985 131 QRKYFEKQFELAYATKLPMFLHMR--E------AAADFCAIVERNKDR--FTGGVTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 131 Q~~vf~~qlelA~~~~~Pv~iH~r--~------a~~~~l~il~~~~~~--~~~~i~H~f~g~~~~~~~~l~~ 192 (319)
.++....+++-++..+||.|++. . ...+..+.|...+.. +..+++-+-|.+.+.++++...
T Consensus 205 -~RIt~~L~~~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~ 275 (369)
T COG1509 205 -QRITDELCEILGKSRKPVWLVTHFNHPNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRA 275 (369)
T ss_pred -hhccHHHHHHHhccCceEEEEcccCChhhcCHHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHH
Confidence 24457778888887899887763 2 235566777776543 2355667889999998777753
No 273
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=43.27 E-value=70 Score=30.69 Aligned_cols=60 Identities=8% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHHcC-CCcEEEEeccch-HHHHHHHHhccCCCcceEEE-eCCCCHHHHHHHHHCCC-eEeec
Q 020985 135 FEKQFELAYAT-KLPMFLHMREAA-ADFCAIVERNKDRFTGGVTH-SFTGSAEDRDKLLTFNM-YIGIN 199 (319)
Q Consensus 135 f~~qlelA~~~-~~Pv~iH~r~a~-~~~l~il~~~~~~~~~~i~H-~f~g~~~~~~~~l~~g~-y~s~s 199 (319)
|++.=++++.. +.|+++|-.... .+++..+..++.+ +| .++-+.+.++++++.|+ -+-++
T Consensus 214 fdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~-----~~~~~G~~~e~i~~ai~~GI~KINi~ 277 (347)
T PRK09196 214 IDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGD-----MPETYGVPVEEIQEGIKHGVRKVNID 277 (347)
T ss_pred HHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCC-----ccccCCCCHHHHHHHHHCCCceEEeC
Confidence 45556677788 899999998754 6788888877643 33 44457888999999984 34443
No 274
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=43.00 E-value=2.5e+02 Score=25.18 Aligned_cols=87 Identities=8% Similarity=0.097 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcEE-EEecc----------------chHHHHHHHHhccCCCcceEEEe-------CCCCHH
Q 020985 129 EIQRKYFEKQFELAYATKLPMF-LHMRE----------------AAADFCAIVERNKDRFTGGVTHS-------FTGSAE 184 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~-iH~r~----------------a~~~~l~il~~~~~~~~~~i~H~-------f~g~~~ 184 (319)
+...+.+++.+++|+++|.+.+ +|... ...++.++.++++ .++.++. +-.+.+
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g---v~l~iE~~~~~~~~~~~t~~ 162 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIG---MDLILEPLTPYESNVVCNAN 162 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC---CEEEEecCCCCcccccCCHH
Confidence 3456789999999999999974 55421 1234445555543 2445553 123577
Q ss_pred HHHHHHHC------CCeEeeccccccChhhHHHHhcCCCCC
Q 020985 185 DRDKLLTF------NMYIGINGCSLKTAENLDVVRGIPIER 219 (319)
Q Consensus 185 ~~~~~l~~------g~y~s~sg~~~~~~~~~~~l~~ip~dr 219 (319)
.+.++++. ++++.+.-.........+.++.++ +|
T Consensus 163 ~~~~l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~-~r 202 (275)
T PRK09856 163 DVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLG-DK 202 (275)
T ss_pred HHHHHHHHcCCCcceeEEeecchhcCCCCHHHHHHHhC-Cc
Confidence 78777773 344555322222333445666654 44
No 275
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.95 E-value=2.5e+02 Score=25.17 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=47.9
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHH-------HHHHHHH-cCCCcEEEEe-----ccchHHHHHHHHhccCCCcceEE
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFE-------KQFELAY-ATKLPMFLHM-----REAAADFCAIVERNKDRFTGGVT 176 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~-------~qlelA~-~~~~Pv~iH~-----r~a~~~~l~il~~~~~~~~~~i~ 176 (319)
+-+| |+|+.+.-.-......|....+ ..++..+ ..++|+++++ .....+.++.+++.+. ..+++
T Consensus 31 ad~i-Elgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Ga--dgvii 107 (244)
T PRK13125 31 VDIL-ELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGA--DGVLF 107 (244)
T ss_pred CCEE-EECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCC--CEEEE
Confidence 5577 9999986432223445544433 2344444 3689997775 3345566677777664 36678
Q ss_pred Ee--CC---CCHHHHHHHHHCCCeEee
Q 020985 177 HS--FT---GSAEDRDKLLTFNMYIGI 198 (319)
Q Consensus 177 H~--f~---g~~~~~~~~l~~g~y~s~ 198 (319)
|. +. -..+.++.+-+.|+-..+
T Consensus 108 ~dlp~e~~~~~~~~~~~~~~~Gl~~~~ 134 (244)
T PRK13125 108 PDLLIDYPDDLEKYVEIIKNKGLKPVF 134 (244)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 85 31 112333444456765554
No 276
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=42.84 E-value=2.1e+02 Score=24.23 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccccChh
Q 020985 128 SEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAE 207 (319)
Q Consensus 128 ~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~~~ 207 (319)
...-.+..+...+++++++.|++||.+- ++..+.+. ..+.+-.-......+++.+..+..+|.|.- +.+
T Consensus 38 ~~~~~~~a~~l~~~~~~~~~~liin~~~------~la~~~~~--dGvHl~~~~~~~~~~r~~~~~~~~ig~S~h---~~~ 106 (180)
T PF02581_consen 38 DEELLELARRLAELCQKYGVPLIINDRV------DLALELGA--DGVHLGQSDLPPAEARKLLGPDKIIGASCH---SLE 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTGCEEEES-H------HHHHHCT---SEEEEBTTSSSHHHHHHHHTTTSEEEEEES---SHH
T ss_pred ccHHHHHHHHHHHHhhcceEEEEecCCH------HHHHhcCC--CEEEecccccchHHhhhhcccceEEEeecC---cHH
Confidence 4455677888999999999999999952 44555542 132232333357778888888889998753 222
Q ss_pred hHHHHhcCCCCCEEEcCCCC
Q 020985 208 NLDVVRGIPIERMMIETDSP 227 (319)
Q Consensus 208 ~~~~l~~ip~drlLlETD~P 227 (319)
-.+.+...+.|.+++..=+|
T Consensus 107 e~~~a~~~g~dYv~~gpvf~ 126 (180)
T PF02581_consen 107 EAREAEELGADYVFLGPVFP 126 (180)
T ss_dssp HHHHHHHCTTSEEEEETSS-
T ss_pred HHHHhhhcCCCEEEECCccC
Confidence 23344456678888865333
No 277
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=42.54 E-value=62 Score=31.03 Aligned_cols=61 Identities=8% Similarity=0.214 Sum_probs=44.3
Q ss_pred HHHHHHHHHcC-CCcEEEEeccch-HHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCC-eEeec
Q 020985 135 FEKQFELAYAT-KLPMFLHMREAA-ADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNM-YIGIN 199 (319)
Q Consensus 135 f~~qlelA~~~-~~Pv~iH~r~a~-~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~-y~s~s 199 (319)
|.+.=++++.. +.|+++|-.... .+.++++.+++... =-.++-+.+.++++++.|+ -+-++
T Consensus 212 ~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~----~~~~g~p~e~i~~ai~~GI~KVNi~ 275 (347)
T TIGR01521 212 IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEI----KETYGVPVEEIVEGIKYGVRKVNID 275 (347)
T ss_pred HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccc----cccCCCCHHHHHHHHHCCCeeEEeC
Confidence 45556677777 799999998765 48889999987542 2345557889999999984 34443
No 278
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.31 E-value=93 Score=28.95 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEec
Q 020985 133 KYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r 154 (319)
+..+..++.|.+.+.||+|-.-
T Consensus 29 e~~~avi~AAee~~sPvIlq~~ 50 (284)
T PRK12857 29 EIVQAIVAAAEAEKSPVIIQAS 50 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEec
Confidence 3456666777777777666553
No 279
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=42.13 E-value=3.2e+02 Score=26.20 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcC--CCcEEEEec-cchHHHHHHHHhccCCCcceEEEeCC---CCHHHHHHHHHCCCeEeec---cc
Q 020985 131 QRKYFEKQFELAYAT--KLPMFLHMR-EAAADFCAIVERNKDRFTGGVTHSFT---GSAEDRDKLLTFNMYIGIN---GC 201 (319)
Q Consensus 131 Q~~vf~~qlelA~~~--~~Pv~iH~r-~a~~~~l~il~~~~~~~~~~i~H~f~---g~~~~~~~~l~~g~y~s~s---g~ 201 (319)
..+.+...++.+.+- +.++.+|+- ...+++++.+.+.+. .++..-|. ++.+.+++....+--++++ +.
T Consensus 214 ~~~~~~~~~~~l~~~~~~~~l~l~tyfg~~~~~~~~l~~l~V---d~l~le~~~~~~~l~~l~~~~~~~k~l~lGvId~r 290 (360)
T cd03312 214 WLAAFKRAYEELAKAAPGLKLLLATYFGSLGENLDLLASLPV---DGLHLDLVRGPENLEAVLKAGFADKVLSAGVVDGR 290 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEecccchHHHHHHHHcCCC---CEEEEEecCCcccHHHHHhcCCCCCEEEEEEEcCC
Confidence 346666666666543 467999986 445677777777653 23333333 3344443322112223332 21
Q ss_pred c-cc-C-h----hhHHHHhcCCCCCEEEcCCCCCc
Q 020985 202 S-LK-T-A----ENLDVVRGIPIERMMIETDSPYC 229 (319)
Q Consensus 202 ~-~~-~-~----~~~~~l~~ip~drlLlETD~P~~ 229 (319)
. .. + . .+.++.+.+ .+||.+-|||.+.
T Consensus 291 n~~~ed~e~i~~~i~~a~~~v-~~~l~lsp~CgL~ 324 (360)
T cd03312 291 NIWRADLAASLALLETLAAIL-GDRLVVSPSCSLL 324 (360)
T ss_pred CCCcCCHHHHHHHHHHHHHHh-cCcEEEECCCCCc
Confidence 1 11 1 1 123566667 7999999999984
No 280
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=42.00 E-value=93 Score=28.95 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEe
Q 020985 133 KYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~ 153 (319)
+..+..++.|.+.+.||+|-.
T Consensus 29 e~~~avi~AAee~~sPvIiq~ 49 (284)
T PRK12737 29 ETLQVVVETAAELRSPVILAG 49 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEc
Confidence 335555666666666666544
No 281
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=41.68 E-value=1.4e+02 Score=25.93 Aligned_cols=57 Identities=19% Similarity=0.082 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCCcEEEEeccc-------hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHC
Q 020985 134 YFEKQFELAYATKLPMFLHMREA-------AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 134 vf~~qlelA~~~~~Pv~iH~r~a-------~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~ 192 (319)
-|+..++++++.++++.|..... ...+.+++++++....++++.+| +.+.++.+.+.
T Consensus 88 tl~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~~v~~~Sf--~~~~l~~~~~~ 151 (229)
T cd08562 88 TLADVLELARELGLGLNLEIKPDPGDEALTARVVAAALRELWPHASKLLLSSF--SLEALRAARRA 151 (229)
T ss_pred CHHHHHHHHHhcCCEEEEEECCCCCccHHHHHHHHHHHHHhcCCcCCEEEECC--CHHHHHHHHHh
Confidence 47778888888888899888643 23467888888642257899999 66777776654
No 282
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=41.62 E-value=59 Score=25.93 Aligned_cols=33 Identities=9% Similarity=-0.106 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEeccchHHHHH
Q 020985 130 IQRKYFEKQFELAYATKLPMFLHMREAAADFCA 162 (319)
Q Consensus 130 ~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~ 162 (319)
.+.......++.+.+.+.||.|||.......--
T Consensus 62 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 94 (138)
T smart00195 62 PYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT 94 (138)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence 344444455566667899999999876554443
No 283
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=41.43 E-value=1.1e+02 Score=28.51 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCC-CcceEEEeCCC-CHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDR-FTGGVTHSFTG-SAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~-~~~~i~H~f~g-~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-.-.. ...+..+++..... ...+.+|-=-| +.+.+++.++.||
T Consensus 27 e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 96 (282)
T TIGR01858 27 ETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGV 96 (282)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 446677788888888887766332 12233333222111 12455653322 5677788887774
No 284
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=41.34 E-value=94 Score=28.97 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc-------hHHHHHHHHhccCCC---cceEEEeCC-CCHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA-------AADFCAIVERNKDRF---TGGVTHSFT-GSAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a-------~~~~l~il~~~~~~~---~~~i~H~f~-g~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-.-.. ...+..+++...... ..+++|-=- .+.+.+++.++.||
T Consensus 29 e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~Gf 101 (286)
T PRK08610 29 EFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGF 101 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 446777888888889988876431 223334443321111 245666332 26888888888874
No 285
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=41.27 E-value=90 Score=29.16 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc-------hHHHHHHHHhccCC---CcceEEEeCCCCHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA-------AADFCAIVERNKDR---FTGGVTHSFTGSAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a-------~~~~l~il~~~~~~---~~~~i~H~f~g~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-.-.. .+.+..+++.+... ...+++|-=-|+.+.++++++.||
T Consensus 29 e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~Gf 100 (293)
T PRK07315 29 EWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGY 100 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCC
Confidence 446777888888888888776331 12223333222110 124566655557778888888774
No 286
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=41.06 E-value=2.9e+02 Score=25.46 Aligned_cols=136 Identities=18% Similarity=0.085 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHcC-CCEEEEeCC-------CHHhHHHHHHHHHhc--CC--eEEeeecCCCCcccccccCCCHHHHHHHH
Q 020985 31 DIATVLSRAWSSG-VDRIIVTGG-------SLEESKEALAIAETD--GR--LFCTVGVHPTRCKEFEESGDPEKHFQALL 98 (319)
Q Consensus 31 ~~~~vl~~~~~~G-v~~~v~~~~-------~~~~~~~~~~l~~~~--~~--i~~~~GiHP~~~~~~~~~~~~~~~l~~l~ 98 (319)
.+...++.....| ++.+++.|+ +.++..++++.+.+. .+ ++.++|-.. .. +.++ +-
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~--t~---------~~i~-la 89 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVN--LK---------EAVE-LG 89 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCC--HH---------HHHH-HH
Confidence 4566788888899 999988875 456677777655433 23 344444221 11 2332 22
Q ss_pred HHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEec-cc-----hHHHHHHHHhccCCC
Q 020985 99 SLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFLHMR-EA-----AADFCAIVERNKDRF 171 (319)
Q Consensus 99 ~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~iH~r-~a-----~~~~l~il~~~~~~~ 171 (319)
+..++ -.+.+| -+...+|.. . .|++++...-++|... ++||+|-.- .. ..+++.-|.+.
T Consensus 90 ~~a~~----~Gad~v-~v~~P~y~~--~---~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~---- 155 (290)
T TIGR00683 90 KYATE----LGYDCL-SAVTPFYYK--F---SFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKN---- 155 (290)
T ss_pred HHHHH----hCCCEE-EEeCCcCCC--C---CHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcC----
Confidence 33332 112223 223344421 1 3567777777887776 799997652 11 23444434333
Q ss_pred cce-EEEeCCCCHHHHHHHHHC
Q 020985 172 TGG-VTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 172 ~~~-i~H~f~g~~~~~~~~l~~ 192 (319)
+++ -+..-+|+...+.++...
T Consensus 156 pnv~giK~s~~d~~~~~~~~~~ 177 (290)
T TIGR00683 156 PKVLGVKFTAGDFYLLERLKKA 177 (290)
T ss_pred CCEEEEEeCCCCHHHHHHHHHh
Confidence 233 345567787777777653
No 287
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=40.73 E-value=3e+02 Score=25.54 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=35.9
Q ss_pred cCCCcEEEEeccc--hHHHHHHHHhccCCCcceEEEeCCCC----------HHHHHHHHHCCCeEeecc
Q 020985 144 ATKLPMFLHMREA--AADFCAIVERNKDRFTGGVTHSFTGS----------AEDRDKLLTFNMYIGING 200 (319)
Q Consensus 144 ~~~~Pv~iH~r~a--~~~~l~il~~~~~~~~~~i~H~f~g~----------~~~~~~~l~~g~y~s~sg 200 (319)
++|.-.+.|+... .++.++++++.+. .+.||-+.+ ..-++++++.|+-++++.
T Consensus 207 ~~g~~ri~Hg~~l~~~~~~i~~l~~~gi----~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igT 271 (324)
T TIGR01430 207 DLGATRIGHGVRALEDPELLKRLAQENI----TLEVCPTSNVALGVVKSLAEHPLRRFLEAGVKVTLNS 271 (324)
T ss_pred HcCchhcchhhhhccCHHHHHHHHHcCc----eEEECCcccccccccCCcccChHHHHHHCCCEEEECC
Confidence 4555568898876 4568888887642 355554332 233688999999999865
No 288
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=40.58 E-value=1.1e+02 Score=29.51 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCCC--cceEEEeCCC-CHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDRF--TGGVTHSFTG-SAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~~--~~~i~H~f~g-~~~~~~~~l~~g~ 194 (319)
+.++..++.|.+.+.||+|-.-.. ...+..+++...... ..+.+|-=-| +.+.+++.++.||
T Consensus 27 e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GF 97 (347)
T TIGR01521 27 EQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGF 97 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 557888999999999999877432 122333333222111 2456663333 7888999999884
No 289
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=40.37 E-value=3.1e+02 Score=29.36 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHc-C--CCcEEEEec-cchHHHHHHHHhccCCCcceEEEeCCCC-HHHHHHH---HHCCCeEeeccccc
Q 020985 132 RKYFEKQFELAYA-T--KLPMFLHMR-EAAADFCAIVERNKDRFTGGVTHSFTGS-AEDRDKL---LTFNMYIGINGCSL 203 (319)
Q Consensus 132 ~~vf~~qlelA~~-~--~~Pv~iH~r-~a~~~~l~il~~~~~~~~~~i~H~f~g~-~~~~~~~---l~~g~y~s~sg~~~ 203 (319)
.+.....++++.+ . +..|.+|+- ..+.++++.|.+...+ ++..=++-+ .+.++.+ +..+--++++..-.
T Consensus 625 l~~av~af~~~~~~v~~~~~I~~H~C~gnf~~I~~~i~~l~~D---~~~~E~~rs~~~~l~~l~~~~~~~~~IglGViD~ 701 (766)
T PLN02475 625 LDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDAD---VITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI 701 (766)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHHHHhCCCC---EEEEEcCCCChhhhHHHHhhcCCCCeEEEEEEcC
Confidence 3444444566665 2 455777875 5688888888665432 222222222 2333443 22222233322211
Q ss_pred c-----C-hh----hHHHHhcCCCCCEEEcCCCCC
Q 020985 204 K-----T-AE----NLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 204 ~-----~-~~----~~~~l~~ip~drlLlETD~P~ 228 (319)
+ + .+ ++++++.+|++||.+.+||.+
T Consensus 702 ~s~~ves~Eei~~rI~~a~~~v~~e~l~vnPDCGl 736 (766)
T PLN02475 702 HSPRIPSTEEIADRINKMLAVLESNILWVNPDCGL 736 (766)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCcceEEEcCCCCc
Confidence 1 1 12 347888999999999999998
No 290
>PRK13994 potassium-transporting ATPase subunit C; Provisional
Probab=40.13 E-value=33 Score=30.69 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=30.7
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-hcC
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCR-VFF 300 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~r-lf~ 300 (319)
-.|.+-..=+..+|+.+|++ ++++.+++.+|+.+ .||
T Consensus 163 ISp~aA~~Qv~RVA~argls-~~~V~~LV~~~t~~~~lG 200 (222)
T PRK13994 163 ISPAYADLQVHRVAARNGLN-VARVQKLVDEHTTGRTLG 200 (222)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHccCCCcc
Confidence 35667777788999999999 99999999999883 444
No 291
>PRK06801 hypothetical protein; Provisional
Probab=40.06 E-value=1.1e+02 Score=28.62 Aligned_cols=20 Identities=15% Similarity=0.477 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCCcEEEEe
Q 020985 134 YFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 134 vf~~qlelA~~~~~Pv~iH~ 153 (319)
..+..++.|.+.+.||+|-.
T Consensus 30 ~~~avi~AAe~~~~PvIl~~ 49 (286)
T PRK06801 30 FLRALFAAAKQERSPFIINI 49 (286)
T ss_pred HHHHHHHHHHHHCCCEEEEe
Confidence 34555566666666666544
No 292
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=39.81 E-value=2.4e+02 Score=24.11 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccccCh-hh
Q 020985 130 IQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTA-EN 208 (319)
Q Consensus 130 ~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~~-~~ 208 (319)
...+..++..+++..++.|+++|. -++++.+.+.+ .+++|...-....++++.+.|..++++.. +. +.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~------~~~~a~~~gad--~vh~~~~~~~~~~~~~~~~~~~~~g~~~~---t~~e~ 117 (212)
T PRK00043 49 ERLELARALKELCRRYGVPLIVND------RVDLALAVGAD--GVHLGQDDLPVADARALLGPDAIIGLSTH---TLEEA 117 (212)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCC--EEecCcccCCHHHHHHHcCCCCEEEEeCC---CHHHH
Confidence 334456666678888999999983 34556666532 34444433345666777777888887643 22 23
Q ss_pred HHHHhcCCCCCEEEc
Q 020985 209 LDVVRGIPIERMMIE 223 (319)
Q Consensus 209 ~~~l~~ip~drlLlE 223 (319)
+++. ....|.+.+.
T Consensus 118 ~~a~-~~gaD~v~~~ 131 (212)
T PRK00043 118 AAAL-AAGADYVGVG 131 (212)
T ss_pred HHHh-HcCCCEEEEC
Confidence 3333 4577888876
No 293
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=39.57 E-value=2.4e+02 Score=23.96 Aligned_cols=86 Identities=15% Similarity=0.075 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEeeccccccCh
Q 020985 127 PSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTA 206 (319)
Q Consensus 127 ~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~~~ 206 (319)
+.....+.+.+..+++++++.|++||.. .++..+.+.. .+.+-...-+.+.+++++..+..++.|.-. ..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~l~i~~~------~~la~~~g~~--GvHl~~~~~~~~~~r~~~~~~~~ig~s~h~--~~ 107 (196)
T TIGR00693 38 NTRERLALAEKLQELCRRYGVPFIVNDR------VDLALALGAD--GVHLGQDDLPASEARALLGPDKIIGVSTHN--LE 107 (196)
T ss_pred CHHHHHHHHHHHHHHHHHhCCeEEEECH------HHHHHHcCCC--EEecCcccCCHHHHHHhcCCCCEEEEeCCC--HH
Confidence 3456678889999999999999999973 3556555431 222222223466777777777777776431 12
Q ss_pred hhHHHHhcCCCCCEEEc
Q 020985 207 ENLDVVRGIPIERMMIE 223 (319)
Q Consensus 207 ~~~~~l~~ip~drlLlE 223 (319)
+..+ +.....|-+++.
T Consensus 108 e~~~-a~~~g~dyi~~~ 123 (196)
T TIGR00693 108 ELAE-AEAEGADYIGFG 123 (196)
T ss_pred HHHH-HhHcCCCEEEEC
Confidence 2334 334577888773
No 294
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=39.29 E-value=1.1e+02 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCCcEEEEe
Q 020985 134 YFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 134 vf~~qlelA~~~~~Pv~iH~ 153 (319)
..+..++.|.+.+.||+|-.
T Consensus 30 ~~~avi~AAe~~~sPvIiq~ 49 (285)
T PRK07709 30 WTQAILAAAEEEKSPVILGV 49 (285)
T ss_pred HHHHHHHHHHHHCCCEEEEc
Confidence 35566666777777766655
No 295
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=39.09 E-value=1.8e+02 Score=26.79 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhc
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHMREA------AADFCAIVERN 167 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~ 167 (319)
+.+.+.+....+.|++.++|+++--+.. .+-..++|++.
T Consensus 68 ~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~ 112 (265)
T COG2145 68 AERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEV 112 (265)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhc
Confidence 4567889999999999999999988753 13345666654
No 296
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=38.25 E-value=3.1e+02 Score=24.88 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=17.0
Q ss_pred HHHHhcCCCCCEEEcCCCCC
Q 020985 209 LDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 209 ~~~l~~ip~drlLlETD~P~ 228 (319)
.++++++|++|+++|-..|-
T Consensus 177 ~~i~~~l~~eklifEAp~k~ 196 (237)
T TIGR03849 177 DVLAENVDINKVIFEAPQKN 196 (237)
T ss_pred HHHHhhCChhcEEEECCCHH
Confidence 47889999999999987664
No 297
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=38.13 E-value=3e+02 Score=24.78 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHcCCCEEEE--eCCCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCC
Q 020985 31 DIATVLSRAWSSGVDRIIV--TGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKG 108 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~--~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 108 (319)
+..++++.+.++||+.+=+ +.....+++.+..+.+..++... .++.+... +.++ ..+..
T Consensus 21 ~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~-~~~~r~~~----------~~v~---~a~~~----- 81 (259)
T cd07939 21 EKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARL-IVWCRAVK----------EDIE---AALRC----- 81 (259)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEE-EEeccCCH----------HHHH---HHHhC-----
Confidence 4456788899999987644 33456677777777654444322 12221111 2232 22221
Q ss_pred CEEEEEeecCCCCC--------CCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc----hHHHHHHHH
Q 020985 109 KVVAIGECGLDYDR--------LHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA----AADFCAIVE 165 (319)
Q Consensus 109 ~~~aIGEiGLD~~~--------~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a----~~~~l~il~ 165 (319)
++..|.+-..- .+ .+.+.-.+.+...++.|++.|+.|.+.+.++ .+.+.++++
T Consensus 82 ---g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~ 146 (259)
T cd07939 82 ---GVTAVHISIPVSDIHLAHKLG-KDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAE 146 (259)
T ss_pred ---CcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHH
Confidence 11112211100 00 1122334567788899999999999888654 344554444
No 298
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=37.70 E-value=71 Score=25.26 Aligned_cols=33 Identities=6% Similarity=-0.134 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEeccchHHHH
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHMREAAADFC 161 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l 161 (319)
..+...+-.+++.+.+.+.||.|||....++.-
T Consensus 64 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~ 96 (139)
T cd00127 64 SKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSA 96 (139)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCCCCchhH
Confidence 344445556667677778999999987654443
No 299
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=37.35 E-value=1.8e+02 Score=27.47 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcC-CCcEEEEeccchHHHHHHHHhccCCCcceEEE-eCC-CCHHHHHHHHHCCCeEeeccc----c-c
Q 020985 132 RKYFEKQFELAYAT-KLPMFLHMREAAADFCAIVERNKDRFTGGVTH-SFT-GSAEDRDKLLTFNMYIGINGC----S-L 203 (319)
Q Consensus 132 ~~vf~~qlelA~~~-~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H-~f~-g~~~~~~~~l~~g~y~s~sg~----~-~ 203 (319)
...++++++..++. +.|+++|+......+++.+.+.+.+ +++ .+. .+...+++.+.-. +.+.|. . +
T Consensus 197 ~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~d----vl~~d~~~~dl~eak~~~g~k--~~l~GNlDp~~L~ 270 (321)
T cd03309 197 LPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVD----SWNVVMTANNTAELRRLLGDK--VVLAGAIDDVALD 270 (321)
T ss_pred HHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCC----EEEecCCCCCHHHHHHHhCCC--eEEEcCCChHHhc
Confidence 45557788877776 7899999999887888888887542 333 233 3777777777533 233332 1 2
Q ss_pred c-C--h----hhHHHHhcCCC-CCEEEcCCCCC
Q 020985 204 K-T--A----ENLDVVRGIPI-ERMMIETDSPY 228 (319)
Q Consensus 204 ~-~--~----~~~~~l~~ip~-drlLlETD~P~ 228 (319)
. . . ..+++++.+.. .+.++-++...
T Consensus 271 ~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~ 303 (321)
T cd03309 271 TATWPEEDARGVAKAAAECAPIHPFISAPTAGL 303 (321)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCC
Confidence 2 2 2 23467777654 78888887654
No 300
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=37.24 E-value=81 Score=22.64 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Q 020985 267 LVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299 (319)
Q Consensus 267 ~l~~v~~~iA~~~~is~~e~~~~~~~~N~~rlf 299 (319)
++.++++.||+-.+++ .++|.+...+-...+-
T Consensus 5 ~~~e~i~~iA~~t~~P-~e~V~~my~dt~~~l~ 36 (66)
T PF12085_consen 5 NVDEVIRSIAEETGTP-AETVRRMYDDTMRELS 36 (66)
T ss_pred cHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Confidence 6789999999999999 9999999888877764
No 301
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=37.00 E-value=1.3e+02 Score=24.61 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=35.1
Q ss_pred cEEeeccCCCCccccccccCC---cCCCCCHHHHHHHHHHcCCCEEEEe-CCCHHhHHHHHHH
Q 020985 5 RLIDIAVNFTDGMFKGIYHGK---QCHASDIATVLSRAWSSGVDRIIVT-GGSLEESKEALAI 63 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~---~~h~~~~~~vl~~~~~~Gv~~~v~~-~~~~~~~~~~~~l 63 (319)
+++|+|.|.....|...-... -|-..|+..+|.+.++.||.-+++- +..++-....+++
T Consensus 19 ~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~ 81 (144)
T KOG4549|consen 19 RLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLET 81 (144)
T ss_pred EEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHH
Confidence 789999998765543210000 0112588899999999999755543 2344444444444
No 302
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=36.91 E-value=2.6e+02 Score=28.96 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCCEEEEe--CCCHHhHHHHHHHHHhcCC
Q 020985 32 IATVLSRAWSSGVDRIIVT--GGSLEESKEALAIAETDGR 69 (319)
Q Consensus 32 ~~~vl~~~~~~Gv~~~v~~--~~~~~~~~~~~~l~~~~~~ 69 (319)
++..++.+.+.|++.+=+. -++.+..+..++.+++...
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~ 137 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKK 137 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCC
Confidence 4557888999999854443 2456666777788887764
No 303
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=36.88 E-value=2.5e+02 Score=24.56 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecC--CCCcccccccCCCHHHHHHHHHHHHh-------
Q 020985 33 ATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVH--PTRCKEFEESGDPEKHFQALLSLAKE------- 103 (319)
Q Consensus 33 ~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiH--P~~~~~~~~~~~~~~~l~~l~~~l~~------- 103 (319)
.++++++-++|++-+.. .+..+.......++++|.--+..+-.. |.......+. ..+.++++.+++.+
T Consensus 82 ~~v~~~aL~~g~~~ind-~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~i~~l~~ 158 (210)
T PF00809_consen 82 PEVAEAALKAGADIIND-ISGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADY--RLDIAEEIIEFLEERIEALEK 158 (210)
T ss_dssp HHHHHHHHHHTSSEEEE-TTTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHH--SHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcceEEe-cccccccchhhhhhhcCCCEEEEEecccccccccccchh--hhhHHHHHHHHHHHHHHHHHH
Confidence 46677777778875444 344444677788888886422222222 3333221110 00233444444432
Q ss_pred -ccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEE-Eeccc
Q 020985 104 -GIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFL-HMREA 156 (319)
Q Consensus 104 -~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~i-H~r~a 156 (319)
++...+++. --|+.+. ...+...++++. ++.-+++ +.|+.+ ++|+.
T Consensus 159 ~Gi~~~~Ii~--DPgigf~----~~~~~~~~~l~~-i~~~~~~~~~p~l~~~srk~ 207 (210)
T PF00809_consen 159 AGIPRERIIL--DPGIGFG----KDPEQNLELLRN-IEELKELFGYPILVGGSRKS 207 (210)
T ss_dssp TT--GGGEEE--ETTTTSS----TTHHHHHHHHHT-HHHHHTTSSSEBEEEETTGH
T ss_pred cCCCHHHEee--ccccCcC----CCHHHHHHHHHH-HHHHHHhCCCCEEEEEeCCc
Confidence 232223222 2344431 234455666665 5555555 999766 66653
No 304
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.84 E-value=4.3e+02 Score=26.14 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccchHHHH---HHHHhc----------cC-CCcceEEEeCCCCHHHHHHHHHCCCeEe
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAAADFC---AIVERN----------KD-RFTGGVTHSFTGSAEDRDKLLTFNMYIG 197 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l---~il~~~----------~~-~~~~~i~H~f~g~~~~~~~~l~~g~y~s 197 (319)
+.+|+..-.+|+..++|+.+|.-.-.+++- ++..+. +. .+..++.|+---+.+.++-+-++|+-++
T Consensus 219 k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~l~k~g~svs 298 (439)
T KOG3968|consen 219 KGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIELLAKRGCSVS 298 (439)
T ss_pred chhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHHHHhcCCceE
Confidence 567888889999999999999965433332 222221 11 1124566876667788888888999998
Q ss_pred ecccc---ccC--hhhHHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHH
Q 020985 198 INGCS---LKT--AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVL 272 (319)
Q Consensus 198 ~sg~~---~~~--~~~~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~ 272 (319)
.-+.. +.+ +.++++++. -=.+=++||.--.+ + .+.-..--.+.
T Consensus 299 hCP~Sn~~L~sG~~~vr~lL~~--~v~VgLGtDv~~~s--------------~----------------l~a~r~A~~~s 346 (439)
T KOG3968|consen 299 HCPTSNSILGSGIPRVRELLDI--GVIVGLGTDVSGCS--------------I----------------LNALRQAMPMS 346 (439)
T ss_pred ECCcchhhhccCCccHHHHHhc--CceEeecCCccccc--------------c----------------HHHHHHHHHHH
Confidence 87652 332 345677775 22355778864110 0 00001111233
Q ss_pred HHHHHh---cCCChHHHHHHHHHHHHHHhcCCCC
Q 020985 273 EVVAGC---KGINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 273 ~~iA~~---~~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
..++-. .++| .+++-...+-|..+.+++..
T Consensus 347 ~hL~~~~~~~~Ls-~~e~L~lATi~GA~aLg~d~ 379 (439)
T KOG3968|consen 347 MHLACVLDVMKLS-MEEALYLATIGGAKALGRDD 379 (439)
T ss_pred HHHHhccCcccCC-HHHHHHHHhccchhhccCCC
Confidence 333333 3688 99999999999988887644
No 305
>PRK00957 methionine synthase; Provisional
Probab=36.44 E-value=3.5e+02 Score=24.99 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=48.4
Q ss_pred CCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHH---CCCeEeeccc---cc--cCh-h----hHHH
Q 020985 145 TKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLT---FNMYIGINGC---SL--KTA-E----NLDV 211 (319)
Q Consensus 145 ~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~---~g~y~s~sg~---~~--~~~-~----~~~~ 211 (319)
.+.++.+|+-.....+++.|.+.+. .++.--|.++.+.++.+.+ .|-.+.++-. .. -+. + ++++
T Consensus 189 i~~~v~lH~CG~~~~i~~~l~~~~v---d~i~ld~~~~~~~l~~l~~~~~~~k~l~~GvId~~~~~~e~~e~v~~~i~~~ 265 (305)
T PRK00957 189 LNVPVAMHVCGDVSNIIDDLLKFNV---DILDHEFASNKKNLEILEEKDLIGKKIGFGCVDTKSKSVESVDEIKALIEEG 265 (305)
T ss_pred hCCceEEEECCCcHHHHHHHHhCCC---CEEEEeecCCCCCHHHHhhhccCCCEEEEEEEcCCCCCCCCHHHHHHHHHHH
Confidence 4688999999888888888876643 2333333333333443332 2434443221 11 111 1 2356
Q ss_pred HhcCCCCCEEEcCCCCC
Q 020985 212 VRGIPIERMMIETDSPY 228 (319)
Q Consensus 212 l~~ip~drlLlETD~P~ 228 (319)
++.+|.+|+.+-+||.+
T Consensus 266 ~~~~~~~~l~lsp~CGl 282 (305)
T PRK00957 266 IEILGAENILIDPDCGM 282 (305)
T ss_pred HHhcCHHHEEECCCcCC
Confidence 77789999999999998
No 306
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=36.42 E-value=3.4e+02 Score=24.85 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=46.0
Q ss_pred CCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc-hHHHHH-H----HHhccCCCcceEEEeCCC
Q 020985 108 GKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA-AADFCA-I----VERNKDRFTGGVTHSFTG 181 (319)
Q Consensus 108 ~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a-~~~~l~-i----l~~~~~~~~~~i~H~f~g 181 (319)
+.+.++ .+|+.++. .+.+ .=.+.+++.++.+++.++||++-.-.. ...+.+ + ++..+. ..+.+|.|.|
T Consensus 52 ~~v~~v-K~g~~lf~-~~G~--~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~~~a~a~~~~~g~--D~vTvh~~~G 125 (261)
T TIGR02127 52 EYAAVV-KPQVAFFE-RFGS--EGFKALEEVIAHARSLGLPVLADVKRGDIGSTASAYAKAWLGHLHA--DALTVSPYLG 125 (261)
T ss_pred CcceEE-ecCHHHHH-hcCH--HHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHHHHHHHHHhhcCC--CEEEECCcCC
Confidence 456677 88988763 1121 224568888899999999999887532 333322 2 222222 3567899988
Q ss_pred CHHHHHHHH
Q 020985 182 SAEDRDKLL 190 (319)
Q Consensus 182 ~~~~~~~~l 190 (319)
. +.++.++
T Consensus 126 ~-d~l~~~~ 133 (261)
T TIGR02127 126 L-DSLRPFL 133 (261)
T ss_pred H-HHHHHHH
Confidence 4 3444444
No 307
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=36.38 E-value=3.8e+02 Score=25.42 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccch
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAA 157 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~ 157 (319)
..+....++|.++|.|+++-...+.
T Consensus 147 ~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 147 AIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 4466777899999999998776543
No 308
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=36.32 E-value=4.2e+02 Score=28.26 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcC---CCcEEEEec-cchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHH-CCC--eEeecccccc-
Q 020985 133 KYFEKQFELAYAT---KLPMFLHMR-EAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLT-FNM--YIGINGCSLK- 204 (319)
Q Consensus 133 ~vf~~qlelA~~~---~~Pv~iH~r-~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~-~g~--y~s~sg~~~~- 204 (319)
+.....+..+.+- +..|.+|+- ..+.++++.|.+.+.+ .+-+-...+..+.++.+.+ .++ -++.+.+-.+
T Consensus 615 ~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~vD--~i~lE~~r~~~e~L~~~~~~~~~~~~ig~GVvD~~s 692 (750)
T TIGR01371 615 DWAVEAFRLATSGVKDETQIHTHMCYSEFNEIIESIADLDAD--VISIEASRSDMELLSAFKNGFGYPNGIGPGVYDIHS 692 (750)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEEEECCCcHHHHHHHHhCCCC--EEEEEecCCChhHHHHhhhhcccCCeEEEEEEeCCC
Confidence 3444555554331 355777875 4568888888765432 2222232233455555544 121 1333221111
Q ss_pred ----C-h----hhHHHHhcCCCCCEEEcCCCCCc
Q 020985 205 ----T-A----ENLDVVRGIPIERMMIETDSPYC 229 (319)
Q Consensus 205 ----~-~----~~~~~l~~ip~drlLlETD~P~~ 229 (319)
+ . .+.++++.+|.+|+.+.+||.+.
T Consensus 693 ~~ve~~eei~~~i~~a~~~i~~erl~vsPdCGL~ 726 (750)
T TIGR01371 693 PRVPSVEEMADLIEKALQVLPAERLWVNPDCGLK 726 (750)
T ss_pred CCcCCHHHHHHHHHHHHHhcCcceEEEeCCCCCC
Confidence 1 1 12367777899999999999983
No 309
>PF10543 ORF6N: ORF6N domain; InterPro: IPR018873 This entry represents an N-terminal DNA-binding domain found in a wide range of proteins from bacterial and eukaryotic DNA viruses and there bacterial homologues, they include the poxvirus D6R/N1R and baculoviral Bro protein families. The KilA-N domain is considered to be homologous to the fungal DNA-binding APSES domain. Both the KilA-N and APSES domains share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease []. This entry represents the amino-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018876 from INTERPRO.
Probab=36.10 E-value=41 Score=25.31 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhc-CCCCCCcccch
Q 020985 271 VLEVVAGCKGINDIDQLSRTLYHNTCRVF-FPQDLDSTADA 310 (319)
Q Consensus 271 v~~~iA~~~~is~~e~~~~~~~~N~~rlf-~~~~~~~~~~~ 310 (319)
+.+.||++.|++ ...+.+.+.+|-.||- +..-.+-+.+.
T Consensus 14 t~~~lA~~yg~~-~~~i~~~~~rN~~rF~eg~~~f~L~~~e 53 (88)
T PF10543_consen 14 TDEDLAELYGVE-TKTINRNFKRNKDRFIEGKDYFQLTGEE 53 (88)
T ss_pred EHHHHHHHhCcC-HHHHHHHHHHHHHhCCCCCcEEEecchh
Confidence 367889999999 9999999999999987 55555544443
No 310
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=36.10 E-value=2.8e+02 Score=25.26 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEe-------ccch--HH---HHHHHHhccCCCcceEEEeCCCCHHHHHHHHHC
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHM-------REAA--AD---FCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~-------r~a~--~~---~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~ 192 (319)
..+.+...+..++|.++|+|++++. .... +. ..++..+.+.+ +|==.|.|+.+.++++.+.
T Consensus 122 ~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD---~vKt~~~~~~~~l~~~~~~ 194 (267)
T PRK07226 122 AEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGAD---IVKTNYTGDPESFREVVEG 194 (267)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCC---EEeeCCCCCHHHHHHHHHh
Confidence 4566778888899999999999974 1111 11 12334344432 2222477888888888863
No 311
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.99 E-value=1.9e+02 Score=26.40 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCCHHhH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGSLEES 57 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~~~~~ 57 (319)
+.+...++++.+.|.+.+=+...+|..|
T Consensus 11 g~~~~a~~~~~~~G~~~~qif~~~P~~w 38 (274)
T TIGR00587 11 GGLQAAYNRAAEIGATAFMFFLKSPRWW 38 (274)
T ss_pred CCHHHHHHHHHHhCCCEEEEEecCcccc
Confidence 5678889999999999877776555533
No 312
>PLN02461 Probable pyruvate kinase
Probab=35.79 E-value=4.5e+02 Score=26.68 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
|.+++++-+.+.|++.+.+--+ +.+|...+.++.... |-|+.-+.... ..+.++.|.+.++. .++-
T Consensus 195 D~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~-------~~~~~IiAKIE----~~~av~nl~eIi~~--sDgI 261 (511)
T PLN02461 195 DKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEH-------AKSILLISKVE----NQEGLDNFDDILAE--SDAF 261 (511)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhC-------CCCCCEEEEEC----CHHHHHHHHHHHHh--cCEE
Confidence 5555445556789986544222 567777777766532 22433333221 11566777777764 3555
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
.+|=|-.|+.... . .-...|+++ ++.|.+.++||++=|
T Consensus 262 MVARGDLGvEip~-e-~vp~~Qk~I----I~~c~~~gkPVIvAT 299 (511)
T PLN02461 262 MVARGDLGMEIPI-E-KIFLAQKMM----IYKCNLAGKPVVTAT 299 (511)
T ss_pred EEeccccccccCH-H-HhHHHHHHH----HHHHHHcCCCeEEee
Confidence 7888999988531 1 123456655 789999999999866
No 313
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=35.64 E-value=3e+02 Score=25.41 Aligned_cols=36 Identities=8% Similarity=0.184 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEEecc-chHHHHHH
Q 020985 127 PSEIQRKYFEKQFELAYATKLPMFLHMRE-AAADFCAI 163 (319)
Q Consensus 127 ~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~-a~~~~l~i 163 (319)
+.+.++++++...+.+.. ++||+.|+.. ...+++++
T Consensus 52 t~eEr~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~l 88 (290)
T TIGR00683 52 STEEKKEIFRIAKDEAKD-QIALIAQVGSVNLKEAVEL 88 (290)
T ss_pred CHHHHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHH
Confidence 456667777777776643 5788888752 34444443
No 314
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=35.37 E-value=2.6e+02 Score=23.17 Aligned_cols=70 Identities=20% Similarity=0.141 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEecc-chHHHHHHHHhcc
Q 020985 93 HFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMRE-AAADFCAIVERNK 168 (319)
Q Consensus 93 ~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~-a~~~~l~il~~~~ 168 (319)
.++.+.++++++ ....+. +||++.-.. ......+.+-...=.+.+++++||.++-.+ ......+.|.+.+
T Consensus 41 ~~~~l~~li~~~--~~~~vV---VGlP~~m~g-~~~~~~~~~~~f~~~L~~r~~lpv~l~DERltTv~A~~~L~~~~ 111 (141)
T COG0816 41 DFNALLKLVKEY--QVDTVV---VGLPLNMDG-TEGPRAELARKFAERLKKRFNLPVVLWDERLSTVEAERMLIEAG 111 (141)
T ss_pred hHHHHHHHHHHh--CCCEEE---EecCcCCCC-CcchhHHHHHHHHHHHHHhcCCCEEEEcCccCHHHHHHHHHHcC
Confidence 567788888763 333444 588874322 212233334334445667789999999864 4555556666543
No 315
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=35.28 E-value=1.3e+02 Score=27.83 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCC-CcceEEEeCCC-CHHHHHHHHHCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDR-FTGGVTHSFTG-SAEDRDKLLTFN 193 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~-~~~~i~H~f~g-~~~~~~~~l~~g 193 (319)
+..+..++.|.+.+.||+|-.-.. .+.+..+++..... ...+.+|-=-| +.+.+.+.++.|
T Consensus 24 e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~G 92 (276)
T cd00947 24 ETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAG 92 (276)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC
Confidence 345666777777777777655322 12233333322111 12345543222 466677777766
No 316
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=35.04 E-value=1.4e+02 Score=28.62 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCCC--cceEEEeCCC-CHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDRF--TGGVTHSFTG-SAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~~--~~~i~H~f~g-~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-+-.. .+.+..+++...... ..+++|-=-| +.+.+++.++.||
T Consensus 29 e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GF 99 (347)
T PRK13399 29 EQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGF 99 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCC
Confidence 447788899999999999877432 122333333221111 2456664333 6788899998884
No 317
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=35.04 E-value=2.7e+02 Score=23.21 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHcCCCEEEEeC
Q 020985 30 SDIATVLSRAWSSGVDRIIVTG 51 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~ 51 (319)
.....+++.+.+.|++.+++.+
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH
Confidence 3567788898999999877765
No 318
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=34.88 E-value=60 Score=27.08 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHHHHHhcCCCCCCc
Q 020985 270 QVLEVVAGCKGI--NDIDQLSRTLYHNTCRVFFPQDLDS 306 (319)
Q Consensus 270 ~v~~~iA~~~~i--s~~e~~~~~~~~N~~rlf~~~~~~~ 306 (319)
+-+..+|++.|+ .+...+...+.+||.++|.-..+.+
T Consensus 84 E~L~ala~llgv~~~d~~~f~~~~q~nF~~if~s~~~t~ 122 (144)
T PF11220_consen 84 EHLDALAELLGVPAEDRAAFGAVLQENFASIFPSESVTS 122 (144)
T ss_pred chHHHHHHHhCCCHhhHHHHHHHHHHHHHHhcccCCCCH
Confidence 346788899999 3577899999999999998776643
No 319
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=34.85 E-value=1.3e+02 Score=28.00 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCC-CcceEEEeCCC-CHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDR-FTGGVTHSFTG-SAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~-~~~~i~H~f~g-~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-.-.. ...+..+++..... ...+++|-=.| +.+.+++.++.||
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~Gf 98 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCC
Confidence 346667788888888888766321 12222222222111 12455653333 6777888888774
No 320
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=34.82 E-value=64 Score=24.59 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=39.8
Q ss_pred EEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhcc
Q 020985 113 IGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNK 168 (319)
Q Consensus 113 IGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~ 168 (319)
-||++.-|.-..+-.+-.-..+...+.+...+.|.|+-.|+.+.-+...+++++.+
T Consensus 19 tge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg 74 (89)
T PF08444_consen 19 TGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLG 74 (89)
T ss_pred cccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCC
Confidence 46777665321111122345677788888899999999999988888888888765
No 321
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=34.43 E-value=66 Score=27.75 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcc--eEEEeCCCCHHHHHHHHHCCCeEeecc
Q 020985 126 CPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTG--GVTHSFTGSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 126 ~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~--~i~H~f~g~~~~~~~~l~~g~y~s~sg 200 (319)
-|...-.+.++.+.++|+++++||+.-. -..++-++.++.....+.+ -...||.--.+.+.+..+.+-|-.|+.
T Consensus 35 hP~~Ey~~R~~~~~~~~~~~~i~~i~~~-Y~~~~w~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 35 HPYEEYERRLEELKRFAEKLGIPLIEGD-YDPEEWLRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEecC-CCHHHHHHHHhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 3556667889999999999999999977 4466666666654432222 256777655555544444433333443
No 322
>PRK08185 hypothetical protein; Provisional
Probab=34.32 E-value=3.9e+02 Score=24.86 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCC
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGS 53 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~ 53 (319)
.+++. ++++-+.|++.+++=+..
T Consensus 79 ~~~e~-i~~ai~~Gf~SVM~D~S~ 101 (283)
T PRK08185 79 ATIED-VMRAIRCGFTSVMIDGSL 101 (283)
T ss_pred CCHHH-HHHHHHcCCCEEEEeCCC
Confidence 46655 556677899887776554
No 323
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=34.31 E-value=3.1e+02 Score=25.73 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHc-C--CCcEEEEeccch---H---HHHHHHHhccCCCcceEEEe------CCC---CHHHHHHHHHC-
Q 020985 132 RKYFEKQFELAYA-T--KLPMFLHMREAA---A---DFCAIVERNKDRFTGGVTHS------FTG---SAEDRDKLLTF- 192 (319)
Q Consensus 132 ~~vf~~qlelA~~-~--~~Pv~iH~r~a~---~---~~l~il~~~~~~~~~~i~H~------f~g---~~~~~~~~l~~- 192 (319)
.+...+.++..++ . ++||.+-+|-.. + ++.+++.+.+. ..+.+|+ |+| +++.++++.+.
T Consensus 116 ~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gv--d~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~ 193 (312)
T PRK10550 116 PELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGA--TELVVHGRTKEDGYRAEHINWQAIGEIRQRL 193 (312)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCC--CEEEECCCCCccCCCCCcccHHHHHHHHhhc
Confidence 3445555555444 3 589999987432 2 34455655553 2556776 455 35666666653
Q ss_pred CCeEeeccccccChhhHHHHhcCCCCCEEEcCCC
Q 020985 193 NMYIGINGCSLKTAENLDVVRGIPIERMMIETDS 226 (319)
Q Consensus 193 g~y~s~sg~~~~~~~~~~~l~~ip~drlLlETD~ 226 (319)
++-+-.+|.+....+..++++.-..|-+++..-.
T Consensus 194 ~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~ 227 (312)
T PRK10550 194 TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGA 227 (312)
T ss_pred CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHh
Confidence 5556666665555556788887788889988764
No 324
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=33.74 E-value=3.8e+02 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHH
Q 020985 128 SEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAI 163 (319)
Q Consensus 128 ~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~i 163 (319)
.+..+++++...+.++. ++||+.|+.....+.+++
T Consensus 57 ~eEr~~v~~~~~~~~~g-~~pvi~gv~~~t~~ai~~ 91 (296)
T TIGR03249 57 PAEYEQVVEIAVSTAKG-KVPVYTGVGGNTSDAIEI 91 (296)
T ss_pred HHHHHHHHHHHHHHhCC-CCcEEEecCccHHHHHHH
Confidence 45555666666555432 566666665444444433
No 325
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=33.63 E-value=2.1e+02 Score=26.77 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=58.0
Q ss_pred HHHHHHHHHHH-cCCCcEEEEeccc----h---HHHHHHHHhccCCCcceEEEeCC------C--CHHHHHHHHHC-CCe
Q 020985 133 KYFEKQFELAY-ATKLPMFLHMREA----A---ADFCAIVERNKDRFTGGVTHSFT------G--SAEDRDKLLTF-NMY 195 (319)
Q Consensus 133 ~vf~~qlelA~-~~~~Pv~iH~r~a----~---~~~l~il~~~~~~~~~~i~H~f~------g--~~~~~~~~l~~-g~y 195 (319)
+.....++..+ ..++||++=+|-. . .+++.++.+.+. ..+.+|+-+ | +++.+.++.+. ++-
T Consensus 108 ~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~--~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ip 185 (309)
T PF01207_consen 108 DLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGV--SAITVHGRTRKQRYKGPADWEAIAEIKEALPIP 185 (309)
T ss_dssp HHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHHC-TSE
T ss_pred HHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhccc--ceEEEecCchhhcCCcccchHHHHHHhhcccce
Confidence 34555555555 4789999999843 2 344555666653 366789843 2 47777777764 777
Q ss_pred EeeccccccChhhHHHHhcCCCCCEEEcCCC
Q 020985 196 IGINGCSLKTAENLDVVRGIPIERMMIETDS 226 (319)
Q Consensus 196 ~s~sg~~~~~~~~~~~l~~ip~drlLlETD~ 226 (319)
+-.+|.+....+..+.++..+.|.+|+..-+
T Consensus 186 vi~NGdI~s~~d~~~~~~~tg~dgvMigRga 216 (309)
T PF01207_consen 186 VIANGDIFSPEDAERMLEQTGADGVMIGRGA 216 (309)
T ss_dssp EEEESS--SHHHHHHHCCCH-SSEEEESHHH
T ss_pred eEEcCccCCHHHHHHHHHhcCCcEEEEchhh
Confidence 7778877666667788888789999998754
No 326
>PRK09230 cytosine deaminase; Provisional
Probab=33.61 E-value=3.9e+02 Score=26.07 Aligned_cols=62 Identities=8% Similarity=0.001 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCC---cEEEEeccc-------hHHHHHHHHhccCCCcceEEEeCCCCHHH---------------HHHH
Q 020985 135 FEKQFELAYATKL---PMFLHMREA-------AADFCAIVERNKDRFTGGVTHSFTGSAED---------------RDKL 189 (319)
Q Consensus 135 f~~qlelA~~~~~---Pv~iH~r~a-------~~~~l~il~~~~~~~~~~i~H~f~g~~~~---------------~~~~ 189 (319)
.+..+++..++++ -+..||... ..+.+++|++.+ ..|.||-+.+... +.++
T Consensus 226 ~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~g----v~vv~cP~sn~~l~~~~~~~p~~~g~~pi~~l 301 (426)
T PRK09230 226 VETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSG----INFVANPLVNIHLQGRFDTYPKRRGITRVKEM 301 (426)
T ss_pred HHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcC----CeEEECcchhhhhcCCCCCCCCCCCCcCHHHH
Confidence 3345666666664 477899866 467888888764 3477875543322 7899
Q ss_pred HHCCCeEeecc
Q 020985 190 LTFNMYIGING 200 (319)
Q Consensus 190 l~~g~y~s~sg 200 (319)
++.|+-++++.
T Consensus 302 ~~aGv~V~lGT 312 (426)
T PRK09230 302 LEAGINVCFGH 312 (426)
T ss_pred HHCCCeEEEec
Confidence 99999888864
No 327
>PRK00035 hemH ferrochelatase; Reviewed
Probab=33.50 E-value=4.1e+02 Score=24.91 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCCH--------HhHHHHHHHHHhcC---Ce--EEeeecCCCCcc
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGSL--------EESKEALAIAETDG---RL--FCTVGVHPTRCK 82 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~~--------~~~~~~~~l~~~~~---~i--~~~~GiHP~~~~ 82 (319)
+.+++.++++.+.|++.++++...| ...+.+.+..++++ .+ ...+|.||.++.
T Consensus 105 P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~~~~i~~i~~~~~~p~~i~ 170 (333)
T PRK00035 105 PSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRLQPEIRFIRSYYDHPGYIE 170 (333)
T ss_pred CCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCCCCcEEEeCCccCCHHHHH
Confidence 6789999999999999999987654 23444545555554 22 345555665543
No 328
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=33.46 E-value=2.6e+02 Score=29.81 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcC---CCcEEEEec-cchHHHHHHHHhccCCCcceEEEeCC-CCHHHHHHHHHCC--CeEeeccccc
Q 020985 131 QRKYFEKQFELAYAT---KLPMFLHMR-EAAADFCAIVERNKDRFTGGVTHSFT-GSAEDRDKLLTFN--MYIGINGCSL 203 (319)
Q Consensus 131 Q~~vf~~qlelA~~~---~~Pv~iH~r-~a~~~~l~il~~~~~~~~~~i~H~f~-g~~~~~~~~l~~g--~y~s~sg~~~ 203 (319)
-.+.....+++|.+- +..|.+|.- ..+.++++.|.+... -++.-=++ ...+.++.+-+.+ --++++..-.
T Consensus 619 ~l~~~v~a~n~a~~~~~~~~~i~tH~C~g~~~~i~~~i~~l~v---D~~~lE~~rs~~e~L~~~~~~~~~~~iglGVvd~ 695 (758)
T PRK05222 619 YLDWAVEAFRLATSGVKDETQIHTHMCYSEFNDIIDAIAALDA---DVISIETSRSDMELLDAFEDFGYPNEIGPGVYDI 695 (758)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEeccChHHHHHHHHhCCC---CEEEEEecCCCchhHHHhhccCCCCeEEEEEEcC
Confidence 345555666677662 345677775 458888888876543 22222232 1245555554432 1233322111
Q ss_pred c-----C-h----hhHHHHhcCCCCCEEEcCCCCC
Q 020985 204 K-----T-A----ENLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 204 ~-----~-~----~~~~~l~~ip~drlLlETD~P~ 228 (319)
+ + . .++++++.+|.+||.+.+||.+
T Consensus 696 ~s~~ves~eei~~rI~~a~~~v~~e~l~v~PdCGl 730 (758)
T PRK05222 696 HSPRVPSVEEIEELLRKALEVIPAERLWVNPDCGL 730 (758)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCChheEEEeCCCCC
Confidence 1 1 1 2347888999999999999998
No 329
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=33.22 E-value=4.7e+02 Score=25.53 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=34.2
Q ss_pred EEEEeccchHHHHHHHHhccCCCcceEEEeCCCC------HHHHHHHHHCCCeEeecc
Q 020985 149 MFLHMREAAADFCAIVERNKDRFTGGVTHSFTGS------AEDRDKLLTFNMYIGING 200 (319)
Q Consensus 149 v~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~------~~~~~~~l~~g~y~s~sg 200 (319)
+..|+....++-++++++.+ ..+.||-..+ ..-++++++.|+-++++.
T Consensus 250 ~~~H~~~l~~~d~~~la~~g----~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGt 303 (435)
T PRK15493 250 VIAHGVVLNDNERAFLAEHD----VRVAHNPNSNLKLGSGIANVKAMLEAGIKVGIAT 303 (435)
T ss_pred EEEEeecCCHHHHHHHHHcC----CeEEEChHHHHHHhcCcccHHHHHHCCCeEEEcc
Confidence 78999988888889998865 2477874322 222477888898888764
No 330
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=33.22 E-value=4.2e+02 Score=25.00 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=64.0
Q ss_pred CEEEEEeecCCCCCC------CCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccch----HHHHHHHHhccCCCcceEEEe
Q 020985 109 KVVAIGECGLDYDRL------HFCPSEIQRKYFEKQFELAYATKLPMFLHMREAA----ADFCAIVERNKDRFTGGVTHS 178 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~------~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~----~~~l~il~~~~~~~~~~i~H~ 178 (319)
..+-+|-|=-+.+.. ..-+++.-+++.++|.+++.++|.|.++|..... .+.++.+.+... ..+++=+
T Consensus 26 ptvL~gsiFY~~h~iV~D~~~G~FDk~~Ae~Li~~~~elsd~tg~p~~~~v~~~~~eam~k~I~~v~~~~d--~Pl~IDS 103 (308)
T PRK00979 26 PTVLIGSIFYAGHKIVSDEKKGIFDKEKAEALINRQEELSDKTGNPALLDVVGESPEAMEKYIDFVSEITD--LPFLIDS 103 (308)
T ss_pred CceEEEEeeecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHhcCC--CCEEEeC
Confidence 355666665444321 1224677889999999999999999999998653 444555555432 2445555
Q ss_pred CCCCHHHHHHHHH---------CCCeEeeccccccChhhHHHHhcCCCC
Q 020985 179 FTGSAEDRDKLLT---------FNMYIGINGCSLKTAENLDVVRGIPIE 218 (319)
Q Consensus 179 f~g~~~~~~~~l~---------~g~y~s~sg~~~~~~~~~~~l~~ip~d 218 (319)
- +++.....++ +-+|=|+++..-+ +..+++++....
T Consensus 104 t--~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~--eel~llk~yg~a 148 (308)
T PRK00979 104 T--SPEARIAAAKYATELGLADRAIYNSINPSIEE--EEIEALKESDIK 148 (308)
T ss_pred C--CHHHHHHHHHHhhhcCCCCceEEEeccCCCCH--HHHHHHHHhCCc
Confidence 3 3444443333 2367788765222 335777777755
No 331
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=32.21 E-value=5.9e+02 Score=26.39 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCC----------CHHhHHHHHHHHHhcCC
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGG----------SLEESKEALAIAETDGR 69 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~----------~~~~~~~~~~l~~~~~~ 69 (319)
.+...++..+.++|+..+=+.+. .-+.|+++..+.+..|+
T Consensus 26 ~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pn 75 (596)
T PRK14042 26 EDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPN 75 (596)
T ss_pred HHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCC
Confidence 45667788888899876655532 23468888888777775
No 332
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=32.16 E-value=4.3e+02 Score=24.81 Aligned_cols=172 Identities=14% Similarity=0.055 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCCH--------HhHHHHHHHHHhcC---C--eEEeeecCCCCcccccccCCCHHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGSL--------EESKEALAIAETDG---R--LFCTVGVHPTRCKEFEESGDPEKHFQA 96 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~~--------~~~~~~~~l~~~~~---~--i~~~~GiHP~~~~~~~~~~~~~~~l~~ 96 (319)
+.++++++++++.|+++++++...| .-++.+.+..++.. . ++..+.-||.++. .+.+.
T Consensus 100 P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~---------a~~~~ 170 (316)
T PF00762_consen 100 PSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIE---------ALAER 170 (316)
T ss_dssp SBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHH---------HHHHH
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHH---------HHHHH
Confidence 5789999999999999999986433 23344444444432 1 2344444555443 23445
Q ss_pred HHHHHHhcc-CCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCc---EEEEeccc--------hHHHHHHH
Q 020985 97 LLSLAKEGI-EKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLP---MFLHMREA--------AADFCAIV 164 (319)
Q Consensus 97 l~~~l~~~~-~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~P---v~iH~r~a--------~~~~l~il 164 (319)
+.+.+.+.- .++..+-.--=|+...........-+.++.+..-.+|+.++.+ +...++-. .+++++-|
T Consensus 171 i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l 250 (316)
T PF00762_consen 171 IREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEEL 250 (316)
T ss_dssp HHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHH
Confidence 555554310 0112333445566642221111123444555555666677765 33444422 45666666
Q ss_pred HhccCCCcceEEEe--CC-CCHHHH--------HHHHHCCC-eEeeccccccChhhHHHH
Q 020985 165 ERNKDRFTGGVTHS--FT-GSAEDR--------DKLLTFNM-YIGINGCSLKTAENLDVV 212 (319)
Q Consensus 165 ~~~~~~~~~~i~H~--f~-g~~~~~--------~~~l~~g~-y~s~sg~~~~~~~~~~~l 212 (319)
++.+. .++++=+ |. ...|++ +.+.+.|. .+..-++.-.++...+++
T Consensus 251 ~~~G~--~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~~~~fi~~L 308 (316)
T PF00762_consen 251 AKEGV--KRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLNDSPEFIEAL 308 (316)
T ss_dssp HHCT---SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT-HHHHHHH
T ss_pred HhcCC--CeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCCCHHHHHHH
Confidence 66553 2444433 32 334443 33444576 554444433344444433
No 333
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=31.93 E-value=1.7e+02 Score=27.93 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEecc-ch---------------------HHHHHHHHhccCC-CcceEEEeCCC---CHHHH
Q 020985 133 KYFEKQFELAYATKLPMFLHMRE-AA---------------------ADFCAIVERNKDR-FTGGVTHSFTG---SAEDR 186 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~-a~---------------------~~~l~il~~~~~~-~~~~i~H~f~g---~~~~~ 186 (319)
+..+..++.|.+.+.||+|-.-. .. ..+..+++..... ...+++|-=-| +.+.+
T Consensus 24 e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~~~~e~i 103 (340)
T cd00453 24 DSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWI 103 (340)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCCCCHHHH
Confidence 34667788888888888876643 11 1222333322111 12455653333 57888
Q ss_pred HHHHHCC-CeEee
Q 020985 187 DKLLTFN-MYIGI 198 (319)
Q Consensus 187 ~~~l~~g-~y~s~ 198 (319)
+++++.| +|++.
T Consensus 104 ~~ai~~G~~~~~~ 116 (340)
T cd00453 104 DGLLDAGEKHFAA 116 (340)
T ss_pred HHHHHcCCccccc
Confidence 8888888 55543
No 334
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.87 E-value=3.8e+02 Score=24.01 Aligned_cols=48 Identities=31% Similarity=0.313 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPT 79 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~ 79 (319)
..+.+++++.++|++.++++-..+++....++.++++. +.+.+-+-|.
T Consensus 92 G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g-~~~i~~i~P~ 139 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYG-LDLIFLVAPT 139 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcC-CcEEEEeCCC
Confidence 46888999999999988887666777777787777764 3334444454
No 335
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=31.78 E-value=1.2e+02 Score=18.50 Aligned_cols=32 Identities=19% Similarity=0.098 Sum_probs=25.9
Q ss_pred ccchHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 020985 264 EPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC 296 (319)
Q Consensus 264 ~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~ 296 (319)
.|..+...++.+|+-.|+| ..++.+..-+++.
T Consensus 6 l~~~~~~~l~~~a~~~g~s-~s~~ir~ai~~~l 37 (39)
T PF01402_consen 6 LPDELYERLDELAKELGRS-RSELIREAIREYL 37 (39)
T ss_dssp EEHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 3557888899999999999 9988887776654
No 336
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=31.63 E-value=58 Score=26.44 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEeccch
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHMREAA 157 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~ 157 (319)
+.+...|.++++ +...||.+||+...
T Consensus 72 ~~~v~~f~~~~~---~~~~pvL~HC~sG~ 97 (135)
T TIGR01244 72 PDDVETFRAAIG---AAEGPVLAYCRSGT 97 (135)
T ss_pred HHHHHHHHHHHH---hCCCCEEEEcCCCh
Confidence 456677877776 45799999998654
No 337
>PF10094 DUF2332: Uncharacterized protein conserved in bacteria (DUF2332); InterPro: IPR011200 This is a family of uncharacterised bacterial proteins.
Probab=31.38 E-value=1.4e+02 Score=28.71 Aligned_cols=68 Identities=16% Similarity=0.053 Sum_probs=49.6
Q ss_pred EEEEEeecCCCCCCCC--------------CCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceE
Q 020985 110 VVAIGECGLDYDRLHF--------------CPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGV 175 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~--------------~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i 175 (319)
.-.+.-+|+|..+++- .......+.|+..+.+|++. |..+.-.++.+.+-+++...+.....+|
T Consensus 188 p~V~~R~G~Dl~PlD~~d~~d~~wL~A~VWPdq~~R~~rl~aAla~a~~~--p~~l~~gDa~d~L~~~la~~p~~~~~vV 265 (343)
T PF10094_consen 188 PEVVSRAGCDLNPLDPTDPEDRLWLRAYVWPDQPERLARLRAALAVARQD--PPRLVRGDAVDWLPARLAPAPPGATVVV 265 (343)
T ss_pred CceEEEEecCCCCCCCCCHhHHHHHHHccCCCCHHHHHHHHHHHHHHHhc--CCceecCCHHHHHHHHhhcCCCCCeEEE
Confidence 3456678999887542 22345678899999999884 6778888888888888866655445778
Q ss_pred EEeC
Q 020985 176 THSF 179 (319)
Q Consensus 176 ~H~f 179 (319)
+|..
T Consensus 266 ~hT~ 269 (343)
T PF10094_consen 266 FHTI 269 (343)
T ss_pred EeHH
Confidence 8974
No 338
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=30.87 E-value=4e+02 Score=23.96 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccch-----HHHHHHHHhccCCCcceEEEeCC-C----CHHHHHHHHHC-C-CeEeec
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREAA-----ADFCAIVERNKDRFTGGVTHSFT-G----SAEDRDKLLTF-N-MYIGIN 199 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a~-----~~~l~il~~~~~~~~~~i~H~f~-g----~~~~~~~~l~~-g-~y~s~s 199 (319)
.+.+...++..++.++||++=.|-.. .++.+.+.+.+.. .+.+|.+. | +++.++++.+. + +.+--+
T Consensus 120 p~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad--~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgN 197 (231)
T TIGR00736 120 KELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFD--GIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGN 197 (231)
T ss_pred HHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCC--EEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEE
Confidence 45677778888888999999998432 2445556666542 55678654 3 36777777664 3 544444
Q ss_pred cccccChhhHHHHhcCCCCCEEEcC
Q 020985 200 GCSLKTAENLDVVRGIPIERMMIET 224 (319)
Q Consensus 200 g~~~~~~~~~~~l~~ip~drlLlET 224 (319)
|-++...+.++.+. .+.|-+++.+
T Consensus 198 GgI~s~eda~e~l~-~GAd~VmvgR 221 (231)
T TIGR00736 198 NSIDDIESAKEMLK-AGADFVSVAR 221 (231)
T ss_pred CCcCCHHHHHHHHH-hCCCeEEEcH
Confidence 54555556778887 5888888887
No 339
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=30.83 E-value=96 Score=33.26 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCC-HHhHHHHHHHHHhcC-CeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGS-LEESKEALAIAETDG-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKG 108 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~-~~~~~~~~~l~~~~~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 108 (319)
+++++++-+++.|++. |-+|.. ++++. ++++++. .=+.++|-+|.....+-+ +.-. .
T Consensus 68 ~IdeII~iAk~~gaDa-IhPGYGfLSEn~---efA~~c~eaGI~FIGP~~e~ld~~Gd-----Kv~A--r---------- 126 (1149)
T COG1038 68 SIDEIIRIAKRSGADA-IHPGYGFLSENP---EFARACAEAGITFIGPKPEVLDMLGD-----KVKA--R---------- 126 (1149)
T ss_pred cHHHHHHHHHHcCCCe-ecCCcccccCCH---HHHHHHHHcCCEEeCCCHHHHHHhcc-----HHHH--H----------
Confidence 6777888888888773 455532 22222 2222221 124567777654433211 1111 1
Q ss_pred CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEec
Q 020985 109 KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
..|+ ++|+.--+-...+.+ -.+..+++|++++-||+|-..
T Consensus 127 -~~A~-~agvPvipgt~~~~~----~~ee~~~fa~~~gyPvmiKA~ 166 (1149)
T COG1038 127 -NAAI-KAGVPVIPGTDGPIE----TIEEALEFAEEYGYPVMIKAA 166 (1149)
T ss_pred -HHHH-HcCCCccCCCCCCcc----cHHHHHHHHHhcCCcEEEEEc
Confidence 1133 556664331112222 255668999999999999873
No 340
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.79 E-value=4e+02 Score=23.96 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEE
Q 020985 129 EIQRKYFEKQFELAYATKLPMFL 151 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~i 151 (319)
+...+.+++.+++|+++|.|++.
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~ 117 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQ 117 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEE
Confidence 34567899999999999999774
No 341
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=30.52 E-value=3.7e+02 Score=23.56 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCC--CCHHHHHHHHHCCCeEeeccccccChh
Q 020985 130 IQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFT--GSAEDRDKLLTFNMYIGINGCSLKTAE 207 (319)
Q Consensus 130 ~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~--g~~~~~~~~l~~g~y~s~sg~~~~~~~ 207 (319)
.-.+..++..+++++++.|++||.+ .++..+.+.+ =+|.-. .+...+++++..+..+|.|.- +..
T Consensus 47 ~~~~la~~l~~~~~~~~~~liInd~------~~lA~~~~ad----GVHlg~~d~~~~~~r~~~~~~~~iG~S~H---~~~ 113 (211)
T PRK03512 47 EVEADVVAAIALGRRYQARLFINDY------WRLAIKHQAY----GVHLGQEDLETADLNAIRAAGLRLGVSTH---DDM 113 (211)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeCH------HHHHHHcCCC----EEEcChHhCCHHHHHHhcCCCCEEEEeCC---CHH
Confidence 3346677788999999999999975 3445444321 234311 122445555555667777642 221
Q ss_pred hHHHHhcCCCCCEEEcCCC
Q 020985 208 NLDVVRGIPIERMMIETDS 226 (319)
Q Consensus 208 ~~~~l~~ip~drlLlETD~ 226 (319)
-...+...+.|.+.++.=+
T Consensus 114 e~~~A~~~gaDYi~lgpvf 132 (211)
T PRK03512 114 EIDVALAARPSYIALGHVF 132 (211)
T ss_pred HHHHHhhcCCCEEEECCcc
Confidence 1122224566777776533
No 342
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=30.34 E-value=2.1e+02 Score=26.83 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCCcEEEEe
Q 020985 135 FEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 135 f~~qlelA~~~~~Pv~iH~ 153 (319)
++..-++++++|+++++|.
T Consensus 93 ~~~~g~~~~~~~irls~Hp 111 (303)
T PRK02308 93 LREIGEFIKEHNIRLSFHP 111 (303)
T ss_pred HHHHHHHHHHcCCCeeccC
Confidence 4555556666666666664
No 343
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=30.26 E-value=62 Score=28.21 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=28.7
Q ss_pred ccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 020985 264 EPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCR 297 (319)
Q Consensus 264 ~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~r 297 (319)
.|..-..=+..||+.+|++ ++++.+++.+|+.+
T Consensus 133 S~~aA~~Qv~RVA~argl~-~~~v~~li~~~t~~ 165 (188)
T PF02669_consen 133 SPAAALIQVPRVAKARGLS-EEEVEALIDKHTEG 165 (188)
T ss_pred CHHHHHHHHHHHHHHhCcC-HHHHHHHHHHHhcC
Confidence 4566777788999999999 99999999999876
No 344
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=30.17 E-value=46 Score=34.73 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcC--CeEEeeecCCCCcccc---ccc-----CCCHHHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCC
Q 020985 57 SKEALAIAETDG--RLFCTVGVHPTRCKEF---EES-----GDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFC 126 (319)
Q Consensus 57 ~~~~~~l~~~~~--~i~~~~GiHP~~~~~~---~~~-----~~~~~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~ 126 (319)
...++++++++. .+.++.|+--...+-. .+. +...+.++.+-+-.. .+.+|| |.|..-.+-...
T Consensus 95 ideii~iak~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~-----AR~~Ai-~agVpvVPGTpg 168 (1176)
T KOG0369|consen 95 IDEIISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVA-----ARAIAI-EAGVPVVPGTPG 168 (1176)
T ss_pred HHHHHHHHHHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHH-----HHHHHH-HcCCCccCCCCC
Confidence 355677777764 2445555543322110 000 112345555444332 134556 777765431122
Q ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 127 PSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 127 ~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
+. .-.++.++.+++||+||+|-.
T Consensus 169 Pi----tt~~EA~eF~k~yG~PvI~KA 191 (1176)
T KOG0369|consen 169 PI----TTVEEALEFVKEYGLPVIIKA 191 (1176)
T ss_pred Cc----ccHHHHHHHHHhcCCcEEEee
Confidence 22 335667899999999999987
No 345
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=29.98 E-value=1.8e+02 Score=27.56 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEe
Q 020985 133 KYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~ 153 (319)
+..+..++.|.+.+.||+|-.
T Consensus 35 e~~~avi~AAee~~sPvIlq~ 55 (321)
T PRK07084 35 EQLQAIIQACVETKSPVILQV 55 (321)
T ss_pred HHHHHHHHHHHHhCCCEEEEe
Confidence 345666777777777777655
No 346
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=29.91 E-value=2.1e+02 Score=26.02 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEeccch------HHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCC
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHMREAA------ADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFN 193 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~------~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g 193 (319)
+.|.+.+....+.|.++++|+++--+... +-..++|+++.+ -|+-+ +..++..+....
T Consensus 62 ~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~----~vIrG---N~sEI~aLag~~ 125 (246)
T PF02110_consen 62 DERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKP----TVIRG---NASEIAALAGED 125 (246)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS------SEEEE---EHHHHHHHHTCC
T ss_pred HhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCC----cEEEe---CHHHHHHHhCcC
Confidence 57889999999999999999999998652 345567766542 14444 677777777653
No 347
>PTZ00300 pyruvate kinase; Provisional
Probab=29.77 E-value=5.2e+02 Score=25.83 Aligned_cols=103 Identities=21% Similarity=0.154 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
|... ++.+-+.|++.+.+.-+ +.+|.+.+.++.... |-++.-+.... ..+.++.|++.+.. .+.-
T Consensus 149 D~~d-I~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~-------~~~~~IiaKIE----t~eav~nldeI~~~--~DgI 214 (454)
T PTZ00300 149 DCAD-LQFGVEQGVDMIFASFIRSAEQVGEVRKALGAK-------GGDIMIICKIE----NHQGVQNIDSIIEE--SDGI 214 (454)
T ss_pred hHHH-HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhc-------CCCceEEEEEC----CHHHHHhHHHHHHh--CCEE
Confidence 4444 57778899998765433 678888877777542 22222222110 11566777777643 2334
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
.+|=|-.|+.... ..-...| ++.++.|++.++|+++=|
T Consensus 215 mVaRGDLgvei~~--e~vp~~Q----k~Ii~~~~~~gkpvI~AT 252 (454)
T PTZ00300 215 MVARGDLGVEIPA--EKVVVAQ----KILISKCNVAGKPVICAT 252 (454)
T ss_pred EEecchhhhhcCh--HHHHHHH----HHHHHHHHHcCCCEEEEC
Confidence 5666777766531 1112344 445899999999999866
No 348
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=29.76 E-value=1.6e+02 Score=32.59 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=36.0
Q ss_pred cEEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhc
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTG-GSLEESKEALAIAETD 67 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~ 67 (319)
.++|.|||....-.+| ...+++++++|++.|...+.+.- .+........+.++++
T Consensus 4 ~fv~LHvHT~ySlLdg--------~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~ 59 (1046)
T PRK05672 4 PYAELHCHSNFSFLDG--------ASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKEL 59 (1046)
T ss_pred ceeeccccccCccccc--------CCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHC
Confidence 5789999986532232 25789999999999998766542 1233344444555554
No 349
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.73 E-value=3.9e+02 Score=23.52 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=6.0
Q ss_pred CCChHHHHHHHH
Q 020985 280 GINDIDQLSRTL 291 (319)
Q Consensus 280 ~is~~e~~~~~~ 291 (319)
|+.+.+++.+..
T Consensus 201 GI~~~~di~~~~ 212 (241)
T PRK13585 201 GVTTLDDLRALK 212 (241)
T ss_pred CCCCHHHHHHHH
Confidence 343466666543
No 350
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=29.66 E-value=2.7e+02 Score=26.86 Aligned_cols=127 Identities=13% Similarity=0.109 Sum_probs=65.8
Q ss_pred HHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEE
Q 020985 36 LSRAWSSGVDRIIVTG-GSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIG 114 (319)
Q Consensus 36 l~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIG 114 (319)
+.+..++|.+ +|=++ -+.++.+.+.++.++.+ +=..+-||=.+- -.++.+
T Consensus 48 i~~L~~aGce-iVRvav~~~~~a~al~~I~~~~~-iPlvADIHFd~~----------lAl~a~----------------- 98 (360)
T PRK00366 48 IKRLARAGCE-IVRVAVPDMEAAAALPEIKKQLP-VPLVADIHFDYR----------LALAAA----------------- 98 (360)
T ss_pred HHHHHHcCCC-EEEEccCCHHHHHhHHHHHHcCC-CCEEEecCCCHH----------HHHHHH-----------------
Confidence 4566778887 44444 35666666666766654 212233442210 112222
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCC
Q 020985 115 ECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNM 194 (319)
Q Consensus 115 EiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~ 194 (319)
|-|.|.-|.+..+...-.+-|++.++.|+++++|+=|=.-.. .---+++++|+...+..++-+ -.+.++-+-++||
T Consensus 99 ~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~G-SL~~~~~~~yg~~t~eamveS---Al~~~~~le~~~f 174 (360)
T PRK00366 99 EAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAG-SLEKDLLEKYGEPTPEALVES---ALRHAKILEELGF 174 (360)
T ss_pred HhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCc-cChHHHHHHcCCCCHHHHHHH---HHHHHHHHHHCCC
Confidence 234443343333332224568999999999999998876422 112356667753222222222 2444555556676
Q ss_pred e
Q 020985 195 Y 195 (319)
Q Consensus 195 y 195 (319)
+
T Consensus 175 ~ 175 (360)
T PRK00366 175 D 175 (360)
T ss_pred C
Confidence 4
No 351
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=29.60 E-value=2.1e+02 Score=23.67 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccc------hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHC
Q 020985 132 RKYFEKQFELAYATKLPMFLHMREA------AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 132 ~~vf~~qlelA~~~~~Pv~iH~r~a------~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~ 192 (319)
..-|+..++.+.+ +..+.|..... .+.+++++++++. ..++++.+|+ .+.++.+.+.
T Consensus 48 i~tL~e~l~~~~~-~~~i~leiK~~~~~~~~~~~l~~~i~~~~~-~~~v~i~s~~--~~~l~~~~~~ 110 (189)
T cd08556 48 IPTLEEVLELVKG-GVGLNIELKEPTRYPGLEAKVAELLREYGL-EERVVVSSFD--HEALRALKEL 110 (189)
T ss_pred CCCHHHHHHhccc-CcEEEEEECCCCCchhHHHHHHHHHHHcCC-cCCEEEEeCC--HHHHHHHHHh
Confidence 4457778888887 88888888653 3567788888763 3578889984 5666666554
No 352
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=29.53 E-value=6.1e+02 Score=25.68 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHcCCCEEEEe--CCCHHhHHHHHHHHHhcCC
Q 020985 31 DIATVLSRAWSSGVDRIIVT--GGSLEESKEALAIAETDGR 69 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~--~~~~~~~~~~~~l~~~~~~ 69 (319)
-.+..++++.++|++.+-+. .++.+..+..++.+++...
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~ 138 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGK 138 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCC
Confidence 34566888889999854332 3456666777777776654
No 353
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.47 E-value=2e+02 Score=26.69 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=9.5
Q ss_pred HHHHHcCCCcEEEEec
Q 020985 139 FELAYATKLPMFLHMR 154 (319)
Q Consensus 139 lelA~~~~~Pv~iH~r 154 (319)
..+|++...||.||.=
T Consensus 67 ~~~a~~~~vpv~lHlD 82 (281)
T PRK06806 67 VAAAKQAKVPVAVHFD 82 (281)
T ss_pred HHHHHHCCCCEEEECC
Confidence 3455566666666664
No 354
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=29.40 E-value=48 Score=29.89 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeCCC---HHh---HHHHHHHHHhcCCeEEeeecCCCCcccc
Q 020985 29 ASDIATVLSRAWSSGVDRIIVTGGS---LEE---SKEALAIAETDGRLFCTVGVHPTRCKEF 84 (319)
Q Consensus 29 ~~~~~~vl~~~~~~Gv~~~v~~~~~---~~~---~~~~~~l~~~~~~i~~~~GiHP~~~~~~ 84 (319)
..|..+-++++.+.|+.++++-|.. .+. +.++++.++.-..|.++.||-|.++..+
T Consensus 127 ~~d~~~ale~li~~Gv~RILTsGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l 188 (241)
T COG3142 127 CPDPLEALEQLIELGVERILTSGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAEL 188 (241)
T ss_pred cCCHHHHHHHHHHCCCcEEecCCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHH
Confidence 4677888999999999999887643 222 3344444443345779999998877644
No 355
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=29.26 E-value=2.6e+02 Score=25.99 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHh
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAET 66 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~ 66 (319)
+..++|+.+++.|..-.-....+.+..+.+++.+++
T Consensus 5 ~~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee 40 (284)
T PRK09195 5 STKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAE 40 (284)
T ss_pred cHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHH
Confidence 345566666665532111112344455555555544
No 356
>PRK13998 potassium-transporting ATPase subunit C; Provisional
Probab=29.25 E-value=72 Score=27.78 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=29.4
Q ss_pred CccchHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 020985 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCR 297 (319)
Q Consensus 263 n~P~~l~~v~~~iA~~~~is~~e~~~~~~~~N~~r 297 (319)
-.|..-..-+..||+.+|++ ++++.+++.+|...
T Consensus 131 ISp~aA~~Qv~RVA~argl~-~~~v~~LV~~~t~~ 164 (186)
T PRK13998 131 ITVENALKQAPRIADARHVS-TSRVADLIQHRKQR 164 (186)
T ss_pred CCHHHHHHHHHHHHHHhCcC-HHHHHHHHHHhccc
Confidence 45667777788999999999 99999999999874
No 357
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.21 E-value=2.1e+02 Score=27.49 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccch------HHHHHHHHhccCC-C-cceEEEeCC-CCHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAA------ADFCAIVERNKDR-F-TGGVTHSFT-GSAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~------~~~l~il~~~~~~-~-~~~i~H~f~-g~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-.-... ..+..+++..... . ..+.+|-=- .+.+.+++.++.||
T Consensus 29 e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~Gf 99 (347)
T PRK09196 29 EQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGF 99 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 4577888999999999998774321 2222233322111 1 245666333 36888899999884
No 358
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=29.20 E-value=5.2e+02 Score=25.91 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCCEEEEeC--CCHHhHHHHHHHHHhcCC
Q 020985 32 IATVLSRAWSSGVDRIIVTG--GSLEESKEALAIAETDGR 69 (319)
Q Consensus 32 ~~~vl~~~~~~Gv~~~v~~~--~~~~~~~~~~~l~~~~~~ 69 (319)
.+.+++.+.+.|++.+-+.. ++.+..+..++.+++...
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~ 146 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGK 146 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCC
Confidence 45678889999998554432 456667777788887654
No 359
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=29.11 E-value=3e+02 Score=25.62 Aligned_cols=83 Identities=8% Similarity=0.087 Sum_probs=46.8
Q ss_pred cCCCcEEEEeccc-hHHHHHHHHhccCCCcceEEEeCCC---CHHHHHHHHHCCCeEeecccccc-----Ch-----hhH
Q 020985 144 ATKLPMFLHMREA-AADFCAIVERNKDRFTGGVTHSFTG---SAEDRDKLLTFNMYIGINGCSLK-----TA-----ENL 209 (319)
Q Consensus 144 ~~~~Pv~iH~r~a-~~~~l~il~~~~~~~~~~i~H~f~g---~~~~~~~~l~~g~y~s~sg~~~~-----~~-----~~~ 209 (319)
..+.++.+|+-.. ....+..+.+...+ .+-+-..+. +.+.++. +..|-.+.++-...+ +. .++
T Consensus 208 ~~~~~v~~H~C~~~~~~~~~~l~~~~vd--~~~lE~~~~~~~~l~~l~~-~~~~k~v~lGvv~~~~~~vE~~e~v~~ri~ 284 (324)
T PF01717_consen 208 GEDATVGVHVCRGNYPSILPLLADLNVD--AFFLEFADRRAGDLEPLRE-LPSGKKVVLGVVDTKSPEVESPEEVADRIE 284 (324)
T ss_dssp TTTSEEEEEESSSCHCTTHHHHHCSS-S--EEEEEETSSTTGGGHHCHC-TTTTSEEEEEES-TTSSS--THHHHHHHHH
T ss_pred CCCCEEEEEecCccchhhHHHHhhcccc--eEEeecccCCcccHHHHHh-CcCCceEEEEEEcCCCCCcCCHHHHHHHHH
Confidence 3689999999643 44555666665421 223333332 2333344 335655555332122 11 124
Q ss_pred HHHhcCCCCCEEEcCCCCCc
Q 020985 210 DVVRGIPIERMMIETDSPYC 229 (319)
Q Consensus 210 ~~l~~ip~drlLlETD~P~~ 229 (319)
++++.+|++|+.+-+||-+.
T Consensus 285 ~a~~~~~~~~l~~sPdCGfa 304 (324)
T PF01717_consen 285 EALEYVPLEQLWLSPDCGFA 304 (324)
T ss_dssp HHHTTS-GGGEEEEESSTST
T ss_pred HHHhcCccccEEEcCCCCCC
Confidence 78889999999999999984
No 360
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=28.99 E-value=2e+02 Score=27.57 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=56.8
Q ss_pred HHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEE
Q 020985 36 LSRAWSSGVDRIIVTG-GSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIG 114 (319)
Q Consensus 36 l~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIG 114 (319)
++++.++|.+ +|=++ -+.++.+.+.++.++.+ +=.-.-||=.+ ..+.+ ++
T Consensus 42 I~~L~~aG~d-IVRvtv~~~e~A~A~~~Ik~~~~-vPLVaDiHf~~--------------rla~~------------~~- 92 (361)
T COG0821 42 IKALERAGCD-IVRVTVPDMEAAEALKEIKQRLN-VPLVADIHFDY--------------RLALE------------AA- 92 (361)
T ss_pred HHHHHHcCCC-EEEEecCCHHHHHHHHHHHHhCC-CCEEEEeeccH--------------HHHHH------------hh-
Confidence 4667788987 44444 45677777777777652 11122233111 11111 12
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhcc
Q 020985 115 ECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNK 168 (319)
Q Consensus 115 EiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~ 168 (319)
|+|+|.+|.+..+. ..++-|+...+.|+++|+|+=|=.- +..---+++++|+
T Consensus 93 ~~g~~k~RINPGNi-g~~~~v~~vVe~Ak~~g~piRIGVN-~GSLek~~~~ky~ 144 (361)
T COG0821 93 ECGVDKVRINPGNI-GFKDRVREVVEAAKDKGIPIRIGVN-AGSLEKRLLEKYG 144 (361)
T ss_pred hcCcceEEECCccc-CcHHHHHHHHHHHHHcCCCEEEecc-cCchhHHHHHHhc
Confidence 56788777543221 2233699999999999999988663 2211123455554
No 361
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=28.86 E-value=2.7e+02 Score=26.08 Aligned_cols=64 Identities=14% Similarity=0.020 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHcCCCc----EEEEeccc-------hHHHHHHHHhccCC-CcceEEE--eCCCCHHHHHHHHHC
Q 020985 129 EIQRKYFEKQFELAYATKLP----MFLHMREA-------AADFCAIVERNKDR-FTGGVTH--SFTGSAEDRDKLLTF 192 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~P----v~iH~r~a-------~~~~l~il~~~~~~-~~~~i~H--~f~g~~~~~~~~l~~ 192 (319)
+.-.+.|...+++|..+|.+ |+||.... .+.+.+.+++.... ..+.++= .-.++.+++..+.+.
T Consensus 126 e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~~~~~ke~al~r~~~~l~~l~~~~~~~L~LEN~~~~~t~~ell~I~e~ 203 (303)
T PRK02308 126 ENSIKDLEYHAKLLDLMGIDDSSKINIHVGGAYGDKEKALERFIENIKKLPESIKKRLTLENDDKTYTVEELLYICEK 203 (303)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCccCCCHHHHHHHHHHHHHHhhHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 44578899999999999999 88998763 22333333332111 1233331 112677777777763
No 362
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=28.30 E-value=2.1e+02 Score=26.68 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEe
Q 020985 133 KYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~ 153 (319)
+..+..++.|.+.+.||+|-.
T Consensus 29 e~~~avi~AAee~~sPvIlq~ 49 (288)
T TIGR00167 29 ETINAVLEAAAEEKSPVIIQF 49 (288)
T ss_pred HHHHHHHHHHHHHCCCEEEEC
Confidence 345666777777777777655
No 363
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=27.58 E-value=37 Score=23.33 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=14.1
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHH
Q 020985 115 ECGLDYDRLHFCPSEIQRKYFEKQFELA 142 (319)
Q Consensus 115 EiGLD~~~~~~~~~~~Q~~vf~~qlelA 142 (319)
+.|++|.. ....+.=.+.|+.|+.-+
T Consensus 27 ~~G~~y~~--~~tK~~Lvk~fkKql~k~ 52 (54)
T PF09124_consen 27 SYGFEYNE--KDTKAQLVKIFKKQLKKA 52 (54)
T ss_dssp HTT----T--TS-HHHHHHHHHHHHHHH
T ss_pred HhCCcCCc--cccHHHHHHHHHHHHHHh
Confidence 56999863 234455568999998765
No 364
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.56 E-value=5.8e+02 Score=25.39 Aligned_cols=139 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEEeCC----------CHHhHHHHHHHHHhcCCeEE---eeecCCCCcccccccCCCHHHHHHHHHH
Q 020985 34 TVLSRAWSSGVDRIIVTGG----------SLEESKEALAIAETDGRLFC---TVGVHPTRCKEFEESGDPEKHFQALLSL 100 (319)
Q Consensus 34 ~vl~~~~~~Gv~~~v~~~~----------~~~~~~~~~~l~~~~~~i~~---~~GiHP~~~~~~~~~~~~~~~l~~l~~~ 100 (319)
.+++.+.++|+..+=+.+. +++.|+.+..+.+..|++.. +-|....-...+.+ +.+++..+.
T Consensus 30 ~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pd-----dvv~~~v~~ 104 (448)
T PRK12331 30 PILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYAD-----DVVESFVQK 104 (448)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCch-----hhHHHHHHH
Q ss_pred HHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEE---------EEeccchHHHHHHHHhccCCC
Q 020985 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMF---------LHMREAAADFCAIVERNKDRF 171 (319)
Q Consensus 101 l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~---------iH~r~a~~~~l~il~~~~~~~ 171 (319)
.. +.|+|..+.....-+... ++..++.|++.|+-+. .|+.+-..++.+-+.+.+...
T Consensus 105 A~------------~~Gvd~irif~~lnd~~n--~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~ 170 (448)
T PRK12331 105 SV------------ENGIDIIRIFDALNDVRN--LETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADS 170 (448)
T ss_pred HH------------HCCCCEEEEEEecCcHHH--HHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE
Q ss_pred cceEEEeCCCCHHHHHHHHH
Q 020985 172 TGGVTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 172 ~~~i~H~f~g~~~~~~~~l~ 191 (319)
..+.--.-...+..+.++++
T Consensus 171 I~i~Dt~G~l~P~~v~~lv~ 190 (448)
T PRK12331 171 ICIKDMAGILTPYVAYELVK 190 (448)
T ss_pred EEEcCCCCCCCHHHHHHHHH
No 365
>PRK14047 putative methyltransferase; Provisional
Probab=27.41 E-value=5.3e+02 Score=24.30 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=66.3
Q ss_pred EEEEEeecCCCCCC------CCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHH----HHHHHHhccCCCcceEEEeC
Q 020985 110 VVAIGECGLDYDRL------HFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAAD----FCAIVERNKDRFTGGVTHSF 179 (319)
Q Consensus 110 ~~aIGEiGLD~~~~------~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~----~l~il~~~~~~~~~~i~H~f 179 (319)
.+-+|-|=.+.+.. ..-+++.-+++..+|.+++.++|.|.++|......+ -++...+... ..+++-+.
T Consensus 27 tvL~GsIFY~~HkIV~D~~~GiFDk~~Ae~Lin~q~elsd~TGnp~~~~I~g~t~EA~~kYidfv~ei~d--~PfliDS~ 104 (310)
T PRK14047 27 TVLAGTIFYNRHKIVTDEDKGLFDREAAEKLVNLQEEMSDETGNPCVVHIFGTTPEAITNYIDFFSEVTD--SPFLIDSP 104 (310)
T ss_pred ceEEEEEeecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhhccC--CCeEecCC
Confidence 45566665443321 123467789999999999999999999999865443 3444444332 34677776
Q ss_pred CCCHHHH--HHHHHCC-----CeEeeccccccChhhHHHHhcCCCC-CEEEcCCC
Q 020985 180 TGSAEDR--DKLLTFN-----MYIGINGCSLKTAENLDVVRGIPIE-RMMIETDS 226 (319)
Q Consensus 180 ~g~~~~~--~~~l~~g-----~y~s~sg~~~~~~~~~~~l~~ip~d-rlLlETD~ 226 (319)
.+....+ +..-+.| +|-|++..+ .++-.++++.-.++ -|++-=|.
T Consensus 105 ~~~~R~aa~~yv~E~GladR~IYNSIn~s~--~~~EieaL~~sdi~aaIiLaFn~ 157 (310)
T PRK14047 105 EGEVRAAAAEYVTEIGLADRAIYNSINMSI--HESEIEALKQSDIDSSIVLGFNA 157 (310)
T ss_pred CHHHHHHHHhhhhhhchhHHHHHhhcCccC--CHHHHHHHHhcCCCeEEEEecCC
Confidence 5543222 2222233 688887642 23345666665443 45554443
No 366
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.26 E-value=3.1e+02 Score=25.52 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHh
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAET 66 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~ 66 (319)
+..++|+.+++.|..-......+.+..+.+++.+++
T Consensus 5 ~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee 40 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAE 40 (284)
T ss_pred cHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHH
Confidence 345666666666532111122345555555555544
No 367
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.93 E-value=1.9e+02 Score=32.08 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=34.6
Q ss_pred EEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhc
Q 020985 6 LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAETD 67 (319)
Q Consensus 6 iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~ 67 (319)
++|.|+|....-.++ ...+++++++|++.|...+.+.-- +........+.+++.
T Consensus 1 fv~LHvHS~yS~Ldg--------~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~ 55 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDG--------AAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKA 55 (1022)
T ss_pred CeeeeecccCccccc--------cCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHc
Confidence 478899986532232 257899999999999997766521 233333444455543
No 368
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=26.90 E-value=5e+02 Score=24.89 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEec
Q 020985 131 QRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 131 Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
-.+..+...+++++++.+++||.+
T Consensus 186 ~~~~a~~L~~l~~~~~~~lIIND~ 209 (347)
T PRK02615 186 RLEEAKKLKELCHRYGALFIVNDR 209 (347)
T ss_pred HHHHHHHHHHHHHHhCCeEEEeCh
Confidence 345667778888889999999875
No 369
>PRK08005 epimerase; Validated
Probab=26.86 E-value=4.5e+02 Score=23.25 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=49.3
Q ss_pred cCCCcEEEEe-ccchHHHHHHHHhccCCCcceEEEeCC-CC-HHHHHHHHHCCCeEeecccc-ccChhhHHHHhcCCCCC
Q 020985 144 ATKLPMFLHM-REAAADFCAIVERNKDRFTGGVTHSFT-GS-AEDRDKLLTFNMYIGINGCS-LKTAENLDVVRGIPIER 219 (319)
Q Consensus 144 ~~~~Pv~iH~-r~a~~~~l~il~~~~~~~~~~i~H~f~-g~-~~~~~~~l~~g~y~s~sg~~-~~~~~~~~~l~~ip~dr 219 (319)
..++|+-+|. +...+..++.+.+.+. ..+.+|.=+ .. ..+++.+-+.|+-.++.-.- +.-......+.. .|.
T Consensus 56 ~t~~~~DvHLMv~~P~~~i~~~~~~ga--d~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~--vD~ 131 (210)
T PRK08005 56 QTRHPLSFHLMVSSPQRWLPWLAAIRP--GWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQ--LDA 131 (210)
T ss_pred cCCCCeEEEeccCCHHHHHHHHHHhCC--CEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHh--cCE
Confidence 3689999998 3445666676777664 356778642 23 34556666678887765331 112223455555 788
Q ss_pred EEEcCCCCC
Q 020985 220 MMIETDSPY 228 (319)
Q Consensus 220 lLlETD~P~ 228 (319)
+|+=|=-|-
T Consensus 132 VlvMsV~PG 140 (210)
T PRK08005 132 LMIMTSEPD 140 (210)
T ss_pred EEEEEecCC
Confidence 888666553
No 370
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=26.84 E-value=5.7e+02 Score=24.47 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=31.6
Q ss_pred EeecCCCCCCCCC-CHHHHHHHHHHHHHHHHcCCCcEEEEeccc--h----HHHHHHHHhcc
Q 020985 114 GECGLDYDRLHFC-PSEIQRKYFEKQFELAYATKLPMFLHMREA--A----ADFCAIVERNK 168 (319)
Q Consensus 114 GEiGLD~~~~~~~-~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a--~----~~~l~il~~~~ 168 (319)
+|.|||--|.+.. +-+.-.+-....+..|+++++-|=+-+.-. . -++.+++.+.+
T Consensus 131 ~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~EiPaipg~e~~i~e~~~~~~~~~ 192 (353)
T COG2108 131 AEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEIPAIPGEEEAILEFAKALDENG 192 (353)
T ss_pred HhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeecCCCcchHHHHHHHHHHHHhcc
Confidence 3668885443321 122333445667888889998888877632 2 24445555554
No 371
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=26.72 E-value=2.1e+02 Score=26.66 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccch------HHHHHHHHhccCC-CcceEE---EeCCCCHHHHHHHHHCCC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAA------ADFCAIVERNKDR-FTGGVT---HSFTGSAEDRDKLLTFNM 194 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~------~~~l~il~~~~~~-~~~~i~---H~f~g~~~~~~~~l~~g~ 194 (319)
+..+..++.|.+.+.||+|-.-... +.+..+++..... ...+.+ ||. +.+.+++.++.||
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHLDH~~--~~e~i~~ai~~Gf 97 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHLDHGK--DFEDIKRAIDAGF 97 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE---SHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeecccCC--CHHHHHHHHHhCc
Confidence 4577888999999999998885431 2222333222110 123444 554 5888999999875
No 372
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=26.60 E-value=1.8e+02 Score=25.97 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred EEEEeccc--hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHC-------CCeEeeccccc---cChhhHHHHhcCC
Q 020985 149 MFLHMREA--AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF-------NMYIGINGCSL---KTAENLDVVRGIP 216 (319)
Q Consensus 149 v~iH~r~a--~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~-------g~y~s~sg~~~---~~~~~~~~l~~ip 216 (319)
|++|.... ..++++.+++.+.+ .++.=+..-+.+.++.+++. .+..+|+|..| .-.+++++-+.++
T Consensus 88 It~H~E~~~~~~r~i~~Ik~~G~k--aGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~ 165 (220)
T COG0036 88 ITFHAEATEHIHRTIQLIKELGVK--AGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMID 165 (220)
T ss_pred EEEEeccCcCHHHHHHHHHHcCCe--EEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhc
Q ss_pred -CCCEEEcCCC
Q 020985 217 -IERMMIETDS 226 (319)
Q Consensus 217 -~drlLlETD~ 226 (319)
...+++|-|.
T Consensus 166 ~~~~~~IeVDG 176 (220)
T COG0036 166 ERLDILIEVDG 176 (220)
T ss_pred ccCCeEEEEeC
No 373
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=26.60 E-value=1.4e+02 Score=30.47 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=25.3
Q ss_pred EEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcC-CCcEEEEecc
Q 020985 113 IGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT-KLPMFLHMRE 155 (319)
Q Consensus 113 IGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~-~~Pv~iH~r~ 155 (319)
+|-+|+.|--..... .+--+..+.+|++. .+||+||..+
T Consensus 146 L~~~G~~yv~fKPGt----IeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 146 LGDDGFPYVAFKPGT----IEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred HhhcCceeEEecCCc----HHHHHHHHHHHhcCCCCceEEEEec
Confidence 445577764222122 23366779999986 7999999854
No 374
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=26.53 E-value=1.8e+02 Score=32.58 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=34.9
Q ss_pred EEeeccCCCCccccccccCCcCCCCCHHHHHHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhc
Q 020985 6 LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGG-SLEESKEALAIAETD 67 (319)
Q Consensus 6 iiD~H~Hl~~~~~~~~~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~ 67 (319)
++|.|+|....-.++ ...+++++++|++.|+..+.+.-- +........+.+++.
T Consensus 2 fv~LHvHS~ySlLdg--------~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~ 56 (1135)
T PRK05673 2 FVHLHVHSEYSLLDG--------AAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGA 56 (1135)
T ss_pred cccceecccCchhhh--------cCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHc
Confidence 678999987532232 257899999999999987766432 233333344455544
No 375
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=26.52 E-value=2.6e+02 Score=25.79 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCEEEE---eCCCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHh
Q 020985 34 TVLSRAWSSGVDRIIV---TGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKE 103 (319)
Q Consensus 34 ~vl~~~~~~Gv~~~v~---~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~ 103 (319)
+++.++-++|. ++++ ++.+.++.+.+++++++. ++..++|.+-.+.. .++++.+++.+
T Consensus 82 e~~~~AL~aGk-hVl~EKPla~t~~ea~~l~~~a~~~-~~~l~v~~~~Rf~p----------~~~~~k~li~~ 142 (342)
T COG0673 82 ELALAALEAGK-HVLCEKPLALTLEEAEELVELARKA-GVKLMVGFNRRFDP----------AVQALKELIDS 142 (342)
T ss_pred HHHHHHHhcCC-EEEEcCCCCCCHHHHHHHHHHHHHc-CCceeeehhhhcCH----------HHHHHHHHHhc
Confidence 45566677776 4443 367899999999999987 67778888765543 45677777764
No 376
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.32 E-value=77 Score=26.75 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeCCC
Q 020985 28 HASDIATVLSRAWSSGVDRIIVTGGS 53 (319)
Q Consensus 28 h~~~~~~vl~~~~~~Gv~~~v~~~~~ 53 (319)
|.++..++..++++.||+.|++++++
T Consensus 57 hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 57 HLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cCccHHHHHHHHHHcCCceEEEEEeC
Confidence 66888899999999999999998764
No 377
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.31 E-value=4.7e+02 Score=23.36 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHH-------------HHHHHHHHHHHcCCCcEEEEec-cc-
Q 020985 92 KHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQR-------------KYFEKQFELAYATKLPMFLHMR-EA- 156 (319)
Q Consensus 92 ~~l~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~-------------~vf~~qlelA~~~~~Pv~iH~r-~a- 156 (319)
.+.+.+..+.+ ..+-+| |+|+.+.-.-......|. ..|+..-++.++.+.|+++=+. +.
T Consensus 15 ~~~~~~~~l~~-----~Gad~i-el~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~ 88 (242)
T cd04724 15 TTLEILKALVE-----AGADII-ELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPI 88 (242)
T ss_pred HHHHHHHHHHH-----CCCCEE-EECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHH
Confidence 34444544433 246678 999988633223344553 4455555555556889765434 22
Q ss_pred ----hHHHHHHHHhccCCCcceEEEeCCCCHHHH----HHHHHCCCeEee
Q 020985 157 ----AADFCAIVERNKDRFTGGVTHSFTGSAEDR----DKLLTFNMYIGI 198 (319)
Q Consensus 157 ----~~~~l~il~~~~~~~~~~i~H~f~g~~~~~----~~~l~~g~y~s~ 198 (319)
.++.++.+++.+. ..+++|-- ..+.. +.+.+.|+...+
T Consensus 89 ~~~G~~~fi~~~~~aG~--~giiipDl--~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 89 LQYGLERFLRDAKEAGV--DGLIIPDL--PPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHhCHHHHHHHHHHCCC--cEEEECCC--CHHHHHHHHHHHHHcCCcEEE
Confidence 4777888887764 25566322 12343 333345765443
No 378
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=26.12 E-value=5.1e+02 Score=23.69 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEec
Q 020985 128 SEIQRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 128 ~~~Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
.+.++++++...+.+.. ++||+.++.
T Consensus 53 ~~Er~~~~~~~~~~~~~-~~~viagv~ 78 (288)
T cd00954 53 VEERKQIAEIVAEAAKG-KVTLIAHVG 78 (288)
T ss_pred HHHHHHHHHHHHHHhCC-CCeEEeccC
Confidence 34444555555544432 455555553
No 379
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=25.91 E-value=4.6e+02 Score=23.06 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCC------CHHhHHHHHHHHHhcCC--eEEeeecCCCCcccccccCCCHHHHHHHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGG------SLEESKEALAIAETDGR--LFCTVGVHPTRCKEFEESGDPEKHFQALLSLA 101 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~------~~~~~~~~~~l~~~~~~--i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l 101 (319)
.+++++ ..+.+.|.+++=+++. +|+ .. .++.+.+..+ ++.++--+..... +++ ++++.+.+-+
T Consensus 8 ~s~~~a-~~A~~~GAdRiELc~~l~~GGlTPS-~g-~i~~~~~~~~ipv~vMIRpr~gdF~-Ys~-----~E~~~M~~dI 78 (201)
T PF03932_consen 8 ESLEDA-LAAEAGGADRIELCSNLEVGGLTPS-LG-LIRQAREAVDIPVHVMIRPRGGDFV-YSD-----EEIEIMKEDI 78 (201)
T ss_dssp SSHHHH-HHHHHTT-SEEEEEBTGGGT-B----HH-HHHHHHHHTTSEEEEE--SSSS-S----H-----HHHHHHHHHH
T ss_pred CCHHHH-HHHHHcCCCEEEECCCccCCCcCcC-HH-HHHHHHhhcCCceEEEECCCCCCcc-CCH-----HHHHHHHHHH
Confidence 456564 4567889999988852 232 22 2333333333 4555543332111 221 4455544444
Q ss_pred HhccCC-CCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEec-c---chHHHHHHHHhccCCCcceEE
Q 020985 102 KEGIEK-GKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMR-E---AAADFCAIVERNKDRFTGGVT 176 (319)
Q Consensus 102 ~~~~~~-~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r-~---a~~~~l~il~~~~~~~~~~i~ 176 (319)
+...+. -.-+.+|-.-=| -....+..++.++.|+ ++|+.+|-- + ...+.++.|.+.+. .+++-
T Consensus 79 ~~~~~~GadG~VfG~L~~d--------g~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~--~rVLT 146 (201)
T PF03932_consen 79 RMLRELGADGFVFGALTED--------GEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGF--DRVLT 146 (201)
T ss_dssp HHHHHTT-SEEEE--BETT--------SSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT---SEEEE
T ss_pred HHHHHcCCCeeEEEeECCC--------CCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCC--CEEEC
Confidence 321111 112233322111 1245677888899996 899999962 1 23455666767653 24333
Q ss_pred EeCCC----CHHHHHHHHHC---CCeEeeccccccChhhHHHHhcC
Q 020985 177 HSFTG----SAEDRDKLLTF---NMYIGINGCSLKTAENLDVVRGI 215 (319)
Q Consensus 177 H~f~g----~~~~~~~~l~~---g~y~s~sg~~~~~~~~~~~l~~i 215 (319)
++-.. ..+.++++++. ++-+=.+|- .+.....++++..
T Consensus 147 SGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgG-v~~~nv~~l~~~t 191 (201)
T PF03932_consen 147 SGGAPTALEGIENLKELVEQAKGRIEIMPGGG-VRAENVPELVEET 191 (201)
T ss_dssp STTSSSTTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEecCC-CCHHHHHHHHHhh
Confidence 43332 36777777764 343333332 2333344555543
No 380
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=25.87 E-value=4.8e+02 Score=23.89 Aligned_cols=88 Identities=11% Similarity=0.191 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcce----EEEeCCCCHHHHHHHHHC----CCeEeecccccc
Q 020985 133 KYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGG----VTHSFTGSAEDRDKLLTF----NMYIGINGCSLK 204 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~----i~H~f~g~~~~~~~~l~~----g~y~s~sg~~~~ 204 (319)
+-++..++.|.++|+=+.+-+.+ .+++-..++ .+.+. -+ =+|.|.-+.++..++... -+++|=||. .
T Consensus 143 ~~l~el~~~A~~LGm~~LVEVh~-~eEl~rAl~-~ga~i-IGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI--~ 217 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEVHN-EEELERALK-LGAKI-IGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGI--S 217 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEECC-HHHHHHHHh-CCCCE-EEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCC--C
Confidence 34777889999999887655432 333333343 33221 11 378888888887777764 478888885 3
Q ss_pred ChhhHHHHhcCCCCCEEEcCC
Q 020985 205 TAENLDVVRGIPIERMMIETD 225 (319)
Q Consensus 205 ~~~~~~~l~~ip~drlLlETD 225 (319)
+.+-.+.+...+.+-+|++|=
T Consensus 218 ~~~dv~~l~~~ga~a~LVG~s 238 (254)
T COG0134 218 TPEDVRRLAKAGADAFLVGEA 238 (254)
T ss_pred CHHHHHHHHHcCCCEEEecHH
Confidence 444455666677888998874
No 381
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.70 E-value=7.3e+02 Score=25.67 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCCEEEEe--CCCHHhHHHHHHHHHhcCC
Q 020985 32 IATVLSRAWSSGVDRIIVT--GGSLEESKEALAIAETDGR 69 (319)
Q Consensus 32 ~~~vl~~~~~~Gv~~~v~~--~~~~~~~~~~~~l~~~~~~ 69 (319)
.+..++.+.++|++.+-+. ..+.+.....++.+++...
T Consensus 99 v~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~ 138 (593)
T PRK14040 99 VERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGA 138 (593)
T ss_pred HHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCC
Confidence 3556888899999855443 2345566677888887764
No 382
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=25.61 E-value=51 Score=26.54 Aligned_cols=33 Identities=24% Similarity=0.117 Sum_probs=20.6
Q ss_pred CCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 020985 108 GKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKL 147 (319)
Q Consensus 108 ~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~ 147 (319)
...+.+||+|||..- ... .-....+..|+++|.
T Consensus 80 ~~~~~~GEl~L~G~i-r~v------~~~~~~~~~A~~~G~ 112 (121)
T PF13541_consen 80 EDTVFIGELGLDGEI-RPV------PGILPRIIEAKKLGF 112 (121)
T ss_pred CCEEEEEEecCCccE-Eec------CcHHHHHHHHHHCCC
Confidence 579999999999742 111 113334557777774
No 383
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.55 E-value=4.7e+02 Score=23.91 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeee
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVG 75 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~G 75 (319)
++.+++++.+++.|+..+.+++-+. .-+++..+++.....+++++
T Consensus 131 ee~~~~~~~~~~~gi~~I~lv~PtT-~~eri~~i~~~a~gFIY~vS 175 (263)
T CHL00200 131 EESDYLISVCNLYNIELILLIAPTS-SKSRIQKIARAAPGCIYLVS 175 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCC-CHHHHHHHHHhCCCcEEEEc
Confidence 3566789999999999888775322 22345555555554444555
No 384
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=25.55 E-value=4.6e+02 Score=22.97 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCC------HHhHHHHHHHHHhcC-CeEEeeecCCCCcccccccCCCHHHHHHHHHHHH
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGS------LEESKEALAIAETDG-RLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAK 102 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~------~~~~~~~~~l~~~~~-~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~ 102 (319)
.++.++++++...|++.+++.-.+ ..++..+.++++..+ .++.+-|+.= ++.+++++.
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~---------------~~d~~~~~~ 94 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRS---------------LEDAKKLLS 94 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCC---------------HHHHHHHHH
Confidence 478899999999999988876432 234455556666543 3666666641 233333333
Q ss_pred hccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc--------------------hHHHHH
Q 020985 103 EGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA--------------------AADFCA 162 (319)
Q Consensus 103 ~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a--------------------~~~~l~ 162 (319)
. .-..+.+|...++ .. +.++...+...+-..++.+=++.. ..+..+
T Consensus 95 ~---G~~~vilg~~~l~-------~~----~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (232)
T TIGR03572 95 L---GADKVSINTAALE-------NP----DLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAR 160 (232)
T ss_pred c---CCCEEEEChhHhc-------CH----HHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHH
Confidence 1 1124555533322 11 222222222111113334444331 123334
Q ss_pred HHHhccCCCcceEEEeCCC-------CHHHHHHHHHC-CCeEeeccccccChhhHHHHhcCCCCCEEEcC
Q 020985 163 IVERNKDRFTGGVTHSFTG-------SAEDRDKLLTF-NMYIGINGCSLKTAENLDVVRGIPIERMMIET 224 (319)
Q Consensus 163 il~~~~~~~~~~i~H~f~g-------~~~~~~~~l~~-g~y~s~sg~~~~~~~~~~~l~~ip~drlLlET 224 (319)
.+.+.+. ..+++|..+. +.+.++++.+. +.-+-.+|.+....+..++++....+-+++.|
T Consensus 161 ~~~~~G~--d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 161 EAEQLGA--GEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred HHHHcCC--CEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEeh
Confidence 4444432 2567777543 25777777654 44444555443334455667778888888876
No 385
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=25.51 E-value=4.8e+02 Score=24.98 Aligned_cols=125 Identities=16% Similarity=0.088 Sum_probs=67.2
Q ss_pred HHHHHHcCCCEEEEeCC-CHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCCEEEEE
Q 020985 36 LSRAWSSGVDRIIVTGG-SLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIG 114 (319)
Q Consensus 36 l~~~~~~Gv~~~v~~~~-~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~aIG 114 (319)
+.++.++|.+ +|=+++ +.++.+.+-++.+..+ +=...=||=.+. -.+..+
T Consensus 40 I~~L~~aGce-iVRvavp~~~~A~al~~I~~~~~-iPlVADIHFd~~----------lAl~a~----------------- 90 (346)
T TIGR00612 40 IRALEEAGCD-IVRVTVPDRESAAAFEAIKEGTN-VPLVADIHFDYR----------LAALAM----------------- 90 (346)
T ss_pred HHHHHHcCCC-EEEEcCCCHHHHHhHHHHHhCCC-CCEEEeeCCCcH----------HHHHHH-----------------
Confidence 4567788987 444443 5666666667766554 212233442221 112222
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccc-hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCC
Q 020985 115 ECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREA-AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFN 193 (319)
Q Consensus 115 EiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a-~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g 193 (319)
|-|.|..|.+..+. ...+-|++.++.|+++++|+=|=.-.. .+ -+++++|+...+..++-+ -.+.++-+-++|
T Consensus 91 ~~g~dkiRINPGNi-g~~e~v~~vv~~ak~~~ipIRIGVN~GSL~--~~~~~kyg~~t~eamveS---Al~~v~~le~~~ 164 (346)
T TIGR00612 91 AKGVAKVRINPGNI-GFRERVRDVVEKARDHGKAMRIGVNHGSLE--RRLLEKYGDATAEAMVQS---ALEEAAILEKLG 164 (346)
T ss_pred HhccCeEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCc--HHHHHHcCCCCHHHHHHH---HHHHHHHHHHCC
Confidence 22555444332222 124668999999999999998876422 22 266777763222223222 244555555667
Q ss_pred Ce
Q 020985 194 MY 195 (319)
Q Consensus 194 ~y 195 (319)
|+
T Consensus 165 F~ 166 (346)
T TIGR00612 165 FR 166 (346)
T ss_pred CC
Confidence 65
No 386
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=25.19 E-value=1.4e+02 Score=28.71 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhcc
Q 020985 126 CPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNK 168 (319)
Q Consensus 126 ~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~ 168 (319)
..-+.|..+++..|.+|++.|.|+++=.+......-+++++.+
T Consensus 245 ~~s~~q~~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~ 287 (345)
T PF07611_consen 245 TFSETQFFFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELK 287 (345)
T ss_pred CCChhHHHHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhc
Confidence 4457899999999999999999999999988877777777654
No 387
>PLN02591 tryptophan synthase
Probab=25.15 E-value=5.2e+02 Score=23.49 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeec
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGV 76 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~Gi 76 (319)
..+++.+++++.|+..+.+++-+.. -+++..+++..+..+++++.
T Consensus 119 e~~~~~~~~~~~gl~~I~lv~Ptt~-~~ri~~ia~~~~gFIY~Vs~ 163 (250)
T PLN02591 119 ETEALRAEAAKNGIELVLLTTPTTP-TERMKAIAEASEGFVYLVSS 163 (250)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHhCCCcEEEeeC
Confidence 4567899999999998888743222 22445555555555555554
No 388
>PRK06233 hypothetical protein; Provisional
Probab=24.76 E-value=4.2e+02 Score=25.53 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=46.9
Q ss_pred CCcEEEEeccc-----------hHHHHHHHHhccCCCcceEEEeC----CCCHHHHHHHHHC--CCeEeecccccc----
Q 020985 146 KLPMFLHMREA-----------AADFCAIVERNKDRFTGGVTHSF----TGSAEDRDKLLTF--NMYIGINGCSLK---- 204 (319)
Q Consensus 146 ~~Pv~iH~r~a-----------~~~~l~il~~~~~~~~~~i~H~f----~g~~~~~~~~l~~--g~y~s~sg~~~~---- 204 (319)
++.|.+|.-.. .+.+++.|.+... ..+.-=| +|+.+.++.+-.. +--+.++....+
T Consensus 236 d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~~v---d~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~v 312 (372)
T PRK06233 236 DLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQLNY---DGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPEL 312 (372)
T ss_pred CCEEEEEeeCCCCCCcccccCcHHHHHHHHHhCCC---CEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCC
Confidence 55688898642 4578888866542 2232222 3445556655321 333333221111
Q ss_pred -Ch-----hhHHHHhcCCCCCEEEcCCCCCc
Q 020985 205 -TA-----ENLDVVRGIPIERMMIETDSPYC 229 (319)
Q Consensus 205 -~~-----~~~~~l~~ip~drlLlETD~P~~ 229 (319)
+. +++++++.+|++||.+-+||.+.
T Consensus 313 E~~e~I~~rI~~a~~~v~~e~l~lspdCGf~ 343 (372)
T PRK06233 313 EDEDEIIARIDEATEYVPLSNLALSTQCGFA 343 (372)
T ss_pred CCHHHHHHHHHHHHHhCCHHHEEecCCCCCc
Confidence 11 23478889999999999999983
No 389
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=24.70 E-value=7.2e+02 Score=24.91 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCEEEEe--CCCHHhHHHHHHHHHhcC
Q 020985 32 IATVLSRAWSSGVDRIIVT--GGSLEESKEALAIAETDG 68 (319)
Q Consensus 32 ~~~vl~~~~~~Gv~~~v~~--~~~~~~~~~~~~l~~~~~ 68 (319)
++..++++.++|++.+-+. .++.+.....++.+++..
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G 135 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHG 135 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCC
Confidence 3456888899999855443 244556666777887765
No 390
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=24.52 E-value=2.6e+02 Score=27.30 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=28.5
Q ss_pred HcCCCcEEEEe-ccc--hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCC---eEeeccc
Q 020985 143 YATKLPMFLHM-REA--AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNM---YIGINGC 201 (319)
Q Consensus 143 ~~~~~Pv~iH~-r~a--~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~---y~s~sg~ 201 (319)
.+.+..+.+|- +++ ...+++++.+.+. -+-+ .|..+++.+++.|+ -+.++|.
T Consensus 32 ~~~~~~~~~~yavKaN~~~~il~~l~~~G~-----g~dv--aS~~E~~~~~~~G~~~~~I~~~g~ 89 (423)
T cd06842 32 DRHGVDGRVYFARKANKSLALVRAAAAAGI-----GVDV--ASLAELRQALAAGVRGDRIVATGP 89 (423)
T ss_pred HHhCCCeEEEEEeccCCCHHHHHHHHHcCC-----CEEE--CCHHHHHHHHHCCCCCCeEEEECC
Confidence 33455566664 343 4566676666531 1222 25777888877775 2455554
No 391
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=24.51 E-value=2.5e+02 Score=28.39 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGS 53 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~ 53 (319)
.+++-|+++++.|++.++..-.+
T Consensus 93 ~Id~aLe~a~~~GirNILALRGD 115 (590)
T KOG0564|consen 93 MIDKALEQAKALGIRNILALRGD 115 (590)
T ss_pred HHHHHHHHHHHhCchhhhhhcCC
Confidence 46778999999999988876444
No 392
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=24.23 E-value=1.6e+02 Score=23.54 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcce
Q 020985 95 QALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGG 174 (319)
Q Consensus 95 ~~l~~~l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~ 174 (319)
+.+++++.. .+.++-|| +|-.... +.+. ++ ++...+.|.-+..-.-.+.-+++++|...+.+ ...
T Consensus 49 ~~l~~ll~~---~peivliG-TG~~~~~--~~~~----~~----~~~l~~~Gi~ve~m~T~aAcrTYN~L~~EgRr-V~A 113 (117)
T cd05126 49 EELEELLEE---GVEVIVIG-TGQSGAL--KVPP----ET----VEKLEKRGVEVLVLPTEEAVKRYNELAGKGRR-VLA 113 (117)
T ss_pred HHHHHHHhc---CCCEEEEc-CCCCccc--cCCH----HH----HHHHHhcCCEEEEcChHHHHHHHHHHHhCCCe-EEE
Confidence 455666653 57788887 4644210 0111 11 23445678888877778899999999877643 345
Q ss_pred EEE
Q 020985 175 VTH 177 (319)
Q Consensus 175 i~H 177 (319)
.+|
T Consensus 114 a~H 116 (117)
T cd05126 114 VIH 116 (117)
T ss_pred EEe
Confidence 677
No 393
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.17 E-value=3.2e+02 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEecc
Q 020985 131 QRKYFEKQFELAYATKLPMFLHMRE 155 (319)
Q Consensus 131 Q~~vf~~qlelA~~~~~Pv~iH~r~ 155 (319)
-.+-|++.=++|+++|.-+++|-..
T Consensus 92 ~~~~l~~iG~~a~~~~iRLS~Hp~q 116 (312)
T TIGR00629 92 AQKELREIGELAKTHQHRLTFHPGQ 116 (312)
T ss_pred HHHHHHHHHHHHHHcCeEEEECCCc
Confidence 3456777888999999999999864
No 394
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=24.03 E-value=6.3e+02 Score=24.05 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHcCCC----cEEEEeccchHHHHHHHHhccCCCcceEEEeCC------CCHHHHHHHHHCCCeEeecc
Q 020985 139 FELAYATKL----PMFLHMREAAADFCAIVERNKDRFTGGVTHSFT------GSAEDRDKLLTFNMYIGING 200 (319)
Q Consensus 139 lelA~~~~~----Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~------g~~~~~~~~l~~g~y~s~sg 200 (319)
++...++|+ .++.|+....++.++++++.+. .+.||-+ ....-++++++.|+-++++.
T Consensus 228 ~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~~g~----~v~~~P~~~~~~~~g~~~~~~~~~~Gv~v~lGt 295 (401)
T TIGR02967 228 LDVYDHYGLLGRRSVFAHCIHLSDEECQRLAETGA----AIAHCPTSNLFLGSGLFNLKKALEHGVRVGLGT 295 (401)
T ss_pred HHHHHHCCCCCCCeEEEecccCCHHHHHHHHHcCC----eEEEChHHHHHhccCCCCHHHHHHCCCeEEEec
Confidence 344444443 3679999888888899988642 3667732 12234678888898888753
No 395
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=23.96 E-value=52 Score=21.23 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=14.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHH
Q 020985 272 LEVVAGCKGINDIDQLSRTLYHN 294 (319)
Q Consensus 272 ~~~iA~~~~is~~e~~~~~~~~N 294 (319)
+..||+..|+| ...+.+.+.+|
T Consensus 24 i~~IA~~~gvs-r~TvyR~l~~~ 45 (45)
T PF02796_consen 24 IAEIAKQFGVS-RSTVYRYLNKN 45 (45)
T ss_dssp HHHHHHHTTS--HHHHHHHHCC-
T ss_pred HHHHHHHHCcC-HHHHHHHHhcC
Confidence 45677777888 77777776554
No 396
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=23.92 E-value=4.2e+02 Score=25.17 Aligned_cols=93 Identities=8% Similarity=0.035 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHc-CCCcEEEEeccc-------------------hHHHHHHHHhccCCCcceEEEeCCCCH---HHHHH
Q 020985 132 RKYFEKQFELAYA-TKLPMFLHMREA-------------------AADFCAIVERNKDRFTGGVTHSFTGSA---EDRDK 188 (319)
Q Consensus 132 ~~vf~~qlelA~~-~~~Pv~iH~r~a-------------------~~~~l~il~~~~~~~~~~i~H~f~g~~---~~~~~ 188 (319)
.+.+...++.|-+ ...++.+|+-.. .+.+++.|.+... ..+..=|.... +.++.
T Consensus 188 ~~~~v~~~n~~~~g~~~~v~~HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~v---d~~~lE~~~~r~~~~~l~~ 264 (339)
T PRK09121 188 NDWGVAALERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNI---DIISLECHNSRVPMDLLEL 264 (339)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccccccccccccccHHHHHHHHHhCCC---CEEEEEecCCCCCcHHHHh
Confidence 3455555555554 467788998522 2477777765532 23333333222 33444
Q ss_pred HHHCCCeEeecccccc-----Ch-----hhHHHHhcCCCCCEEEcCCCCCc
Q 020985 189 LLTFNMYIGINGCSLK-----TA-----ENLDVVRGIPIERMMIETDSPYC 229 (319)
Q Consensus 189 ~l~~g~y~s~sg~~~~-----~~-----~~~~~l~~ip~drlLlETD~P~~ 229 (319)
+ + +--+.++....+ +. +.+++++.+|++||.+.+||.+.
T Consensus 265 ~-~-~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~ 313 (339)
T PRK09121 265 I-R-GKKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCTNCGMA 313 (339)
T ss_pred c-c-cCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEEECCCCCCC
Confidence 4 2 323333221111 11 23478889999999999999983
No 397
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=23.79 E-value=7.6e+02 Score=24.87 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCC
Q 020985 30 SDIATVLSRAWSSGVDRIIVTG-GSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKG 108 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 108 (319)
.|.+++ .-.-+.||+.+-+-. -+++|-..+.++..+... -|-.-+.... ..+.++.|++.++. .++
T Consensus 176 KD~~dl-~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~------~~~~iiaKIE----~~eav~NldeIi~~--SDG 242 (477)
T COG0469 176 KDKEDL-KFGLEQGVDFVALSFVRNAEDVEEVREILAETGG------RDVKIIAKIE----NQEAVDNLDEIIEA--SDG 242 (477)
T ss_pred cCHHHH-HHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCC------CCceEEEeec----CHHHHhHHHHHHHh--cCc
Confidence 466564 444556999765533 257777777755544421 1111111110 11456667777663 245
Q ss_pred CEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 109 KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
=.+|-|-.|+... ...-.-.|+++ ++.|+++|+||++=|
T Consensus 243 IMVARGDLGVEip--~e~Vp~~QK~i----I~~~~~~gkpVItAT 281 (477)
T COG0469 243 IMVARGDLGVEIP--LEEVPIIQKRI----IRKARRAGKPVITAT 281 (477)
T ss_pred eEEEecccccccC--HHHhhHHHHHH----HHHHHHcCCceEEee
Confidence 6799999998853 11223467666 788999999999887
No 398
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.51 E-value=2.2e+02 Score=26.04 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=5.8
Q ss_pred HHHHHHHHHcCC
Q 020985 135 FEKQFELAYATK 146 (319)
Q Consensus 135 f~~qlelA~~~~ 146 (319)
+...++.+.+.+
T Consensus 140 ~~~~~~~~~~~g 151 (266)
T cd07944 140 LLELLELVNEIK 151 (266)
T ss_pred HHHHHHHHHhCC
Confidence 444455555544
No 399
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=23.47 E-value=4.9e+02 Score=22.52 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCcEEEEeccc-------hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHH
Q 020985 134 YFEKQFELAYATKLPMFLHMREA-------AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 134 vf~~qlelA~~~~~Pv~iH~r~a-------~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~ 191 (319)
.|+..|++++..++.+.|..... ...+++++++++.. .++++-|| +.+.++.+.+
T Consensus 84 tL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~-~~v~v~Sf--~~~~l~~~~~ 145 (220)
T cd08579 84 SLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIE-NQHQVHSL--DYRVIEKVKK 145 (220)
T ss_pred CHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCC-cCeEEEeC--CHHHHHHHHH
Confidence 47777888887788899888643 35677888877643 46788888 5666666654
No 400
>PRK06687 chlorohydrolase; Validated
Probab=23.45 E-value=6.7e+02 Score=24.12 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=35.0
Q ss_pred cEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCH------HHHHHHHHCCCeEeecc
Q 020985 148 PMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSA------EDRDKLLTFNMYIGING 200 (319)
Q Consensus 148 Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~------~~~~~~l~~g~y~s~sg 200 (319)
-++.|+....++-++++++.+ ..+.||-..+. .-++++++.|+-++++.
T Consensus 248 ~~~~H~~~~~~~~~~~la~~g----~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~v~lGt 302 (419)
T PRK06687 248 SVFAHGVELNEREIERLASSQ----VAIAHNPISNLKLASGIAPIIQLQKAGVAVGIAT 302 (419)
T ss_pred eEEEEEecCCHHHHHHHHHcC----CeEEECcHHhhhhccCCCcHHHHHHCCCeEEEeC
Confidence 367899988888889998864 23667643221 23588889999998864
No 401
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=23.30 E-value=2.3e+02 Score=25.30 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=38.9
Q ss_pred HHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCC------HHHHHHHHHCCCeEeecc
Q 020985 142 AYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGS------AEDRDKLLTFNMYIGING 200 (319)
Q Consensus 142 A~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~------~~~~~~~l~~g~y~s~sg 200 (319)
+.+.+..++.|+....++.++++++.+ ..+.||-..+ ..-++++++.|+-++++.
T Consensus 160 ~~~~~~~~i~H~~~l~~~~~~~la~~g----~~v~~~P~sn~~l~~g~~p~~~l~~~Gv~v~lGt 220 (263)
T cd01305 160 ALDLEPDLLVHGTHLTDEDLELVRENG----VPVVLCPRSNLYFGVGIPPVAELLKLGIKVLLGT 220 (263)
T ss_pred HHhCCCCEEEEcCCCCHHHHHHHHHcC----CcEEEChhhHHHhCCCCCCHHHHHHCCCcEEEEC
Confidence 333466678999998888999999865 2477774322 223678888898888864
No 402
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=23.26 E-value=3.4e+02 Score=23.08 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhc
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETD 67 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~ 67 (319)
.++-.++++++.|+.++++.+++-....+++++.+..
T Consensus 15 tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~ 51 (186)
T COG1751 15 TLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD 51 (186)
T ss_pred HHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC
Confidence 4566789999999999999988888888888877543
No 403
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=23.18 E-value=1.1e+02 Score=18.50 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHH
Q 020985 272 LEVVAGCKGINDIDQLSRTLYH 293 (319)
Q Consensus 272 ~~~iA~~~~is~~e~~~~~~~~ 293 (319)
-+.||+..|++ .|.+.+++.+
T Consensus 5 r~diA~~lG~t-~ETVSR~l~~ 25 (32)
T PF00325_consen 5 RQDIADYLGLT-RETVSRILKK 25 (32)
T ss_dssp HHHHHHHHTS--HHHHHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHHHH
Confidence 46788899999 9999988754
No 404
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=23.02 E-value=3.1e+02 Score=26.07 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHc---CCCcEEEE-eccchHHHHHHHHhccCCCcceEEEeCCC-CHHHHHHHHH--CCCeEeecc----
Q 020985 132 RKYFEKQFELAYA---TKLPMFLH-MREAAADFCAIVERNKDRFTGGVTHSFTG-SAEDRDKLLT--FNMYIGING---- 200 (319)
Q Consensus 132 ~~vf~~qlelA~~---~~~Pv~iH-~r~a~~~~l~il~~~~~~~~~~i~H~f~g-~~~~~~~~l~--~g~y~s~sg---- 200 (319)
.+.+...++++.. -+.=|.+| |+..+.++.+.+..+.. .++-+-++. ..+.+..+-. .+-.++++.
T Consensus 195 l~~~~~~~~~~~~~~~~d~~i~~HiCy~e~~~~~~~i~~ld~---dv~~~e~~~s~~~~~~~~~~~~~~~~Ig~Gv~d~~ 271 (330)
T COG0620 195 LEWAVEAINLAAAGVGADTQIHLHICYSEFNDIPDAIEALDA---DVIDIETSRSRMELLEVLEEVKYDKEIGLGVVDIH 271 (330)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEECCcccchhHHHhhcCC---cEEeeeccccccchhHHHHhccCCCeeecceEecC
Confidence 3445555555555 34556777 77767777777776632 233333333 3333333333 223333322
Q ss_pred --ccccChh----hHHHHhcCCCCCEEEcCCCCC
Q 020985 201 --CSLKTAE----NLDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 201 --~~~~~~~----~~~~l~~ip~drlLlETD~P~ 228 (319)
.+-...+ .+++++.+|.+++.+.+||-+
T Consensus 272 ~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl 305 (330)
T COG0620 272 SPKVESVEEIAARIRKALERVPPERLYVNPDCGL 305 (330)
T ss_pred CCCcCCHHHHHHHHHHHHHhCChheEEEcCCCCc
Confidence 2211122 246789999999999999976
No 405
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=22.76 E-value=6.6e+02 Score=23.76 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=65.1
Q ss_pred CEEEEEeecCCCCCC------CCCCHHHHHHHHHHHHHHHHcCCCcEEEEeccchHH----HHHHHHhccCCCcceEEEe
Q 020985 109 KVVAIGECGLDYDRL------HFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAAD----FCAIVERNKDRFTGGVTHS 178 (319)
Q Consensus 109 ~~~aIGEiGLD~~~~------~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~----~l~il~~~~~~~~~~i~H~ 178 (319)
..+-+|-|=.+.+.. .--+++.-+++.++|.+++.++|.|.++|......+ -++...+... ..+++-+
T Consensus 26 PtvL~GSIFY~~HkIV~D~~~GiFDk~~Ae~Lin~q~elsd~tGnp~~~qI~~~t~EA~~kYidfv~~i~d--~PfliDS 103 (314)
T TIGR01114 26 PTVLAGTIFYARHKIVEDEDKGIFDKAAAETLIKTQEELSDATGNPYVVQIFGETPEAIVRYIDWVADITD--APFLIDS 103 (314)
T ss_pred CceEEEEEeecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHhcccC--CCeEecC
Confidence 345566665443321 113467789999999999999999999999865443 3444444322 2456777
Q ss_pred CCCCHHHH--HHHHHCC-----CeEeeccccccChhhHHHHhcCCCC-CEEEcCC
Q 020985 179 FTGSAEDR--DKLLTFN-----MYIGINGCSLKTAENLDVVRGIPIE-RMMIETD 225 (319)
Q Consensus 179 f~g~~~~~--~~~l~~g-----~y~s~sg~~~~~~~~~~~l~~ip~d-rlLlETD 225 (319)
.++....+ +..-+.| +|-|++..+ .++-.++++.-.++ -|++-=|
T Consensus 104 ~~~~~r~aa~ky~~E~GladR~IYNSIn~s~--~~eEieaL~esdi~aaIiLaFn 156 (314)
T TIGR01114 104 TSGEARAAAAKYATEVGLADRAIYNSINASI--EEEEIQVLKESDLSAAIVLAFN 156 (314)
T ss_pred CcHHHHHHHhhhhhhhchHHHHHHhhcCccC--CHHHHHHHHhcCCCeEEEEecC
Confidence 55543222 2222233 688887642 23334666655433 3444444
No 406
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.69 E-value=7.6e+02 Score=25.54 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCCEEEEe--CCCHHhHHHHHHHHHhcCC
Q 020985 32 IATVLSRAWSSGVDRIIVT--GGSLEESKEALAIAETDGR 69 (319)
Q Consensus 32 ~~~vl~~~~~~Gv~~~v~~--~~~~~~~~~~~~l~~~~~~ 69 (319)
.+..++++.++|++.+-+. ..+.+.....++.+++...
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~ 137 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGA 137 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCC
Confidence 4566888999999865443 2455666667788877753
No 407
>PLN02762 pyruvate kinase complex alpha subunit
Probab=22.55 E-value=8.2e+02 Score=24.83 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTG-GSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
|.++ ++-+-+.||+.+.+-- -+.+|...+.++..+.. .|-|+.-+.... ..+.++.|.+.++. .+.-
T Consensus 205 D~~d-i~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g-----~~~~~~IiAKIE----~~~av~nl~eIi~~--sDgi 272 (509)
T PLN02762 205 DWLD-IDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARS-----RDSDIGVIAKIE----SLDSLKNLEEIIRA--SDGA 272 (509)
T ss_pred HHHH-HHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcC-----CCCCceEEEEeC----CHHHHHHHHHHHHh--cCEE
Confidence 4444 4556788999654432 25777777777765531 111333333221 11456677777764 3555
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
.+|=|-.|+.... . .-...|+++ +..|.+.++||++=|
T Consensus 273 MVARGDLGvEip~-e-~vp~~QK~I----I~~c~~~gKPVIvAT 310 (509)
T PLN02762 273 MVARGDLGAQIPL-E-QVPSVQEKI----VRLCRQLNKPVIVAS 310 (509)
T ss_pred EEecCccccccCH-H-HhHHHHHHH----HHHHHHhCCCEEEEC
Confidence 7888999988531 1 123456655 789999999999866
No 408
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=22.48 E-value=1.1e+02 Score=30.91 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEec------------------cchHHHHHHHHhcc
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHMR------------------EAAADFCAIVERNK 168 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~r------------------~a~~~~l~il~~~~ 168 (319)
+.|.+.|+.+|+.+.+-.+-|++|.. ....+++++|++++
T Consensus 322 eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~yp 379 (496)
T TIGR03767 322 QTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHP 379 (496)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCC
Confidence 78999999999977554455677863 01257888998763
No 409
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=22.41 E-value=84 Score=29.00 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=24.9
Q ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEec
Q 020985 115 ECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 115 EiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
+.|++|.-+- . -+..+-+.+.|+.+++++.||+||..
T Consensus 233 ~LG~~Y~GPi-D--GHdl~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 233 ELGFDYIGPI-D--GHDLEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp HCT-EEEEEE-E--TT-HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HcCCeEEecc-C--CCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4577764210 0 13456688889999999999999974
No 410
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.39 E-value=6.3e+02 Score=23.45 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCC
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGG 52 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~ 52 (319)
.+.+. +.++-++|.+.++.-++
T Consensus 85 ~~~e~-i~~Ai~~GftSVM~DgS 106 (283)
T PRK07998 85 KTFED-VKQAVRAGFTSVMIDGA 106 (283)
T ss_pred CCHHH-HHHHHHcCCCEEEEeCC
Confidence 46644 45566789988877654
No 411
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=22.30 E-value=3.6e+02 Score=25.91 Aligned_cols=21 Identities=10% Similarity=0.442 Sum_probs=18.8
Q ss_pred HHHHhcCCCCCEEEcCCCCCc
Q 020985 209 LDVVRGIPIERMMIETDSPYC 229 (319)
Q Consensus 209 ~~~l~~ip~drlLlETD~P~~ 229 (319)
+++++.+|++||.+.+||.+.
T Consensus 320 ~~a~~~v~~~~l~lspdCGf~ 340 (368)
T PRK06520 320 AEAAKFVPLEQLCLSPQCGFA 340 (368)
T ss_pred HHHHHhCCHHHEeeCcccCCC
Confidence 478899999999999999983
No 412
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=22.12 E-value=4.2e+02 Score=25.22 Aligned_cols=152 Identities=12% Similarity=0.097 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEeccchH--HHHHHHHhccCCC-cceEEEeCCCCHHHHHHHHHCCCeEeecccccc
Q 020985 128 SEIQRKYFEKQFELAYATKLPMFLHMREAAA--DFCAIVERNKDRF-TGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLK 204 (319)
Q Consensus 128 ~~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~--~~l~il~~~~~~~-~~~i~H~f~g~~~~~~~~l~~g~y~s~sg~~~~ 204 (319)
.........+.+++|+++++|+.++-....+ +++...++.+... .-+..|+..-+.+.+. ..|.++-+++. ++
T Consensus 167 ~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~---~~~~~~k~~Pp-lr 242 (374)
T cd01317 167 PEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALE---SYDTNAKVNPP-LR 242 (374)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHh---ccCCceEEcCC-CC
Confidence 3445567789999999999999984443322 2333333333221 1234477655655543 23665666554 34
Q ss_pred Chhh----HHHHhcCCCCCEEEcCCCCCccccccccccccccccCCCcccccccccccCCCCCccchHHHHHHHHHHhcC
Q 020985 205 TAEN----LDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKG 280 (319)
Q Consensus 205 ~~~~----~~~l~~ip~drlLlETD~P~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~~~~~n~P~~l~~v~~~iA~~~~ 280 (319)
+++. .++++. -.-..+.||........ + . . .|.. .+..-.+.-..+...++.+.+...
T Consensus 243 ~~~~~~~l~~~~~~--G~i~~igsDh~p~~~~~-----k-----~----~-~~~~-~~~Gi~g~e~~l~~~~~~~~~~~~ 304 (374)
T cd01317 243 SEEDREALIEALKD--GTIDAIASDHAPHTDEE-----K-----D----L-PFAE-APPGIIGLETALPLLWTLLVKGGL 304 (374)
T ss_pred CHHHHHHHHHHHhc--CCceEEEcCCCCCCHHH-----c-----c----C-CHhh-CCCcHhHHHHHHHHHHHHHHHcCC
Confidence 4333 344443 23458999986421000 0 0 0 0000 000001112245555555555556
Q ss_pred CChHHHHHHHHHHHHHHhcCCC
Q 020985 281 INDIDQLSRTLYHNTCRVFFPQ 302 (319)
Q Consensus 281 is~~e~~~~~~~~N~~rlf~~~ 302 (319)
++ .+++.+.+..|..++|++.
T Consensus 305 ~~-~~~~~~~~t~npA~~lgl~ 325 (374)
T cd01317 305 LT-LPDLIRALSTNPAKILGLP 325 (374)
T ss_pred CC-HHHHHHHHHHHHHHHhCCC
Confidence 89 9999999999999999985
No 413
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=22.03 E-value=1.7e+02 Score=20.53 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHhcCC-ChHHHHHHHHHH
Q 020985 265 PCLVRQVLEVVAGCKGI-NDIDQLSRTLYH 293 (319)
Q Consensus 265 P~~l~~v~~~iA~~~~i-s~~e~~~~~~~~ 293 (319)
|...+.+++.|-++-|- | .+++...+.+
T Consensus 2 P~~~rk~VQ~iKEiv~~hs-e~eIya~L~e 30 (60)
T PF06972_consen 2 PAASRKTVQSIKEIVGCHS-EEEIYAMLKE 30 (60)
T ss_pred ChHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 56788999999998887 8 8888888764
No 414
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=21.94 E-value=1.1e+02 Score=30.21 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCC
Q 020985 280 GINDIDQLSRTLYHNTCRVFFPQD 303 (319)
Q Consensus 280 ~is~~e~~~~~~~~N~~rlf~~~~ 303 (319)
..+ ..+++.+++.|..+++|++.
T Consensus 437 E~t-~~eia~~TRa~~ak~lgl~e 459 (575)
T COG1229 437 ELT-LYELAIMTRANPAKVLGLSE 459 (575)
T ss_pred ccc-HHHHHHHHhcChhhhccccc
Confidence 455 88999999999999999865
No 415
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=21.90 E-value=4.9e+02 Score=21.99 Aligned_cols=99 Identities=7% Similarity=0.023 Sum_probs=53.1
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHc--CCCcEEEEec-cch-HHHHHHHHhccCCCcceEEEeCCCC---
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYA--TKLPMFLHMR-EAA-ADFCAIVERNKDRFTGGVTHSFTGS--- 182 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~--~~~Pv~iH~r-~a~-~~~l~il~~~~~~~~~~i~H~f~g~--- 182 (319)
+.+| |+|+.+.. . ...+. ++..++ .++|+.+|.- ... ...++.+.+.+. ..+++|..++.
T Consensus 26 i~~i-eig~~~~~-~-----~g~~~----i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGa--d~i~~h~~~~~~~~ 92 (202)
T cd04726 26 VDII-EAGTPLIK-S-----EGMEA----VRALREAFPDKIIVADLKTADAGALEAEMAFKAGA--DIVTVLGAAPLSTI 92 (202)
T ss_pred CCEE-EcCCHHHH-H-----hCHHH----HHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCC--CEEEEEeeCCHHHH
Confidence 5567 99987632 1 11122 222222 3899999953 222 234565666664 35678998753
Q ss_pred HHHHHHHHHCCCeEeec--cccccChhhHHHHhcCCCCCEEEc
Q 020985 183 AEDRDKLLTFNMYIGIN--GCSLKTAENLDVVRGIPIERMMIE 223 (319)
Q Consensus 183 ~~~~~~~l~~g~y~s~s--g~~~~~~~~~~~l~~ip~drlLlE 223 (319)
.+.++.+.+.|+-+.+. +. ....+..+ +...+.|-+++.
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~-~t~~e~~~-~~~~~~d~v~~~ 133 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGV-EDPEKRAK-LLKLGVDIVILH 133 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCC-CCHHHHHH-HHHCCCCEEEEc
Confidence 23344444568877753 22 11223334 444577887774
No 416
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=21.73 E-value=67 Score=24.72 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCCcEEEEec
Q 020985 133 KYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r 154 (319)
.-..+..++|+++|+|+++|+-
T Consensus 33 t~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 33 TEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHhCCCEEecCC
Confidence 3467788999999999999996
No 417
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.66 E-value=3.2e+02 Score=26.23 Aligned_cols=60 Identities=10% Similarity=-0.008 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeccc---------------hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHC
Q 020985 131 QRKYFEKQFELAYATKLPMFLHMREA---------------AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 131 Q~~vf~~qlelA~~~~~Pv~iH~r~a---------------~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~ 192 (319)
+..-|++.+++++.+++.+.|=+... ...+++++++++....++++.|| +++.++.+.+.
T Consensus 149 ~IPTL~Evl~lv~~~~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSF--d~~~L~~~~~~ 223 (356)
T cd08560 149 TLMTHKESIALFKSLGVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSF--NLDDIFYWIKN 223 (356)
T ss_pred CCCCHHHHHHHHHhcCceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECC--CHHHHHHHHHh
Confidence 34568888899988887777766421 23677888887643247899999 56777766553
No 418
>PRK06739 pyruvate kinase; Validated
Probab=21.63 E-value=7.3e+02 Score=23.87 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHcCCCEEEEeC-CCHHhHHHHHHHHHhcCCeEEeeecCCCCcccccccCCCHHHHHHHHHHHHhccCCCC
Q 020985 31 DIATVLSRAWSSGVDRIIVTG-GSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGK 109 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~-~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 109 (319)
|.++ ++-+.+.|++.+.+-- -+.+|...+.++.+++.. -++.-+.... ..+.++.|.+.++. .+.-
T Consensus 167 D~~d-i~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~------~~~~IiaKIE----~~~av~nl~eI~~~--sDgi 233 (352)
T PRK06739 167 DKKD-IQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKE------TSPNLIAKIE----TMEAIENFQDICKE--ADGI 233 (352)
T ss_pred HHHH-HHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCC------CCCcEEEEEC----CHHHHHHHHHHHHh--cCEE
Confidence 4444 5667788998664432 257787777777765421 0111111110 11456677777764 3455
Q ss_pred EEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEe
Q 020985 110 VVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM 153 (319)
Q Consensus 110 ~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~ 153 (319)
.+|=|-.|+.... . .-...|+++ +..|+++++||++=|
T Consensus 234 mVARGDLgve~~~-e-~vp~~Qk~I----i~~c~~~gkPvIvAT 271 (352)
T PRK06739 234 MIARGDLGVELPY-Q-FIPLLQKMM----IQECNRTNTYVITAT 271 (352)
T ss_pred EEECcccccccCH-H-HHHHHHHHH----HHHHHHhCCCEEEEc
Confidence 7888999988531 1 123456655 789999999999877
No 419
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=21.52 E-value=1.5e+02 Score=26.98 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=0.0
Q ss_pred CHHHHHHHHHCCCeEeecccc-ccChhhH-HHHhcCCCCCEEEcCCC
Q 020985 182 SAEDRDKLLTFNMYIGINGCS-LKTAENL-DVVRGIPIERMMIETDS 226 (319)
Q Consensus 182 ~~~~~~~~l~~g~y~s~sg~~-~~~~~~~-~~l~~ip~drlLlETD~ 226 (319)
+.+.++++++.|+-.=+-|.. .++++.. ++++.+| +||++.-|+
T Consensus 86 s~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g-~rivv~lD~ 131 (241)
T COG0106 86 SLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYG-DRIVVALDA 131 (241)
T ss_pred CHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcC-CcEEEEEEc
No 420
>PRK12569 hypothetical protein; Provisional
Probab=21.48 E-value=2.3e+02 Score=25.88 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=43.5
Q ss_pred cEEeeccCCCCccccccccCCcCCCCC--HHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecCCCCcc
Q 020985 5 RLIDIAVNFTDGMFKGIYHGKQCHASD--IATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCK 82 (319)
Q Consensus 5 ~iiD~H~Hl~~~~~~~~~~~~~~h~~~--~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~ 82 (319)
|-||.-|-++. .| |.|.- .+ -++++.-...++|- |=-=+.+|..-.+++++++++. ..+|-||.|.+
T Consensus 3 m~idLN~DlGE-sf-G~~~~-----g~~~D~~lmp~ItsaNIA-CG~HAGDp~~M~~tv~lA~~~~---V~IGAHPsyPD 71 (245)
T PRK12569 3 MSIDLNSDMGE-GF-GPWRI-----GDGVDEALMPLISSANIA-TGFHAGDPNIMRRTVELAKAHG---VGIGAHPGFRD 71 (245)
T ss_pred ceEEeccccCC-CC-CCcCC-----CCccHHHHHHHhhhHHHh-ccccCCCHHHHHHHHHHHHHcC---CEeccCCCCCc
Confidence 46888888887 23 21211 23 34555554445442 1111368999999999999885 57999999976
Q ss_pred c
Q 020985 83 E 83 (319)
Q Consensus 83 ~ 83 (319)
.
T Consensus 72 ~ 72 (245)
T PRK12569 72 L 72 (245)
T ss_pred C
Confidence 4
No 421
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.47 E-value=4.4e+02 Score=23.35 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCcEEEEeccc---------hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHC
Q 020985 135 FEKQFELAYATKLPMFLHMREA---------AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 135 f~~qlelA~~~~~Pv~iH~r~a---------~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~ 192 (319)
|+..|++++..++.+.|-.... ...+++++++++.. .++++.+| +.+.++++.+.
T Consensus 84 L~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~i~~~~~~-~~v~~~Sf--~~~~l~~~~~~ 147 (235)
T cd08565 84 LEEVLALFAPSGLELHVEIKTDADGTPYPGAAALAAATLRRHGLL-ERSVLTSF--DPAVLTEVRKH 147 (235)
T ss_pred HHHHHHHhhccCcEEEEEECCCCCCCccHHHHHHHHHHHHhCCCc-CCEEEEEC--CHHHHHHHHhC
Confidence 6677777777777788777532 24577888877643 47899999 45566666553
No 422
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=21.41 E-value=5.9e+02 Score=23.89 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcC
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDG 68 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~ 68 (319)
....+|+++++.|+-.|-+........+.-.++.++|.
T Consensus 45 ~VsRlL~~Ar~~GiV~I~I~~~~~~~~~Le~~L~~~fg 82 (318)
T PRK15418 45 KVSRLLEKGRQSGIIRVQINSRFEGCLELENALRQHFS 82 (318)
T ss_pred HHHHHHHHHHHcCcEEEEEeCCCccHHHHHHHHHHHhC
Confidence 45678999999998887765432233333345666664
No 423
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=21.11 E-value=75 Score=22.64 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=14.7
Q ss_pred HHHHhcCCCCCEEEcCCCCC
Q 020985 209 LDVVRGIPIERMMIETDSPY 228 (319)
Q Consensus 209 ~~~l~~ip~drlLlETD~P~ 228 (319)
.+.+...+..+|.+|||+-.
T Consensus 13 l~~a~~~g~~~i~v~sDs~~ 32 (87)
T PF13456_consen 13 LQLAWELGIRKIIVESDSQL 32 (87)
T ss_dssp HHHHHCCT-SCEEEEES-HH
T ss_pred HHHHHHCCCCEEEEEecCcc
Confidence 36677889999999999953
No 424
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.97 E-value=2.3e+02 Score=21.82 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=4.9
Q ss_pred EeeecCCC
Q 020985 72 CTVGVHPT 79 (319)
Q Consensus 72 ~~~GiHP~ 79 (319)
-+.|.|=.
T Consensus 66 L~~G~H~~ 73 (103)
T cd03413 66 LVAGDHAH 73 (103)
T ss_pred heecccch
Confidence 36677754
No 425
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.88 E-value=4e+02 Score=25.86 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=18.5
Q ss_pred cCCChHHHHHHHHHHHHHHhcC
Q 020985 279 KGINDIDQLSRTLYHNTCRVFF 300 (319)
Q Consensus 279 ~~is~~e~~~~~~~~N~~rlf~ 300 (319)
++++ .+|+..+...|+.|+|.
T Consensus 369 r~~~-~~E~~~l~g~N~LRV~~ 389 (419)
T KOG4127|consen 369 RGWW-EEELIGLAGGNLLRVFR 389 (419)
T ss_pred cCCc-HHHHHHHhcchHHHHHH
Confidence 5788 88888899999999986
No 426
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=20.86 E-value=1.2e+02 Score=25.04 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=18.2
Q ss_pred HHcCCCcEEEEeccchHHHHHHHHhccC---CC-cceEEEeCCCC
Q 020985 142 AYATKLPMFLHMREAAADFCAIVERNKD---RF-TGGVTHSFTGS 182 (319)
Q Consensus 142 A~~~~~Pv~iH~r~a~~~~l~il~~~~~---~~-~~~i~H~f~g~ 182 (319)
..-.|+|++.|.......=.+.++.++. +. ..+|++|-+|.
T Consensus 56 ~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~ 100 (136)
T KOG1530|consen 56 PASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASGV 100 (136)
T ss_pred cceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccCc
Confidence 3445666666654332222233333321 11 14566666664
No 427
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=20.77 E-value=4.4e+02 Score=23.64 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=17.6
Q ss_pred CCHHhHHHHHHHHHhcCCeEEeeecCCCCccc
Q 020985 52 GSLEESKEALAIAETDGRLFCTVGVHPTRCKE 83 (319)
Q Consensus 52 ~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~ 83 (319)
++++.++.+.++..++ ++=.++++=|.+.+.
T Consensus 13 ~~~~~l~~i~d~l~~~-~ipf~v~vIP~~~d~ 43 (243)
T PF10096_consen 13 SDLEKLKEIADYLYKY-GIPFSVAVIPVYVDP 43 (243)
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEEEEecccCC
Confidence 4556666666655443 233567777766554
No 428
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=20.67 E-value=3.2e+02 Score=24.64 Aligned_cols=141 Identities=13% Similarity=0.148 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeecC-CCCcccccccCCCHHHHHHHHHHHHhccCCC
Q 020985 30 SDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVH-PTRCKEFEESGDPEKHFQALLSLAKEGIEKG 108 (319)
Q Consensus 30 ~~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~GiH-P~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 108 (319)
.+++++++++.+.|++.+++........ .+.......+...++-+ |........ ..+..+++.++.. -
T Consensus 36 ~~~~~~~~~a~~~~~~~v~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~v~~al~~G---a 104 (258)
T TIGR01949 36 VDIRKTVNEVAEGGADAVLLHKGIVRRG---HRGYGKDVGLIIHLSASTSLSPDPNDK-----RIVTTVEDAIRMG---A 104 (258)
T ss_pred CCHHHHHHHHHhcCCCEEEeCcchhhhc---ccccCCCCcEEEEEcCCCCCCCCCCcc-----eeeeeHHHHHHCC---C
Confidence 6888999999999998776643222221 11111111233333112 333222110 1223455555421 0
Q ss_pred CEEEEEe-ecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEEEec-------cchHHH----HHHHHhccCCCcceEE
Q 020985 109 KVVAIGE-CGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMR-------EAAADF----CAIVERNKDRFTGGVT 176 (319)
Q Consensus 109 ~~~aIGE-iGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~iH~r-------~a~~~~----l~il~~~~~~~~~~i~ 176 (319)
..+.+-+ +| . .....+.+...+..++|.++|.|+++... ....+. .++..+.+.+ +|-
T Consensus 105 ~~v~~~~~~g------~-~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GAD---yik 174 (258)
T TIGR01949 105 DAVSIHVNVG------S-DTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGAD---IVK 174 (258)
T ss_pred CEEEEEEecC------C-chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCC---EEe
Confidence 1111111 11 1 12234557788889999999999998532 111111 1222233322 233
Q ss_pred EeCCCCHHHHHHHHH
Q 020985 177 HSFTGSAEDRDKLLT 191 (319)
Q Consensus 177 H~f~g~~~~~~~~l~ 191 (319)
=.|.++.+.++++.+
T Consensus 175 t~~~~~~~~l~~~~~ 189 (258)
T TIGR01949 175 TPYTGDIDSFRDVVK 189 (258)
T ss_pred ccCCCCHHHHHHHHH
Confidence 346677788888776
No 429
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=20.65 E-value=2.1e+02 Score=25.14 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=38.3
Q ss_pred ccCCcCCCCCHHHHHHHHHHcCCCEEEEeCCC---HHhHHHHHHHHHhcC---CeEEeeecCCCCcc
Q 020985 22 YHGKQCHASDIATVLSRAWSSGVDRIIVTGGS---LEESKEALAIAETDG---RLFCTVGVHPTRCK 82 (319)
Q Consensus 22 ~~~~~~h~~~~~~vl~~~~~~Gv~~~v~~~~~---~~~~~~~~~l~~~~~---~i~~~~GiHP~~~~ 82 (319)
+|+..-...+..+.++.+.+.|++++++-|.. .+..+.+.++.+... .+.++-|+-|.++.
T Consensus 119 FHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~ 185 (201)
T PF03932_consen 119 FHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGGVRAENVP 185 (201)
T ss_dssp E-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHH
T ss_pred EeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHH
Confidence 33333334678888999999999999887643 334555555555442 37789999888764
No 430
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.61 E-value=75 Score=33.47 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=27.6
Q ss_pred EeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCC--CcEEEEec
Q 020985 114 GECGLDYDRLHFCPSEIQRKYFEKQFELAYATK--LPMFLHMR 154 (319)
Q Consensus 114 GEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~--~Pv~iH~r 154 (319)
-|.|++|.-+- .-+..+-+...|+.+++++ .||+||..
T Consensus 323 e~lG~~Y~Gpv---DGHdi~~Li~~l~~~k~~~~~~PvlvHv~ 362 (701)
T PLN02225 323 EELGLYYIGPV---DGHNIEDLVCVLREVSSLDSMGPVLVHVI 362 (701)
T ss_pred HHcCCeEECcc---CCCCHHHHHHHHHHHHcCCCCCCEEEEEE
Confidence 37899985321 1134566888899999997 99999984
No 431
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=20.56 E-value=4.3e+02 Score=23.82 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCcEEEEeccc----hHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHC
Q 020985 133 KYFEKQFELAYATKLPMFLHMREA----AADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTF 192 (319)
Q Consensus 133 ~vf~~qlelA~~~~~Pv~iH~r~a----~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~ 192 (319)
.-|+..|+++++.++.+.|..... .+.+++++++++....++++-+| +.+.++.+-+.
T Consensus 89 ptL~evl~~~~~~~~~l~iEiK~~~~~~~~~v~~~l~~~~~~~~~v~v~SF--~~~~l~~~~~~ 150 (258)
T cd08573 89 PTLEEAVKECLENNLRMIFDVKSNSSKLVDALKNLFKKYPGLYDKAIVCSF--NPIVIYKVRKA 150 (258)
T ss_pred CCHHHHHHHHHhcCCEEEEEeCCCcHHHHHHHHHHHHHCCCccCCEEEEEC--CHHHHHHHHHh
Confidence 347888888888888899988643 24667788877612347889999 46666666553
No 432
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.52 E-value=7.4e+02 Score=23.53 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHcCCCcEEEEeccchHHHHHHHHhccCCCcceEEEeCCCCHHHHHHHHHCCCeEee
Q 020985 129 EIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGI 198 (319)
Q Consensus 129 ~~Q~~vf~~qlelA~~~~~Pv~iH~r~a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~l~~g~y~s~ 198 (319)
+.|...+.+..+..++.|+-+++=. +++ .. +. +..+++..+++. ..+..+++.|+-+-.
T Consensus 201 ~l~~~f~~~~~~~v~~~G~~~i~W~-----d~~---~~-~l-~~~~iv~~W~~~-~~~~~~~~~G~~vI~ 259 (357)
T cd06563 201 ELQSYFIKRVEKILASKGKKMIGWD-----EIL---EG-GL-PPNATVMSWRGE-DGGIKAAKQGYDVIM 259 (357)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEee-----ccc---cc-CC-CCCcEEEECCCc-hHHHHHHHCCCCEEE
Confidence 3455667777888888887766533 221 11 11 234566555544 667888888864433
No 433
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=20.52 E-value=1.5e+02 Score=19.03 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHH
Q 020985 270 QVLEVVAGCKGINDIDQLSRTLYHN 294 (319)
Q Consensus 270 ~v~~~iA~~~~is~~e~~~~~~~~N 294 (319)
..+..||+..|.+ ...|.+.+.+|
T Consensus 21 ~s~~~IA~~lg~s-~sTV~relkR~ 44 (44)
T PF13936_consen 21 MSIREIAKRLGRS-RSTVSRELKRN 44 (44)
T ss_dssp --HHHHHHHTT---HHHHHHHHHHH
T ss_pred CCHHHHHHHHCcC-cHHHHHHHhcC
Confidence 4466788888999 88888888776
No 434
>PRK08445 hypothetical protein; Provisional
Probab=20.45 E-value=1.2e+02 Score=28.96 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeC
Q 020985 31 DIATVLSRAWSSGVDRIIVTG 51 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~ 51 (319)
++.+.+++++..|+..+++.+
T Consensus 77 eI~~~~~~a~~~g~~~i~~~g 97 (348)
T PRK08445 77 EIDKKIEELLAIGGTQILFQG 97 (348)
T ss_pred HHHHHHHHHHHcCCCEEEEec
Confidence 344556677888999888876
No 435
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=20.43 E-value=7.6e+02 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCcEEEEeccc
Q 020985 134 YFEKQFELAYATKLPMFLHMREA 156 (319)
Q Consensus 134 vf~~qlelA~~~~~Pv~iH~r~a 156 (319)
+......+|++...||.||.=.+
T Consensus 87 ~~~~v~~~Ae~a~VPValHLDHg 109 (357)
T TIGR01520 87 GAHHVHSIAEHYGVPVVLHTDHC 109 (357)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC
Confidence 34444567778899999998554
No 436
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=20.29 E-value=5.7e+02 Score=25.58 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEec
Q 020985 130 IQRKYFEKQFELAYATKLPMFLHMR 154 (319)
Q Consensus 130 ~Q~~vf~~qlelA~~~~~Pv~iH~r 154 (319)
.-.+..++..+++++++.+++||.+
T Consensus 335 ~~~~~a~~l~~~~~~~~~~liind~ 359 (502)
T PLN02898 335 EFIEEAKACLAICRSYGVPLLINDR 359 (502)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEcCh
Confidence 3345566667777778888888765
No 437
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=20.26 E-value=72 Score=28.02 Aligned_cols=44 Identities=36% Similarity=0.546 Sum_probs=32.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhcC---------CCCCCcccchhhccccCCC
Q 020985 272 LEVVAGCKGINDIDQLSRTLYHNTCRVFF---------PQDLDSTADALLAGRRNTP 319 (319)
Q Consensus 272 ~~~iA~~~~is~~e~~~~~~~~N~~rlf~---------~~~~~~~~~~~~~~~~~~~ 319 (319)
++.+|+..|+| .+++.++..+..-+++. +.++|. .|-.-|+++|
T Consensus 103 L~~vA~~~gLs-~~evi~~Hs~~~y~V~~iGF~PGf~YL~~ld~---~l~~PR~~~P 155 (201)
T smart00796 103 LEFVARHNGLS-VDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDP---RLATPRRSTP 155 (201)
T ss_pred HHHHHHHhCcC-HHHHHHHHhCCCeEEEEEeccCCCchhcCCCc---cccCCCCCCC
Confidence 66777888999 99999998887666442 244544 4778888887
No 438
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=20.19 E-value=9.7e+02 Score=24.73 Aligned_cols=139 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEEeC----------CCHHhHHHHHHHHHhcCC-eEEee--ecCCCCcccccccCCCHHHHHHHHHH
Q 020985 34 TVLSRAWSSGVDRIIVTG----------GSLEESKEALAIAETDGR-LFCTV--GVHPTRCKEFEESGDPEKHFQALLSL 100 (319)
Q Consensus 34 ~vl~~~~~~Gv~~~v~~~----------~~~~~~~~~~~l~~~~~~-i~~~~--GiHP~~~~~~~~~~~~~~~l~~l~~~ 100 (319)
.+++.+.++|+..+=+.| .+.+.|+.+..+.+..|+ -+.++ |....-...+.+ +.+++..+.
T Consensus 25 ~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypd-----dvv~~~v~~ 99 (582)
T TIGR01108 25 PIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYAD-----DVVERFVKK 99 (582)
T ss_pred HHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCch-----hhHHHHHHH
Q ss_pred HHhccCCCCEEEEEeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcEEE---------EeccchHHHHHHHHhccCCC
Q 020985 101 AKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFL---------HMREAAADFCAIVERNKDRF 171 (319)
Q Consensus 101 l~~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vf~~qlelA~~~~~Pv~i---------H~r~a~~~~l~il~~~~~~~ 171 (319)
.. +.|+|..+.....-+. +-++..++.|++.|+-|.. |+.+-..++++-+.+.+...
T Consensus 100 a~------------~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~ 165 (582)
T TIGR01108 100 AV------------ENGMDVFRIFDALNDP--RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDS 165 (582)
T ss_pred HH------------HCCCCEEEEEEecCcH--HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE
Q ss_pred cceEEEeCCCCHHHHHHHHH
Q 020985 172 TGGVTHSFTGSAEDRDKLLT 191 (319)
Q Consensus 172 ~~~i~H~f~g~~~~~~~~l~ 191 (319)
..+.-..-...+..+.++++
T Consensus 166 I~i~Dt~G~~~P~~v~~lv~ 185 (582)
T TIGR01108 166 ICIKDMAGILTPKAAYELVS 185 (582)
T ss_pred EEECCCCCCcCHHHHHHHHH
No 439
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.12 E-value=2.9e+02 Score=24.32 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHhHHHHHHHHHhcCCeEEeeec
Q 020985 31 DIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGV 76 (319)
Q Consensus 31 ~~~~vl~~~~~~Gv~~~v~~~~~~~~~~~~~~l~~~~~~i~~~~Gi 76 (319)
+...+++.+.+.|++.+=+.-+++.-.+.+.++.+++|++..++|-
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGT 66 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGT 66 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4456778888899986555545566566666777788886655553
Done!