BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020988
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 33/182 (18%)
Query: 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
FSCP+C++PL R+ ++ + C + + +K+ Y++L P
Sbjct: 3 FSCPLCHQPLSRE-----------KNSYICPQRHQFDXAKEGYVNLL------------P 39
Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFK-SAQGGLLVDVSCGSGL 179
+ R P S + R+ F +G P + +AQ + + ++D+ CG G
Sbjct: 40 VQHKRSRDPGDSAEXXQA-RRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGY 98
Query: 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239
++ FA + LD S+ ++ Q + S+ RLPF+ D
Sbjct: 99 YTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH--------RLPFSDTSXD 150
Query: 240 AV 241
A+
Sbjct: 151 AI 152
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LA 222
+G +DV GSG+ + FA+ G V+ +D + ++ + +++D+ L S+ +
Sbjct: 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ 136
Query: 223 LVRADVCRLPFA-SGFVDAVHAGAA 246
LV D R+ +A DA+H GAA
Sbjct: 137 LVVGD-GRMGYAEEAPYDAIHVGAA 160
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228
+++DV CG+G+ S AK+G V+A+D SE +L Q D I+ + L + L++ +
Sbjct: 48 VVLDVGCGTGILSMFAAKAGA-KKVIAVDQSE-ILYQAMDIIRLNK--LEDTIVLIKGKI 103
Query: 229 CRLPFASGFVDAV 241
+ VD +
Sbjct: 104 EEVSLPVEKVDVI 116
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 92 KCDKTYSSKDNYLDLTVISGLKDYTEVK-PASTELFRSPFVSFL--YERGWRQNFNRSGF 148
+ ++T+ S+D++L L +G+K + P + L V L +E GW
Sbjct: 177 RINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGW--------V 228
Query: 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208
D + + G ++D+ G + + + VVA+D E L + YD
Sbjct: 229 TVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYD 288
Query: 209 FIKQ 212
+K+
Sbjct: 289 NLKR 292
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228
+++DV CG+G+ S AK+G V+ +D SE +L Q D I+ + L + L++ +
Sbjct: 67 VVLDVGCGTGILSMFAAKAGA-KKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKI 122
Query: 229 CRLPFASGFVDAV 241
+ VD +
Sbjct: 123 EEVHLPVEKVDVI 135
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 105 DLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNF 143
DLT + + T V+ S + +PFVSF+ +R W+ N
Sbjct: 73 DLTQLPVITSNTIVRCRSCRTYINPFVSFIDQRRWKCNL 111
>pdb|3BXO|A Chain A, Crystal Structure Of Streptomyces Venezuelae Desvi
pdb|3BXO|B Chain B, Crystal Structure Of Streptomyces Venezuelae Desvi
Length = 239
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC 206
L+DV+CG+G F K + L+ SE+ML
Sbjct: 44 LLDVACGTGTHLEHFTKE--FGDTAGLELSEDMLTHA 78
>pdb|1AKO|A Chain A, Exonuclease Iii From Escherichia Coli
Length = 268
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 145 RSGFPGPDEEFKMAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML 203
R GFPG DEE AQ A+ LL +V+ +G F + ++ F +N+
Sbjct: 77 RRGFPGDDEE---AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQ 133
Query: 204 RQCYDFIKQDNTIL 217
+K+DN +L
Sbjct: 134 NYLETELKRDNPVL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,531,811
Number of Sequences: 62578
Number of extensions: 327806
Number of successful extensions: 643
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 10
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)