RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020985
(319 letters)
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 418 bits (1077), Expect = e-148
Identities = 152/303 (50%), Positives = 217/303 (71%), Gaps = 6/303 (1%)
Query: 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAI 63
++ IDI +N TD MF+GIY G Q H D+ V+ RA GV + ++TGG+L++SK+AL +
Sbjct: 1 MKFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHL 60
Query: 64 AETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRL 123
A+T+G F TVG HPTRC EFE++ +P+ + + LL+LA+ KGKVVAIGECGLD+DRL
Sbjct: 61 AQTNGMFFSTVGCHPTRCGEFEKN-NPDLYLKELLNLAENN--KGKVVAIGECGLDFDRL 117
Query: 124 HFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSA 183
FCP + Q KYFEKQFEL+ TKLPMFLH R + A+F I +RN+DR GGV HSF G+
Sbjct: 118 QFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDRCVGGVVHSFDGTK 177
Query: 184 EDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKS 243
E L+ ++YIG NGCSLKT NL+V++ IP E++MIETD+P+C +K+ HAG ++++
Sbjct: 178 EAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRT 237
Query: 244 TWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFFPQD 303
+P K+K++ +K RNEPC + Q+LE+++ + D +L+ TLY+NT +VFFP
Sbjct: 238 AFP--TKKKWESGHCLKDRNEPCHIIQILEIMSAVRDE-DPLELANTLYNNTIKVFFPVI 294
Query: 304 LDS 306
++
Sbjct: 295 AEN 297
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 401 bits (1033), Expect = e-141
Identities = 112/306 (36%), Positives = 161/306 (52%), Gaps = 13/306 (4%)
Query: 3 TIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALA 62
+ IDI N TD + G YHGK H DI VL RA +G+ II+T G L + K+A+
Sbjct: 25 AQQFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIE 84
Query: 63 IAE-----TDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECG 117
I T+ +L T+GVHPTR E E + LL L ++ KVVAIGE G
Sbjct: 85 IINKYQNLTNIKLVTTIGVHPTRTNEL----KQEGYLDELLLLCEKN--IDKVVAIGEIG 138
Query: 118 LDYDRLHFCPSEIQRKYFEKQFELAY-ATKLPMFLHMREAAADFCAIVERNKDRFTGGVT 176
LDY+RL F E Q + L LP F H R++ +D C + + GV
Sbjct: 139 LDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGCKGVV 198
Query: 177 HSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHA 236
H F G+ E+ +++L IG+ G SL++ E L+V++ IPIER+ IETD PYC IK A
Sbjct: 199 HCFDGTEEEMNQILNEGWDIGVTGNSLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSA 258
Query: 237 GISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC 296
G ++K K EKY ++ V+ RNEP + + +++ K I + + +Y N+
Sbjct: 259 GFKYLKEKDFGVKVEKYQRNKYVQRRNEPSNIIDIAIIMSSIKHI-SLFEFVNKVYSNSM 317
Query: 297 RVFFPQ 302
++FP
Sbjct: 318 NMYFPT 323
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 332 bits (853), Expect = e-113
Identities = 125/385 (32%), Positives = 181/385 (47%), Gaps = 87/385 (22%)
Query: 1 MATIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEA 60
+ ++ DI +N TD MF GIY+GKQ H +D +L RA V +VTG S+ ES+ A
Sbjct: 9 DSPLKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSA 68
Query: 61 LAIAET-----DGRLFCTVGVHPTRCKEFEESG--------------------------- 88
+ + + +L+ T+GVHP EF ++
Sbjct: 69 IELVSSVKDLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVI 128
Query: 89 ----DPEKHFQALLSLAKEGIEKG--KVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELA 142
+ + L L + + +IGE GLDYDR H+ E+Q+ +FE+Q +++
Sbjct: 129 SNPSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKVFFEEQLKIS 188
Query: 143 YA----TKLPMFLHMREAAADFCAIVERNKDRFT-------------------------- 172
+ P+FLHMR A DF I+ER FT
Sbjct: 189 CLNDKLSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDR 248
Query: 173 GGVTHSFTGSAEDRDKLLT--FNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCE 230
V HSFTGSA D KLL N++IG+NGCSL+T ENL VV+ IP ER+++ETD+P+CE
Sbjct: 249 KLVVHSFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCE 308
Query: 231 IKNAHAGISFVKST----------------WPSKKKEKYDQDSLVKGRNEPCLVRQVLEV 274
IK HA ++ K ++ +VKGRNEPC + QV V
Sbjct: 309 IKRTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNMEQVAIV 368
Query: 275 VAGCKGINDIDQLSRTLYHNTCRVF 299
V+ K + D+ L T + TC++F
Sbjct: 369 VSEVKDV-DLATLIDTTWKTTCKIF 392
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 254 bits (651), Expect = 4e-84
Identities = 95/303 (31%), Positives = 141/303 (46%), Gaps = 48/303 (15%)
Query: 4 IRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAI 63
++LIDI VN T+ F A ++ RA +GV ++++TG SL S++AL +
Sbjct: 1 MQLIDIGVNLTNSSF----------HDQQAAIVERALEAGVTQMLLTGTSLAVSEQALEL 50
Query: 64 AE----TDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLD 119
+ + LF T GVHP K + + L L E +V A+GECGLD
Sbjct: 51 CQQLDASGAHLFATAGVHPHDAKAW-----DTDSERQLRLLLSEP----RVRAVGECGLD 101
Query: 120 YDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSF 179
++R F P +Q K E Q LA +LP+FLH R+A+ AI++ +D TG V H F
Sbjct: 102 FNR-DFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRDHLTGAVVHCF 160
Query: 180 TGSAEDRDKLLTFNMYIGING--CSLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHA 236
TG E L +++IGI G C + +L +V IP R+M+E+D+PY +
Sbjct: 161 TGEREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIPEGRLMLESDAPYLLPR---- 216
Query: 237 GISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTC 296
+ K K GRNEP + +VL VA +G + +
Sbjct: 217 ---------SLRPKPK-------SGRNEPAFLPEVLREVALHRGE-SAEHTAAHTTATAR 259
Query: 297 RVF 299
F
Sbjct: 260 DFF 262
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 246 bits (630), Expect = 3e-81
Identities = 89/300 (29%), Positives = 143/300 (47%), Gaps = 44/300 (14%)
Query: 3 TIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALA 62
R+ DI VN T F A D V++ A+ +GV+ +++TG +L ES++A
Sbjct: 2 EYRMFDIGVNLTSSQF----------AKDRDDVVACAFDAGVNGLLITGTNLRESQQAQK 51
Query: 63 IAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDR 122
+A + T GVHP ++ +A++ LA + +VVAIGECGLD++R
Sbjct: 52 LARQYSSCWSTAGVHPHDSSQW-----QAATEEAIIELAAQP----EVVAIGECGLDFNR 102
Query: 123 LHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGS 182
+F E Q + F Q +A +P+F+H R+A F ++E D+ G V H FTG+
Sbjct: 103 -NFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGT 161
Query: 183 AEDRDKLLTFNMYIGING--CSLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGIS 239
E+ + +YIGI G C + L +++ IP E+++IETD+PY
Sbjct: 162 REEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPY----------- 210
Query: 240 FVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
+ K + RNEP + +L+ +A +G D L+ T N +F
Sbjct: 211 LLPRDLTPKPSSR---------RNEPAHLPHILQRIAHWRGE-DAAWLAATTDANVKTLF 260
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 201 bits (514), Expect = 9e-64
Identities = 81/282 (28%), Positives = 133/282 (47%), Gaps = 43/282 (15%)
Query: 27 CH------ASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTR 80
H D V+S + ++ ++ G +LE+SK++L +++T R+FC+VGVHP
Sbjct: 18 AHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGVHPHD 77
Query: 81 CKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFE 140
KE PE + L AK KVVAIGE GLD+ R P+E+Q++ F +Q E
Sbjct: 78 AKEV-----PEDFIEHLEKFAK----DEKVVAIGETGLDFFRNI-SPAEVQKRVFVEQIE 127
Query: 141 LAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGING 200
LA LP+ +H+R+A ++ I+ GV H+F+ E K + +GI G
Sbjct: 128 LAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGG 187
Query: 201 -CSLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSL 258
+ E L +VV+ + +E +++ETD P+ P + K
Sbjct: 188 PVTYPKNEALREVVKRVGLEYIVLETDCPFLP---------------PQPFRGK------ 226
Query: 259 VKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFF 300
RNEP ++ V+E ++ G+ ++ N R+F
Sbjct: 227 ---RNEPKYLKYVVETISQVLGV-PEAKVDEATTENARRIFL 264
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 198 bits (507), Expect = 9e-63
Identities = 67/281 (23%), Positives = 115/281 (40%), Gaps = 42/281 (14%)
Query: 27 CH------ASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTR 80
CH + D L RA +GV +IIV E LA+AE L+ +G+HP
Sbjct: 10 CHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGM 69
Query: 81 CKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFE 140
++ + + L + KVVA+GE GLD E Q+ ++Q +
Sbjct: 70 LEKH-----SDVSLEQLQQALER--RPAKVVAVGEIGLDLFGDD-PQFERQQWLLDEQLK 121
Query: 141 LAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGING 200
LA LP+ LH R ++R+ GV H F+GS + ++ + IG+ G
Sbjct: 122 LAKRYDLPVILHSRRTHDKLAMHLKRHDLPR-TGVVHGFSGSLQQAERFVQLGYKIGVGG 180
Query: 201 C-SLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSL 258
+ A DV+ +P+ +++ETD+P + + + +
Sbjct: 181 TITYPRASKTRDVIAKLPLASLLLETDAPD---------MP------LNGFQGQ------ 219
Query: 259 VKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
N P +V V+ + D++++ L +NT +F
Sbjct: 220 ---PNRPEQAARVFAVLCELRRE-PADEIAQALLNNTYTLF 256
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 196 bits (502), Expect = 5e-62
Identities = 84/282 (29%), Positives = 133/282 (47%), Gaps = 44/282 (15%)
Query: 27 CH------ASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTR 80
H D++ V++RA +GVDR+ V G + + A+ + + L+ +G HP
Sbjct: 7 VHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGIIGWHPVD 66
Query: 81 CKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFE 140
+F E+H + + SLA+ KV+ IGE GLDY P+++Q++ F KQ
Sbjct: 67 AIDF-----TEEHLEWIESLAQ----HPKVIGIGEMGLDYHWDK-SPADVQKEVFRKQIA 116
Query: 141 LAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLL-TFNMYIGIN 199
LA KLP+ +H REA D I+ GG+ HSF+GS E D + N YI +
Sbjct: 117 LAKRLKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLG 176
Query: 200 G-CSLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDS 257
G + K A+ +V + + +ER+++ETD+PY P + K
Sbjct: 177 GPVTFKNAKQPKEVAKHVSMERLLVETDAPYLS---------------PHPYRGK----- 216
Query: 258 LVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
RNEP V V E +A KG+ +++ N ++F
Sbjct: 217 ----RNEPARVTLVAEQIAELKGL-SYEEVCEQTTKNAEKLF 253
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 191 bits (487), Expect = 9e-60
Identities = 77/284 (27%), Positives = 117/284 (41%), Gaps = 48/284 (16%)
Query: 27 CH---------ASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVH 77
CH D+ VL++A + V + +L + + + GVH
Sbjct: 8 CHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVH 67
Query: 78 PTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEK 137
P + + L LA E VVA+GE GLDY Q++ F
Sbjct: 68 PLNQND-------PYDVEDLRRLAAEE----GVVALGETGLDYYYTP-ETKVRQQESFIH 115
Query: 138 QFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIG 197
++ P+ +H R+A AD AI+ K GGV H FT E KLL YI
Sbjct: 116 HIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYIS 175
Query: 198 ING-CSLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQ 255
+G + + AE L D R +P++R+++ETDSPY P + K
Sbjct: 176 FSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLA---------------PVPHRGK--- 217
Query: 256 DSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
N+P +VR V E +A KG+ +++L++ N R+F
Sbjct: 218 ------ENQPAMVRDVAEYMAVLKGV-AVEELAQVTTDNFARLF 254
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 190 bits (486), Expect = 2e-59
Identities = 60/287 (20%), Positives = 110/287 (38%), Gaps = 48/287 (16%)
Query: 27 CH------ASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAET-DGRLFCTVGVHPT 79
CH D+ VL +A + V ++ E ++ + ++E +G + +GVHP
Sbjct: 11 CHLSAPDFDRDLDDVLEKAKKANVVALVAVAEHSGEFEKIMQLSERYNGFVLPCLGVHPV 70
Query: 80 RCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFC---PSEIQRKYFE 136
+ E+ ++L K +++AIGE GLD+ E QR+
Sbjct: 71 QGLPPEDQ-RSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLI 129
Query: 137 KQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYI 196
+Q +LA LP+ +H R A +++ + H+F G + + +
Sbjct: 130 RQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAE--KVLLHAFDGRPSVAMEGVRAGYFF 187
Query: 197 GINGCSLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQ 255
I S+ + +V+ +P+ + +ETDSP
Sbjct: 188 SIPP-SIIRSGQKQKLVKQLPLTSICLETDSPA--------------------------- 219
Query: 256 DSL--VKG-RNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
L K RNEP + E +A KGI ++++ N ++F
Sbjct: 220 --LGPEKQVRNEPWNISISAEYIAQVKGI-SVEEVIEVTTQNALKLF 263
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 186 bits (476), Expect = 3e-58
Identities = 41/277 (14%), Positives = 87/277 (31%), Gaps = 46/277 (16%)
Query: 27 CH--ASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEF 84
H ++RA ++ + + LA+A ++ +G HP E
Sbjct: 8 VHLDLYPDPVAVARACEERQLTVLSVTTTPAAWRGTLALAAGRPHVWTALGFHPEVVSER 67
Query: 85 EESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELA-Y 143
+ +GE GLD Q F+
Sbjct: 68 AAD------LPWFDRYLP------ETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRCED 115
Query: 144 ATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSL 203
+ +H R A ++ +E N + H ++GS + + ++ + + ++
Sbjct: 116 HGGRILSIHSRRAESEVLNCLEANPRSG-TPILHWYSGSVTELRRAISLGCWFSVGP-TM 173
Query: 204 KTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGR 262
+ ++R +P +R++ ETD P+ G +
Sbjct: 174 VRTQKGAALIRSMPRDRVLTETDGPFL----ELDG----Q-------------------A 206
Query: 263 NEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
P V+ V+E ++ I ++ R + N R+
Sbjct: 207 ALPWDVKSVVEGLSKIWQI-PASEVERIVKENVSRLL 242
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 146 bits (370), Expect = 2e-42
Identities = 43/297 (14%), Positives = 87/297 (29%), Gaps = 81/297 (27%)
Query: 27 CHASDIAT-VLSRAWSSGVDRIIVTGGSLEESK---------------EALAIAETDGRL 70
H+ + L + +G+ + + K E L ++
Sbjct: 7 LHSEGLGFSELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAAGVKM 66
Query: 71 FCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEI 130
VG+HP E +L E+G+ VA GE GL+ +
Sbjct: 67 HPAVGIHPRCIPPDYE---------FVLGYL----EEGEWVAFGEIGLELVT------DE 107
Query: 131 QRKYFEKQFELAYATKLPMFLHMR-----EAAADFCAIV-ERNKDRFTGGVTHSFTGSAE 184
+ + + Q ELA +P +H +A I+ + + H + +
Sbjct: 108 EIEVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILESLDFPADLAVIDHVNFETLD 167
Query: 185 DRDKLLTFNMYIGING-CSLKTAENL-DVVRGIPIERMMIETDSPYCEIKNAHAGISFVK 242
+L +IG+ +AE+ +V ER M+ +D+ Y
Sbjct: 168 ---MVLETEYWIGLTVQPGKLSAEDAARIVAEHGPERFMLNSDAGY-------------- 210
Query: 243 STWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
E V + + + + +++ + N +
Sbjct: 211 ------------------RDVEITTVAEAAVKIE--EAV-GREEMEKVARENARKFL 246
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-05
Identities = 43/240 (17%), Positives = 68/240 (28%), Gaps = 110/240 (45%)
Query: 27 CHASDI--ATVLSR-AWSSGVDRIIVTGGSLEESKEALAIAETDGR-------------L 70
+ S ++G + +VT A+AIAETD L
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVT---------AVAIAETDSWESFFVSVRKAITVL 303
Query: 71 FCTVGVH-----------PTRCKEFEESGD----------------------------PE 91
F +GV P+ ++ E+ + P
Sbjct: 304 F-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 92 ------------KHF------QALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRK 133
K+ Q+L L + K K + GLD R+ F +RK
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLT-LRKAKAPS----GLDQSRIPFS----ERK 413
Query: 134 -YFEKQFELAYATKLPMFL--H---MREAAADFCAIVERNKDRFTGG-----VTHSFTGS 182
F +F LP+ H + A+ + +N F V +F GS
Sbjct: 414 LKFSNRF-------LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
enzyme evolution, hyperthermophilic, lactonase,
hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
solfataricus} PDB: 2vc5_A*
Length = 314
Score = 42.4 bits (99), Expect = 1e-04
Identities = 40/282 (14%), Positives = 82/282 (29%), Gaps = 39/282 (13%)
Query: 36 LSRAWSSGVDRII-VTGGSLEESKEAL-AIAE-TDGRLFCTVGVHPTR-CKEFEESGDPE 91
+ RA GV I+ T L + + + T L G++ + + +
Sbjct: 53 VKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGIYIYIDLPFYFLNRSID 112
Query: 92 KHFQALLSLAKEGI-EKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMF 150
+ + KEGI + D ++ K TK+P+
Sbjct: 113 EIADLFIHDIKEGIQGTLNKAGFVKIAADEPG----ITKDVEKVIRAAAIANKETKVPII 168
Query: 151 LHMREAAADFCAIV----ERNKDRFTGGVTHSF-TGSAEDRDKLLTFNMYIGINGCSLKT 205
H E D + H T + + K+ +IG++ L
Sbjct: 169 THSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDL 228
Query: 206 --------AENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDS 257
L +++ +++MI D W + K E +
Sbjct: 229 FLPVDKRNETTLRLIKDGYSDKIMISHDYCC-------------TIDWGTAKPEYKPK-- 273
Query: 258 LVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
L + + + + G+N+ + ++ N + F
Sbjct: 274 LAPRWSITLIFEDTIPFLKR-NGVNE-EVIATIFKENPKKFF 313
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX;
1.60A {Listeria monocytogenes serotype 4b
strorganism_taxid}
Length = 330
Score = 32.0 bits (72), Expect = 0.23
Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 10/129 (7%)
Query: 27 CHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEE 86
+ + V + +G+ +I+ T G + I + + E+ E
Sbjct: 70 DYGRRVLDVAQISKETGI-QIVGTAGFNKSFLWDGKIKPELKPIIGDFETYY----EWIE 124
Query: 87 SGDPEKHFQALLSLAKEGIEK-GKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYAT 145
+ +K + +++ + G+E + G Y+ + ++ K + T
Sbjct: 125 NTTTDKLTEFVVNEVENGLEGTPYKAGQVKFGTGYNM----ITPLEEKTIRAVARAHHET 180
Query: 146 KLPMFLHMR 154
K P+ H
Sbjct: 181 KAPIHSHTE 189
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 30.2 bits (68), Expect = 0.78
Identities = 5/51 (9%), Positives = 12/51 (23%), Gaps = 7/51 (13%)
Query: 3 TIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGS 53
++ + + + K +L + D I G
Sbjct: 34 SLTVYKFDIQAKNVDLLQSLRYK-------HPLLCCNFIDNTDLQIYVGTV 77
>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} SCOP: a.26.1.3 PDB:
1j7v_L 1y6k_L 2h24_A 1inr_A 1ilk_A 1lk3_A 1y6n_L 1vlk_A
1y6m_L
Length = 160
Score = 28.8 bits (64), Expect = 1.4
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 80 RCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGE 115
RC F + K + + + + EKG A+ E
Sbjct: 107 RCHRFLPCENKSKAVEQVKNAFNKLQEKGIYKAMSE 142
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 343
Score = 28.2 bits (62), Expect = 3.6
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 140 ELAYATKLPMFL------HMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFN 193
+A T MF A + + R + + G VT++ E+ +
Sbjct: 159 HVAKRTGCEMFCVGCEMTTAEPHEAMWRETIARVRTEYDGLVTYNCNHGREEHVRFWDAV 218
Query: 194 MYIGIN 199
I +
Sbjct: 219 DLISSS 224
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.1
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 4/19 (21%)
Query: 52 GSLE----ESKEALAIAET 66
SL+ +S ALAI T
Sbjct: 27 ASLKLYADDSAPALAIKAT 45
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Length = 330
Score = 27.7 bits (61), Expect = 5.5
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 6/106 (5%)
Query: 61 LAIAE-TDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLD 119
++ D + G+ E+ Q L + GIE + A G+
Sbjct: 80 AEVSRAADVHIVAATGLWFDP-PLSMRLRSVEELTQFFLREIQYGIEDTGIRA----GII 134
Query: 120 YDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVE 165
+ Q + + AT +P+ H + D
Sbjct: 135 KVATTGKATPFQELVLKAAARASLATGVPVTTHTAASQRDGEQQAA 180
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
synoviae} PDB: 3msr_A*
Length = 363
Score = 27.8 bits (61), Expect = 5.5
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 17/130 (13%)
Query: 112 AIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNK--- 168
I + G Y + ++ K E + T P+ +H +
Sbjct: 152 GIIKAGTGYGAID----RLELKALEVAARTSILTGCPILVHTQLGTMALEVAKHLIGFGA 207
Query: 169 --DRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSL-------KTAENL-DVVRGIPIE 218
D+ + + + + +G AEN+ +V +
Sbjct: 208 NPDKIQISHLNKNPDKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQK 267
Query: 219 RMMIETDSPY 228
+ + D+
Sbjct: 268 HITLSLDAGR 277
>3dlq_I Interleukin-22; cytokine-receptor complex, fibronectin-III,
cytokine, glycoprotein, polymorphism, secreted,
membrane; 1.90A {Homo sapiens} SCOP: a.26.1.3 PDB:
1m4r_A 3g9v_B 3q1s_I 1ykb_A* 3dgc_L*
Length = 151
Score = 26.9 bits (59), Expect = 5.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 79 TRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGE 115
+ C + +++ Q L K+ E G++ AIGE
Sbjct: 102 STCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGE 138
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 27.1 bits (61), Expect = 6.5
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 45 DRIIVTGGSLE---ESKEALAIAETDGRLFCTVGVHPTRCKEFEESGD 89
DRI T + L G+L VG + R E+ GD
Sbjct: 148 DRIYTTAAGPKIPEPLIRQLKD---GGKLLMPVGRYLQRLVLAEKRGD 192
>3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase;
HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB:
3orw_A* 3f4c_A* 3f4d_A*
Length = 330
Score = 27.4 bits (60), Expect = 6.6
Identities = 14/130 (10%), Positives = 39/130 (30%), Gaps = 19/130 (14%)
Query: 112 AIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHM---REAAADFCAIVERNK 168
+ + R+ E ++ +F T + H ++E
Sbjct: 146 GVIKLASSKGRIT----EYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGA 201
Query: 169 DRFTGGVTHS-FTGSAEDRDKLLTFNMYIGINGCSLKT-------AENLDVVRGI----P 216
D + H + K L + +YI + ++ E + + +
Sbjct: 202 DPKKIVIGHMCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGY 261
Query: 217 IERMMIETDS 226
+++M+ ++
Sbjct: 262 EKQIMLSHNT 271
>4a6q_A Histone deacetylase complex subunit SAP18; transcription,
splicing, RNA metabolism, ubiquitin-like; HET: MSE;
1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Length = 143
Score = 26.4 bits (58), Expect = 8.2
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 69 RLFCTVGVHPTRCKEFEESGDPEKHFQ 95
R+F T R EF P Q
Sbjct: 31 RVFTTNNGRHHRMDEFSRGNVPSSELQ 57
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor
receptor and arginine...; endosome, trafficking complex,
VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces
cerevisiae} PDB: 2caz_A
Length = 174
Score = 26.5 bits (58), Expect = 8.3
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 217 IERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVA 276
IE+ M ++ +I A + V+ + + D +S+ + + + Q+ +VA
Sbjct: 68 IEQTMHSLNA---QIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTD--GLNQLYNLVA 122
Query: 277 GCKGIND-IDQLSRTLYHN 294
+ D I+ LSR L+
Sbjct: 123 QDYALTDTIECLSRMLHRG 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,069,428
Number of extensions: 314432
Number of successful extensions: 825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 773
Number of HSP's successfully gapped: 42
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)