RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020985
(319 letters)
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 137 bits (346), Expect = 2e-39
Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 44/297 (14%)
Query: 6 LIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAE 65
+ DI VN T F D V++ A+ +GV+ +++TG +L ES++A +A
Sbjct: 1 MFDIGVNLTSSQFAK----------DRDDVVACAFDAGVNGLLITGTNLRESQQAQKLAR 50
Query: 66 TDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHF 125
+ T GVHP +++ + + A + +VVAIGECGLD++R
Sbjct: 51 QYSSCWSTAGVHPHDSSQWQAATEEAIIELA---------AQPEVVAIGECGLDFNRNFS 101
Query: 126 CPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAED 185
P E +R + Q +A +P+F+H R+A F ++E D+ G V H FTG+ E+
Sbjct: 102 TPEEQERAFVA-QLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREE 160
Query: 186 RDKLLTFNMYIGINGCSLKTAENL---DVVRGIPIERMMIETDSPYCEIKNAHAGISFVK 242
+ +YIGI G L +++ IP E+++IETD+PY ++
Sbjct: 161 MQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRD--------- 211
Query: 243 STWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
K + RNEP + +L+ +A +G D L+ T N +F
Sbjct: 212 --LTPKPSSR---------RNEPAHLPHILQRIAHWRGE-DAAWLAATTDANVKTLF 256
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 134 bits (338), Expect = 3e-38
Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 47/298 (15%)
Query: 5 RLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIA 64
++D + F D V+S + ++ ++ G +LE+SK++L ++
Sbjct: 4 HMVDTHAHLHFHQFDD----------DRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLS 53
Query: 65 ETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLH 124
+T R+FC+VGVHP KE E A + KVVAIGE GLD+ R +
Sbjct: 54 KTSDRIFCSVGVHPHDAKEVPEDFIEHLEKFA---------KDEKVVAIGETGLDFFR-N 103
Query: 125 FCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAE 184
P+E+Q++ F +Q ELA LP+ +H+R+A ++ I+ GV H+F+ E
Sbjct: 104 ISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYE 163
Query: 185 DRDKLLTFNMYIGING--CSLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGISFVK 242
K + +GI G K +VV+ + +E +++ETD P+
Sbjct: 164 WAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLP------------ 211
Query: 243 STWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVFF 300
P + K RNEP ++ V+E ++ G+ ++ N R+F
Sbjct: 212 ---PQPFRGK---------RNEPKYLKYVVETISQVLGV-PEAKVDEATTENARRIFL 256
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
{Escherichia coli [TaxId: 562]}
Length = 265
Score = 117 bits (292), Expect = 1e-31
Identities = 68/273 (24%), Positives = 107/273 (39%), Gaps = 39/273 (14%)
Query: 29 ASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESG 88
D+ VL++A + V + +L + + + GVHP + +
Sbjct: 19 HKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVE 78
Query: 89 DPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHFCPSEIQRKYFEKQFELAYATKLP 148
D + + VVA+GE GLDY Q + ++ P
Sbjct: 79 DLRRL-----------AAEEGVVALGETGLDYYYTPETKVRQQESFI-HHIQIGRELNKP 126
Query: 149 MFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAEN 208
+ +H R+A AD AI+ K GGV H FT E KLL YI +G
Sbjct: 127 VIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAE 186
Query: 209 --LDVVRGIPIERMMIETDSPYCEIKNAHAGISFVKSTWPSKKKEKYDQDSLVKGRNEPC 266
D R +P++R+++ETDSPY P + K N+P
Sbjct: 187 QLRDAARYVPLDRLLVETDSPYL---------------APVPHRGK---------ENQPA 222
Query: 267 LVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
+VR V E +A KG+ +++L++ N R+F
Sbjct: 223 MVRDVAEYMAVLKGV-AVEELAQVTTDNFARLF 254
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 110 bits (274), Expect = 4e-29
Identities = 68/299 (22%), Positives = 111/299 (37%), Gaps = 46/299 (15%)
Query: 3 TIRLIDIAVNFTDGMFKGIYHGKQCHASDIATVLSRAWSSGVDRIIVTGGSLEESKEALA 62
R ID +F F G D L RA +GV +IIV E LA
Sbjct: 2 ICRFIDTHCHFDFPPFSG----------DEEASLQRAAQAGVGKIIVPATEAENFARVLA 51
Query: 63 IAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDR 122
+AE L+ +G+HP ++ + + KVVA+GE GLD
Sbjct: 52 LAENYQPLYAALGLHPGMLEKHSDVSLEQLQQ-------ALERRPAKVVAVGEIGLDLFG 104
Query: 123 LHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGS 182
Q ++Q +LA LP+ LH R + D GV H F+GS
Sbjct: 105 DDPQFERQQW-LLDEQLKLAKRYDLPVILHSRRTHDKLAMH-LKRHDLPRTGVVHGFSGS 162
Query: 183 AEDRDKLLTFNMYIGINGCSLKTA--ENLDVVRGIPIERMMIETDSPYCEIKNAHAGISF 240
+ ++ + IG+ G + DV+ +P+ +++ETD+P
Sbjct: 163 LQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDM----------- 211
Query: 241 VKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
+ + + N P +V V+ + D++++ L +NT +F
Sbjct: 212 ----PLNGFQGQ---------PNRPEQAARVFAVLCELRRE-PADEIAQALLNNTYTLF 256
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 99.6 bits (247), Expect = 6e-25
Identities = 33/300 (11%), Positives = 79/300 (26%), Gaps = 48/300 (16%)
Query: 18 FKGIYHGKQCHASDIATVLSRAWSSGVDRIIV--TGGSLEESKEALAIAE-TDGRLFCTV 74
FK + + I ++ + GV +I ++ L + T +
Sbjct: 21 FKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACT 80
Query: 75 GVHPTRCKEFE-ESGDPEKHFQALLSLAKEGIE--KGKVVAIGECGLDYDRLHFCPSEIQ 131
G + + ++ Q ++ ++GI+ + K I E G ++ ++
Sbjct: 81 GYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEGKIT----PLE 136
Query: 132 RKYFEKQFELAYATKLPMFLHMREAAADFCAIVE----RNKDRFTGGVTHSFTGSAEDRD 187
K F T P+ H + + + ++
Sbjct: 137 EKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNIL 196
Query: 188 KLLTFNMYIGINGC--------SLKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAGIS 239
K++ Y+ + + A + + R+M+ D
Sbjct: 197 KMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITR----------- 245
Query: 240 FVKSTWPSKKKEKYDQDSLVKGRNEPCLVRQVLEVVAGCKGINDIDQLSRTLYHNTCRVF 299
+S + L+ + + G + L N + F
Sbjct: 246 --RSHLKANGG-----------YGYDYLLTTFIPQLR-QSGF-SQADVDVMLRENPSQFF 290
>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase
subunit D, GatD {Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 352
Score = 35.5 bits (81), Expect = 0.007
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 5/99 (5%)
Query: 28 HASDIATVLSRAWSSGVDRIIVTGG--SLEESKEALAIAETDGRLFCTVGVHPTRCKEFE 85
+ + A + G D ++V G ++ + AL+ G +
Sbjct: 69 YWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAALSFMLRTPVPVVFTGAQRSS---DR 125
Query: 86 ESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLH 124
S D + Q + A I + V LH
Sbjct: 126 PSSDASLNIQCSVRAATSEIAEVTVCMHATMDDLSCHLH 164
>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 342
Score = 33.7 bits (75), Expect = 0.026
Identities = 26/232 (11%), Positives = 54/232 (23%), Gaps = 13/232 (5%)
Query: 7 IDIAVNFTDGMFKGIYHGKQCHASDIATV----LSRAWSSGVDRIIVTGG----SLEESK 58
D+ V F + G +S A + R D I + K
Sbjct: 63 SDLTVFSPRASFMAHHIGDFNVSSTWAAICNELCYRVSQLFPDNFIGAAMLPQSPGVDPK 122
Query: 59 EALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGL 118
+ E + + V ++ P + + ++ +E I
Sbjct: 123 TCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVSTS 182
Query: 119 DYDRLHFCPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHS 178
H + + F ++ V + RF G
Sbjct: 183 CNTCFHTTGAHYLNADTTAFMQCVAGDLFKDFPELKFVIPHGGGAVPYHWGRFRGLAQEM 242
Query: 179 FTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGIPIERMMIETDSPYCE 230
ED F + + IP++ ++ ++
Sbjct: 243 KKPLLEDHVLNNIFFDTCVYHQPGIDLL-----NTVIPVDNVLFASEMIGAV 289
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of
carbazole CarAa {Janthinobacterium sp. j3 [TaxId:
213804]}
Length = 242
Score = 30.2 bits (68), Expect = 0.25
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 125 FCPSEIQRKYFEKQFELAYATKLPMFLH--------MREAAADFCA 162
C ++ +RK +E++FE + PM L REA DF A
Sbjct: 161 PCANDEERKKYEQEFESKWK---PMALEGFNNDDIWAREAMVDFYA 203
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 29.2 bits (64), Expect = 0.62
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 28 HASDIATVLSRAWSSGVDRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTR 80
D A + A GV +I GG ++ + A+ + +G +G+ P
Sbjct: 38 EKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLG 90
>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium
tepidum [TaxId: 1097]}
Length = 228
Score = 28.6 bits (62), Expect = 0.94
Identities = 19/194 (9%), Positives = 43/194 (22%), Gaps = 10/194 (5%)
Query: 67 DGRLFCTVGVHPTRCKE-FEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYDRLHF 125
DG L ++ + E E + + + GL+ +
Sbjct: 10 DGTLLKVESMNRRVLADALIEVYGTEGS-TGSHDFSGKMDGAIIYEVLSNVGLERAEIAD 68
Query: 126 CPSEIQRKYFEKQFELAYATKLPMFLHMREAAADFCAIVERNKDRFTGGVTHSFTGSAED 185
+ + Y E A + + +RE + + TG S +
Sbjct: 69 KFDKAKETYIALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKL 128
Query: 186 RDKLLTFNMYIGINGCS--------LKTAENLDVVRGIPIERMMIETDSPYCEIKNAHAG 237
F + +++I D+ +
Sbjct: 129 PGIDHYFPFGAFADDALDRNELPHIALERARRMTGANYSPSQIVIIGDTEHDIRCARELD 188
Query: 238 ISFVKSTWPSKKKE 251
+ + E
Sbjct: 189 ARSIAVATGNFTME 202
>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis inhibitory
factor, CSIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 27.4 bits (61), Expect = 1.6
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 68 GRLFCTVGVHPTRCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGE 115
G T+ + RC F + K + + + + EKG A+ E
Sbjct: 90 GENLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQEKGIYKAMSE 137
>d3dlqi1 a.26.1.3 (I:41-179) Interleukin-22 (IL-22) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 139
Score = 27.0 bits (60), Expect = 1.7
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 80 RCKEFEESGDPEKHFQALLSLAKEGIEKGKVVAIGE 115
C + +++ Q L K+ E G++ AIGE
Sbjct: 91 TCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGE 126
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 26.0 bits (57), Expect = 2.2
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 175 VTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVVRGI 215
++ R + + + +NG +L+ AE+ + V +
Sbjct: 43 ISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEAL 83
>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 111
Score = 25.4 bits (55), Expect = 5.2
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 175 VTHSFTGSAEDRDKLLTFNMYIGINGCSLKTAENLDVV---RGIPIERMMIETDSP 227
V + + + I G K +V+ + E + ++ S
Sbjct: 40 VHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL 95
>d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi
[TaxId: 1708]}
Length = 366
Score = 26.5 bits (58), Expect = 5.2
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 84 FEESGDPEKHFQALLSLAKEGIEKGKVVAIGECGLDYD 121
L +A+ EKGKV A E G+
Sbjct: 247 TGSDAFLAGLVADLRMIAEIADEKGKVSAFTEFGVSGG 284
>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 24.9 bits (54), Expect = 7.9
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 175 VTHSFTGSAEDRDKLLTFNMYI-GINGCSLKTAENLDVVRGI 215
+ GS D L+ I +NG SL L V I
Sbjct: 40 IQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLI 81
>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 208
Score = 25.2 bits (55), Expect = 9.5
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 24/133 (18%)
Query: 104 GIEKGKVVAIGECGLDYDRLHFC-------PSEIQRKYFEKQFELAYATKLPMFLHMREA 156
G E G +A+ G +Y R+ IQ + + E + +F ++ E
Sbjct: 62 GTETGNFLALDLGGTNY-RVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAET 120
Query: 157 AADFCAIVERNKDRFTGGVTHSF--TGSAEDRDKLLTFNMYIGINGCSLKTAENLDVV-- 212
ADF +F G T SF L+ + +G E +V
Sbjct: 121 LADFLENNGMKDKKFDLGFTFSFPCVQKGLTHATLVRWTKGFSADGV-----EGHNVAEL 175
Query: 213 -------RGIPIE 218
R + ++
Sbjct: 176 LQTELDKRELNVK 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,219,186
Number of extensions: 57638
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 21
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)