Query 020988
Match_columns 319
No_of_seqs 299 out of 3065
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 1.4E-24 3.1E-29 189.8 12.0 149 103-278 12-160 (238)
2 PRK11088 rrmA 23S rRNA methylt 99.9 3.5E-23 7.5E-28 187.4 16.1 174 60-278 2-185 (272)
3 PF01209 Ubie_methyltran: ubiE 99.9 1.9E-23 4.2E-28 184.1 12.6 151 101-278 6-157 (233)
4 KOG1540 Ubiquinone biosynthesi 99.8 7.9E-21 1.7E-25 163.7 11.6 152 101-276 59-216 (296)
5 PLN02233 ubiquinone biosynthes 99.8 6E-20 1.3E-24 165.1 14.5 117 160-276 67-184 (261)
6 PF08241 Methyltransf_11: Meth 99.8 3E-18 6.6E-23 129.2 10.4 94 171-271 1-94 (95)
7 PRK05785 hypothetical protein; 99.8 2.4E-18 5.2E-23 151.4 11.0 96 166-275 51-146 (226)
8 PLN02244 tocopherol O-methyltr 99.8 2.8E-17 6.1E-22 153.2 16.8 108 165-275 117-224 (340)
9 TIGR02752 MenG_heptapren 2-hep 99.7 4.1E-17 9E-22 144.1 13.9 116 157-275 36-152 (231)
10 COG2227 UbiG 2-polyprenyl-3-me 99.7 8.7E-18 1.9E-22 144.9 8.2 105 165-275 58-162 (243)
11 PF13847 Methyltransf_31: Meth 99.7 1.2E-16 2.6E-21 132.1 12.9 108 165-276 2-112 (152)
12 PLN02396 hexaprenyldihydroxybe 99.7 7.3E-17 1.6E-21 148.4 12.0 107 165-275 130-236 (322)
13 PRK14103 trans-aconitate 2-met 99.7 1.3E-16 2.8E-21 143.1 12.8 107 157-274 20-126 (255)
14 PRK11036 putative S-adenosyl-L 99.7 1.4E-16 3E-21 143.0 12.8 108 165-276 43-151 (255)
15 PRK10258 biotin biosynthesis p 99.7 6E-16 1.3E-20 138.4 13.6 111 156-276 32-142 (251)
16 PTZ00098 phosphoethanolamine N 99.7 8.9E-16 1.9E-20 138.2 14.7 117 153-275 39-157 (263)
17 PRK15068 tRNA mo(5)U34 methylt 99.7 1.5E-15 3.2E-20 140.5 14.3 113 156-272 112-224 (322)
18 PRK11207 tellurite resistance 99.7 2.1E-15 4.6E-20 130.1 14.1 111 157-273 21-133 (197)
19 PF12847 Methyltransf_18: Meth 99.7 1.8E-15 3.9E-20 118.1 11.9 104 166-275 1-109 (112)
20 PRK01683 trans-aconitate 2-met 99.6 2.7E-15 5.8E-20 134.7 13.7 110 156-274 21-130 (258)
21 TIGR00452 methyltransferase, p 99.6 4.8E-15 1E-19 135.9 14.9 115 156-274 111-225 (314)
22 KOG4300 Predicted methyltransf 99.6 2.6E-15 5.7E-20 125.9 11.5 114 156-273 66-181 (252)
23 KOG1270 Methyltransferases [Co 99.6 5.6E-16 1.2E-20 134.7 7.6 103 167-275 90-196 (282)
24 PF13649 Methyltransf_25: Meth 99.6 7.9E-16 1.7E-20 118.3 7.5 95 170-268 1-101 (101)
25 PLN02490 MPBQ/MSBQ methyltrans 99.6 4.1E-15 8.8E-20 137.5 12.9 103 165-273 112-214 (340)
26 COG2230 Cfa Cyclopropane fatty 99.6 5.6E-15 1.2E-19 131.8 13.3 118 155-278 61-180 (283)
27 PF08242 Methyltransf_12: Meth 99.6 4.7E-17 1E-21 124.6 -0.2 97 171-270 1-99 (99)
28 PLN02336 phosphoethanolamine N 99.6 1E-14 2.2E-19 142.2 16.1 116 155-275 255-370 (475)
29 TIGR00477 tehB tellurite resis 99.6 7.4E-15 1.6E-19 126.5 13.3 112 156-274 20-133 (195)
30 TIGR02072 BioC biotin biosynth 99.6 1E-14 2.2E-19 128.8 13.6 104 165-275 33-136 (240)
31 PRK11873 arsM arsenite S-adeno 99.6 1.3E-14 2.9E-19 131.3 14.6 109 163-274 74-183 (272)
32 PRK00107 gidB 16S rRNA methylt 99.6 4.1E-14 8.9E-19 120.7 16.5 103 166-276 45-147 (187)
33 PRK08317 hypothetical protein; 99.6 2.5E-14 5.3E-19 126.3 15.6 115 156-274 9-124 (241)
34 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.8E-14 3.9E-19 128.6 14.5 105 165-273 55-163 (247)
35 PF02353 CMAS: Mycolic acid cy 99.6 1.4E-14 3E-19 130.6 12.9 115 155-275 51-167 (273)
36 PF13489 Methyltransf_23: Meth 99.6 6.1E-15 1.3E-19 122.2 9.7 105 157-276 12-117 (161)
37 TIGR03587 Pse_Me-ase pseudamin 99.6 4.5E-14 9.8E-19 122.3 14.1 91 165-264 42-134 (204)
38 smart00828 PKS_MT Methyltransf 99.6 2.9E-14 6.3E-19 125.3 13.1 105 168-275 1-105 (224)
39 PRK06202 hypothetical protein; 99.6 4.3E-14 9.3E-19 125.0 12.6 98 162-265 56-159 (232)
40 PF08003 Methyltransf_9: Prote 99.6 3.9E-14 8.5E-19 126.6 12.1 110 156-271 105-216 (315)
41 TIGR00740 methyltransferase, p 99.6 9.9E-14 2.1E-18 123.2 14.6 105 165-273 52-160 (239)
42 PRK12335 tellurite resistance 99.6 7.3E-14 1.6E-18 127.4 14.1 103 164-273 118-222 (287)
43 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.1E-13 2.4E-18 121.0 14.1 111 160-275 33-144 (223)
44 TIGR03840 TMPT_Se_Te thiopurin 99.5 2E-13 4.3E-18 119.0 15.4 110 165-276 33-154 (213)
45 PF07021 MetW: Methionine bios 99.5 2.9E-14 6.2E-19 119.8 9.2 98 156-266 5-104 (193)
46 PF05401 NodS: Nodulation prot 99.5 1.1E-13 2.4E-18 116.5 12.2 111 159-277 36-146 (201)
47 TIGR00138 gidB 16S rRNA methyl 99.5 2.7E-13 5.7E-18 115.3 14.4 102 165-274 41-142 (181)
48 PRK00216 ubiE ubiquinone/menaq 99.5 3.4E-13 7.4E-18 119.1 15.4 116 158-275 43-159 (239)
49 TIGR02469 CbiT precorrin-6Y C5 99.5 5.1E-13 1.1E-17 105.8 14.3 112 156-273 9-121 (124)
50 COG4106 Tam Trans-aconitate me 99.5 6.2E-14 1.4E-18 118.5 9.3 111 156-275 20-130 (257)
51 PRK06922 hypothetical protein; 99.5 2E-13 4.4E-18 133.8 13.2 108 163-274 415-537 (677)
52 TIGR02021 BchM-ChlM magnesium 99.5 4.6E-13 9.9E-18 117.4 13.7 105 156-267 43-151 (219)
53 PRK00121 trmB tRNA (guanine-N( 99.5 3.3E-13 7.2E-18 116.8 12.0 107 166-275 40-157 (202)
54 TIGR02081 metW methionine bios 99.5 2.1E-13 4.5E-18 117.3 10.7 98 156-266 5-104 (194)
55 PF03848 TehB: Tellurite resis 99.5 5E-13 1.1E-17 113.6 12.6 111 158-275 22-134 (192)
56 PRK13944 protein-L-isoaspartat 99.5 1.1E-12 2.4E-17 113.8 15.1 110 155-272 61-171 (205)
57 PRK11705 cyclopropane fatty ac 99.5 6.9E-13 1.5E-17 125.4 13.8 111 155-275 156-268 (383)
58 smart00138 MeTrc Methyltransfe 99.5 5.5E-13 1.2E-17 120.1 12.4 106 166-271 99-239 (264)
59 PLN02336 phosphoethanolamine N 99.4 6.9E-13 1.5E-17 129.4 12.7 109 156-271 27-139 (475)
60 TIGR00537 hemK_rel_arch HemK-r 99.4 2.7E-12 6E-17 108.9 14.7 112 156-275 9-141 (179)
61 PRK13255 thiopurine S-methyltr 99.4 2.5E-12 5.5E-17 112.4 14.7 110 164-275 35-156 (218)
62 PRK13942 protein-L-isoaspartat 99.4 3.2E-12 6.9E-17 111.5 15.3 110 155-273 65-175 (212)
63 PF05175 MTS: Methyltransferas 99.4 2.9E-12 6.3E-17 107.9 14.2 119 154-276 19-142 (170)
64 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.2E-12 2.5E-17 112.7 11.2 107 166-275 16-133 (194)
65 PRK08287 cobalt-precorrin-6Y C 99.4 3.6E-12 7.9E-17 108.9 14.1 112 155-274 20-131 (187)
66 PRK07580 Mg-protoporphyrin IX 99.4 4.8E-12 1E-16 111.5 14.4 102 156-264 50-156 (230)
67 PRK11188 rrmJ 23S rRNA methylt 99.4 3.5E-12 7.5E-17 111.0 13.2 106 164-283 49-174 (209)
68 TIGR00080 pimt protein-L-isoas 99.4 6.1E-12 1.3E-16 110.0 14.7 109 155-272 66-175 (215)
69 PRK14121 tRNA (guanine-N(7)-)- 99.4 3E-12 6.5E-17 119.7 13.4 114 157-273 113-234 (390)
70 PLN02585 magnesium protoporphy 99.4 5.1E-12 1.1E-16 116.1 14.5 95 155-254 130-229 (315)
71 PLN03075 nicotianamine synthas 99.4 1E-11 2.2E-16 112.2 16.2 105 165-271 122-230 (296)
72 TIGR02716 C20_methyl_CrtF C-20 99.4 6.6E-12 1.4E-16 115.6 14.8 115 156-275 139-255 (306)
73 PRK05134 bifunctional 3-demeth 99.4 6.6E-12 1.4E-16 111.0 13.8 113 155-273 37-150 (233)
74 PRK15001 SAM-dependent 23S rib 99.4 9.6E-12 2.1E-16 116.7 14.9 121 154-275 216-341 (378)
75 TIGR01983 UbiG ubiquinone bios 99.4 1.1E-11 2.4E-16 108.8 14.0 101 166-271 45-146 (224)
76 PRK09489 rsmC 16S ribosomal RN 99.3 2.6E-11 5.6E-16 112.9 15.4 116 154-275 184-304 (342)
77 PRK00377 cbiT cobalt-precorrin 99.3 4E-11 8.6E-16 103.5 15.0 112 156-272 30-143 (198)
78 PRK00312 pcm protein-L-isoaspa 99.3 4.8E-11 1E-15 104.0 14.9 108 155-273 67-174 (212)
79 PRK14968 putative methyltransf 99.3 3.9E-11 8.4E-16 102.2 13.6 118 154-275 11-149 (188)
80 PF13659 Methyltransf_26: Meth 99.3 1.1E-11 2.3E-16 97.5 8.9 105 167-274 1-115 (117)
81 PRK04266 fibrillarin; Provisio 99.3 6.9E-11 1.5E-15 103.9 14.8 101 162-273 68-175 (226)
82 PLN02232 ubiquinone biosynthes 99.3 1E-11 2.2E-16 103.5 9.0 83 194-276 1-83 (160)
83 TIGR01177 conserved hypothetic 99.3 5E-11 1.1E-15 110.9 14.6 124 155-283 171-303 (329)
84 PRK07402 precorrin-6B methylas 99.3 9.4E-11 2E-15 101.0 15.3 114 155-275 29-143 (196)
85 PRK13256 thiopurine S-methyltr 99.3 7.9E-11 1.7E-15 102.9 14.8 111 164-276 41-165 (226)
86 KOG3010 Methyltransferase [Gen 99.3 2.9E-11 6.4E-16 104.2 9.5 103 169-276 36-139 (261)
87 TIGR03438 probable methyltrans 99.2 2E-10 4.3E-15 105.5 15.1 104 165-270 62-173 (301)
88 COG2518 Pcm Protein-L-isoaspar 99.2 2.1E-10 4.5E-15 98.0 13.8 108 155-273 61-168 (209)
89 COG2242 CobL Precorrin-6B meth 99.2 4.1E-10 8.8E-15 94.3 14.9 114 152-272 20-133 (187)
90 PRK14967 putative methyltransf 99.2 2E-10 4.3E-15 101.0 13.8 104 164-273 34-158 (223)
91 TIGR03534 RF_mod_PrmC protein- 99.2 3E-10 6.6E-15 101.3 15.0 76 166-245 87-162 (251)
92 TIGR00536 hemK_fam HemK family 99.2 3.3E-10 7.2E-15 103.2 15.3 74 168-244 116-189 (284)
93 smart00650 rADc Ribosomal RNA 99.2 3E-10 6.5E-15 95.5 13.7 117 157-284 4-120 (169)
94 TIGR00406 prmA ribosomal prote 99.2 2.9E-10 6.3E-15 103.8 14.0 103 165-275 158-260 (288)
95 TIGR03533 L3_gln_methyl protei 99.2 3.5E-10 7.6E-15 103.0 14.2 77 165-244 120-196 (284)
96 PRK13943 protein-L-isoaspartat 99.2 3.1E-10 6.8E-15 104.6 13.6 108 156-272 70-178 (322)
97 KOG1271 Methyltransferases [Ge 99.2 2.4E-10 5.2E-15 94.4 11.2 103 168-275 69-179 (227)
98 PHA03411 putative methyltransf 99.2 3.5E-10 7.6E-15 100.9 13.2 95 146-251 46-140 (279)
99 KOG1541 Predicted protein carb 99.2 2.1E-10 4.6E-15 97.5 10.7 100 166-275 50-161 (270)
100 PF01135 PCMT: Protein-L-isoas 99.2 1.7E-10 3.7E-15 100.0 10.4 109 155-275 61-170 (209)
101 COG4123 Predicted O-methyltran 99.2 3.7E-10 8.1E-15 99.3 12.5 117 157-275 35-171 (248)
102 cd02440 AdoMet_MTases S-adenos 99.2 4.3E-10 9.4E-15 84.7 11.3 100 169-272 1-102 (107)
103 PRK11805 N5-glutamine S-adenos 99.1 1.1E-09 2.5E-14 100.6 14.7 75 167-244 134-208 (307)
104 PF05724 TPMT: Thiopurine S-me 99.1 7.5E-10 1.6E-14 96.7 12.0 117 156-274 27-155 (218)
105 COG2813 RsmC 16S RNA G1207 met 99.1 1.4E-09 3E-14 97.7 13.6 117 154-275 146-267 (300)
106 TIGR00438 rrmJ cell division p 99.1 8.2E-10 1.8E-14 94.5 11.7 106 161-280 27-152 (188)
107 TIGR00563 rsmB ribosomal RNA s 99.1 1.4E-09 3E-14 104.6 14.2 122 152-275 224-369 (426)
108 COG2519 GCD14 tRNA(1-methylade 99.1 1.7E-09 3.8E-14 94.5 13.2 119 155-281 83-202 (256)
109 PRK14901 16S rRNA methyltransf 99.1 1.5E-09 3.3E-14 104.6 14.1 117 152-271 238-381 (434)
110 PRK00517 prmA ribosomal protei 99.1 1.3E-09 2.8E-14 97.5 12.5 96 165-274 118-213 (250)
111 PRK10901 16S rRNA methyltransf 99.1 2.4E-09 5.1E-14 103.1 14.8 116 155-274 233-372 (427)
112 COG4976 Predicted methyltransf 99.1 8.9E-11 1.9E-15 100.3 4.2 119 146-278 106-226 (287)
113 PRK09328 N5-glutamine S-adenos 99.1 2.6E-09 5.7E-14 96.6 13.9 85 156-244 98-182 (275)
114 PF02390 Methyltransf_4: Putat 99.1 1.7E-09 3.8E-14 92.9 11.9 95 168-270 19-129 (195)
115 PTZ00146 fibrillarin; Provisio 99.1 2.1E-09 4.6E-14 96.9 12.8 103 163-273 129-236 (293)
116 PRK14966 unknown domain/N5-glu 99.1 3.8E-09 8.2E-14 99.7 14.9 76 166-245 251-327 (423)
117 COG2264 PrmA Ribosomal protein 99.0 2.6E-09 5.5E-14 96.5 11.4 110 155-273 153-262 (300)
118 PRK03522 rumB 23S rRNA methylu 99.0 1.6E-09 3.5E-14 100.1 10.5 110 155-275 162-272 (315)
119 PRK00811 spermidine synthase; 99.0 3.4E-09 7.4E-14 96.4 11.9 108 165-272 75-189 (283)
120 KOG2361 Predicted methyltransf 99.0 6.9E-10 1.5E-14 95.7 6.7 107 168-282 73-188 (264)
121 PRK14903 16S rRNA methyltransf 99.0 5.7E-09 1.2E-13 100.4 13.7 114 154-270 225-362 (431)
122 PRK04457 spermidine synthase; 99.0 4.1E-09 8.9E-14 94.8 11.9 109 164-275 64-178 (262)
123 TIGR00446 nop2p NOL1/NOP2/sun 99.0 5.1E-09 1.1E-13 94.4 12.2 83 158-243 63-146 (264)
124 TIGR03704 PrmC_rel_meth putati 99.0 1.2E-08 2.6E-13 91.2 14.5 73 167-245 87-161 (251)
125 PRK01544 bifunctional N5-gluta 99.0 9.9E-09 2.2E-13 100.6 14.7 76 166-244 138-213 (506)
126 PRK14902 16S rRNA methyltransf 99.0 6.9E-09 1.5E-13 100.4 13.1 112 155-270 239-375 (444)
127 PF08704 GCD14: tRNA methyltra 99.0 1E-08 2.2E-13 90.8 12.9 116 154-276 28-148 (247)
128 PF00891 Methyltransf_2: O-met 99.0 9.3E-09 2E-13 91.4 12.4 97 158-267 92-190 (241)
129 PRK00274 ksgA 16S ribosomal RN 99.0 4.1E-09 8.9E-14 95.4 10.2 84 154-245 30-113 (272)
130 PRK14904 16S rRNA methyltransf 99.0 1.4E-08 3.1E-13 98.2 14.4 84 156-243 240-324 (445)
131 PRK13168 rumA 23S rRNA m(5)U19 98.9 6.4E-09 1.4E-13 100.6 11.9 85 155-244 286-374 (443)
132 PHA03412 putative methyltransf 98.9 8.5E-09 1.8E-13 90.1 11.3 92 146-248 31-125 (241)
133 PF03291 Pox_MCEL: mRNA cappin 98.9 1.8E-08 3.8E-13 93.4 13.4 116 166-282 62-191 (331)
134 COG2263 Predicted RNA methylas 98.9 1.5E-08 3.4E-13 84.7 11.3 75 163-245 42-116 (198)
135 PRK14896 ksgA 16S ribosomal RN 98.9 1E-08 2.3E-13 92.1 11.1 84 155-247 18-101 (258)
136 PF06325 PrmA: Ribosomal prote 98.9 8E-09 1.7E-13 94.0 9.9 99 165-276 160-258 (295)
137 COG0220 Predicted S-adenosylme 98.9 1.7E-08 3.6E-13 88.5 11.0 110 159-271 41-161 (227)
138 PLN02781 Probable caffeoyl-CoA 98.9 3.7E-08 8.1E-13 87.2 13.5 112 153-269 55-173 (234)
139 TIGR00755 ksgA dimethyladenosi 98.9 3.8E-08 8.2E-13 88.2 13.2 109 155-278 18-130 (253)
140 PF05148 Methyltransf_8: Hypot 98.8 1.6E-08 3.5E-13 86.1 9.2 129 120-274 28-158 (219)
141 PRK10909 rsmD 16S rRNA m(2)G96 98.8 1.4E-07 2.9E-12 81.4 15.0 118 156-279 42-161 (199)
142 KOG3045 Predicted RNA methylas 98.8 5E-08 1.1E-12 85.1 11.6 133 115-275 131-265 (325)
143 PRK04148 hypothetical protein; 98.8 8.5E-08 1.8E-12 76.7 11.9 97 156-270 6-104 (134)
144 PTZ00338 dimethyladenosine tra 98.8 3.3E-08 7.2E-13 90.2 10.8 85 155-245 25-109 (294)
145 KOG1500 Protein arginine N-met 98.8 1.6E-08 3.4E-13 91.1 8.2 148 165-318 176-336 (517)
146 PF05219 DREV: DREV methyltran 98.8 4.1E-08 9E-13 86.3 10.6 92 166-271 94-185 (265)
147 PRK01581 speE spermidine synth 98.8 3.8E-08 8.1E-13 91.3 10.8 108 165-272 149-266 (374)
148 TIGR00417 speE spermidine synt 98.8 7.6E-08 1.7E-12 87.1 12.6 108 166-273 72-185 (270)
149 COG3963 Phospholipid N-methylt 98.8 2.2E-07 4.8E-12 76.0 13.3 121 148-276 30-158 (194)
150 COG2890 HemK Methylase of poly 98.8 6.2E-08 1.3E-12 87.9 10.9 72 169-245 113-184 (280)
151 PLN02366 spermidine synthase 98.7 1.1E-07 2.4E-12 87.3 12.2 107 165-271 90-203 (308)
152 TIGR00479 rumA 23S rRNA (uraci 98.7 1E-07 2.2E-12 91.9 12.6 85 155-244 281-369 (431)
153 PRK03612 spermidine synthase; 98.7 6.6E-08 1.4E-12 95.2 10.3 108 165-272 296-413 (521)
154 KOG2940 Predicted methyltransf 98.7 1.8E-08 4E-13 86.3 5.2 104 166-275 72-175 (325)
155 PF10294 Methyltransf_16: Puta 98.7 2.4E-07 5.1E-12 78.2 11.5 105 164-269 43-151 (173)
156 PRK11783 rlmL 23S rRNA m(2)G24 98.7 9.8E-08 2.1E-12 97.2 10.8 103 166-270 538-652 (702)
157 TIGR02085 meth_trns_rumB 23S r 98.7 1.4E-07 3E-12 89.3 10.4 86 156-246 223-309 (374)
158 PLN02476 O-methyltransferase 98.7 5.4E-07 1.2E-11 81.2 13.5 113 155-275 107-226 (278)
159 PF05185 PRMT5: PRMT5 arginine 98.6 3.5E-07 7.5E-12 88.1 12.4 103 167-275 187-295 (448)
160 KOG1975 mRNA cap methyltransfe 98.6 2E-07 4.3E-12 83.8 9.9 108 165-276 116-236 (389)
161 PRK15128 23S rRNA m(5)C1962 me 98.6 2.2E-07 4.7E-12 88.3 10.8 79 165-245 219-301 (396)
162 KOG1499 Protein arginine N-met 98.6 1.4E-07 3.1E-12 86.0 9.0 79 164-246 58-136 (346)
163 PRK01544 bifunctional N5-gluta 98.6 2E-07 4.3E-12 91.5 10.4 104 165-271 346-459 (506)
164 PF01596 Methyltransf_3: O-met 98.6 2.9E-07 6.2E-12 79.7 10.2 112 156-275 35-153 (205)
165 PLN02672 methionine S-methyltr 98.6 2.1E-07 4.6E-12 97.3 11.0 79 167-245 119-211 (1082)
166 COG4122 Predicted O-methyltran 98.6 3.8E-07 8.3E-12 79.1 10.8 111 154-269 47-161 (219)
167 KOG3420 Predicted RNA methylas 98.6 1.1E-07 2.4E-12 75.9 6.7 82 162-248 44-125 (185)
168 PRK10611 chemotaxis methyltran 98.6 5.4E-07 1.2E-11 81.8 11.8 123 147-269 95-257 (287)
169 PF01170 UPF0020: Putative RNA 98.6 5.7E-07 1.2E-11 76.3 10.6 110 155-266 17-143 (179)
170 PF06080 DUF938: Protein of un 98.6 9.5E-07 2.1E-11 75.6 11.8 121 154-280 14-145 (204)
171 COG1041 Predicted DNA modifica 98.6 7.3E-07 1.6E-11 81.8 11.6 117 154-275 185-311 (347)
172 PRK11727 23S rRNA mA1618 methy 98.5 9.3E-07 2E-11 81.4 11.9 82 166-249 114-201 (321)
173 KOG2899 Predicted methyltransf 98.5 6.3E-07 1.4E-11 77.6 10.0 47 166-212 58-104 (288)
174 PF01739 CheR: CheR methyltran 98.5 1.5E-06 3.3E-11 74.6 12.5 111 166-277 31-175 (196)
175 PF05891 Methyltransf_PK: AdoM 98.5 7.1E-07 1.5E-11 76.8 8.9 106 166-276 55-160 (218)
176 PF12147 Methyltransf_20: Puta 98.5 4.4E-06 9.6E-11 74.6 14.2 110 164-276 133-248 (311)
177 TIGR00095 RNA methyltransferas 98.5 4.3E-06 9.3E-11 71.6 13.7 109 165-278 48-160 (189)
178 PRK04338 N(2),N(2)-dimethylgua 98.5 1.3E-06 2.8E-11 82.7 11.4 100 167-273 58-157 (382)
179 COG0030 KsgA Dimethyladenosine 98.5 1.2E-06 2.6E-11 77.8 10.4 84 155-245 19-103 (259)
180 KOG1269 SAM-dependent methyltr 98.5 7.8E-07 1.7E-11 83.2 9.3 106 165-273 109-214 (364)
181 PLN02589 caffeoyl-CoA O-methyl 98.4 2.4E-06 5.2E-11 75.9 11.5 114 154-275 67-188 (247)
182 KOG1661 Protein-L-isoaspartate 98.4 2.5E-06 5.4E-11 72.5 10.8 111 156-272 70-191 (237)
183 PRK00050 16S rRNA m(4)C1402 me 98.4 8E-07 1.7E-11 80.9 8.4 95 156-255 9-110 (296)
184 PF03141 Methyltransf_29: Puta 98.4 2.8E-07 6E-12 87.8 5.4 106 152-269 99-214 (506)
185 KOG1331 Predicted methyltransf 98.4 3E-07 6.6E-12 81.6 4.7 97 165-275 44-144 (293)
186 KOG2904 Predicted methyltransf 98.4 2.3E-06 5E-11 75.5 10.1 89 155-245 134-230 (328)
187 KOG0820 Ribosomal RNA adenine 98.4 3.2E-06 7E-11 74.5 9.9 84 156-245 48-131 (315)
188 PLN02823 spermine synthase 98.3 5.4E-06 1.2E-10 77.0 11.4 105 166-271 103-217 (336)
189 PF02475 Met_10: Met-10+ like- 98.3 4.1E-06 8.8E-11 72.1 9.5 97 165-268 100-196 (200)
190 TIGR00478 tly hemolysin TlyA f 98.3 8.5E-06 1.8E-10 71.6 11.7 85 165-266 74-164 (228)
191 TIGR02143 trmA_only tRNA (urac 98.3 2.1E-06 4.5E-11 80.6 7.8 70 155-230 187-256 (353)
192 COG2521 Predicted archaeal met 98.3 1.1E-06 2.4E-11 75.8 5.0 114 162-278 130-249 (287)
193 PRK05031 tRNA (uracil-5-)-meth 98.3 2.1E-06 4.5E-11 81.0 7.4 70 155-230 196-265 (362)
194 COG0421 SpeE Spermidine syntha 98.3 8.7E-06 1.9E-10 73.7 11.0 104 168-273 78-189 (282)
195 PF00398 RrnaAD: Ribosomal RNA 98.3 2.3E-05 4.9E-10 70.7 13.7 118 155-282 19-139 (262)
196 KOG3191 Predicted N6-DNA-methy 98.2 4E-05 8.6E-10 63.9 12.2 113 164-281 41-175 (209)
197 PF02384 N6_Mtase: N-6 DNA Met 98.2 1.2E-05 2.7E-10 74.1 10.3 129 146-275 26-184 (311)
198 COG0500 SmtA SAM-dependent met 98.2 3.2E-05 7E-10 61.7 11.5 101 170-275 52-156 (257)
199 PF03602 Cons_hypoth95: Conser 98.2 1.2E-05 2.5E-10 68.5 8.9 125 151-280 25-156 (183)
200 COG1352 CheR Methylase of chem 98.1 5.5E-05 1.2E-09 67.9 13.4 104 167-270 97-237 (268)
201 PF02527 GidB: rRNA small subu 98.1 2.8E-05 6.1E-10 66.1 10.6 92 169-268 51-142 (184)
202 PF13679 Methyltransf_32: Meth 98.1 1.9E-05 4.2E-10 64.2 9.1 82 165-248 24-110 (141)
203 COG2265 TrmA SAM-dependent met 98.1 1.3E-05 2.8E-10 76.9 9.2 85 154-243 281-368 (432)
204 PF09445 Methyltransf_15: RNA 98.1 4.8E-06 1.1E-10 69.0 5.2 72 169-244 2-76 (163)
205 PRK11827 hypothetical protein; 98.1 1.5E-06 3.3E-11 59.0 1.8 45 58-111 6-50 (60)
206 PF05958 tRNA_U5-meth_tr: tRNA 98.1 1.6E-05 3.4E-10 74.7 9.0 71 154-230 185-255 (352)
207 TIGR03439 methyl_EasF probable 98.1 0.00014 3E-09 67.1 15.0 105 165-275 75-195 (319)
208 PF11968 DUF3321: Putative met 98.1 1.9E-05 4.1E-10 67.9 8.5 87 168-275 53-150 (219)
209 PF09243 Rsm22: Mitochondrial 98.1 3.8E-05 8.2E-10 69.6 11.0 104 158-267 25-131 (274)
210 COG2835 Uncharacterized conser 98.1 2.5E-06 5.5E-11 57.3 2.4 44 58-110 6-49 (60)
211 PRK11933 yebU rRNA (cytosine-C 98.1 5.6E-05 1.2E-09 73.3 12.6 84 157-243 102-189 (470)
212 PF08123 DOT1: Histone methyla 98.0 2.2E-05 4.9E-10 67.9 8.5 115 157-275 33-156 (205)
213 KOG3178 Hydroxyindole-O-methyl 98.0 3.2E-05 7E-10 70.9 9.6 95 168-275 179-273 (342)
214 KOG2915 tRNA(1-methyladenosine 98.0 9.9E-05 2.2E-09 65.3 12.2 107 155-268 94-203 (314)
215 COG4076 Predicted RNA methylas 98.0 1.5E-05 3.3E-10 66.6 6.6 107 161-275 27-133 (252)
216 KOG2352 Predicted spermine/spe 98.0 0.00011 2.3E-09 70.2 12.5 103 168-275 50-162 (482)
217 PRK00536 speE spermidine synth 97.9 9.6E-05 2.1E-09 66.2 11.1 98 165-272 71-169 (262)
218 COG0742 N6-adenine-specific me 97.9 0.0003 6.6E-09 59.4 13.1 126 151-280 26-157 (187)
219 PF01564 Spermine_synth: Sperm 97.9 3.4E-05 7.4E-10 68.8 7.9 110 165-274 75-191 (246)
220 TIGR02987 met_A_Alw26 type II 97.9 0.00014 3.1E-09 72.0 12.8 96 147-245 5-120 (524)
221 PF07942 N2227: N2227-like pro 97.9 0.00015 3.3E-09 65.0 11.6 101 166-268 56-196 (270)
222 COG2520 Predicted methyltransf 97.9 0.00016 3.5E-09 66.9 11.3 106 156-270 180-285 (341)
223 COG1092 Predicted SAM-dependen 97.8 0.00011 2.4E-09 69.4 9.6 106 166-273 217-335 (393)
224 TIGR01444 fkbM_fam methyltrans 97.8 7.8E-05 1.7E-09 60.4 7.5 59 169-230 1-59 (143)
225 TIGR00308 TRM1 tRNA(guanine-26 97.8 0.00021 4.6E-09 67.4 11.3 100 167-273 45-146 (374)
226 COG0116 Predicted N6-adenine-s 97.8 0.00036 7.9E-09 65.1 12.5 120 155-276 180-343 (381)
227 KOG1663 O-methyltransferase [S 97.8 0.00064 1.4E-08 58.9 12.8 120 148-275 55-181 (237)
228 COG0357 GidB Predicted S-adeno 97.8 0.00043 9.3E-09 60.1 11.7 97 167-270 68-164 (215)
229 COG0293 FtsJ 23S rRNA methylas 97.8 0.00024 5.1E-09 61.0 9.8 110 164-287 43-172 (205)
230 KOG2187 tRNA uracil-5-methyltr 97.7 4.4E-05 9.6E-10 73.0 5.4 75 152-231 369-443 (534)
231 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00041 8.9E-09 71.0 12.8 79 165-245 189-311 (702)
232 PF01728 FtsJ: FtsJ-like methy 97.7 1.7E-05 3.6E-10 67.3 2.2 97 166-276 23-141 (181)
233 PF03966 Trm112p: Trm112p-like 97.7 2.1E-05 4.6E-10 55.6 2.0 47 56-102 3-68 (68)
234 PRK11760 putative 23S rRNA C24 97.7 0.00055 1.2E-08 63.1 11.2 94 165-275 210-303 (357)
235 PF10672 Methyltrans_SAM: S-ad 97.6 0.00066 1.4E-08 61.7 10.2 109 165-275 122-236 (286)
236 PF04816 DUF633: Family of unk 97.6 0.00027 5.9E-09 61.1 7.4 74 170-246 1-75 (205)
237 COG0144 Sun tRNA and rRNA cyto 97.5 0.0017 3.7E-08 61.0 13.1 87 154-243 144-235 (355)
238 TIGR00006 S-adenosyl-methyltra 97.5 0.00068 1.5E-08 62.0 10.0 87 155-245 9-100 (305)
239 COG3897 Predicted methyltransf 97.5 0.0005 1.1E-08 58.1 8.3 97 164-268 77-173 (218)
240 KOG3987 Uncharacterized conser 97.5 3.8E-05 8.3E-10 65.2 1.7 87 166-266 112-198 (288)
241 KOG2730 Methylase [General fun 97.4 0.00033 7.2E-09 60.2 5.8 77 166-246 94-174 (263)
242 COG2384 Predicted SAM-dependen 97.3 0.002 4.4E-08 55.5 9.9 86 156-246 8-94 (226)
243 PF04672 Methyltransf_19: S-ad 97.3 0.0025 5.4E-08 57.0 10.5 102 167-273 69-189 (267)
244 KOG3115 Methyltransferase-like 97.2 0.0013 2.9E-08 55.8 7.3 103 166-273 60-182 (249)
245 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.0037 8.1E-08 56.9 10.8 118 155-275 74-217 (283)
246 KOG1709 Guanidinoacetate methy 97.2 0.0041 8.8E-08 53.4 9.8 104 165-273 100-205 (271)
247 PF03059 NAS: Nicotianamine sy 97.1 0.014 2.9E-07 52.8 13.5 101 167-268 121-224 (276)
248 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.0012 2.5E-08 59.0 6.4 109 165-275 55-197 (256)
249 PRK10742 putative methyltransf 97.1 0.0036 7.8E-08 55.4 9.2 93 156-250 76-177 (250)
250 KOG4058 Uncharacterized conser 97.1 0.0018 3.9E-08 52.2 6.3 100 151-255 57-156 (199)
251 KOG3201 Uncharacterized conser 97.0 0.00054 1.2E-08 56.1 3.0 104 166-269 29-135 (201)
252 PF05971 Methyltransf_10: Prot 97.0 0.0042 9E-08 56.6 9.0 94 155-251 86-191 (299)
253 KOG4589 Cell division protein 96.9 0.0035 7.5E-08 52.7 7.1 68 164-245 67-144 (232)
254 PF07091 FmrO: Ribosomal RNA m 96.9 0.0039 8.4E-08 55.0 7.8 82 165-251 104-185 (251)
255 PF01269 Fibrillarin: Fibrilla 96.9 0.024 5.1E-07 49.3 12.0 106 163-275 70-179 (229)
256 COG1189 Predicted rRNA methyla 96.8 0.018 3.8E-07 50.4 10.5 97 164-273 77-177 (245)
257 COG4262 Predicted spermidine s 96.7 0.013 2.8E-07 54.2 9.7 78 167-244 290-372 (508)
258 PF01795 Methyltransf_5: MraW 96.7 0.0049 1.1E-07 56.4 6.8 85 156-244 10-100 (310)
259 PF13578 Methyltransf_24: Meth 96.6 0.0017 3.7E-08 49.8 2.6 99 171-276 1-104 (106)
260 PF07757 AdoMet_MTase: Predict 96.5 0.0034 7.3E-08 48.0 4.0 33 165-199 57-89 (112)
261 PRK09678 DNA-binding transcrip 96.4 0.0019 4.1E-08 45.8 1.9 48 60-108 1-50 (72)
262 KOG2798 Putative trehalase [Ca 96.4 0.026 5.6E-07 51.3 9.2 104 166-271 150-293 (369)
263 COG0275 Predicted S-adenosylme 96.2 0.042 9.2E-07 49.8 9.7 87 155-245 12-104 (314)
264 PF04445 SAM_MT: Putative SAM- 96.1 0.023 4.9E-07 50.0 7.3 92 156-249 63-163 (234)
265 TIGR01206 lysW lysine biosynth 96.0 0.0082 1.8E-07 40.1 3.3 31 60-97 2-32 (54)
266 PF13719 zinc_ribbon_5: zinc-r 96.0 0.0039 8.5E-08 38.3 1.4 35 60-98 2-36 (37)
267 PRK11524 putative methyltransf 95.9 0.035 7.6E-07 50.6 8.0 56 154-212 197-252 (284)
268 PF10571 UPF0547: Uncharacteri 95.9 0.0046 1E-07 34.7 1.3 24 62-98 2-25 (26)
269 COG0286 HsdM Type I restrictio 95.9 0.041 8.8E-07 54.1 8.8 145 129-275 144-327 (489)
270 PF08274 PhnA_Zn_Ribbon: PhnA 95.8 0.0051 1.1E-07 35.8 1.2 27 61-97 3-29 (30)
271 PRK00420 hypothetical protein; 95.7 0.0063 1.4E-07 47.0 2.0 31 61-101 24-54 (112)
272 PF02636 Methyltransf_28: Puta 95.7 0.035 7.7E-07 49.6 7.1 80 167-251 19-109 (252)
273 COG1645 Uncharacterized Zn-fin 95.6 0.0065 1.4E-07 48.0 1.6 25 62-97 30-54 (131)
274 PRK13699 putative methylase; P 95.5 0.064 1.4E-06 47.2 8.0 59 151-212 149-207 (227)
275 PF01555 N6_N4_Mtase: DNA meth 95.5 0.048 1E-06 47.2 7.3 55 151-208 177-231 (231)
276 PF04989 CmcI: Cephalosporin h 95.4 0.075 1.6E-06 45.8 7.6 108 157-268 23-141 (206)
277 COG4798 Predicted methyltransf 95.2 0.07 1.5E-06 45.3 6.6 108 160-275 42-167 (238)
278 PF13717 zinc_ribbon_4: zinc-r 95.1 0.013 2.8E-07 35.7 1.6 34 60-97 2-35 (36)
279 cd00315 Cyt_C5_DNA_methylase C 95.1 0.18 3.9E-06 45.7 9.7 102 169-280 2-115 (275)
280 COG4627 Uncharacterized protei 95.1 0.0048 1E-07 50.3 -0.5 56 220-275 30-87 (185)
281 PF14803 Nudix_N_2: Nudix N-te 95.1 0.014 3E-07 35.1 1.5 30 63-97 3-32 (34)
282 KOG1501 Arginine N-methyltrans 94.9 0.073 1.6E-06 50.5 6.6 60 169-231 69-128 (636)
283 COG1889 NOP1 Fibrillarin-like 94.9 0.46 9.9E-06 40.8 10.7 102 163-274 73-180 (231)
284 PHA00626 hypothetical protein 94.9 0.018 3.9E-07 38.1 1.8 33 61-98 1-34 (59)
285 PF03141 Methyltransf_29: Puta 94.7 0.063 1.4E-06 51.9 5.6 93 166-269 365-462 (506)
286 PHA01634 hypothetical protein 94.5 0.29 6.2E-06 38.8 8.0 47 165-212 27-73 (156)
287 PF06962 rRNA_methylase: Putat 94.5 0.2 4.3E-06 40.5 7.3 82 192-275 1-90 (140)
288 PF08792 A2L_zn_ribbon: A2L zi 94.4 0.034 7.3E-07 33.2 2.1 30 59-98 2-32 (33)
289 COG1997 RPL43A Ribosomal prote 94.3 0.026 5.6E-07 41.1 1.8 30 59-97 34-63 (89)
290 PRK00464 nrdR transcriptional 94.3 0.026 5.6E-07 46.4 1.9 38 61-99 1-40 (154)
291 KOG2793 Putative N2,N2-dimethy 94.2 0.59 1.3E-05 41.6 10.5 101 166-268 86-193 (248)
292 PF04606 Ogr_Delta: Ogr/Delta- 94.2 0.026 5.7E-07 36.6 1.5 39 62-101 1-41 (47)
293 PF11781 RRN7: RNA polymerase 94.2 0.027 5.9E-07 34.3 1.3 27 60-96 8-34 (36)
294 COG5459 Predicted rRNA methyla 94.0 0.088 1.9E-06 48.7 4.9 114 158-275 105-223 (484)
295 TIGR02098 MJ0042_CXXC MJ0042 f 93.9 0.029 6.3E-07 34.5 1.2 35 60-98 2-36 (38)
296 PF01096 TFIIS_C: Transcriptio 93.9 0.026 5.6E-07 35.1 0.9 37 61-97 1-38 (39)
297 PRK00432 30S ribosomal protein 93.9 0.039 8.5E-07 36.3 1.8 33 55-97 15-47 (50)
298 PF08271 TF_Zn_Ribbon: TFIIB z 93.9 0.035 7.7E-07 35.2 1.5 29 61-97 1-29 (43)
299 PF09297 zf-NADH-PPase: NADH p 93.7 0.049 1.1E-06 32.2 1.9 27 62-97 5-31 (32)
300 KOG1088 Uncharacterized conser 93.7 0.031 6.8E-07 42.9 1.2 26 83-108 94-119 (124)
301 COG1867 TRM1 N2,N2-dimethylgua 93.7 0.42 9.2E-06 44.6 8.8 100 167-273 53-153 (380)
302 PRK10220 hypothetical protein; 93.6 0.05 1.1E-06 41.3 2.2 31 60-100 3-33 (111)
303 TIGR00686 phnA alkylphosphonat 93.6 0.041 8.8E-07 41.8 1.7 31 60-100 2-32 (109)
304 PRK00398 rpoP DNA-directed RNA 93.5 0.072 1.6E-06 34.3 2.5 29 60-97 3-31 (46)
305 COG1565 Uncharacterized conser 93.4 0.3 6.6E-06 45.5 7.4 49 164-212 75-131 (370)
306 cd08283 FDH_like_1 Glutathione 93.4 1 2.2E-05 42.7 11.4 103 162-273 180-305 (386)
307 COG1063 Tdh Threonine dehydrog 93.4 1 2.2E-05 42.3 11.2 96 165-275 167-270 (350)
308 PF11599 AviRa: RRNA methyltra 93.2 0.17 3.7E-06 43.7 5.0 49 163-211 48-98 (246)
309 COG3129 Predicted SAM-dependen 93.2 0.42 9.1E-06 41.8 7.3 99 149-250 55-166 (292)
310 PF14446 Prok-RING_1: Prokaryo 93.1 0.056 1.2E-06 35.9 1.6 26 61-97 6-31 (54)
311 smart00440 ZnF_C2C2 C2C2 Zinc 93.0 0.057 1.2E-06 33.7 1.4 38 61-98 1-39 (40)
312 KOG1099 SAM-dependent methyltr 93.0 0.18 4E-06 43.9 4.9 97 168-278 43-167 (294)
313 COG1656 Uncharacterized conser 93.0 0.043 9.3E-07 45.1 1.1 41 57-97 94-140 (165)
314 PRK09424 pntA NAD(P) transhydr 92.9 1.2 2.7E-05 43.9 11.1 101 164-275 162-286 (509)
315 KOG2671 Putative RNA methylase 92.8 0.11 2.4E-06 47.8 3.6 90 151-243 192-290 (421)
316 PF09862 DUF2089: Protein of u 92.6 0.055 1.2E-06 41.9 1.1 22 63-97 1-22 (113)
317 KOG0822 Protein kinase inhibit 92.4 0.7 1.5E-05 45.1 8.5 103 167-275 368-476 (649)
318 PF03119 DNA_ligase_ZBD: NAD-d 92.4 0.091 2E-06 30.1 1.6 22 62-92 1-22 (28)
319 PF01861 DUF43: Protein of unk 92.2 6.1 0.00013 34.9 13.5 75 165-244 43-119 (243)
320 PF13240 zinc_ribbon_2: zinc-r 92.2 0.07 1.5E-06 29.0 0.9 22 62-96 1-22 (23)
321 smart00661 RPOL9 RNA polymeras 92.2 0.14 3E-06 33.7 2.6 34 62-102 2-35 (52)
322 KOG2198 tRNA cytosine-5-methyl 92.2 1.6 3.5E-05 40.8 10.3 113 161-276 150-295 (375)
323 PF07191 zinc-ribbons_6: zinc- 92.2 0.088 1.9E-06 36.9 1.6 26 61-97 2-27 (70)
324 COG4306 Uncharacterized protei 92.2 0.041 8.9E-07 42.8 -0.1 44 58-101 37-82 (160)
325 PF01780 Ribosomal_L37ae: Ribo 92.1 0.075 1.6E-06 39.3 1.3 30 59-97 34-63 (90)
326 KOG2691 RNA polymerase II subu 92.1 0.12 2.6E-06 39.1 2.4 46 52-98 64-112 (113)
327 PF14353 CpXC: CpXC protein 92.1 0.064 1.4E-06 42.7 1.0 40 61-100 2-51 (128)
328 PF04072 LCM: Leucine carboxyl 91.9 0.91 2E-05 38.4 7.9 98 156-255 67-174 (183)
329 smart00659 RPOLCX RNA polymera 91.8 0.15 3.2E-06 32.6 2.2 28 60-97 2-29 (44)
330 PF06677 Auto_anti-p27: Sjogre 91.6 0.12 2.7E-06 32.4 1.7 23 62-94 19-41 (41)
331 COG1198 PriA Primosomal protei 91.6 0.66 1.4E-05 47.6 7.7 94 168-264 484-584 (730)
332 COG3510 CmcI Cephalosporin hyd 91.5 1.3 2.9E-05 37.7 8.1 106 155-268 58-174 (237)
333 COG1064 AdhP Zn-dependent alco 91.3 1.4 3E-05 41.0 9.0 95 163-274 163-259 (339)
334 PF01927 Mut7-C: Mut7-C RNAse 91.0 0.17 3.7E-06 41.4 2.4 40 59-98 90-135 (147)
335 PF03604 DNA_RNApol_7kD: DNA d 90.9 0.19 4.2E-06 29.7 1.9 27 61-97 1-27 (32)
336 KOG1596 Fibrillarin and relate 90.7 0.54 1.2E-05 41.4 5.3 98 162-273 152-260 (317)
337 COG2888 Predicted Zn-ribbon RN 90.6 0.13 2.8E-06 34.7 1.1 36 57-96 24-59 (61)
338 PF02005 TRM: N2,N2-dimethylgu 90.5 0.92 2E-05 43.1 7.2 101 166-271 49-151 (377)
339 KOG1122 tRNA and rRNA cytosine 90.4 1.2 2.6E-05 42.3 7.7 78 162-243 237-318 (460)
340 PTZ00357 methyltransferase; Pr 90.4 2.3 5.1E-05 43.1 9.9 98 169-266 703-823 (1072)
341 PF13248 zf-ribbon_3: zinc-rib 90.2 0.14 3E-06 28.7 0.9 23 61-96 3-25 (26)
342 COG1255 Uncharacterized protei 90.2 2.2 4.9E-05 33.1 7.6 87 165-273 12-100 (129)
343 TIGR00595 priA primosomal prot 90.2 6 0.00013 39.1 12.9 33 168-200 262-294 (505)
344 COG1779 C4-type Zn-finger prot 90.1 0.19 4.2E-06 42.5 2.0 43 55-97 9-53 (201)
345 PF09538 FYDLN_acid: Protein o 89.4 0.22 4.7E-06 38.4 1.7 30 61-100 10-39 (108)
346 COG3809 Uncharacterized protei 89.3 0.2 4.4E-06 35.6 1.3 37 60-103 1-37 (88)
347 PRK05580 primosome assembly pr 89.2 6.7 0.00015 40.3 12.7 29 60-97 390-418 (679)
348 PRK14873 primosome assembly pr 89.1 2.2 4.7E-05 43.6 9.0 97 167-275 430-534 (665)
349 PTZ00255 60S ribosomal protein 89.1 0.21 4.6E-06 36.9 1.3 30 59-97 35-64 (90)
350 PF14205 Cys_rich_KTR: Cystein 89.0 0.42 9.1E-06 31.6 2.5 36 60-98 4-39 (55)
351 COG1571 Predicted DNA-binding 89.0 0.21 4.6E-06 47.4 1.7 30 62-101 352-381 (421)
352 PF07754 DUF1610: Domain of un 89.0 0.32 6.9E-06 26.7 1.6 24 63-95 1-24 (24)
353 PF02150 RNA_POL_M_15KD: RNA p 88.9 0.24 5.2E-06 29.9 1.3 32 61-100 2-33 (35)
354 KOG2651 rRNA adenine N-6-methy 88.6 1.6 3.6E-05 40.9 7.0 43 165-208 152-194 (476)
355 TIGR03655 anti_R_Lar restricti 88.5 0.39 8.4E-06 31.9 2.2 36 60-99 1-38 (53)
356 KOG1562 Spermidine synthase [A 88.5 1.5 3.2E-05 39.9 6.4 79 165-243 120-201 (337)
357 PF03514 GRAS: GRAS domain fam 88.3 1.6 3.5E-05 41.4 7.1 120 156-275 100-242 (374)
358 COG1594 RPB9 DNA-directed RNA 88.3 0.34 7.5E-06 37.7 2.1 50 49-98 61-111 (113)
359 PF05206 TRM13: Methyltransfer 88.0 1.7 3.7E-05 39.0 6.7 65 165-232 17-86 (259)
360 KOG2906 RNA polymerase III sub 88.0 0.29 6.3E-06 36.5 1.5 36 60-102 1-36 (105)
361 PF14354 Lar_restr_allev: Rest 87.6 0.43 9.2E-06 32.5 2.1 35 59-95 2-37 (61)
362 TIGR00280 L37a ribosomal prote 87.6 0.27 5.9E-06 36.4 1.1 30 59-97 34-63 (91)
363 KOG2539 Mitochondrial/chloropl 87.6 2 4.4E-05 41.4 7.1 108 165-275 199-313 (491)
364 PF11899 DUF3419: Protein of u 87.5 1.3 2.8E-05 42.1 5.9 55 156-212 25-79 (380)
365 COG3677 Transposase and inacti 87.5 0.31 6.8E-06 38.9 1.5 42 57-102 27-68 (129)
366 PRK14890 putative Zn-ribbon RN 87.3 0.34 7.3E-06 32.7 1.3 34 58-96 23-57 (59)
367 COG0777 AccD Acetyl-CoA carbox 87.2 0.36 7.9E-06 43.0 1.8 35 57-99 25-59 (294)
368 PRK03976 rpl37ae 50S ribosomal 87.1 0.29 6.3E-06 36.2 1.0 30 59-97 35-64 (90)
369 PF09986 DUF2225: Uncharacteri 87.0 0.39 8.4E-06 41.9 1.9 14 86-99 47-60 (214)
370 COG3877 Uncharacterized protei 86.9 0.3 6.6E-06 36.9 1.0 25 60-97 6-30 (122)
371 COG4888 Uncharacterized Zn rib 86.9 0.27 6E-06 36.8 0.8 34 57-97 19-56 (104)
372 TIGR00244 transcriptional regu 86.8 0.41 8.8E-06 38.8 1.8 41 61-102 1-43 (147)
373 PF03492 Methyltransf_7: SAM d 86.8 3.2 6.9E-05 38.8 8.0 87 165-251 15-121 (334)
374 COG1568 Predicted methyltransf 86.8 3.6 7.7E-05 37.2 7.8 85 165-262 151-238 (354)
375 PLN02668 indole-3-acetate carb 86.8 1.4 3E-05 41.9 5.6 86 167-252 64-177 (386)
376 PHA02998 RNA polymerase subuni 86.7 0.36 7.7E-06 40.1 1.4 39 59-97 142-181 (195)
377 COG1096 Predicted RNA-binding 86.4 0.46 1E-05 40.0 2.0 34 53-97 142-175 (188)
378 PRK09880 L-idonate 5-dehydroge 86.2 5.4 0.00012 36.9 9.4 95 164-273 167-265 (343)
379 PF07282 OrfB_Zn_ribbon: Putat 86.1 0.48 1E-05 33.2 1.7 29 60-97 28-56 (69)
380 COG1327 Predicted transcriptio 85.9 0.39 8.5E-06 38.9 1.3 41 61-102 1-43 (156)
381 TIGR02300 FYDLN_acid conserved 85.7 0.49 1.1E-05 37.2 1.7 29 61-99 10-38 (129)
382 PRK14892 putative transcriptio 85.7 0.7 1.5E-05 35.0 2.5 34 58-97 19-52 (99)
383 COG4301 Uncharacterized conser 85.6 16 0.00035 32.6 11.1 101 164-268 76-187 (321)
384 cd08254 hydroxyacyl_CoA_DH 6-h 85.6 14 0.00031 33.6 11.8 94 163-273 162-262 (338)
385 TIGR00027 mthyl_TIGR00027 meth 85.6 19 0.00041 32.3 12.1 114 156-275 72-195 (260)
386 PF05129 Elf1: Transcription e 85.5 0.4 8.8E-06 34.9 1.1 38 59-99 21-58 (81)
387 PF12760 Zn_Tnp_IS1595: Transp 85.4 0.66 1.4E-05 29.8 2.0 28 61-96 19-46 (46)
388 KOG2907 RNA polymerase I trans 85.1 0.41 8.9E-06 36.7 1.0 38 61-98 75-113 (116)
389 PRK05978 hypothetical protein; 84.9 0.65 1.4E-05 37.9 2.1 32 60-99 33-64 (148)
390 COG1326 Uncharacterized archae 84.7 0.55 1.2E-05 39.6 1.7 33 59-99 5-42 (201)
391 TIGR01385 TFSII transcription 84.5 0.58 1.3E-05 42.9 1.9 42 56-97 254-296 (299)
392 PF00145 DNA_methylase: C-5 cy 84.3 1.8 3.9E-05 39.6 5.2 101 169-281 2-115 (335)
393 COG5349 Uncharacterized protei 84.3 0.55 1.2E-05 36.5 1.3 30 60-97 21-50 (126)
394 PHA02768 hypothetical protein; 84.2 0.21 4.5E-06 33.4 -0.8 45 61-106 6-50 (55)
395 TIGR01384 TFS_arch transcripti 84.2 0.63 1.4E-05 35.5 1.7 27 62-99 2-28 (104)
396 KOG3507 DNA-directed RNA polym 84.1 1 2.3E-05 30.2 2.4 31 57-97 17-47 (62)
397 TIGR01384 TFS_arch transcripti 84.0 0.79 1.7E-05 34.9 2.2 44 55-98 57-101 (104)
398 TIGR00675 dcm DNA-methyltransf 83.9 5.3 0.00012 36.9 8.0 99 170-278 1-110 (315)
399 PRK12495 hypothetical protein; 83.8 0.62 1.3E-05 40.2 1.6 29 59-98 41-69 (226)
400 smart00531 TFIIE Transcription 83.4 0.58 1.3E-05 38.2 1.3 44 51-97 90-133 (147)
401 PF13453 zf-TFIIB: Transcripti 83.2 0.56 1.2E-05 29.3 0.9 30 62-98 1-30 (41)
402 PF12773 DZR: Double zinc ribb 82.9 0.91 2E-05 29.5 1.8 32 56-97 8-39 (50)
403 PRK06266 transcription initiat 82.8 0.46 1E-05 40.1 0.5 40 49-96 106-145 (178)
404 COG0863 DNA modification methy 82.8 5.7 0.00012 35.9 7.7 55 155-212 212-266 (302)
405 TIGR00373 conserved hypothetic 82.3 0.5 1.1E-05 39.1 0.5 37 52-96 101-137 (158)
406 PF09855 DUF2082: Nucleic-acid 82.2 0.88 1.9E-05 31.5 1.6 10 87-96 36-45 (64)
407 PF10083 DUF2321: Uncharacteri 81.8 0.23 5E-06 40.4 -1.6 48 59-106 38-87 (158)
408 PF05050 Methyltransf_21: Meth 81.6 3.3 7.1E-05 33.6 5.2 38 172-209 1-42 (167)
409 PF08996 zf-DNA_Pol: DNA Polym 81.6 1.1 2.5E-05 38.1 2.4 39 59-97 17-55 (188)
410 TIGR00561 pntA NAD(P) transhyd 81.5 7.4 0.00016 38.5 8.3 95 165-271 162-281 (511)
411 TIGR03831 YgiT_finger YgiT-typ 81.4 0.77 1.7E-05 29.1 1.0 12 87-98 32-43 (46)
412 COG2824 PhnA Uncharacterized Z 81.3 0.86 1.9E-05 34.5 1.4 29 60-98 3-31 (112)
413 KOG2782 Putative SAM dependent 80.8 1.1 2.4E-05 38.9 2.0 88 155-245 32-126 (303)
414 PF02254 TrkA_N: TrkA-N domain 80.5 4.6 0.0001 30.8 5.4 60 175-244 4-69 (116)
415 PRK10458 DNA cytosine methylas 80.5 12 0.00026 36.6 9.4 73 154-232 69-147 (467)
416 PRK12380 hydrogenase nickel in 80.4 1.1 2.4E-05 34.9 1.8 58 26-96 38-95 (113)
417 COG1996 RPC10 DNA-directed RNA 80.1 1.2 2.6E-05 29.0 1.6 30 59-97 5-34 (49)
418 cd00350 rubredoxin_like Rubred 79.6 1.4 3E-05 26.1 1.6 24 61-95 2-25 (33)
419 KOG0024 Sorbitol dehydrogenase 79.5 4.2 9.2E-05 37.5 5.4 91 163-269 166-268 (354)
420 TIGR00100 hypA hydrogenase nic 79.4 1.2 2.7E-05 34.7 1.8 63 27-102 39-102 (115)
421 TIGR00515 accD acetyl-CoA carb 79.3 0.34 7.4E-06 44.1 -1.6 31 60-98 26-56 (285)
422 KOG2920 Predicted methyltransf 78.9 1.5 3.2E-05 39.6 2.4 39 165-204 115-153 (282)
423 TIGR00340 zpr1_rel ZPR1-relate 78.9 1.2 2.7E-05 36.9 1.7 35 63-97 1-38 (163)
424 COG1592 Rubrerythrin [Energy p 78.7 1.3 2.8E-05 36.8 1.8 25 60-96 134-158 (166)
425 CHL00174 accD acetyl-CoA carbo 78.4 0.38 8.2E-06 43.8 -1.6 43 60-110 38-81 (296)
426 PRK01747 mnmC bifunctional tRN 77.6 12 0.00025 38.4 8.7 109 165-273 56-205 (662)
427 cd08237 ribitol-5-phosphate_DH 77.4 18 0.00038 33.5 9.3 94 164-274 161-256 (341)
428 PF04423 Rad50_zn_hook: Rad50 77.3 0.93 2E-05 30.1 0.5 11 62-72 22-32 (54)
429 COG4640 Predicted membrane pro 77.2 1.2 2.5E-05 41.8 1.2 28 60-100 1-28 (465)
430 PRK05654 acetyl-CoA carboxylas 77.0 0.44 9.6E-06 43.5 -1.5 31 60-98 27-57 (292)
431 PRK03681 hypA hydrogenase nick 77.0 1.6 3.5E-05 34.0 1.8 58 27-96 39-96 (114)
432 smart00778 Prim_Zn_Ribbon Zinc 76.8 2.4 5.2E-05 25.9 2.1 28 61-95 4-33 (37)
433 PF01783 Ribosomal_L32p: Ribos 76.8 3.4 7.3E-05 27.8 3.1 22 59-94 25-46 (56)
434 TIGR00497 hsdM type I restrict 76.7 46 0.00099 32.9 12.3 128 147-275 196-356 (501)
435 PRK00241 nudC NADH pyrophospha 76.5 2.2 4.8E-05 38.2 2.8 34 59-101 98-132 (256)
436 PF03269 DUF268: Caenorhabditi 76.4 2.7 6E-05 34.8 3.0 98 167-275 2-112 (177)
437 KOG1098 Putative SAM-dependent 76.4 4.5 9.8E-05 40.4 5.0 37 164-200 42-79 (780)
438 COG3478 Predicted nucleic-acid 76.3 2.6 5.6E-05 29.0 2.3 11 59-69 3-13 (68)
439 smart00834 CxxC_CXXC_SSSS Puta 75.8 2 4.4E-05 26.4 1.7 30 60-95 5-34 (41)
440 PF03686 UPF0146: Uncharacteri 75.6 14 0.0003 29.3 6.7 79 165-262 12-92 (127)
441 COG1998 RPS31 Ribosomal protei 75.6 1.9 4.2E-05 27.9 1.5 29 60-97 19-47 (51)
442 PF07279 DUF1442: Protein of u 75.0 56 0.0012 28.4 10.9 110 156-274 31-146 (218)
443 PF06044 DRP: Dam-replacing fa 74.5 1.5 3.2E-05 38.5 1.1 32 60-97 31-63 (254)
444 PF12692 Methyltransf_17: S-ad 74.5 5 0.00011 32.7 4.0 100 166-276 28-133 (160)
445 PF11789 zf-Nse: Zinc-finger o 74.2 2.3 5E-05 28.7 1.7 26 58-97 9-34 (57)
446 KOG3352 Cytochrome c oxidase, 74.2 2.7 5.8E-05 34.1 2.4 40 47-97 93-143 (153)
447 PRK03659 glutathione-regulated 73.3 18 0.00039 36.7 8.6 65 168-244 401-471 (601)
448 cd05188 MDR Medium chain reduc 73.1 50 0.0011 28.6 10.7 43 165-208 133-176 (271)
449 PRK03564 formate dehydrogenase 72.9 2.1 4.5E-05 39.4 1.7 36 59-98 186-223 (309)
450 COG2816 NPY1 NTP pyrophosphohy 72.7 3.4 7.4E-05 37.3 2.9 37 59-104 110-147 (279)
451 PF09526 DUF2387: Probable met 72.7 3 6.5E-05 29.5 2.1 34 62-102 10-45 (71)
452 TIGR00310 ZPR1_znf ZPR1 zinc f 72.4 1.7 3.6E-05 37.2 0.9 35 61-97 1-40 (192)
453 TIGR01562 FdhE formate dehydro 72.4 2.3 5E-05 39.0 1.9 36 58-98 182-221 (305)
454 PRK00564 hypA hydrogenase nick 72.2 2.2 4.7E-05 33.4 1.4 58 28-97 40-98 (117)
455 KOG3924 Putative protein methy 72.1 16 0.00035 34.6 7.3 115 156-275 182-306 (419)
456 PRK12286 rpmF 50S ribosomal pr 72.0 2.7 5.8E-05 28.4 1.6 25 57-95 24-48 (57)
457 TIGR02443 conserved hypothetic 72.0 3.5 7.6E-05 27.9 2.2 32 62-100 11-44 (59)
458 PF05711 TylF: Macrocin-O-meth 71.5 20 0.00043 32.0 7.5 116 159-280 67-215 (248)
459 PF03811 Zn_Tnp_IS1: InsA N-te 71.4 4.5 9.8E-05 24.5 2.4 30 60-94 5-36 (36)
460 cd04476 RPA1_DBD_C RPA1_DBD_C: 71.0 3.1 6.7E-05 34.5 2.2 29 59-97 33-61 (166)
461 PRK03824 hypA hydrogenase nick 70.7 2.7 5.9E-05 33.8 1.7 39 57-96 67-116 (135)
462 COG0287 TyrA Prephenate dehydr 70.7 18 0.00038 32.9 7.2 92 168-273 4-97 (279)
463 COG3315 O-Methyltransferase in 70.6 59 0.0013 29.8 10.6 117 156-276 83-208 (297)
464 COG0270 Dcm Site-specific DNA 70.6 13 0.00029 34.4 6.6 94 167-269 3-109 (328)
465 cd08232 idonate-5-DH L-idonate 70.6 26 0.00057 32.0 8.6 92 165-271 164-259 (339)
466 PRK08213 gluconate 5-dehydroge 70.4 64 0.0014 28.1 10.8 76 165-247 10-99 (259)
467 COG0675 Transposase and inacti 70.4 2.3 5.1E-05 39.1 1.5 24 60-97 309-332 (364)
468 cd08230 glucose_DH Glucose deh 70.4 29 0.00062 32.2 8.9 90 164-271 170-266 (355)
469 TIGR01031 rpmF_bact ribosomal 70.2 2.8 6.1E-05 28.1 1.4 23 58-94 24-46 (55)
470 COG2051 RPS27A Ribosomal prote 70.1 3.9 8.5E-05 28.3 2.1 31 60-99 19-50 (67)
471 PF13639 zf-RING_2: Ring finge 69.6 3 6.5E-05 26.2 1.4 24 62-97 2-25 (44)
472 smart00709 Zpr1 Duplicated dom 69.5 3 6.4E-05 34.6 1.8 34 62-97 2-39 (160)
473 PF09889 DUF2116: Uncharacteri 68.9 0.87 1.9E-05 31.0 -1.3 23 62-97 5-28 (59)
474 PRK08665 ribonucleotide-diphos 68.9 2.6 5.6E-05 43.8 1.5 24 62-96 726-749 (752)
475 PF00301 Rubredoxin: Rubredoxi 68.6 5.2 0.00011 25.9 2.4 34 61-95 2-42 (47)
476 KOG2078 tRNA modification enzy 68.3 3.3 7.2E-05 39.5 2.0 46 165-212 248-293 (495)
477 KOG2906 RNA polymerase III sub 68.2 1.8 3.8E-05 32.4 0.1 43 55-97 60-103 (105)
478 PF09723 Zn-ribbon_8: Zinc rib 68.1 3.3 7.1E-05 26.0 1.3 30 60-95 5-34 (42)
479 PF01155 HypA: Hydrogenase exp 68.0 1.6 3.4E-05 34.0 -0.2 57 28-97 40-96 (113)
480 PRK00423 tfb transcription ini 68.0 2.9 6.4E-05 38.5 1.6 30 60-97 11-40 (310)
481 cd00729 rubredoxin_SM Rubredox 67.9 4.5 9.7E-05 24.2 1.8 25 60-95 2-26 (34)
482 PF13005 zf-IS66: zinc-finger 67.8 3.9 8.4E-05 26.1 1.7 11 62-72 4-14 (47)
483 COG2933 Predicted SAM-dependen 67.7 24 0.00052 31.8 7.0 82 165-262 210-291 (358)
484 TIGR01202 bchC 2-desacetyl-2-h 67.6 40 0.00087 30.6 9.1 86 166-273 144-230 (308)
485 PRK11032 hypothetical protein; 67.5 4 8.6E-05 33.8 2.1 38 53-99 117-154 (160)
486 COG1594 RPB9 DNA-directed RNA 67.5 4.6 9.9E-05 31.4 2.3 35 60-101 2-36 (113)
487 PF04216 FdhE: Protein involve 67.3 2.2 4.8E-05 39.0 0.6 33 60-98 172-208 (290)
488 PRK00415 rps27e 30S ribosomal 67.2 5.2 0.00011 27.1 2.2 32 60-100 11-43 (59)
489 PF13824 zf-Mss51: Zinc-finger 66.9 3.6 7.8E-05 27.5 1.4 24 62-97 1-24 (55)
490 PF00107 ADH_zinc_N: Zinc-bind 66.9 20 0.00043 27.6 6.1 82 176-273 1-88 (130)
491 KOG1227 Putative methyltransfe 66.5 6 0.00013 36.1 3.1 96 166-269 194-290 (351)
492 PF08273 Prim_Zn_Ribbon: Zinc- 66.2 4.4 9.6E-05 25.2 1.6 28 61-95 4-34 (40)
493 TIGR03830 CxxCG_CxxCG_HTH puta 65.8 3.7 8E-05 32.1 1.6 13 86-98 30-42 (127)
494 KOG0821 Predicted ribosomal RN 65.6 17 0.00037 31.8 5.6 70 156-230 40-109 (326)
495 COG0686 Ald Alanine dehydrogen 65.5 47 0.001 30.8 8.6 102 166-275 167-269 (371)
496 PRK14811 formamidopyrimidine-D 65.4 3.6 7.8E-05 37.2 1.6 32 61-99 236-267 (269)
497 PRK05650 short chain dehydroge 65.3 93 0.002 27.3 10.8 74 169-248 2-88 (270)
498 PRK08339 short chain dehydroge 65.3 43 0.00093 29.6 8.6 77 166-247 7-95 (263)
499 PHA02942 putative transposase; 64.9 4.3 9.2E-05 38.7 2.0 27 61-97 326-352 (383)
500 PF11312 DUF3115: Protein of u 64.8 18 0.00039 33.3 5.9 104 168-271 88-239 (315)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=1.4e-24 Score=189.79 Aligned_cols=149 Identities=26% Similarity=0.321 Sum_probs=127.6
Q ss_pred eeeeccccCccCcCCCchhhhhhhcCchhhHHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHH
Q 020988 103 YLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSR 182 (319)
Q Consensus 103 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~ 182 (319)
.+.-++++.++.||.. |+++|++.++.|++.+. ..+...+|.+|||||||||.++.
T Consensus 12 ~v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i---------------~~~~~~~g~~vLDva~GTGd~a~ 67 (238)
T COG2226 12 KVQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRALI---------------SLLGIKPGDKVLDVACGTGDMAL 67 (238)
T ss_pred HHHHHHHhhHHHHHhh---------cccccCcchHHHHHHHH---------------HhhCCCCCCEEEEecCCccHHHH
Confidence 3444555666677743 78899999999997543 34444489999999999999999
Q ss_pred HHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHH
Q 020988 183 KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSS 262 (319)
Q Consensus 183 ~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~r 262 (319)
.+++.....+|+|+|+|++|++.|+++....+ ..++.|+.+|+++|||++++||+|++.++|++++|++.+|+|+.|
T Consensus 68 ~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~R 144 (238)
T COG2226 68 LLAKSVGTGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYR 144 (238)
T ss_pred HHHHhcCCceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHH
Confidence 99999767899999999999999999998753 334999999999999999999999999999999999999999999
Q ss_pred hhcCCCeeEEEEeecc
Q 020988 263 SYSLLSICYLLQFRYT 278 (319)
Q Consensus 263 vlk~g~~~g~~~~~~~ 278 (319)
||||||...++-|...
T Consensus 145 VlKpgG~~~vle~~~p 160 (238)
T COG2226 145 VLKPGGRLLVLEFSKP 160 (238)
T ss_pred hhcCCeEEEEEEcCCC
Confidence 9999999998888443
No 2
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.90 E-value=3.5e-23 Score=187.41 Aligned_cols=174 Identities=20% Similarity=0.374 Sum_probs=127.9
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc-ccCCceeeeccccCcc----CcCCCchhhhhhhcCchhhHH
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY-SSKDNYLDLTVISGLK----DYTEVKPASTELFRSPFVSFL 134 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f-~~~~g~~~~~~~~~~~----~y~~~~~~~~~~~~~~~~s~~ 134 (319)
+|+||+|+++|.... ..++|++ ||.| ..++||+++++.+... .|+ ++++..
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~-~h~fd~a~~Gy~~ll~~~~~~~~~~~d~------~~~~~a------ 57 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQ-NHQFDCAKEGYVNLLPVQHKRSKDPGDN------KEMMQA------ 57 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCC-CCCCccccCceEEeccccccCCCCCCcC------HHHHHH------
Confidence 489999999996543 5699998 9999 8889999999753332 233 344432
Q ss_pred hHHhHHHhhhhCCCCCcHHH--HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC---CeEEEEeCCHHHHHHHHHH
Q 020988 135 YERGWRQNFNRSGFPGPDEE--FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDF 209 (319)
Q Consensus 135 ~~~~w~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~---~~v~gvD~s~~~l~~a~~~ 209 (319)
++.+.+.|++.+... .+.+.+.+. .++.+|||||||+|.++..+++..+. ..++|+|+|+.+++.|+++
T Consensus 58 -----r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~ 131 (272)
T PRK11088 58 -----RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR 131 (272)
T ss_pred -----HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence 344444555543322 233333332 35578999999999999999876542 3789999999999999876
Q ss_pred HhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 210 ~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
. +++.+.++|+.++|+++++||+|++..+. ..++++.|+|||+|.+..+.....
T Consensus 132 ~--------~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 132 Y--------PQVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred C--------CCCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCCc
Confidence 3 47889999999999999999999986541 236789999999998877665433
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.90 E-value=1.9e-23 Score=184.13 Aligned_cols=151 Identities=25% Similarity=0.412 Sum_probs=91.2
Q ss_pred CceeeeccccCccCcCCCchhhhhhhcCchhhHHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChH
Q 020988 101 DNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF 180 (319)
Q Consensus 101 ~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~ 180 (319)
+.++.-+++..++.||.. |..++++.++.|++... +.+...++.+|||+|||||.+
T Consensus 6 ~~~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~~---------------~~~~~~~g~~vLDv~~GtG~~ 61 (233)
T PF01209_consen 6 EQYVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKLI---------------KLLGLRPGDRVLDVACGTGDV 61 (233)
T ss_dssp ----------------------------------------SHHH---------------HHHT--S--EEEEET-TTSHH
T ss_pred HHHHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHHH---------------hccCCCCCCEEEEeCCChHHH
Confidence 344556667777888843 67889999999997433 345667889999999999999
Q ss_pred HHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHH
Q 020988 181 SRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASV 259 (319)
Q Consensus 181 ~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~e 259 (319)
+..+++. ++..+|+|+|+|++|++.|+++.+..+ ..+++++++|++++|+++++||+|++.+++++++|+.++++|
T Consensus 62 ~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E 138 (233)
T PF01209_consen 62 TRELARRVGPNGKVVGVDISPGMLEVARKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALRE 138 (233)
T ss_dssp HHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHH
T ss_pred HHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHH
Confidence 9999886 456799999999999999999988752 449999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCeeEEEEeecc
Q 020988 260 FSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 260 l~rvlk~g~~~g~~~~~~~ 278 (319)
++|+|||||...++.+...
T Consensus 139 ~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 139 MYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp HHHHEEEEEEEEEEEEEB-
T ss_pred HHHHcCCCeEEEEeeccCC
Confidence 9999999999999988544
No 4
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.85 E-value=7.9e-21 Score=163.71 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=129.2
Q ss_pred CceeeeccccCccCcCCCchhhhhhhcCchhhHHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChH
Q 020988 101 DNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF 180 (319)
Q Consensus 101 ~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~ 180 (319)
+..+.-+++.....||.+ |+.++.+.++.|++.+ ...+.+.++.++||++||||..
T Consensus 59 e~~V~~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDi 114 (296)
T KOG1540|consen 59 ERLVHHVFESVAKKYDIM---------NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDI 114 (296)
T ss_pred hhHHHHHHHHHHHHHHHH---------HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchh
Confidence 334444555566667743 6788999999998654 4577788899999999999999
Q ss_pred HHHHHhhCCC------CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHH
Q 020988 181 SRKFAKSGTY------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS 254 (319)
Q Consensus 181 ~~~l~~~g~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~ 254 (319)
+..+.+.... .+|+++|++++|+..++++.++.+......+.|+.+|+++|||++.+||..++.+.|.+++|++
T Consensus 115 aFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~ 194 (296)
T KOG1540|consen 115 AFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ 194 (296)
T ss_pred HHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH
Confidence 9999888654 7899999999999999999876543344559999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeeEEEEee
Q 020988 255 NAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 255 ~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+.++|++|||||||.+.++.|+
T Consensus 195 k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 195 KALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred HHHHHHHHhcCCCcEEEEEEcc
Confidence 9999999999999999999994
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.83 E-value=6e-20 Score=165.10 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=99.8
Q ss_pred HHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (319)
+.+...++.+|||||||+|.++..+++. ++..+|+|+|+|++|++.|+++..........+++++++|++++|+++++|
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence 3455567889999999999999988876 455699999999999999988753211112358999999999999999999
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
|+|++.++++|++|+..+++|+.|+|||||.+.++.+.
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99999999999999999999999999999998888774
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.77 E-value=3e-18 Score=129.20 Aligned_cols=94 Identities=27% Similarity=0.406 Sum_probs=82.4
Q ss_pred EEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCC
Q 020988 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250 (319)
Q Consensus 171 LDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~ 250 (319)
||+|||+|.++..+++. +..+++|+|+++.+++.++++... .++.+..+|++++|+++++||+|++.++++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999998 445999999999999999998754 46779999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCeeE
Q 020988 251 PSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 251 ~d~~~~l~el~rvlk~g~~~g 271 (319)
+++..+++++.|+|||+|...
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEe
Confidence 999999999999999988653
No 7
>PRK05785 hypothetical protein; Provisional
Probab=99.77 E-value=2.4e-18 Score=151.43 Aligned_cols=96 Identities=27% Similarity=0.270 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
++.+|||||||||.++..+++.. ..+|+|+|+|++|++.|+++. .++++|++.+|+++++||+|++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-----------DKVVGSFEALPFRDKSFDVVMSSF 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-----------ceEEechhhCCCCCCCEEEEEecC
Confidence 47899999999999999999884 349999999999999998641 357899999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++|++|++.+++|++|++|| ..+++.+
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp--~~~ile~ 146 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRK--QVGFIAM 146 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcC--ceEEEEe
Confidence 999999999999999999998 3445544
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.75 E-value=2.8e-17 Score=153.24 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=96.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....+ ...++.++++|+.++|+++++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcccCCCCCCCccEEEEC
Confidence 567899999999999999999874 3599999999999999999876642 2357999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+++|++|+..+++++.|+|||||.+.+..+
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999999999998776654
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=4.1e-17 Score=144.06 Aligned_cols=116 Identities=26% Similarity=0.303 Sum_probs=99.4
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
.+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+++++... ...++.++.+|+.++++++
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCCC
Confidence 3444566677899999999999999999876 45569999999999999999988654 2457999999999988888
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++..+++|++++..+++++.++|+|+|...++..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999999999999999999999999999999987765444
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.73 E-value=8.7e-18 Score=144.94 Aligned_cols=105 Identities=25% Similarity=0.314 Sum_probs=92.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||-|.++..+++.|. +|+|+|+++.+++.|+.+..+. .-.+++.+..++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~----gv~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALES----GVNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhc----cccccchhhhHHHHHhcCCCccEEEEh
Confidence 4789999999999999999999997 9999999999999999988764 344668888888887666899999999
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.||||++||+.+++.+.+++||+|....-.+
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 9999999999999999999999976655444
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.71 E-value=1.2e-16 Score=132.12 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=93.9
Q ss_pred cCCCeEEEEcCCcChHHHHHH-hhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~-~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V 241 (319)
..+.+|||+|||+|.++..++ +.++..+++|+|+|+.+++.|+++++..+ ..+++++++|+.+++ ++ +.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEE
Confidence 357899999999999999999 45667799999999999999999887753 458999999999987 55 799999
Q ss_pred EecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 242 HAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++..+++|+.++...++++.++++++|...+..+.
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999998877666554
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.71 E-value=7.3e-17 Score=148.43 Aligned_cols=107 Identities=20% Similarity=0.249 Sum_probs=93.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++....+ ...++.++++|++++++.+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3567999999999999999988765 99999999999999998764421 1247899999999998878899999999
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++|||++|+..+++++.++|||+|...+..+
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 9999999999999999999999987766654
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=1.3e-16 Score=143.09 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=92.9
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++ +++++++|+.+++ .++
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~-~~~ 88 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWK-PKP 88 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCC-CCC
Confidence 44555666678999999999999999999987667999999999999999763 5789999998875 467
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+||+|++..++||++++..+++++.++|||||.+.+.+
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999999999999999999999999998776554
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.70 E-value=1.4e-16 Score=142.97 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=94.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEe
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA 243 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~ 243 (319)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++....+ ...+++++++|+.+++ +.+++||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 4568999999999999999999876 99999999999999999887642 2357899999998764 55789999999
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
..+++|+.++..+++++.++|||+|.+.++.+.
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 999999999999999999999999998776654
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.68 E-value=6e-16 Score=138.43 Aligned_cols=111 Identities=21% Similarity=0.233 Sum_probs=95.4
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+...++.+|||+|||+|.++..+.+.+. +++|+|+|+.|++.++++.. ...++++|++.+|+++
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCcCCC
Confidence 4555556555678999999999999999988765 99999999999999998742 3468899999999988
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++||+|+++.+++|.+|+..+++++.++|+|+|.+.+..+.
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999999999999999999999999887766553
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.68 E-value=8.9e-16 Score=138.22 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
+..+.+...+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++... ..++.+..+|+...|
T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~ 112 (263)
T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKD 112 (263)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCC
Confidence 345666667777889999999999999998887653 35999999999999999988643 257999999999989
Q ss_pred CCCCCccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 FASGFVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++++||+|++..+++|++ ++..+++++.++|||+|.+.+..+
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9889999999999999987 788999999999999998776554
No 17
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=1.5e-15 Score=140.47 Aligned_cols=113 Identities=20% Similarity=0.186 Sum_probs=92.8
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+...+...++.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++......+ ...++.++.+|++++|+ +
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp~-~ 187 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLPA-L 187 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCCC-c
Confidence 4556666666789999999999999999999875 369999999999876543322110 13479999999999998 7
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
++||+|++.++++|..|+..++++++++|+|||.+.+
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEE
Confidence 8999999999999999999999999999999887643
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=2.1e-15 Score=130.06 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=92.2
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ ..++++..+|+.++++. +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-C
Confidence 444555556778999999999999999999876 99999999999999999877652 34688999999888774 6
Q ss_pred CccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEE
Q 020988 237 FVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+||+|++..+++|++ +...+++++.++|+|+|..-++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 799999999999886 3568899999999999875443
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.65 E-value=1.8e-15 Score=118.07 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC-CCCCCCCCCccEEEec
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~ 244 (319)
|+.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|+++....+ ...+++++++|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECccccCccc-CCCCCEEEEC
Confidence 5789999999999999999996556799999999999999999984422 468999999999 33443 3579999999
Q ss_pred c-cccCCCC---HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 A-ALHCWPS---PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~-vl~h~~d---~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
. +++++.+ ..++++.+.+.|+|+ |.+++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pg---G~lvi 109 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPG---GRLVI 109 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEE---EEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCC---cEEEE
Confidence 9 5565543 456677777776664 45544
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.64 E-value=2.7e-15 Score=134.74 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=93.8
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|+++. .++.++.+|+..+. .+
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC-CC
Confidence 3444555566789999999999999999998876779999999999999999864 46889999998765 34
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
++||+|+++.+++|++|+..+++++.++|||||.+.+.+
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 699999999999999999999999999999998765543
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.64 E-value=4.8e-15 Score=135.90 Aligned_cols=115 Identities=18% Similarity=0.133 Sum_probs=91.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+...+...++.+|||||||+|.++..++..++ ..|+|+|+|+.|+..++...+.. ....++.+..++++++|..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQLHEL- 186 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHCCCC-
Confidence 4455556667789999999999999998888875 47999999999987653321110 0135788888999988864
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
.+||+|++.++++|++++..++++++++|||||.+.+-.
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 589999999999999999999999999999998876543
No 22
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.63 E-value=2.6e-15 Score=125.87 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=95.2
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeE-EEEcCCCCCC-C
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-F 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-~ 233 (319)
..+..++.......|||||||||..-.. ...-+..+|+++|+++.|-+.+.+.+.++ ...++. |+.++.+++| +
T Consensus 66 s~i~~~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l 141 (252)
T KOG4300|consen 66 SGIYYFLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQL 141 (252)
T ss_pred hhhHHHhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCccc
Confidence 3444455555667889999999998443 34346779999999999999999988776 456776 9999999998 8
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+++++|+|++..+|+.+.|+.+.++++.|+|||+|....+
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8999999999999999999999999999999999876554
No 23
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.63 E-value=5.6e-16 Score=134.71 Aligned_cols=103 Identities=26% Similarity=0.406 Sum_probs=87.2
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCC----CeEEEEcCCCCCCCCCCCccEEE
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~----~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
+.+|||+|||+|.++..|++.|. +|+|+|+++.|++.|+++ +..++.... ++.+.+.|++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 47899999999999999999987 999999999999999998 444333333 3566677777653 5699999
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
|..++||+.||...+.-+.+++||+|+..+-.+
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 999999999999999999999999987776554
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.63 E-value=7.9e-16 Score=118.27 Aligned_cols=95 Identities=25% Similarity=0.384 Sum_probs=76.1
Q ss_pred EEEEcCCcChHHHHHHhhC---CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec-c
Q 020988 170 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A 245 (319)
Q Consensus 170 VLDiGcG~G~~~~~l~~~g---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-~ 245 (319)
|||+|||+|..+..+.+.. +..+++|+|+|++|++.++++.... ..+++++++|+.++++.+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999884 3469999999999999999998764 348999999999999888999999995 5
Q ss_pred cccCCCCH--HHHHHHHHHhhcCCC
Q 020988 246 ALHCWPSP--SNAASVFSSSYSLLS 268 (319)
Q Consensus 246 vl~h~~d~--~~~l~el~rvlk~g~ 268 (319)
+++|+.+. ..+++++.+++||+|
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 69998543 466777777777764
No 25
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.62 E-value=4.1e-15 Score=137.46 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=91.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++..+..+++++|+|++|++.|+++... .++.++.+|++++++++++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCCCCceeEEEEc
Confidence 457899999999999998888775556899999999999999987532 47889999999999988999999999
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
.+++|++++...++++.++|+|+|...++
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999999999999999987654
No 26
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=5.6e-15 Score=131.81 Aligned_cols=118 Identities=16% Similarity=0.082 Sum_probs=102.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...+|++|||||||.|.++..+++.. +.+|+|+++|+++.+.+++++...+ ...+++++..|..+++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEeccccccc--
Confidence 4566777788999999999999999999999985 5799999999999999999998875 3358899998988775
Q ss_pred CCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 235 SGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
+.||.|++.+++||+.. ....++.+.++|+|+|...+..+...
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 45999999999999976 77899999999999998888877433
No 27
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.62 E-value=4.7e-17 Score=124.56 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=64.9
Q ss_pred EEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEEeccccc
Q 020988 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALH 248 (319)
Q Consensus 171 LDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~ 248 (319)
||||||+|.++..+.+..+..+++|+|+|+.|++.+++++.... ..+...+..+..+.. ...++||+|++.+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999777799999999999999988887742 223334443333321 1125999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCee
Q 020988 249 CWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 249 h~~d~~~~l~el~rvlk~g~~~ 270 (319)
|++++...++.+.++|+|+|.+
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999853
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=1e-14 Score=142.17 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=98.4
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++... ...++.++.+|+..++++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccCCCC
Confidence 4455555555678899999999999998888764 45999999999999999987653 235789999999998888
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||+|++.++++|++++..+++++.++|||||...+..+
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 88999999999999999999999999999999887665544
No 29
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.62 E-value=7.4e-15 Score=126.49 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=90.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+.+.+...++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ .++.+...|+...++.
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN- 92 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-
Confidence 3444556666678999999999999999999876 99999999999999998876542 2467778888766654
Q ss_pred CCccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEE
Q 020988 236 GFVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
++||+|++..+++|++ +....++++.++|+|+|...++.
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 5899999999999985 34678999999999999855543
No 30
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.61 E-value=1e-14 Score=128.79 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=93.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
..+.+|||||||+|.++..+++.++..+++|+|+++.+++.++++.. .++.++.+|+.+.++.+++||+|++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEh
Confidence 34579999999999999999999887789999999999999988753 37889999999999888999999999
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++++|+.++...++++.++++++|...+..+
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999999999999999999987776655
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.61 E-value=1.3e-14 Score=131.26 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=94.5
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (319)
...++.+|||||||+|..+..+++. ++..+|+|+|+++.+++.|+++....+ ..+++++.+|++.+++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEE
Confidence 3467899999999999988766665 555589999999999999999876652 358899999999999888899999
Q ss_pred EecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 242 HAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
++..+++|.++....++++.++|||||.+.+..
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999999999999998876653
No 32
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=4.1e-14 Score=120.67 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
++.+|||||||+|..+..+++..+..+|+|+|+++.+++.|+++.+..+ ..+++++.+|+.+++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 4789999999999999999887677799999999999999999988763 3469999999998876 67999999974
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+.++...++++.++++|+|.+.++...
T Consensus 121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 121 ----VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 457788999999999999988877653
No 33
>PRK08317 hypothetical protein; Provisional
Probab=99.60 E-value=2.5e-14 Score=126.26 Aligned_cols=115 Identities=28% Similarity=0.365 Sum_probs=98.6
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++... ...++.+..+|+..+++.
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEecccccCCCC
Confidence 344556666788999999999999999998875 567999999999999999987332 246789999999988888
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+++||+|++..+++|++++..+++++.++|+|+|...+..
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 8999999999999999999999999999999998766544
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=1.8e-14 Score=128.64 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=88.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHhh--CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~--g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
.++.+|||||||+|..+..+++. .+..+++|+|+|+.|++.|++++...+ ...+++++++|+.++|++ .+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAIE--NASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhCCCC--CCCEEe
Confidence 46789999999999999888773 456799999999999999999987642 234799999999988864 599999
Q ss_pred ecccccCCCCH--HHHHHHHHHhhcCCCeeEEE
Q 020988 243 AGAALHCWPSP--SNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 243 ~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~ 273 (319)
++.+++|+++. ..+++++.++|||||.+.+.
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999999753 47899999999999876654
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.59 E-value=1.4e-14 Score=130.65 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=89.9
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...+|.+|||||||.|.++..+++.. +++|+|+.+|+++.+.+++++...+ ...++++...|..+++.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccccCC-
Confidence 3455666677899999999999999999999993 4599999999999999999998764 45679999999987753
Q ss_pred CCCccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+||.|++.+++||+. +....++++.++|||+|...+-.+
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999994 557899999999999998876655
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.59 E-value=6.1e-15 Score=122.21 Aligned_cols=105 Identities=23% Similarity=0.369 Sum_probs=84.2
Q ss_pred HHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 157 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
.+..+.. ..++++|||||||+|.++..+++.+. +++|+|+++.+++. . ++.....+....+.++
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~ 76 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPD 76 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHS
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccc
Confidence 4444443 46789999999999999999988877 99999999999887 1 2334444444555567
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++||+|+++.+|+|++|+..+++++.+++||+|...+....
T Consensus 77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 89999999999999999999999999999988766655553
No 37
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.57 E-value=4.5e-14 Score=122.32 Aligned_cols=91 Identities=11% Similarity=0.241 Sum_probs=75.5
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|+++. .++.+.++|+.+ |+++++||+|++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEEC
Confidence 4567999999999999999988755569999999999999998864 356788999888 8888999999999
Q ss_pred ccccCCCC--HHHHHHHHHHhh
Q 020988 245 AALHCWPS--PSNAASVFSSSY 264 (319)
Q Consensus 245 ~vl~h~~d--~~~~l~el~rvl 264 (319)
++++|++. ...+++++.|++
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS 134 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc
Confidence 99999952 235566666665
No 38
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.57 E-value=2.9e-14 Score=125.26 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=91.2
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (319)
.+|||||||+|.++..+++..+..+++|+|+|+++++.+++++...+ ...++.++.+|+...+++ ++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence 37999999999999999988766799999999999999999887643 345789999999777664 589999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 248 HCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 248 ~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+|++++...++++.++|||+|...+..+
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999999999999999999988766544
No 39
>PRK06202 hypothetical protein; Provisional
Probab=99.56 E-value=4.3e-14 Score=125.01 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=80.9
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHh----hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~----~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (319)
+...++.+|||||||+|.++..+++ .++..+|+|+|+|++|++.|+++... .++.+...+...++..+++
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCC
Confidence 3345678999999999999888765 35556999999999999999987543 3577777777777777789
Q ss_pred ccEEEecccccCCCCHH--HHHHHHHHhhc
Q 020988 238 VDAVHAGAALHCWPSPS--NAASVFSSSYS 265 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~~--~~l~el~rvlk 265 (319)
||+|++++++||+++++ .+++++.|+++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 99999999999998863 68899999887
No 40
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.55 E-value=3.9e-14 Score=126.60 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=87.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHH--HHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY--DFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~--~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
+.+...+....|.+|||||||+|+++..++..|+ ..|+|+|++....-..+ +++.. ....+.++..-++++|.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg----~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLG----QDPPVFELPLGVEDLPN 179 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhC----CCccEEEcCcchhhccc
Confidence 6777788778899999999999999999999986 57999999987655532 23221 11233444356788887
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
.+.||+|++.+||.|..+|...+++++..|++||..-
T Consensus 180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELV 216 (315)
T ss_pred -cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEE
Confidence 6899999999999999999999999999999987544
No 41
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.55 E-value=9.9e-14 Score=123.24 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=87.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
.++.+|||||||+|.++..+++.. +..+++|+|+|+.|++.|+++++..+ ...+++++++|+..++++ .+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCCC--CCCEEe
Confidence 467899999999999999998863 56799999999999999999886532 234789999999998865 589999
Q ss_pred ecccccCCCC--HHHHHHHHHHhhcCCCeeEEE
Q 020988 243 AGAALHCWPS--PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 243 ~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~ 273 (319)
+..+++|+++ +..+++++.++|+|+|.+.+.
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 9999999964 467899999999998865444
No 42
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=7.3e-14 Score=127.44 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=87.1
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+ .++++...|+...++ +++||+|++
T Consensus 118 ~~~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 118 TVKPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred ccCCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEE
Confidence 34567999999999999999999876 99999999999999999887642 378888889887665 678999999
Q ss_pred cccccCCC--CHHHHHHHHHHhhcCCCeeEEE
Q 020988 244 GAALHCWP--SPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 244 ~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~ 273 (319)
..+++|++ +....++++.++++|+|...++
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999986 3457899999999999875544
No 43
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.54 E-value=1.1e-13 Score=121.03 Aligned_cols=111 Identities=25% Similarity=0.328 Sum_probs=95.8
Q ss_pred HHhhccCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (319)
..+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++... ..++.++.+|+.++++.+++|
T Consensus 33 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~ 107 (223)
T TIGR01934 33 KLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-----PLNIEFIQADAEALPFEDNSF 107 (223)
T ss_pred HHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-----CCCceEEecchhcCCCCCCcE
Confidence 3444457889999999999999999988764 6899999999999999987641 357899999999988877899
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
|+|++..+++|.+++..+++++.++|+|+|...+..+
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999999999999999987776554
No 44
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.54 E-value=2e-13 Score=118.96 Aligned_cols=110 Identities=23% Similarity=0.223 Sum_probs=85.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc---------CccCCCCeEEEEcCCCCCCCC-
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------NTILTSNLALVRADVCRLPFA- 234 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~~~i~~~~~d~~~lp~~- 234 (319)
.++++|||+|||.|..+..++++|. +|+|+|+|+.+++.+.+..... ......+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4678999999999999999999998 9999999999999864432110 000134789999999988642
Q ss_pred CCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEee
Q 020988 235 SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
.++||.|+...+++|++.. ...++.+.++|||+|...++.+.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 4679999999999999643 35688899999999876666553
No 45
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.54 E-value=2.9e-14 Score=119.81 Aligned_cols=98 Identities=14% Similarity=0.275 Sum_probs=84.4
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C-CC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PF 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~ 233 (319)
+.+.+++ .++.+|||+|||.|.++..+.+. .+.+..|+|++++.+..+.++ ++.++++|+++ + .|
T Consensus 5 ~~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWI--EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADF 71 (193)
T ss_pred HHHHHHc--CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhC
Confidence 4555555 45899999999999999999886 467999999999998888765 78899999976 4 48
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcC
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSL 266 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~ 266 (319)
++++||.|+++.+|+++.+|+..++|+.|+.|.
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRR 104 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHhcCe
Confidence 899999999999999999999999999998553
No 46
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.53 E-value=1.1e-13 Score=116.50 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=86.2
Q ss_pred HHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (319)
Q Consensus 159 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (319)
...++...-.++||+|||.|.++..|+.+.- +++++|+|+.+++.|+++... .+++.++++|+.+.. ++++|
T Consensus 36 ~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~-P~~~F 107 (201)
T PF05401_consen 36 LAALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFW-PEGRF 107 (201)
T ss_dssp HHHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-E
T ss_pred HHhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCC-CCCCe
Confidence 3356666678999999999999999999865 999999999999999999875 479999999997753 57899
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY 277 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~ 277 (319)
|+|+++.+++++.+.+..-+.+.++.+.+.++|.+++..
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999999999776665556677777888888888843
No 47
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.53 E-value=2.7e-13 Score=115.31 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=84.3
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..++..++..+|+|+|+|+.+++.++++.++.+ ..+++++.+|+.+++. +++||+|++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~~-~~~fD~I~s~ 116 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQH-EEQFDVITSR 116 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhccc-cCCccEEEeh
Confidence 35789999999999999998887777789999999999999998887653 3579999999988753 5799999987
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
. + .+....++.+.++|+|+|...+..
T Consensus 117 ~-~---~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 117 A-L---ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred h-h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 5 3 455677888999999998766553
No 48
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.52 E-value=3.4e-13 Score=119.13 Aligned_cols=116 Identities=27% Similarity=0.379 Sum_probs=97.3
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
+...+...++.+|||+|||+|.++..+++.++ ..+++++|+++.+++.+++++...+ ...++.++.+|+..+++..+
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCCCC
Confidence 33444445678999999999999999998875 5799999999999999999875431 23578999999998887778
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+||+|++..+++|+.++...++++.++++++|...++.+
T Consensus 121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 999999999999999999999999999999987655544
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.51 E-value=5.1e-13 Score=105.78 Aligned_cols=112 Identities=18% Similarity=0.113 Sum_probs=88.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA 234 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~ 234 (319)
..+.+.+...++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.++++++..+ ..++.++.+|+.. ++..
T Consensus 9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhh
Confidence 34455555566789999999999999999998766799999999999999999887642 3578888888765 3333
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
.++||+|++....++ ...+++++.++|+++|.+.+-
T Consensus 86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEE
Confidence 468999999876554 357899999999998875543
No 50
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.51 E-value=6.2e-14 Score=118.52 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=99.1
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+...++..+..+|.|+|||+|..+..+.++.|...++|+|-|++|++.|++++ ++++|..+|+.+.. ++
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl--------p~~~f~~aDl~~w~-p~ 90 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL--------PDATFEEADLRTWK-PE 90 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC--------CCCceecccHhhcC-CC
Confidence 4455666777889999999999999999999999999999999999999998874 68899999999875 35
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++|+++++.+|++++|-...+..+...|.|||.+.+-+.
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 7899999999999999999999999999999998887776
No 51
>PRK06922 hypothetical protein; Provisional
Probab=99.50 E-value=2e-13 Score=133.82 Aligned_cols=108 Identities=16% Similarity=0.196 Sum_probs=91.0
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccE
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDA 240 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~ 240 (319)
...++++|||||||+|.++..+++..+..+++|+|+|+.|++.|+++.... ..++.++++|+.++| +++++||+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEE
Confidence 334689999999999999999988878889999999999999999876542 346788999998887 77899999
Q ss_pred EEecccccCCC-------------CHHHHHHHHHHhhcCCCeeEEEE
Q 020988 241 VHAGAALHCWP-------------SPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 241 V~~~~vl~h~~-------------d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
|+++.++||+. ++..+++++.++|||||...+..
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999998762 45688999999999998776653
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.49 E-value=4.6e-13 Score=117.38 Aligned_cols=105 Identities=25% Similarity=0.358 Sum_probs=83.9
Q ss_pred HHHHHHhh--ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 156 ~~l~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
+.+.+++. ..++.+|||||||+|.++..+++.+. +++|+|+|+++++.|++++...+ ...++.+.++|+..++
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC-
Confidence 34444554 45688999999999999999998765 99999999999999999886542 1247899999998876
Q ss_pred CCCCccEEEecccccCCCC--HHHHHHHHHHhhcCC
Q 020988 234 ASGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLL 267 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g 267 (319)
++||+|++..+++|++. ...+++++.++++++
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 68999999999999864 346677777776643
No 53
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.48 E-value=3.3e-13 Score=116.84 Aligned_cols=107 Identities=14% Similarity=0.164 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC-CCCC--CCCCCccEEE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH 242 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp--~~~~~fD~V~ 242 (319)
++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|+++....+ ..++.++++|+ ..++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence 6789999999999999999988777789999999999999999887642 36799999999 7666 6678999999
Q ss_pred ecccccCCC--------CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGAALHCWP--------SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~vl~h~~--------d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+.+...+.. ....+++++.++|||+|.+.+...
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 876543221 135779999999999987765543
No 54
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.48 E-value=2.1e-13 Score=117.32 Aligned_cols=98 Identities=13% Similarity=0.221 Sum_probs=79.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C-CC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PF 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~ 233 (319)
+.+.+.+. ++.+|||||||+|.++..+++.. ...++|+|+|+++++.++++ ++.++++|+.+ + ++
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~ 71 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAF 71 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhccccc
Confidence 44445543 56899999999999998887653 34789999999999988652 56788889875 4 46
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcC
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSL 266 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~ 266 (319)
.+++||+|++.++++|++|+..+++++.|++++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 678999999999999999999999999887653
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.48 E-value=5e-13 Score=113.65 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=84.3
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (319)
+.+.+...+++++||+|||.|+.+..+++.|. .|+++|.|+..++.+++..++. .-.++..+.|+.+..++ +.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~----~l~i~~~~~Dl~~~~~~-~~ 94 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE----GLDIRTRVADLNDFDFP-EE 94 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT----T-TEEEEE-BGCCBS-T-TT
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc----CceeEEEEecchhcccc-CC
Confidence 44455556789999999999999999999999 9999999999999998877664 34588999999888875 68
Q ss_pred ccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 238 VDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
||+|++..|++|++.+ ...++.|...++|||..-+..+
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 9999999999998643 3466777777777776555444
No 56
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=1.1e-12 Score=113.84 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=87.1
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
...+.+.+...++.+|||||||+|..+..+++.. ...+|+++|+++++++.|++++...+ ...+++++.+|+.+...
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCc
Confidence 3455566666788999999999999998888763 24589999999999999999887642 22368999999987544
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
...+||+|++..+++|++ +++.++|++||.+.+
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi 171 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVI 171 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEE
Confidence 567999999999988875 367788888886643
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.47 E-value=6.9e-13 Score=125.41 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=91.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+++++.|+++... .++++...|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l--- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence 3445555666788999999999999999898763 35999999999999999998742 2578888888765
Q ss_pred CCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||.|++..+++|+.+ +...++++.++|||+|...+..+
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 468999999999999964 46889999999999987776655
No 58
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.47 E-value=5.5e-13 Score=120.09 Aligned_cols=106 Identities=12% Similarity=0.160 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCcCh----HHHHHHhhCC-----CCeEEEEeCCHHHHHHHHHHHhh----cCc-----------------
Q 020988 166 QGGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNT----------------- 215 (319)
Q Consensus 166 ~~~~VLDiGcG~G~----~~~~l~~~g~-----~~~v~gvD~s~~~l~~a~~~~~~----~~~----------------- 215 (319)
++.+|+|+|||+|. ++..+.+.++ ..+|+|+|+|+.|++.|++..-. .+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4445555432 45899999999999999985310 000
Q ss_pred ---cCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeE
Q 020988 216 ---ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICY 271 (319)
Q Consensus 216 ---~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g 271 (319)
....++.|.++|+.+.+++.++||+|+|.++++|++++. +++++++++|+|||.+.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~ 239 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLF 239 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 011378999999999887788999999999999996544 68999999998887543
No 59
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.45 E-value=6.9e-13 Score=129.38 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=89.5
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC--CCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~ 233 (319)
..+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++... ...++.++++|+. .+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESING-----HYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhc-----cCCceEEEEecccccccCC
Confidence 4455566656778999999999999999998865 99999999999998766432 2357899999986 4677
Q ss_pred CCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeE
Q 020988 234 ASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICY 271 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g 271 (319)
++++||+|++..+++|+++. ..+++++.++|||+|...
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~ 139 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIF 139 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 78899999999999999874 578899999998887653
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=2.7e-12 Score=108.92 Aligned_cols=112 Identities=12% Similarity=0.155 Sum_probs=89.4
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+...+...++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++++... ..++.++.+|+.+.+ .
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~--~ 80 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN----NVGLDVVMTDLFKGV--R 80 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEccccccc--C
Confidence 3444555556678999999999999999999886 9999999999999999988764 246888899987654 3
Q ss_pred CCccEEEecccccCCCCH---------------------HHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSP---------------------SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~---------------------~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|+++..+++.++. ...++++.++|+++|...+...
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 589999999888776542 3568888899999887666554
No 61
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.44 E-value=2.5e-12 Score=112.40 Aligned_cols=110 Identities=20% Similarity=0.191 Sum_probs=85.2
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc---------CccCCCCeEEEEcCCCCCCCC
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------NTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------~~~~~~~i~~~~~d~~~lp~~ 234 (319)
..++++|||+|||.|..+..+++.|. +|+|+|+|+.+++.+.+..... ......++++.++|+.+++..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 34678999999999999999999988 9999999999999875321100 000135789999999988543
Q ss_pred -CCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 -SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 -~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+.||.|+-..+++|++.. .+.++.+.++|+|+|.+.++.+
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 2689999999999999643 4678899999999987555444
No 62
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=3.2e-12 Score=111.52 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=88.3
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
...+.+.+...++.+|||||||+|.++..+++.. ...+|+++|+++++++.++++++..+ ..++.++.+|......
T Consensus 65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCC
Confidence 4556667777889999999999999998888763 44699999999999999999987653 4579999999987655
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
..++||+|++..+.++++ +.+.+.||++|.+.+.
T Consensus 142 ~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 668999999988877653 3566788888875443
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.44 E-value=2.9e-12 Score=107.94 Aligned_cols=119 Identities=18% Similarity=0.289 Sum_probs=92.3
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+...++++|||+|||+|..+..+++.++..+|+++|+++.+++.++++++.++ ..+++++..|..+. .
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~---~~~v~~~~~d~~~~-~ 94 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG---LENVEVVQSDLFEA-L 94 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT---CTTEEEEESSTTTT-C
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC---cccccccccccccc-c
Confidence 3456677776668899999999999999999999987679999999999999999998863 33489999998663 3
Q ss_pred CCCCccEEEecccccCCCC-----HHHHHHHHHHhhcCCCeeEEEEee
Q 020988 234 ASGFVDAVHAGAALHCWPS-----PSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d-----~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
.+++||+|+++--++.-.+ ..+.+++..+.|+++|.+.++.-.
T Consensus 95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 3689999999877655443 356677788888888877765543
No 64
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.43 E-value=1.2e-12 Score=112.71 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=86.2
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCccEEE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH 242 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~ 242 (319)
...+|||||||+|.++..+++..+..+++|+|+++.+++.|++++...+ ..+++++++|+.+++ ++++++|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~---l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG---LKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC---CCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 4579999999999999999999888899999999999999999887652 458999999997653 4556899999
Q ss_pred ecccccCCCCH--------HHHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGAALHCWPSP--------SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~vl~h~~d~--------~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+.....+.... ...++++.++|||+|.+.+..-
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 87543332211 4679999999999998765544
No 65
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=3.6e-12 Score=108.94 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=88.5
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
...+...+...++.+|||||||+|.++..+++.++..+|+++|+++.+++.+++++...+ ..+++++.+|+. .++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---~~~i~~~~~d~~-~~~- 94 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---CGNIDIIPGEAP-IEL- 94 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCeEEEecCch-hhc-
Confidence 344556666668899999999999999999988777899999999999999999887642 347889998874 233
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
.++||+|++....++ ....++++.++|+++|.+.+..
T Consensus 95 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 95 PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEE
Confidence 368999999876554 4567888999999988765443
No 66
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.41 E-value=4.8e-12 Score=111.48 Aligned_cols=102 Identities=23% Similarity=0.319 Sum_probs=78.1
Q ss_pred HHHHHHhhc---cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 156 KMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 156 ~~l~~~l~~---~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
+.+...+.. .++.+|||||||+|.++..+++.+. .|+|+|+|+.+++.|+++....+ ...++.+..+|+.
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~--- 122 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLE--- 122 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCch---
Confidence 344444433 5678999999999999999998876 79999999999999999886542 1247889998853
Q ss_pred CCCCCccEEEecccccCCCCHH--HHHHHHHHhh
Q 020988 233 FASGFVDAVHAGAALHCWPSPS--NAASVFSSSY 264 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvl 264 (319)
..+++||+|++..+++|++++. ..++++.+++
T Consensus 123 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~ 156 (230)
T PRK07580 123 SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLT 156 (230)
T ss_pred hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhc
Confidence 3357899999999999987553 4455555543
No 67
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.41 E-value=3.5e-12 Score=110.98 Aligned_cols=106 Identities=16% Similarity=0.078 Sum_probs=82.6
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------CC
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 234 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~ 234 (319)
..++.+|||||||+|.++..+++.. +...|+|+|+++ +. ..+++.++++|+.+.+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------------~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------------PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------------CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 3568899999999999999998874 446899999988 11 1357899999998853 56
Q ss_pred CCCccEEEecccccCCCCH-----------HHHHHHHHHhhcCCCeeEEEEeeccchhcc
Q 020988 235 SGFVDAVHAGAALHCWPSP-----------SNAASVFSSSYSLLSICYLLQFRYTKIIEL 283 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~el~rvlk~g~~~g~~~~~~~~~~~~ 283 (319)
+++||+|++..+.++..++ ..+++++.++|+|||.+.+.++....+.+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~ 174 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEY 174 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHH
Confidence 7899999998777665443 357899999999999888877755544433
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.41 E-value=6.1e-12 Score=109.99 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=87.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
...+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++++++.|++++...+ ..+++++.+|+.+...
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCCc
Confidence 34566667778899999999999999999988754 3469999999999999999988753 4679999999977544
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
..++||+|++.....+++ +.+.+.|+++|.+.+
T Consensus 143 ~~~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKIP------EALIDQLKEGGILVM 175 (215)
T ss_pred ccCCCCEEEEcCCccccc------HHHHHhcCcCcEEEE
Confidence 457899999988776663 447778888876544
No 69
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.41 E-value=3e-12 Score=119.69 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=90.7
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFA 234 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~ 234 (319)
.+.+.+....+..+||||||+|.++..+++..|...++|+|+++.+++.+.+++...+ ..|+.++++|+..+ .++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCC
Confidence 4444555566779999999999999999999888899999999999999999887753 56899999999764 467
Q ss_pred CCCccEEEecccccCCCCH------HHHHHHHHHhhcCCCeeEEE
Q 020988 235 SGFVDAVHAGAALHCWPSP------SNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~------~~~l~el~rvlk~g~~~g~~ 273 (319)
++++|.|++.+...|...+ ...++++.|+|++||...+.
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 8999999985433222111 57899999999998876554
No 70
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.40 E-value=5.1e-12 Score=116.11 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=74.4
Q ss_pred HHHHHHHhhc---cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCC
Q 020988 155 FKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVC 229 (319)
Q Consensus 155 ~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~ 229 (319)
.+.+.+++.. .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.+.... ....++.+..+|+.
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3445555543 3578999999999999999999875 999999999999999998765310 01246788888886
Q ss_pred CCCCCCCCccEEEecccccCCCCHH
Q 020988 230 RLPFASGFVDAVHAGAALHCWPSPS 254 (319)
Q Consensus 230 ~lp~~~~~fD~V~~~~vl~h~~d~~ 254 (319)
.+ +++||+|++.++++|+++..
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~ 229 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDK 229 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHH
Confidence 54 47899999999999997643
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=99.40 E-value=1e-11 Score=112.17 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=83.7
Q ss_pred cCCCeEEEEcCCcChHHHH--HHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRK--FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~--l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
.++.+|+|||||.|.++.. ++...+..+++|+|+++++++.|++.+... .....+++|.++|+.+.+...+.||+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccccCCcCEEE
Confidence 3789999999998854433 334567788999999999999999988541 1235689999999988653357899999
Q ss_pred ecccccCC--CCHHHHHHHHHHhhcCCCeeE
Q 020988 243 AGAALHCW--PSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 243 ~~~vl~h~--~d~~~~l~el~rvlk~g~~~g 271 (319)
+. +++++ +++.++++.+.+.++|||..-
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEE
Confidence 99 99988 688899999999988887543
No 72
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.40 E-value=6.6e-12 Score=115.63 Aligned_cols=115 Identities=13% Similarity=0.062 Sum_probs=94.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+...++.+|||||||+|.++..+++..|..+++++|. +.+++.+++++...+ ...+++++.+|+.+.+++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~~- 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYP- 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCCC-
Confidence 3444555556778999999999999999999998889999998 789999999887653 345799999999876664
Q ss_pred CCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+|+|++.+++|++.+. ...++++.++|+|||...+..+
T Consensus 215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 36999999999998664 3689999999999987776654
No 73
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.39 E-value=6.6e-12 Score=110.97 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=92.8
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-C
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~ 233 (319)
.+.+...+...++.+|||||||+|.++..+.+.+. +++++|+++.+++.+++++... ..++.+...|+...+ .
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhh
Confidence 34555555556788999999999999999988765 8999999999999999887653 235778888887764 3
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
.+++||+|++.++++|++++..+++.+.++++++|...+.
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 4579999999999999999999999999999998875543
No 74
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.38 E-value=9.6e-12 Score=116.69 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=93.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
-.+.+.+.++...+++|||+|||+|.++..+++.+|..+|+++|.|+.+++.++++++.++.....+++++..|.... +
T Consensus 216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~ 294 (378)
T PRK15001 216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V 294 (378)
T ss_pred HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C
Confidence 356777777766667999999999999999999988889999999999999999998765321123688888887542 2
Q ss_pred CCCCccEEEecccccCC---CC--HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCW---PS--PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~---~d--~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+++||+|+++-.+|.. .+ ..++++++.++|+++|.+.++.-
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 34689999998666543 22 24678888999999998777753
No 75
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.37 E-value=1.1e-11 Score=108.81 Aligned_cols=101 Identities=24% Similarity=0.281 Sum_probs=86.5
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEec
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~ 244 (319)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+ ..++.+..+|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 478999999999999999988766 79999999999999999876531 22688888998877644 3789999999
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
++++|+.++...++++.++++++|...
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~ 146 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILF 146 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEE
Confidence 999999999999999999999987644
No 76
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=2.6e-11 Score=112.93 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=92.2
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
-.+.+.+.+.....++|||+|||+|.++..+++.++..+|+++|+|+.+++.++++++.++ ...+++..|+...
T Consensus 184 gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~~-- 257 (342)
T PRK09489 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFSD-- 257 (342)
T ss_pred HHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEcccccc--
Confidence 3456666666555679999999999999999998887899999999999999999987752 2356777787542
Q ss_pred CCCCccEEEecccccCCC-----CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWP-----SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~-----d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+++||+|+++..+|+.. ....+++++.+.|+++|.+.++..
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 257899999998887632 246778899999999998876654
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.33 E-value=4e-11 Score=103.49 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=88.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~ 233 (319)
......+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.++++++..+ ...++.++.+|+.+. +.
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l~~ 107 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEILFT 107 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhHhh
Confidence 34445667778999999999999999988765 455689999999999999999887652 135789999998763 33
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
..+.||.|++.. ...++...++++.++|+|+|...+
T Consensus 108 ~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 108 INEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred cCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEE
Confidence 346899999864 244677889999999999887654
No 78
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.32 E-value=4.8e-11 Score=104.03 Aligned_cols=108 Identities=16% Similarity=0.084 Sum_probs=84.4
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
...+...+...++.+|||||||+|.++..+++... +++++|+++++++.++++++..+ ..++.+..+|..+....
T Consensus 67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCCCc
Confidence 45556667777889999999999999988887754 89999999999999999987652 44689999998653223
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
.++||+|++...+++++ +.+.+.|+++|...+.
T Consensus 142 ~~~fD~I~~~~~~~~~~------~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 142 YAPFDRILVTAAAPEIP------RALLEQLKEGGILVAP 174 (212)
T ss_pred CCCcCEEEEccCchhhh------HHHHHhcCCCcEEEEE
Confidence 47899999988777662 4567788887765443
No 79
>PRK14968 putative methyltransferase; Provisional
Probab=99.31 E-value=3.9e-11 Score=102.17 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=86.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
....+.+.+...++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++...+.. ..++.++.+|+.+ ++
T Consensus 11 ~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~-~~ 86 (188)
T PRK14968 11 DSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFE-PF 86 (188)
T ss_pred hHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEeccccc-cc
Confidence 34455555655678899999999999999999885 49999999999999999988664211 1128888888866 34
Q ss_pred CCCCccEEEecccccCCC---------------------CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWP---------------------SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~---------------------d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+++||+|+++..+.+.. ....+++++.++||++|...+++.
T Consensus 87 ~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 87 RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 456899999876543311 124568888899999887665544
No 80
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.30 E-value=1.1e-11 Score=97.48 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=82.9
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEEec
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG 244 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~ 244 (319)
|.+|||+|||+|.++..+++.+ ..+++|+|+++..++.+++++...+ ...+++++++|+.+.. +.+++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEEC
Confidence 4689999999999999999998 5699999999999999999988753 2457999999998865 678999999998
Q ss_pred ccccCCC-C-------HHHHHHHHHHhhcCCCeeEEEE
Q 020988 245 AALHCWP-S-------PSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 245 ~vl~h~~-d-------~~~~l~el~rvlk~g~~~g~~~ 274 (319)
--+.... + ...+++++.++||++|...++.
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7554321 1 2466888888888888777654
No 81
>PRK04266 fibrillarin; Provisional
Probab=99.30 E-value=6.9e-11 Score=103.85 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=79.9
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCC
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF 237 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~ 237 (319)
+...++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.++.+. ..++.++.+|+... ++. ++
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhcc-cc
Confidence 666788999999999999999999875445899999999999988777654 25789999998652 223 56
Q ss_pred ccEEEecccccCCCCHH---HHHHHHHHhhcCCCeeEEE
Q 020988 238 VDAVHAGAALHCWPSPS---NAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~ 273 (319)
||+|++. +.++. .+++++.++|||||.+.+.
T Consensus 142 ~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 142 VDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999853 33443 4589999999999988874
No 82
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.30 E-value=1e-11 Score=103.51 Aligned_cols=83 Identities=22% Similarity=0.181 Sum_probs=72.1
Q ss_pred EEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 194 ~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+|+|+|++|++.|+++....+.....+++++++|+.++|+.+++||+|++..+++|++|+..++++++|+|||||.+.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998876532111234799999999999999999999999999999999999999999999999999888
Q ss_pred Eee
Q 020988 274 QFR 276 (319)
Q Consensus 274 ~~~ 276 (319)
.+.
T Consensus 81 d~~ 83 (160)
T PLN02232 81 DFN 83 (160)
T ss_pred ECC
Confidence 774
No 83
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.30 E-value=5e-11 Score=110.88 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=95.3
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
...+.......++.+|||+|||+|.++..++..+. +++|+|+++.|++.++++++..+ ..++.++.+|+.++|+.
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g---~~~i~~~~~D~~~l~~~ 245 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYG---IEDFFVKRGDATKLPLS 245 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhC---CCCCeEEecchhcCCcc
Confidence 34455555567788999999999999988877665 99999999999999999987753 34588999999999988
Q ss_pred CCCccEEEecccc------c-C-CCC-HHHHHHHHHHhhcCCCeeEEEEeeccchhcc
Q 020988 235 SGFVDAVHAGAAL------H-C-WPS-PSNAASVFSSSYSLLSICYLLQFRYTKIIEL 283 (319)
Q Consensus 235 ~~~fD~V~~~~vl------~-h-~~d-~~~~l~el~rvlk~g~~~g~~~~~~~~~~~~ 283 (319)
+++||+|++.--. . + ..+ ...+++++.++|+++|....++.......+.
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~ 303 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL 303 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence 8899999996321 1 1 101 3678999999999999887776654444433
No 84
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.30 E-value=9.4e-11 Score=100.96 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=86.9
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~ 233 (319)
...+...+...++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.++++++..+ ..+++++.+|+.+ ++.
T Consensus 29 ~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 29 RLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHHhh
Confidence 345666777678899999999999999999877666799999999999999999887653 3578999998864 222
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
....+|.|+... ..+....++++.++|+|+|.+.+...
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 223467776532 23557889999999999887666554
No 85
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.30 E-value=7.9e-11 Score=102.89 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=88.4
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh---------cCccCCCCeEEEEcCCCCCCCC
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---------DNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
..++++||+.|||.|..+..|++.|. +|+|+|+|+.+++.+.+.... .......+++++++|+.+++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 34578999999999999999999998 899999999999998663210 0001235789999999998642
Q ss_pred ---CCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEee
Q 020988 235 ---SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 235 ---~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
.+.||+|+-..++++++.. .+..+.+.++++|++..-.+.+.
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 2689999999999999643 46688899999999888777764
No 86
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.26 E-value=2.9e-11 Score=104.17 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=78.4
Q ss_pred eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 020988 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (319)
.++|||||+|..++.++.... +|+|+|+|+.|++.|++..... +......+...++..|--.++++|+|++..++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~--y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVT--YCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcc--cccCCccccccccccccCCCcceeeehhhhhHH
Confidence 899999999988888888755 9999999999999998864321 111222333334444433489999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCC-eeEEEEee
Q 020988 249 CWPSPSNAASVFSSSYSLLS-ICYLLQFR 276 (319)
Q Consensus 249 h~~d~~~~l~el~rvlk~g~-~~g~~~~~ 276 (319)
++ |.+++.+++.|+||+-| .+.++.+.
T Consensus 112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 112 WF-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 98 88999999999998766 66666664
No 87
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.24 E-value=2e-10 Score=105.53 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=74.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCCCC----Cc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FV 238 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~----~f 238 (319)
.++.+|||+|||+|..+..+++... ..+|+|+|+|++|++.+++++.... ...++.++++|+.+ +++... ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCe
Confidence 3568999999999999999998854 3589999999999999999876531 12346778999976 344332 23
Q ss_pred cEEEecccccCCCC--HHHHHHHHHHhhcCCCee
Q 020988 239 DAVHAGAALHCWPS--PSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 239 D~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~ 270 (319)
.++++..++.|++. ...++++++++|+|||.+
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~ 173 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGL 173 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 34555567888853 234677777777776544
No 88
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.1e-10 Score=98.05 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=88.9
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
..++.+.+...++.+|||||||+|+.+.-+++... +|+.+|..+...+.|+++++..+ ..|+.++++|...=--.
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCCC
Confidence 45677788889999999999999999999999876 99999999999999999998873 55799999998764334
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
..+||.|+.+.+...+|.. +.+-||+||..-+-
T Consensus 136 ~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~P 168 (209)
T COG2518 136 EAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIP 168 (209)
T ss_pred CCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEE
Confidence 5899999999998888643 44556666654433
No 89
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.23 E-value=4.1e-10 Score=94.28 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
.+........|.+.++.+++|||||||..+..++..++..+|+++|-++++++..+++..+.+ .+|+.++.+++.+.
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHh
Confidence 334556677788899999999999999999999988999999999999999999999998873 78999999999764
Q ss_pred CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
--...++|.|+..+. . +.+..++.+...||++|..-.
T Consensus 97 L~~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 97 LPDLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred hcCCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEE
Confidence 212237999999988 4 446677778888888775543
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=99.23 E-value=2e-10 Score=101.00 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=78.3
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++... ..++.++.+|+.+. +.+++||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~----~~~~~~~~~d~~~~-~~~~~fD~Vi~ 107 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA----GVDVDVRRGDWARA-VEFRPFDVVVS 107 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh----CCeeEEEECchhhh-ccCCCeeEEEE
Confidence 4567899999999999999988864 358999999999999999988664 23578888898663 45679999999
Q ss_pred cccccCCCC---------------------HHHHHHHHHHhhcCCCeeEEE
Q 020988 244 GAALHCWPS---------------------PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 244 ~~vl~h~~d---------------------~~~~l~el~rvlk~g~~~g~~ 273 (319)
+-...+... ...+++++.++||++|.+.++
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 743221111 234567788888888876544
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.23 E-value=3e-10 Score=101.25 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
.+.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++....+ ..++.++.+|+.+ ++.+++||+|+++-
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG---LDNVTFLQSDWFE-PLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhc-cCcCCceeEEEECC
Confidence 4569999999999999999998777799999999999999999887652 3469999999876 45578999999853
No 92
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.22 E-value=3.3e-10 Score=103.21 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=62.6
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++....+ ...++.++.+|+.+ ++.+++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~-~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFE-PLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhc-cCcCCCccEEEEC
Confidence 69999999999999999998877799999999999999999987653 22359999999865 3444589999996
No 93
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=3e-10 Score=95.51 Aligned_cols=117 Identities=9% Similarity=0.080 Sum_probs=85.2
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+.+.+...++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++.. ..+++++.+|+.++++++.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~ 76 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKL 76 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCcccc
Confidence 344555566788999999999999999998854 999999999999999988753 3589999999999988777
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccchhccc
Q 020988 237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIELD 284 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~~~~~~ 284 (319)
+||.|+++--+ |+. ...+..+.+... ....+.+++.....+...
T Consensus 77 ~~d~vi~n~Py-~~~--~~~i~~~l~~~~-~~~~~~l~~q~e~a~rl~ 120 (169)
T smart00650 77 QPYKVVGNLPY-NIS--TPILFKLLEEPP-AFRDAVLMVQKEVARRLA 120 (169)
T ss_pred CCCEEEECCCc-ccH--HHHHHHHHhcCC-CcceEEEEEEHHHhHHhc
Confidence 89999886443 331 233333333211 336777777665554433
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.20 E-value=2.9e-10 Score=103.80 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=77.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++...++ ...++.+...+.. +..+++||+|+++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~~--~~~~~~fDlVvan 232 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYLE--QPIEGKADVIVAN 232 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecccc--cccCCCceEEEEe
Confidence 467899999999999998888775 3589999999999999999987653 2234566666533 2335799999997
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
...++ ...++.++.+++||+|.+.+..+
T Consensus 233 ~~~~~---l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 233 ILAEV---IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred cCHHH---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 65443 34678889999999887655444
No 95
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.20 E-value=3.5e-10 Score=102.96 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=64.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+ ...++.++.+|+.+ ++++++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~-~~~~~~fD~Iv~N 196 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFA-ALPGRKYDLIVSN 196 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhh-ccCCCCccEEEEC
Confidence 34579999999999999999998777799999999999999999987653 23479999999854 2345689999986
No 96
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=3.1e-10 Score=104.57 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=83.6
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
..+.+.+...++.+|||||||+|.++..+++... ...|+++|+++++++.|+++++..+ ..++.++.+|+...+..
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcccc
Confidence 3444555667789999999999999999988753 2469999999999999999887653 45789999998776555
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
.++||+|++...+++++ ..+.+.|+++|...+
T Consensus 147 ~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIV 178 (322)
T ss_pred cCCccEEEECCchHHhH------HHHHHhcCCCCEEEE
Confidence 57899999987766653 236678888876443
No 97
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.19 E-value=2.4e-10 Score=94.42 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=77.9
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (319)
.+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+...+..+ ....|+|.+.|+....+..++||+|+--+++
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccCCcccccceeEEeecCce
Confidence 49999999999999999999877779999999999999988776653 2334999999999877777899999976655
Q ss_pred cCC---CC-----HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 248 HCW---PS-----PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 248 ~h~---~d-----~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..+ +| +...+..+.++|+|+| ++++
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~g---ifvI 179 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGG---IFVI 179 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCc---EEEE
Confidence 433 12 1233445555655554 5544
No 98
>PHA03411 putative methyltransferase; Provisional
Probab=99.19 E-value=3.5e-10 Score=100.90 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=73.7
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE
Q 020988 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225 (319)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~ 225 (319)
..|+.|......+. +.....++|||+|||+|.++..+++..+..+|+|+|+++.+++.+++++ +++.+++
T Consensus 46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~ 115 (279)
T PHA03411 46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWIT 115 (279)
T ss_pred eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEE
Confidence 34666766653332 2334568999999999999988877654469999999999999998863 3688999
Q ss_pred cCCCCCCCCCCCccEEEecccccCCC
Q 020988 226 ADVCRLPFASGFVDAVHAGAALHCWP 251 (319)
Q Consensus 226 ~d~~~lp~~~~~fD~V~~~~vl~h~~ 251 (319)
+|+.++.. +++||+|+++..+.|.+
T Consensus 116 ~D~~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 116 SDVFEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred Cchhhhcc-cCCCcEEEEcCCccccC
Confidence 99988753 46899999998888754
No 99
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.18 E-value=2.1e-10 Score=97.50 Aligned_cols=100 Identities=27% Similarity=0.382 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC-CCCCCCCCccEEEec
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RLPFASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~V~~~ 244 (319)
.+.-|||||||+|.-+..+.+.|. ..+|+|+|+.|++.|.++-- .-+++.+|+- -+||+.++||.|++.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVEREL--------EGDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhh--------hcCeeeeecCCCCCCCCCccceEEEe
Confidence 478899999999999999999887 89999999999999986421 1357777874 489999999999998
Q ss_pred ccccCCC-------CHHH----HHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWP-------SPSN----AASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~-------d~~~----~l~el~rvlk~g~~~g~~~~ 275 (319)
.++.++- +|.. ++.-++.+++.++..-.-++
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 7766543 2332 34556667777765544433
No 100
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.17 E-value=1.7e-10 Score=100.02 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=79.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
...+.+.+...++.+|||||||+|+++..++.. ++...|+++|.++..++.|++++...+ ..++.++.+|...-..
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGTTG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhccc
Confidence 456667788889999999999999999999887 444479999999999999999998763 4589999999866433
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
...+||.|++......+| .. +.+.|+ ++|.+++
T Consensus 138 ~~apfD~I~v~~a~~~ip--~~----l~~qL~---~gGrLV~ 170 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP--EA----LLEQLK---PGGRLVA 170 (209)
T ss_dssp GG-SEEEEEESSBBSS----HH----HHHTEE---EEEEEEE
T ss_pred cCCCcCEEEEeeccchHH--HH----HHHhcC---CCcEEEE
Confidence 457999999999887664 22 444444 4555555
No 101
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.17 E-value=3.7e-10 Score=99.29 Aligned_cols=117 Identities=9% Similarity=0.133 Sum_probs=91.3
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA 234 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~ 234 (319)
.+..+......++|||+|||+|..+..++++.+..+++|||+.+.+.+.|+++++.++ +..+++++++|+.++. ..
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhccc
Confidence 4445555566899999999999999999998666899999999999999999987753 5689999999998864 33
Q ss_pred CCCccEEEecccccCCC------------------CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCWP------------------SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~------------------d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..+||+|+|+--..-.. +.+..++...+++|++|.+.++..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 45799999975433221 224456677778999988887766
No 102
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.17 E-value=4.3e-10 Score=84.66 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=80.8
Q ss_pred eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-CCCCccEEEecccc
Q 020988 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL 247 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~vl 247 (319)
+|+|+|||+|.++..+.+ ....+++++|+++.+++.+++..... ...++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999988 34569999999999999888533222 34678999999887653 45789999999999
Q ss_pred cC-CCCHHHHHHHHHHhhcCCCeeEE
Q 020988 248 HC-WPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 248 ~h-~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
++ ..+....++.+.+.++++|...+
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 99 77778888888999888775543
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.14 E-value=1.1e-09 Score=100.58 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=63.1
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
..+|||+|||+|.++..+++..+..+|+++|+|+.+++.|+++++..+ ...++.++.+|+.+ ++++++||+|+++
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~-~l~~~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFA-ALPGRRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhh-hCCCCCccEEEEC
Confidence 368999999999999999998777899999999999999999987653 22469999999854 2235689999986
No 104
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.12 E-value=7.5e-10 Score=96.73 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=85.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC---------ccCCCCeEEEEc
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRA 226 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~i~~~~~ 226 (319)
....+.+...++.+||..|||.|..+..|++.|. +|+|+|+|+.+++.+.+...... .....+|+++++
T Consensus 27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 3333335556778999999999999999999998 99999999999999854332100 012347899999
Q ss_pred CCCCCCCCC-CCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEE
Q 020988 227 DVCRLPFAS-GFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 227 d~~~lp~~~-~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~ 274 (319)
|+..++... ++||+|+=...|+-++. ..+..+.+.++++|++.+-++.
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 999987443 58999999998888853 3466778888888887743333
No 105
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.4e-09 Score=97.68 Aligned_cols=117 Identities=12% Similarity=0.224 Sum_probs=94.2
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
-.+.+.+-++...+++|||+|||.|.++..+++..|..+++-+|.|..+++.+++++..++ ..+..++..|..+ +.
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~---~~~~~v~~s~~~~-~v 221 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG---VENTEVWASNLYE-PV 221 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC---CCccEEEEecccc-cc
Confidence 3678888888777889999999999999999999999999999999999999999998763 3343455555543 44
Q ss_pred CCCCccEEEecccccCCCCH-----HHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSP-----SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~-----~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+ +||+|+++--+|-=.+. .+++++..+.|++||.+.++.-
T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 44 99999999877743332 2678888889999998888776
No 106
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.11 E-value=8.2e-10 Score=94.48 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=76.8
Q ss_pred HhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-------
Q 020988 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------- 232 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------- 232 (319)
+-...++.+|||+|||+|.++..+++.. ...+++++|+|+.+ . ..++.++++|+.+.+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~--------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P--------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c--------CCCceEEEeeCCChhHHHHHHH
Confidence 3345678999999999999999888774 34579999999854 1 246788888987643
Q ss_pred -CCCCCccEEEecccc--------cCCC---CHHHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988 233 -FASGFVDAVHAGAAL--------HCWP---SPSNAASVFSSSYSLLSICYLLQFRYTKI 280 (319)
Q Consensus 233 -~~~~~fD~V~~~~vl--------~h~~---d~~~~l~el~rvlk~g~~~g~~~~~~~~~ 280 (319)
+++++||+|++.... +|.. +...+++++.++|+|+|...+..+....+
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~ 152 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEI 152 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccH
Confidence 346789999986432 1111 12567889999999999887766654433
No 107
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.10 E-value=1.4e-09 Score=104.65 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
+.....+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++..+. ...+.+..+|....
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGP 301 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeccccccc
Confidence 3344566667777889999999999999999998875456999999999999999999987531 12334466776655
Q ss_pred CC--CCCCccEEEe------cccccCCCC----------------HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 PF--ASGFVDAVHA------GAALHCWPS----------------PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 p~--~~~~fD~V~~------~~vl~h~~d----------------~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+. .+++||.|++ .+++.+.++ ..+.+.++.+++||||.......
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 43 4678999995 346766665 24567778888888766554433
No 108
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.7e-09 Score=94.46 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=100.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
...+...+...++.+|||.|.|+|.++..++.. ++..+|+.+|+.++..+.|+++++..+ ...++++..+|+.+.-+
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEecccccccc
Confidence 456667788899999999999999999999964 667899999999999999999998863 33458999999988766
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccchh
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKII 281 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~~~ 281 (319)
.+ .||+|+. -+++|.++++.+.++|+||+....+.....+..
T Consensus 161 ~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~ 202 (256)
T COG2519 161 EE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVE 202 (256)
T ss_pred cc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHH
Confidence 54 9999987 589999999999999999987777776444443
No 109
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=1.5e-09 Score=104.61 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
+.....+...+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+ ..++.++.+|+..
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g---~~~v~~~~~D~~~ 314 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG---LKSIKILAADSRN 314 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC---CCeEEEEeCChhh
Confidence 3344555566777789999999999999999888863 34589999999999999999988763 4578999999987
Q ss_pred CC----CCCCCccEEEec------ccccCCCC----------------HHHHHHHHHHhhcCCCeeE
Q 020988 231 LP----FASGFVDAVHAG------AALHCWPS----------------PSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 231 lp----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~el~rvlk~g~~~g 271 (319)
++ ...++||.|++. +++.+-++ ..+.++++.+++||||.+.
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv 381 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV 381 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 75 445789999963 46666555 2355677777777776554
No 110
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.09 E-value=1.3e-09 Score=97.52 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=69.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++..++. ..++.+..+ +.+||+|+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvan 186 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVAN 186 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEc
Confidence 4689999999999999998888765 3699999999999999999876421 122222222 2279999986
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
...+. ....++++.+++||+|.+.+..
T Consensus 187 i~~~~---~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 187 ILANP---LLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred CcHHH---HHHHHHHHHHhcCCCcEEEEEE
Confidence 54322 3466788888988887665543
No 111
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=2.4e-09 Score=103.08 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=85.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (319)
...+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++..+ .++.++.+|+.+++
T Consensus 233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQW 308 (427)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchhh
Confidence 345555667778999999999999999999988755699999999999999999987753 24688999998764
Q ss_pred CCCCCccEEEecc------cccCCC------CH----------HHHHHHHHHhhcCCCeeEEEE
Q 020988 233 FASGFVDAVHAGA------ALHCWP------SP----------SNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 233 ~~~~~fD~V~~~~------vl~h~~------d~----------~~~l~el~rvlk~g~~~g~~~ 274 (319)
+.+++||.|++.. ++.+-+ .+ .+.++.+.++|||||......
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 3457899999522 222221 22 245777777888877655443
No 112
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.08 E-value=8.9e-11 Score=100.33 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=87.0
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE
Q 020988 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225 (319)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~ 225 (319)
-++..|....+++.. ....+-.++||+|||||.+...+..... +++|+|+|.+|++.|.++--- . ++.+
T Consensus 106 L~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~Y------D--~L~~ 174 (287)
T COG4976 106 LGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLY------D--TLYV 174 (287)
T ss_pred hcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccch------H--HHHH
Confidence 456666555444443 3334467999999999999999988866 899999999999999886311 1 2344
Q ss_pred cCCCC-CC-CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 226 ADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 226 ~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
+|+.. ++ ..++.||+|++..|+-++.+.+..+.-....|+++| ++.|+..
T Consensus 175 Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gG---lfaFSvE 226 (287)
T COG4976 175 AEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGG---LFAFSVE 226 (287)
T ss_pred HHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCc---eEEEEec
Confidence 55442 22 346899999999999999999998888878777665 5556443
No 113
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.07 E-value=2.6e-09 Score=96.62 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=67.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+...+...++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++... ...++.++.+|+... +.+
T Consensus 98 ~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~-~~~ 173 (275)
T PRK09328 98 EWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP-LPG 173 (275)
T ss_pred HHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc-CCC
Confidence 3333334455678999999999999999999887779999999999999999987621 245899999998553 335
Q ss_pred CCccEEEec
Q 020988 236 GFVDAVHAG 244 (319)
Q Consensus 236 ~~fD~V~~~ 244 (319)
++||+|+++
T Consensus 174 ~~fD~Iv~n 182 (275)
T PRK09328 174 GRFDLIVSN 182 (275)
T ss_pred CceeEEEEC
Confidence 789999985
No 114
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.07 E-value=1.7e-09 Score=92.91 Aligned_cols=95 Identities=18% Similarity=0.348 Sum_probs=76.1
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CC--CCCCCccEEEec
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP--FASGFVDAVHAG 244 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp--~~~~~fD~V~~~ 244 (319)
..+||||||.|.++..+++..|+..++|+|+....+..+.+++... ...|+.++++|+.. ++ ++++++|.|+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 4999999999999999999999999999999999999999988876 47899999999987 32 456899999885
Q ss_pred ccccCCCCH-------------HHHHHHHHHhhcCCCee
Q 020988 245 AALHCWPSP-------------SNAASVFSSSYSLLSIC 270 (319)
Q Consensus 245 ~vl~h~~d~-------------~~~l~el~rvlk~g~~~ 270 (319)
+||| ...++++.++|++||..
T Consensus 96 -----FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 96 -----FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp -----S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred -----CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 4444 36688889998887644
No 115
>PTZ00146 fibrillarin; Provisional
Probab=99.07 E-value=2.1e-09 Score=96.91 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=76.7
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---CCCCCCc
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGFV 238 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~f 238 (319)
...++.+|||+|||+|.++..+++.. +...|+++|+++.+.+...+..+. ..|+.++.+|+... ....++|
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCCC
Confidence 45688999999999999999999884 445899999999766555544332 25888999998642 2234589
Q ss_pred cEEEecccccCCCCH-HHHHHHHHHhhcCCCeeEEE
Q 020988 239 DAVHAGAALHCWPSP-SNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 239 D~V~~~~vl~h~~d~-~~~l~el~rvlk~g~~~g~~ 273 (319)
|+|++... .+|. ..++.++.++||+++.+.+.
T Consensus 204 DvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 99998764 2343 35566899999999987773
No 116
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.06 E-value=3.8e-09 Score=99.67 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-CCCCccEEEec
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~ 244 (319)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++.+.. ..+++++++|+.+..+ .+++||+|+++
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccccccCCCccEEEEC
Confidence 457999999999999999988777779999999999999999998764 2479999999865433 24589999996
Q ss_pred c
Q 020988 245 A 245 (319)
Q Consensus 245 ~ 245 (319)
-
T Consensus 327 P 327 (423)
T PRK14966 327 P 327 (423)
T ss_pred C
Confidence 5
No 117
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.6e-09 Score=96.48 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=76.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.++. .++.+|||+|||+|-++..+++.|. .+|+|+|+++.+++.+++++..++-. ..+.....+....+ .
T Consensus 153 L~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~--~~~~~~~~~~~~~~-~ 226 (300)
T COG2264 153 LEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVE--LLVQAKGFLLLEVP-E 226 (300)
T ss_pred HHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCc--hhhhcccccchhhc-c
Confidence 44555544 3789999999999999999999985 57999999999999999998875311 11122222332222 2
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
.++||+|+++= |-++ ...+..++.+.+||+|...+-
T Consensus 227 ~~~~DvIVANI-LA~v--l~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 227 NGPFDVIVANI-LAEV--LVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred cCcccEEEehh-hHHH--HHHHHHHHHHHcCCCceEEEE
Confidence 36999999974 2221 235667788898887665444
No 118
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.02 E-value=1.6e-09 Score=100.12 Aligned_cols=110 Identities=14% Similarity=0.214 Sum_probs=79.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF- 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~- 233 (319)
++.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++++..+ ..+++++++|+.++..
T Consensus 162 ~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~---l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 162 YATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELG---LTNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEcCHHHHHHh
Confidence 34445555545678999999999999999998765 99999999999999999987753 3579999999977542
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..++||+|++.-- ......++.+.+...++..+++.
T Consensus 237 ~~~~~D~Vv~dPP------r~G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 237 QGEVPDLVLVNPP------RRGIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred cCCCCeEEEECCC------CCCccHHHHHHHHHcCCCeEEEE
Confidence 2357999998632 11122334444444555556655
No 119
>PRK00811 spermidine synthase; Provisional
Probab=99.01 E-value=3.4e-09 Score=96.44 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=79.5
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--CCCCeEEEEcCCCCC-CCCCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRL-PFASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~i~~~~~d~~~l-p~~~~~fD~V 241 (319)
..+.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+...+.. ..++++++.+|+... ...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3567999999999999999988744468999999999999999988642211 256899999998653 3345789999
Q ss_pred EecccccCCCC----HHHHHHHHHHhhcCCCeeEE
Q 020988 242 HAGAALHCWPS----PSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 242 ~~~~vl~h~~d----~~~~l~el~rvlk~g~~~g~ 272 (319)
++...-.+.+. ...+++.+++.|+++|....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 98543222221 14557778888888776543
No 120
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=6.9e-10 Score=95.75 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=80.6
Q ss_pred CeEEEEcCCcChHHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----CCCCCCCccEE
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAV 241 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~V 241 (319)
.+|||||||.|.....+.+..++ ..+++.|.|+.+++..+++.... ..++...+.|+.. -|...+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence 38999999999999999998776 78999999999999998865432 3455555556543 24667999999
Q ss_pred EecccccCCCCHH---HHHHHHHHhhcCCCeeEEEEeeccchhc
Q 020988 242 HAGAALHCWPSPS---NAASVFSSSYSLLSICYLLQFRYTKIIE 282 (319)
Q Consensus 242 ~~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~~~~~~~~~ 282 (319)
++.+||..++ |+ .++..+.+++|| +|.++|.+|+..+
T Consensus 149 t~IFvLSAi~-pek~~~a~~nl~~llKP---GG~llfrDYg~~D 188 (264)
T KOG2361|consen 149 TLIFVLSAIH-PEKMQSVIKNLRTLLKP---GGSLLFRDYGRYD 188 (264)
T ss_pred EEEEEEeccC-hHHHHHHHHHHHHHhCC---CcEEEEeecccch
Confidence 9999999884 44 456666666665 5577776665543
No 121
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=5.7e-09 Score=100.37 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=84.2
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
....+...+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+ ..++.++.+|+..++
T Consensus 225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~~v~~~~~Da~~l~ 301 (431)
T PRK14903 225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LSSIEIKIADAERLT 301 (431)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhhhh
Confidence 34455556677788999999999999998888763 34699999999999999999998763 346889999998776
Q ss_pred -CCCCCccEEEec------ccccCCCCH----------------HHHHHHHHHhhcCCCee
Q 020988 233 -FASGFVDAVHAG------AALHCWPSP----------------SNAASVFSSSYSLLSIC 270 (319)
Q Consensus 233 -~~~~~fD~V~~~------~vl~h~~d~----------------~~~l~el~rvlk~g~~~ 270 (319)
+.+++||.|++. +++.+-++. .+.+.++.+++||||..
T Consensus 302 ~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~L 362 (431)
T PRK14903 302 EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGIL 362 (431)
T ss_pred hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 446789999962 233332221 23466666777777654
No 122
>PRK04457 spermidine synthase; Provisional
Probab=99.00 E-value=4.1e-09 Score=94.82 Aligned_cols=109 Identities=7% Similarity=0.066 Sum_probs=81.8
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCccEEE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVH 242 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~ 242 (319)
..++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...+ ..++++++.+|+.+. +-..++||+|+
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 345679999999999999999988888899999999999999999875421 236899999998552 22236899999
Q ss_pred eccccc--CCC---CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGAALH--CWP---SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~vl~--h~~---d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+.. +. ..+ ....+++++.++|+|+|.+.+-.+
T Consensus 142 ~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 142 VDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred EeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 742 21 111 125778889999998887665433
No 123
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.99 E-value=5.1e-09 Score=94.39 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=67.8
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
....+...++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++..+ ..++.++..|...++...+
T Consensus 63 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~~ 139 (264)
T TIGR00446 63 PPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG---VLNVAVTNFDGRVFGAAVP 139 (264)
T ss_pred HHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEecCCHHHhhhhcc
Confidence 33455667889999999999999998887642 3589999999999999999998763 3578999999887665556
Q ss_pred CccEEEe
Q 020988 237 FVDAVHA 243 (319)
Q Consensus 237 ~fD~V~~ 243 (319)
.||+|++
T Consensus 140 ~fD~Vl~ 146 (264)
T TIGR00446 140 KFDAILL 146 (264)
T ss_pred CCCEEEE
Confidence 7999996
No 124
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.99 E-value=1.2e-08 Score=91.24 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=59.4
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC-CCCCccEEEec
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG 244 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V~~~ 244 (319)
+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++.. +++++++|+.+. +- ..++||+|+++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcchhcCCCEeEEEEC
Confidence 45899999999999999988766668999999999999999998763 357889998653 21 13579999987
Q ss_pred c
Q 020988 245 A 245 (319)
Q Consensus 245 ~ 245 (319)
-
T Consensus 161 P 161 (251)
T TIGR03704 161 A 161 (251)
T ss_pred C
Confidence 4
No 125
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.98 E-value=9.9e-09 Score=100.56 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++...+ ...++.++.+|+.+ ++.+++||+|+++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~-~~~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFE-NIEKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--Cccceeeeecchhh-hCcCCCccEEEEC
Confidence 3468999999999999999887777799999999999999999987642 23478999999754 2335689999995
No 126
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=6.9e-09 Score=100.43 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=83.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (319)
...+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..+ ..++.++.+|+..++
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~ 315 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG---LTNIETKALDARKVHE 315 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCCcccccc
Confidence 3455556666788999999999999999988863 45699999999999999999987753 346899999998763
Q ss_pred -CCCCCccEEEecc------cccCCCCH----------------HHHHHHHHHhhcCCCee
Q 020988 233 -FASGFVDAVHAGA------ALHCWPSP----------------SNAASVFSSSYSLLSIC 270 (319)
Q Consensus 233 -~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~el~rvlk~g~~~ 270 (319)
+. ++||+|++.. ++.+-++. ...++++.+++||||..
T Consensus 316 ~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l 375 (444)
T PRK14902 316 KFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL 375 (444)
T ss_pred hhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 33 6899999742 23332221 23566677777777654
No 127
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.97 E-value=1e-08 Score=90.84 Aligned_cols=116 Identities=18% Similarity=0.249 Sum_probs=92.1
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
....+...+...||.+|||.|.|+|.++..+++. ++..+|+..|+.++..+.|+++++..+ ...++++...|+.+..
T Consensus 28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGCG-
T ss_pred hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceeccc
Confidence 3456777788899999999999999999999976 677899999999999999999998864 4568999999996544
Q ss_pred CC---CCCccEEEecccccCCCCHHHHHHHHHHhh-cCCCeeEEEEee
Q 020988 233 FA---SGFVDAVHAGAALHCWPSPSNAASVFSSSY-SLLSICYLLQFR 276 (319)
Q Consensus 233 ~~---~~~fD~V~~~~vl~h~~d~~~~l~el~rvl-k~g~~~g~~~~~ 276 (319)
+. +..+|.|+. -+|+|..++..+.++| |+||....+...
T Consensus 106 ~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 106 FDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp -STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred ccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence 42 367999977 4899999999999999 899888888773
No 128
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.96 E-value=9.3e-09 Score=91.40 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=75.4
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (319)
+.......+..+|||||+|+|.++..+++..|+.+++.+|+ |.+++.+++ ..+++++.+|+. -+++.
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~-- 158 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV-- 158 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--
Confidence 33444445667999999999999999999999999999999 888888887 259999999998 56664
Q ss_pred ccEEEecccccCCCCHH--HHHHHHHHhhcCC
Q 020988 238 VDAVHAGAALHCWPSPS--NAASVFSSSYSLL 267 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g 267 (319)
+|+|++.++||+++|.+ ..|+.+++.++|+
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 99999999999997643 4456666666666
No 129
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.96 E-value=4.1e-09 Score=95.44 Aligned_cols=84 Identities=12% Similarity=0.188 Sum_probs=68.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+...++.+|||||||+|.++..+++.++ +|+|+|+++.+++.+++++.. .+++++.+|+.++++
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE------DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc------CceEEEEChhhcCCH
Confidence 345566666667888999999999999999999976 999999999999999987632 589999999999876
Q ss_pred CCCCccEEEecc
Q 020988 234 ASGFVDAVHAGA 245 (319)
Q Consensus 234 ~~~~fD~V~~~~ 245 (319)
.+-.+|.|+++-
T Consensus 102 ~~~~~~~vv~Nl 113 (272)
T PRK00274 102 SELQPLKVVANL 113 (272)
T ss_pred HHcCcceEEEeC
Confidence 542257777764
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=1.4e-08 Score=98.21 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=67.8
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
......+...++.+|||+|||+|..+..+++.. ...+|+++|+|+.+++.++++++..+ ..+++++.+|+..++ +
T Consensus 240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG---ITIIETIEGDARSFS-P 315 (445)
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC---CCeEEEEeCcccccc-c
Confidence 344455666788999999999999988887653 23489999999999999999998763 347899999998875 4
Q ss_pred CCCccEEEe
Q 020988 235 SGFVDAVHA 243 (319)
Q Consensus 235 ~~~fD~V~~ 243 (319)
+++||+|++
T Consensus 316 ~~~fD~Vl~ 324 (445)
T PRK14904 316 EEQPDAILL 324 (445)
T ss_pred CCCCCEEEE
Confidence 578999996
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.95 E-value=6.4e-09 Score=100.59 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=69.4
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---- 230 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~---- 230 (319)
.+.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++..+ ..+++++.+|+.+
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHhhhh
Confidence 45555666666788999999999999999998865 99999999999999999987653 3579999999864
Q ss_pred CCCCCCCccEEEec
Q 020988 231 LPFASGFVDAVHAG 244 (319)
Q Consensus 231 lp~~~~~fD~V~~~ 244 (319)
+++.+++||+|++.
T Consensus 361 ~~~~~~~fD~Vi~d 374 (443)
T PRK13168 361 QPWALGGFDKVLLD 374 (443)
T ss_pred hhhhcCCCCEEEEC
Confidence 23445789999884
No 132
>PHA03412 putative methyltransferase; Provisional
Probab=98.94 E-value=8.5e-09 Score=90.09 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=70.8
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC---CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeE
Q 020988 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222 (319)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~ 222 (319)
..|+.|....+.+... ...+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++. .++.
T Consensus 31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~ 100 (241)
T PHA03412 31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEAT 100 (241)
T ss_pred CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCE
Confidence 4577777775554322 2347899999999999999888752 2458999999999999999864 3678
Q ss_pred EEEcCCCCCCCCCCCccEEEeccccc
Q 020988 223 LVRADVCRLPFASGFVDAVHAGAALH 248 (319)
Q Consensus 223 ~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (319)
++.+|+...++ +++||+|+++--+.
T Consensus 101 ~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 101 WINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred EEEcchhcccc-cCCccEEEECCCCC
Confidence 99999987665 46899999975333
No 133
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.93 E-value=1.8e-08 Score=93.37 Aligned_cols=116 Identities=23% Similarity=0.186 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-------cCCCCeEEEEcCCCCC------C
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRL------P 232 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~i~~~~~d~~~l------p 232 (319)
++.+|||+|||-|.-+.-....+ ...++|+|++...++.|++|.++.+. ...-...++.+|.... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 68899999999988776666654 36899999999999999999933110 0112456788887542 2
Q ss_pred CCCCCccEEEecccccCCCCHHHHHH-HHHHhhcCCCeeEEEEeeccchhc
Q 020988 233 FASGFVDAVHAGAALHCWPSPSNAAS-VFSSSYSLLSICYLLQFRYTKIIE 282 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~-el~rvlk~g~~~g~~~~~~~~~~~ 282 (319)
.....||+|.|.++||+.-..+...+ -+..+.+.++++|.++.+......
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 22359999999999999765543333 344466666667777665444443
No 134
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.5e-08 Score=84.66 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=64.8
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
..-.+.+|+|+|||||.++..++-.|+ ..|+|+|+++++++.++++.++ ...++.++.+|+.+.. ..+|+|+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~----l~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE----LLGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh----hCCceEEEEcchhhcC---CccceEE
Confidence 345678899999999999999988885 6899999999999999999877 3678999999999874 6788998
Q ss_pred ecc
Q 020988 243 AGA 245 (319)
Q Consensus 243 ~~~ 245 (319)
++-
T Consensus 114 mNP 116 (198)
T COG2263 114 MNP 116 (198)
T ss_pred ECC
Confidence 864
No 135
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.91 E-value=1e-08 Score=92.07 Aligned_cols=84 Identities=15% Similarity=0.279 Sum_probs=69.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++++.. ..+++++.+|+.+++++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccCCch
Confidence 34555566666789999999999999999999865 899999999999999988743 35899999999988765
Q ss_pred CCCccEEEecccc
Q 020988 235 SGFVDAVHAGAAL 247 (319)
Q Consensus 235 ~~~fD~V~~~~vl 247 (319)
.||.|+++--.
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999887553
No 136
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.90 E-value=8e-09 Score=93.95 Aligned_cols=99 Identities=22% Similarity=0.241 Sum_probs=67.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||+|||+|-++..+++.|. .+|+|+|+++.+++.|++++..++ ...++.+ ....+. ..++||+|+++
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~--~~~~~~v--~~~~~~--~~~~~dlvvAN 232 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNG--VEDRIEV--SLSEDL--VEGKFDLVVAN 232 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEE--SCTSCT--CCS-EEEEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcC--CCeeEEE--EEeccc--ccccCCEEEEC
Confidence 5678999999999999999999885 589999999999999999998764 2234433 222222 34899999986
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
-..+- .......+.++++++ |.++++
T Consensus 233 I~~~v---L~~l~~~~~~~l~~~---G~lIlS 258 (295)
T PF06325_consen 233 ILADV---LLELAPDIASLLKPG---GYLILS 258 (295)
T ss_dssp S-HHH---HHHHHHHCHHHEEEE---EEEEEE
T ss_pred CCHHH---HHHHHHHHHHhhCCC---CEEEEc
Confidence 43221 123445566666665 455553
No 137
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.88 E-value=1.7e-08 Score=88.46 Aligned_cols=110 Identities=13% Similarity=0.178 Sum_probs=84.2
Q ss_pred HHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C--CCC
Q 020988 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FAS 235 (319)
Q Consensus 159 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~ 235 (319)
.+.+.......+||||||.|.++..+++..|...++|||+....+..|.+++.+.+ ..|+.+++.|+..+ + +++
T Consensus 41 ~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~ 117 (227)
T COG0220 41 SALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPD 117 (227)
T ss_pred HHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCC
Confidence 34444444468999999999999999999999999999999999999999998863 33999999999764 1 345
Q ss_pred CCccEEEecccccCCCCH--------HHHHHHHHHhhcCCCeeE
Q 020988 236 GFVDAVHAGAALHCWPSP--------SNAASVFSSSYSLLSICY 271 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~--------~~~l~el~rvlk~g~~~g 271 (319)
++.|-|+.++.=-|.... ...++.+.++|+++|.+.
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 699999986422211111 356888899988886544
No 138
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.88 E-value=3.7e-08 Score=87.16 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
...+.+..+....++.+|||||||+|.-+..++.. ....+++++|+++++++.|+++++..+ ...+++++.+|+.+.
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~ 132 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSA 132 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHH
Confidence 33455555556667899999999999988777765 335699999999999999999998864 346799999998663
Q ss_pred -C-----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 232 -P-----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 232 -p-----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
+ ..+++||+|++...= +.....+.++.++++|||.
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ 173 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGI 173 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeE
Confidence 2 124689999885321 2234567777777777754
No 139
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.87 E-value=3.8e-08 Score=88.22 Aligned_cols=109 Identities=10% Similarity=0.134 Sum_probs=78.7
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|.++..+++.++ .++++|+++.+++.+++++.. ..+++++.+|+.++++.
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCChh
Confidence 34555556666789999999999999999999986 799999999999999987642 35899999999988865
Q ss_pred CCCcc---EEEecccccCCCCHHHHHHHHHHhh-cCCCeeEEEEeecc
Q 020988 235 SGFVD---AVHAGAALHCWPSPSNAASVFSSSY-SLLSICYLLQFRYT 278 (319)
Q Consensus 235 ~~~fD---~V~~~~vl~h~~d~~~~l~el~rvl-k~g~~~g~~~~~~~ 278 (319)
.+| +|+++-. .|+ ....+.+++ .++....++++...
T Consensus 91 --~~d~~~~vvsNlP-y~i-----~~~il~~ll~~~~~~~~~~~~q~e 130 (253)
T TIGR00755 91 --DFPKQLKVVSNLP-YNI-----SSPLIFKLLEKPKFRLAVLMVQKE 130 (253)
T ss_pred --HcCCcceEEEcCC-hhh-----HHHHHHHHhccCCCceEEEEehHH
Confidence 466 5655433 333 123344444 55555566666444
No 140
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.84 E-value=1.6e-08 Score=86.07 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=76.8
Q ss_pred hhhhhhhcCch-hhHHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhccC-CCeEEEEcCCcChHHHHHHhhCCCCeEEEEe
Q 020988 120 PASTELFRSPF-VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALD 197 (319)
Q Consensus 120 ~~~~~~~~~~~-~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD 197 (319)
..+.++|.++. .-..|+.++++.... +|. .-.+.+.+++...+ ...|-|+|||.+.++..+.+ .. .|...|
T Consensus 28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~--WP~--nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~-~~--~V~SfD 100 (219)
T PF05148_consen 28 EEALKLFQEDPELFDIYHEGFRQQVKK--WPV--NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN-KH--KVHSFD 100 (219)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHCT--SSS---HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEE
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhc--CCC--CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc-Cc--eEEEee
Confidence 34455555433 333566776665442 322 23456666665444 56899999999999866542 23 799999
Q ss_pred CCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 198 FSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 198 ~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+-.. +-.+..+|+..+|++++++|+++.+.+|-.. |....++|..|+||++|.+-+.-
T Consensus 101 Lva~------------------n~~Vtacdia~vPL~~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 101 LVAP------------------NPRVTACDIANVPLEDESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp SS-S------------------STTEEES-TTS-S--TT-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCC------------------CCCEEEecCccCcCCCCceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEE
Confidence 8542 3347789999999999999999999988876 88899999999999887655443
No 141
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.84 E-value=1.4e-07 Score=81.36 Aligned_cols=118 Identities=10% Similarity=0.092 Sum_probs=78.5
Q ss_pred HHHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC
Q 020988 156 KMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF 233 (319)
Q Consensus 156 ~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~ 233 (319)
+.+...+.. .++.+|||+|||+|.++..++..+. .+|+++|.++.+++.++++++..+ ..++.++.+|+.+. +.
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D~~~~l~~ 117 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTNALSFLAQ 117 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEchHHHHHhh
Confidence 344444432 4578999999999999987655553 599999999999999999987753 34789999998652 22
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccc
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTK 279 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~ 279 (319)
..++||+|++.--... .-...+++.+.. ...+.+.++++.+...
T Consensus 118 ~~~~fDlV~~DPPy~~-g~~~~~l~~l~~-~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 118 PGTPHNVVFVDPPFRK-GLLEETINLLED-NGWLADEALIYVESEV 161 (199)
T ss_pred cCCCceEEEECCCCCC-ChHHHHHHHHHH-CCCcCCCcEEEEEecC
Confidence 2457999998755321 112233333322 1223566777775443
No 142
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.82 E-value=5e-08 Score=85.08 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=92.1
Q ss_pred cCCCchhhhhhhcCchhh-HHhHHhHHHhhhhCCCCCcHHHHHHHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCe
Q 020988 115 YTEVKPASTELFRSPFVS-FLYERGWRQNFNRSGFPGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSG 192 (319)
Q Consensus 115 y~~~~~~~~~~~~~~~~s-~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~ 192 (319)
|......+..+|..+... ..|+.+++..... +|. .-.+.+.+.+.. .....|-|+|||.+.++. .. ...
T Consensus 131 Yt~~s~~A~~lfkedp~afdlYH~gfr~QV~k--WP~--nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~k 201 (325)
T KOG3045|consen 131 YTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKK--WPE--NPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHK 201 (325)
T ss_pred ccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHh--CCC--ChHHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccc
Confidence 444434445566543322 3466666655433 221 123444444443 456789999999998865 22 237
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 193 v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
|+.+|+-. .+-+++.+|+.++|+++++.|+++.+.+|--. |....++|+.|+|++||..++
T Consensus 202 V~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt-n~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 202 VHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMGT-NLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred eeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhhcc-cHHHHHHHHHHHhccCceEEE
Confidence 99999843 35568899999999999999999999888755 889999999999999998887
Q ss_pred EEe
Q 020988 273 LQF 275 (319)
Q Consensus 273 ~~~ 275 (319)
--.
T Consensus 263 AEv 265 (325)
T KOG3045|consen 263 AEV 265 (325)
T ss_pred Eeh
Confidence 655
No 143
>PRK04148 hypothetical protein; Provisional
Probab=98.81 E-value=8.5e-08 Score=76.68 Aligned_cols=97 Identities=12% Similarity=0.220 Sum_probs=70.3
Q ss_pred HHHHHHhhccCCCeEEEEcCCcCh-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
+.+.+.+...++.++||||||+|. ++..+.+.|. .|+++|+++..++.++++ .++++++|+.+.++.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCHH
Confidence 344455555567899999999996 8888888877 999999999999888775 567899999886543
Q ss_pred -CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 235 -SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 235 -~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
-+.+|+|++.. -|.+...-+.++.+..+..
T Consensus 74 ~y~~a~liysir------pp~el~~~~~~la~~~~~~ 104 (134)
T PRK04148 74 IYKNAKLIYSIR------PPRDLQPFILELAKKINVP 104 (134)
T ss_pred HHhcCCEEEEeC------CCHHHHHHHHHHHHHcCCC
Confidence 36789998842 3334444455555544433
No 144
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.81 E-value=3.3e-08 Score=90.24 Aligned_cols=85 Identities=16% Similarity=0.297 Sum_probs=69.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++...+ ...+++++.+|+.+.++
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~~~- 99 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKTEF- 99 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhhcc-
Confidence 34555556667889999999999999999998865 89999999999999999886532 13689999999988765
Q ss_pred CCCccEEEecc
Q 020988 235 SGFVDAVHAGA 245 (319)
Q Consensus 235 ~~~fD~V~~~~ 245 (319)
..||.|+++-
T Consensus 100 -~~~d~VvaNl 109 (294)
T PTZ00338 100 -PYFDVCVANV 109 (294)
T ss_pred -cccCEEEecC
Confidence 3689888753
No 145
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.80 E-value=1.6e-08 Score=91.14 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=97.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
-.+..|||||||+|.++..+++.|. .+|++++.|+ |.++|++.++.++ ...+|.++.|.+++..++ ++.|+|++-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N~--~~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASNN--LADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcCC--ccceEEEccCccccccCc-hhccEEEec
Confidence 4678999999999999998888874 6899999864 9999999887763 678999999999998876 689999985
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccc-----------hhc-ccCCccccccccccccCCCCCC-cceEEEE
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTK-----------IIE-LDNDNLILHPRRGQVNNSGQEP-GTAVFFE 311 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 311 (319)
-.-.-+-+ ++.++...-..|.++|.|.+..+... +.+ ....+.|+......++-...+. +..-+|+
T Consensus 251 PMG~mL~N-ERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFr 329 (517)
T KOG1500|consen 251 PMGYMLVN-ERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFR 329 (517)
T ss_pred cchhhhhh-HHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhc
Confidence 43222323 34444333333455555555442111 111 2233445555555555443332 2233899
Q ss_pred eeeeccC
Q 020988 312 RVVLETY 318 (319)
Q Consensus 312 ~~~~~~~ 318 (319)
++|+|||
T Consensus 330 QPvVDtF 336 (517)
T KOG1500|consen 330 QPVVDTF 336 (517)
T ss_pred ccccccc
Confidence 9999987
No 146
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.80 E-value=4.1e-08 Score=86.34 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
...++||||+|.|..+..++.... +|+++|.|+.|....+++ +++++.. .+..-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl~~--~~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVLDI--DDWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEEeh--hhhhccCCceEEEeehh
Confidence 457899999999999999988766 999999999997766653 4444433 33333356899999999
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
+|..-.+|...+++|++.++|.|..-
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~li 185 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLI 185 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999976543
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=98.80 E-value=3.8e-08 Score=91.26 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=76.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH--Hhh--cCccCCCCeEEEEcCCCC-CCCCCCCcc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQ--DNTILTSNLALVRADVCR-LPFASGFVD 239 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~--~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD 239 (319)
..+.+||+||||+|..++.+.+..+..+|+++|+++++++.|++. +.. .+....++++++.+|+.+ ++-..+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999999876556999999999999999962 111 011125789999999876 344457899
Q ss_pred EEEecccc--cC-CC--CHHHHHHHHHHhhcCCCeeEE
Q 020988 240 AVHAGAAL--HC-WP--SPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 240 ~V~~~~vl--~h-~~--d~~~~l~el~rvlk~g~~~g~ 272 (319)
+|++...- .. .. -...+++.+++.|+|+|.+..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~ 266 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVC 266 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99986310 00 00 013567788888888876533
No 148
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.80 E-value=7.6e-08 Score=87.07 Aligned_cols=108 Identities=11% Similarity=0.100 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCC-CCCCCCccEEEe
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA 243 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 243 (319)
.+.+|||||||+|.++..+.+..+..+++++|+++++++.+++.+...+ ....++++++.+|..+. ...+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4569999999999999999887655689999999999999999875432 11235788888887542 222478999998
Q ss_pred cccccCCCC----HHHHHHHHHHhhcCCCeeEEE
Q 020988 244 GAALHCWPS----PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 244 ~~vl~h~~d----~~~~l~el~rvlk~g~~~g~~ 273 (319)
......-+. ...+++.+.+.|+|+|.....
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 654221111 346677888888888765543
No 149
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.78 E-value=2.2e-07 Score=76.02 Aligned_cols=121 Identities=12% Similarity=0.242 Sum_probs=94.4
Q ss_pred CCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc
Q 020988 148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (319)
Q Consensus 148 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~ 226 (319)
.|......+.|...+....+..|||+|.|||.++..+.+++ +...++.+|.|++......+++ +.++++.+
T Consensus 30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ii~g 101 (194)
T COG3963 30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVNIING 101 (194)
T ss_pred cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCcccccc
Confidence 34455557778788888888999999999999999999986 4678999999999999998875 56678999
Q ss_pred CCCCCC-----CCCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEee
Q 020988 227 DVCRLP-----FASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 227 d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
|+.++. ..++.||.|+|.--+-.++-. .+.++++...+..||+...+.++
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 988764 567889999998877777533 24566666666677766666554
No 150
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=6.2e-08 Score=87.93 Aligned_cols=72 Identities=24% Similarity=0.417 Sum_probs=60.1
Q ss_pred eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
+|||+|||+|..+..++...+..+|+|+|+|+.+++.|+++....+ ..++.++++|... +.. ++||+|+++-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~---l~~~~~~~~dlf~-~~~-~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG---LVRVLVVQSDLFE-PLR-GKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC---CccEEEEeeeccc-ccC-CceeEEEeCC
Confidence 7999999999999999999988899999999999999999998863 2556667766544 222 4899999974
No 151
>PLN02366 spermidine synthase
Probab=98.75 E-value=1.1e-07 Score=87.34 Aligned_cols=107 Identities=11% Similarity=0.094 Sum_probs=78.3
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCCC-C-CCCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-P-FASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p-~~~~~fD~V 241 (319)
.++.+||+||||.|..++.+++.....+|+.+|+++.+++.+++.+...+. ...++++++.+|+... . .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999998874345899999999999999998754211 1246899999997542 1 225689999
Q ss_pred EecccccCCCC----HHHHHHHHHHhhcCCCeeE
Q 020988 242 HAGAALHCWPS----PSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 242 ~~~~vl~h~~d----~~~~l~el~rvlk~g~~~g 271 (319)
++...-.+.+. ...+++.+++.|+|+|...
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 98543322221 1356778888888887654
No 152
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.75 E-value=1e-07 Score=91.94 Aligned_cols=85 Identities=20% Similarity=0.343 Sum_probs=68.4
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--- 231 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--- 231 (319)
.+.+.+++...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|++++..++ ..+++++.+|+.+.
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHHH
Confidence 44555555556678999999999999999998765 89999999999999999987653 45899999998652
Q ss_pred -CCCCCCccEEEec
Q 020988 232 -PFASGFVDAVHAG 244 (319)
Q Consensus 232 -p~~~~~fD~V~~~ 244 (319)
++.+++||+|++.
T Consensus 356 ~~~~~~~~D~vi~d 369 (431)
T TIGR00479 356 QPWAGQIPDVLLLD 369 (431)
T ss_pred HHhcCCCCCEEEEC
Confidence 2335679999874
No 153
>PRK03612 spermidine synthase; Provisional
Probab=98.72 E-value=6.6e-08 Score=95.23 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=77.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH--HhhcC--ccCCCCeEEEEcCCCCC-CCCCCCcc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVD 239 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~--~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD 239 (319)
.++++|||||||+|..+..+.+.....+++++|+++++++.++++ +...+ ....++++++.+|..+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 456899999999999999998864336999999999999999983 32211 11246899999998763 32347899
Q ss_pred EEEecccccCCCCH-----HHHHHHHHHhhcCCCeeEE
Q 020988 240 AVHAGAALHCWPSP-----SNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 240 ~V~~~~vl~h~~d~-----~~~l~el~rvlk~g~~~g~ 272 (319)
+|++...-...+.. .+.++.+++.|+|+|....
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~ 413 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVV 413 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEE
Confidence 99997543322221 2467788888888776543
No 154
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.8e-08 Score=86.30 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=87.8
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
....++|||||-|...+.+...+ -.+++-+|.|..|++.++..-. ..-.+...++|-+.++|.++++|+|+++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-----p~i~~~~~v~DEE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-----PSIETSYFVGDEEFLDFKENSVDLIISSL 145 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-----CceEEEEEecchhcccccccchhhhhhhh
Confidence 45789999999999999999886 3589999999999999987521 12345677889999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+|++.|....+.+++..+||.+++---++
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCccchhHHh
Confidence 999999988888889999998887654455
No 155
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.69 E-value=2.4e-07 Score=78.23 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=70.0
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C--C-CCCCCcc
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L--P-FASGFVD 239 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l--p-~~~~~fD 239 (319)
..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|-.+ . . ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4578899999999999999999884456999999999 99999998877532234566666655433 1 1 2346899
Q ss_pred EEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 240 AVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
+|+...+++.-.....+++-+.+++++.+.
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence 999999999877777888889999999887
No 156
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.68 E-value=9.8e-08 Score=97.24 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=74.6
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCccEEEec
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~ 244 (319)
++.+|||+|||+|.++..+++.|. .+|+++|+|+.+++.|+++++.++.. ..+++++++|+.+. .-..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 578999999999999999998753 47999999999999999999876421 14789999998653 1114689999985
Q ss_pred c-c----------ccCCCCHHHHHHHHHHhhcCCCee
Q 020988 245 A-A----------LHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 245 ~-v----------l~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
- . +....+....++.+.++++++|..
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l 652 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTL 652 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEE
Confidence 3 1 111122334566666677776644
No 157
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.66 E-value=1.4e-07 Score=89.29 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=66.8
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA 234 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~ 234 (319)
+.+.+++...++.+|||++||+|.++..++..+. +|+|+|+++.+++.|+++.+..+ ..+++++.+|+.+.. ..
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~---~~~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLG---LDNLSFAALDSAKFATAQ 297 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHHhc
Confidence 4444555444678999999999999999997764 99999999999999999987753 348999999986642 11
Q ss_pred CCCccEEEeccc
Q 020988 235 SGFVDAVHAGAA 246 (319)
Q Consensus 235 ~~~fD~V~~~~v 246 (319)
..+||+|++.--
T Consensus 298 ~~~~D~vi~DPP 309 (374)
T TIGR02085 298 MSAPELVLVNPP 309 (374)
T ss_pred CCCCCEEEECCC
Confidence 246999988643
No 158
>PLN02476 O-methyltransferase
Probab=98.66 E-value=5.4e-07 Score=81.22 Aligned_cols=113 Identities=10% Similarity=0.018 Sum_probs=80.4
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp 232 (319)
.+.+..++...++.+|||||+++|+.+.++++.. +..+++.+|.+++..+.|++++++.| ...+++++.+|+.+ ++
T Consensus 107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~ 184 (278)
T PLN02476 107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAESLK 184 (278)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHH
Confidence 4445555556678899999999999999998753 34589999999999999999998875 34689999999865 22
Q ss_pred -C----CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 -F----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 -~----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+ .+++||+|+.-.-= .+....++.+.+++++| |++++
T Consensus 185 ~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~G---GvIV~ 226 (278)
T PLN02476 185 SMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVG---GVIVM 226 (278)
T ss_pred HHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCC---cEEEE
Confidence 1 13689999885321 12234455555555554 55555
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.64 E-value=3.5e-07 Score=88.14 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=69.2
Q ss_pred CCeEEEEcCCcChHHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
+..|||||||+|.++..+++.+ ...+|++||-++.+....+++++.++ ...+|+++.+|++++..+ +++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~lp-ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVELP-EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCCC-CceeEEE
Confidence 5789999999999987776664 34699999999998887777655543 457899999999998875 4999999
Q ss_pred ecc--cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGA--ALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~--vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+-. .+-.-.--.+.+....|.||| +|+++.
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~IP 295 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKP---DGIMIP 295 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEE---EEEEES
T ss_pred EeccCCccccccCHHHHHHHHhhcCC---CCEEeC
Confidence 832 222111222345555555555 466665
No 160
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.64 E-value=2e-07 Score=83.81 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=76.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccC---CCCeEEEEcCCCC------CCCCC
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---TSNLALVRADVCR------LPFAS 235 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~i~~~~~d~~~------lp~~~ 235 (319)
.++..++|+|||-|.-+...-+.+ ...++|+|+++..++.|+++........ .-.+.|+.+|... +++.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 567899999999998877777665 3589999999999999999887642110 1136788888743 45566
Q ss_pred CCccEEEecccccCCC-CHH---HHHHHHHHhhcCCCeeEEEEee
Q 020988 236 GFVDAVHAGAALHCWP-SPS---NAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~-d~~---~~l~el~rvlk~g~~~g~~~~~ 276 (319)
.+||+|.|.+++|+-- +-+ .+++.+.+.|+||| +++-+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG---~FIgT 236 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG---VFIGT 236 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc---EEEEe
Confidence 6699999999999753 333 34445555555554 55443
No 161
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.63 E-value=2.2e-07 Score=88.30 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=61.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--C--CCCCccE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASGFVDA 240 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~~~fD~ 240 (319)
.++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|++++..++.. ..+++++.+|+.+.- + ..++||+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~-~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 357899999999999988766543 458999999999999999999875311 137899999987641 1 2468999
Q ss_pred EEecc
Q 020988 241 VHAGA 245 (319)
Q Consensus 241 V~~~~ 245 (319)
|++.-
T Consensus 297 VilDP 301 (396)
T PRK15128 297 IVMDP 301 (396)
T ss_pred EEECC
Confidence 99864
No 162
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.63 E-value=1.4e-07 Score=86.02 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=65.9
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..+++.|||||||+|.++...++.| ..+|+++|.|.- ++.|++.+..++ ....++++.+.++++.++.+++|+|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~i-a~~a~~iv~~N~--~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSI-ADFARKIVKDNG--LEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHH-HHHHHHHHHhcC--ccceEEEeecceEEEecCccceeEEee
Confidence 3468999999999999999999998 489999998774 588998887764 345689999999887666789999998
Q ss_pred ccc
Q 020988 244 GAA 246 (319)
Q Consensus 244 ~~v 246 (319)
-+.
T Consensus 134 EWM 136 (346)
T KOG1499|consen 134 EWM 136 (346)
T ss_pred hhh
Confidence 553
No 163
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.62 E-value=2e-07 Score=91.48 Aligned_cols=104 Identities=8% Similarity=0.043 Sum_probs=81.3
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 242 (319)
..+..+||||||.|.++..+++..|...++|+|++...+..+.++.... ...|+.++..|+..+ -++++++|.|+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~---~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ---NITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 4567899999999999999999999999999999999999988887665 356888888887543 26678999999
Q ss_pred ecccccCCCCH--------HHHHHHHHHhhcCCCeeE
Q 020988 243 AGAALHCWPSP--------SNAASVFSSSYSLLSICY 271 (319)
Q Consensus 243 ~~~vl~h~~d~--------~~~l~el~rvlk~g~~~g 271 (319)
+++.=-|.... ...++.+.++|++||...
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 86432222111 366888999999887554
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.62 E-value=2.9e-07 Score=79.69 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=79.8
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C-
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P- 232 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p- 232 (319)
+.+..+.......+|||||+++|+-+.++++..+ ..+++.+|+++...+.|++.++..+ ...+++++.+|+.+. +
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~ 112 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPE 112 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHH
Confidence 4444444556678999999999999999998754 5799999999999999999998764 346899999998652 2
Q ss_pred ----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 ----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
-..++||+|+.-.. .......+..+++.++++|+++.
T Consensus 113 l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 113 LANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEE
Confidence 11358999998542 23333334444445566677776
No 165
>PLN02672 methionine S-methyltransferase
Probab=98.62 E-value=2.1e-07 Score=97.28 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=63.2
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-------------cCCCCeEEEEcCCCCCCC
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------------ILTSNLALVRADVCRLPF 233 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------------~~~~~i~~~~~d~~~lp~ 233 (319)
+.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.|++++..++. ....+++++.+|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999987777999999999999999999876421 112479999999876431
Q ss_pred C-CCCccEEEecc
Q 020988 234 A-SGFVDAVHAGA 245 (319)
Q Consensus 234 ~-~~~fD~V~~~~ 245 (319)
. ..+||+|+++-
T Consensus 199 ~~~~~fDlIVSNP 211 (1082)
T PLN02672 199 DNNIELDRIVGCI 211 (1082)
T ss_pred ccCCceEEEEECC
Confidence 1 23699999964
No 166
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.61 E-value=3.8e-07 Score=79.13 Aligned_cols=111 Identities=8% Similarity=0.027 Sum_probs=82.1
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE-cCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRL 231 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~-~d~~~l 231 (319)
.-..+..++....+++|||||.+.|+-+.+++...+ +.+++.+|+++++.+.|++++++.+ ...++.++. +|..+.
T Consensus 47 ~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~ 124 (219)
T COG4122 47 TGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHHHH
Confidence 345555555667889999999999999999998877 7899999999999999999999875 345578888 466442
Q ss_pred -C-CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 232 -P-FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 232 -p-~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
. ...++||+|++-..=. +....++.+.++++|||.
T Consensus 125 l~~~~~~~fDliFIDadK~---~yp~~le~~~~lLr~GGl 161 (219)
T COG4122 125 LSRLLDGSFDLVFIDADKA---DYPEYLERALPLLRPGGL 161 (219)
T ss_pred HHhccCCCccEEEEeCChh---hCHHHHHHHHHHhCCCcE
Confidence 2 3468999998743211 223456666666666653
No 167
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.1e-07 Score=75.89 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=67.8
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (319)
...-.|++++|+|||.|-++....-.+ +..|+|+|+++++++.++++.... .-+++++++|+.++.+..+.||.+
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~g~fDta 118 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKGGIFDTA 118 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccCCeEeeE
Confidence 344578999999999999986555443 468999999999999999998774 457799999999988888999999
Q ss_pred Eeccccc
Q 020988 242 HAGAALH 248 (319)
Q Consensus 242 ~~~~vl~ 248 (319)
+.+.-+.
T Consensus 119 viNppFG 125 (185)
T KOG3420|consen 119 VINPPFG 125 (185)
T ss_pred EecCCCC
Confidence 9876443
No 168
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.60 E-value=5.4e-07 Score=81.76 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=83.0
Q ss_pred CCCCcHHHHHHHHHHhhcc-CCCeEEEEcCCcCh----HHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHH-------
Q 020988 147 GFPGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGL----FSRKFAKSG----TYSGVVALDFSENMLRQCYDFI------- 210 (319)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~----~~~~l~~~g----~~~~v~gvD~s~~~l~~a~~~~------- 210 (319)
.|+.....++.+.+.+... ..-+|+..||+||. ++..+.+.. ...+|+|+|+|+.+++.|++-.
T Consensus 95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r 174 (287)
T PRK10611 95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELK 174 (287)
T ss_pred CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 4555555556665544322 23699999999995 333333432 1358999999999999998631
Q ss_pred -----------hhc-----C-----ccCCCCeEEEEcCCCCCCCC-CCCccEEEecccccCCCC--HHHHHHHHHHhhcC
Q 020988 211 -----------KQD-----N-----TILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPS--PSNAASVFSSSYSL 266 (319)
Q Consensus 211 -----------~~~-----~-----~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~ 266 (319)
... + ......|.|.+.|+.+.+++ .+.||+|+|.+++.|+.. ..++++.+.+.|+|
T Consensus 175 ~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p 254 (287)
T PRK10611 175 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP 254 (287)
T ss_pred cCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC
Confidence 000 0 00124678888998875543 578999999999999954 45778888888888
Q ss_pred CCe
Q 020988 267 LSI 269 (319)
Q Consensus 267 g~~ 269 (319)
||.
T Consensus 255 gG~ 257 (287)
T PRK10611 255 DGL 257 (287)
T ss_pred CcE
Confidence 874
No 169
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.57 E-value=5.7e-07 Score=76.30 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=77.5
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCe---------EEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~---------v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~ 225 (319)
...|..+....++..|||--||+|.++.+.+..+.+.. ++|.|+++.+++.|+++++..+ ....+.+.+
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~~~~ 94 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceEEEe
Confidence 34555556667788999999999999998887766555 8899999999999999998764 345689999
Q ss_pred cCCCCCCCCCCCccEEEecccccCC-CCH-------HHHHHHHHHhhcC
Q 020988 226 ADVCRLPFASGFVDAVHAGAALHCW-PSP-------SNAASVFSSSYSL 266 (319)
Q Consensus 226 ~d~~~lp~~~~~fD~V~~~~vl~h~-~d~-------~~~l~el~rvlk~ 266 (319)
.|+.++++.++++|+|+++--...- .+. ..+++++.+++++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999778899999996533321 111 1335666667776
No 170
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.57 E-value=9.5e-07 Score=75.58 Aligned_cols=121 Identities=14% Similarity=0.176 Sum_probs=82.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-CCCCeEEEEcCCCCC-
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRL- 231 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~i~~~~~d~~~l- 231 (319)
+.+.+.+++... +.+|||||+|||.....+++..|...-.-.|+++..+...+..+.+.+.. .... +..|+..-
T Consensus 14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P---~~lDv~~~~ 89 (204)
T PF06080_consen 14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP---LALDVSAPP 89 (204)
T ss_pred HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC---eEeecCCCC
Confidence 456777776543 23699999999999999999999888889999998876666665553211 1122 23355443
Q ss_pred -CC------CCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988 232 -PF------ASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFRYTKI 280 (319)
Q Consensus 232 -p~------~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~~~~~ 280 (319)
+. ..++||+|++.+++|-.+-. +.+++...++|+++|.+. ++.++..
T Consensus 90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~--~YGPF~~ 145 (204)
T PF06080_consen 90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLF--LYGPFNR 145 (204)
T ss_pred CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEE--EeCCccc
Confidence 22 24699999999999976532 466778888888876533 4444433
No 171
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.56 E-value=7.3e-07 Score=81.80 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=89.5
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLP 232 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp 232 (319)
..+.+.++....+|..|||-=||||.++..+.-.|. +++|.|++..|++-|+.+++..+ .....+... |+..+|
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~~lp 259 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccccCC
Confidence 456667777778899999999999999999988877 99999999999999999998752 345555555 999999
Q ss_pred CCCCCccEEEeccccc-----CCCC----HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 FASGFVDAVHAGAALH-----CWPS----PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~-----h~~d----~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++.+||.|.+---.- .... ..++++.+.++|+++|.......
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9988999999732111 1111 24668888889988665444333
No 172
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.54 E-value=9.3e-07 Score=81.42 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEE-cCCCCCC----CCCCCcc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD 239 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~-~d~~~lp----~~~~~fD 239 (319)
++.++||||||+|.....++...+..+++|+|+++.+++.|+++++.+ + ...++.+.. .|...+. ..++.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceE
Confidence 468999999999988777776655669999999999999999999874 2 335677754 3332221 2357899
Q ss_pred EEEecccccC
Q 020988 240 AVHAGAALHC 249 (319)
Q Consensus 240 ~V~~~~vl~h 249 (319)
+|+|+--++-
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999865553
No 173
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=6.3e-07 Score=77.65 Aligned_cols=47 Identities=17% Similarity=0.324 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
.+..+|||||.+|.++..+++......+.|+||++..++.|++.++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 56789999999999999999997677899999999999999998754
No 174
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.54 E-value=1.5e-06 Score=74.58 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCcCh----HHHHHHhh-----CCCCeEEEEeCCHHHHHHHHHHH-------------------hhcCc--
Q 020988 166 QGGLLVDVSCGSGL----FSRKFAKS-----GTYSGVVALDFSENMLRQCYDFI-------------------KQDNT-- 215 (319)
Q Consensus 166 ~~~~VLDiGcG~G~----~~~~l~~~-----g~~~~v~gvD~s~~~l~~a~~~~-------------------~~~~~-- 215 (319)
+.-+|+.+||++|. ++..+.+. ....+++|+|+|+.+++.|++-. ...+.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999995 33333341 22468999999999999998411 00000
Q ss_pred ----cCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988 216 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY 277 (319)
Q Consensus 216 ----~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~ 277 (319)
....++.|.+.|+.+.+...+.||+|+|.+||-++ +++...+-+.++...+.++|.++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 01147899999998844456899999999999999 55544566666777777778887743
No 175
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.48 E-value=7.1e-07 Score=76.80 Aligned_cols=106 Identities=11% Similarity=0.109 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
...+.||.|+|-|+.+..+.-.. ..+|-.+|+.+..++.|++.+... ...-..+++..+++......+||+|++..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 45789999999999998775543 459999999999999999877542 12345677777777654567999999999
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++.|+.| +.+++-+.|+.+.+.++|+++++
T Consensus 131 ~lghLTD-~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 131 CLGHLTD-EDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp -GGGS-H-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhccCCH-HHHHHHHHHHHHhCcCCcEEEEE
Confidence 9999976 45566677766666777888873
No 176
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.48 E-value=4.4e-06 Score=74.64 Aligned_cols=110 Identities=9% Similarity=0.099 Sum_probs=85.8
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHhhcCccCCCCe-EEEEcCCCCCC---CCCCC
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLP---FASGF 237 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i-~~~~~d~~~lp---~~~~~ 237 (319)
...+-+||||.||.|+....+....+. .+|...|.|+..++..++.+++.+ ..++ +|.++|+.+.. --+..
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCC
Confidence 346779999999999999888888764 689999999999999999998874 4454 99999987632 22446
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 238 VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
.++++.++.+|.++|-+.+-+.+..+.....++|.++++
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 799999999999998665444455555556666677774
No 177
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.48 E-value=4.3e-06 Score=71.57 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=75.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C-C-CC-CCccE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-AS-GFVDA 240 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-~~-~~fD~ 240 (319)
..+.+|||++||+|.++..++.+|. ..|+++|.++.+++.++++++..+ ...+++++.+|+... . + .. ..||+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHHHHHHHhhccCCCceE
Confidence 3578999999999999999999875 589999999999999999987753 224688999998442 2 1 12 24788
Q ss_pred EEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
|+.---+.. ......++.+.+ ...+..+++++.+..
T Consensus 125 v~~DPPy~~-~~~~~~l~~l~~-~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 125 IYLDPPFFN-GALQALLELCEN-NWILEDTVLIVVEED 160 (189)
T ss_pred EEECcCCCC-CcHHHHHHHHHH-CCCCCCCeEEEEEec
Confidence 877543332 223444444433 234566677777544
No 178
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.48 E-value=1.3e-06 Score=82.69 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=75.0
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (319)
+.+|||++||+|.++..++.......|+++|+++.+++.++++++.++ ..++.+..+|+..+-...+.||+|++.-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---~~~~~v~~~Da~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---LENEKVFNKDANALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCceEEEhhhHHHHHhhcCCCCEEEECC-
Confidence 468999999999999999876544589999999999999999987753 3456788899866422146799998853
Q ss_pred ccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 247 LHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 247 l~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
. ..+..++....+.+++++..++-
T Consensus 134 ~---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 F---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 2 34566677756666776655544
No 179
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.2e-06 Score=77.83 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=70.7
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.....++..|||||+|.|.++..+++.+. +|+++|+++.+++..+++... ..+++++.+|+...+++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcCcch
Confidence 35566666667789999999999999999999987 899999999999999998753 46999999999998876
Q ss_pred CC-CccEEEecc
Q 020988 235 SG-FVDAVHAGA 245 (319)
Q Consensus 235 ~~-~fD~V~~~~ 245 (319)
+- .++.|+++-
T Consensus 92 ~l~~~~~vVaNl 103 (259)
T COG0030 92 SLAQPYKVVANL 103 (259)
T ss_pred hhcCCCEEEEcC
Confidence 43 577887753
No 180
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.46 E-value=7.8e-07 Score=83.17 Aligned_cols=106 Identities=22% Similarity=0.209 Sum_probs=87.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++..++|+|||.|.....+.... ...++|+|.++..+..+........ ......++.+|+...|+.+..||.|.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~--l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAY--LDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHH--hhhhcceehhhhhcCCCCccccCcEEEE
Confidence 466789999999999998887764 4689999999988888776554432 2234455888999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
.+.+|.+++..+++|+.|+++|||.....
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 99999999999999999999998865544
No 181
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.44 E-value=2.4e-06 Score=75.95 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=83.2
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL- 231 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l- 231 (319)
..+.+..++......+|||||+++|+-+.+++... +..+++.+|.+++..+.|++.++..+ ...+++++.+|+.+.
T Consensus 67 ~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 67 EGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHHHH
Confidence 34555555556677899999999999999888763 45699999999999999999998864 357899999998652
Q ss_pred C-C-----CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 P-F-----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+ + ..++||+|+.-. +.......+..+++.+.++|++++
T Consensus 145 ~~l~~~~~~~~~fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHhccccCCcccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 2 1 136899998853 234444444444555566666666
No 182
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.5e-06 Score=72.49 Aligned_cols=111 Identities=22% Similarity=0.248 Sum_probs=80.0
Q ss_pred HHHHHHhh--ccCCCeEEEEcCCcChHHHHHHhh--CCCCeEEEEeCCHHHHHHHHHHHhhcCc-------cCCCCeEEE
Q 020988 156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALV 224 (319)
Q Consensus 156 ~~l~~~l~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~~~v~gvD~s~~~l~~a~~~~~~~~~-------~~~~~i~~~ 224 (319)
..+.++|. ..|+.+.||+|.|+|+++..++.. .+...++|||.-++.++.+++++.+.-. ....++.++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 34445554 678999999999999999888755 2333559999999999999999876420 113568889
Q ss_pred EcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
++|.........+||.|++...-.- ..+++...|+++|..-+
T Consensus 150 vGDgr~g~~e~a~YDaIhvGAaa~~------~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGAAASE------LPQELLDQLKPGGRLLI 191 (237)
T ss_pred eCCccccCCccCCcceEEEccCccc------cHHHHHHhhccCCeEEE
Confidence 9999887767889999999854332 24445566666654433
No 183
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.43 E-value=8e-07 Score=80.89 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=73.5
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (319)
+.+.+.+...+++.+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++.. ..++.++.+|+.++.
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHHH
Confidence 4555666667889999999999999999999864 57999999999999999988743 258999999998753
Q ss_pred CCC--CCccEEEecc--cccCCCCHHH
Q 020988 233 FAS--GFVDAVHAGA--ALHCWPSPSN 255 (319)
Q Consensus 233 ~~~--~~fD~V~~~~--vl~h~~d~~~ 255 (319)
..+ .++|.|++.. .-+++.++++
T Consensus 84 l~~~~~~vDgIl~DLGvSs~Qld~~~R 110 (296)
T PRK00050 84 LAEGLGKVDGILLDLGVSSPQLDDAER 110 (296)
T ss_pred HHcCCCccCEEEECCCccccccCCCcC
Confidence 112 2799999865 3334545443
No 184
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.42 E-value=2.8e-07 Score=87.82 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhc----cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEE---eCCHHHHHHHHHHHhhcCccCCCCeEEE
Q 020988 152 DEEFKMAQEYFKS----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLALV 224 (319)
Q Consensus 152 ~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~i~~~ 224 (319)
+...+.+.+.+.. ..-..+||||||+|.|+..+.+++- .+..+ |..+..++.|.++ ++..+
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvpa~ 166 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVPAM 166 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------Ccchh
Confidence 3445566666654 2223689999999999999998742 33222 4445566677655 23333
Q ss_pred EcC--CCCCCCCCCCccEEEecccccCCC-CHHHHHHHHHHhhcCCCe
Q 020988 225 RAD--VCRLPFASGFVDAVHAGAALHCWP-SPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 225 ~~d--~~~lp~~~~~fD~V~~~~vl~h~~-d~~~~l~el~rvlk~g~~ 269 (319)
.+- ..+|||++++||+|+|..++-.+. +....+-|+.|+|+|||.
T Consensus 167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy 214 (506)
T PF03141_consen 167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY 214 (506)
T ss_pred hhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCce
Confidence 333 467999999999999988666553 334678889999988875
No 185
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.40 E-value=3e-07 Score=81.57 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=79.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCe-EEEEcCCCCCCCCCCCccEEEe
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i-~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..+..++|+|||+|..+.. .|...++|.|.+...+..+++. +. ....+|+..+|+++.+||.+++
T Consensus 44 ~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~----------~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS----------GGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC----------CCceeehhhhhcCCCCCCccccchh
Confidence 3478899999999976432 2666899999999998888763 33 5788999999999999999999
Q ss_pred cccccCCCCH---HHHHHHHHHhhcCCCeeEEEEe
Q 020988 244 GAALHCWPSP---SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 244 ~~vl~h~~d~---~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..++||+... ..+++|+.|+++|||..-+...
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999764 4678889999999988666655
No 186
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.40 E-value=2.3e-06 Score=75.49 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=67.1
Q ss_pred HHHHHHHhhcc---CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC--
Q 020988 155 FKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-- 229 (319)
Q Consensus 155 ~~~l~~~l~~~---~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~-- 229 (319)
.+.+.+.+... .+..|||+|||+|..+..++...++..|+++|.|+.++..|.++..... ...++.++..+++
T Consensus 134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccc
Confidence 45555555332 4457999999999999999999889999999999999999999887643 3456666644332
Q ss_pred ---CCCCCCCCccEEEecc
Q 020988 230 ---RLPFASGFVDAVHAGA 245 (319)
Q Consensus 230 ---~lp~~~~~fD~V~~~~ 245 (319)
..+..++++|+++++-
T Consensus 212 ~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred cccccccccCceeEEecCC
Confidence 2345678999999975
No 187
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.35 E-value=3.2e-06 Score=74.51 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=70.3
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+....+++..|||||.|||.++..+.+.+. +|+++|+++.|+....++.+. ......+.++.+|+...+++
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~g--tp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQG--TPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcC--CCccceeeEEecccccCCCc-
Confidence 4445555677899999999999999999999988 999999999999999998754 23347899999999888754
Q ss_pred CCccEEEecc
Q 020988 236 GFVDAVHAGA 245 (319)
Q Consensus 236 ~~fD~V~~~~ 245 (319)
.||.++++-
T Consensus 123 -~fd~cVsNl 131 (315)
T KOG0820|consen 123 -RFDGCVSNL 131 (315)
T ss_pred -ccceeeccC
Confidence 699998853
No 188
>PLN02823 spermine synthase
Probab=98.33 E-value=5.4e-06 Score=77.05 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCC-CCCCCCccEEEe
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA 243 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 243 (319)
.+.+||.||+|.|..++.+.+..+..+++.+|+++.+++.|++.+...+ ....++++++.+|.... ...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4679999999999999999887555689999999999999999875321 11247899999998663 334578999998
Q ss_pred ccc-------ccCCCCHHHHHH-HHHHhhcCCCeeE
Q 020988 244 GAA-------LHCWPSPSNAAS-VFSSSYSLLSICY 271 (319)
Q Consensus 244 ~~v-------l~h~~d~~~~l~-el~rvlk~g~~~g 271 (319)
-.. ..++.. ..+++ .+.+.|+++|..-
T Consensus 183 D~~dp~~~~~~~~Lyt-~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 183 DLADPVEGGPCYQLYT-KSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred cCCCccccCcchhhcc-HHHHHHHHHHhcCCCcEEE
Confidence 521 112212 24555 6777888777543
No 189
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.31 E-value=4.1e-06 Score=72.10 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=68.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++..|||.-||-|.|+..+++.+....|+++|++|.+++..+++++.++ ...++..+.+|..++.. .+.||-|++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 56899999999999999999996656689999999999999999998764 34668899999988765 7899999885
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCC
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
.. +.-..++..+.++++.+|
T Consensus 177 lp----~~~~~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 177 LP----ESSLEFLDAALSLLKEGG 196 (200)
T ss_dssp -T----SSGGGGHHHHHHHEEEEE
T ss_pred Ch----HHHHHHHHHHHHHhcCCc
Confidence 42 122345677777777664
No 190
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.31 E-value=8.5e-06 Score=71.62 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=56.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeE-EEEcCCCCC-----CCCCCCc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRL-----PFASGFV 238 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~-~~~~d~~~l-----p~~~~~f 238 (319)
.++.+|||+|||+|.++..+++.| ..+|+|+|++++|+....+. ..++. +...|+..+ +..-..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~~~~~~d~~~~ 144 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTPADIFPDFATF 144 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCHhHcCCCceee
Confidence 467799999999999999999986 35899999999888762221 12222 233344332 2122367
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcC
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSL 266 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~ 266 (319)
|+++++..+ .+..+.+++++
T Consensus 145 DvsfiS~~~--------~l~~i~~~l~~ 164 (228)
T TIGR00478 145 DVSFISLIS--------ILPELDLLLNP 164 (228)
T ss_pred eEEEeehHh--------HHHHHHHHhCc
Confidence 877775443 25667788887
No 191
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.28 E-value=2.1e-06 Score=80.63 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=56.0
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
.+.+.+++... +.+|||++||+|.++..+++... +|+|+|+++.+++.|++++..++ ..++.++.+|+.+
T Consensus 187 ~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~ 256 (353)
T TIGR02143 187 LEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHH
Confidence 44444554322 35799999999999998888764 99999999999999999987753 3479999999866
No 192
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.27 E-value=1.1e-06 Score=75.80 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=84.4
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCcc
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVD 239 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD 239 (319)
.....+.+|||...|-|+++....++|. ..|+-++-+++.++.|.-+-=..+. ...+++++.+|+.++ .|.|++||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCccccc
Confidence 3456799999999999999999999974 6899999999999888754211111 123689999998775 47899999
Q ss_pred EEEecc-ccc---CCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 240 AVHAGA-ALH---CWPSPSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 240 ~V~~~~-vl~---h~~d~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
+|+--- -+. ++ -.+++.+|++|+||+||.....+-.+.
T Consensus 208 aIiHDPPRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 208 AIIHDPPRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred eEeeCCCccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 997521 111 12 135678999999999998877766443
No 193
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.27 E-value=2.1e-06 Score=80.97 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=56.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
++.+.+++... +.+|||++||+|.++..+++... +|+|+|.++.+++.+++++..++ ..++.++.+|+.+
T Consensus 196 ~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~ 265 (362)
T PRK05031 196 LEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHH
Confidence 44555554332 35799999999999998888755 99999999999999999987753 3489999999866
No 194
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.26 E-value=8.7e-06 Score=73.69 Aligned_cols=104 Identities=8% Similarity=0.041 Sum_probs=80.8
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccC-CCCeEEEEcCCCCC-CCCCCCccEEEecc
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRL-PFASGFVDAVHAGA 245 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~i~~~~~d~~~l-p~~~~~fD~V~~~~ 245 (319)
.+||-||.|.|.+++.+.+..+-.+++.+|+++.+++.+++.+....... .++++++..|..+. .-..++||+|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999999877899999999999999999987653222 48899999998663 22234899999853
Q ss_pred cccCCCCH------HHHHHHHHHhhcCCCeeEEE
Q 020988 246 ALHCWPSP------SNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 246 vl~h~~d~------~~~l~el~rvlk~g~~~g~~ 273 (319)
.=. . .| ..+.+.+++.|+++|..-..
T Consensus 158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 322 1 22 57788899998888765544
No 195
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.26 E-value=2.3e-05 Score=70.65 Aligned_cols=118 Identities=12% Similarity=0.191 Sum_probs=86.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++..|||||+|+|.++..+.+.+. +++++|+++.+++..++++.. ..++.++.+|+..+...
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTSCGG
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhccccH
Confidence 45666677767899999999999999999999985 999999999999999998753 47999999999988755
Q ss_pred C---CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccchhc
Q 020988 235 S---GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKIIE 282 (319)
Q Consensus 235 ~---~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~~~~ 282 (319)
+ ..-..|+++--. ++ ....+..+....+.|.....+++.......
T Consensus 92 ~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~g~~~~~l~vq~e~a~r 139 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRFGRVRMVLMVQKEVAER 139 (262)
T ss_dssp GHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGGCEEEEEEEEEHHHHHH
T ss_pred HhhcCCceEEEEEecc-cc--hHHHHHHHhhcccccccceEEEEehhhhhh
Confidence 3 344555554322 22 345666666666666666666665444443
No 196
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=4e-05 Score=63.85 Aligned_cols=113 Identities=18% Similarity=0.234 Sum_probs=78.4
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
......+||||||+|..+..+++. +++..+.++|+++.+++..++.++.+ ..++..++.|+..- +.+++.|+++
T Consensus 41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~-l~~~~VDvLv 115 (209)
T KOG3191|consen 41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSG-LRNESVDVLV 115 (209)
T ss_pred hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhh-hccCCccEEE
Confidence 344678999999999988888776 67788999999999999988877653 35677888887552 3348999998
Q ss_pred ecccccCCCC---------------------HHHHHHHHHHhhcCCCeeEEEEeeccchh
Q 020988 243 AGAALHCWPS---------------------PSNAASVFSSSYSLLSICYLLQFRYTKII 281 (319)
Q Consensus 243 ~~~vl~h~~d---------------------~~~~l~el~rvlk~g~~~g~~~~~~~~~~ 281 (319)
.+--..--++ .++++.++-.+|.|-|.++++........
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK 175 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence 8643221111 12334444556677777777766444443
No 197
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.17 E-value=1.2e-05 Score=74.08 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=83.8
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-------CCCCeEEEEeCCHHHHHHHHHHHhhcCccCC
Q 020988 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILT 218 (319)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 218 (319)
..++.|....+.+..++...++.+|+|-+||+|.|+..+.+. ....+++|+|+++.++..|+-++.-.+. ..
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~-~~ 104 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI-DN 104 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-HC
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-cc
Confidence 357889999999999998888889999999999999888763 2456899999999999998876543211 12
Q ss_pred CCeEEEEcCCCCCCCC--CCCccEEEecccccCC--C------C------------H-HHHHHHHHHhhcCCCeeEEEEe
Q 020988 219 SNLALVRADVCRLPFA--SGFVDAVHAGAALHCW--P------S------------P-SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 219 ~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl~h~--~------d------------~-~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+..+..+|....+.. .+.||+|+++--+.-. . + . ..++..+.+.|+++|..++++.
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 2345788887655432 4789999996422211 0 0 1 1356667777888777777776
No 198
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.17 E-value=3.2e-05 Score=61.73 Aligned_cols=101 Identities=23% Similarity=0.268 Sum_probs=69.2
Q ss_pred EEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC--CCCCC-CCccEEEecc
Q 020988 170 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS-GFVDAVHAGA 245 (319)
Q Consensus 170 VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~-~~fD~V~~~~ 245 (319)
++|+|||+|... .+...... ..++|+|+++.++..++...... ....+.+..+|... +++.+ ..||++ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA---GLGLVDFVVADALGGVLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc---CCCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence 999999999965 33333221 37899999999998855543211 01116788888776 77776 489999 555
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
...|..++...+.++.++++++|.......
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 444443478889999999999665555444
No 199
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.16 E-value=1.2e-05 Score=68.51 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988 151 PDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (319)
Q Consensus 151 ~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (319)
.+...+.+...+.. .++.++||+-||+|.++.+++.+|. .+|+.+|.++..++..+++++..+ ...++.++..|+
T Consensus 25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~ 101 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDA 101 (183)
T ss_dssp SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSH
T ss_pred cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCH
Confidence 33344555555554 4789999999999999999999984 699999999999999999998753 223588888886
Q ss_pred CC-CC---CCCCCccEEEecccccCCCC-HHHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988 229 CR-LP---FASGFVDAVHAGAALHCWPS-PSNAASVFSSSYSLLSICYLLQFRYTKI 280 (319)
Q Consensus 229 ~~-lp---~~~~~fD~V~~~~vl~h~~d-~~~~l~el~rvlk~g~~~g~~~~~~~~~ 280 (319)
.. ++ ....+||+|++---...- . ....++.+.+ ...+...++++.+...-
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~~-~~~~~~l~~l~~-~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAKG-LYYEELLELLAE-NNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTSC-HHHHHHHHHHHH-TTSEEEEEEEEEEEETT
T ss_pred HHHHHhhcccCCCceEEEECCCcccc-hHHHHHHHHHHH-CCCCCCCEEEEEEecCC
Confidence 43 21 246899999986433322 2 1344444432 24567788888865443
No 200
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.15 E-value=5.5e-05 Score=67.94 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=71.8
Q ss_pred CCeEEEEcCCcCh----HHHHHHhhC-----CCCeEEEEeCCHHHHHHHHHHH-----h--h-----------cCc----
Q 020988 167 GGLLVDVSCGSGL----FSRKFAKSG-----TYSGVVALDFSENMLRQCYDFI-----K--Q-----------DNT---- 215 (319)
Q Consensus 167 ~~~VLDiGcG~G~----~~~~l~~~g-----~~~~v~gvD~s~~~l~~a~~~~-----~--~-----------~~~---- 215 (319)
.-+|+-+||+||. ++..+.+.+ +..+|+|+|+|..+++.|++-. . . .+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999995 444444444 2578999999999999998411 0 0 000
Q ss_pred ----cCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHH--HHHHHHHHhhcCCCee
Q 020988 216 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSIC 270 (319)
Q Consensus 216 ----~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~ 270 (319)
.....|.|.+.|+..-++..+.||+|+|-+||-++..+. ++++.++..|++||.+
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~L 237 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLL 237 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEE
Confidence 011357777888877653457899999999999995443 5566667777776643
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.12 E-value=2.8e-05 Score=66.08 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=68.7
Q ss_pred eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc
Q 020988 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~ 248 (319)
+++|||+|.|.-+..++-..|..+++.+|....-+...+.-.... ...|++++.+.+++ +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL---GLSNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH---T-SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh---CCCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 899999999999988888888889999999998877777766655 35689999999988 445689999999754
Q ss_pred CCCCHHHHHHHHHHhhcCCC
Q 020988 249 CWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 249 h~~d~~~~l~el~rvlk~g~ 268 (319)
......++....+++++|
T Consensus 125 --~~l~~l~~~~~~~l~~~G 142 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGG 142 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCC
Confidence 345555555555655443
No 202
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.11 E-value=1.9e-05 Score=64.22 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=61.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHh-----hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCcc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~-----~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 239 (319)
.+...|+|+|||.|+++..++. . ++.+|+|+|.++..++.+.++.+..+.....++.+..++....+. ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 6778999999999999999988 4 667999999999999999988876532233566666666554332 45667
Q ss_pred EEEeccccc
Q 020988 240 AVHAGAALH 248 (319)
Q Consensus 240 ~V~~~~vl~ 248 (319)
+++..|+=-
T Consensus 102 ~~vgLHaCG 110 (141)
T PF13679_consen 102 ILVGLHACG 110 (141)
T ss_pred EEEEeeccc
Confidence 777654433
No 203
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1.3e-05 Score=76.88 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=72.6
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
.+..+.+++...++.+|||+=||.|.|+..+++... +|+|+|+++++++.|+++++.++ ..|+.|+.+++++...
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHHhh
Confidence 466677777777889999999999999999998766 99999999999999999998874 5679999999988653
Q ss_pred C---CCCccEEEe
Q 020988 234 A---SGFVDAVHA 243 (319)
Q Consensus 234 ~---~~~fD~V~~ 243 (319)
. ...+|+|+.
T Consensus 356 ~~~~~~~~d~Vvv 368 (432)
T COG2265 356 AWWEGYKPDVVVV 368 (432)
T ss_pred hccccCCCCEEEE
Confidence 3 357899987
No 204
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.09 E-value=4.8e-06 Score=69.04 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=54.1
Q ss_pred eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCC-ccEEEec
Q 020988 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG 244 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~-fD~V~~~ 244 (319)
.|+|+.||.|..+.++++.+. +|+++|+++..++.|+.+.+-.| ...+++++.+|+.++. +.... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999876 99999999999999999988753 3568999999997752 22222 8999974
No 205
>PRK11827 hypothetical protein; Provisional
Probab=98.09 E-value=1.5e-06 Score=59.01 Aligned_cols=45 Identities=16% Similarity=0.383 Sum_probs=37.1
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccC
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG 111 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~ 111 (319)
.++++||+|+++|..... ...+.|..|+..|++++|++.++.++.
T Consensus 6 LeILaCP~ckg~L~~~~~---------~~~Lic~~~~laYPI~dgIPVlL~deA 50 (60)
T PRK11827 6 LEIIACPVCNGKLWYNQE---------KQELICKLDNLAFPLRDGIPVLLETEA 50 (60)
T ss_pred HhheECCCCCCcCeEcCC---------CCeEECCccCeeccccCCccccCHHHh
Confidence 468999999999976542 256899999999999999999986543
No 206
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.08 E-value=1.6e-05 Score=74.73 Aligned_cols=71 Identities=24% Similarity=0.440 Sum_probs=54.3
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
.++.+.+++...++ .|||+-||.|.++..+++... +|+|+|.++.+++.|+++++.+ ...|++|+.+++++
T Consensus 185 l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N---~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 185 LYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLN---GIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE--SHH
T ss_pred HHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHc---CCCcceEEEeeccc
Confidence 35666677765555 899999999999999999876 9999999999999999999886 35789999887654
No 207
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.08 E-value=0.00014 Score=67.10 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=68.5
Q ss_pred cCCCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEE--EEcCCCC----CCC-
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCR----LPF- 233 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~--~~~d~~~----lp~- 233 (319)
.++..|+|+|||+|.-+..+.+. +....++++|+|.++++.+.+++... ..+.+.+ +++|+.+ ++-
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~---~~p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG---NFSHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc---cCCCeEEEEEEecHHHHHhhcccc
Confidence 35668999999999876655544 33457999999999999999998722 2455655 7888755 221
Q ss_pred -CCCCccEEEec-ccccCCCCHH--HHHHHHHH-hhcCCCeeEEEEe
Q 020988 234 -ASGFVDAVHAG-AALHCWPSPS--NAASVFSS-SYSLLSICYLLQF 275 (319)
Q Consensus 234 -~~~~fD~V~~~-~vl~h~~d~~--~~l~el~r-vlk~g~~~g~~~~ 275 (319)
......+|+.. .+|.+++..+ .+++++++ .++++ +.+++
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~---d~lLi 195 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS---DSFLI 195 (319)
T ss_pred cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC---CEEEE
Confidence 12335666654 4888884433 34455555 55554 44544
No 208
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.07 E-value=1.9e-05 Score=67.87 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=66.3
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---CCCccEEEec
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHAG 244 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~ 244 (319)
-++|||||=+..+... ..+. ..|+.||+++. .-.+.+.|+.+.|++ ++.||+|.++
T Consensus 53 lrlLEVGals~~N~~s--~~~~-fdvt~IDLns~------------------~~~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGW-FDVTRIDLNSQ------------------HPGILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCccc--ccCc-eeeEEeecCCC------------------CCCceeeccccCCCCCCcccceeEEEEE
Confidence 5899999986655432 2222 36999999762 334678899887763 6899999999
Q ss_pred ccccCCCCHH---HHHHHHHHhhcCCCe-----eEEEEe
Q 020988 245 AALHCWPSPS---NAASVFSSSYSLLSI-----CYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~---~~l~el~rvlk~g~~-----~g~~~~ 275 (319)
.||+.+|+|. ++++.+++.|++.|. +.+++.
T Consensus 112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 9999999987 567778888999888 555555
No 209
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.07 E-value=3.8e-05 Score=69.63 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=64.8
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC--CCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPFA 234 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~~ 234 (319)
+...++.-.+.+|||+|+|.|..+..+.+..+ ..+++++|.|+.|++.++..+.... ......+ ..+.. ..++
T Consensus 25 l~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--~~~~~~~-~~~~~~~~~~~- 100 (274)
T PF09243_consen 25 LRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--NNRNAEW-RRVLYRDFLPF- 100 (274)
T ss_pred HHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--ccccchh-hhhhhcccccC-
Confidence 33334445678999999999987766665432 3579999999999999998765421 0111111 11111 1222
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCC
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g 267 (319)
...|+|++.++|..+++ ....+-+.++.+..
T Consensus 101 -~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~ 131 (274)
T PF09243_consen 101 -PPDDLVIASYVLNELPS-AARAELVRSLWNKT 131 (274)
T ss_pred -CCCcEEEEehhhhcCCc-hHHHHHHHHHHHhc
Confidence 23499999999999988 44344444443333
No 210
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=2.5e-06 Score=57.32 Aligned_cols=44 Identities=23% Similarity=0.595 Sum_probs=37.7
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~ 110 (319)
.++++||+|.++|..... .+.+.|+.|+..|++.+|+..++.++
T Consensus 6 LeiLaCP~~kg~L~~~~~---------~~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 6 LEILACPVCKGPLVYDEE---------KQELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred heeeeccCcCCcceEecc---------CCEEEecccCceeecccCccccCchh
Confidence 478999999999877653 35789999999999999999998654
No 211
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.06 E-value=5.6e-05 Score=73.31 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=66.4
Q ss_pred HHHHHh--hccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-
Q 020988 157 MAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (319)
Q Consensus 157 ~l~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (319)
.....+ ...++.+|||+++|.|.-+.+++... ....+++.|+++.-++..+++++..+ ..++.+...|...++
T Consensus 102 l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~ 178 (470)
T PRK11933 102 LPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGA 178 (470)
T ss_pred HHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhh
Confidence 334445 56789999999999999998888874 23589999999999999999998863 467888888887653
Q ss_pred CCCCCccEEEe
Q 020988 233 FASGFVDAVHA 243 (319)
Q Consensus 233 ~~~~~fD~V~~ 243 (319)
...+.||.|+.
T Consensus 179 ~~~~~fD~ILv 189 (470)
T PRK11933 179 ALPETFDAILL 189 (470)
T ss_pred hchhhcCeEEE
Confidence 22467999993
No 212
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.04 E-value=2.2e-05 Score=67.85 Aligned_cols=115 Identities=10% Similarity=0.097 Sum_probs=66.0
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC------ccCCCCeEEEEcCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN------TILTSNLALVRADVCR 230 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~------~~~~~~i~~~~~d~~~ 230 (319)
.+.+.+...++..++|||||.|....+++-.....+++|||+.+...+.|++...... ......+.+..+|+.+
T Consensus 33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 3445566778899999999999998877766545569999999998888765332210 0124567888999876
Q ss_pred CCCCC---CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 231 LPFAS---GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 231 lp~~~---~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.++.. ...|+|++++... ++ .+...+.+.+..++++..++-
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F---~~-~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCF---DP-DLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT----H-HHHHHHHHHHTTS-TT-EEEE
T ss_pred cHhHhhhhcCCCEEEEecccc---CH-HHHHHHHHHHhcCCCCCEEEE
Confidence 54211 3469999987642 33 345556666666666666654
No 213
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.02 E-value=3.2e-05 Score=70.87 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=74.5
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (319)
...+|+|.|.|+.+..+....+ ++-+++++...+-.++..+. ++|..+-+|+.+- .| +-|+|++..+|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P--~~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TP--KGDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CC--CcCeEEEEeec
Confidence 6899999999999999999777 79999999988877777642 4688888888664 33 34699999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 248 HCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 248 ~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
||+.| +..++-+.|+.+.+.++|.++.
T Consensus 247 hdwtD-edcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 247 HDWTD-EDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred ccCCh-HHHHHHHHHHHHhCCCCCEEEE
Confidence 99977 4456666666666666666665
No 214
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=9.9e-05 Score=65.26 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=85.8
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..++..++...||.+|+|-|.|+|.++..+++. +|..+++-.|+.+.-.+.|++.++..+ ...++++..-|+...-|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCCc
Confidence 356777888899999999999999999999888 577799999999999999999998875 56889999988877544
Q ss_pred --CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988 234 --ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 234 --~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
.+..+|+|+. -+|.|..++-.+..++|..|
T Consensus 172 ~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g 203 (314)
T KOG2915|consen 172 LIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEG 203 (314)
T ss_pred cccccccceEEE-----cCCChhhhhhhhHHHhhhcC
Confidence 4678999977 35666666655666655554
No 215
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.01 E-value=1.5e-05 Score=66.56 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=75.8
Q ss_pred HhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccE
Q 020988 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (319)
.+.....+.+.|+|+|+|.++..+++... +|++++.+|...+.|.+++.-. ...++.++.+|+.+..| +..|+
T Consensus 27 ai~~va~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~f--e~ADv 99 (252)
T COG4076 27 AIAEVAEDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYDF--ENADV 99 (252)
T ss_pred HHHHHhhhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCC---CCcceEEEecccccccc--cccce
Confidence 33334458999999999999988887754 9999999999999999986443 36789999999999988 46799
Q ss_pred EEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
|+|-. |.-.-=.+..+..+.++++-++..+.++.
T Consensus 100 vicEm-lDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 100 VICEM-LDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred eHHHH-hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 98732 11100012234456666665555555554
No 216
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00011 Score=70.20 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=85.7
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl 247 (319)
.++|.+|||+-.+...+.+.|. ..++-+|+|+-.++....+... ..+-+.+...|+..+.|++++||+|+.-+.+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~----~~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAK----ERPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhcccc----CCcceEEEEecchhccCCCcceeEEEecCcc
Confidence 3999999999999999998874 6899999999998888776532 2567889999999999999999999999999
Q ss_pred cCCCCHH----------HHHHHHHHhhcCCCeeEEEEe
Q 020988 248 HCWPSPS----------NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 248 ~h~~d~~----------~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++-.++ ..+.++.|++++++..-.+.+
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 8875332 336788999999988766655
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=97.95 E-value=9.6e-05 Score=66.22 Aligned_cols=98 Identities=8% Similarity=-0.033 Sum_probs=72.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..+.+||=||.|.|..++++.+.- .+|+-+|+++.+++.+++.+.... ....++++++.. +.+ -..++||+|++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence 456899999999999999999974 399999999999999999665422 123567777652 221 12368999997
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
-.. .+....+.+++.|+++|..-.
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEE
Confidence 632 335667888899888876544
No 218
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.0003 Score=59.44 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988 151 PDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (319)
Q Consensus 151 ~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (319)
.+...+.+..++.. -.+.++||+=+|+|.++.+++.+|. ..++.||.+...+...+++++..+ ...+..++..|+
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~da 102 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG--LEGEARVLRNDA 102 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC--CccceEEEeecH
Confidence 33344556666654 6789999999999999999999974 689999999999999999987742 236788888888
Q ss_pred CCC-C-CC-CCCccEEEecccccC-CCCHHHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988 229 CRL-P-FA-SGFVDAVHAGAALHC-WPSPSNAASVFSSSYSLLSICYLLQFRYTKI 280 (319)
Q Consensus 229 ~~l-p-~~-~~~fD~V~~~~vl~h-~~d~~~~l~el~rvlk~g~~~g~~~~~~~~~ 280 (319)
... + .. .++||+|++---++. +.++...+.. ..-.+.+.++++++++...-
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~-~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLL-LEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHH-HHhcCCcCCCcEEEEEeCCC
Confidence 743 1 22 235999998655441 1111221111 11334567777777765544
No 219
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.93 E-value=3.4e-05 Score=68.77 Aligned_cols=110 Identities=7% Similarity=0.073 Sum_probs=75.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCCC-CCCCC-CccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASG-FVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~-~fD~V 241 (319)
..+.+||=||.|.|..++.+.+..+..+++.+|+++.+++.|++.+..... ...++++++.+|.... .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 468899999999999999999876557999999999999999998765311 1357899999998552 22233 89999
Q ss_pred EecccccCCCC----HHHHHHHHHHhhcCCCeeEEEE
Q 020988 242 HAGAALHCWPS----PSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 242 ~~~~vl~h~~d----~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+.-..-...+. ....++.+++.|+++|......
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 98432211111 2466777888877766554443
No 220
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.92 E-value=0.00014 Score=72.00 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=65.4
Q ss_pred CCCCcHHHHHHHHHHhhcc-------CCCeEEEEcCCcChHHHHHHhhCC--------CCeEEEEeCCHHHHHHHHHHHh
Q 020988 147 GFPGPDEEFKMAQEYFKSA-------QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIK 211 (319)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~~~~l~~~g~--------~~~v~gvD~s~~~l~~a~~~~~ 211 (319)
.|+.|....+.|.+.+... ...+|||.|||+|.++..+.+... ..+++|+|+++..+..++.++.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 3556666666666655321 346899999999999988887542 2578999999999999998876
Q ss_pred hcCccCCCCeEEEEcCCCCCC-----CCCCCccEEEecc
Q 020988 212 QDNTILTSNLALVRADVCRLP-----FASGFVDAVHAGA 245 (319)
Q Consensus 212 ~~~~~~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~ 245 (319)
..+ ...+.+...|..... -..+.||+|+.+-
T Consensus 85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNP 120 (524)
T ss_pred hcC---CCCceeeecccccccccccccccCcccEEEeCC
Confidence 542 123445555533211 1125799999975
No 221
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.91 E-value=0.00015 Score=65.03 Aligned_cols=101 Identities=18% Similarity=0.084 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh---cCc---------------------------
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DNT--------------------------- 215 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~--------------------------- 215 (319)
...+||--|||.|+++..++..|. .+.|.|.|--|+-..+=-+.. .+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 457899999999999999999998 999999999986544322211 000
Q ss_pred -------cCCCCeEEEEcCCCCCCCCC---CCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988 216 -------ILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 216 -------~~~~~i~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
....++....||+.++...+ ++||+|+..+.|.-.++.-+.++.+.++|||||
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG 196 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG 196 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC
Confidence 11246777888888765444 799999999888888888899999999999998
No 222
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.86 E-value=0.00016 Score=66.88 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=81.3
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+.... .+|.+|||.=+|-|.|+..+++.+.. .|+++|++|.+++..+++++-++ ....+..+.+|..+.+..-
T Consensus 180 ~Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~~~ 254 (341)
T COG2520 180 ARVAELV--KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAPEL 254 (341)
T ss_pred HHHHhhh--cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhhcc
Confidence 3444443 34899999999999999999999863 39999999999999999998764 2334889999999987655
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
+.+|-|++... .+....+....+.++.++..
T Consensus 255 ~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~i 285 (341)
T COG2520 255 GVADRIIMGLP----KSAHEFLPLALELLKDGGII 285 (341)
T ss_pred ccCCEEEeCCC----CcchhhHHHHHHHhhcCcEE
Confidence 88999998743 23345566677777775543
No 223
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.82 E-value=0.00011 Score=69.44 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCCccEE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAV 241 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~V 241 (319)
.|++|||+=|=||.++..++..|. .+|++||.|...++.|+++++-++. ....+.++++|+.+. .-...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 389999999999999999988764 6999999999999999999987642 134578999998663 2234599999
Q ss_pred Eecc-cccC--------CCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 242 HAGA-ALHC--------WPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 242 ~~~~-vl~h--------~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
++-- ++-- ..|-..++....++|+|+|.+...
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9832 1111 112224455556666666655444
No 224
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.81 E-value=7.8e-05 Score=60.38 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=49.1
Q ss_pred eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
++||||||.|.++..+++.++..+++++|+++.+.+.++++++.++ ..++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence 4899999999999999999886689999999999999999887642 3457777766543
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.80 E-value=0.00021 Score=67.44 Aligned_cols=100 Identities=10% Similarity=0.121 Sum_probs=76.0
Q ss_pred CCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEec
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 244 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~ 244 (319)
+.+|||+.||+|..+..++... ....|+++|+++.+++.++++++.++ ..++.++..|+..+- .....||+|..-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 3589999999999999999873 23589999999999999999997652 346888888887642 123579999884
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
- + ..+...+..+.+.++.+|..++-
T Consensus 122 P-f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 P-F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 4 2 35567788888887777655544
No 226
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.00036 Score=65.14 Aligned_cols=120 Identities=14% Similarity=0.058 Sum_probs=83.5
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--------------------------------C-------eEEE
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------S-------GVVA 195 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--------------------------------~-------~v~g 195 (319)
...|..+..-.++..++|-=||+|.++.+++-.+.+ . .++|
T Consensus 180 AaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 180 AAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 344444444456679999999999999998877642 1 2779
Q ss_pred EeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccc-cCCCCH---HHHHHHHHHhh-cCCCee
Q 020988 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPSP---SNAASVFSSSY-SLLSIC 270 (319)
Q Consensus 196 vD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d~---~~~l~el~rvl-k~g~~~ 270 (319)
+|+++.+++.|+.+....+ ...-|.|.++|+..++-+-+.+|+|+++--. +-+.+. ..+.+++-+.+ +...-.
T Consensus 260 ~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 260 SDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred ecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999998864 5677999999999987443789999997521 223333 23444555455 444444
Q ss_pred EEEEee
Q 020988 271 YLLQFR 276 (319)
Q Consensus 271 g~~~~~ 276 (319)
...+|+
T Consensus 338 s~~v~t 343 (381)
T COG0116 338 SRYVFT 343 (381)
T ss_pred ceEEEE
Confidence 455553
No 227
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.78 E-value=0.00064 Score=58.91 Aligned_cols=120 Identities=12% Similarity=0.132 Sum_probs=83.9
Q ss_pred CCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc
Q 020988 148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226 (319)
Q Consensus 148 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~ 226 (319)
+....+....+..++....++++||||.=||+-+..++...| ..+|+++|++++..+.+.+..+..+ ..+.++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g 132 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEG 132 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeec
Confidence 344455556666666667789999999999987777776643 4699999999999999988777754 5678999999
Q ss_pred CCCC-CC-----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 227 DVCR-LP-----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 227 d~~~-lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++.+ ++ ...++||+++.- | |.........+.++.++++|++++
T Consensus 133 ~a~esLd~l~~~~~~~tfDfaFvD----a--dK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 133 PALESLDELLADGESGTFDFAFVD----A--DKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred chhhhHHHHHhcCCCCceeEEEEc----c--chHHHHHHHHHHHhhcccccEEEE
Confidence 8754 11 346899999763 3 333333444455555555555555
No 228
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=0.00043 Score=60.07 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=71.9
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA 246 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v 246 (319)
+.+++|||.|.|.-+..++-..|..+|+-+|....-+...+.-..+. ...|++++.+.++++.-....||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 58999999999999888887778889999999887777666655554 367899999999988632111999999754
Q ss_pred ccCCCCHHHHHHHHHHhhcCCCee
Q 020988 247 LHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 247 l~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
.+......-....+|.+|.+
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~ 164 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGF 164 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcc
Confidence 23444455566677776543
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00024 Score=60.97 Aligned_cols=110 Identities=17% Similarity=0.071 Sum_probs=75.5
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------CC
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 234 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~ 234 (319)
..++..|+|+|+..|.|+..+++.. ....|+|+|+.|-- ..+++.++++|++.-+ +.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 3578999999999999999888874 44469999997731 2467999999997744 34
Q ss_pred CCCccEEEecccc--------cCCCCH---HHHHHHHHHhhcCCCeeEEEEeeccchhcccCCc
Q 020988 235 SGFVDAVHAGAAL--------HCWPSP---SNAASVFSSSYSLLSICYLLQFRYTKIIELDNDN 287 (319)
Q Consensus 235 ~~~fD~V~~~~vl--------~h~~d~---~~~l~el~rvlk~g~~~g~~~~~~~~~~~~~~~~ 287 (319)
...+|+|++-.+- .|.... ..++.-...+|+++|.+-.-+|......+.....
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~ 172 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL 172 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHH
Confidence 5668999974322 222111 1234445568889888888888665555544433
No 230
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=4.4e-05 Score=73.01 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
+..+..+.+++....+..+||+-||||.++..+++... +|+|++++++.++.|+++...+ ...|.+|+++-++++
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~N---gisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQIN---GISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhc---Cccceeeeecchhhc
Confidence 34467888888888889999999999999999988765 9999999999999999998776 477999999966553
No 231
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.72 E-value=0.00041 Score=71.01 Aligned_cols=79 Identities=19% Similarity=0.229 Sum_probs=63.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhC------------------------------------------CCCeEEEEeCCHHH
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSG------------------------------------------TYSGVVALDFSENM 202 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g------------------------------------------~~~~v~gvD~s~~~ 202 (319)
.++..++|.+||+|.++.+++... ...+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 457899999999999998876531 01269999999999
Q ss_pred HHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC--CCCccEEEecc
Q 020988 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGA 245 (319)
Q Consensus 203 l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~ 245 (319)
++.|++++...+ ....+.+.++|+.+++.+ .++||+|+++-
T Consensus 269 v~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP 311 (702)
T PRK11783 269 IQAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNP 311 (702)
T ss_pred HHHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECC
Confidence 999999998764 334689999999887643 35799999985
No 232
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.72 E-value=1.7e-05 Score=67.29 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------CC--
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA-- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~-- 234 (319)
++.++||+||++|.|+..+.+.+ +..+|+|+|+.+. . ...++.++++|+.+.. +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~-----~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------D-----PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------G-----S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------c-----cccceeeeecccchhhHHHhhhhhcccc
Confidence 45899999999999999999987 4469999999875 0 1246677777764321 11
Q ss_pred CCCccEEEecccccCCCC----HH-------HHHHHHHHhhcCCCeeEEEEee
Q 020988 235 SGFVDAVHAGAALHCWPS----PS-------NAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d----~~-------~~l~el~rvlk~g~~~g~~~~~ 276 (319)
.+.||+|++-.+.....+ .. ..+.-+.+.|+++|.+-+-+|.
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 268999999764333222 11 2233334566777766666664
No 233
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=97.69 E-value=2.1e-05 Score=55.61 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=30.9
Q ss_pred cccCeeeccCCCcccccc---CC----------------CCCcccceecCceeeCccCCccccCCc
Q 020988 56 LEGDLFSCPICYEPLIRK---GP----------------TGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 56 ~~~~~l~CP~C~~~l~~~---~~----------------~~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
++-++++||.|.+||... .. ...-...+..+.+.|++||+.|++++|
T Consensus 3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 356899999999998100 00 000012455689999999999999876
No 234
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.65 E-value=0.00055 Score=63.14 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=67.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.++|||||++|.|+..+.+.|. +|++||..+ +.. .+. ..+++....+|........+.+|.|+|-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~----~L~-----~~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQ----SLM-----DTGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCH----hhh-----CCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 5789999999999999999999986 999999654 222 122 2468888888876653235789999885
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
-+ ..|.+..+-+.+-+..| .....+|
T Consensus 278 mv----e~P~rva~lm~~Wl~~g-~cr~aIf 303 (357)
T PRK11760 278 MV----EKPARVAELMAQWLVNG-WCREAIF 303 (357)
T ss_pred cc----cCHHHHHHHHHHHHhcC-cccEEEE
Confidence 43 35777777777766555 3333444
No 235
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.56 E-value=0.00066 Score=61.65 Aligned_cols=109 Identities=18% Similarity=0.168 Sum_probs=70.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C-C-CCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-ASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-~~~~fD~V 241 (319)
..+.+|||+=|=||.|+..++..| ..+|+.||.|..+++.+++++.-++. ...++++++.|+.+. . . ..++||+|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~-~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGL-DLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 457899999999999999888766 35799999999999999999887642 235789999998652 1 1 24689999
Q ss_pred Eecc-cccC-CCCHHHH-HHHHHHhhcCCCeeEEEEe
Q 020988 242 HAGA-ALHC-WPSPSNA-ASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 242 ~~~~-vl~h-~~d~~~~-l~el~rvlk~g~~~g~~~~ 275 (319)
++-- .+-. -.+..+. .+-+.+.++.+.++|.+++
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~ 236 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLT 236 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9832 1111 1122222 2223445555666676665
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.55 E-value=0.00027 Score=61.14 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=55.9
Q ss_pred EEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCCCCCccEEEeccc
Q 020988 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAGAA 246 (319)
Q Consensus 170 VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~v 246 (319)
|.||||-.|++...+.+.+...+++++|+++..++.|++++...+ ...++++..+|-.. ++. .+..|+|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEVLKP-GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--G-GG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCcccccCC-CCCCCEEEEecC
Confidence 689999999999999999977789999999999999999998864 45789999999543 432 233788887654
No 237
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.0017 Score=61.05 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=68.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
........+.+.++.+|||..++.|.=+.++++...+ ..|+++|.++.-++..+++++..| ..++..+..|...+
T Consensus 144 sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~ 220 (355)
T COG0144 144 ASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRL 220 (355)
T ss_pred HHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccccc
Confidence 3455556778899999999999999988888888653 357999999999999999998863 55677888887665
Q ss_pred C---CCCCCccEEEe
Q 020988 232 P---FASGFVDAVHA 243 (319)
Q Consensus 232 p---~~~~~fD~V~~ 243 (319)
+ ...++||.|+.
T Consensus 221 ~~~~~~~~~fD~iLl 235 (355)
T COG0144 221 AELLPGGEKFDRILL 235 (355)
T ss_pred cccccccCcCcEEEE
Confidence 4 22236999996
No 238
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.53 E-value=0.00068 Score=62.00 Aligned_cols=87 Identities=10% Similarity=0.161 Sum_probs=70.5
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (319)
.+.+.+.+...+++.++|.=+|.|..+..+++..+..+|+|+|.++.+++.+++++... ..++.++.+++.++.
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFEH 84 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHHH
Confidence 45566677777889999999999999999998865579999999999999999988653 458999999887753
Q ss_pred ---CCCCCccEEEecc
Q 020988 233 ---FASGFVDAVHAGA 245 (319)
Q Consensus 233 ---~~~~~fD~V~~~~ 245 (319)
....++|.|+...
T Consensus 85 l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 85 LDELLVTKIDGILVDL 100 (305)
T ss_pred HHhcCCCcccEEEEec
Confidence 1335799998854
No 239
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.52 E-value=0.0005 Score=58.10 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=73.9
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
...+++|||+|.|+|..+...++.|. ..|+..|+.+......+-+.+.+ ...+.+...|... .+..||+|+.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~~~~Dl~La 148 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SPPAFDLLLA 148 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CCcceeEEEe
Confidence 34789999999999999999999874 68999999998888888777764 3567777777655 4678999999
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCC
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
+.++..-+--.+.+.-+.++...|.
T Consensus 149 gDlfy~~~~a~~l~~~~~~l~~~g~ 173 (218)
T COG3897 149 GDLFYNHTEADRLIPWKDRLAEAGA 173 (218)
T ss_pred eceecCchHHHHHHHHHHHHHhCCC
Confidence 9987755455566664455544443
No 240
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.52 E-value=3.8e-05 Score=65.18 Aligned_cols=87 Identities=15% Similarity=0.056 Sum_probs=68.3
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
.+.++||+|+|.|..+..++.... +|++.++|..|....+++ +..++. ..+..-.+-+||+|.|.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~--~~ew~~t~~k~dli~clN 177 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLT--EIEWLQTDVKLDLILCLN 177 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceee--ehhhhhcCceeehHHHHH
Confidence 457999999999999999988765 899999999998877664 222222 112111244799999999
Q ss_pred cccCCCCHHHHHHHHHHhhcC
Q 020988 246 ALHCWPSPSNAASVFSSSYSL 266 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~ 266 (319)
.|.--.+|-+.++.++.+++|
T Consensus 178 lLDRc~~p~kLL~Di~~vl~p 198 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAP 198 (288)
T ss_pred HHHhhcChHHHHHHHHHHhcc
Confidence 999888999999999999998
No 241
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.40 E-value=0.00033 Score=60.17 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=63.3
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCCccEE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAV 241 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~V 241 (319)
....|+|.-||.|..+.+++..++ .|++||+++.-+..|+.+++-.| ...+++|++||+.++ .+....+|+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD~ld~~~~lq~~K~~~~~v 169 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYG--VPDRITFICGDFLDLASKLKADKIKYDCV 169 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeec--CCceeEEEechHHHHHHHHhhhhheeeee
Confidence 457899999999999999999988 99999999999999999988765 345999999998764 3444456687
Q ss_pred Eeccc
Q 020988 242 HAGAA 246 (319)
Q Consensus 242 ~~~~v 246 (319)
+.+..
T Consensus 170 f~spp 174 (263)
T KOG2730|consen 170 FLSPP 174 (263)
T ss_pred ecCCC
Confidence 77543
No 242
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.34 E-value=0.002 Score=55.53 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=68.4
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-C
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-A 234 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~ 234 (319)
..+.+++.. +.++.||||-.+++...+.+.++...+++.|+++..++.|.+++.+.+ ..++++...+|... ++ .
T Consensus 8 ~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~-~l~~ 82 (226)
T COG2384 8 TTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLA-VLEL 82 (226)
T ss_pred HHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCcc-ccCc
Confidence 445555533 456999999999999999999998999999999999999999998764 56778888888733 33 3
Q ss_pred CCCccEEEeccc
Q 020988 235 SGFVDAVHAGAA 246 (319)
Q Consensus 235 ~~~fD~V~~~~v 246 (319)
+..+|+|+..++
T Consensus 83 ~d~~d~ivIAGM 94 (226)
T COG2384 83 EDEIDVIVIAGM 94 (226)
T ss_pred cCCcCEEEEeCC
Confidence 447999987654
No 243
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.31 E-value=0.0025 Score=56.97 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=59.1
Q ss_pred CCeEEEEcCCc--ChHHHHHHh-hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCC--eEEEEcCCCCCC---------
Q 020988 167 GGLLVDVSCGS--GLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCRLP--------- 232 (319)
Q Consensus 167 ~~~VLDiGcG~--G~~~~~l~~-~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--i~~~~~d~~~lp--------- 232 (319)
=...||||||- -..+.++++ ..|..+|+-+|.++-.+..++..+... .+ ..++++|+.+..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-----~~g~t~~v~aD~r~p~~iL~~p~~~ 143 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-----PRGRTAYVQADLRDPEAILAHPEVR 143 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-HHHHHCSHHHH
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-----CCccEEEEeCCCCCHHHHhcCHHHH
Confidence 35799999993 334444544 468889999999999999999988653 44 889999997632
Q ss_pred --CCCCCccEEEecccccCCCC---HHHHHHHHHHhhcCCCeeEEE
Q 020988 233 --FASGFVDAVHAGAALHCWPS---PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 233 --~~~~~fD~V~~~~vl~h~~d---~~~~l~el~rvlk~g~~~g~~ 273 (319)
+.-..-=.|++..+|||++| +...++.++..|-||..+.+-
T Consensus 144 ~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is 189 (267)
T PF04672_consen 144 GLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS 189 (267)
T ss_dssp CC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred hcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence 11122236778889999987 445555666665565544443
No 244
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.21 E-value=0.0013 Score=55.82 Aligned_cols=103 Identities=17% Similarity=0.307 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc----cCCCCeEEEEcCCCC-CC--CCCCCc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCR-LP--FASGFV 238 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~i~~~~~d~~~-lp--~~~~~f 238 (319)
+.-.+.|||||.|.++..++...|...+.|+++-....++.++++...+. ....|+.+...+... +| |..++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 34678999999999999999999999999999999999999988876421 113456666655433 23 222222
Q ss_pred cEEEecccccCCCCHH-------------HHHHHHHHhhcCCCeeEEE
Q 020988 239 DAVHAGAALHCWPSPS-------------NAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~-------------~~l~el~rvlk~g~~~g~~ 273 (319)
+-. +..++||. ..+.+..=+++.+|..+.+
T Consensus 140 skm-----ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 140 SKM-----FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred ccc-----eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 222 33344442 3355666678888776655
No 245
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.20 E-value=0.0037 Score=56.92 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=84.5
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (319)
.......+.+.++.+|||+.+|.|.-+..+++... ...+++.|+++.-++..+++++.. ...++.....|.....
T Consensus 74 S~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~---g~~~v~~~~~D~~~~~~ 150 (283)
T PF01189_consen 74 SQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL---GVFNVIVINADARKLDP 150 (283)
T ss_dssp HHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT---T-SSEEEEESHHHHHHH
T ss_pred cccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc---CCceEEEEeeccccccc
Confidence 34445567788999999999999999888888753 569999999999999999988876 3567888877776651
Q ss_pred -CCCCCccEEEe------cccccCCCCHHHH-------------HHHHHHhhcCC----CeeEEEEe
Q 020988 233 -FASGFVDAVHA------GAALHCWPSPSNA-------------ASVFSSSYSLL----SICYLLQF 275 (319)
Q Consensus 233 -~~~~~fD~V~~------~~vl~h~~d~~~~-------------l~el~rvlk~g----~~~g~~~~ 275 (319)
.....||.|+. .+++..-++.... .+-+...++-. +++|.+++
T Consensus 151 ~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvY 217 (283)
T PF01189_consen 151 KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVY 217 (283)
T ss_dssp HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEE
T ss_pred cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 22346999996 2355555543211 22234456667 78888888
No 246
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0041 Score=53.45 Aligned_cols=104 Identities=9% Similarity=0.121 Sum_probs=77.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 242 (319)
.++++||.||-|-|.....+.+.-+ .+-+-++..++.++..++.. +....|+..+.+--++. .++++.||-|+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~g----w~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWG----WREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcc----cccccceEEEecchHhhhccccccCcceeE
Confidence 6799999999999998877777654 45678999999998777643 33456777777643332 24578899998
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
--..-+|..|...+.+.+.|+|||+|.+..+
T Consensus 175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 7655577778778888888999998765543
No 247
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.14 E-value=0.014 Score=52.78 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=61.5
Q ss_pred CCeEEEEcCCcChHHHHHHh--hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 167 GGLLVDVSCGSGLFSRKFAK--SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~--~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
+.+|+=||+|.=-++.-+.. .+....|+++|+++.+++.+++-.... .+...++.|+.+|....+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccccccCCEEEEh
Confidence 45999999998766544443 345568999999999999999877621 123578999999998776545689999886
Q ss_pred cccc-CCCCHHHHHHHHHHhhcCCC
Q 020988 245 AALH-CWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 245 ~vl~-h~~d~~~~l~el~rvlk~g~ 268 (319)
.-.. --.+..+.++.+.+..++|.
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga 224 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGA 224 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTS
T ss_pred hhcccccchHHHHHHHHHhhCCCCc
Confidence 5433 22367788999999988877
No 248
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.11 E-value=0.0012 Score=59.03 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=66.1
Q ss_pred cCCCeEEEEcCCcChH-HHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-C-------------C-----------
Q 020988 165 AQGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-L-------------T----------- 218 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~-~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~-------------~----------- 218 (319)
.++.++||||||.-.. +..+.+. ..+++..|.++.-++..++-++..+.. + .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3567999999998544 2223333 348999999999888777665543110 0 0
Q ss_pred CCe-EEEEcCCCCCC-CCC-----CCccEEEecccccCCC-CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 219 SNL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 219 ~~i-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..| .++.+|+.+.+ +.. ++||+|++.++|+..- |.+...+.+.++.+.++|+|.+++
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 112 36778887753 322 3599999999999754 677666666666666666666665
No 249
>PRK10742 putative methyltransferase; Provisional
Probab=97.09 E-value=0.0036 Score=55.38 Aligned_cols=93 Identities=15% Similarity=0.014 Sum_probs=69.5
Q ss_pred HHHHHHhhccCCC--eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC----cc--CCCCeEEEEcC
Q 020988 156 KMAQEYFKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN----TI--LTSNLALVRAD 227 (319)
Q Consensus 156 ~~l~~~l~~~~~~--~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~--~~~~i~~~~~d 227 (319)
+.+.+.+...++. +|||.=+|.|..+..++..|. +|+++|-++.+....++.+.... .. ...+++++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4556666666666 899999999999999999976 79999999999888887776520 00 11468888888
Q ss_pred CCCC-CCCCCCccEEEecccccCC
Q 020988 228 VCRL-PFASGFVDAVHAGAALHCW 250 (319)
Q Consensus 228 ~~~l-p~~~~~fD~V~~~~vl~h~ 250 (319)
..+. .-...+||+|++--.+.|-
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCCC
Confidence 7553 2123479999987777764
No 250
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0018 Score=52.24 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
..+..+.+..++...+.++.+|+|.|.|+...+.++.+ -...+|+++++-.+.+++-+.-..+ ......|..-|+..
T Consensus 57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWK 133 (199)
T ss_pred cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhh
Confidence 34445666777777788999999999999999998887 2478999999999888876554332 45677888888888
Q ss_pred CCCCCCCccEEEecccccCCCCHHH
Q 020988 231 LPFASGFVDAVHAGAALHCWPSPSN 255 (319)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~ 255 (319)
..+.+ |..|+.+.+-.-++|.+.
T Consensus 134 ~dl~d--y~~vviFgaes~m~dLe~ 156 (199)
T KOG4058|consen 134 VDLRD--YRNVVIFGAESVMPDLED 156 (199)
T ss_pred ccccc--cceEEEeehHHHHhhhHH
Confidence 77654 555555554444555543
No 251
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00054 Score=56.09 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC--CCCCCCCccEEE
Q 020988 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDAVH 242 (319)
Q Consensus 166 ~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~~~fD~V~ 242 (319)
.+.+|||+|.|. |..+..++...+...|...|-++..++..++....+.......+..+..+... ......+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 467899999994 65666666667778999999999999988876543211112222222222211 112346899999
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
+...+..-...+...+-++++|+|-|.
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccc
Confidence 998776544556777889999999887
No 252
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.00 E-value=0.0042 Score=56.62 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=51.0
Q ss_pred HHHHHHHhhccC-----CCeEEEEcCCcChHHHHH--HhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC
Q 020988 155 FKMAQEYFKSAQ-----GGLLVDVSCGSGLFSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (319)
Q Consensus 155 ~~~l~~~l~~~~-----~~~VLDiGcG~G~~~~~l--~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d 227 (319)
...+.+++.... .-++||||+|..-.-..+ ...++ +++|+|+++..++.|+++++.+ .....+|.++...
T Consensus 86 i~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N-~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 86 IHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERN-PNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEE--
T ss_pred HHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhc-cccccceEEEEcC
Confidence 445556664322 357999999987542222 22355 9999999999999999999875 2246678887653
Q ss_pred CCC-----CCCCCCCccEEEecccccCCC
Q 020988 228 VCR-----LPFASGFVDAVHAGAALHCWP 251 (319)
Q Consensus 228 ~~~-----lp~~~~~fD~V~~~~vl~h~~ 251 (319)
-.. +...++.||+.+|+--++.-.
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE-----SS-
T ss_pred CccccchhhhcccceeeEEecCCccccCh
Confidence 221 222346899999987766543
No 253
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.0035 Score=52.70 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=51.9
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCC--------CC
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PF 233 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~l--------p~ 233 (319)
..|+.+|||+||..|.|+.-+.+. +|+.-|.|||+-.- ....++.++++ |+.+. .+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCcccccccccCCHHHHHHHHHhC
Confidence 357899999999999999888877 48889999998331 13467777777 66542 14
Q ss_pred CCCCccEEEecc
Q 020988 234 ASGFVDAVHAGA 245 (319)
Q Consensus 234 ~~~~fD~V~~~~ 245 (319)
++...|+|++-.
T Consensus 133 p~r~VdvVlSDM 144 (232)
T KOG4589|consen 133 PNRPVDVVLSDM 144 (232)
T ss_pred CCCcccEEEecc
Confidence 678999999854
No 254
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.91 E-value=0.0039 Score=55.05 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=61.1
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|+|||||.=-++.......+...++|+|++..+++...+.+... ..+.++...|+..-+ +....|+.+..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~~-~~~~~DlaLll 178 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSDP-PKEPADLALLL 178 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTSH-TTSEESEEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeeccC-CCCCcchhhHH
Confidence 3478999999999999888777766779999999999999999887663 467778888887654 35789999998
Q ss_pred ccccCCC
Q 020988 245 AALHCWP 251 (319)
Q Consensus 245 ~vl~h~~ 251 (319)
=+++.+.
T Consensus 179 K~lp~le 185 (251)
T PF07091_consen 179 KTLPCLE 185 (251)
T ss_dssp T-HHHHH
T ss_pred HHHHHHH
Confidence 7777663
No 255
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.86 E-value=0.024 Score=49.29 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=68.7
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCc
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV 238 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f 238 (319)
...++.+||-+|.++|....++++- ++...|+++++|+...+..-.-.++ .+|+--+..|+.... .--+.+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--E
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhcccccc
Confidence 4568999999999999999999887 5577999999999665554433333 268887888987531 113589
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
|+|++--+ +-....-+.......||++|.+-+.+-
T Consensus 145 DvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 145 DVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 99988522 222223445566678888876655543
No 256
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.018 Score=50.43 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=69.1
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEE-EEcCCCCCC---CCCCCcc
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLP---FASGFVD 239 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp---~~~~~fD 239 (319)
..++..+||||..||.|+.-+.+.|. ..|+++|...+.+.+--+. .+++.. ...|+..+. +. +..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~-~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFT-EKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcc-cCCC
Confidence 45789999999999999999999974 6999999998777654442 344443 445665543 32 3678
Q ss_pred EEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 240 AVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
++++--++- .....+-.+..++++++..-.+
T Consensus 147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred eEEEEeehh---hHHHHHHHHHHhcCCCceEEEE
Confidence 888865544 4466777888888877654444
No 257
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.71 E-value=0.013 Score=54.23 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=59.6
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH--HHhhcC--ccCCCCeEEEEcCCCCC-CCCCCCccEE
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD--FIKQDN--TILTSNLALVRADVCRL-PFASGFVDAV 241 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~--~~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~V 241 (319)
-.+||-+|.|.|..++++.+.-...+++-+|++|.|++.+++ .+...| ....++++++..|+.+. .-..+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 468999999999999999987325689999999999999983 333322 23457899999888764 2234689999
Q ss_pred Eec
Q 020988 242 HAG 244 (319)
Q Consensus 242 ~~~ 244 (319)
+.-
T Consensus 370 IVD 372 (508)
T COG4262 370 IVD 372 (508)
T ss_pred EEe
Confidence 873
No 258
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.66 E-value=0.0049 Score=56.43 Aligned_cols=85 Identities=18% Similarity=0.289 Sum_probs=60.6
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 232 (319)
+.+.+.+...+++.++|.=-|.|..+..+++..++.+++|+|.++.+++.+++++... ..++.++.+++.++.
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHHH
Confidence 4556677778899999999999999999999877789999999999999999887652 468888888876653
Q ss_pred --C-CCCCccEEEec
Q 020988 233 --F-ASGFVDAVHAG 244 (319)
Q Consensus 233 --~-~~~~fD~V~~~ 244 (319)
. ....+|.|++-
T Consensus 86 ~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 86 KELNGINKVDGILFD 100 (310)
T ss_dssp HHTTTTS-EEEEEEE
T ss_pred HHccCCCccCEEEEc
Confidence 2 23467777763
No 259
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.56 E-value=0.0017 Score=49.75 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=42.0
Q ss_pred EEEcCCcChHHHHHHhhCCC---CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEEecc
Q 020988 171 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGA 245 (319)
Q Consensus 171 LDiGcG~G~~~~~l~~~g~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~ 245 (319)
||||+..|..+..+++.... .+++++|+.+. .+.+++.+++. ....+++++.++..+. .+..+++|+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 69999999988877765322 26999999994 22222222221 1345799999998653 23357999998753
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
. | +.+.....+..+++.+.++|++++.
T Consensus 78 ~--H--~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 D--H--SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred C--C--CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 1 2 3456677777788888888888874
No 260
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.54 E-value=0.0034 Score=47.96 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=28.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCC
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s 199 (319)
.+....+|||||+|.+..-|.+.|. .-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 3566899999999999999999988 88899973
No 261
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=96.42 E-value=0.0019 Score=45.80 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=33.2
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeC--ccCCccccCCceeeecc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTV 108 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~--~Cg~~f~~~~g~~~~~~ 108 (319)
|+.||.|++.........++.+ ..+.+..|. +||++|...+.+...+.
T Consensus 1 mm~CP~Cg~~a~irtSr~~s~~-~~~~Y~qC~N~eCg~tF~t~es~s~tis 50 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYITDT-TKERYHQCQNVNCSATFITYESVQRYIV 50 (72)
T ss_pred CccCCCCCCccEEEEChhcChh-hheeeeecCCCCCCCEEEEEEEEEEEEc
Confidence 5789999996543333333333 455788998 89999977666666653
No 262
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.026 Score=51.27 Aligned_cols=104 Identities=15% Similarity=0.045 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHH---hhcCc---------------------------
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDNT--------------------------- 215 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~---~~~~~--------------------------- 215 (319)
..-+||--|||.|+++..++..|+ .+-|=++|--|+-.-.=-+ +..|.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 456899999999999999999999 7777788887753322111 11100
Q ss_pred -------cCCCCeEEEEcCCCCCC---CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 216 -------ILTSNLALVRADVCRLP---FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 216 -------~~~~~i~~~~~d~~~lp---~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
..........||+.+.- -..++||+|+.++.+.--.+.-+.+.-+..+|||||..-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 00112222335554431 123479999999888777777778888888888876543
No 263
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.19 E-value=0.042 Score=49.78 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=70.1
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP- 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp- 232 (319)
...+.+.|...+++..+|.==|.|..+..+.+.++ ..+++|+|-++.+++.|++++... ..++.++.+++.++.
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l~~ 87 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANLAE 87 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHHHH
Confidence 34566677788899999999999999999999975 356999999999999999998774 468999998876653
Q ss_pred ----CCCCCccEEEecc
Q 020988 233 ----FASGFVDAVHAGA 245 (319)
Q Consensus 233 ----~~~~~fD~V~~~~ 245 (319)
...+.+|-|+.--
T Consensus 88 ~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 88 ALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHhcCCCceeEEEEec
Confidence 2245788887643
No 264
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.07 E-value=0.023 Score=49.98 Aligned_cols=92 Identities=18% Similarity=0.148 Sum_probs=53.2
Q ss_pred HHHHHHhhccCC--CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH---HHhhcCcc---CCCCeEEEEcC
Q 020988 156 KMAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD---FIKQDNTI---LTSNLALVRAD 227 (319)
Q Consensus 156 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~---~~~~~~~~---~~~~i~~~~~d 227 (319)
+.+.+.....++ .+|||.=+|-|.-+..++..|. +|+++|-|+-+....+. +....... ...+++++.+|
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 345555655544 4899999999999988888776 99999999977555443 33221000 01379999999
Q ss_pred CCC-CCCCCCCccEEEecccccC
Q 020988 228 VCR-LPFASGFVDAVHAGAALHC 249 (319)
Q Consensus 228 ~~~-lp~~~~~fD~V~~~~vl~h 249 (319)
..+ ++.++.+||+|+.--.+.|
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S---
T ss_pred HHHHHhhcCCCCCEEEECCCCCC
Confidence 877 5555789999999777776
No 265
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=96.03 E-value=0.0082 Score=40.08 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=23.4
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
++.||.|++.+...+. . ....+.|+.||..+
T Consensus 2 ~~~CP~CG~~iev~~~--~-----~GeiV~Cp~CGael 32 (54)
T TIGR01206 2 QFECPDCGAEIELENP--E-----LGELVICDECGAEL 32 (54)
T ss_pred ccCCCCCCCEEecCCC--c-----cCCEEeCCCCCCEE
Confidence 4689999998866542 1 13567999999999
No 266
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=95.96 E-value=0.0039 Score=38.31 Aligned_cols=35 Identities=20% Similarity=0.549 Sum_probs=23.2
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
..+||.|+..+...+.. +. .....++|+.|++.|.
T Consensus 2 ~i~CP~C~~~f~v~~~~-l~---~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK-LP---AGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHH-cc---cCCcEEECCCCCcEee
Confidence 46899999976543320 10 1125789999999984
No 267
>PRK11524 putative methyltransferase; Provisional
Probab=95.90 E-value=0.035 Score=50.57 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
..+.+.... ..+|+.|||-=+|+|..+.++.+.+. +.+|+|++++.++.|++|+..
T Consensus 197 L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 344444443 36799999999999999999988876 999999999999999999853
No 268
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=95.85 E-value=0.0046 Score=34.74 Aligned_cols=24 Identities=25% Similarity=0.647 Sum_probs=18.5
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
.||.|+..... ....|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999996643 3358999999883
No 269
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.85 E-value=0.041 Score=54.07 Aligned_cols=145 Identities=15% Similarity=0.053 Sum_probs=96.6
Q ss_pred chhhHHhHHhHHHhhh---h--CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC----CCeEEEEeCC
Q 020988 129 PFVSFLYERGWRQNFN---R--SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFS 199 (319)
Q Consensus 129 ~~~s~~~~~~w~~~~~---~--~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~----~~~v~gvD~s 199 (319)
+.+...|+...++... + ..|+.|.+..+.+.+.+.+.+..+|+|-.||+|.++....+... ...++|.|++
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~ 223 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN 223 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence 3445555544333222 2 45889999999999999877778999999999998877766532 2579999999
Q ss_pred HHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-----CCCCccEEEeccccc---CCC--------------------
Q 020988 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----ASGFVDAVHAGAALH---CWP-------------------- 251 (319)
Q Consensus 200 ~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~~~~fD~V~~~~vl~---h~~-------------------- 251 (319)
+.....|+-+.--++... ++....+|...-|. ....||.|+++--+. +..
T Consensus 224 ~~t~~l~~mN~~lhgi~~--~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489)
T COG0286 224 DTTYRLAKMNLILHGIEG--DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK 301 (489)
T ss_pred HHHHHHHHHHHHHhCCCc--cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence 999999998875543211 33444554433332 236799988854221 110
Q ss_pred -CH-HHHHHHHHHhhcCCCeeEEEEe
Q 020988 252 -SP-SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 252 -d~-~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.. ...++.+...++|++..+++++
T Consensus 302 ~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 302 NSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred CchHHHHHHHHHHhcCCCceEEEEec
Confidence 01 3557888888898877777766
No 270
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=95.77 E-value=0.0051 Score=35.78 Aligned_cols=27 Identities=19% Similarity=0.578 Sum_probs=14.9
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
-.||.|++.....+. ..+.|+.|++.+
T Consensus 3 p~Cp~C~se~~y~D~----------~~~vCp~C~~ew 29 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDG----------ELLVCPECGHEW 29 (30)
T ss_dssp ---TTT-----EE-S----------SSEEETTTTEEE
T ss_pred CCCCCCCCcceeccC----------CEEeCCcccccC
Confidence 479999997766543 789999999875
No 271
>PRK00420 hypothetical protein; Validated
Probab=95.73 E-value=0.0063 Score=47.02 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=23.8
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCccccCC
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~ 101 (319)
-.||+||.||..... +...|++||..+....
T Consensus 24 ~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 24 KHCPVCGLPLFELKD----------GEVVCPVHGKVYIVKS 54 (112)
T ss_pred CCCCCCCCcceecCC----------CceECCCCCCeeeecc
Confidence 579999999987332 6789999999775443
No 272
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.70 E-value=0.035 Score=49.58 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=51.9
Q ss_pred CCeEEEEcCCcChHHHHHHhhCC--------CCeEEEEeCCHHHHHHHHHHHhhcC---ccCCCCeEEEEcCCCCCCCCC
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQDN---TILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~--------~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+-+|+|+|+|+|.++..+++... ..+++-||+|+.+.+..++++.... .....++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 47999999999999988877632 3589999999999999888875520 001234555 23444444
Q ss_pred CCccEEEecccccCCC
Q 020988 236 GFVDAVHAGAALHCWP 251 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~ 251 (319)
..-+|+++.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 345777777777765
No 273
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=95.58 E-value=0.0065 Score=48.03 Aligned_cols=25 Identities=36% Similarity=0.756 Sum_probs=21.9
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.||.||.||+.++ +.+.|+.|++..
T Consensus 30 hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~ 54 (131)
T COG1645 30 HCPKCGTPLFRKD-----------GEVFCPVCGYRE 54 (131)
T ss_pred hCcccCCcceeeC-----------CeEECCCCCceE
Confidence 5999999999965 778999999866
No 274
>PRK13699 putative methylase; Provisional
Probab=95.55 E-value=0.064 Score=47.23 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
|.+..+.+.... ..+++.|||-=||+|..+.++.+.+. +.+|+|+++...+.+.+++..
T Consensus 149 P~~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 149 PVTSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred cHHHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence 344444444433 35789999999999999999888876 999999999999999999865
No 275
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.55 E-value=0.048 Score=47.17 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 020988 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (319)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~ 208 (319)
|.+..+.+.... ..++..|||.=||+|..+.++.+.+. +.+|+|+++..++.|++
T Consensus 177 P~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 344455555554 35789999999999999999999877 99999999999998874
No 276
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.37 E-value=0.075 Score=45.81 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=49.8
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
.+++++-..++..|+|+|.-.|.-+..+++. +...+|+|+|++....... .++. ....++|++++||..+..
T Consensus 23 ~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~--hp~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 23 AYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIES--HPMSPRITFIQGDSIDPE 98 (206)
T ss_dssp HHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTH
T ss_pred HHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhh--ccccCceEEEECCCCCHH
Confidence 4455555567799999999999766655543 3567999999965332211 1111 012479999999986642
Q ss_pred ----CC--CCCccE-EEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988 233 ----FA--SGFVDA-VHAGAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 233 ----~~--~~~fD~-V~~~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
.. ....+- +++-.+=|...+....++....++++|.
T Consensus 99 ~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGS 141 (206)
T ss_dssp HHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-
T ss_pred HHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCC
Confidence 11 112232 2233333333344455566666766665
No 277
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.19 E-value=0.07 Score=45.31 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHH----------HHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENM----------LRQCYDFIKQDNTILTSNLALVRADV 228 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~----------l~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (319)
.+....++.+|+|+=.|.|+|++-+... ++...|++.-+.+.. -..+++. ...|...+-.+.
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-------~~aN~e~~~~~~ 114 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-------VYANVEVIGKPL 114 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-------hhhhhhhhCCcc
Confidence 3446688999999999999999998877 565678777665431 1111111 133555555555
Q ss_pred CCCCCCCCCccEEEeccc---cc----CCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 229 CRLPFASGFVDAVHAGAA---LH----CWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 229 ~~lp~~~~~fD~V~~~~v---l~----h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..++ ..+..|+++.... +| |-....++.+++++.|||||...+..-
T Consensus 115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 5555 3456677665322 22 222346778899999999998887755
No 278
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=95.14 E-value=0.013 Score=35.73 Aligned_cols=34 Identities=18% Similarity=0.545 Sum_probs=22.3
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.+.||.|+..+...+. .+.. ....++|++|+++|
T Consensus 2 ~i~Cp~C~~~y~i~d~-~ip~---~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDE-KIPP---KGRKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHH-HCCC---CCcEEECCCCCCEe
Confidence 4689999996654332 1111 12468999999987
No 279
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.11 E-value=0.18 Score=45.72 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=71.2
Q ss_pred eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC--CCCccEEEeccc
Q 020988 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAA 246 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~v 246 (319)
+++|+-||.|.+...+.+.|. ..+.++|+++.+++..+.+... .++.+|+.++... ...+|+|+...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~---------~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPN---------KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCC---------CCccCccccCchhhcCCCCCEEEeCCC
Confidence 689999999999998988874 4688999999999888876521 1566788776532 357999997541
Q ss_pred cc---------CCCCH-HHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988 247 LH---------CWPSP-SNAASVFSSSYSLLSICYLLQFRYTKI 280 (319)
Q Consensus 247 l~---------h~~d~-~~~l~el~rvlk~g~~~g~~~~~~~~~ 280 (319)
-. ...|+ ..++.++.++++...|-.+++=.+..+
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~ 115 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGL 115 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcch
Confidence 11 12233 346777888888777776655544443
No 280
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=0.0048 Score=50.26 Aligned_cols=56 Identities=16% Similarity=-0.002 Sum_probs=45.0
Q ss_pred CeEEEEcCCCCCCCCCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 220 ~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+++++-.....+|.+++.|+|++.+|+||+.-. ..++++.+|+|||+|.+-+-+.
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 4555554455678999999999999999999744 3678999999999998877766
No 281
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=95.07 E-value=0.014 Score=35.08 Aligned_cols=30 Identities=37% Similarity=0.699 Sum_probs=16.0
Q ss_pred ccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
||.||++|....+.+. .+..+.|++||.+.
T Consensus 3 C~~CG~~l~~~ip~gd-----~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGD-----DRERLVCPACGFIH 32 (34)
T ss_dssp -TTT--B-EEE--TT------SS-EEEETTTTEEE
T ss_pred cccccChhhhhcCCCC-----CccceECCCCCCEE
Confidence 9999999876544222 23567899999763
No 282
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.91 E-value=0.073 Score=50.50 Aligned_cols=60 Identities=15% Similarity=0.403 Sum_probs=48.6
Q ss_pred eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
.|||||.|||.++..+.+.|. ..|++++.-..|.+.|++-..+++ ..++|.++.--..++
T Consensus 69 ~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng--~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNG--MSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCC--Cccceeeecccccee
Confidence 589999999999999999884 579999999999999999877654 567777766544443
No 283
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.90 E-value=0.46 Score=40.77 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=72.5
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCcc
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD 239 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD 239 (319)
+..++.+||=+|..+|....++++-.....++++++|+.+.+..-...++. +|+-=+.+|+.... .--+..|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhccccc
Confidence 457899999999999999999998865678999999998877666555443 57766778886532 1135689
Q ss_pred EEEecccccCCCCHH---HHHHHHHHhhcCCCeeEEEE
Q 020988 240 AVHAGAALHCWPSPS---NAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 240 ~V~~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~ 274 (319)
+|+.- +..|. -+...+...||++|...+.+
T Consensus 148 viy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 148 VIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 99763 33333 33456677888887554443
No 284
>PHA00626 hypothetical protein
Probab=94.88 E-value=0.018 Score=38.13 Aligned_cols=33 Identities=21% Similarity=0.572 Sum_probs=21.3
Q ss_pred eeccCCCcc-ccccCCCCCcccceecCceeeCccCCccc
Q 020988 61 FSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 61 l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
+.||.|++. ..+.+. . .-.+..+.|+.||+.|.
T Consensus 1 m~CP~CGS~~Ivrcg~--c---r~~snrYkCkdCGY~ft 34 (59)
T PHA00626 1 MSCPKCGSGNIAKEKT--M---RGWSDDYVCCDCGYNDS 34 (59)
T ss_pred CCCCCCCCceeeeece--e---cccCcceEcCCCCCeec
Confidence 369999994 443221 0 00136789999999983
No 285
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.65 E-value=0.063 Score=51.93 Aligned_cols=93 Identities=15% Similarity=0.087 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC-CCCCCCCCCccEEEe
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHA 243 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~ 243 (319)
.=..|+|..+|.|.|+.+|.+.. +--+|+-+ ..++.+....+|- -+-.. .|- +.++.-..+||+|++
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRG---------LIG~y-hDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRG---------LIGVY-HDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcc---------cchhc-cchhhccCCCCcchhheeh
Confidence 34579999999999999997752 11122222 2233333333320 01111 121 334544689999999
Q ss_pred cccccCCCC---HHHHHHHHHHhhcCCCe
Q 020988 244 GAALHCWPS---PSNAASVFSSSYSLLSI 269 (319)
Q Consensus 244 ~~vl~h~~d---~~~~l~el~rvlk~g~~ 269 (319)
.+++.+..+ .+..+-||.|+|+|+|.
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~ 462 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGW 462 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCce
Confidence 998887764 46778899999888764
No 286
>PHA01634 hypothetical protein
Probab=94.54 E-value=0.29 Score=38.78 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=41.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
..+.+|+|||.+-|.-+..++-.|. ..|+++++++...+..++..+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence 4689999999999999999988874 6899999999999999987754
No 287
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.47 E-value=0.2 Score=40.53 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=48.7
Q ss_pred eEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEEecccc-cC-----CCCHHHHHHHHHHh
Q 020988 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAAL-HC-----WPSPSNAASVFSSS 263 (319)
Q Consensus 192 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl-~h-----~~d~~~~l~el~rv 263 (319)
+|+|+|+-+++++..++++++.+ ...++.++..+=+++. .+++++|+|+.+... -. +..++..+..+...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 58999999999999999998864 3347999887655554 233589999886422 11 22345555555554
Q ss_pred hcCCCeeEEEEe
Q 020988 264 YSLLSICYLLQF 275 (319)
Q Consensus 264 lk~g~~~g~~~~ 275 (319)
++.+.++|++.+
T Consensus 79 l~lL~~gG~i~i 90 (140)
T PF06962_consen 79 LELLKPGGIITI 90 (140)
T ss_dssp HHHEEEEEEEEE
T ss_pred HHhhccCCEEEE
Confidence 444444444433
No 288
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=94.43 E-value=0.034 Score=33.17 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=23.8
Q ss_pred CeeeccCCCccccc-cCCCCCcccceecCceeeCccCCccc
Q 020988 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
++-.|+.|++++.. ... ++..|..||.+|+
T Consensus 2 ~~~~C~~C~~~~i~~~~~----------~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 2 NLKKCSKCGGNGIVNKED----------DYEVCIFCGSSFP 32 (33)
T ss_pred CceEcCCCCCCeEEEecC----------CeEEcccCCcEee
Confidence 35679999998766 443 7889999999885
No 289
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=0.026 Score=41.09 Aligned_cols=30 Identities=27% Similarity=0.704 Sum_probs=22.9
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+...||.|+.+-.... ..+++.|..||..|
T Consensus 34 ~~~~Cp~C~~~~VkR~---------a~GIW~C~kCg~~f 63 (89)
T COG1997 34 AKHVCPFCGRTTVKRI---------ATGIWKCRKCGAKF 63 (89)
T ss_pred cCCcCCCCCCcceeee---------ccCeEEcCCCCCee
Confidence 5689999999733222 24899999999988
No 290
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=94.29 E-value=0.026 Score=46.39 Aligned_cols=38 Identities=29% Similarity=0.597 Sum_probs=23.4
Q ss_pred eeccCCCccccc-cCCCCCccc-ceecCceeeCccCCcccc
Q 020988 61 FSCPICYEPLIR-KGPTGLTLG-AIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 61 l~CP~C~~~l~~-~~~~~~~~~-~i~~~~~~C~~Cg~~f~~ 99 (319)
+.||-|+++-.. ........+ .+. ...+|++||.+|..
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~-~~~~c~~c~~~f~~ 40 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIR-RRRECLACGKRFTT 40 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCcee-eeeeccccCCcceE
Confidence 479999986522 222222233 343 34899999999943
No 291
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.25 E-value=0.59 Score=41.55 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCC---CeEE--E-EcCCCCCCCCCCC-c
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS---NLAL--V-RADVCRLPFASGF-V 238 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~---~i~~--~-~~d~~~lp~~~~~-f 238 (319)
...+|||+|.|+|..+..++... ..+|+-.|+..-. .....+...++..... .+.+ + .++.....+..+. |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 35679999999997776666643 3488888875533 3322222221111111 2222 2 2222222222334 9
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
|+|++..++.+...++.++.-+..++...+
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~ 193 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDG 193 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCC
Confidence 999999999998888888888888877777
No 292
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=94.20 E-value=0.026 Score=36.59 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=24.4
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCc--cCCccccCC
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSKD 101 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~--Cg~~f~~~~ 101 (319)
.||.||+.........+ ...+...+..|.| ||+.|....
T Consensus 1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~ 41 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANL 41 (47)
T ss_pred CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEE
Confidence 59999996533322112 2233446889999 999995443
No 293
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=94.15 E-value=0.027 Score=34.29 Aligned_cols=27 Identities=19% Similarity=0.554 Sum_probs=21.2
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
-..|++|++.+....+ +.+.|..|||+
T Consensus 8 ~~~C~~C~~~~~~~~d----------G~~yC~~cG~~ 34 (36)
T PF11781_consen 8 NEPCPVCGSRWFYSDD----------GFYYCDRCGHQ 34 (36)
T ss_pred CCcCCCCCCeEeEccC----------CEEEhhhCceE
Confidence 3569999998555543 78999999986
No 294
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.03 E-value=0.088 Score=48.66 Aligned_cols=114 Identities=15% Similarity=0.035 Sum_probs=64.4
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC----CCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLP 232 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp 232 (319)
+....+...+.+|||+|.|.|.-+.++....|. ..++-++.|+..-+........- ......+...|+ ..+|
T Consensus 105 L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 105 LQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred HHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccCCC
Confidence 333334456788999999999876666555442 36788888887666655433221 111122222233 2333
Q ss_pred CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
. ...|++|+..+-|-|..+.....-.+.+++....++|.+++
T Consensus 182 ~-ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 182 A-ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred c-cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 2 35678887777666665555444445555554555555555
No 295
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=93.95 E-value=0.029 Score=34.51 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=21.7
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
.+.||.|+..+..... .+.. ....++|++|++.|.
T Consensus 2 ~~~CP~C~~~~~v~~~-~~~~---~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDS-QLGA---NGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHH-HcCC---CCCEEECCCCCCEEE
Confidence 3689999996544321 0000 013589999999873
No 296
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=93.91 E-value=0.026 Score=35.07 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=18.1
Q ss_pred eeccCCCccccc-cCCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+.||.|+..-.. ........++-..-.+.|.+|||.|
T Consensus 1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 469999983110 0111112222233578999999987
No 297
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=93.90 E-value=0.039 Score=36.29 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=22.8
Q ss_pred ccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.+....--||.|++.+.... .+.+.|..||.++
T Consensus 15 ~v~~~~~fCP~Cg~~~m~~~----------~~r~~C~~Cgyt~ 47 (50)
T PRK00432 15 KVKRKNKFCPRCGSGFMAEH----------LDRWHCGKCGYTE 47 (50)
T ss_pred EEEEccCcCcCCCcchhecc----------CCcEECCCcCCEE
Confidence 34445557999998633222 2678999999876
No 298
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=93.86 E-value=0.035 Score=35.22 Aligned_cols=29 Identities=28% Similarity=0.592 Sum_probs=19.1
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+.||.|++.....+. .++.+.|++||.+-
T Consensus 1 m~Cp~Cg~~~~~~D~--------~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 1 MKCPNCGSKEIVFDP--------ERGELVCPNCGLVL 29 (43)
T ss_dssp ESBTTTSSSEEEEET--------TTTEEEETTT-BBE
T ss_pred CCCcCCcCCceEEcC--------CCCeEECCCCCCEe
Confidence 579999996422221 13678999999864
No 299
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=93.75 E-value=0.049 Score=32.19 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=15.4
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
-||.||++...... ....+|+.||+.+
T Consensus 5 fC~~CG~~t~~~~~---------g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG---------GWARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-SS---------SS-EEESSSS-EE
T ss_pred ccCcCCccccCCCC---------cCEeECCCCcCEe
Confidence 49999998766543 2467899999864
No 300
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=0.031 Score=42.91 Aligned_cols=26 Identities=8% Similarity=0.363 Sum_probs=22.4
Q ss_pred eecCceeeCccCCccccCCceeeecc
Q 020988 83 IYRSGFKCRKCDKTYSSKDNYLDLTV 108 (319)
Q Consensus 83 i~~~~~~C~~Cg~~f~~~~g~~~~~~ 108 (319)
+..+.+.|++||+.|++.+|+++.+-
T Consensus 94 v~EG~l~CpetG~vfpI~~GIPNMLL 119 (124)
T KOG1088|consen 94 VIEGELVCPETGRVFPISDGIPNMLL 119 (124)
T ss_pred hccceEecCCCCcEeecccCCccccc
Confidence 34478999999999999999999873
No 301
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.67 E-value=0.42 Score=44.59 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=73.8
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-CCCCccEEEecc
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGA 245 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~ 245 (319)
..+|||.=+|+|.=+..++...+..+|+.-|+|+.+++..+++++.+ ...+...+..|+..+=. ....||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~ID--- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVID--- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEe---
Confidence 68999999999988877777766668999999999999999998764 13344555556544321 136899883
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
|.-+..|..++....+.++.+|..++-
T Consensus 127 -iDPFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 127 -IDPFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred -cCCCCCCchHHHHHHHHhhcCCEEEEE
Confidence 445556778888888887777766654
No 302
>PRK10220 hypothetical protein; Provisional
Probab=93.64 E-value=0.05 Score=41.33 Aligned_cols=31 Identities=19% Similarity=0.574 Sum_probs=24.9
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
+-.||.|++....... ..+.|+.|+|.|...
T Consensus 3 lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 3 LPHCPKCNSEYTYEDN----------GMYICPECAHEWNDA 33 (111)
T ss_pred CCcCCCCCCcceEcCC----------CeEECCcccCcCCcc
Confidence 4579999998876654 678999999999544
No 303
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=93.62 E-value=0.041 Score=41.82 Aligned_cols=31 Identities=19% Similarity=0.501 Sum_probs=24.7
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
+-.||.|++....... ..+.|+.|+|.|...
T Consensus 2 lp~CP~C~seytY~dg----------~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 2 LPPCPKCNSEYTYHDG----------TQLICPSCLYEWNEN 32 (109)
T ss_pred CCcCCcCCCcceEecC----------CeeECcccccccccc
Confidence 3579999998876653 678999999999543
No 304
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=93.46 E-value=0.072 Score=34.31 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=22.3
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.+.||.||..+..... ...++|+.||..+
T Consensus 3 ~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~ 31 (46)
T PRK00398 3 EYKCARCGREVELDEY---------GTGVRCPYCGYRI 31 (46)
T ss_pred EEECCCCCCEEEECCC---------CCceECCCCCCeE
Confidence 5899999998766542 1268999999876
No 305
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.3 Score=45.49 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=40.2
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhC--------CCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSG--------TYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g--------~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
.+.+-.++|+|.|+|.++..+.+.. ...++.-|++|++..+.-+++++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3445689999999999988887652 256899999999999988888865
No 306
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.42 E-value=1 Score=42.66 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=66.4
Q ss_pred hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C-----CC-
Q 020988 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PF- 233 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-----p~- 233 (319)
....++.+||.+|||. |..+..+++.....+++++|.+++..+.+++.. ...++...-.+ + .+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELT 250 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHc
Confidence 3456788999999987 888888888754336999999999988888742 11222211111 1 11
Q ss_pred CCCCccEEEeccc---------------ccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 234 ASGFVDAVHAGAA---------------LHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 234 ~~~~fD~V~~~~v---------------l~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
....+|+|+-.-. +.-..++...+.++.+.+++++..-.+
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 2346898877421 111245566788899999888765444
No 307
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.39 E-value=1 Score=42.27 Aligned_cols=96 Identities=21% Similarity=0.132 Sum_probs=66.2
Q ss_pred cCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC------CCCCC-C
Q 020988 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------LPFAS-G 236 (319)
Q Consensus 165 ~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~------lp~~~-~ 236 (319)
.++++|+=+|||. |.++..+++.....+|+.+|.+++-++.|++.... +.+.....+ ..... .
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCC
Confidence 3455999999997 77777788776667999999999999999985422 222222111 01112 3
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+|+|+-.-. . ..++.++.++++++|....+-.
T Consensus 238 g~D~vie~~G-----~-~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 238 GADVVIEAVG-----S-PPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CCCEEEECCC-----C-HHHHHHHHHHhcCCCEEEEEec
Confidence 6999976444 2 3367888899999988776655
No 308
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.24 E-value=0.17 Score=43.74 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=34.5
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHh
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIK 211 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~ 211 (319)
....+-++.|-.||.|+++--+.-.. .-..|+|.|+++++++.|++++.
T Consensus 48 ~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 48 EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 34456789999999999876554332 23479999999999999998763
No 309
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.16 E-value=0.42 Score=41.83 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=62.4
Q ss_pred CCcHHHHHHHHHHhhcc------CCCeEEEEcCCcChHHH--HHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCC
Q 020988 149 PGPDEEFKMAQEYFKSA------QGGLLVDVSCGSGLFSR--KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN 220 (319)
Q Consensus 149 ~~~~~~~~~l~~~l~~~------~~~~VLDiGcG~G~~~~--~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 220 (319)
|+.......+.++|... ++-++||||.|.--.-- -..+.|+ +.+|.|+++..++.|+..+..+ +.....
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N-~~l~~~ 131 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISAN-PGLERA 131 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcC-cchhhh
Confidence 44444466666776432 45578999988653221 1233456 9999999999999999988663 222334
Q ss_pred eEEEEcCCCC-----CCCCCCCccEEEecccccCC
Q 020988 221 LALVRADVCR-----LPFASGFVDAVHAGAALHCW 250 (319)
Q Consensus 221 i~~~~~d~~~-----lp~~~~~fD~V~~~~vl~h~ 250 (319)
+++....-.+ +--.++.||+++|+--+|..
T Consensus 132 I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 132 IRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred eeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 5554432111 12237899999998877743
No 310
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.13 E-value=0.056 Score=35.90 Aligned_cols=26 Identities=23% Similarity=0.686 Sum_probs=21.7
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
-+|++|+.++...+ .++.|+.||..|
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~Cgapy 31 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPY 31 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCcc
Confidence 46999999887665 678999999887
No 311
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=93.02 E-value=0.057 Score=33.72 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=21.2
Q ss_pred eeccCCCccccc-cCCCCCcccceecCceeeCccCCccc
Q 020988 61 FSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 61 l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
..||.|+..-.. ......+.++-+.-.+.|.+||+.|.
T Consensus 1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~ 39 (40)
T smart00440 1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWR 39 (40)
T ss_pred CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeC
Confidence 369999973211 00111222223335789999999873
No 312
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.00 E-value=0.18 Score=43.93 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=65.5
Q ss_pred CeEEEEcCCcChHHHHHHhhCCC---------CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------ 232 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~---------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------ 232 (319)
.+++|+.+..|.|+..+.+.... ..+++||+-+ |. ..+++.-+++|++...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------------PI~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------------PIEGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------------ccCceEEeecccCCHhHHHHHH
Confidence 68999999999999988877321 1399999854 11 3467888999998753
Q ss_pred --CCCCCccEEEecc-----cccCCCCHH------HHHHHHHHhhcCCCeeEEEEeecc
Q 020988 233 --FASGFVDAVHAGA-----ALHCWPSPS------NAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 233 --~~~~~fD~V~~~~-----vl~h~~d~~------~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
|..++.|+|+|-+ .+|.+..-. .++.-...+||+||.+---+|...
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 6677999999966 344332111 223334557888887766666433
No 313
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=0.043 Score=45.14 Aligned_cols=41 Identities=24% Similarity=0.493 Sum_probs=25.2
Q ss_pred ccCeeeccCCCccccccCCCC---Cccc---ceecCceeeCccCCcc
Q 020988 57 EGDLFSCPICYEPLIRKGPTG---LTLG---AIYRSGFKCRKCDKTY 97 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~---~~~~---~i~~~~~~C~~Cg~~f 97 (319)
....-+||.|+++|....... ..+. ......++|++||..|
T Consensus 94 ~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 94 FPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred ccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 456889999999875432111 0111 1122467899999988
No 314
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.86 E-value=1.2 Score=43.88 Aligned_cols=101 Identities=20% Similarity=0.138 Sum_probs=67.0
Q ss_pred ccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-----------C
Q 020988 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------L 231 (319)
Q Consensus 164 ~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-----------l 231 (319)
..++.+|+=+|+|. |..+...++.. ..+|+++|.+++.++.+++. +.+++..|..+ +
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence 35789999999996 77776666663 23899999999999888873 33333222211 0
Q ss_pred C----------CCC--CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 P----------FAS--GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 p----------~~~--~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
. +.+ ..+|+|+.......-+.|....+++.+.+|+++....+-.
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 011 3699999877665544554445888899998887555433
No 315
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=92.81 E-value=0.11 Score=47.82 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=65.2
Q ss_pred cHHHHHHH-HHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHH-------HHHHHhhcCccCCCCeE
Q 020988 151 PDEEFKMA-QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-------CYDFIKQDNTILTSNLA 222 (319)
Q Consensus 151 ~~~~~~~l-~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~-------a~~~~~~~~~~~~~~i~ 222 (319)
.+.+...+ .......+|..|+|-=.|||.++...+.-|. -|+|.|++-.+++. .+.++++.+. ...-+.
T Consensus 192 mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fld 268 (421)
T KOG2671|consen 192 MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLD 268 (421)
T ss_pred cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCC-cchhhh
Confidence 34443333 3334457899999999999999988888776 99999999998873 3445555421 123467
Q ss_pred EEEcCCCCCCCC-CCCccEEEe
Q 020988 223 LVRADVCRLPFA-SGFVDAVHA 243 (319)
Q Consensus 223 ~~~~d~~~lp~~-~~~fD~V~~ 243 (319)
++.+|...-|+. +..||+|+|
T Consensus 269 vl~~D~sn~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 269 VLTADFSNPPLRSNLKFDAIVC 290 (421)
T ss_pred eeeecccCcchhhcceeeEEEe
Confidence 888999887764 578999998
No 316
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=92.58 E-value=0.055 Score=41.90 Aligned_cols=22 Identities=32% Similarity=0.899 Sum_probs=18.5
Q ss_pred ccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
||+|+++|... .+.|++|+-..
T Consensus 1 CPvCg~~l~vt-------------~l~C~~C~t~i 22 (113)
T PF09862_consen 1 CPVCGGELVVT-------------RLKCPSCGTEI 22 (113)
T ss_pred CCCCCCceEEE-------------EEEcCCCCCEE
Confidence 99999998754 47999999865
No 317
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.45 E-value=0.7 Score=45.09 Aligned_cols=103 Identities=7% Similarity=-0.019 Sum_probs=70.8
Q ss_pred CCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 167 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
...|+-+|+|.|-+.....+. ....++++++-+|+++-....+--+. ...+++++..|+..++.+.++.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~---W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC---WDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh---hcCeeEEEeccccccCCchhhccchH
Confidence 346888999999877665543 23467899999999987766532222 46789999999999985568899988
Q ss_pred ec--ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AG--AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~--~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+- +.+..-.=-.+.+.-+.+.||+. |+.+.
T Consensus 445 SELLGSFGDNELSPECLDG~q~fLkpd---gIsIP 476 (649)
T KOG0822|consen 445 SELLGSFGDNELSPECLDGAQKFLKPD---GISIP 476 (649)
T ss_pred HHhhccccCccCCHHHHHHHHhhcCCC---ceEcc
Confidence 62 23222211235677777777776 45554
No 318
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=92.39 E-value=0.091 Score=30.06 Aligned_cols=22 Identities=27% Similarity=0.848 Sum_probs=11.6
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK 92 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~ 92 (319)
.||+|++++.+... ...++|.+
T Consensus 1 ~CP~C~s~l~~~~~---------ev~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREEG---------EVDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-CC---------TTCEEE--
T ss_pred CcCCCCCEeEcCCC---------CEeEECCC
Confidence 59999999986553 24678876
No 319
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.24 E-value=6.1 Score=34.93 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=45.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC-CCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~V~ 242 (319)
..|++||=+|=.-- .+..++-.+...+|+.+|+++..++..++..++.+ -+++.+..|+.+ +|- -.++||+++
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----l~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----LPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC----CceEEEEecccccCCHHHhcCCCEEE
Confidence 46899999995543 33444444556799999999999999998887763 348889999866 341 247999998
Q ss_pred ec
Q 020988 243 AG 244 (319)
Q Consensus 243 ~~ 244 (319)
.-
T Consensus 118 TD 119 (243)
T PF01861_consen 118 TD 119 (243)
T ss_dssp E-
T ss_pred eC
Confidence 73
No 320
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=92.22 E-value=0.07 Score=29.01 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=16.3
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
.||.||..+... ...|++||+.
T Consensus 1 ~Cp~CG~~~~~~-------------~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDD-------------AKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCc-------------CcchhhhCCc
Confidence 499999977532 3479999974
No 321
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=92.20 E-value=0.14 Score=33.68 Aligned_cols=34 Identities=32% Similarity=0.588 Sum_probs=23.3
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
-||.||+.|...... ....+.|+.||+.+.....
T Consensus 2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence 499999977554320 0136889999998865544
No 322
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.16 E-value=1.6 Score=40.80 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=75.8
Q ss_pred HhhccCCCeEEEEcCCcChHHHHHHhhCCCC----eEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----
Q 020988 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS----GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---- 232 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~----~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---- 232 (319)
.+...++.+|||..+..|.=+.++.+..... .|++=|.+..-+......++.. ...++.+...|+...|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---~~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---PSPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---CCcceeeecccceecccccc
Confidence 3456799999999999999998888875433 7999999998777777666443 2344545444544333
Q ss_pred -----CCCCCccEEEec------ccccCCCCHH--------------HHHHHHHHhhcCCCeeEEEEee
Q 020988 233 -----FASGFVDAVHAG------AALHCWPSPS--------------NAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 233 -----~~~~~fD~V~~~------~vl~h~~d~~--------------~~l~el~rvlk~g~~~g~~~~~ 276 (319)
.....||-|++- .++.+.++.. -.++-+.|-++.++++|.++++
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 233578998862 2555544432 1245567777778888888883
No 323
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=92.15 E-value=0.088 Score=36.94 Aligned_cols=26 Identities=35% Similarity=0.945 Sum_probs=17.2
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+.||.|+++|.+.+ +.+.|..|+..|
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~ 27 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDY 27 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred CcCCCCCCccEEeC-----------CEEECccccccc
Confidence 47999999988765 567888888877
No 324
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.15 E-value=0.041 Score=42.80 Aligned_cols=44 Identities=23% Similarity=0.505 Sum_probs=27.1
Q ss_pred cCeeeccCCCcccccc--CCCCCcccceecCceeeCccCCccccCC
Q 020988 58 GDLFSCPICYEPLIRK--GPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~--~~~~~~~~~i~~~~~~C~~Cg~~f~~~~ 101 (319)
+.+++||+|..++.-. ....+..+.-+.-.-.|.+||..||..+
T Consensus 37 ati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte 82 (160)
T COG4306 37 ATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE 82 (160)
T ss_pred HHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence 4688999999865321 1112223333334568999999997653
No 325
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=92.12 E-value=0.075 Score=39.27 Aligned_cols=30 Identities=27% Similarity=0.821 Sum_probs=21.7
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+.||.|+..-.... ..+++.|..|+..|
T Consensus 34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~ 63 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKF 63 (90)
T ss_dssp S-BEESSSSSSEEEEE---------ETTEEEETTTTEEE
T ss_pred CCCcCCCCCCceeEEe---------eeEEeecCCCCCEE
Confidence 3578999999543322 13789999999887
No 326
>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]
Probab=92.12 E-value=0.12 Score=39.12 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=29.4
Q ss_pred ccccccc-CeeeccCCCcc--ccccCCCCCcccceecCceeeCccCCccc
Q 020988 52 QTLELEG-DLFSCPICYEP--LIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 52 ~~~~~~~-~~l~CP~C~~~--l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
++++++. ..-.||.|+.. +.... .+...+.-++-++.|.+|+|.|.
T Consensus 64 ~DPTLPrts~~~C~~C~~~eavffQ~-~~~r~d~~m~l~yvC~~C~h~wt 112 (113)
T KOG2691|consen 64 SDPTLPRTSDKHCPKCGHREAVFFQA-QTRRADEAMRLFYVCCSCGHRWT 112 (113)
T ss_pred cCCCcCccccccCCccCCcceEEEec-ccccccceEEEEEEecccccccc
Confidence 5678887 77889999972 32221 12222333445778999999873
No 327
>PF14353 CpXC: CpXC protein
Probab=92.10 E-value=0.064 Score=42.69 Aligned_cols=40 Identities=20% Similarity=0.459 Sum_probs=22.8
Q ss_pred eeccCCCccccccCCCCCcc-------cceec---CceeeCccCCccccC
Q 020988 61 FSCPICYEPLIRKGPTGLTL-------GAIYR---SGFKCRKCDKTYSSK 100 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~-------~~i~~---~~~~C~~Cg~~f~~~ 100 (319)
++||.|+..........++. ..|.. ..+.|++||+.+...
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 58999998543322211111 11111 266899999999543
No 328
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=91.90 E-value=0.91 Score=38.38 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=57.0
Q ss_pred HHHHHHhhccCCC-eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988 156 KMAQEYFKSAQGG-LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (319)
Q Consensus 156 ~~l~~~l~~~~~~-~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (319)
+.+.+.+...++. .|+.+|||.=.....+....+...++-+|. |++++.-++.++..+.....+.+++.+|+.+..
T Consensus 67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~ 145 (183)
T PF04072_consen 67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWI 145 (183)
T ss_dssp HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHH
T ss_pred HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhH
Confidence 5566666554555 999999999888777777544567888887 445655555554431111123567889987622
Q ss_pred -------CCCCCccEEEecccccCCCCHHH
Q 020988 233 -------FASGFVDAVHAGAALHCWPSPSN 255 (319)
Q Consensus 233 -------~~~~~fD~V~~~~vl~h~~d~~~ 255 (319)
+....--++++-+++.++ +++.
T Consensus 146 ~~L~~~g~~~~~ptl~i~Egvl~Yl-~~~~ 174 (183)
T PF04072_consen 146 DALPKAGFDPDRPTLFIAEGVLMYL-SPEQ 174 (183)
T ss_dssp HHHHHCTT-TTSEEEEEEESSGGGS--HHH
T ss_pred HHHHHhCCCCCCCeEEEEcchhhcC-CHHH
Confidence 223445567777788888 4444
No 329
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=91.84 E-value=0.15 Score=32.59 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=21.7
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.+.|..||..+.... ....+|+.||+.-
T Consensus 2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rI 29 (44)
T smart00659 2 IYICGECGRENEIKS----------KDVVRCRECGYRI 29 (44)
T ss_pred EEECCCCCCEeecCC----------CCceECCCCCceE
Confidence 478999999766543 2678999999965
No 330
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=91.64 E-value=0.12 Score=32.35 Aligned_cols=23 Identities=35% Similarity=0.860 Sum_probs=18.2
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccC
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD 94 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg 94 (319)
.||.|+.||.+... +...|..|+
T Consensus 19 ~Cp~C~~PL~~~k~----------g~~~Cv~C~ 41 (41)
T PF06677_consen 19 HCPDCGTPLMRDKD----------GKIYCVSCG 41 (41)
T ss_pred ccCCCCCeeEEecC----------CCEECCCCC
Confidence 59999999988432 567899985
No 331
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.56 E-value=0.66 Score=47.58 Aligned_cols=94 Identities=10% Similarity=0.020 Sum_probs=55.7
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHH-HHHHhhcCccCCCCeEEEEcCC---CCCCCCCCCccEEEe
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVHA 243 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a-~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~V~~ 243 (319)
..+--.|.||=.....+.+..|..+++-+|-+...-+.+ +..+.+. ....++++.|.- ..+.|++=+-=.|+.
T Consensus 484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~---~~ge~dILiGTQmiaKG~~fp~vtLVgvl~ 560 (730)
T COG1198 484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQF---ANGEADILIGTQMIAKGHDFPNVTLVGVLD 560 (730)
T ss_pred CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHH---hCCCCCeeecchhhhcCCCcccceEEEEEe
Confidence 357777888888889999999989999999877654432 2222222 123455555421 223454433344555
Q ss_pred cccccCCCCH---HHHHHHHHHhh
Q 020988 244 GAALHCWPSP---SNAASVFSSSY 264 (319)
Q Consensus 244 ~~vl~h~~d~---~~~l~el~rvl 264 (319)
.+..-+.+|. ++.++.+..+.
T Consensus 561 aD~~L~~~DfRA~Er~fqll~Qva 584 (730)
T COG1198 561 ADTGLGSPDFRASERTFQLLMQVA 584 (730)
T ss_pred chhhhcCCCcchHHHHHHHHHHHH
Confidence 5566666664 45555555544
No 332
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.49 E-value=1.3 Score=37.67 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=63.8
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHh----hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~----~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
.-.+++++-..++..|+|+|.-.|.-+..++. .|-..+|+++|++-..+.-+..+ .+++.|+.++-.+
T Consensus 58 ~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~d 129 (237)
T COG3510 58 MWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTD 129 (237)
T ss_pred HHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCC
Confidence 34445566566778999999998865555444 35446999999987665544432 3689999998876
Q ss_pred CC-------CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988 231 LP-------FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 231 lp-------~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
.. ..++.--+.++..+-||....-..++.+.+++..|.
T Consensus 130 pai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~ 174 (237)
T COG3510 130 PAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGD 174 (237)
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCc
Confidence 43 122333344444555555333333333444444443
No 333
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.33 E-value=1.4 Score=41.04 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=61.8
Q ss_pred hccCCCeEEEEcCC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCCCCCCCccE
Q 020988 163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA 240 (319)
Q Consensus 163 ~~~~~~~VLDiGcG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~ 240 (319)
...|+.+|+=+|+| .|..+.++++... .+|+++|.+++-.+.|++.-.. .++.. |....+--.+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd---------~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD---------HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc---------EEEEcCCchhhHHhHhhCcE
Confidence 35689999999988 3557777777432 5999999999999999885321 23332 22222211234999
Q ss_pred EEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
|+..-. ...+....+.|+++|..-.+-
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEEC
Confidence 987544 334666777778777665543
No 334
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=90.95 E-value=0.17 Score=41.35 Aligned_cols=40 Identities=25% Similarity=0.491 Sum_probs=25.0
Q ss_pred CeeeccCCCccccccCCCC---Cccccee---cCceeeCccCCccc
Q 020988 59 DLFSCPICYEPLIRKGPTG---LTLGAIY---RSGFKCRKCDKTYS 98 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~---~~~~~i~---~~~~~C~~Cg~~f~ 98 (319)
.+-+||.|+++|....... ..+..+. ...++|+.||+.|-
T Consensus 90 ~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW 135 (147)
T PF01927_consen 90 IFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW 135 (147)
T ss_pred CCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence 3678999999775432211 1122222 23789999999983
No 335
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=90.86 E-value=0.19 Score=29.66 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=18.5
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+.|..|+........ ...+|+.||+.-
T Consensus 1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPG----------DPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTS----------STSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCC----------CcEECCcCCCeE
Confidence 468999997665432 567999999864
No 336
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=90.72 E-value=0.54 Score=41.40 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=63.9
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHH----HHHHHHHHhhcCccCCCCeEEEEcCCCCCC---C
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENM----LRQCYDFIKQDNTILTSNLALVRADVCRLP---F 233 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~----l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~ 233 (319)
++.+++.+||=+|+++|.......+. ++..-|++++.|+.. +..|+++ +|+--+.-|+.... .
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------tNiiPIiEDArhP~KYRm 222 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------TNIIPIIEDARHPAKYRM 222 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------CCceeeeccCCCchheee
Confidence 35678999999999999998888877 677789999998754 4444443 46666666775521 1
Q ss_pred CCCCccEEEecccccCCCCHH--HHHH-HHHHhhcCCCeeEEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPS--NAAS-VFSSSYSLLSICYLL 273 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~--~~l~-el~rvlk~g~~~g~~ 273 (319)
.-.-.|+|++- ++.|+ +.+. ..+-.||+++-+-+-
T Consensus 223 lVgmVDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 223 LVGMVDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeEEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 12467777663 43443 3322 344477777654433
No 337
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=90.57 E-value=0.13 Score=34.66 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=20.5
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
..-.|.||-||+..+..-..-... ...++|++||..
T Consensus 24 ~~v~F~CPnCGe~~I~Rc~~CRk~----g~~Y~Cp~CGF~ 59 (61)
T COG2888 24 TAVKFPCPNCGEVEIYRCAKCRKL----GNPYRCPKCGFE 59 (61)
T ss_pred ceeEeeCCCCCceeeehhhhHHHc----CCceECCCcCcc
Confidence 446788999996443311101111 256789999864
No 338
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=90.47 E-value=0.92 Score=43.06 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCccEEEe
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA 243 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~ 243 (319)
.+-++||.=+|+|.=+...+.. ....+|+.-|+|+++++..+++++-++... ..+.+...|+..+ ....+.||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhhhccccCCEEEe
Confidence 3468999999999866666665 334589999999999999999987764221 1577888887653 234678999943
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
.-+..|..++....+.++.+|..+
T Consensus 128 ----DPfGSp~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 128 ----DPFGSPAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEE
T ss_pred ----CCCCCccHhHHHHHHHhhcCCEEE
Confidence 445567788887777776665443
No 339
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=90.43 E-value=1.2 Score=42.32 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=60.1
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCC
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF 237 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~ 237 (319)
+.++++.+|||..+..|.=+.+++..- -...|++.|.+.+-++..+.++...| ..+..+...|..++| ++. +
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence 356789999999999987666655542 23489999999999999999988764 566667777887665 443 8
Q ss_pred ccEEEe
Q 020988 238 VDAVHA 243 (319)
Q Consensus 238 fD~V~~ 243 (319)
||-|+.
T Consensus 313 fDRVLL 318 (460)
T KOG1122|consen 313 FDRVLL 318 (460)
T ss_pred cceeee
Confidence 999985
No 340
>PTZ00357 methyltransferase; Provisional
Probab=90.39 E-value=2.3 Score=43.06 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=62.8
Q ss_pred eEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhh-cCccC-----CCCeEEEEcCCCCCCCCC---
Q 020988 169 LLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQ-DNTIL-----TSNLALVRADVCRLPFAS--- 235 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~-----~~~i~~~~~d~~~lp~~~--- 235 (319)
.|+-+|+|-|-+.....+. +-..+|++||-++..+.....+... ..+.. ...|+++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999877665544 4456899999997655444443211 11111 345899999999874321
Q ss_pred --------CCccEEEe--cccccCCCCHHHHHHHHHHhhcC
Q 020988 236 --------GFVDAVHA--GAALHCWPSPSNAASVFSSSYSL 266 (319)
Q Consensus 236 --------~~fD~V~~--~~vl~h~~d~~~~l~el~rvlk~ 266 (319)
+.+|+|++ .+++-.-.=-.+.|.-+.+.||+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 37999987 33443222223567778888775
No 341
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=90.22 E-value=0.14 Score=28.72 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=16.7
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
..||.|+..+.. +...|++||..
T Consensus 3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDP-------------DAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCc-------------ccccChhhCCC
Confidence 469999995432 34589999974
No 342
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.19 E-value=2.2 Score=33.10 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=57.9
Q ss_pred cCCCeEEEEcCCcCh-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEE
Q 020988 165 AQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~ 242 (319)
...++|+|||-|.=. .+..+++.|. .++++|+.+. .| ..+++++..|+.+.... =...|+|+
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIY 75 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIY 75 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCcccee
Confidence 345699999988654 5667777776 9999999885 11 24788999999875421 13467777
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+ +.-|.++...+.++.+..+....+
T Consensus 76 S------iRpppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 76 S------IRPPPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred e------cCCCHHHHHHHHHHHHhhCCCEEE
Confidence 6 334455566666666665554443
No 343
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.18 E-value=6 Score=39.13 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=21.9
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCH
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE 200 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~ 200 (319)
..+--.|-|+=.....+.+..|...|..+|-+.
T Consensus 262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred CeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence 345556677777777777776666777777643
No 344
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=90.07 E-value=0.19 Score=42.53 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=27.4
Q ss_pred ccccCeeeccCCCccccccCC--CCCcccceecCceeeCccCCcc
Q 020988 55 ELEGDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~--~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
......+.||+|++.|..+.. ..=..+.+......|.+||..+
T Consensus 9 ~~~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~ 53 (201)
T COG1779 9 EEFETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRS 53 (201)
T ss_pred eeeeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcc
Confidence 344567889999996533211 0112344555678999999887
No 345
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=89.40 E-value=0.22 Score=38.43 Aligned_cols=30 Identities=20% Similarity=0.614 Sum_probs=20.9
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
-.||.||..+.--+ +.-..|+.||..|+..
T Consensus 10 R~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence 36999999653222 1345799999999544
No 346
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.26 E-value=0.2 Score=35.64 Aligned_cols=37 Identities=22% Similarity=0.548 Sum_probs=25.5
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCce
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNY 103 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~ 103 (319)
++.||+|+-.|.....+++ .+-.|+.|+-++..+...
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGEL 37 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGEL 37 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchhH
Confidence 4789999998765543222 345799999998655443
No 347
>PRK05580 primosome assembly protein PriA; Validated
Probab=89.15 E-value=6.7 Score=40.33 Aligned_cols=29 Identities=21% Similarity=0.543 Sum_probs=20.2
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
...||.|+.+|..+.. .+.+.|..||+..
T Consensus 390 ~~~C~~C~~~l~~h~~---------~~~l~Ch~Cg~~~ 418 (679)
T PRK05580 390 VAECPHCDASLTLHRF---------QRRLRCHHCGYQE 418 (679)
T ss_pred ccCCCCCCCceeEECC---------CCeEECCCCcCCC
Confidence 4567777777766542 3678899999865
No 348
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.08 E-value=2.2 Score=43.64 Aligned_cols=97 Identities=14% Similarity=0.001 Sum_probs=56.8
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc-
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA- 245 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~- 245 (319)
+..+.-.|-|+-.....+.+..|...|.-+|-+. .++ .+. ....++.+.-...|...+.+.+|...+
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~----~~~-------~~~~IlVGTqgaepm~~g~~~lV~ilda 497 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVD----TVD-------AGPALVVATPGAEPRVEGGYGAALLLDA 497 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHH----hhc-------cCCCEEEECCCCcccccCCceEEEEEcc
Confidence 3457778888888888888888888888888542 222 221 245566665322333335677776544
Q ss_pred -cccCCCC---HHHHHHHHHHhh---cCCCeeEEEEe
Q 020988 246 -ALHCWPS---PSNAASVFSSSY---SLLSICYLLQF 275 (319)
Q Consensus 246 -vl~h~~d---~~~~l~el~rvl---k~g~~~g~~~~ 275 (319)
.+-+.+| .+++++.+.++. +++...|.+++
T Consensus 498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~i 534 (665)
T PRK14873 498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVV 534 (665)
T ss_pred hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 2333444 456666666654 34444555555
No 349
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=89.07 E-value=0.21 Score=36.93 Aligned_cols=30 Identities=23% Similarity=0.712 Sum_probs=22.0
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+.||.|+..-..... .+++.|..|+..|
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 64 (90)
T PTZ00255 35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTV 64 (90)
T ss_pred CCccCCCCCCCceeeee---------eEEEEcCCCCCEE
Confidence 45789999975333221 2789999999987
No 350
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=89.02 E-value=0.42 Score=31.63 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=20.6
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
-+.||+||+.-......+.. +..-.+.|+.|.+...
T Consensus 4 Wi~CP~CgnKTR~kir~DT~---LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 4 WILCPICGNKTRLKIREDTV---LKNFPLYCPKCKQETL 39 (55)
T ss_pred EEECCCCCCccceeeecCce---eccccccCCCCCceEE
Confidence 46799999842221111111 1123579999999773
No 351
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=89.01 E-value=0.21 Score=47.38 Aligned_cols=30 Identities=30% Similarity=0.748 Sum_probs=24.4
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCccccCC
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~ 101 (319)
.||.||..+...+. +.++|+.||..++...
T Consensus 352 ~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 352 VCPRCGGRMKSAGR----------NGFRCKKCGTRARETL 381 (421)
T ss_pred CCCccCCchhhcCC----------CCcccccccccCCccc
Confidence 79999998877663 4899999999985543
No 352
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=88.95 E-value=0.32 Score=26.67 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=15.3
Q ss_pred ccCCCccccccCCCCCcccceecCceeeCccCC
Q 020988 63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 63 CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
|-.|+..+...+. ...+.|++||.
T Consensus 1 C~sC~~~i~~r~~---------~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQ---------AVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCccc---------CceEeCCCCCC
Confidence 5667776654431 25678999984
No 353
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=88.87 E-value=0.24 Score=29.90 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=19.6
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
.-||.|++-|...+... ....|++|+..+++.
T Consensus 2 ~FCp~C~nlL~p~~~~~--------~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 2 RFCPECGNLLYPKEDKE--------KRVACRTCGYEEPIS 33 (35)
T ss_dssp -BETTTTSBEEEEEETT--------TTEEESSSS-EEE-S
T ss_pred eeCCCCCccceEcCCCc--------cCcCCCCCCCccCCC
Confidence 45999999776543210 122899999988654
No 354
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=88.59 E-value=1.6 Score=40.94 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=34.1
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~ 208 (319)
..-..|+|+|.|.|.+++.+.- +++..|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl-~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSL-GYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhh-ccCceEEEeccchHHHHHHHH
Confidence 4557899999999999886654 456799999999777666654
No 355
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=88.52 E-value=0.39 Score=31.91 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=20.7
Q ss_pred eeeccCCCccc--cccCCCCCcccceecCceeeCccCCcccc
Q 020988 60 LFSCPICYEPL--IRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 60 ~l~CP~C~~~l--~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
|..||.||+.- .+... . +.-...++.|.+||...+.
T Consensus 1 LkPCPfCGg~~~~~~~~~-~---~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 1 LKPCPFCGGADVYLRRGF-D---PLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCCcceeeEecc-C---CCCCEEEEECCCCCCCccc
Confidence 45799999832 22111 1 1111245689999998643
No 356
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=88.47 E-value=1.5 Score=39.93 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=60.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCC--CCCCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL--PFASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~l--p~~~~~fD~V 241 (319)
..++++|-||.|.|.+.+...++---.++.-+|++.+.++..++.+...- .+..+++.+..||-..+ ....++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45789999999999999888877434578999999999999998776532 12356788888886543 2347899999
Q ss_pred Ee
Q 020988 242 HA 243 (319)
Q Consensus 242 ~~ 243 (319)
+.
T Consensus 200 i~ 201 (337)
T KOG1562|consen 200 IT 201 (337)
T ss_pred EE
Confidence 86
No 357
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=88.35 E-value=1.6 Score=41.43 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=70.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHH----HHHHhh--C-CCCeEEEEeC----CHHHHHHHHHHHhhcCccCCCCeEEE
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFS----RKFAKS--G-TYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALV 224 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~----~~l~~~--g-~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~i~~~ 224 (319)
..+.+.+...+.-.|+|+|-|.|.-- ..++.+ + |..++|||+. +...++.+.+++.+.-....-..+|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 34555555566778999999999633 333333 1 4568999999 78888888777654211112233443
Q ss_pred Ec---CCCCC-----CCCCCCccEEEecccccCCCCHHH----HHHHHHHhhcCCCeeEEEEe
Q 020988 225 RA---DVCRL-----PFASGFVDAVHAGAALHCWPSPSN----AASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 225 ~~---d~~~l-----p~~~~~fD~V~~~~vl~h~~d~~~----~l~el~rvlk~g~~~g~~~~ 275 (319)
.. +.+.+ ....+..=+|-+...|||+.+... -...+.+.+|.++|.-+++-
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 32 22322 233344445556778899874321 23446677777777755555
No 358
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=88.28 E-value=0.34 Score=37.69 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=28.2
Q ss_pred ccccccccccCeeeccCCCcc-ccccCCCCCcccceecCceeeCccCCccc
Q 020988 49 ERNQTLELEGDLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 49 ~~~~~~~~~~~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
.+++...++.....||.||.. -..........+.-+...++|..||++|.
T Consensus 61 ~~~~~~~~~~~~~~CpkCg~~ea~y~~~QtRsaDEp~T~Fy~C~~Cg~~wr 111 (113)
T COG1594 61 ETQGAKTLPTAKEKCPKCGNKEAYYWQLQTRSADEPETRFYKCTRCGYRWR 111 (113)
T ss_pred cccCccccccccccCCCCCCceeEEEeeehhccCCCceEEEEecccCCEee
Confidence 445555555557889999982 10000011112222334689999999884
No 359
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.04 E-value=1.7 Score=38.98 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=43.1
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhC-----CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
.+...++|+|||.|.++.++.+.. ....++.||-...-. .+..++.... ....+.-+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~--~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDE--SEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccC--CCCceEEEEEEeeccc
Confidence 566799999999999999998876 456899999865433 2333333220 0124555666776654
No 360
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=88.03 E-value=0.29 Score=36.47 Aligned_cols=36 Identities=25% Similarity=0.601 Sum_probs=27.1
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
|+-||.||.-|..... .. ...+.|+.|...|++...
T Consensus 1 m~FCP~Cgn~Live~g------~~-~~rf~C~tCpY~~~I~~e 36 (105)
T KOG2906|consen 1 MLFCPTCGNMLIVESG------ES-CNRFSCRTCPYVFPISRE 36 (105)
T ss_pred CcccCCCCCEEEEecC------Ce-EeeEEcCCCCceeeEeee
Confidence 5679999998876653 11 367899999999977633
No 361
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=87.62 E-value=0.43 Score=32.54 Aligned_cols=35 Identities=23% Similarity=0.549 Sum_probs=19.6
Q ss_pred CeeeccCCCccccccCC-CCCcccceecCceeeCccCC
Q 020988 59 DLFSCPICYEPLIRKGP-TGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~-~~~~~~~i~~~~~~C~~Cg~ 95 (319)
.|..||.||++-..... .....+.. ..+.|.+||.
T Consensus 2 ~LkPCPFCG~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred CCcCCCCCCCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 57789999875433221 11111110 3467999998
No 362
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=87.60 E-value=0.27 Score=36.39 Aligned_cols=30 Identities=27% Similarity=0.881 Sum_probs=22.0
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+.||.|+..-..... -+++.|..|+..|
T Consensus 34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 63 (91)
T TIGR00280 34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKF 63 (91)
T ss_pred cCccCCCCCCCceEEEe---------eEEEEcCCCCCEE
Confidence 45789999975332221 3789999999987
No 363
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=87.55 E-value=2 Score=41.38 Aligned_cols=108 Identities=23% Similarity=0.218 Sum_probs=64.5
Q ss_pred cCCCeEEEEcCCcCh--HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc---CccCCCCeEEEEcCCCCCCCC-CCCc
Q 020988 165 AQGGLLVDVSCGSGL--FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---NTILTSNLALVRADVCRLPFA-SGFV 238 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~--~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~i~~~~~d~~~lp~~-~~~f 238 (319)
..+..++|+|.|.|. ++....-.+....++.||.|..|........... +.....++.+.. ..+|.. ...|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccce
Confidence 456778889887664 3333333333457999999999999988776541 100111111111 124543 3569
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhh-cCCCeeEEEEe
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSY-SLLSICYLLQF 275 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvl-k~g~~~g~~~~ 275 (319)
|+|++.+.++++.++..-+.+..... +.+++++.++.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 99999999999998875555555433 33444444433
No 364
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.48 E-value=1.3 Score=42.07 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=41.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
+.-.+.+...++.+||-|..|....+..+.+ +| .+|++||+|+......+-++..
T Consensus 25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHHHHhCCCCCCeEEEEccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHHH
Confidence 4455677888999999997776666665544 44 6999999999988777655543
No 365
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=87.46 E-value=0.31 Score=38.86 Aligned_cols=42 Identities=24% Similarity=0.599 Sum_probs=26.7
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
......||.|++....... ....+ ...++|+.|+..|....|
T Consensus 27 ~~~~~~cP~C~s~~~~k~g-~~~~~---~qRyrC~~C~~tf~~~~~ 68 (129)
T COG3677 27 QITKVNCPRCKSSNVVKIG-GIRRG---HQRYKCKSCGSTFTVETG 68 (129)
T ss_pred hcccCcCCCCCccceeeEC-Ccccc---ccccccCCcCcceeeecc
Confidence 3456789999997622111 11111 367899999999965544
No 366
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=87.34 E-value=0.34 Score=32.74 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=18.9
Q ss_pred cCeeeccCCCcc-ccccCCCCCcccceecCceeeCccCCc
Q 020988 58 GDLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 58 ~~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
...|.||.||.. +.+... -. -....+.|++||..
T Consensus 23 ~~~F~CPnCG~~~I~RC~~-CR----k~~~~Y~CP~CGF~ 57 (59)
T PRK14890 23 AVKFLCPNCGEVIIYRCEK-CR----KQSNPYTCPKCGFE 57 (59)
T ss_pred cCEeeCCCCCCeeEeechh-HH----hcCCceECCCCCCc
Confidence 457888989886 332110 00 01245788888763
No 367
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=87.15 E-value=0.36 Score=43.05 Aligned_cols=35 Identities=34% Similarity=0.522 Sum_probs=26.1
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
+--...||.|+.-+...+ +......|++|+|.+..
T Consensus 25 e~lw~KCp~c~~~~y~~e--------L~~n~~vcp~c~~h~ri 59 (294)
T COG0777 25 EGLWTKCPSCGEMLYRKE--------LESNLKVCPKCGHHMRI 59 (294)
T ss_pred CCceeECCCccceeeHHH--------HHhhhhcccccCccccc
Confidence 556778999999765543 23467899999999943
No 368
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=87.14 E-value=0.29 Score=36.19 Aligned_cols=30 Identities=27% Similarity=0.800 Sum_probs=22.0
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+.||.|+..-..... -+++.|..|+..|
T Consensus 35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~ 64 (90)
T PRK03976 35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKF 64 (90)
T ss_pred cCccCCCCCCCceEEEE---------EEEEEcCCCCCEE
Confidence 45789999875433221 2789999999987
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.00 E-value=0.39 Score=41.89 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=10.9
Q ss_pred CceeeCccCCcccc
Q 020988 86 SGFKCRKCDKTYSS 99 (319)
Q Consensus 86 ~~~~C~~Cg~~f~~ 99 (319)
....|++||..+..
T Consensus 47 ~V~vCP~CgyA~~~ 60 (214)
T PF09986_consen 47 EVWVCPHCGYAAFE 60 (214)
T ss_pred eEEECCCCCCcccc
Confidence 46789999988743
No 370
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.90 E-value=0.3 Score=36.87 Aligned_cols=25 Identities=36% Similarity=0.897 Sum_probs=19.6
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+.+||+|+..++.. -++|++|+-+-
T Consensus 6 ~~~cPvcg~~~iVT-------------eL~c~~~etTV 30 (122)
T COG3877 6 INRCPVCGRKLIVT-------------ELKCSNCETTV 30 (122)
T ss_pred CCCCCcccccceeE-------------EEecCCCCceE
Confidence 56899999977654 37999998764
No 371
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=86.89 E-value=0.27 Score=36.80 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=23.2
Q ss_pred ccCeeeccCCCccccc----cCCCCCcccceecCceeeCccCCcc
Q 020988 57 EGDLFSCPICYEPLIR----KGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~----~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
....|.||.|+..... ... ...+.+.|.+||..|
T Consensus 19 L~k~FtCp~Cghe~vs~ctvkk~-------~~~g~~~Cg~CGls~ 56 (104)
T COG4888 19 LPKTFTCPRCGHEKVSSCTVKKT-------VNIGTAVCGNCGLSF 56 (104)
T ss_pred CCceEecCccCCeeeeEEEEEec-------CceeEEEcccCcceE
Confidence 3457999999984322 111 112678999999998
No 372
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=86.82 E-value=0.41 Score=38.76 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=24.9
Q ss_pred eeccCCCccccccCCC--CCcccceecCceeeCccCCccccCCc
Q 020988 61 FSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~--~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
+.||-|+.+-....++ ......| +..=.|.+||..|...+.
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~I-RRRReC~~C~~RFTTyEr 43 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSI-RRRRECLECHERFTTFER 43 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCee-eecccCCccCCccceeee
Confidence 4799999854332222 1222234 345589999999965443
No 373
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=86.81 E-value=3.2 Score=38.77 Aligned_cols=87 Identities=20% Similarity=0.111 Sum_probs=43.5
Q ss_pred cCCCeEEEEcCCcChHHHHHHhh--------C--------CCCeEEEEeCCHHHHHHHHHHHhhcC--ccCCCC--eEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKS--------G--------TYSGVVALDFSENMLRQCYDFIKQDN--TILTSN--LALV 224 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~--------g--------~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~--i~~~ 224 (319)
...-+|+|+||..|..+..+... . +..+|+--|+-.+--...-+.+.... .....+ +.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44568999999999988766543 0 12478888874432222211111100 000112 2334
Q ss_pred EcCCCCCCCCCCCccEEEecccccCCC
Q 020988 225 RADVCRLPFASGFVDAVHAGAALHCWP 251 (319)
Q Consensus 225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~ 251 (319)
.+.+..-=+++++.|++++..+|||+.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred CchhhhccCCCCceEEEEEechhhhcc
Confidence 466666557789999999999999875
No 374
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=86.80 E-value=3.6 Score=37.16 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=61.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---CCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V 241 (319)
..|..|+-+| -.-.++.+++-.+-..++..+|+++..+....+..++. ...++..+..|+.+ |++ .+.||+.
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~---g~~~ie~~~~Dlr~-plpe~~~~kFDvf 225 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL---GYNNIEAFVFDLRN-PLPEDLKRKFDVF 225 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh---Cccchhheeehhcc-cChHHHHhhCCee
Confidence 4677899999 44555555655555579999999999999999888776 35678888889876 333 3789998
Q ss_pred EecccccCCCCHHHHHHHHHH
Q 020988 242 HAGAALHCWPSPSNAASVFSS 262 (319)
Q Consensus 242 ~~~~vl~h~~d~~~~l~el~r 262 (319)
+. ||...+..++-
T Consensus 226 iT--------DPpeTi~alk~ 238 (354)
T COG1568 226 IT--------DPPETIKALKL 238 (354)
T ss_pred ec--------CchhhHHHHHH
Confidence 54 66555544443
No 375
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=86.80 E-value=1.4 Score=41.87 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=48.5
Q ss_pred CCeEEEEcCCcChHHHHHHhh---------------CCCCeEEEEeCCHHHHHHHHHHHhhcCcc----------CCCCe
Q 020988 167 GGLLVDVSCGSGLFSRKFAKS---------------GTYSGVVALDFSENMLRQCYDFIKQDNTI----------LTSNL 221 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~---------------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------~~~~i 221 (319)
..+|+|+|||+|.++..+... -|..+|+.-|+-.+-....-+.+...... ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999776554221 12356777777443322222222110000 00011
Q ss_pred EE---EEcCCCCCCCCCCCccEEEecccccCCCC
Q 020988 222 AL---VRADVCRLPFASGFVDAVHAGAALHCWPS 252 (319)
Q Consensus 222 ~~---~~~d~~~lp~~~~~fD~V~~~~vl~h~~d 252 (319)
-| +.+.+..-=|+.++.+++++..++||+..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceeccc
Confidence 12 22444444477899999999999998863
No 376
>PHA02998 RNA polymerase subunit; Provisional
Probab=86.72 E-value=0.36 Score=40.12 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=23.3
Q ss_pred CeeeccCCCccccc-cCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-..||.|++.-.. ..-...+.++-+...+.|.+||+.|
T Consensus 142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~w 181 (195)
T PHA02998 142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHF 181 (195)
T ss_pred cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCcc
Confidence 45789999983111 0111122233334578999999999
No 377
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=86.37 E-value=0.46 Score=39.96 Aligned_cols=34 Identities=32% Similarity=0.636 Sum_probs=26.4
Q ss_pred ccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 53 TLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 53 ~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
++.+=+=.-.|+.|+++|...+ ..+.|++||++=
T Consensus 142 ~~dlGVI~A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tE 175 (188)
T COG1096 142 GNDLGVIYARCSRCRAPLVKKG-----------NMLKCPNCGNTE 175 (188)
T ss_pred CCcceEEEEEccCCCcceEEcC-----------cEEECCCCCCEE
Confidence 3444445667999999998854 678999999875
No 378
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.25 E-value=5.4 Score=36.95 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=57.0
Q ss_pred ccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE---cCCCCCCCCCCCcc
Q 020988 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR---ADVCRLPFASGFVD 239 (319)
Q Consensus 164 ~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~---~d~~~lp~~~~~fD 239 (319)
..++.+||=+|+|. |.++.++++.....+|+++|.+++.++.+++. .. . .++. .++.++....+.+|
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga------~--~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA------D--KLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC------c--EEecCCcccHHHHhccCCCCC
Confidence 34688999999873 66667777764334699999999988888763 11 1 1111 11111111123588
Q ss_pred EEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 240 AVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 240 ~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+|+-. ...+ ..++...++++++|..-.+
T Consensus 238 ~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 238 VSFEV-----SGHP-SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEEEC-----CCCH-HHHHHHHHHhhcCCEEEEE
Confidence 88653 3333 3466777888888765444
No 379
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=86.10 E-value=0.48 Score=33.15 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=20.7
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-.||.||....... ....+.|++||..+
T Consensus 28 Sq~C~~CG~~~~~~~---------~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRR---------SGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCccccccccc---------ccceEEcCCCCCEE
Confidence 446999999655411 12678999999875
No 380
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=85.93 E-value=0.39 Score=38.89 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=24.7
Q ss_pred eeccCCCccccccCCC--CCcccceecCceeeCccCCccccCCc
Q 020988 61 FSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~--~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
+.||.|+.+-....++ ......| +..-.|.+||+.|..-+-
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aI-RRRReC~~C~~RFTTfE~ 43 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAI-RRRRECLECGERFTTFER 43 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchh-hhhhcccccccccchhhe
Confidence 4799999854332221 1222334 345589999999965444
No 381
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=85.73 E-value=0.49 Score=37.21 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=20.6
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
-.||.||..+.--+ +....|+.||..|+.
T Consensus 10 r~Cp~cg~kFYDLn----------k~p~vcP~cg~~~~~ 38 (129)
T TIGR02300 10 RICPNTGSKFYDLN----------RRPAVSPYTGEQFPP 38 (129)
T ss_pred ccCCCcCccccccC----------CCCccCCCcCCccCc
Confidence 46999999763322 144689999999844
No 382
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=85.67 E-value=0.7 Score=34.99 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=21.8
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..++.||.|++..... . +.. ......|++||..|
T Consensus 19 pt~f~CP~Cge~~v~v-~--~~k---~~~h~~C~~CG~y~ 52 (99)
T PRK14892 19 PKIFECPRCGKVSISV-K--IKK---NIAIITCGNCGLYT 52 (99)
T ss_pred CcEeECCCCCCeEeee-e--cCC---CcceEECCCCCCcc
Confidence 3689999999632210 0 111 13577999999987
No 383
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=85.60 E-value=16 Score=32.56 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=62.3
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----CCCCC
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFAS 235 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~ 235 (319)
...+..++|+|.|+..-++.+.+. +...+++-+|+|...++...+.+... +..-.+.-+++|.+. +| ..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--y~~l~v~~l~~~~~~~La~~~-~~ 152 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--YPGLEVNALCGDYELALAELP-RG 152 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh--CCCCeEeehhhhHHHHHhccc-CC
Confidence 345789999999998766666554 44468999999999988765555442 112234445666543 33 22
Q ss_pred CCccEEEecccccCCCCHH---HHHHHHHHhhcCCC
Q 020988 236 GFVDAVHAGAALHCWPSPS---NAASVFSSSYSLLS 268 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~---~~l~el~rvlk~g~ 268 (319)
+.==.++...+|..+ .|. .++.++...++||.
T Consensus 153 ~~Rl~~flGStlGN~-tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 153 GRRLFVFLGSTLGNL-TPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred CeEEEEEecccccCC-ChHHHHHHHHHHHhcCCCcc
Confidence 232344455678877 454 34555666666654
No 384
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=85.59 E-value=14 Score=33.57 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=58.0
Q ss_pred hccCCCeEEEEcCC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC------CCCC
Q 020988 163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFAS 235 (319)
Q Consensus 163 ~~~~~~~VLDiGcG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~ 235 (319)
...++.+||..|+| .|..+.++++.. +.+|++++.++...+.+++. +++.+..+-... ....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----------GADEVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----------CCCEEEcCCCcCHHHHHHHhcC
Confidence 34567899998876 377777777763 24799999999988887552 112222111110 1234
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+.+|+|+.... ....++++.+.++++|..-.+
T Consensus 231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEE
Confidence 57898875321 134577788888888755443
No 385
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=85.58 E-value=19 Score=32.31 Aligned_cols=114 Identities=11% Similarity=-0.022 Sum_probs=63.4
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C---
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L--- 231 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l--- 231 (319)
+.+.+.+.. ....|+.+|||-=.-...+.. .+...++=+|. |++++.-++.+.+.+.....+.+++..|+.. +
T Consensus 72 ~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~ 148 (260)
T TIGR00027 72 DFLLAAVAA-GIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAA 148 (260)
T ss_pred HHHHHHHhc-CCcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHH
Confidence 344444433 245799999998766555532 22346666665 4456655666654332234678889999862 1
Q ss_pred ----CCCCCCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 232 ----PFASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 ----p~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+....--++++-+++.+++... .+++.+.+... ++..++|
T Consensus 149 L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~---~gs~l~~ 195 (260)
T TIGR00027 149 LAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSA---PGSRLAF 195 (260)
T ss_pred HHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCC---CCcEEEE
Confidence 12222344677777888884322 33444444333 3445555
No 386
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=85.46 E-value=0.4 Score=34.93 Aligned_cols=38 Identities=18% Similarity=0.477 Sum_probs=15.0
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
..|.||.|+..-...-. ++.. -..+.+.|..||..|..
T Consensus 21 ~~F~CPfC~~~~sV~v~--idkk-~~~~~~~C~~Cg~~~~~ 58 (81)
T PF05129_consen 21 KVFDCPFCNHEKSVSVK--IDKK-EGIGILSCRVCGESFQT 58 (81)
T ss_dssp S----TTT--SS-EEEE--EETT-TTEEEEEESSS--EEEE
T ss_pred ceEcCCcCCCCCeEEEE--EEcc-CCEEEEEecCCCCeEEE
Confidence 68999999952111000 0000 01267899999999843
No 387
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=85.42 E-value=0.66 Score=29.77 Aligned_cols=28 Identities=29% Similarity=0.727 Sum_probs=18.2
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
+.||.|++.-..... . ...++|..|+++
T Consensus 19 ~~CP~Cg~~~~~~~~----~----~~~~~C~~C~~q 46 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLK----T----RGRYRCKACRKQ 46 (46)
T ss_pred CCCCCCCCeeeEEeC----C----CCeEECCCCCCc
Confidence 679999985211110 0 267899999874
No 388
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=85.11 E-value=0.41 Score=36.67 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=21.8
Q ss_pred eeccCCCcc-ccccCCCCCcccceecCceeeCccCCccc
Q 020988 61 FSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 61 l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
-+||.||.+ +..+.-...+.++.+.-.+.|++|++.|.
T Consensus 75 ~kCpkCghe~m~Y~T~QlRSADEGQTVFYTC~kC~~k~~ 113 (116)
T KOG2907|consen 75 HKCPKCGHEEMSYHTLQLRSADEGQTVFYTCPKCKYKFT 113 (116)
T ss_pred ccCcccCCchhhhhhhhcccccCCceEEEEcCccceeee
Confidence 479999973 21111111222233334789999999874
No 389
>PRK05978 hypothetical protein; Provisional
Probab=84.86 E-value=0.65 Score=37.87 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=20.5
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
..+||.||+.-...+.- .-.-+|+.||..|..
T Consensus 33 ~grCP~CG~G~LF~g~L--------kv~~~C~~CG~~~~~ 64 (148)
T PRK05978 33 RGRCPACGEGKLFRAFL--------KPVDHCAACGEDFTH 64 (148)
T ss_pred cCcCCCCCCCccccccc--------ccCCCccccCCcccc
Confidence 46799999854333210 123479999999843
No 390
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=84.74 E-value=0.55 Score=39.63 Aligned_cols=33 Identities=18% Similarity=0.482 Sum_probs=21.3
Q ss_pred CeeeccCCCcc-----ccccCCCCCcccceecCceeeCccCCcccc
Q 020988 59 DLFSCPICYEP-----LIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 59 ~~l~CP~C~~~-----l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
-.+.||.|++. +.... ...-.++|.+||+.++.
T Consensus 5 iy~~Cp~Cg~eev~hEVik~~--------g~~~lvrC~eCG~V~~~ 42 (201)
T COG1326 5 IYIECPSCGSEEVSHEVIKER--------GREPLVRCEECGTVHPA 42 (201)
T ss_pred EEEECCCCCcchhhHHHHHhc--------CCceEEEccCCCcEeec
Confidence 36789999952 11111 11247899999999943
No 391
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=84.54 E-value=0.58 Score=42.87 Aligned_cols=42 Identities=17% Similarity=0.339 Sum_probs=25.3
Q ss_pred cccCeeeccCCCccccc-cCCCCCcccceecCceeeCccCCcc
Q 020988 56 LEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 56 ~~~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
...+++.||.|++.-.. ..-...+.++-+...+.|.+|||.|
T Consensus 254 ~~t~~~~C~~C~~~~~~~~q~QtrsaDEpmT~f~~C~~Cg~~w 296 (299)
T TIGR01385 254 AVTDLFTCGKCKQKKCTYYQLQTRSADEPMTTFVTCEECGNRW 296 (299)
T ss_pred CCcccccCCCCCCccceEEEecccCCCCCCeEEEEcCCCCCee
Confidence 35678999999983211 0111122233334578999999987
No 392
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=84.34 E-value=1.8 Score=39.58 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=69.3
Q ss_pred eEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 020988 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA 245 (319)
Q Consensus 169 ~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~~~ 245 (319)
+++|+=||-|.+..-+.+.|. ..+.++|+++.+.+.-+.+. . ....+|+.++. ++. .+|+++.+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~---------~-~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANF---------P-EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHH---------T-EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhcc---------c-ccccccccccccccccc-cceEEEecc
Confidence 789999999999999999883 57899999999888888775 2 67888988875 443 599998753
Q ss_pred c---c------cCCCCHH-HHHHHHHHhhcCCCeeEEEEeeccchh
Q 020988 246 A---L------HCWPSPS-NAASVFSSSYSLLSICYLLQFRYTKII 281 (319)
Q Consensus 246 v---l------~h~~d~~-~~l~el~rvlk~g~~~g~~~~~~~~~~ 281 (319)
- + ....|+. .++.++.++++...|-.+++=.+..+.
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~ 115 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLL 115 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGG
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccceEEEecccceee
Confidence 1 1 1233443 356777777777777665554444433
No 393
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.27 E-value=0.55 Score=36.52 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=18.8
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+||.||+.-...+- -...-.|..||+.|
T Consensus 21 ~grCP~CGeGrLF~gF--------LK~~p~C~aCG~dy 50 (126)
T COG5349 21 RGRCPRCGEGRLFRGF--------LKVVPACEACGLDY 50 (126)
T ss_pred cCCCCCCCCchhhhhh--------cccCchhhhccccc
Confidence 3479999984322211 01233799999988
No 394
>PHA02768 hypothetical protein; Provisional
Probab=84.24 E-value=0.21 Score=33.43 Aligned_cols=45 Identities=22% Similarity=0.528 Sum_probs=25.5
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeee
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDL 106 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~ 106 (319)
+.||.||..+.....-..... +....+.|.+|+..|.....++..
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r-~H~k~~kc~~C~k~f~~~s~l~~~ 50 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLR-KHNTNLKLSNCKRISLRTGEYIEI 50 (55)
T ss_pred cCcchhCCeeccHHHHHHHHH-hcCCcccCCcccceecccceeEEE
Confidence 689999985533211000000 011357999999999766555544
No 395
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=84.17 E-value=0.63 Score=35.47 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=21.2
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
.||.||+.|.... +.+.|+.|+..+..
T Consensus 2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence 5999999886432 57899999988743
No 396
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=84.11 E-value=1 Score=30.20 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=24.4
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..-.+.|--|++....... ..++|..||+..
T Consensus 17 ~~miYiCgdC~~en~lk~~----------D~irCReCG~RI 47 (62)
T KOG3507|consen 17 ATMIYICGDCGQENTLKRG----------DVIRCRECGYRI 47 (62)
T ss_pred ccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence 4567899999997766542 678999999975
No 397
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=84.02 E-value=0.79 Score=34.94 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=25.1
Q ss_pred ccccCeeeccCCCcccc-ccCCCCCcccceecCceeeCccCCccc
Q 020988 55 ELEGDLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 55 ~~~~~~l~CP~C~~~l~-~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
+++..-..||.|++.-. .......+.++-+.-.+.|.+|||.|.
T Consensus 57 ~~~~~~~~Cp~Cg~~~a~f~~~Q~RsadE~~T~fy~C~~C~~~w~ 101 (104)
T TIGR01384 57 TLPTTRVECPKCGHKEAYYWLLQTRRADEPETRFYKCTKCGYVWR 101 (104)
T ss_pred CCCcccCCCCCCCCCeeEEEEeccCCCCCCcEEEEEeCCCCCeeE
Confidence 44444589999998321 111111222223335789999999874
No 398
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.85 E-value=5.3 Score=36.88 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=65.3
Q ss_pred EEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEeccc--
Q 020988 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAA-- 246 (319)
Q Consensus 170 VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~v-- 246 (319)
|+|+-||.|.+..-+.+.|. ..+.++|+++.+++.-+.++. + .++.+|+.++... -..+|+++...-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~--------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFG--------N-KVPFGDITKISPSDIPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCC--------C-CCCccChhhhhhhhCCCcCEEEecCCCc
Confidence 58999999999999988875 346789999998888777642 2 3456777766421 135798876421
Q ss_pred ---c----cCCCCHH-HHHHHHHHhhcCCCeeEEEEeecc
Q 020988 247 ---L----HCWPSPS-NAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 247 ---l----~h~~d~~-~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
. ..+.|+. .++.++.++++...|-.+++=.+.
T Consensus 71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~ 110 (315)
T TIGR00675 71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVK 110 (315)
T ss_pred ccchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccH
Confidence 1 1122333 567778888877777655444333
No 399
>PRK12495 hypothetical protein; Provisional
Probab=83.84 E-value=0.62 Score=40.17 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=23.3
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
..+-|+.||.||.... +..+|..|+..+.
T Consensus 41 sa~hC~~CG~PIpa~p-----------G~~~Cp~CQ~~~~ 69 (226)
T PRK12495 41 TNAHCDECGDPIFRHD-----------GQEFCPTCQQPVT 69 (226)
T ss_pred chhhcccccCcccCCC-----------CeeECCCCCCccc
Confidence 4567999999998442 6789999999884
No 400
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=83.43 E-value=0.58 Score=38.20 Aligned_cols=44 Identities=18% Similarity=0.434 Sum_probs=26.9
Q ss_pred ccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 51 NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 51 ~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-........+.||.|+......+..... + ..+.+.|+.||..-
T Consensus 90 ~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~~-d--~~~~f~Cp~Cg~~l 133 (147)
T smart00531 90 KLEDETNNAYYKCPNCQSKYTFLEANQLL-D--MDGTFTCPRCGEEL 133 (147)
T ss_pred HHhcccCCcEEECcCCCCEeeHHHHHHhc-C--CCCcEECCCCCCEE
Confidence 33344556799999999865443221110 1 12459999999864
No 401
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=83.22 E-value=0.56 Score=29.29 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=20.1
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
.||.|+..|....- +.+ .+..|++|+=.|.
T Consensus 1 ~CP~C~~~l~~~~~-----~~~--~id~C~~C~G~W~ 30 (41)
T PF13453_consen 1 KCPRCGTELEPVRL-----GDV--EIDVCPSCGGIWF 30 (41)
T ss_pred CcCCCCcccceEEE-----CCE--EEEECCCCCeEEc
Confidence 59999997654321 112 4568999997764
No 402
>PF12773 DZR: Double zinc ribbon
Probab=82.94 E-value=0.91 Score=29.49 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=22.3
Q ss_pred cccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
++.+...||.||.+|.... .....|++||...
T Consensus 8 ~~~~~~fC~~CG~~l~~~~----------~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 8 NPDDAKFCPHCGTPLPPPD----------QSKKICPNCGAEN 39 (50)
T ss_pred CCccccCChhhcCChhhcc----------CCCCCCcCCcCCC
Confidence 5566778999999887221 1456899998864
No 403
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=82.84 E-value=0.46 Score=40.12 Aligned_cols=40 Identities=23% Similarity=0.519 Sum_probs=27.8
Q ss_pred ccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 49 ERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 49 ~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
+..-........+.||.|+..+...++ ....|.|+.||..
T Consensus 106 k~~l~~e~~~~~Y~Cp~C~~rytf~eA--------~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 106 KEQLEEEENNMFFFCPNCHIRFTFDEA--------MEYGFRCPQCGEM 145 (178)
T ss_pred HHHhhhccCCCEEECCCCCcEEeHHHH--------hhcCCcCCCCCCC
Confidence 333444556679999999987665442 1257899999975
No 404
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=82.80 E-value=5.7 Score=35.92 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=46.3
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
.+.+... ...++..|||.=+|+|..+..+...+. ..+|+|+++..++.+.+++..
T Consensus 212 ~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r--~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 212 IERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR--RFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC--ceEEEecCHHHHHHHHHHHHh
Confidence 3444433 456899999999999999998888876 999999999999999999865
No 405
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=82.28 E-value=0.5 Score=39.11 Aligned_cols=37 Identities=19% Similarity=0.435 Sum_probs=26.4
Q ss_pred cccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 52 QTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 52 ~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
-........+.||.|+..+...+. ....|.|+.||..
T Consensus 101 l~~e~~~~~Y~Cp~c~~r~tf~eA--------~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 101 LEFETNNMFFICPNMCVRFTFNEA--------MELNFTCPRCGAM 137 (158)
T ss_pred HhhccCCCeEECCCCCcEeeHHHH--------HHcCCcCCCCCCE
Confidence 334456689999999987655442 1246899999975
No 406
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=82.18 E-value=0.88 Score=31.53 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=8.3
Q ss_pred ceeeCccCCc
Q 020988 87 GFKCRKCDKT 96 (319)
Q Consensus 87 ~~~C~~Cg~~ 96 (319)
...|++||++
T Consensus 36 ~v~C~~CGYT 45 (64)
T PF09855_consen 36 TVSCTNCGYT 45 (64)
T ss_pred EEECCCCCCE
Confidence 5689999985
No 407
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.77 E-value=0.23 Score=40.38 Aligned_cols=48 Identities=29% Similarity=0.573 Sum_probs=27.6
Q ss_pred CeeeccCCCccccccC--CCCCcccceecCceeeCccCCccccCCceeee
Q 020988 59 DLFSCPICYEPLIRKG--PTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDL 106 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~--~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~ 106 (319)
.+-.||.|+.+..-.- +..+..+.-+...-.|.+||+.||..+..++.
T Consensus 38 tI~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~a 87 (158)
T PF10083_consen 38 TITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALEA 87 (158)
T ss_pred HHHHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHHH
Confidence 4678999998653211 11111111222345799999999876554443
No 408
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.61 E-value=3.3 Score=33.57 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=25.1
Q ss_pred EEcCCcC--hHHHHHH--hhCCCCeEEEEeCCHHHHHHHHHH
Q 020988 172 DVSCGSG--LFSRKFA--KSGTYSGVVALDFSENMLRQCYDF 209 (319)
Q Consensus 172 DiGcG~G--~~~~~l~--~~g~~~~v~gvD~s~~~l~~a~~~ 209 (319)
|||++.| .....+. ..++..+|+++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544443 446677999999999999988888
No 409
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=81.60 E-value=1.1 Score=38.12 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=20.7
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
=.++||.|+......+....+...+....+.|++|+..+
T Consensus 17 l~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~ 55 (188)
T PF08996_consen 17 LKLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPL 55 (188)
T ss_dssp EEEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B-
T ss_pred eEeECCCCCCCccccccccCCccccccCcCcCCCCCCcC
Confidence 367899999976665543333445555788999999855
No 410
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=81.48 E-value=7.4 Score=38.48 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=63.1
Q ss_pred cCCCeEEEEcCCc-ChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC------------
Q 020988 165 AQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------------ 230 (319)
Q Consensus 165 ~~~~~VLDiGcG~-G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~------------ 230 (319)
.++.++|=+|+|. |..+..+++. |. .|+++|.+++.++.+++ + +.+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA--~V~v~d~~~~rle~a~~-l---------Ga~~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA--IVRAFDTRPEVKEQVQS-M---------GAEFLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-c---------CCeEEeccccccccccccceeec
Confidence 4678999999996 5666555555 44 79999999998777775 2 22333333211
Q ss_pred -----------CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 231 -----------LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 231 -----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
++-.-..+|+|+..-.+..-+.|.-..+++.+.+|+|....
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 11112469999887766666666556788888888886533
No 411
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=81.39 E-value=0.77 Score=29.05 Aligned_cols=12 Identities=25% Similarity=0.869 Sum_probs=9.7
Q ss_pred ceeeCccCCccc
Q 020988 87 GFKCRKCDKTYS 98 (319)
Q Consensus 87 ~~~C~~Cg~~f~ 98 (319)
.+.|++||..|.
T Consensus 32 ~~~C~~CGE~~~ 43 (46)
T TIGR03831 32 ALVCPQCGEEYL 43 (46)
T ss_pred ccccccCCCEee
Confidence 557999999874
No 412
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=81.33 E-value=0.86 Score=34.53 Aligned_cols=29 Identities=21% Similarity=0.604 Sum_probs=23.4
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
+-.||.|++....++. ..+.|+.|++.+.
T Consensus 3 lp~cp~c~sEytYed~----------~~~~cpec~~ew~ 31 (112)
T COG2824 3 LPPCPKCNSEYTYEDG----------GQLICPECAHEWN 31 (112)
T ss_pred CCCCCccCCceEEecC----------ceEeCchhccccc
Confidence 4469999998776653 5789999999884
No 413
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=80.80 E-value=1.1 Score=38.93 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=62.7
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (319)
.+.+.+++.+.++.+.+|.--|.|..+..+.+..+..+++++|.+|-+.+.|+....+. ..+.+.-+.+.+..++
T Consensus 32 ~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el---~~~~l~a~Lg~Fs~~~~l 108 (303)
T KOG2782|consen 32 LDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL---MHPTLKAVLGNFSYIKSL 108 (303)
T ss_pred hhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh---cchhHHHHHhhhHHHHHH
Confidence 46677888899999999999999999999999988888999999998877777654321 1222222333333322
Q ss_pred -----CCCCCccEEEecc
Q 020988 233 -----FASGFVDAVHAGA 245 (319)
Q Consensus 233 -----~~~~~fD~V~~~~ 245 (319)
+.+.++|-|++-.
T Consensus 109 ~~~~gl~~~~vDGiLmDl 126 (303)
T KOG2782|consen 109 IADTGLLDVGVDGILMDL 126 (303)
T ss_pred HHHhCCCcCCcceEEeec
Confidence 4466777777644
No 414
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.53 E-value=4.6 Score=30.82 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=40.0
Q ss_pred CCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccEEEec
Q 020988 175 CGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAG 244 (319)
Q Consensus 175 cG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~~~ 244 (319)
||.|.++..+++.. ....|+.+|.+++.++.+++. .+.++.+|..+.. ..-+..|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 56666666665541 123899999999988887763 4779999998743 223567877774
No 415
>PRK10458 DNA cytosine methylase; Provisional
Probab=80.51 E-value=12 Score=36.60 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=49.0
Q ss_pred HHHHHHHHhhccC------CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC
Q 020988 154 EFKMAQEYFKSAQ------GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (319)
Q Consensus 154 ~~~~l~~~l~~~~------~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d 227 (319)
+...+..+++..+ ..+++|+=||.|.+..-+...|. ..|.++|+++.+.+.-+.+... .+....+.+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~D 142 (467)
T PRK10458 69 EFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNED 142 (467)
T ss_pred HHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceeccC
Confidence 3455666654332 45899999999999999988775 4678999999877766665411 1233445566
Q ss_pred CCCCC
Q 020988 228 VCRLP 232 (319)
Q Consensus 228 ~~~lp 232 (319)
+.++.
T Consensus 143 I~~i~ 147 (467)
T PRK10458 143 IRDIT 147 (467)
T ss_pred hhhCc
Confidence 65553
No 416
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=80.40 E-value=1.1 Score=34.88 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=33.9
Q ss_pred CCCcchhhhhhhhhhhccCCcccccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 26 PRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
--.|-++|++-. ++.......+..-.-........|+.|+....... ..+.||.||..
T Consensus 38 ~v~pe~L~f~f~--~~~~~T~~egA~L~I~~vp~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~ 95 (113)
T PRK12380 38 CVEESAVRFSFE--IVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQ-----------HDAQCPHCHGE 95 (113)
T ss_pred ccCHHHHHHHHH--HHhCCCccCCCEEEEEeeCcEEEcccCCCEEecCC-----------cCccCcCCCCC
Confidence 345666777662 22223223333333444557889999997654432 34569999964
No 417
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=80.15 E-value=1.2 Score=29.02 Aligned_cols=30 Identities=17% Similarity=0.460 Sum_probs=21.8
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
-.+.|-.|+..+..... ....+|+.||+.-
T Consensus 5 ~~Y~C~~Cg~~~~~~~~---------~~~irCp~Cg~rI 34 (49)
T COG1996 5 MEYKCARCGREVELDQE---------TRGIRCPYCGSRI 34 (49)
T ss_pred EEEEhhhcCCeeehhhc---------cCceeCCCCCcEE
Confidence 46889999997742211 2568999999975
No 418
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=79.61 E-value=1.4 Score=26.13 Aligned_cols=24 Identities=21% Similarity=0.634 Sum_probs=15.6
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCC
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
..|++||-...... ....|+.||.
T Consensus 2 ~~C~~CGy~y~~~~-----------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE-----------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc-----------CCCcCcCCCC
Confidence 57888886433221 3468888886
No 419
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.50 E-value=4.2 Score=37.52 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=60.6
Q ss_pred hccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----------
Q 020988 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---------- 231 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---------- 231 (319)
.-+++.+||-+|+|. |..+...++.....+|+.+|++++-++.|++ +.. +.+.-+....
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga---------~~~~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA---------TVTDPSSHKSSPQELAELVE 235 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC---------eEEeeccccccHHHHHHHHH
Confidence 446789999999996 7777777777556799999999999999998 422 2222111110
Q ss_pred -CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 232 -PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
-+....+|+.+-+..++- .++-....++.+|.
T Consensus 236 ~~~g~~~~d~~~dCsG~~~------~~~aai~a~r~gGt 268 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGAEV------TIRAAIKATRSGGT 268 (354)
T ss_pred hhccccCCCeEEEccCchH------HHHHHHHHhccCCE
Confidence 123355899887665542 34445566677776
No 420
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=79.39 E-value=1.2 Score=34.69 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=36.0
Q ss_pred CCcchhhhhhhhhhhccCCcccccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc-ccCCc
Q 020988 27 RLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY-SSKDN 102 (319)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f-~~~~g 102 (319)
-.|.++|++-. ++...+.-.+..-..........|+.|+....... ..+.||.||..- .+..|
T Consensus 39 V~p~~L~faf~--~~~~~t~~ega~L~I~~~p~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~~~~i~~G 102 (115)
T TIGR00100 39 VNPSQLQFAFE--VVREGTVAEGAKLNIEDEPVECECEDCSEEVSPEI-----------DLYRCPKCHGIMLQVRAG 102 (115)
T ss_pred cCHHHHHHHHH--HHhCCCccCCCEEEEEeeCcEEEcccCCCEEecCC-----------cCccCcCCcCCCcEEecC
Confidence 35556666652 22233323344444444557899999997554432 356899999743 33333
No 421
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=79.33 E-value=0.34 Score=44.05 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=23.1
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
..+||.|+..+...+ +..+...|+.|||.|.
T Consensus 26 ~~~c~~c~~~~~~~~--------l~~~~~vc~~c~~h~r 56 (285)
T TIGR00515 26 WTKCPKCGQVLYTKE--------LERNLEVCPKCDHHMR 56 (285)
T ss_pred eeECCCCcchhhHHH--------HHhhCCCCCCCCCcCc
Confidence 677999999765432 2235678999999994
No 422
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=78.94 E-value=1.5 Score=39.57 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=31.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHH
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR 204 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~ 204 (319)
..+++|||+|||.|.-...+...+. ..+...|++...++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ceeeeEecchhhee
Confidence 4688999999999988877777663 57888888887763
No 423
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=78.88 E-value=1.2 Score=36.92 Aligned_cols=35 Identities=29% Similarity=0.566 Sum_probs=20.4
Q ss_pred ccCCCcc-cccc-CCCCC-cccceecCceeeCccCCcc
Q 020988 63 CPICYEP-LIRK-GPTGL-TLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 63 CP~C~~~-l~~~-~~~~~-~~~~i~~~~~~C~~Cg~~f 97 (319)
||+|+.+ +... ....+ ....+.-..+.|+.||..+
T Consensus 1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~ 38 (163)
T TIGR00340 1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRS 38 (163)
T ss_pred CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCch
Confidence 9999974 3221 00011 1233333578999999987
No 424
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=78.74 E-value=1.3 Score=36.80 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=19.2
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
..+||+||-...- . ..-.||.||+.
T Consensus 134 ~~vC~vCGy~~~g-e-----------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG-E-----------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC-C-----------CCCcCCCCCCh
Confidence 8999999986544 2 23589999974
No 425
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=78.41 E-value=0.38 Score=43.82 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=27.7
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccc-cCCceeeecccc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS-SKDNYLDLTVIS 110 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~-~~~g~~~~~~~~ 110 (319)
..+||.|+..+.... +......|+.|||.|. .....++.+.+.
T Consensus 38 w~kc~~C~~~~~~~~--------l~~~~~vcp~c~~h~rltAreRI~~L~D~ 81 (296)
T CHL00174 38 WVQCENCYGLNYKKF--------LKSKMNICEQCGYHLKMSSSDRIELLIDP 81 (296)
T ss_pred eeECCCccchhhHHH--------HHHcCCCCCCCCCCcCCCHHHHHHHHccC
Confidence 677999999765432 2235678999999994 333444444443
No 426
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=77.55 E-value=12 Score=38.39 Aligned_cols=109 Identities=14% Similarity=-0.014 Sum_probs=62.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhC-------C-----CCeEEEEeCCH---HHHHHHH-----------HHHhhc-----
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDFSE---NMLRQCY-----------DFIKQD----- 213 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g-------~-----~~~v~gvD~s~---~~l~~a~-----------~~~~~~----- 213 (319)
.+.-+|||+|=|+|.+.....+.. + ..+++++|..+ +.+..+. +.....
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345789999999998665554321 2 24789999643 3332222 111110
Q ss_pred Cc------cCCCCeEEEEcCCCC-CCCCCCCccEEEecc-cccCCCCH--HHHHHHHHHhhcCCCeeEEE
Q 020988 214 NT------ILTSNLALVRADVCR-LPFASGFVDAVHAGA-ALHCWPSP--SNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 214 ~~------~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~-vl~h~~d~--~~~l~el~rvlk~g~~~g~~ 273 (319)
+. ...-.+++..+|+.+ ++--...||+|+.-. +-.+-|+. ..++++|.+++++++.+..+
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 00 000134566788754 232225699998743 33333322 47899999999998776644
No 427
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.42 E-value=18 Score=33.53 Aligned_cols=94 Identities=13% Similarity=0.036 Sum_probs=55.4
Q ss_pred ccCCCeEEEEcCCc-ChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988 164 SAQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (319)
Q Consensus 164 ~~~~~~VLDiGcG~-G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (319)
..++.+||=+|||. |.++.++++. ....+|+++|.+++-++.+++ +. ..... + ++. .+..+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---------~~~~~-~--~~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---------ETYLI-D--DIP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---------ceeeh-h--hhh-hccCCcEE
Confidence 35688999999875 5565666654 323589999999988777764 21 11111 1 111 11248888
Q ss_pred EecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 242 HAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+-.-. .- .....+.+..++++++|....+-
T Consensus 227 iD~~G--~~-~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 FECVG--GR-GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EECCC--CC-ccHHHHHHHHHhCcCCcEEEEEe
Confidence 74322 10 02345777778888887765443
No 428
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=77.29 E-value=0.93 Score=30.13 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=5.9
Q ss_pred eccCCCccccc
Q 020988 62 SCPICYEPLIR 72 (319)
Q Consensus 62 ~CP~C~~~l~~ 72 (319)
+||+|+.+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999998854
No 429
>COG4640 Predicted membrane protein [Function unknown]
Probab=77.25 E-value=1.2 Score=41.79 Aligned_cols=28 Identities=21% Similarity=0.685 Sum_probs=19.8
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
|.-||-||+.... +...|+.|||.+...
T Consensus 1 M~fC~kcG~qk~E-------------d~~qC~qCG~~~t~~ 28 (465)
T COG4640 1 MKFCPKCGSQKAE-------------DDVQCTQCGHKFTSR 28 (465)
T ss_pred CCccccccccccc-------------ccccccccCCcCCch
Confidence 5679999974432 234599999998544
No 430
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=77.05 E-value=0.44 Score=43.49 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=22.8
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
..+||.|+..+...+ +......|+.|||.|.
T Consensus 27 ~~~c~~c~~~~~~~~--------l~~~~~vc~~c~~h~r 57 (292)
T PRK05654 27 WTKCPSCGQVLYRKE--------LEANLNVCPKCGHHMR 57 (292)
T ss_pred eeECCCccchhhHHH--------HHhcCCCCCCCCCCee
Confidence 678999999765432 2234568999999994
No 431
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=77.04 E-value=1.6 Score=33.97 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCcchhhhhhhhhhhccCCcccccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 27 RLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
-.|.++|++-.. +.......+..-........+.|+.|+........ ..+.||.||..
T Consensus 39 V~p~~L~f~f~~--~~~~t~~egA~L~i~~~p~~~~C~~Cg~~~~~~~~----------~~~~CP~Cgs~ 96 (114)
T PRK03681 39 VETSSLAFCFDL--VCRGTVAEGCKLHLEEQEAECWCETCQQYVTLLTQ----------RVRRCPQCHGD 96 (114)
T ss_pred cCHHHHHHHHHH--HhCCCccCCCEEEEEeeCcEEEcccCCCeeecCCc----------cCCcCcCcCCC
Confidence 356667776622 22222233333344445578899999985544321 34679999964
No 432
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=76.82 E-value=2.4 Score=25.92 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=17.2
Q ss_pred eeccCCCc--cccccCCCCCcccceecCceeeCccCC
Q 020988 61 FSCPICYE--PLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 61 l~CP~C~~--~l~~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
..||.|++ .+...+ .-..+.+.|..|+.
T Consensus 4 ~pCP~CGG~DrFr~~d-------~~g~G~~~C~~Cg~ 33 (37)
T smart00778 4 GPCPNCGGSDRFRFDD-------KDGRGTWFCSVCGA 33 (37)
T ss_pred cCCCCCCCcccccccc-------CCCCcCEEeCCCCC
Confidence 36999998 232211 01136789999974
No 433
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=76.77 E-value=3.4 Score=27.76 Aligned_cols=22 Identities=36% Similarity=0.896 Sum_probs=16.5
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccC
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD 94 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg 94 (319)
++-.||.||+.-..+ ..|++||
T Consensus 25 ~l~~c~~cg~~~~~H--------------~vc~~cG 46 (56)
T PF01783_consen 25 NLVKCPNCGEPKLPH--------------RVCPSCG 46 (56)
T ss_dssp SEEESSSSSSEESTT--------------SBCTTTB
T ss_pred ceeeeccCCCEeccc--------------EeeCCCC
Confidence 678899999854322 4699998
No 434
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=76.66 E-value=46 Score=32.88 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=75.9
Q ss_pred CCCCcHHHHHHHHHHhhcc--CCCeEEEEcCCcChHHHHHHhh---C-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCC
Q 020988 147 GFPGPDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKS---G-TYSGVVALDFSENMLRQCYDFIKQDNTILTSN 220 (319)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~---g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 220 (319)
.++.|....+.+...+.+. ++..|.|.-||+|.++....+. + ....++|-+....+...++.+..-.+.. ...
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~-~~t 274 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID-YAN 274 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC-ccc
Confidence 3566777777776666543 5578999999999998765432 1 1246899999999999988764322100 111
Q ss_pred eEEEEcCCCCC-CC-CCCCccEEEeccc------------------------ccCCCC-HHHHHHHHHHhhcCCCeeEEE
Q 020988 221 LALVRADVCRL-PF-ASGFVDAVHAGAA------------------------LHCWPS-PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 221 i~~~~~d~~~l-p~-~~~~fD~V~~~~v------------------------l~h~~d-~~~~l~el~rvlk~g~~~g~~ 273 (319)
.....+|-..- .+ ....||+|+++-- +.+..+ -..++..+..+|+++|..+++
T Consensus 275 ~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 275 FNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred cCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 22223332221 11 2345777765431 111111 124566778888888877766
Q ss_pred Ee
Q 020988 274 QF 275 (319)
Q Consensus 274 ~~ 275 (319)
..
T Consensus 355 ~~ 356 (501)
T TIGR00497 355 CF 356 (501)
T ss_pred ec
Confidence 55
No 435
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=76.47 E-value=2.2 Score=38.21 Aligned_cols=34 Identities=18% Similarity=0.415 Sum_probs=23.5
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc-ccCC
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY-SSKD 101 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f-~~~~ 101 (319)
..--||.||+++..... .....|++||+.+ +...
T Consensus 98 ~~~fC~~CG~~~~~~~~---------~~~~~C~~c~~~~yp~~~ 132 (256)
T PRK00241 98 SHRFCGYCGHPMHPSKT---------EWAMLCPHCRERYYPRIA 132 (256)
T ss_pred cCccccccCCCCeecCC---------ceeEECCCCCCEECCCCC
Confidence 45569999998765432 2457899999977 4433
No 436
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=76.42 E-value=2.7 Score=34.77 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=56.5
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeE-EEEcCCCC-CCCCCCCccEEEec
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCR-LPFASGFVDAVHAG 244 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~-~~~~d~~~-lp~~~~~fD~V~~~ 244 (319)
+++.+-+|...=..-..+.+.|. .++.-+|.++- +.-... ..++. +...|+.. ..--.++||++.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA-~~iltveyn~L--~i~~~~--------~dr~ssi~p~df~~~~~~y~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGA-AKILTVEYNKL--EIQEEF--------RDRLSSILPVDFAKNWQKYAGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCC-ceEEEEeeccc--ccCccc--------ccccccccHHHHHHHHHHhhccchhhhee
Confidence 46777787776655555555553 57888887541 111100 01111 11112211 11124789999999
Q ss_pred ccccCCC--------CH---HHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWP--------SP---SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~--------d~---~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||+. || .+.+.++.++||+||.+.+-+.
T Consensus 71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 9999973 22 3567788888888887766655
No 437
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=76.39 E-value=4.5 Score=40.43 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=30.8
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCH
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSE 200 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~ 200 (319)
..++..|||+||..|.|+..+.+..| ...|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 45678899999999999988887744 55799999966
No 438
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=76.30 E-value=2.6 Score=28.96 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=8.3
Q ss_pred CeeeccCCCcc
Q 020988 59 DLFSCPICYEP 69 (319)
Q Consensus 59 ~~l~CP~C~~~ 69 (319)
....||.||..
T Consensus 3 ~~~kCpKCgn~ 13 (68)
T COG3478 3 NAFKCPKCGNT 13 (68)
T ss_pred ccccCCCcCCc
Confidence 35679999973
No 439
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=75.81 E-value=2 Score=26.39 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=19.4
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCC
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
.++||.|+..+........ .....|+.||.
T Consensus 5 ~y~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQKISD------DPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEecCC------CCCCCCCCCCC
Confidence 5789999996543322110 24568999997
No 440
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=75.65 E-value=14 Score=29.30 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=42.0
Q ss_pred cCCCeEEEEcCCcCh-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEE
Q 020988 165 AQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~ 242 (319)
...++|+|||-|.=. .+..|.+.|. .|+++|+.+. .+ ..++.++..|+.+..+. =...|+|+
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G~--dV~~tDi~~~---~a-----------~~g~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERGF--DVIATDINPR---KA-----------PEGVNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S------------------STTEE---SSS--HHHHTTEEEEE
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcCC--cEEEEECccc---cc-----------ccCcceeeecccCCCHHHhcCCcEEE
Confidence 345699999999754 6667777776 9999999986 11 23778899999874321 13678888
Q ss_pred ecccccCCCCHHHHHHHHHH
Q 020988 243 AGAALHCWPSPSNAASVFSS 262 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~r 262 (319)
+.. --++....+.++.+
T Consensus 76 SiR---PP~El~~~il~lA~ 92 (127)
T PF03686_consen 76 SIR---PPPELQPPILELAK 92 (127)
T ss_dssp EES-----TTSHHHHHHHHH
T ss_pred EeC---CChHHhHHHHHHHH
Confidence 843 23333444444444
No 441
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=75.63 E-value=1.9 Score=27.93 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=18.4
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
--.||.||.....-.. ...+.|..||.+.
T Consensus 19 ~~~CPrCG~gvfmA~H---------~dR~~CGkCgyTe 47 (51)
T COG1998 19 NRFCPRCGPGVFMADH---------KDRWACGKCGYTE 47 (51)
T ss_pred cccCCCCCCcchhhhc---------CceeEeccccceE
Confidence 3459999963322111 1578999999764
No 442
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=74.99 E-value=56 Score=28.44 Aligned_cols=110 Identities=14% Similarity=0.074 Sum_probs=64.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcC----hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC-C
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-R 230 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G----~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~-~ 230 (319)
+.+..+.....-..++++.|+.| .++...+.+..+.+++.|-+++..+...++.+...+ ..+-++|+.++.. +
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~--~~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG--LSDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc--ccccceEEecCCHHH
Confidence 34444444445567899966543 223333333344599999999888777777775432 2244688888753 2
Q ss_pred -CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 231 -LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 231 -lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
++. -...|+++.-. +.++..+++.++++....+.+++
T Consensus 109 ~~~~-~~~iDF~vVDc------~~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 109 VMPG-LKGIDFVVVDC------KREDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred HHhh-ccCCCEEEEeC------CchhHHHHHHHHhccCCCceEEE
Confidence 232 24578776532 23455557777887665555444
No 443
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=74.45 E-value=1.5 Score=38.52 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=12.3
Q ss_pred eeeccCCCcc-ccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
-.-||.||+. |...+. .-...-+.|++|+..|
T Consensus 31 n~yCP~Cg~~~L~~f~N------N~PVaDF~C~~C~eey 63 (254)
T PF06044_consen 31 NMYCPNCGSKPLSKFEN------NRPVADFYCPNCNEEY 63 (254)
T ss_dssp H---TTT--SS-EE--------------EEE-TTT--EE
T ss_pred CCcCCCCCChhHhhccC------CCccceeECCCCchHH
Confidence 4569999995 544321 1112578999999999
No 444
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=74.45 E-value=5 Score=32.70 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CC---CCCCCccEE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP---FASGFVDAV 241 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp---~~~~~fD~V 241 (319)
..+.|||+|=|+|+.-..+.+..|+.+++.+|-.-..-..+ ..+.-.++.+|+.+ +| .-....-++
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~----------~P~~~~~ilGdi~~tl~~~~~~g~~a~la 97 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSS----------TPPEEDLILGDIRETLPALARFGAGAALA 97 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-------------GGGEEES-HHHHHHHHHHH-S-EEEE
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCC----------CCchHheeeccHHHHhHHHHhcCCceEEE
Confidence 34799999999999999999999999999999743211111 12334578888765 23 122334444
Q ss_pred EecccccCCCCHHHH-HHHHHH-hhcCCCeeEEEEee
Q 020988 242 HAGAALHCWPSPSNA-ASVFSS-SYSLLSICYLLQFR 276 (319)
Q Consensus 242 ~~~~vl~h~~d~~~~-l~el~r-vlk~g~~~g~~~~~ 276 (319)
++-...++ ++.+.+ .+.+.. +...+.++|+++-.
T Consensus 98 HaD~G~g~-~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 98 HADIGTGD-KEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp EE----S--HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred EeecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 44333332 222222 222222 33345666766653
No 445
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=74.25 E-value=2.3 Score=28.71 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=15.6
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..-+.||+...++. .-++...|||+|
T Consensus 9 ~~~~~CPiT~~~~~--------------~PV~s~~C~H~f 34 (57)
T PF11789_consen 9 TISLKCPITLQPFE--------------DPVKSKKCGHTF 34 (57)
T ss_dssp B--SB-TTTSSB-S--------------SEEEESSS--EE
T ss_pred EeccCCCCcCChhh--------------CCcCcCCCCCee
Confidence 34588999999764 346788899998
No 446
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=74.17 E-value=2.7 Score=34.11 Aligned_cols=40 Identities=18% Similarity=0.402 Sum_probs=28.0
Q ss_pred ccccccccccc-----cCeeeccCCCcc------ccccCCCCCcccceecCceeeCccCCcc
Q 020988 47 KSERNQTLELE-----GDLFSCPICYEP------LIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 47 ~~~~~~~~~~~-----~~~l~CP~C~~~------l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.++|.+++++- ..+.-| .|.+. +..+.. ...+|+.|||.|
T Consensus 93 ~~GTkedP~lV~S~~d~RiVGC-~c~eD~~~V~Wmwl~Kg----------e~~rc~eCG~~f 143 (153)
T KOG3352|consen 93 PSGTKEDPNLVPSYYDKRIVGC-GCEEDSHAVVWMWLEKG----------ETQRCPECGHYF 143 (153)
T ss_pred CCCcccCCccccccCCceEEee-cccCCCcceEEEEEEcC----------CcccCCcccceE
Confidence 67888888886 456668 88872 122322 467899999999
No 447
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=73.31 E-value=18 Score=36.68 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=41.8
Q ss_pred CeEEEEcCCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccEE
Q 020988 168 GLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAV 241 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V 241 (319)
.+|+=+|+ |.++..+++.. .+..++.+|.+++.++.+++. +..++.+|..+.. ..-+..|+|
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 45655555 44444444321 123899999999999888652 5678999998743 223467777
Q ss_pred Eec
Q 020988 242 HAG 244 (319)
Q Consensus 242 ~~~ 244 (319)
++.
T Consensus 469 v~~ 471 (601)
T PRK03659 469 VIT 471 (601)
T ss_pred EEE
Confidence 763
No 448
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=73.14 E-value=50 Score=28.55 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=33.0
Q ss_pred cCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 020988 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (319)
Q Consensus 165 ~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~ 208 (319)
.++.+||..|+|. |..+..+++.. ..++++++.++...+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 6788999999986 66666666653 2589999999887777654
No 449
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=72.89 E-value=2.1 Score=39.39 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=21.0
Q ss_pred CeeeccCCCcc-ccc-cCCCCCcccceecCceeeCccCCccc
Q 020988 59 DLFSCPICYEP-LIR-KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 59 ~~l~CP~C~~~-l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
+--.||+||+. ... ....+ .--..++.|.-|++.+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~----~~G~RyL~CslC~teW~ 223 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGT----TQGLRYLHCNLCESEWH 223 (309)
T ss_pred CCCCCCCCCCcchhheeeccC----CCCceEEEcCCCCCccc
Confidence 45679999993 211 00000 01126789999999883
No 450
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=72.74 E-value=3.4 Score=37.27 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=25.0
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc-ccCCcee
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY-SSKDNYL 104 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f-~~~~g~~ 104 (319)
..--||.||++...... .....|++||+.+ |..+..+
T Consensus 110 ~~RFCg~CG~~~~~~~~---------g~~~~C~~cg~~~fPR~dP~v 147 (279)
T COG2816 110 SHRFCGRCGTKTYPREG---------GWARVCPKCGHEHFPRIDPCV 147 (279)
T ss_pred hCcCCCCCCCcCccccC---------ceeeeCCCCCCccCCCCCCeE
Confidence 34459999998765442 2456899999976 6554433
No 451
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=72.67 E-value=3 Score=29.54 Aligned_cols=34 Identities=21% Similarity=0.449 Sum_probs=21.2
Q ss_pred eccCCCc--cccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988 62 SCPICYE--PLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 62 ~CP~C~~--~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
.||.|++ .|..-.. +. ..+..|-.||+....++.
T Consensus 10 ~CP~C~~~D~i~~~~e-----~~--ve~vECV~CGy~e~~~~~ 45 (71)
T PF09526_consen 10 VCPKCQAMDTIMMWRE-----NG--VEYVECVECGYTERQPDQ 45 (71)
T ss_pred cCCCCcCccEEEEEEe-----CC--ceEEEecCCCCeeccCCc
Confidence 6999998 3322111 11 257899999998744433
No 452
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=72.43 E-value=1.7 Score=37.18 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=21.4
Q ss_pred eeccCCCccc----cccC-CCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPL----IRKG-PTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l----~~~~-~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+.||.|+... .... -+. ...+.-..+.|+.||..+
T Consensus 1 ~~Cp~C~~~~~~~~~~~~~IP~--F~evii~sf~C~~CGyr~ 40 (192)
T TIGR00310 1 IDCPSCGGECETVMKTVNDIPY--FGEVLETSTICEHCGYRS 40 (192)
T ss_pred CcCCCCCCCCEEEEEEEcCCCC--cceEEEEEEECCCCCCcc
Confidence 3699999742 1122 111 233444678999999987
No 453
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=72.35 E-value=2.3 Score=39.04 Aligned_cols=36 Identities=22% Similarity=0.530 Sum_probs=21.3
Q ss_pred cCeeeccCCCcc-c---cccCCCCCcccceecCceeeCccCCccc
Q 020988 58 GDLFSCPICYEP-L---IRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 58 ~~~l~CP~C~~~-l---~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
.+--.||+||+. . ...+. ..--..++.|.-|++.+.
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~-----~~~G~RyL~CslC~teW~ 221 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGG-----KETGLRYLSCSLCATEWH 221 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccC-----CCCCceEEEcCCCCCccc
Confidence 345589999993 2 11110 001125788999998883
No 454
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=72.17 E-value=2.2 Score=33.41 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=31.7
Q ss_pred CcchhhhhhhhhhhccCC-cccccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 28 LPQSLRFSSTIRAVTLQP-AKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.|-+++++-. ++...+ ...+..-.-+.....+.|+.|+........ ...+||.||..-
T Consensus 40 ~pe~L~faf~--~~~~~T~~~ega~L~Ie~vp~~~~C~~Cg~~~~~~~~----------~~~~CP~Cgs~~ 98 (117)
T PRK00564 40 DKSLFVSAFE--TFREESLVCKDAILDIVDEKVELECKDCSHVFKPNAL----------DYGVCEKCHSKN 98 (117)
T ss_pred CHHHHHHHHH--HHhcCCcccCCCEEEEEecCCEEEhhhCCCccccCCc----------cCCcCcCCCCCc
Confidence 4555666551 112222 122333333445578899999975544321 345699999753
No 455
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=72.06 E-value=16 Score=34.65 Aligned_cols=115 Identities=6% Similarity=-0.023 Sum_probs=70.1
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh-------cCccCCCCeEEEEcCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTILTSNLALVRADV 228 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~i~~~~~d~ 228 (319)
..+.+-+...++....|+|.|-|.....++..+....-+|+++.....+.+..+.+. .|- ....+..+.+++
T Consensus 182 ~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-~~~~~~~i~gsf 260 (419)
T KOG3924|consen 182 RSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-KPNKIETIHGSF 260 (419)
T ss_pred HHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-CcCceeeccccc
Confidence 344455667788999999999999988888776555678888876655555432211 110 134567777777
Q ss_pred CCCCC---CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 229 CRLPF---ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 229 ~~lp~---~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..-.. -....++|+++++.. ||+..++ +..++....++..++-
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~F---dp~L~lr-~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAF---DPELKLR-SKEILQKCKDGTRIIS 306 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccC---CHHHHHh-hHHHHhhCCCcceEec
Confidence 65321 135678888887754 4443322 2245554444444443
No 456
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=71.96 E-value=2.7 Score=28.39 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=18.4
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCC
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
...+..||.||+....+ -.|++||.
T Consensus 24 ~~~l~~C~~CG~~~~~H--------------~vC~~CG~ 48 (57)
T PRK12286 24 APGLVECPNCGEPKLPH--------------RVCPSCGY 48 (57)
T ss_pred CCcceECCCCCCccCCe--------------EECCCCCc
Confidence 34677899999965433 47999993
No 457
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=71.95 E-value=3.5 Score=27.90 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=19.8
Q ss_pred eccCCCc--cccccCCCCCcccceecCceeeCccCCccccC
Q 020988 62 SCPICYE--PLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 62 ~CP~C~~--~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
.||.|+. .+..-.. +.+ ....|-.||+.-..+
T Consensus 11 ~CP~C~~~Dtl~~~~e-----~~~--e~vECv~Cg~~~~~~ 44 (59)
T TIGR02443 11 VCPACSAQDTLAMWKE-----NNI--ELVECVECGYQEQQK 44 (59)
T ss_pred cCCCCcCccEEEEEEe-----CCc--eEEEeccCCCccccC
Confidence 6999998 3322111 111 467999999986433
No 458
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=71.47 E-value=20 Score=32.01 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=59.3
Q ss_pred HHHhhccCCCeEEEEcCCcChHHHHHHh---h-C-CCCeEEEEeCCH--------------------------HHHHHHH
Q 020988 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAK---S-G-TYSGVVALDFSE--------------------------NMLRQCY 207 (319)
Q Consensus 159 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~---~-g-~~~~v~gvD~s~--------------------------~~l~~a~ 207 (319)
...+...-++.|+|.||-.|..+..++. . + ...++++.|--+ ...+..+
T Consensus 67 ~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~ 146 (248)
T PF05711_consen 67 EQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVR 146 (248)
T ss_dssp HHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHH
T ss_pred HHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHH
Confidence 3334445678999999999976654432 2 1 345788988611 1233444
Q ss_pred HHHhhcCccCCCCeEEEEcCCCC-CC-CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeeccch
Q 020988 208 DFIKQDNTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYTKI 280 (319)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~~~ 280 (319)
+++...+. ...++.++.|.+.+ +| .+.+.+-++.+-. .--+.....+..+.-.+.++|++++-.+..
T Consensus 147 ~n~~~~gl-~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-----DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 147 ENFARYGL-LDDNVRFVKGWFPDTLPDAPIERIALLHLDC-----DLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HCCCCTTT-SSTTEEEEES-HHHHCCC-TT--EEEEEE--------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHcCC-CcccEEEECCcchhhhccCCCccEEEEEEec-----cchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 44433221 23589999998754 34 1223333332211 112344555666677788899999966654
No 459
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=71.43 E-value=4.5 Score=24.53 Aligned_cols=30 Identities=20% Similarity=0.623 Sum_probs=17.8
Q ss_pred eeeccCCCccc--cccCCCCCcccceecCceeeCccC
Q 020988 60 LFSCPICYEPL--IRKGPTGLTLGAIYRSGFKCRKCD 94 (319)
Q Consensus 60 ~l~CP~C~~~l--~~~~~~~~~~~~i~~~~~~C~~Cg 94 (319)
-..||.|++.. ...+. +.+. ...++|..|.
T Consensus 5 ~v~CP~C~s~~~v~k~G~-~~~G----~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGK-SPSG----HQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCCC-CCCC----CEeEecCcCC
Confidence 35799999965 33321 1111 1468999884
No 460
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=70.99 E-value=3.1 Score=34.50 Aligned_cols=29 Identities=28% Similarity=0.794 Sum_probs=22.6
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
=+..||.|+..+..... +.+.|+.|+..+
T Consensus 33 ~Y~aC~~C~kkv~~~~~----------~~~~C~~C~~~~ 61 (166)
T cd04476 33 WYPACPGCNKKVVEEGN----------GTYRCEKCNKSV 61 (166)
T ss_pred EEccccccCcccEeCCC----------CcEECCCCCCcC
Confidence 36779999998765432 578999999976
No 461
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=70.66 E-value=2.7 Score=33.75 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=22.0
Q ss_pred ccCeeeccCCCccccccC-----------CCCCcccceecCceeeCccCCc
Q 020988 57 EGDLFSCPICYEPLIRKG-----------PTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~-----------~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
......|+.||......+ +..+.+. .....+.||.||..
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~CP~Cgs~ 116 (135)
T PRK03824 67 EEAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPE-VVHAFLKCPKCGSR 116 (135)
T ss_pred cceEEECCCCCCEEeccccccccccccccccccccc-ccccCcCCcCCCCC
Confidence 346899999997543321 1111111 11245789999975
No 462
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=70.66 E-value=18 Score=32.92 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=55.9
Q ss_pred CeEEEEcCCc--ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 168 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 168 ~~VLDiGcG~--G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
.+|+=+|.|- |.+++.+.+.|+...++|.|.+...++.+... ++.....+... -......|+|+..-
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~-~~~~~~aD~Vivav 72 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGL-AEAAAEADLVIVAV 72 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------Ccccccccchh-hhhcccCCEEEEec
Confidence 5788888884 67888888889877889999998877776642 22222111110 11234579998764
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
-+.. ....++++...++++....-+
T Consensus 73 Pi~~---~~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 73 PIEA---TEEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred cHHH---HHHHHHHhcccCCCCCEEEec
Confidence 3332 245566666556666544433
No 463
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.62 E-value=59 Score=29.81 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=70.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 232 (319)
+.+...+... -..|+-+|||-=.-...+-. ....+|+-+|. |+.++.=++.++..+.......+++..|+.+-.
T Consensus 83 ~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~ 159 (297)
T COG3315 83 DFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ 159 (297)
T ss_pred HHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence 3444445444 68899999996544333321 12357888887 556666666666654333447899999998432
Q ss_pred ------CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 233 ------FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 233 ------~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+..+.--++++-+++.+++ ++...+-+.++.+..+++..+.+.
T Consensus 160 ~L~~~G~d~~~pt~~iaEGLl~YL~-~~~v~~ll~~I~~~~~~gS~~~~~ 208 (297)
T COG3315 160 ALAAAGFDRSRPTLWIAEGLLMYLP-EEAVDRLLSRIAALSAPGSRVAFD 208 (297)
T ss_pred HHHhcCCCcCCCeEEEeccccccCC-HHHHHHHHHHHHHhCCCCceEEEe
Confidence 2234445777788888884 444444444455545555555443
No 464
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=70.62 E-value=13 Score=34.43 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---CCCccEEEe
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHA 243 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V~~ 243 (319)
..+++|+=||-|.+..-+...| ..-+.++|+++.+++.-+.+.. ...++..|+.++... ...+|+|+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~--------~~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFP--------HGDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCC--------CCceeechHhhcChhhccccCCCEEEe
Confidence 3689999999999999998888 4568999999998888777653 135666777654321 117899987
Q ss_pred ccccc---------CCCCHH-HHHHHHHHhhcCCCe
Q 020988 244 GAALH---------CWPSPS-NAASVFSSSYSLLSI 269 (319)
Q Consensus 244 ~~vl~---------h~~d~~-~~l~el~rvlk~g~~ 269 (319)
..--. -..|+. .++-++.|+++...+
T Consensus 74 GpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P 109 (328)
T COG0270 74 GPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP 109 (328)
T ss_pred CCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC
Confidence 53222 122332 335666776666666
No 465
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=70.56 E-value=26 Score=32.02 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=53.8
Q ss_pred cCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC---CCCCCCCCCCccE
Q 020988 165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRLPFASGFVDA 240 (319)
Q Consensus 165 ~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d---~~~lp~~~~~fD~ 240 (319)
.++.+||-.|+|. |..+.++++......+++++.++...+.+++.- .. .++..+ +..+....+.+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g-------~~--~vi~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMG-------AD--ETVNLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC-------CC--EEEcCCchhhhhhhccCCCccE
Confidence 3788999998875 667666776642237899999988777655421 11 122111 1112212245899
Q ss_pred EEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 241 VHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
|+..... ...++++.+.++++|..-
T Consensus 235 vld~~g~------~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 235 VFEASGA------PAALASALRVVRPGGTVV 259 (339)
T ss_pred EEECCCC------HHHHHHHHHHHhcCCEEE
Confidence 9764321 234667778887776543
No 466
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=70.43 E-value=64 Score=28.13 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=49.7
Q ss_pred cCCCeEEEEcCCcChHHHH----HHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-C------
Q 020988 165 AQGGLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F------ 233 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~----l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~------ 233 (319)
.+++++|=.|+. |..... +++.|. +|+.++.+.+.++...+.+... ..++.++.+|+.+.. +
T Consensus 10 ~~~k~ilItGa~-g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~----~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 10 LSGKTALVTGGS-RGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL----GIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHH
Confidence 356789999854 444444 444465 8999999887777666655432 346778899987642 1
Q ss_pred ---CCCCccEEEecccc
Q 020988 234 ---ASGFVDAVHAGAAL 247 (319)
Q Consensus 234 ---~~~~fD~V~~~~vl 247 (319)
..+..|+|+.+...
T Consensus 83 ~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 83 TLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 01468999887643
No 467
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=70.38 E-value=2.3 Score=39.09 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=18.4
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-.||.||. +. ...+.|+.||+.+
T Consensus 309 S~~C~~cg~---~~-----------~r~~~C~~cg~~~ 332 (364)
T COG0675 309 SKTCPCCGH---LS-----------GRLFKCPRCGFVH 332 (364)
T ss_pred cccccccCC---cc-----------ceeEECCCCCCee
Confidence 357999999 22 2568999999875
No 468
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=70.36 E-value=29 Score=32.20 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=53.4
Q ss_pred ccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeC---CHHHHHHHHHHHhhcCccCCCCeEEEEc---CCCCCCCCCC
Q 020988 164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDF---SENMLRQCYDFIKQDNTILTSNLALVRA---DVCRLPFASG 236 (319)
Q Consensus 164 ~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~---s~~~l~~a~~~~~~~~~~~~~~i~~~~~---d~~~lp~~~~ 236 (319)
..++.+||=+|+|. |.++.++++.. ..+|++++. ++.-++.+++. +.+.+.. +..+.. ..+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----------Ga~~v~~~~~~~~~~~-~~~ 237 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----------GATYVNSSKTPVAEVK-LVG 237 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----------CCEEecCCccchhhhh-hcC
Confidence 34688999999874 66777777664 248999987 56666666542 2222211 111101 124
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
.+|+|+-. ...+ ..+.+..++++++|..-
T Consensus 238 ~~d~vid~-----~g~~-~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 238 EFDLIIEA-----TGVP-PLAFEALPALAPNGVVI 266 (355)
T ss_pred CCCEEEEC-----cCCH-HHHHHHHHHccCCcEEE
Confidence 68888654 3232 25677778888887543
No 469
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=70.17 E-value=2.8 Score=28.09 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=17.3
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccC
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD 94 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg 94 (319)
..+..||.||+.-..+ -.|++||
T Consensus 24 p~l~~C~~cG~~~~~H--------------~vc~~cG 46 (55)
T TIGR01031 24 PTLVVCPNCGEFKLPH--------------RVCPSCG 46 (55)
T ss_pred CcceECCCCCCcccCe--------------eECCccC
Confidence 4667899999965433 4799999
No 470
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=70.05 E-value=3.9 Score=28.30 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=21.5
Q ss_pred eeeccCCCccccc-cCCCCCcccceecCceeeCccCCcccc
Q 020988 60 LFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 60 ~l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
.-.||-|+..... ..+ ...++|..||.+-..
T Consensus 19 ~VkCpdC~N~q~vFsha---------st~V~C~~CG~~l~~ 50 (67)
T COG2051 19 RVKCPDCGNEQVVFSHA---------STVVTCLICGTTLAE 50 (67)
T ss_pred EEECCCCCCEEEEeccC---------ceEEEecccccEEEe
Confidence 3569999985432 222 267899999998743
No 471
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=69.58 E-value=3 Score=26.15 Aligned_cols=24 Identities=29% Similarity=0.695 Sum_probs=17.2
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.||+|...+.... .....+ |||.|
T Consensus 2 ~C~IC~~~~~~~~-----------~~~~l~-C~H~f 25 (44)
T PF13639_consen 2 ECPICLEEFEDGE-----------KVVKLP-CGHVF 25 (44)
T ss_dssp CETTTTCBHHTTS-----------CEEEET-TSEEE
T ss_pred CCcCCChhhcCCC-----------eEEEcc-CCCee
Confidence 5999999886532 344555 89988
No 472
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=69.54 E-value=3 Score=34.59 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=20.7
Q ss_pred eccCCCcccc----ccCCCCCcccceecCceeeCccCCcc
Q 020988 62 SCPICYEPLI----RKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 62 ~CP~C~~~l~----~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.||.|++... ...-+. ...+.-..+.|+.||...
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~--F~evii~sf~C~~CGyk~ 39 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPY--FREVIIMSFECEHCGYRN 39 (160)
T ss_pred cCCCCCCCCEEEEEEecCCC--cceEEEEEEECCCCCCcc
Confidence 4999997421 111111 233334578999999887
No 473
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=68.87 E-value=0.87 Score=30.98 Aligned_cols=23 Identities=35% Similarity=0.943 Sum_probs=15.9
Q ss_pred eccCCCccccccCCCCCcccceecCceee-CccCCcc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKC-RKCDKTY 97 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C-~~Cg~~f 97 (319)
-||+||.++.... ..| +.|+..|
T Consensus 5 HC~~CG~~Ip~~~-------------~fCS~~C~~~~ 28 (59)
T PF09889_consen 5 HCPVCGKPIPPDE-------------SFCSPKCREEY 28 (59)
T ss_pred cCCcCCCcCCcch-------------hhhCHHHHHHH
Confidence 4999998775432 367 5788765
No 474
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=68.86 E-value=2.6 Score=43.78 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=19.5
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
.||.|+++|...+ +=..|.+||..
T Consensus 726 ~Cp~Cg~~l~~~~-----------GC~~C~~CG~s 749 (752)
T PRK08665 726 ACPECGSILEHEE-----------GCVVCHSCGYS 749 (752)
T ss_pred CCCCCCcccEECC-----------CCCcCCCCCCC
Confidence 6999999887765 56789999964
No 475
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=68.59 E-value=5.2 Score=25.85 Aligned_cols=34 Identities=21% Similarity=0.566 Sum_probs=14.3
Q ss_pred eeccCCCcccc-------ccCCCCCcccceecCceeeCccCC
Q 020988 61 FSCPICYEPLI-------RKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 61 l~CP~C~~~l~-------~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
++|++|+--.. ...+.+...+.+. ..+.|+.|+.
T Consensus 2 y~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp-~~w~CP~C~a 42 (47)
T PF00301_consen 2 YQCPVCGYVYDPEKGDPENGIPPGTPFEDLP-DDWVCPVCGA 42 (47)
T ss_dssp EEETTTSBEEETTTBBGGGTB-TT--GGGS--TT-B-TTTSS
T ss_pred cCCCCCCEEEcCCcCCcccCcCCCCCHHHCC-CCCcCcCCCC
Confidence 56788875211 1112233333343 4577888875
No 476
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=68.28 E-value=3.3 Score=39.54 Aligned_cols=46 Identities=30% Similarity=0.354 Sum_probs=41.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
.+|..|-|+-||.|-+...+++.+ ++|++-|.+++++++.+.+++-
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~l 293 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKL 293 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccc
Confidence 568899999999999999999887 5999999999999999988755
No 477
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=68.21 E-value=1.8 Score=32.40 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=25.1
Q ss_pred ccccCeeeccCCCccc-cccCCCCCcccceecCceeeCccCCcc
Q 020988 55 ELEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 55 ~~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+.+..--.||.|+..- ...+-...+.++-+...++|-+|+|++
T Consensus 60 nv~~t~~~Cp~Cgh~rayF~qlQtRSADEPmT~FYkC~~C~~~W 103 (105)
T KOG2906|consen 60 NVDQTEATCPTCGHERAYFMQLQTRSADEPMTTFYKCCKCKHRW 103 (105)
T ss_pred chhhccCcCCCCCCCceEEEEeeeccCCCcHhHhhhhhcccccc
Confidence 3455667899999831 000011122233444678999999987
No 478
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=68.09 E-value=3.3 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=17.6
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCC
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
-++|+.||..+........ .....|+.||.
T Consensus 5 ey~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~ 34 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQSISE------DDPVPCPECGS 34 (42)
T ss_pred EEEeCCCCCEEEEEEEcCC------CCCCcCCCCCC
Confidence 4788999875433221000 14567988887
No 479
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=68.02 E-value=1.6 Score=33.99 Aligned_cols=57 Identities=18% Similarity=0.291 Sum_probs=28.3
Q ss_pred CcchhhhhhhhhhhccCCcccccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 28 LPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.|-.+|++-. ++...+...+..-.-........|+.|+....... ..+.||.||...
T Consensus 40 ~pe~L~f~f~--~~~~~T~~e~a~L~Ie~~p~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 40 EPEALRFAFE--VLAEGTILEGAELEIEEVPARARCRDCGHEFEPDE-----------FDFSCPRCGSPD 96 (113)
T ss_dssp -HHHHHHHHH--HHHCCSTTTT-EEEEEEE--EEEETTTS-EEECHH-----------CCHH-SSSSSS-
T ss_pred CHHHHHHHHH--HHhCCCCccCCEEEEEecCCcEECCCCCCEEecCC-----------CCCCCcCCcCCC
Confidence 4445555541 11222222333333344556889999999765543 236799999864
No 480
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=68.00 E-value=2.9 Score=38.54 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=20.5
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
...||.|+++-...+. ..+.+.|.+||.+.
T Consensus 11 ~~~Cp~Cg~~~iv~d~--------~~Ge~vC~~CG~Vl 40 (310)
T PRK00423 11 KLVCPECGSDKLIYDY--------ERGEIVCADCGLVI 40 (310)
T ss_pred CCcCcCCCCCCeeEEC--------CCCeEeecccCCcc
Confidence 4689999984222111 24778999999876
No 481
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=67.90 E-value=4.5 Score=24.15 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=15.2
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCC
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
..+|++||.-..-.. ..-.|+.||+
T Consensus 2 ~~~C~~CG~i~~g~~-----------~p~~CP~Cg~ 26 (34)
T cd00729 2 VWVCPVCGYIHEGEE-----------APEKCPICGA 26 (34)
T ss_pred eEECCCCCCEeECCc-----------CCCcCcCCCC
Confidence 467888886433221 1237888886
No 482
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=67.84 E-value=3.9 Score=26.06 Aligned_cols=11 Identities=36% Similarity=0.754 Sum_probs=8.7
Q ss_pred eccCCCccccc
Q 020988 62 SCPICYEPLIR 72 (319)
Q Consensus 62 ~CP~C~~~l~~ 72 (319)
.||.||+.|..
T Consensus 4 ~C~~Cg~~l~~ 14 (47)
T PF13005_consen 4 ACPDCGGELKE 14 (47)
T ss_pred cCCCCCceeeE
Confidence 69999987754
No 483
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=67.71 E-value=24 Score=31.80 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=54.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.+++.-.|+|+-.|.++.++.+++- .|+++|.-+ |.+ . +. ..+.++....|-..........|-.+|-
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~---s-L~-----dtg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQ---S-LM-----DTGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhh---h-hh-----cccceeeeeccCcccccCCCCCceEEee
Confidence 5789999999999999999999876 999999754 221 1 11 1356777777766653334567776664
Q ss_pred ccccCCCCHHHHHHHHHH
Q 020988 245 AALHCWPSPSNAASVFSS 262 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~r 262 (319)
. +..|.+.-+.|..
T Consensus 278 m----VEkP~rv~~li~~ 291 (358)
T COG2933 278 M----VEKPARVAALIAK 291 (358)
T ss_pred h----hcCcHHHHHHHHH
Confidence 3 3345554444443
No 484
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=67.58 E-value=40 Score=30.63 Aligned_cols=86 Identities=10% Similarity=-0.006 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
++.++|=+|||. |.++.++++......++++|.++..++.+.+. .++ |..+. ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~------------~~i--~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY------------EVL--DPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc------------ccc--Chhhc--cCCCCCEEEEC
Confidence 567899899874 77777777764333577889888766655431 011 11110 13468988653
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
...+ ..+....++++++|..-.+
T Consensus 208 -----~G~~-~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 208 -----SGDP-SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred -----CCCH-HHHHHHHHhhhcCcEEEEE
Confidence 3332 3456677788887765544
No 485
>PRK11032 hypothetical protein; Provisional
Probab=67.46 E-value=4 Score=33.78 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=27.6
Q ss_pred ccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988 53 TLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 53 ~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
+...-...|+|-.||..+....+ ..+-.|+.||+.+..
T Consensus 117 GEvvg~G~LvC~~Cg~~~~~~~p---------~~i~pCp~C~~~~F~ 154 (160)
T PRK11032 117 GEVVGLGNLVCEKCHHHLAFYTP---------EVLPLCPKCGHDQFQ 154 (160)
T ss_pred ceeeecceEEecCCCCEEEecCC---------CcCCCCCCCCCCeee
Confidence 44556678999999997766554 134579999998743
No 486
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=67.46 E-value=4.6 Score=31.41 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=24.6
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccccCC
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~ 101 (319)
|.-||.|++-|..... .....+.|+.||..+....
T Consensus 2 m~FCp~Cgsll~p~~~-------~~~~~l~C~kCgye~~~~~ 36 (113)
T COG1594 2 MRFCPKCGSLLYPKKD-------DEGGKLVCRKCGYEEEASN 36 (113)
T ss_pred ccccCCccCeeEEeEc-------CCCcEEECCCCCcchhccc
Confidence 4569999997765421 0124789999999996554
No 487
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=67.34 E-value=2.2 Score=38.95 Aligned_cols=33 Identities=27% Similarity=0.718 Sum_probs=14.2
Q ss_pred eeeccCCCcc-c---cccCCCCCcccceecCceeeCccCCccc
Q 020988 60 LFSCPICYEP-L---IRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 60 ~l~CP~C~~~-l---~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
--.||+||+. . ...+. . .+ ..++.|.-|++.+.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~-~--~G---~R~L~Cs~C~t~W~ 208 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGE-R--EG---KRYLHCSLCGTEWR 208 (290)
T ss_dssp -SS-TTT---EEEEEEE------------EEEEEETTT--EEE
T ss_pred CCcCCCCCCcCceEEEecCC-C--Cc---cEEEEcCCCCCeee
Confidence 3689999993 1 11211 0 01 26788999998883
No 488
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=67.25 E-value=5.2 Score=27.15 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=21.8
Q ss_pred eeeccCCCcccc-ccCCCCCcccceecCceeeCccCCccccC
Q 020988 60 LFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 60 ~l~CP~C~~~l~-~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
-.+||.|+.... ...+ ...+.|..||..-..+
T Consensus 11 ~VkCp~C~n~q~vFsha---------~t~V~C~~Cg~~L~~P 43 (59)
T PRK00415 11 KVKCPDCGNEQVVFSHA---------STVVRCLVCGKTLAEP 43 (59)
T ss_pred EEECCCCCCeEEEEecC---------CcEEECcccCCCcccC
Confidence 457999998542 2222 2678999999987443
No 489
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=66.95 E-value=3.6 Score=27.50 Aligned_cols=24 Identities=29% Similarity=0.803 Sum_probs=17.3
Q ss_pred eccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 62 ~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.||+|...+-.. ..+.|+.||..+
T Consensus 1 ~Cpv~~~~~~~~------------v~~~Cp~cGipt 24 (55)
T PF13824_consen 1 LCPVCKKDLPAH------------VNFECPDCGIPT 24 (55)
T ss_pred CCCCCccccccc------------cCCcCCCCCCcC
Confidence 499999976222 457899999754
No 490
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=66.86 E-value=20 Score=27.64 Aligned_cols=82 Identities=18% Similarity=0.064 Sum_probs=50.5
Q ss_pred CcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-----C-CCCCCccEEEecccccC
Q 020988 176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASGFVDAVHAGAALHC 249 (319)
Q Consensus 176 G~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~~fD~V~~~~vl~h 249 (319)
|.|.++.++++... .+|+++|.++.-++.+++.- --.++..+-.++ . ...+.+|+|+-.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~G---------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~----- 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELG---------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDC----- 65 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT---------ESEEEETTTSSHHHHHHHHTTTSSEEEEEES-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhc---------ccccccccccccccccccccccccceEEEEe-----
Confidence 35777778887754 79999999999988887631 112222222211 1 223579999654
Q ss_pred CCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 250 WPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 250 ~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
... ...+++...+++++|..-.+
T Consensus 66 ~g~-~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 66 VGS-GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp SSS-HHHHHHHHHHEEEEEEEEEE
T ss_pred cCc-HHHHHHHHHHhccCCEEEEE
Confidence 433 34577777787777654444
No 491
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=66.46 E-value=6 Score=36.15 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCcChHHH-HHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 166 QGGLLVDVSCGSGLFSR-KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~-~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.+..|+|+=+|-|+|+. .+...+ ...|+++|.+|..++..++.++.++ ...+..++.+|-... -++...|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~--V~~r~~i~~gd~R~~-~~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANN--VMDRCRITEGDNRNP-KPRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcc--hHHHHHhhhcccccc-Cccccchheeec
Confidence 45789999999999998 555555 4689999999999999999887642 122333444554443 345778888765
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
. +|.-++----.-++||+-|-
T Consensus 270 L----lPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 270 L----LPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred c----ccccccchHHHHHHhhhcCC
Confidence 3 33333222334455666553
No 492
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=66.23 E-value=4.4 Score=25.21 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=12.9
Q ss_pred eeccCCCcc--cc-ccCCCCCcccceecCceeeCccCC
Q 020988 61 FSCPICYEP--LI-RKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 61 l~CP~C~~~--l~-~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
..||+|++. +. ..+ .-..+.+.|..|+.
T Consensus 4 ~pCP~CGG~DrFri~~d-------~~~~G~~~C~~C~~ 34 (40)
T PF08273_consen 4 GPCPICGGKDRFRIFDD-------KDGRGTWICRQCGG 34 (40)
T ss_dssp E--TTTT-TTTEEEETT-----------S-EEETTTTB
T ss_pred CCCCCCcCccccccCcC-------cccCCCEECCCCCC
Confidence 369999983 22 111 11237889999943
No 493
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=65.83 E-value=3.7 Score=32.15 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=10.5
Q ss_pred CceeeCccCCccc
Q 020988 86 SGFKCRKCDKTYS 98 (319)
Q Consensus 86 ~~~~C~~Cg~~f~ 98 (319)
..+.|+.||..|.
T Consensus 30 ~~~~C~~CGe~~~ 42 (127)
T TIGR03830 30 PGWYCPACGEELL 42 (127)
T ss_pred eeeECCCCCCEEE
Confidence 4678999999873
No 494
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=65.58 E-value=17 Score=31.85 Aligned_cols=70 Identities=10% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
+.+..........-|.+||.|.|..++.+.+.+- .+...++.+...+.-.+-..+. ...++.+..+|+..
T Consensus 40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EA----a~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEA----APGKLRIHHGDVLR 109 (326)
T ss_pred HHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhc----CCcceEEeccccce
Confidence 3444444445668899999999999999998863 4677777776655444332222 13466666667644
No 495
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=65.47 E-value=47 Score=30.78 Aligned_cols=102 Identities=18% Similarity=0.115 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
++++|.=||.|. |.....++- +-..+|+-+|+|.+-+++....+ ..++.....+...+.-.-...|+|+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~-glgA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAI-GLGADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHh-ccCCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 456788899886 665554443 33469999999998888877765 346666666655554333578998876
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
=-+---..|.-..+++.+.+|||...--+-+
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 6666666788888999999999876655544
No 496
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=65.39 E-value=3.6 Score=37.16 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=22.8
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
-.||.|+.++....-. .++.+.|+.|...++.
T Consensus 236 ~pC~~Cg~~I~~~~~~-------gR~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 236 QPCPRCGTPIEKIVVG-------GRGTHFCPQCQPLRPL 267 (269)
T ss_pred CCCCcCCCeeEEEEEC-------CCCcEECCCCcCCCCC
Confidence 3699999987543211 1578999999987653
No 497
>PRK05650 short chain dehydrogenase; Provisional
Probab=65.31 E-value=93 Score=27.35 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=47.6
Q ss_pred eEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----------CC
Q 020988 169 LLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----------AS 235 (319)
Q Consensus 169 ~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----------~~ 235 (319)
++|-.|+..|. ++..+.+.|. +|+.++.+...++...+.+... ..++.++.+|+.+... .-
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 75 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREA----GGDGFYQRCDVRDYSQLTALAQACEEKW 75 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57777765442 4455566666 8999999887766665555432 3467788889876320 11
Q ss_pred CCccEEEeccccc
Q 020988 236 GFVDAVHAGAALH 248 (319)
Q Consensus 236 ~~fD~V~~~~vl~ 248 (319)
+.+|+|+.+....
T Consensus 76 ~~id~lI~~ag~~ 88 (270)
T PRK05650 76 GGIDVIVNNAGVA 88 (270)
T ss_pred CCCCEEEECCCCC
Confidence 4689998876543
No 498
>PRK08339 short chain dehydrogenase; Provisional
Probab=65.27 E-value=43 Score=29.59 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----C----
Q 020988 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 233 (319)
Q Consensus 166 ~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 233 (319)
.++++|-.|++.|. +...+++.|. +|+.+|.+++.++...+.+... ...++.++.+|+.+.. +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSE---SNVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhh---cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46788888887653 5566666676 8999999988777666655432 1246778888987642 1
Q ss_pred CCCCccEEEecccc
Q 020988 234 ASGFVDAVHAGAAL 247 (319)
Q Consensus 234 ~~~~fD~V~~~~vl 247 (319)
.-+..|+++.+...
T Consensus 82 ~~g~iD~lv~nag~ 95 (263)
T PRK08339 82 NIGEPDIFFFSTGG 95 (263)
T ss_pred hhCCCcEEEECCCC
Confidence 11468988876543
No 499
>PHA02942 putative transposase; Provisional
Probab=64.90 E-value=4.3 Score=38.68 Aligned_cols=27 Identities=26% Similarity=0.634 Sum_probs=18.6
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
-.||.||...... ....+.|++||+..
T Consensus 326 q~Cs~CG~~~~~l----------~~r~f~C~~CG~~~ 352 (383)
T PHA02942 326 VSCPKCGHKMVEI----------AHRYFHCPSCGYEN 352 (383)
T ss_pred ccCCCCCCccCcC----------CCCEEECCCCCCEe
Confidence 5799999843211 12468999999864
No 500
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=64.79 E-value=18 Score=33.33 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=61.9
Q ss_pred CeEEEEcCCcChHHHHHHhhC--------------------CCCeEEEEeCCHH--HHHHHHHHHhhc-----------C
Q 020988 168 GLLVDVSCGSGLFSRKFAKSG--------------------TYSGVVALDFSEN--MLRQCYDFIKQD-----------N 214 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g--------------------~~~~v~gvD~s~~--~l~~a~~~~~~~-----------~ 214 (319)
.+||-||.|.|.=...++... +..+++.||+.+- .+......+... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999986444443322 1138999999763 344444433322 0
Q ss_pred ---ccCCCCeEEEEcCCCCCCCCC-------CCccEEEecccccCC-----CCHHHHHHHHHHhhcCCCeeE
Q 020988 215 ---TILTSNLALVRADVCRLPFAS-------GFVDAVHAGAALHCW-----PSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 215 ---~~~~~~i~~~~~d~~~lp~~~-------~~fD~V~~~~vl~h~-----~d~~~~l~el~rvlk~g~~~g 271 (319)
....-++.|.+.|+..+...+ ...|+|+..++++-+ ....+++..+...+++|-.+-
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLL 239 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLL 239 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEE
Confidence 011235788999987765321 357888888877643 233455666666666665433
Done!