Query 020988
Match_columns 319
No_of_seqs 299 out of 3065
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e2x_A TCAB9; kijanose, tetron 99.8 1.3E-20 4.5E-25 179.0 8.0 112 156-274 97-208 (416)
2 1p91_A Ribosomal RNA large sub 99.8 7.8E-19 2.7E-23 156.7 17.3 175 61-277 3-181 (269)
3 4hg2_A Methyltransferase type 99.8 9.4E-19 3.2E-23 155.8 12.3 112 151-276 26-137 (257)
4 1vl5_A Unknown conserved prote 99.8 2.4E-18 8.2E-23 152.8 13.9 116 155-275 26-141 (260)
5 4gek_A TRNA (CMO5U34)-methyltr 99.7 2.9E-17 1E-21 146.5 15.3 106 164-273 68-177 (261)
6 1xxl_A YCGJ protein; structura 99.7 4E-17 1.4E-21 143.4 15.5 115 156-275 11-125 (239)
7 1pjz_A Thiopurine S-methyltran 99.7 9.1E-18 3.1E-22 144.1 11.1 112 162-275 18-141 (203)
8 2o57_A Putative sarcosine dime 99.7 6.6E-17 2.3E-21 146.2 17.2 117 155-275 67-188 (297)
9 1nkv_A Hypothetical protein YJ 99.7 3.3E-17 1.1E-21 144.8 14.5 120 152-275 22-141 (256)
10 3jwh_A HEN1; methyltransferase 99.7 6.3E-17 2.2E-21 139.7 15.3 114 155-268 18-135 (217)
11 3jwg_A HEN1, methyltransferase 99.7 7.3E-17 2.5E-21 139.4 15.2 113 156-268 19-135 (219)
12 3dlc_A Putative S-adenosyl-L-m 99.7 5.4E-17 1.9E-21 139.4 14.2 115 155-273 33-147 (219)
13 3bus_A REBM, methyltransferase 99.7 7.3E-17 2.5E-21 144.0 15.4 117 156-275 51-167 (273)
14 3dh0_A SAM dependent methyltra 99.7 5.6E-17 1.9E-21 140.0 13.7 117 156-275 27-144 (219)
15 3kkz_A Uncharacterized protein 99.7 9.8E-17 3.3E-21 143.0 14.7 120 152-275 31-151 (267)
16 2gb4_A Thiopurine S-methyltran 99.7 9.3E-17 3.2E-21 142.5 14.1 109 165-275 67-192 (252)
17 3g5t_A Trans-aconitate 3-methy 99.7 1.6E-16 5.5E-21 144.1 15.9 123 151-276 22-151 (299)
18 3f4k_A Putative methyltransfer 99.7 1.3E-16 4.5E-21 141.0 14.8 121 151-275 30-151 (257)
19 3g5l_A Putative S-adenosylmeth 99.7 1E-16 3.6E-21 141.5 13.4 113 156-275 34-146 (253)
20 2p7i_A Hypothetical protein; p 99.7 6.4E-17 2.2E-21 141.7 11.8 108 158-275 33-142 (250)
21 3ege_A Putative methyltransfer 99.7 8.5E-17 2.9E-21 143.2 12.3 110 155-276 23-132 (261)
22 3ofk_A Nodulation protein S; N 99.7 1.2E-16 4.2E-21 137.6 12.9 111 156-274 41-154 (216)
23 3mgg_A Methyltransferase; NYSG 99.7 1.2E-16 4.1E-21 143.0 13.2 109 163-274 34-142 (276)
24 3ujc_A Phosphoethanolamine N-m 99.7 1.2E-16 4.1E-21 141.6 13.1 116 154-275 43-160 (266)
25 3dtn_A Putative methyltransfer 99.7 1.8E-16 6.2E-21 138.2 14.0 115 155-275 32-149 (234)
26 4htf_A S-adenosylmethionine-de 99.7 1.1E-16 3.8E-21 144.0 12.7 106 166-275 68-174 (285)
27 2yqz_A Hypothetical protein TT 99.7 2.5E-16 8.7E-21 139.4 14.6 105 163-273 36-140 (263)
28 3hnr_A Probable methyltransfer 99.7 2E-16 6.8E-21 136.6 13.3 109 157-275 36-146 (220)
29 3l8d_A Methyltransferase; stru 99.7 3E-16 1E-20 137.3 14.3 110 156-275 45-154 (242)
30 3h2b_A SAM-dependent methyltra 99.7 1.5E-16 5.2E-21 135.7 12.1 108 157-275 33-142 (203)
31 2xvm_A Tellurite resistance pr 99.7 6.6E-16 2.2E-20 130.9 15.9 112 157-274 23-136 (199)
32 2p35_A Trans-aconitate 2-methy 99.7 2.5E-16 8.5E-21 139.3 12.8 109 158-275 25-133 (259)
33 3vc1_A Geranyl diphosphate 2-C 99.7 4.8E-16 1.7E-20 141.9 14.8 115 156-275 106-222 (312)
34 3gu3_A Methyltransferase; alph 99.7 3.9E-16 1.3E-20 140.6 13.9 109 163-276 19-128 (284)
35 3ccf_A Cyclopropane-fatty-acyl 99.7 2.1E-16 7.1E-21 141.9 10.9 108 157-275 48-155 (279)
36 3hem_A Cyclopropane-fatty-acyl 99.7 9.1E-16 3.1E-20 139.3 15.2 115 156-276 62-185 (302)
37 3lcc_A Putative methyl chlorid 99.7 4.6E-16 1.6E-20 135.9 12.3 105 166-275 66-172 (235)
38 3bkw_A MLL3908 protein, S-aden 99.7 5.8E-16 2E-20 135.4 12.9 113 156-275 33-145 (243)
39 3thr_A Glycine N-methyltransfe 99.7 4.5E-16 1.5E-20 140.4 12.5 122 152-275 43-176 (293)
40 2gs9_A Hypothetical protein TT 99.7 1E-15 3.5E-20 131.3 13.9 99 166-276 36-134 (211)
41 2pxx_A Uncharacterized protein 99.7 5.9E-16 2E-20 132.7 12.4 107 165-277 41-162 (215)
42 2p8j_A S-adenosylmethionine-de 99.7 1E-15 3.5E-20 130.9 13.7 107 164-276 21-130 (209)
43 3ou2_A SAM-dependent methyltra 99.7 1.2E-15 4.2E-20 131.1 14.1 109 157-275 36-147 (218)
44 2aot_A HMT, histamine N-methyl 99.7 3.4E-16 1.2E-20 141.6 10.8 110 165-276 51-174 (292)
45 1kpg_A CFA synthase;, cyclopro 99.7 1.9E-15 6.5E-20 135.9 15.6 113 157-276 55-170 (287)
46 4fsd_A Arsenic methyltransfera 99.6 1E-15 3.5E-20 143.9 13.5 112 164-275 81-204 (383)
47 3i9f_A Putative type 11 methyl 99.6 5.5E-16 1.9E-20 128.5 10.2 104 159-275 10-113 (170)
48 1xtp_A LMAJ004091AAA; SGPP, st 99.6 7.9E-16 2.7E-20 135.6 11.0 111 158-274 85-197 (254)
49 3sm3_A SAM-dependent methyltra 99.6 1.9E-15 6.4E-20 131.3 13.2 109 165-275 29-142 (235)
50 3bkx_A SAM-dependent methyltra 99.6 2.7E-15 9.2E-20 133.9 14.4 118 156-275 33-160 (275)
51 3e05_A Precorrin-6Y C5,15-meth 99.6 1.6E-14 5.3E-19 123.5 17.7 118 152-275 26-143 (204)
52 1y8c_A S-adenosylmethionine-de 99.6 2E-15 6.7E-20 132.1 12.3 110 156-272 25-140 (246)
53 2ex4_A Adrenal gland protein A 99.6 1.6E-15 5.6E-20 133.0 11.5 106 166-275 79-186 (241)
54 3e23_A Uncharacterized protein 99.6 1.7E-15 5.7E-20 130.1 11.3 99 165-275 42-142 (211)
55 2fk8_A Methoxy mycolic acid sy 99.6 4.6E-15 1.6E-19 135.5 14.7 113 157-276 81-196 (318)
56 3m70_A Tellurite resistance pr 99.6 4.6E-15 1.6E-19 133.4 14.5 111 158-275 112-224 (286)
57 1ve3_A Hypothetical protein PH 99.6 3E-15 1E-19 129.6 12.6 104 166-275 38-143 (227)
58 3fpf_A Mtnas, putative unchara 99.6 8.2E-15 2.8E-19 131.9 15.8 136 131-274 76-222 (298)
59 3htx_A HEN1; HEN1, small RNA m 99.6 5.3E-15 1.8E-19 147.7 15.9 113 155-267 710-828 (950)
60 3dli_A Methyltransferase; PSI- 99.6 1.8E-15 6.2E-20 132.6 11.1 99 165-276 40-142 (240)
61 3pfg_A N-methyltransferase; N, 99.6 8.8E-15 3E-19 129.9 14.1 99 165-277 49-151 (263)
62 2kw5_A SLR1183 protein; struct 99.6 1.4E-15 4.8E-20 129.6 8.2 103 165-276 29-133 (202)
63 3orh_A Guanidinoacetate N-meth 99.6 1.4E-15 4.6E-20 133.6 7.9 103 164-271 58-167 (236)
64 2avn_A Ubiquinone/menaquinone 99.6 7.6E-15 2.6E-19 130.3 12.6 100 166-276 54-154 (260)
65 3ocj_A Putative exported prote 99.6 4.3E-15 1.5E-19 135.1 10.7 108 164-274 116-227 (305)
66 3hm2_A Precorrin-6Y C5,15-meth 99.6 1.3E-14 4.3E-19 120.8 12.7 113 156-275 15-128 (178)
67 3ggd_A SAM-dependent methyltra 99.6 5.6E-15 1.9E-19 129.7 10.6 105 164-276 54-165 (245)
68 3g2m_A PCZA361.24; SAM-depende 99.6 9.9E-15 3.4E-19 132.2 12.4 119 154-276 71-192 (299)
69 2qe6_A Uncharacterized protein 99.6 4.1E-14 1.4E-18 127.0 16.2 107 165-276 76-198 (274)
70 3njr_A Precorrin-6Y methylase; 99.6 9.4E-14 3.2E-18 119.1 17.0 113 154-275 43-155 (204)
71 3p9n_A Possible methyltransfer 99.6 2.6E-14 8.8E-19 120.7 13.0 104 165-272 43-151 (189)
72 1dus_A MJ0882; hypothetical pr 99.6 3.8E-14 1.3E-18 119.1 13.7 117 154-276 40-159 (194)
73 1zx0_A Guanidinoacetate N-meth 99.6 5E-15 1.7E-19 129.6 8.5 105 164-273 58-169 (236)
74 3g07_A 7SK snRNA methylphospha 99.6 6.6E-15 2.3E-19 133.2 9.5 105 166-270 46-216 (292)
75 3lbf_A Protein-L-isoaspartate 99.6 4E-14 1.4E-18 121.3 13.6 108 154-272 65-172 (210)
76 3mti_A RRNA methylase; SAM-dep 99.6 1.3E-14 4.5E-19 121.9 10.0 106 165-275 21-136 (185)
77 3cc8_A Putative methyltransfer 99.6 1.6E-14 5.4E-19 124.9 10.7 105 158-275 25-131 (230)
78 1ri5_A MRNA capping enzyme; me 99.6 3.2E-14 1.1E-18 128.1 13.1 108 165-275 63-175 (298)
79 3bxo_A N,N-dimethyltransferase 99.6 5.7E-14 2E-18 122.4 14.3 100 165-278 39-142 (239)
80 2vdw_A Vaccinia virus capping 99.6 2E-14 6.7E-19 130.8 11.7 109 166-275 48-170 (302)
81 1vlm_A SAM-dependent methyltra 99.5 5.3E-14 1.8E-18 121.6 13.1 94 166-275 47-140 (219)
82 1yzh_A TRNA (guanine-N(7)-)-me 99.5 1.1E-13 3.6E-18 119.3 14.8 107 165-274 40-156 (214)
83 2a14_A Indolethylamine N-methy 99.5 1.1E-14 3.6E-19 129.8 8.8 110 163-273 52-196 (263)
84 3d2l_A SAM-dependent methyltra 99.5 4.7E-14 1.6E-18 123.2 12.4 102 165-274 32-137 (243)
85 3cgg_A SAM-dependent methyltra 99.5 7.2E-14 2.5E-18 117.5 12.9 100 165-274 45-147 (195)
86 3e8s_A Putative SAM dependent 99.5 2.1E-14 7.1E-19 123.8 9.7 108 156-275 42-153 (227)
87 2fca_A TRNA (guanine-N(7)-)-me 99.5 6.8E-14 2.3E-18 120.8 12.8 107 165-274 37-153 (213)
88 3iv6_A Putative Zn-dependent a 99.5 6.4E-14 2.2E-18 124.5 12.4 107 156-274 35-148 (261)
89 2g72_A Phenylethanolamine N-me 99.5 1.2E-14 4.2E-19 131.0 7.8 117 156-273 59-214 (289)
90 3dxy_A TRNA (guanine-N(7)-)-me 99.5 3.7E-14 1.3E-18 123.0 10.4 107 165-274 33-150 (218)
91 3mq2_A 16S rRNA methyltransfer 99.5 2.4E-14 8.4E-19 123.5 9.2 111 161-272 22-138 (218)
92 2fyt_A Protein arginine N-meth 99.5 1.2E-13 4.2E-18 127.7 13.8 112 156-271 54-168 (340)
93 1xdz_A Methyltransferase GIDB; 99.5 8.2E-14 2.8E-18 122.3 12.0 101 165-272 69-172 (240)
94 3dp7_A SAM-dependent methyltra 99.5 2.2E-13 7.5E-18 127.0 15.2 107 165-275 178-288 (363)
95 3bgv_A MRNA CAP guanine-N7 met 99.5 1.8E-13 6.1E-18 124.8 14.1 109 166-275 34-156 (313)
96 1wzn_A SAM-dependent methyltra 99.5 3.5E-13 1.2E-17 118.6 15.4 101 164-271 39-142 (252)
97 1x19_A CRTF-related protein; m 99.5 2.4E-13 8.3E-18 126.4 15.0 115 156-275 180-296 (359)
98 2i62_A Nicotinamide N-methyltr 99.5 2.2E-14 7.7E-19 126.9 7.7 109 165-274 55-198 (265)
99 3gwz_A MMCR; methyltransferase 99.5 3.5E-13 1.2E-17 125.9 15.9 113 158-275 194-308 (369)
100 1nt2_A Fibrillarin-like PRE-rR 99.5 1.7E-13 5.8E-18 118.1 12.5 104 163-274 54-161 (210)
101 3q7e_A Protein arginine N-meth 99.5 1.6E-13 5.3E-18 127.4 13.1 104 163-270 63-169 (349)
102 3ckk_A TRNA (guanine-N(7)-)-me 99.5 1.3E-13 4.3E-18 121.0 11.7 109 165-273 45-167 (235)
103 3i53_A O-methyltransferase; CO 99.5 1.6E-13 5.5E-18 126.2 12.9 106 165-275 168-275 (332)
104 2yxd_A Probable cobalt-precorr 99.5 3.3E-13 1.1E-17 112.3 13.6 110 154-275 23-132 (183)
105 1qzz_A RDMB, aclacinomycin-10- 99.5 2.2E-13 7.4E-18 127.2 13.8 114 157-275 173-288 (374)
106 2r3s_A Uncharacterized protein 99.5 2.1E-13 7.3E-18 125.2 13.5 115 157-275 154-272 (335)
107 4dcm_A Ribosomal RNA large sub 99.5 2E-13 7E-18 127.7 13.5 122 153-275 209-335 (375)
108 2pwy_A TRNA (adenine-N(1)-)-me 99.5 3.6E-13 1.2E-17 118.8 14.4 114 154-275 84-199 (258)
109 4azs_A Methyltransferase WBDD; 99.5 3.4E-14 1.2E-18 140.1 8.4 106 165-275 65-174 (569)
110 1fbn_A MJ fibrillarin homologu 99.5 1.8E-13 6.2E-18 119.3 12.2 100 163-273 71-177 (230)
111 3eey_A Putative rRNA methylase 99.5 1E-13 3.5E-18 117.5 10.3 111 163-275 19-140 (197)
112 3q87_B N6 adenine specific DNA 99.5 2.6E-13 8.7E-18 112.9 12.4 107 152-275 7-124 (170)
113 3mb5_A SAM-dependent methyltra 99.5 2.9E-13 9.9E-18 119.5 13.4 115 153-275 80-195 (255)
114 1dl5_A Protein-L-isoaspartate 99.5 2.1E-13 7.1E-18 124.8 12.8 110 155-273 64-174 (317)
115 3uwp_A Histone-lysine N-methyl 99.5 1E-13 3.4E-18 129.6 10.8 117 155-273 162-287 (438)
116 4df3_A Fibrillarin-like rRNA/T 99.5 2.5E-13 8.7E-18 118.5 12.5 106 162-274 73-182 (233)
117 2fpo_A Methylase YHHF; structu 99.5 4.3E-13 1.5E-17 114.7 13.5 116 156-277 43-160 (202)
118 1vbf_A 231AA long hypothetical 99.5 3.7E-13 1.3E-17 117.0 13.3 107 155-274 59-165 (231)
119 3m33_A Uncharacterized protein 99.5 1.2E-13 4.2E-18 120.0 10.2 91 165-271 47-139 (226)
120 3gdh_A Trimethylguanosine synt 99.5 1.3E-14 4.4E-19 127.1 3.9 101 164-269 76-176 (241)
121 2yxe_A Protein-L-isoaspartate 99.5 3.6E-13 1.2E-17 115.7 12.9 111 155-274 66-177 (215)
122 3dmg_A Probable ribosomal RNA 99.5 2.8E-13 9.4E-18 127.0 12.9 105 165-275 232-341 (381)
123 2ift_A Putative methylase HI07 99.5 2.7E-13 9.3E-18 115.9 11.5 114 157-276 43-162 (201)
124 3lpm_A Putative methyltransfer 99.5 2.1E-13 7.1E-18 121.1 11.0 115 157-274 39-176 (259)
125 1yb2_A Hypothetical protein TA 99.5 3E-13 1E-17 121.2 11.9 111 156-275 100-212 (275)
126 1jsx_A Glucose-inhibited divis 99.5 5E-13 1.7E-17 114.1 12.8 99 166-272 65-163 (207)
127 1g6q_1 HnRNP arginine N-methyl 99.5 6.5E-13 2.2E-17 122.1 14.3 110 157-270 29-141 (328)
128 3mcz_A O-methyltransferase; ad 99.5 3.4E-13 1.2E-17 124.8 12.5 114 159-275 171-288 (352)
129 3evz_A Methyltransferase; NYSG 99.5 1.2E-12 4E-17 113.7 14.9 107 164-275 53-180 (230)
130 2ip2_A Probable phenazine-spec 99.5 4.3E-13 1.5E-17 123.3 12.7 114 156-275 158-273 (334)
131 3g89_A Ribosomal RNA small sub 99.4 2.9E-13 1E-17 119.7 10.6 101 165-272 79-182 (249)
132 1tw3_A COMT, carminomycin 4-O- 99.4 6.7E-13 2.3E-17 123.3 13.3 111 158-273 175-287 (360)
133 1l3i_A Precorrin-6Y methyltran 99.4 5.8E-13 2E-17 111.6 11.5 115 153-275 20-135 (192)
134 3fzg_A 16S rRNA methylase; met 99.4 6.8E-14 2.3E-18 117.5 5.4 112 154-275 39-150 (200)
135 1af7_A Chemotaxis receptor met 99.4 4.1E-13 1.4E-17 120.3 10.8 126 147-275 85-250 (274)
136 3u81_A Catechol O-methyltransf 99.4 3.3E-13 1.1E-17 116.9 9.7 114 154-270 46-166 (221)
137 3r0q_C Probable protein argini 99.4 6.2E-13 2.1E-17 124.6 12.2 105 161-270 58-165 (376)
138 3grz_A L11 mtase, ribosomal pr 99.4 7.6E-13 2.6E-17 112.9 11.7 101 164-273 58-158 (205)
139 3ntv_A MW1564 protein; rossman 99.4 6.8E-13 2.3E-17 115.9 11.6 112 154-270 59-172 (232)
140 2ozv_A Hypothetical protein AT 99.4 1.2E-12 4.2E-17 116.4 13.4 117 157-275 27-171 (260)
141 2esr_A Methyltransferase; stru 99.4 3.1E-13 1.1E-17 112.6 9.0 118 156-278 20-139 (177)
142 1i9g_A Hypothetical protein RV 99.4 1E-12 3.5E-17 117.5 12.9 116 154-275 87-204 (280)
143 1ws6_A Methyltransferase; stru 99.4 3.9E-13 1.3E-17 110.8 9.1 114 156-278 29-148 (171)
144 2pjd_A Ribosomal RNA small sub 99.4 2.7E-13 9.2E-18 125.4 8.7 117 153-275 183-304 (343)
145 2fhp_A Methylase, putative; al 99.4 5.4E-13 1.9E-17 111.7 9.7 118 154-276 31-153 (187)
146 4dzr_A Protein-(glutamine-N5) 99.4 5.4E-14 1.9E-18 120.2 3.4 114 157-275 20-165 (215)
147 2vdv_E TRNA (guanine-N(7)-)-me 99.4 1.3E-12 4.5E-17 115.0 12.2 104 165-273 48-172 (246)
148 1jg1_A PIMT;, protein-L-isoasp 99.4 1.2E-12 4E-17 114.4 11.7 108 155-273 80-188 (235)
149 2b3t_A Protein methyltransfera 99.4 1.8E-12 6.2E-17 116.1 13.0 84 156-244 100-183 (276)
150 3tma_A Methyltransferase; thum 99.4 3.9E-12 1.3E-16 118.1 15.5 129 152-283 189-326 (354)
151 1o54_A SAM-dependent O-methylt 99.4 2.2E-12 7.5E-17 115.6 13.2 114 154-275 100-214 (277)
152 2y1w_A Histone-arginine methyl 99.4 1.6E-12 5.4E-17 120.5 12.3 109 156-269 40-150 (348)
153 1u2z_A Histone-lysine N-methyl 99.4 1.7E-12 5.9E-17 123.0 12.7 114 155-271 231-356 (433)
154 3tfw_A Putative O-methyltransf 99.4 2.3E-12 8E-17 113.7 12.7 113 153-270 50-166 (248)
155 3p2e_A 16S rRNA methylase; met 99.4 2.9E-13 9.8E-18 117.9 6.5 105 165-272 23-137 (225)
156 2gpy_A O-methyltransferase; st 99.4 1.9E-12 6.6E-17 112.8 11.7 112 154-270 42-156 (233)
157 3lst_A CALO1 methyltransferase 99.4 1.1E-12 3.8E-17 121.5 10.6 110 158-275 176-287 (348)
158 2pbf_A Protein-L-isoaspartate 99.4 2.9E-12 9.9E-17 111.1 12.5 107 163-275 77-194 (227)
159 1fp1_D Isoliquiritigenin 2'-O- 99.4 1E-12 3.4E-17 122.8 10.2 98 164-274 207-306 (372)
160 1i1n_A Protein-L-isoaspartate 99.4 3.9E-12 1.3E-16 110.2 13.1 103 164-272 75-180 (226)
161 1ej0_A FTSJ; methyltransferase 99.4 1.4E-12 4.8E-17 107.6 9.7 99 164-276 20-138 (180)
162 3bzb_A Uncharacterized protein 99.4 4.6E-12 1.6E-16 113.9 13.7 117 156-273 69-204 (281)
163 2ipx_A RRNA 2'-O-methyltransfe 99.4 3.4E-12 1.2E-16 111.3 12.2 105 163-275 74-183 (233)
164 1zq9_A Probable dimethyladenos 99.4 9.7E-13 3.3E-17 118.6 8.9 111 154-270 16-143 (285)
165 2b25_A Hypothetical protein; s 99.4 4.7E-12 1.6E-16 116.6 13.4 117 154-275 93-220 (336)
166 1fp2_A Isoflavone O-methyltran 99.4 1.5E-12 5.3E-17 120.6 10.2 98 165-275 187-289 (352)
167 2frn_A Hypothetical protein PH 99.4 4.8E-12 1.6E-16 113.6 13.1 104 165-276 124-227 (278)
168 2yvl_A TRMI protein, hypotheti 99.4 1.2E-11 4.1E-16 108.3 15.3 112 155-275 80-191 (248)
169 3c3p_A Methyltransferase; NP_9 99.4 3E-12 1E-16 109.7 10.7 107 157-269 47-155 (210)
170 2bm8_A Cephalosporin hydroxyla 99.4 1.8E-12 6E-17 113.7 9.4 107 156-273 71-186 (236)
171 3giw_A Protein of unknown func 99.4 3.9E-12 1.3E-16 113.2 11.6 115 159-276 70-202 (277)
172 3duw_A OMT, O-methyltransferas 99.4 6.3E-12 2.2E-16 108.6 12.6 112 152-268 44-161 (223)
173 3dr5_A Putative O-methyltransf 99.4 4.3E-12 1.5E-16 110.2 11.5 101 167-275 57-161 (221)
174 2zfu_A Nucleomethylin, cerebra 99.4 3.6E-12 1.2E-16 109.4 10.8 88 164-275 65-152 (215)
175 3reo_A (ISO)eugenol O-methyltr 99.3 3.3E-12 1.1E-16 119.3 11.1 99 164-275 201-301 (368)
176 1o9g_A RRNA methyltransferase; 99.3 3E-12 1E-16 112.9 10.1 106 165-272 50-212 (250)
177 1r18_A Protein-L-isoaspartate( 99.3 3.6E-12 1.2E-16 110.7 10.4 109 157-272 73-192 (227)
178 3p9c_A Caffeic acid O-methyltr 99.3 5.3E-12 1.8E-16 117.7 12.2 99 164-275 199-299 (364)
179 3a27_A TYW2, uncharacterized p 99.3 7.3E-12 2.5E-16 112.1 12.6 104 164-275 117-220 (272)
180 1g8a_A Fibrillarin-like PRE-rR 99.3 9.7E-12 3.3E-16 107.8 12.6 102 164-273 71-177 (227)
181 1ixk_A Methyltransferase; open 99.3 7.2E-12 2.5E-16 114.5 12.2 115 155-272 107-244 (315)
182 4hc4_A Protein arginine N-meth 99.3 9.1E-12 3.1E-16 116.1 12.5 101 164-269 81-184 (376)
183 3tr6_A O-methyltransferase; ce 99.3 3.6E-12 1.2E-16 110.2 9.0 111 155-270 53-170 (225)
184 1ne2_A Hypothetical protein TA 99.3 2.5E-11 8.6E-16 103.1 13.7 89 164-264 49-139 (200)
185 2plw_A Ribosomal RNA methyltra 99.3 3E-12 1E-16 108.7 7.9 99 164-276 20-156 (201)
186 1sui_A Caffeoyl-COA O-methyltr 99.3 8.8E-12 3E-16 110.0 10.8 112 155-271 68-187 (247)
187 2h00_A Methyltransferase 10 do 99.3 3.7E-12 1.3E-16 112.4 8.3 103 166-270 65-188 (254)
188 3r3h_A O-methyltransferase, SA 99.3 1.2E-12 4.1E-17 115.3 5.0 112 154-270 48-166 (242)
189 1nv8_A HEMK protein; class I a 99.3 2.3E-11 7.9E-16 109.5 13.2 111 155-271 112-246 (284)
190 1zg3_A Isoflavanone 4'-O-methy 99.3 7.5E-12 2.6E-16 116.3 10.1 98 165-275 192-294 (358)
191 3id6_C Fibrillarin-like rRNA/T 99.3 4.3E-11 1.5E-15 104.4 14.2 104 163-274 73-181 (232)
192 3b3j_A Histone-arginine methyl 99.3 2.1E-11 7.1E-16 117.6 13.3 111 157-275 149-261 (480)
193 2ld4_A Anamorsin; methyltransf 99.3 1.2E-12 4.1E-17 109.0 3.8 87 163-272 9-99 (176)
194 4a6d_A Hydroxyindole O-methylt 99.3 4E-11 1.4E-15 111.3 14.5 110 160-275 173-284 (353)
195 2nxc_A L11 mtase, ribosomal pr 99.3 1.4E-11 4.8E-16 109.1 10.5 101 165-275 119-219 (254)
196 2igt_A SAM dependent methyltra 99.3 8.2E-12 2.8E-16 114.9 9.3 116 155-274 141-272 (332)
197 3bwc_A Spermidine synthase; SA 99.3 6.1E-12 2.1E-16 114.4 8.1 109 165-273 94-209 (304)
198 2hnk_A SAM-dependent O-methylt 99.3 1.4E-11 4.7E-16 107.9 10.0 114 153-271 47-178 (239)
199 3tm4_A TRNA (guanine N2-)-meth 99.3 1.8E-11 6.3E-16 114.4 11.1 110 152-264 204-321 (373)
200 3hp7_A Hemolysin, putative; st 99.3 7.9E-12 2.7E-16 112.5 7.9 97 165-273 84-184 (291)
201 2qm3_A Predicted methyltransfe 99.3 8.7E-11 3E-15 109.8 14.9 106 165-275 171-278 (373)
202 3cbg_A O-methyltransferase; cy 99.2 1.9E-11 6.6E-16 106.6 9.8 113 155-275 61-180 (232)
203 2yxl_A PH0851 protein, 450AA l 99.2 6E-11 2E-15 113.6 13.9 115 154-271 247-386 (450)
204 2avd_A Catechol-O-methyltransf 99.2 2.3E-11 7.9E-16 105.4 9.9 111 155-270 58-175 (229)
205 1wy7_A Hypothetical protein PH 99.2 2.1E-10 7E-15 97.7 15.6 93 164-264 47-141 (207)
206 3opn_A Putative hemolysin; str 99.2 1.8E-12 6.1E-17 113.4 2.7 102 164-274 35-137 (232)
207 3ajd_A Putative methyltransfer 99.2 1.2E-11 4.1E-16 110.7 8.1 113 157-272 74-209 (274)
208 2wa2_A Non-structural protein 99.2 4E-12 1.4E-16 114.0 4.8 105 164-276 80-195 (276)
209 2oxt_A Nucleoside-2'-O-methylt 99.2 5.5E-12 1.9E-16 112.5 5.5 105 164-276 72-187 (265)
210 3adn_A Spermidine synthase; am 99.2 3E-11 1E-15 109.3 10.5 110 165-274 82-198 (294)
211 1qam_A ERMC' methyltransferase 99.2 1E-11 3.4E-16 109.4 6.8 107 155-269 19-141 (244)
212 3dou_A Ribosomal RNA large sub 99.2 2.1E-11 7.2E-16 103.4 8.2 100 164-279 23-144 (191)
213 3gru_A Dimethyladenosine trans 99.2 6.7E-11 2.3E-15 106.9 11.4 87 154-247 38-124 (295)
214 3lec_A NADB-rossmann superfami 99.2 4E-11 1.4E-15 104.2 9.1 104 165-275 20-123 (230)
215 3gjy_A Spermidine synthase; AP 99.2 8.6E-11 2.9E-15 106.9 11.4 105 167-275 90-201 (317)
216 3sso_A Methyltransferase; macr 99.2 1.7E-11 5.9E-16 114.2 6.5 95 166-273 216-323 (419)
217 3c3y_A Pfomt, O-methyltransfer 99.2 5.6E-11 1.9E-15 104.1 9.5 113 155-275 59-179 (237)
218 1sqg_A SUN protein, FMU protei 99.2 1.1E-10 3.7E-15 111.1 12.1 98 152-253 232-337 (429)
219 3gnl_A Uncharacterized protein 99.2 5.1E-11 1.8E-15 104.4 8.9 104 165-275 20-123 (244)
220 1xj5_A Spermidine synthase 1; 99.2 5.9E-11 2E-15 109.2 9.6 108 165-272 119-233 (334)
221 2nyu_A Putative ribosomal RNA 99.2 6.2E-11 2.1E-15 100.0 8.9 99 164-276 20-147 (196)
222 1uir_A Polyamine aminopropyltr 99.2 7.4E-11 2.5E-15 107.7 9.9 109 165-273 76-194 (314)
223 2h1r_A Dimethyladenosine trans 99.2 1.2E-10 4.2E-15 105.6 11.0 88 154-248 30-117 (299)
224 2i7c_A Spermidine synthase; tr 99.2 6.4E-11 2.2E-15 106.6 8.4 108 165-272 77-190 (283)
225 2b2c_A Spermidine synthase; be 99.2 5.7E-11 1.9E-15 108.4 8.0 106 165-271 107-219 (314)
226 2o07_A Spermidine synthase; st 99.1 6E-11 2.1E-15 107.8 8.0 109 165-273 94-208 (304)
227 1inl_A Spermidine synthase; be 99.1 9.3E-11 3.2E-15 106.2 9.1 107 165-272 89-203 (296)
228 1iy9_A Spermidine synthase; ro 99.1 9.8E-11 3.3E-15 104.9 9.2 108 165-272 74-187 (275)
229 2f8l_A Hypothetical protein LM 99.1 2.4E-10 8.2E-15 105.6 11.4 124 147-275 107-257 (344)
230 3kr9_A SAM-dependent methyltra 99.1 1.5E-10 5.3E-15 100.3 9.3 103 165-275 14-117 (225)
231 2pt6_A Spermidine synthase; tr 99.1 1E-10 3.4E-15 107.2 8.5 108 165-273 115-229 (321)
232 2frx_A Hypothetical protein YE 99.1 3.4E-10 1.2E-14 109.0 12.4 113 156-271 105-243 (479)
233 1uwv_A 23S rRNA (uracil-5-)-me 99.1 2.6E-10 8.9E-15 108.6 11.0 86 155-245 275-364 (433)
234 3frh_A 16S rRNA methylase; met 99.1 1.4E-10 4.7E-15 100.9 7.8 81 165-253 104-184 (253)
235 1yub_A Ermam, rRNA methyltrans 99.1 1.9E-12 6.6E-17 114.0 -4.1 109 156-272 19-143 (245)
236 3tqs_A Ribosomal RNA small sub 99.1 4.3E-10 1.5E-14 99.6 10.5 83 154-244 17-103 (255)
237 1mjf_A Spermidine synthase; sp 99.1 2.1E-10 7.3E-15 103.0 8.4 105 165-273 74-192 (281)
238 3c0k_A UPF0064 protein YCCW; P 99.1 3.5E-10 1.2E-14 106.5 10.1 105 165-271 219-336 (396)
239 3m6w_A RRNA methylase; rRNA me 99.1 1.5E-10 5.1E-15 110.7 7.1 84 156-243 91-176 (464)
240 2cmg_A Spermidine synthase; tr 99.1 2.3E-10 7.9E-15 101.8 7.5 98 165-272 71-169 (262)
241 3k6r_A Putative transferase PH 99.1 1.4E-09 4.8E-14 97.3 12.6 98 165-270 124-221 (278)
242 3lcv_B Sisomicin-gentamicin re 99.0 1.3E-10 4.3E-15 102.1 5.3 100 165-269 131-231 (281)
243 2b78_A Hypothetical protein SM 99.0 2E-10 6.7E-15 107.8 6.8 103 165-270 211-327 (385)
244 3fut_A Dimethyladenosine trans 99.0 1.8E-09 6.1E-14 96.4 12.7 84 154-246 35-119 (271)
245 2okc_A Type I restriction enzy 99.0 1.4E-09 4.9E-14 103.9 12.8 127 147-275 152-308 (445)
246 1wxx_A TT1595, hypothetical pr 99.0 2.4E-10 8.3E-15 107.1 5.2 101 166-271 209-322 (382)
247 3v97_A Ribosomal RNA large sub 99.0 7.4E-10 2.5E-14 111.4 8.7 105 165-271 538-654 (703)
248 2as0_A Hypothetical protein PH 99.0 4.6E-10 1.6E-14 105.6 6.6 102 166-270 217-331 (396)
249 2p41_A Type II methyltransfera 99.0 2.1E-10 7.1E-15 104.3 4.0 104 164-277 80-194 (305)
250 2yx1_A Hypothetical protein MJ 99.0 3.4E-09 1.2E-13 97.5 12.0 100 165-276 194-293 (336)
251 2jjq_A Uncharacterized RNA met 99.0 1.2E-08 4.3E-13 96.7 15.9 95 164-269 288-382 (425)
252 2ih2_A Modification methylase 99.0 1.6E-09 5.4E-14 102.4 9.4 118 146-276 19-166 (421)
253 3m4x_A NOL1/NOP2/SUN family pr 99.0 6.4E-10 2.2E-14 106.2 6.5 85 156-243 95-181 (456)
254 1m6y_A S-adenosyl-methyltransf 98.9 1.3E-09 4.3E-14 98.8 8.0 86 156-245 16-106 (301)
255 4dmg_A Putative uncharacterize 98.9 2.5E-09 8.5E-14 100.4 10.0 100 166-271 214-323 (393)
256 3k0b_A Predicted N6-adenine-sp 98.9 4.2E-09 1.4E-13 98.9 11.5 112 152-266 187-340 (393)
257 3ldu_A Putative methylase; str 98.9 3.3E-09 1.1E-13 99.4 10.4 111 154-267 183-335 (385)
258 3ldg_A Putative uncharacterize 98.9 9.9E-09 3.4E-13 96.1 13.2 110 154-266 182-333 (384)
259 3uzu_A Ribosomal RNA small sub 98.9 5.6E-09 1.9E-13 93.6 9.2 74 155-235 31-106 (279)
260 3ftd_A Dimethyladenosine trans 98.9 9.9E-09 3.4E-13 90.5 10.4 88 155-250 20-107 (249)
261 2r6z_A UPF0341 protein in RSP 98.9 8.2E-10 2.8E-14 98.0 3.3 89 158-250 75-174 (258)
262 2b9e_A NOL1/NOP2/SUN domain fa 98.8 2.4E-08 8E-13 90.8 11.4 84 157-243 93-180 (309)
263 2xyq_A Putative 2'-O-methyl tr 98.8 9.7E-09 3.3E-13 92.4 8.2 95 163-276 60-173 (290)
264 3bt7_A TRNA (uracil-5-)-methyl 98.8 1.5E-08 5.3E-13 94.3 9.6 103 155-269 203-321 (369)
265 1qyr_A KSGA, high level kasuga 98.8 5E-09 1.7E-13 92.5 5.2 84 155-245 10-98 (252)
266 2ar0_A M.ecoki, type I restric 98.8 2.1E-08 7.3E-13 97.9 9.7 127 146-275 149-313 (541)
267 2dul_A N(2),N(2)-dimethylguano 98.7 2.2E-08 7.6E-13 93.5 8.8 101 166-270 47-160 (378)
268 2qfm_A Spermine synthase; sper 98.7 2.7E-08 9.4E-13 91.6 7.8 79 166-245 188-275 (364)
269 2oyr_A UPF0341 protein YHIQ; a 98.7 4.4E-08 1.5E-12 86.6 7.7 109 156-267 76-193 (258)
270 3ll7_A Putative methyltransfer 98.6 2.3E-08 7.7E-13 94.0 5.5 74 166-244 93-170 (410)
271 3axs_A Probable N(2),N(2)-dime 98.6 1.1E-07 3.7E-12 89.0 9.6 98 165-268 51-152 (392)
272 3v97_A Ribosomal RNA large sub 98.6 3.4E-07 1.1E-11 92.1 12.7 121 153-275 177-348 (703)
273 3lkd_A Type I restriction-modi 98.6 6.4E-07 2.2E-11 87.3 14.2 147 129-276 175-360 (542)
274 4gqb_A Protein arginine N-meth 98.6 2.6E-07 8.9E-12 91.1 11.0 101 167-275 358-465 (637)
275 3khk_A Type I restriction-modi 98.5 2.4E-07 8.1E-12 90.5 9.2 144 129-275 203-396 (544)
276 2jny_A Uncharacterized BCR; st 98.4 1.8E-07 6E-12 64.5 2.6 46 57-111 7-52 (67)
277 3ua3_A Protein arginine N-meth 98.3 1.1E-06 3.8E-11 86.8 9.2 98 167-268 410-528 (745)
278 3evf_A RNA-directed RNA polyme 98.3 2.7E-06 9.3E-11 75.0 10.5 109 162-276 70-186 (277)
279 2jr6_A UPF0434 protein NMA0874 98.3 2.1E-07 7.1E-12 64.4 2.7 45 57-110 5-49 (68)
280 2hf1_A Tetraacyldisaccharide-1 98.3 2E-07 7E-12 64.5 2.3 44 58-110 6-49 (68)
281 2js4_A UPF0434 protein BB2007; 98.3 2.4E-07 8.3E-12 64.5 2.7 46 57-111 5-50 (70)
282 3o4f_A Spermidine synthase; am 98.3 6.1E-06 2.1E-10 73.9 12.4 109 164-273 81-197 (294)
283 2pk7_A Uncharacterized protein 98.3 2.7E-07 9.1E-12 64.1 2.5 44 58-110 6-49 (69)
284 4auk_A Ribosomal RNA large sub 98.2 5.5E-06 1.9E-10 76.3 10.7 92 164-271 209-300 (375)
285 3cvo_A Methyltransferase-like 98.2 2.3E-05 7.7E-10 66.5 13.8 108 156-276 22-153 (202)
286 3s1s_A Restriction endonucleas 98.2 1.1E-05 3.7E-10 81.1 13.4 131 146-276 295-467 (878)
287 1wg8_A Predicted S-adenosylmet 98.2 3.9E-06 1.3E-10 74.4 8.7 80 156-244 12-96 (285)
288 2kpi_A Uncharacterized protein 98.2 9E-07 3.1E-11 58.8 2.9 43 57-110 7-51 (56)
289 3b5i_A S-adenosyl-L-methionine 98.1 8.5E-06 2.9E-10 75.7 9.6 109 167-275 53-226 (374)
290 3gcz_A Polyprotein; flavivirus 98.1 1E-06 3.5E-11 77.8 2.8 108 163-276 87-203 (282)
291 2k4m_A TR8_protein, UPF0146 pr 98.1 9.5E-06 3.2E-10 64.7 7.7 60 166-245 35-97 (153)
292 2qy6_A UPF0209 protein YFCK; s 98.0 6.3E-06 2.2E-10 72.7 6.0 107 165-271 59-210 (257)
293 2zig_A TTHA0409, putative modi 98.0 1.8E-05 6.2E-10 71.2 9.1 60 151-213 221-280 (297)
294 3ufb_A Type I restriction-modi 98.0 8.6E-05 2.9E-09 72.2 14.4 144 129-275 176-363 (530)
295 2efj_A 3,7-dimethylxanthine me 98.0 1.7E-05 5.9E-10 73.7 8.2 82 167-253 53-165 (384)
296 2k5r_A Uncharacterized protein 98.0 3.1E-06 1.1E-10 62.5 2.5 54 57-110 5-76 (97)
297 3lkz_A Non-structural protein 97.8 9.6E-05 3.3E-09 65.5 10.0 110 162-278 90-208 (321)
298 4fzv_A Putative methyltransfer 97.8 5.3E-05 1.8E-09 69.9 8.4 87 157-243 139-229 (359)
299 2wk1_A NOVP; transferase, O-me 97.7 0.00037 1.3E-08 62.1 12.2 109 163-278 103-245 (282)
300 3p8z_A Mtase, non-structural p 97.7 0.00028 9.4E-09 60.6 10.4 110 162-279 74-191 (267)
301 3eld_A Methyltransferase; flav 97.7 4E-05 1.4E-09 68.1 5.4 107 164-276 79-193 (300)
302 1m6e_X S-adenosyl-L-methionnin 97.6 3.1E-05 1E-09 71.4 4.4 108 166-275 51-210 (359)
303 3tka_A Ribosomal RNA small sub 97.5 0.00015 5.1E-09 65.8 6.2 84 156-246 47-137 (347)
304 2px2_A Genome polyprotein [con 97.4 0.00037 1.3E-08 60.6 7.4 105 163-277 70-186 (269)
305 1g60_A Adenine-specific methyl 97.4 0.00059 2E-08 60.0 8.7 59 151-212 198-256 (260)
306 3c6k_A Spermine synthase; sper 97.3 0.0004 1.4E-08 64.2 7.5 79 165-244 204-291 (381)
307 1i4w_A Mitochondrial replicati 97.3 0.00087 3E-08 61.6 9.3 71 155-231 41-117 (353)
308 1pft_A TFIIB, PFTFIIBN; N-term 96.9 0.0006 2.1E-08 44.0 3.1 33 57-98 2-35 (50)
309 2vz8_A Fatty acid synthase; tr 96.7 0.00037 1.3E-08 79.0 1.7 102 165-272 1239-1346(2512)
310 1rjd_A PPM1P, carboxy methyl t 96.5 0.034 1.2E-06 50.6 12.9 106 156-263 87-219 (334)
311 3r24_A NSP16, 2'-O-methyl tran 96.5 0.013 4.3E-07 52.0 9.0 105 156-278 94-221 (344)
312 1g55_A DNA cytosine methyltran 96.1 0.0093 3.2E-07 54.5 6.6 100 167-274 2-117 (343)
313 3g7u_A Cytosine-specific methy 95.9 0.039 1.3E-06 51.0 10.2 101 168-277 3-120 (376)
314 2k5c_A Uncharacterized protein 95.7 0.0014 4.8E-08 45.8 -0.6 40 58-97 6-61 (95)
315 1boo_A Protein (N-4 cytosine-s 95.5 0.028 9.5E-07 50.8 7.2 59 151-212 238-296 (323)
316 2py6_A Methyltransferase FKBM; 95.4 0.041 1.4E-06 51.5 8.2 63 164-226 224-289 (409)
317 3q87_A Putative uncharacterize 95.4 0.0063 2.2E-07 46.9 2.0 28 82-109 94-121 (125)
318 1eg2_A Modification methylase 95.2 0.048 1.7E-06 49.2 7.7 60 150-212 227-289 (319)
319 3qv2_A 5-cytosine DNA methyltr 95.1 0.094 3.2E-06 47.5 9.3 104 167-279 10-133 (327)
320 2oo3_A Protein involved in cat 95.0 0.022 7.6E-07 50.4 4.7 103 166-275 91-199 (283)
321 3j20_Y 30S ribosomal protein S 94.6 0.013 4.5E-07 37.6 1.6 34 55-97 14-47 (50)
322 1vq8_Z 50S ribosomal protein L 94.6 0.011 3.8E-07 42.2 1.3 30 59-97 26-55 (83)
323 1qyp_A RNA polymerase II; tran 94.5 0.016 5.5E-07 38.3 1.9 45 55-99 10-55 (57)
324 2akl_A PHNA-like protein PA012 94.1 0.023 7.7E-07 43.6 2.2 35 54-98 21-55 (138)
325 2uyo_A Hypothetical protein ML 94.1 1 3.5E-05 40.3 13.6 116 156-276 93-217 (310)
326 1dl6_A Transcription factor II 93.9 0.031 1.1E-06 37.0 2.3 30 59-97 10-40 (58)
327 1zkd_A DUF185; NESG, RPR58, st 93.8 0.24 8.2E-06 45.8 9.1 77 166-251 80-163 (387)
328 2c7p_A Modification methylase 93.5 0.16 5.5E-06 45.9 7.3 101 167-278 11-122 (327)
329 2dph_A Formaldehyde dismutase; 93.3 0.18 6.1E-06 46.6 7.4 99 160-269 179-294 (398)
330 1kol_A Formaldehyde dehydrogen 93.3 0.45 1.6E-05 43.8 10.1 100 161-270 180-296 (398)
331 2qrv_A DNA (cytosine-5)-methyl 92.9 0.16 5.6E-06 45.2 6.2 98 165-270 14-127 (295)
332 4f3n_A Uncharacterized ACR, CO 92.7 0.29 9.9E-06 45.9 7.8 46 167-212 138-188 (432)
333 4h0n_A DNMT2; SAH binding, tra 92.6 0.14 4.7E-06 46.5 5.4 104 168-279 4-122 (333)
334 2j6a_A Protein TRM112; transla 92.5 0.043 1.5E-06 43.1 1.7 28 83-110 105-132 (141)
335 3ubt_Y Modification methylase 92.2 0.59 2E-05 41.8 9.1 103 168-280 1-114 (331)
336 1tfi_A Transcriptional elongat 92.0 0.067 2.3E-06 34.2 1.8 41 58-98 7-48 (50)
337 3jyw_9 60S ribosomal protein L 91.7 0.092 3.2E-06 36.2 2.3 30 59-97 25-54 (72)
338 3cc2_Z 50S ribosomal protein L 91.6 0.069 2.4E-06 40.2 1.7 29 59-97 59-88 (116)
339 3j21_i 50S ribosomal protein L 91.6 0.069 2.4E-06 37.9 1.6 29 60-97 35-63 (83)
340 2k4x_A 30S ribosomal protein S 91.4 0.12 4E-06 33.8 2.5 35 54-97 12-46 (55)
341 1f8f_A Benzyl alcohol dehydrog 91.2 0.64 2.2E-05 42.3 8.3 93 162-269 186-284 (371)
342 3iz5_m 60S ribosomal protein L 91.0 0.086 3E-06 38.1 1.6 29 60-97 36-64 (92)
343 2jne_A Hypothetical protein YF 90.8 0.12 4.1E-06 37.5 2.2 26 61-97 33-58 (101)
344 3tos_A CALS11; methyltransfera 90.8 2.3 8E-05 36.8 11.0 109 165-278 68-218 (257)
345 3h0g_I DNA-directed RNA polyme 90.8 0.24 8.4E-06 37.4 4.1 46 53-98 65-111 (113)
346 1ffk_W Ribosomal protein L37AE 90.6 0.077 2.6E-06 36.7 1.0 29 59-97 26-55 (73)
347 4a17_Y RPL37A, 60S ribosomal p 90.4 0.093 3.2E-06 38.6 1.4 30 59-97 35-64 (103)
348 3izc_m 60S ribosomal protein R 90.2 0.1 3.5E-06 37.6 1.5 30 59-97 35-64 (92)
349 1gh9_A 8.3 kDa protein (gene M 90.2 0.15 5.1E-06 35.1 2.2 30 60-100 4-33 (71)
350 3h0g_L DNA-directed RNA polyme 90.0 0.2 7E-06 33.5 2.7 30 59-98 20-49 (63)
351 3po3_S Transcription elongatio 89.7 0.27 9.1E-06 40.4 3.8 40 58-97 135-175 (178)
352 1twf_L ABC10-alpha, DNA-direct 89.6 0.16 5.3E-06 35.0 1.9 29 58-96 26-54 (70)
353 3me5_A Cytosine-specific methy 88.7 0.64 2.2E-05 44.3 6.2 72 154-231 69-146 (482)
354 2jrp_A Putative cytoplasmic pr 88.4 0.22 7.6E-06 35.1 2.1 26 61-97 3-28 (81)
355 3llv_A Exopolyphosphatase-rela 88.0 1.6 5.3E-05 33.5 7.1 66 167-244 6-77 (141)
356 4ej6_A Putative zinc-binding d 87.6 4.6 0.00016 36.6 11.1 96 160-270 176-280 (370)
357 3h0g_I DNA-directed RNA polyme 87.5 0.39 1.3E-05 36.3 3.1 40 58-102 2-41 (113)
358 1wii_A Hypothetical UPF0222 pr 87.4 0.26 8.7E-06 35.2 1.9 39 58-99 21-59 (85)
359 3qt1_I DNA-directed RNA polyme 86.9 0.46 1.6E-05 37.0 3.3 50 48-102 12-61 (133)
360 3two_A Mannitol dehydrogenase; 86.7 1.5 5.2E-05 39.4 7.3 88 162-269 172-260 (348)
361 3ius_A Uncharacterized conserv 86.2 9.3 0.00032 32.6 11.9 70 168-253 6-79 (286)
362 1pqw_A Polyketide synthase; ro 86.0 1.7 5.6E-05 35.5 6.6 45 162-208 34-81 (198)
363 3ip1_A Alcohol dehydrogenase, 86.0 5.5 0.00019 36.6 10.8 96 163-272 210-316 (404)
364 3fpc_A NADP-dependent alcohol 86.0 2.9 9.9E-05 37.6 8.8 97 160-271 160-263 (352)
365 3vyw_A MNMC2; tRNA wobble urid 86.0 1.4 5E-05 39.2 6.5 132 165-298 95-249 (308)
366 1twf_I B12.6, DNA-directed RNA 85.9 0.53 1.8E-05 36.0 3.2 45 54-99 66-112 (122)
367 3fwz_A Inner membrane protein 85.8 1.8 6E-05 33.4 6.3 66 167-244 7-78 (140)
368 1pqv_S STP-alpha, transcriptio 85.3 0.34 1.2E-05 43.4 2.1 42 56-97 264-306 (309)
369 3ga8_A HTH-type transcriptiona 85.1 0.24 8.4E-06 34.7 0.8 35 61-97 3-46 (78)
370 3c85_A Putative glutathione-re 84.7 2.8 9.7E-05 33.6 7.4 67 166-244 38-112 (183)
371 2lv2_A Insulinoma-associated p 84.6 0.94 3.2E-05 32.1 3.8 40 55-99 23-68 (85)
372 3m6i_A L-arabinitol 4-dehydrog 84.5 9.9 0.00034 34.1 11.7 101 160-273 173-282 (363)
373 3j21_g 50S ribosomal protein L 83.9 0.52 1.8E-05 30.1 1.9 26 59-97 13-38 (51)
374 2b5w_A Glucose dehydrogenase; 83.3 4.1 0.00014 36.7 8.5 89 162-269 162-268 (357)
375 2yur_A Retinoblastoma-binding 83.0 0.84 2.9E-05 31.2 2.9 18 54-71 9-26 (74)
376 3iht_A S-adenosyl-L-methionine 82.9 1.6 5.4E-05 34.9 4.7 100 166-276 40-146 (174)
377 4dvj_A Putative zinc-dependent 82.5 4.3 0.00015 36.7 8.3 91 166-273 171-269 (363)
378 3flo_B DNA polymerase alpha ca 82.5 0.94 3.2E-05 37.9 3.5 39 59-97 21-59 (206)
379 1e4u_A Transcriptional repress 81.9 0.81 2.8E-05 31.9 2.5 16 58-73 9-24 (78)
380 3qt1_I DNA-directed RNA polyme 81.9 0.28 9.5E-06 38.2 0.0 46 53-98 85-131 (133)
381 1v3u_A Leukotriene B4 12- hydr 81.4 4.2 0.00014 36.1 7.7 44 162-207 141-187 (333)
382 3e8x_A Putative NAD-dependent 80.3 9.4 0.00032 31.6 9.2 78 165-254 19-101 (236)
383 3sx2_A Putative 3-ketoacyl-(ac 80.2 7.9 0.00027 33.2 8.9 80 165-250 11-115 (278)
384 3l77_A Short-chain alcohol deh 79.7 14 0.00049 30.5 10.2 79 167-250 2-93 (235)
385 2ct7_A Ring finger protein 31; 79.6 2.2 7.4E-05 30.3 4.1 30 59-97 24-53 (86)
386 1twf_I B12.6, DNA-directed RNA 79.6 1 3.6E-05 34.4 2.6 39 58-101 2-40 (122)
387 3goh_A Alcohol dehydrogenase, 79.5 3.2 0.00011 36.6 6.2 70 160-244 136-206 (315)
388 1lss_A TRK system potassium up 79.0 7.8 0.00027 28.9 7.6 67 167-244 4-76 (140)
389 1pl8_A Human sorbitol dehydrog 79.0 4.7 0.00016 36.3 7.3 97 161-272 166-271 (356)
390 4eso_A Putative oxidoreductase 78.0 10 0.00035 32.1 8.9 75 165-248 6-93 (255)
391 1k81_A EIF-2-beta, probable tr 77.9 0.83 2.8E-05 26.9 1.2 29 62-99 2-33 (36)
392 2djb_A Polycomb group ring fin 77.6 1.6 5.3E-05 29.5 2.8 18 54-71 9-26 (72)
393 4a2c_A Galactitol-1-phosphate 77.5 23 0.00077 31.3 11.4 98 161-273 155-259 (346)
394 3ps9_A TRNA 5-methylaminomethy 77.4 3.6 0.00012 40.6 6.5 106 166-272 66-217 (676)
395 3o38_A Short chain dehydrogena 77.2 11 0.00038 31.9 8.9 78 166-248 21-112 (266)
396 3swr_A DNA (cytosine-5)-methyl 77.1 3.1 0.0001 43.2 5.9 71 166-245 539-626 (1002)
397 4b7c_A Probable oxidoreductase 76.8 4.8 0.00017 35.7 6.6 48 160-208 143-192 (336)
398 4gzn_C ZFP-57, zinc finger pro 76.8 1.2 4.2E-05 29.1 2.0 35 60-99 4-44 (60)
399 2j3h_A NADP-dependent oxidored 76.7 5.8 0.0002 35.3 7.1 46 162-208 151-198 (345)
400 1vd4_A Transcription initiatio 76.2 0.38 1.3E-05 31.5 -0.7 40 59-100 13-52 (62)
401 2ct0_A Non-SMC element 1 homol 76.1 1.8 6.1E-05 29.9 2.7 35 49-97 4-38 (74)
402 4fn4_A Short chain dehydrogena 75.9 12 0.0004 32.2 8.6 77 165-247 5-94 (254)
403 3ucx_A Short chain dehydrogena 75.7 15 0.00053 31.1 9.4 76 166-247 10-98 (264)
404 3qiv_A Short-chain dehydrogena 75.4 11 0.00037 31.7 8.2 76 166-247 8-96 (253)
405 3pvc_A TRNA 5-methylaminomethy 75.3 4.2 0.00014 40.3 6.2 108 165-272 57-209 (689)
406 2yu4_A E3 SUMO-protein ligase 75.2 1.6 5.5E-05 31.4 2.4 26 58-97 5-30 (94)
407 2d8a_A PH0655, probable L-thre 75.1 11 0.00038 33.6 8.6 88 163-268 165-261 (348)
408 3ztg_A E3 ubiquitin-protein li 75.1 1.7 5.7E-05 30.9 2.5 15 57-71 10-24 (92)
409 2zjr_Z 50S ribosomal protein L 74.8 1.4 4.6E-05 29.2 1.7 25 57-95 27-51 (60)
410 3l9w_A Glutathione-regulated p 74.7 11 0.00036 35.0 8.5 66 167-244 4-75 (413)
411 1l1o_C Replication protein A 7 74.3 1.7 5.7E-05 35.6 2.5 31 60-100 43-75 (181)
412 3o9x_A Uncharacterized HTH-typ 74.2 0.95 3.2E-05 34.7 1.0 13 86-98 35-47 (133)
413 3tjr_A Short chain dehydrogena 74.1 13 0.00045 32.4 8.7 78 165-248 29-119 (301)
414 4esj_A Type-2 restriction enzy 74.1 1.4 4.7E-05 37.5 2.0 32 60-97 34-66 (257)
415 3u50_C Telomerase-associated p 73.8 1.6 5.4E-05 35.5 2.2 28 59-96 41-68 (172)
416 2lce_A B-cell lymphoma 6 prote 73.5 2.6 8.9E-05 28.1 3.0 42 58-99 15-57 (74)
417 2cdc_A Glucose dehydrogenase g 73.0 13 0.00044 33.4 8.5 40 167-208 181-225 (366)
418 3nyw_A Putative oxidoreductase 73.0 8.9 0.0003 32.4 7.1 80 166-248 6-98 (250)
419 3uk3_C Zinc finger protein 217 73.0 1.9 6.5E-05 26.9 2.1 40 60-99 4-44 (57)
420 3h7a_A Short chain dehydrogena 72.9 9.2 0.00031 32.4 7.2 77 166-248 6-94 (252)
421 3s2e_A Zinc-containing alcohol 72.8 7.6 0.00026 34.5 6.9 93 162-270 162-259 (340)
422 1nui_A DNA primase/helicase; z 72.7 1.6 5.6E-05 37.5 2.3 27 60-96 14-42 (255)
423 3k1f_M Transcription initiatio 72.6 1.3 4.6E-05 35.8 1.5 29 60-97 21-52 (197)
424 1bbo_A Human enhancer-binding 72.6 2.3 7.8E-05 26.5 2.4 34 61-99 2-41 (57)
425 3jyn_A Quinone oxidoreductase; 72.4 9.8 0.00034 33.5 7.5 46 162-209 136-184 (325)
426 4eye_A Probable oxidoreductase 72.2 6.8 0.00023 35.0 6.4 90 162-269 155-252 (342)
427 3qwb_A Probable quinone oxidor 72.1 9.6 0.00033 33.7 7.4 90 163-269 145-242 (334)
428 2csy_A Zinc finger protein 183 71.9 3.2 0.00011 28.6 3.2 20 51-70 6-25 (81)
429 2eps_A POZ-, at HOOK-, and zin 71.7 4.1 0.00014 25.3 3.5 37 58-98 10-52 (54)
430 3o26_A Salutaridine reductase; 71.7 14 0.00047 31.9 8.2 78 166-248 11-102 (311)
431 3lrq_A E3 ubiquitin-protein li 71.7 1.7 5.7E-05 31.7 1.8 27 57-97 19-45 (100)
432 1y1p_A ARII, aldehyde reductas 71.6 47 0.0016 28.7 11.8 78 166-249 10-95 (342)
433 3f9i_A 3-oxoacyl-[acyl-carrier 71.4 12 0.00041 31.3 7.5 75 165-248 12-95 (249)
434 6rxn_A Rubredoxin; electron tr 71.2 2.3 7.9E-05 26.4 2.0 35 60-96 4-39 (46)
435 2kn9_A Rubredoxin; metalloprot 71.0 4.6 0.00016 28.3 3.8 37 58-95 25-68 (81)
436 3v2d_5 50S ribosomal protein L 71.0 2 6.9E-05 28.3 1.9 23 58-94 28-50 (60)
437 3gaf_A 7-alpha-hydroxysteroid 70.9 16 0.00054 30.9 8.2 78 165-248 10-100 (256)
438 1iym_A EL5; ring-H2 finger, ub 70.8 2.5 8.7E-05 26.5 2.3 27 60-97 5-31 (55)
439 3rkr_A Short chain oxidoreduct 70.4 14 0.00047 31.4 7.7 77 165-247 27-116 (262)
440 1id1_A Putative potassium chan 70.1 14 0.0005 28.3 7.2 69 167-244 3-78 (153)
441 1x6e_A Zinc finger protein 24; 70.0 4.5 0.00015 26.7 3.6 37 58-99 12-54 (72)
442 3lyl_A 3-oxoacyl-(acyl-carrier 69.9 17 0.00057 30.3 8.1 77 166-248 4-93 (247)
443 3jv7_A ADH-A; dehydrogenase, n 69.9 7.6 0.00026 34.6 6.2 91 163-269 168-265 (345)
444 2adr_A ADR1; transcription reg 69.6 2.7 9.2E-05 26.5 2.3 34 61-99 3-42 (60)
445 3ctm_A Carbonyl reductase; alc 69.4 16 0.00055 31.1 8.0 77 166-248 33-122 (279)
446 4rxn_A Rubredoxin; electron tr 69.4 3.5 0.00012 26.6 2.7 36 60-96 3-45 (54)
447 1vk6_A NADH pyrophosphatase; 1 69.2 2.3 7.9E-05 37.1 2.4 30 59-97 106-135 (269)
448 3sju_A Keto reductase; short-c 69.1 19 0.00065 30.9 8.4 77 166-248 23-112 (279)
449 3imf_A Short chain dehydrogena 69.1 14 0.00047 31.3 7.4 76 166-247 5-93 (257)
450 1qxf_A GR2, 30S ribosomal prot 69.0 3.4 0.00012 27.7 2.6 38 61-107 8-47 (66)
451 2ea6_A Ring finger protein 4; 68.9 3.2 0.00011 27.3 2.6 36 54-97 9-44 (69)
452 1e3j_A NADP(H)-dependent ketos 68.8 11 0.00037 33.7 7.0 95 161-271 163-268 (352)
453 1cdo_A Alcohol dehydrogenase; 68.6 6.6 0.00023 35.5 5.5 95 162-271 188-291 (374)
454 2kdx_A HYPA, hydrogenase/ureas 68.4 2.3 7.9E-05 32.1 2.0 30 57-97 70-100 (119)
455 3awd_A GOX2181, putative polyo 68.3 23 0.00078 29.6 8.7 76 166-247 12-100 (260)
456 2ctu_A Zinc finger protein 483 67.9 1.5 5.3E-05 28.8 0.8 38 59-102 17-54 (73)
457 3v8b_A Putative dehydrogenase, 67.9 22 0.00074 30.6 8.6 77 165-247 26-115 (283)
458 2ep4_A Ring finger protein 24; 67.9 4.2 0.00014 27.3 3.1 16 57-72 12-27 (74)
459 1t1h_A Gspef-atpub14, armadill 67.7 2.9 9.8E-05 28.5 2.2 14 57-70 5-18 (78)
460 4g65_A TRK system potassium up 67.6 7.3 0.00025 36.6 5.7 66 167-243 3-74 (461)
461 2jhf_A Alcohol dehydrogenase E 67.4 7.3 0.00025 35.2 5.5 95 162-271 187-290 (374)
462 3fbg_A Putative arginate lyase 67.3 20 0.00069 31.8 8.5 88 166-270 150-244 (346)
463 1p0f_A NADP-dependent alcohol 67.3 5.8 0.0002 35.8 4.8 95 162-271 187-290 (373)
464 2ct2_A Tripartite motif protei 67.2 5.4 0.00019 27.7 3.7 17 56-72 11-27 (88)
465 1yb1_A 17-beta-hydroxysteroid 67.2 24 0.00082 30.0 8.7 78 165-248 29-119 (272)
466 3tfo_A Putative 3-oxoacyl-(acy 67.1 17 0.00059 31.0 7.7 76 167-248 4-92 (264)
467 2zb4_A Prostaglandin reductase 67.1 18 0.00061 32.3 8.1 92 160-268 152-254 (357)
468 3pk0_A Short-chain dehydrogena 67.1 19 0.00066 30.5 8.0 78 166-248 9-99 (262)
469 3ioy_A Short-chain dehydrogena 67.0 26 0.00088 30.8 9.0 79 166-248 7-98 (319)
470 1x5w_A Zinc finger protein 64, 67.0 3.5 0.00012 27.0 2.5 36 59-99 8-49 (70)
471 1e3i_A Alcohol dehydrogenase, 66.9 7.3 0.00025 35.2 5.4 95 162-271 191-294 (376)
472 3v2h_A D-beta-hydroxybutyrate 66.8 22 0.00077 30.5 8.4 80 165-249 23-116 (281)
473 1dx8_A Rubredoxin; electron tr 66.5 5.3 0.00018 27.2 3.3 38 58-96 5-49 (70)
474 3ppi_A 3-hydroxyacyl-COA dehyd 66.4 19 0.00066 30.7 7.9 71 165-244 28-110 (281)
475 2zig_A TTHA0409, putative modi 66.3 5.6 0.00019 34.9 4.4 56 219-274 20-97 (297)
476 2d8t_A Dactylidin, ring finger 66.3 4.5 0.00015 27.0 3.0 15 56-70 11-25 (71)
477 4ayb_P DNA-directed RNA polyme 66.1 3.7 0.00013 25.5 2.1 32 59-97 2-33 (48)
478 1uuf_A YAHK, zinc-type alcohol 66.1 9.3 0.00032 34.5 6.0 45 163-208 191-236 (369)
479 4eez_A Alcohol dehydrogenase 1 66.0 14 0.00047 32.8 7.0 48 162-209 159-207 (348)
480 3ggo_A Prephenate dehydrogenas 65.9 40 0.0014 29.6 10.0 89 167-269 33-123 (314)
481 2jah_A Clavulanic acid dehydro 65.7 28 0.00097 29.0 8.7 76 166-247 6-94 (247)
482 3a43_A HYPD, hydrogenase nicke 65.2 3.3 0.00011 32.3 2.3 41 56-97 66-117 (139)
483 2fzw_A Alcohol dehydrogenase c 65.2 6.7 0.00023 35.4 4.8 95 162-271 186-289 (373)
484 3l4b_C TRKA K+ channel protien 64.9 12 0.00042 30.7 6.1 65 169-244 2-72 (218)
485 3uog_A Alcohol dehydrogenase; 64.9 8.7 0.0003 34.6 5.5 94 161-271 184-284 (363)
486 3r1i_A Short-chain type dehydr 64.9 17 0.00059 31.1 7.3 79 165-249 30-121 (276)
487 1l8d_A DNA double-strand break 64.8 1.8 6.3E-05 32.2 0.8 11 61-71 48-58 (112)
488 3rd5_A Mypaa.01249.C; ssgcid, 64.7 17 0.00058 31.3 7.3 74 165-247 14-96 (291)
489 2drp_A Protein (tramtrack DNA- 64.5 0.66 2.3E-05 30.3 -1.7 38 59-99 9-52 (66)
490 4egf_A L-xylulose reductase; s 64.4 20 0.00068 30.5 7.5 79 165-248 18-109 (266)
491 2kiz_A E3 ubiquitin-protein li 64.3 6 0.00021 26.1 3.3 17 56-72 10-26 (69)
492 2fiy_A Protein FDHE homolog; F 64.1 2.3 7.9E-05 37.9 1.4 36 58-98 180-219 (309)
493 2ecm_A Ring finger and CHY zin 64.1 4.7 0.00016 25.2 2.6 28 59-97 4-31 (55)
494 2rhc_B Actinorhodin polyketide 64.0 30 0.001 29.5 8.7 77 166-248 21-110 (277)
495 2ysj_A Tripartite motif-contai 64.0 6.6 0.00023 25.4 3.4 15 57-71 17-31 (63)
496 3uve_A Carveol dehydrogenase ( 63.9 30 0.001 29.5 8.7 77 166-248 10-115 (286)
497 1zem_A Xylitol dehydrogenase; 63.8 30 0.001 29.1 8.6 76 166-247 6-94 (262)
498 3nzo_A UDP-N-acetylglucosamine 63.7 16 0.00053 33.4 7.0 82 167-250 35-125 (399)
499 2gdz_A NAD+-dependent 15-hydro 63.6 22 0.00075 30.1 7.7 86 166-255 6-104 (267)
500 4e6p_A Probable sorbitol dehyd 63.6 30 0.001 29.1 8.5 74 166-248 7-93 (259)
No 1
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.82 E-value=1.3e-20 Score=178.99 Aligned_cols=112 Identities=10% Similarity=0.109 Sum_probs=87.2
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++-.. .....+...+...+++.+
T Consensus 97 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 97 RDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREKGIR-----VRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTTTCC-----EECSCCSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHcCCC-----cceeeechhhHhhcccCC
Confidence 4555556666789999999999999999999876 999999999999999875110 001112233444566667
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
++||+|++.++++|++|+..++++++++|||+|.+.+..
T Consensus 170 ~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp CCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 899999999999999999999999999999876555433
No 2
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.81 E-value=7.8e-19 Score=156.74 Aligned_cols=175 Identities=21% Similarity=0.341 Sum_probs=120.9
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccCccC--cCCCchhhhhhhcCchhhHHhHHh
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKD--YTEVKPASTELFRSPFVSFLYERG 138 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~~~~--y~~~~~~~~~~~~~~~~s~~~~~~ 138 (319)
|.||.|++++.... ..+.|++|......++||++++..+.... ..+. .+++..
T Consensus 3 ~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~~~----~~~~~~---------- 57 (269)
T 1p91_A 3 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS----AEMMQA---------- 57 (269)
T ss_dssp BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSS----HHHHHH----------
T ss_pred ccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCCCCCC----HHHHHH----------
Confidence 78999999876543 57899997655577899999886533211 1110 111110
Q ss_pred HHHhhhhCCCCCcHH--HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc
Q 020988 139 WRQNFNRSGFPGPDE--EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI 216 (319)
Q Consensus 139 w~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~ 216 (319)
+..+...+++.+.. ..+.+...+ ..++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|+++.
T Consensus 58 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------ 129 (269)
T 1p91_A 58 -RRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------ 129 (269)
T ss_dssp -HHHHHTTTTTHHHHHHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------
T ss_pred -HHHHHhCCCcHHHHHHHHHHHHHhc-CCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------
Confidence 11122222222211 122222222 24678999999999999999999854569999999999999998864
Q ss_pred CCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988 217 LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY 277 (319)
Q Consensus 217 ~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~ 277 (319)
.++.++.+|+.++|+.+++||+|++.++.. .++++.++|||+|...+.....
T Consensus 130 --~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 130 --PQVTFCVASSHRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp --TTSEEEECCTTSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECT
T ss_pred --CCcEEEEcchhhCCCCCCceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCH
Confidence 468899999999998889999999876632 3788999999988777666543
No 3
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.78 E-value=9.4e-19 Score=155.83 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
|.+.++.+.+... .+++|||||||+|.++..+++.+. +|+|+|+|+.|++.|++ .+++.++++|+++
T Consensus 26 p~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~ 92 (257)
T 4hg2_A 26 PRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAED 92 (257)
T ss_dssp CHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTC
T ss_pred HHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhh
Confidence 4555566665543 457999999999999999999876 99999999999988764 3589999999999
Q ss_pred CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 231 LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+|+++++||+|++..++||+ ++..+++++.|+|||||.+.++.+.
T Consensus 93 ~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 93 TGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp CCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECC
Confidence 99999999999999999887 7889999999999999988877663
No 4
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.77 E-value=2.4e-18 Score=152.80 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=101.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|.++..+++.++ +|+|+|+|+.+++.|++++...+ ..++.++++|+..+|++
T Consensus 26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSC
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEecHHhCCCC
Confidence 34566667677889999999999999999999876 99999999999999999887642 35799999999999998
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||+|++..+++|++|+..+++++.++|||+|.+.+...
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 89999999999999999999999999999999887766544
No 5
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.74 E-value=2.9e-17 Score=146.52 Aligned_cols=106 Identities=13% Similarity=0.186 Sum_probs=89.9
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (319)
..++.+|||||||+|.++..+++.. ++.+|+|+|+|+.|++.|++++...+ ...+++++++|+.++|+. .||+|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~~D~~~~~~~--~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAIE--NASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCTTTCCCC--SEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEeeccccccccc--ccccc
Confidence 4678999999999999999998874 35689999999999999999987643 345899999999999874 69999
Q ss_pred EecccccCCCCHH--HHHHHHHHhhcCCCeeEEE
Q 020988 242 HAGAALHCWPSPS--NAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 242 ~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~ 273 (319)
++..+++|+++++ .++++++++|||||.+.+.
T Consensus 144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence 9999999997654 5799999999988765544
No 6
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.74 E-value=4e-17 Score=143.36 Aligned_cols=115 Identities=14% Similarity=0.216 Sum_probs=102.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...+ ..++.++++|+..+|+++
T Consensus 11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSCT
T ss_pred chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCCeEEEecccccCCCCC
Confidence 4555667778899999999999999999999876 99999999999999999887652 357999999999999988
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++..+++|++++..+++++.++|||+|...+...
T Consensus 86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999999999999999999999999999887766544
No 7
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.74 E-value=9.1e-18 Score=144.11 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=91.2
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC---------ccCCCCeEEEEcCCCCCC
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLP 232 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp 232 (319)
+...++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++..... .....+++++++|+.+++
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 95 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 95 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence 4445789999999999999999999987 99999999999999998864200 001358999999999998
Q ss_pred CCC-CCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 FAS-GFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ~~~-~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+.+ ++||+|++..+++|++.. ..+++++.|+|||||...++.+
T Consensus 96 ~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~ 141 (203)
T 1pjz_A 96 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 141 (203)
T ss_dssp HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 765 799999999999999754 3578999999999887544443
No 8
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.74 E-value=6.6e-17 Score=146.24 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=100.9
Q ss_pred HHHHHHHh----hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988 155 FKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (319)
Q Consensus 155 ~~~l~~~l----~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (319)
.+.+...+ ...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|+++....+ ...++.++.+|+.
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~ 142 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFL 142 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTT
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEEcCcc
Confidence 44555566 5567899999999999999999987 44 99999999999999999886643 2357999999999
Q ss_pred CCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 230 RLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++|+++++||+|++.++++|++++..+++++.++|||+|.+.+..+
T Consensus 143 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999889999999999999999999999999999999877665544
No 9
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.73 E-value=3.3e-17 Score=144.76 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
....+.+...+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|+++....+ ...++.++++|+.++
T Consensus 22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCTTC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECChHhC
Confidence 3345666677777788999999999999999999874 3499999999999999999887642 235799999999999
Q ss_pred CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++ +++||+|++..+++|++++..+++++.++|||||...+...
T Consensus 99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 87 78999999999999999999999999999998876665543
No 10
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.73 E-value=6.3e-17 Score=139.72 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=96.1
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--CCCCeEEEEcCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLP 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp 232 (319)
.+.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.|++++...+.. ...++.++++|+...+
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD 97 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence 35566666667889999999999999999999877679999999999999999997653200 0127999999998888
Q ss_pred CCCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCC
Q 020988 233 FASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLS 268 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~ 268 (319)
..+++||+|++..+++|++++ ..+++++.++|||+|
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 135 (217)
T 3jwh_A 98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI 135 (217)
T ss_dssp GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCE
Confidence 777899999999999999876 788999999999986
No 11
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.72 E-value=7.3e-17 Score=139.44 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=95.6
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--CCCCeEEEEcCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPF 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~ 233 (319)
+.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.|++++...+.. ...+++++++|+..+++
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 4555666667789999999999999999999887679999999999999999987653200 01279999999988888
Q ss_pred CCCCccEEEecccccCCCCH--HHHHHHHHHhhcCCC
Q 020988 234 ASGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLS 268 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~ 268 (319)
.+++||+|++..+++|++++ ..+++++.++|||+|
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 135 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQT 135 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCE
Confidence 78899999999999999876 688999999999976
No 12
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.72 E-value=5.4e-17 Score=139.44 Aligned_cols=115 Identities=22% Similarity=0.334 Sum_probs=97.8
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++ +|||||||+|.++..+++. +..+++|+|+|+.+++.|++++...+ ...++.++++|+.+++++
T Consensus 33 ~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 33 AENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN--LNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp HHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECBTTBCSSC
T ss_pred HHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc--ccCceEEEEcCHHHCCCC
Confidence 3455555554444 9999999999999999998 45599999999999999999987653 235899999999999998
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+++||+|++..+++|++++..+++++.++|+|+|...+.
T Consensus 109 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEE
Confidence 899999999999999999999999999999987765543
No 13
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.72 E-value=7.3e-17 Score=144.04 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=100.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....+ ...++.++.+|+.++|+++
T Consensus 51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECccccCCCCC
Confidence 445555666788999999999999999998864 3599999999999999999887642 2347999999999999988
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++..+++|++++..+++++.++|||+|...+..+
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999999999999999999998877666554
No 14
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.72 E-value=5.6e-17 Score=139.96 Aligned_cols=117 Identities=15% Similarity=0.289 Sum_probs=101.8
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
+.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.+++++...+ ..++.++.+|+.++++.
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG---LKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECBTTBCSSC
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEecccccCCCC
Confidence 345555666788999999999999999999985 55699999999999999999987652 34799999999999988
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||+|++..+++|++++..+++++.++|+|+|...+..+
T Consensus 104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 144 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDW 144 (219)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence 89999999999999999999999999999999877666554
No 15
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.71 E-value=9.8e-17 Score=143.01 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 152 DEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 152 ~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
......+...+. ..++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|++++...+ ...+++++++|+.+
T Consensus 31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG--LQNRVTGIVGSMDD 107 (267)
T ss_dssp HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTS
T ss_pred HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC--CCcCcEEEEcChhh
Confidence 334444555554 567899999999999999999988 55699999999999999999987653 23579999999999
Q ss_pred CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 231 LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+|+++++||+|++..+++|+ ++..+++++.++|||+|...+..+
T Consensus 108 ~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 108 LPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp CCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99888999999999999999 899999999999998876665544
No 16
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.71 E-value=9.3e-17 Score=142.54 Aligned_cols=109 Identities=19% Similarity=0.186 Sum_probs=89.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh---------cCc-----cCCCCeEEEEcCCCC
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---------DNT-----ILTSNLALVRADVCR 230 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~-----~~~~~i~~~~~d~~~ 230 (319)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+++... .+. ....+++++++|+.+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4788999999999999999999987 999999999999999877531 000 013589999999999
Q ss_pred CCCCC-CCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 231 LPFAS-GFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 231 lp~~~-~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++.+ ++||+|++..+++|++.. ..+++++.++|||||.+.++.+
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~ 192 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL 192 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 98764 899999999999999753 4689999999999887754433
No 17
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.6e-16 Score=144.09 Aligned_cols=123 Identities=18% Similarity=0.274 Sum_probs=102.4
Q ss_pred cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (319)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (319)
+....+.+..+.. .++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++... .....+++++++|+.
T Consensus 22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-PDTYKNVSFKISSSD 99 (299)
T ss_dssp CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC-C-CCTTEEEEECCTT
T ss_pred CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc-cCCCCceEEEEcCHH
Confidence 3444555555543 578999999999999999999753 5679999999999999999988663 012468999999999
Q ss_pred CCCCCC------CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 230 RLPFAS------GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 230 ~lp~~~------~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++++.+ ++||+|++..+++|+ ++..+++++.++|+|||.+.++.+.
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 998877 899999999999999 9999999999999998887765553
No 18
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.71 E-value=1.3e-16 Score=140.98 Aligned_cols=121 Identities=12% Similarity=0.172 Sum_probs=100.8
Q ss_pred cHHHHHHHHHHh-hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988 151 PDEEFKMAQEYF-KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (319)
Q Consensus 151 ~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (319)
.......+...+ ...++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.++++....+ ...+++++++|+.
T Consensus 30 ~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~ 106 (257)
T 3f4k_A 30 SPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMD 106 (257)
T ss_dssp CHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTT
T ss_pred CHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChh
Confidence 333444444554 345778999999999999999999975 499999999999999999987753 2345999999999
Q ss_pred CCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 230 RLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+|+++++||+|++..+++|+ ++..+++++.++|||+|...+...
T Consensus 107 ~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 107 NLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp SCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999888999999999999999 899999999999998876665543
No 19
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.70 E-value=1e-16 Score=141.52 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=98.2
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+...+...++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.++++.. ..++.++++|+.++++++
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~ 106 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEP 106 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCT
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCC
Confidence 3455556666789999999999999999999864 389999999999999999864 358999999999999888
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++..+++|++++..+++++.++|||+|.+.+.+.
T Consensus 107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999999999999999999999999998876655444
No 20
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.70 E-value=6.4e-17 Score=141.70 Aligned_cols=108 Identities=11% Similarity=0.100 Sum_probs=92.8
Q ss_pred HHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 158 AQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 158 l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
+.+.+. ..++.+|||||||+|.++..+++.++ +|+|+|+|+.+++.|+++.. .++.++++|+.++ +.++
T Consensus 33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~ 102 (250)
T 2p7i_A 33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPR 102 (250)
T ss_dssp HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSS
T ss_pred HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCC
Confidence 333443 35678999999999999999999887 89999999999999998752 2799999999887 4578
Q ss_pred CccEEEecccccCCCCHHHHHHHHH-HhhcCCCeeEEEEe
Q 020988 237 FVDAVHAGAALHCWPSPSNAASVFS-SSYSLLSICYLLQF 275 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~el~-rvlk~g~~~g~~~~ 275 (319)
+||+|++.++++|++++..+++++. ++|||+|...+..+
T Consensus 103 ~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 103 RYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9999999999999999999999999 99998877666555
No 21
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.70 E-value=8.5e-17 Score=143.16 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=97.0
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++ .++.++++|+.++|++
T Consensus 23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~---------~~~~~~~~d~~~~~~~ 91 (261)
T 3ege_A 23 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVVH---------PQVEWFTGYAENLALP 91 (261)
T ss_dssp HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCCC---------TTEEEECCCTTSCCSC
T ss_pred HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHhc---------cCCEEEECchhhCCCC
Confidence 3556666766788999999999999999999855 4999999999999877653 2899999999999998
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+++||+|++.++++|++++..+++++.++|| ||...++.+.
T Consensus 92 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 92 DKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 8999999999999999999999999999999 9887777664
No 22
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.70 E-value=1.2e-16 Score=137.60 Aligned_cols=111 Identities=12% Similarity=0.161 Sum_probs=93.2
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+...+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++.... .+++++++|+.+++ .+
T Consensus 41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRW-----SHISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTC-----SSEEEEECCTTTCC-CS
T ss_pred HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccC-----CCeEEEEcchhhCC-CC
Confidence 4455556667788999999999999999999875 9999999999999999987652 48999999999988 57
Q ss_pred CCccEEEecccccCCCCHH---HHHHHHHHhhcCCCeeEEEE
Q 020988 236 GFVDAVHAGAALHCWPSPS---NAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~ 274 (319)
++||+|++..+++|++++. .+++++.++|||+|.+.+..
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 8999999999999999985 55788888877766554433
No 23
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.70 E-value=1.2e-16 Score=142.95 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=97.9
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+ ..++.++.+|+.++++++++||+|+
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~ 110 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG---IKNVKFLQANIFSLPFEDSSFDHIF 110 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGCCSCTTCEEEEE
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEcccccCCCCCCCeeEEE
Confidence 3467899999999999999999999777899999999999999999987652 4589999999999998889999999
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+..+++|++++..+++++.++|||+|...+..
T Consensus 111 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 111 VCFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999999999999999987766554
No 24
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.70 E-value=1.2e-16 Score=141.64 Aligned_cols=116 Identities=9% Similarity=0.081 Sum_probs=99.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.... .+++++.+|+.++|+
T Consensus 43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~ 116 (266)
T 3ujc_A 43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDILTKEF 116 (266)
T ss_dssp HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCTTTCCC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECccccCCC
Confidence 34555555666788899999999999999999973 349999999999999999976441 689999999999999
Q ss_pred CCCCccEEEecccccCC--CCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCW--PSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++++||+|++..+++|+ +++..+++++.++|||+|...+..+
T Consensus 117 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 88999999999999999 7888999999999999877666655
No 25
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.70 E-value=1.8e-16 Score=138.22 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=97.6
Q ss_pred HHHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
.+.+...+. ..++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++... .++.++++|+.++++
T Consensus 32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~ 106 (234)
T 3dtn_A 32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDF 106 (234)
T ss_dssp HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTTTCCC
T ss_pred HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchhccCC
Confidence 344555554 45778999999999999999999976779999999999999999987653 389999999999988
Q ss_pred CCCCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
. ++||+|++..+++|++++. .+++++.++|||+|.+.+..+
T Consensus 107 ~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 107 E-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp C-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7 8999999999999998776 489999999999877665544
No 26
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.69 E-value=1.1e-16 Score=143.97 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEec
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~ 244 (319)
++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...+ ...++.++++|+.+++ +.+++||+|++.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 143 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKG--VSDNMQFIHCAAQDVASHLETPVDLILFH 143 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-C--CGGGEEEEESCGGGTGGGCSSCEEEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCcceEEEEcCHHHhhhhcCCCceEEEEC
Confidence 467999999999999999999865 99999999999999999987642 2258999999999987 778999999999
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+++|++++..+++++.++|||+|.+.+..+
T Consensus 144 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 144 AVLEWVADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp SCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred chhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999999999999887766655
No 27
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.69 E-value=2.5e-16 Score=139.39 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=93.9
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++.. ...++.++.+|+.++++++++||+|+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~ 109 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKIAG----VDRKVQVVQADARAIPLPDESVHGVI 109 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHTTT----SCTTEEEEESCTTSCCSCTTCEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhc----cCCceEEEEcccccCCCCCCCeeEEE
Confidence 345788999999999999999998865 999999999999999998722 35689999999999998889999999
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+..+++|++++..+++++.++|||+|...+.
T Consensus 110 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 110 VVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 9999999999999999999999998877655
No 28
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.69 E-value=2e-16 Score=136.60 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=95.6
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+.+.+...++.+|||||||+|.++..+++.+. +++|+|+|+.+++.+++++. .++.++.+|+.++++. +
T Consensus 36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~ 105 (220)
T 3hnr_A 36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-T 105 (220)
T ss_dssp HHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-S
T ss_pred HHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-C
Confidence 444455556789999999999999999999865 99999999999999999853 3789999999999887 8
Q ss_pred CccEEEecccccCCCCHHH--HHHHHHHhhcCCCeeEEEEe
Q 020988 237 FVDAVHAGAALHCWPSPSN--AASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~--~l~el~rvlk~g~~~g~~~~ 275 (319)
+||+|++..+++|++++.. +++++.++|||+|...+..+
T Consensus 106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 9999999999999999877 99999999999988776654
No 29
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.69 E-value=3e-16 Score=137.33 Aligned_cols=110 Identities=21% Similarity=0.350 Sum_probs=95.8
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+...+ .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++.. ..++.++++|+.++++++
T Consensus 45 ~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~ 114 (242)
T 3l8d_A 45 PFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERGE------GPDLSFIKGDLSSLPFEN 114 (242)
T ss_dssp HHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTTC------BTTEEEEECBTTBCSSCT
T ss_pred HHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhcc------cCCceEEEcchhcCCCCC
Confidence 3444443 3678999999999999999999866 99999999999999998752 368999999999999888
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++.++++|++++..+++++.++|+|+|...+..+
T Consensus 115 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 115 EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp TCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence 9999999999999999999999999999999877666554
No 30
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.69 E-value=1.5e-16 Score=135.69 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=93.5
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+..++.. .+.+|||||||+|.++..+++.+. +++|+|+|+.+++.++++. .++.++++|+.+++++++
T Consensus 33 ~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~ 101 (203)
T 3h2b_A 33 LIEPWATG-VDGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQTH--------PSVTFHHGTITDLSDSPK 101 (203)
T ss_dssp HHHHHHHH-CCSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHHC--------TTSEEECCCGGGGGGSCC
T ss_pred HHHHHhcc-CCCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHhC--------CCCeEEeCcccccccCCC
Confidence 33444433 388999999999999999999866 9999999999999999873 478999999999998889
Q ss_pred CccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 237 FVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+||+|++.++++|++ ++..+++++.++|||+|...+..+
T Consensus 102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 142 (203)
T 3h2b_A 102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF 142 (203)
T ss_dssp CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999999997 889999999999998877666555
No 31
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.69 E-value=6.6e-16 Score=130.89 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=96.0
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+.+.+...++.+|||||||+|.++..+++.+. +++|+|+|+.+++.+++++...+ ..++.++.+|+.++++ ++
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~ 96 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIEN---LDNLHTRVVDLNNLTF-DR 96 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECCGGGCCC-CC
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCC---CCCcEEEEcchhhCCC-CC
Confidence 445556666788999999999999999999865 99999999999999999887652 3479999999999888 78
Q ss_pred CccEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEE
Q 020988 237 FVDAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+||+|++..+++|++ ++..+++++.++|+|+|...++.
T Consensus 97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 999999999999998 77889999999999887655543
No 32
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.68 E-value=2.5e-16 Score=139.26 Aligned_cols=109 Identities=15% Similarity=0.114 Sum_probs=94.7
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (319)
+...+...++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++. .++.++.+|+.+++ .+++
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~-~~~~ 95 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL--------PNTNFGKADLATWK-PAQK 95 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS--------TTSEEEECCTTTCC-CSSC
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------CCcEEEECChhhcC-ccCC
Confidence 34445556788999999999999999999855569999999999999999872 47899999999988 7789
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 238 VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
||+|++..+++|++++..+++++.++|||+|.+.+...
T Consensus 96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 96 ADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp EEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 99999999999999999999999999998877666554
No 33
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.68 E-value=4.8e-16 Score=141.88 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=98.8
Q ss_pred HHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 156 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
+.+.+.+. ..++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|++++...+ ...++.++.+|+.++|+
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~ 181 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPF 181 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhcCCC
Confidence 34445555 567889999999999999999988 54 99999999999999999987753 23579999999999998
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++++||+|++..+++|+ ++..+++++.++|||||.+.+...
T Consensus 182 ~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 182 DKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp CTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 88999999999999999 699999999999999887666554
No 34
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.68 E-value=3.9e-16 Score=140.63 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=95.5
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (319)
...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|++++... ..++.++++|+.++++. ++||+|
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~~fD~v 93 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIELN-DKYDIA 93 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCCS-SCEEEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEEcchhhcCcC-CCeeEE
Confidence 456789999999999999999998865 369999999999999999998763 34899999999999884 699999
Q ss_pred EecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 242 HAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++..+++|++++..+++++.++|||||...+..+.
T Consensus 94 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 94 ICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99999999999999999999999998776655543
No 35
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.67 E-value=2.1e-16 Score=141.87 Aligned_cols=108 Identities=21% Similarity=0.282 Sum_probs=94.1
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++. .++.++.+|+..+|+ ++
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~ 116 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNY--------PHLHFDVADARNFRV-DK 116 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCCC-SS
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCCc-CC
Confidence 44456666778999999999999999999854 49999999999999999874 478899999999987 57
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+||+|++..+++|++|+..+++++.++|||+|.+.+...
T Consensus 117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999999999999999999999999877665544
No 36
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.67 E-value=9.1e-16 Score=139.27 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=97.5
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++...+ ...+++++.+|+.++ +
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC---C
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECCHHHc---C
Confidence 3445555567888999999999999999998832 499999999999999999987753 234799999999876 6
Q ss_pred CCccEEEecccccCCCCH---------HHHHHHHHHhhcCCCeeEEEEee
Q 020988 236 GFVDAVHAGAALHCWPSP---------SNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~---------~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++||+|++..+++|++|+ ..+++++.++|||+|.+.+..+.
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 185 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 185 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 899999999999999887 68899999999999988777663
No 37
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.66 E-value=4.6e-16 Score=135.94 Aligned_cols=105 Identities=17% Similarity=0.119 Sum_probs=89.9
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
++++|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++....+ ...++.++++|+.+++. +++||+|++..
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~-~~~fD~v~~~~ 140 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSSP--KAEYFSFVKEDVFTWRP-TELFDLIFDYV 140 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTSG--GGGGEEEECCCTTTCCC-SSCEEEEEEES
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhccC--CCcceEEEECchhcCCC-CCCeeEEEECh
Confidence 456999999999999999988655 99999999999999999886521 13469999999999874 56999999999
Q ss_pred cccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 246 ALHCWP--SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 246 vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++|++ ++..+++++.++|||+|.+.+..+
T Consensus 141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172 (235)
T ss_dssp STTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 999998 888999999999999887665555
No 38
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.66 E-value=5.8e-16 Score=135.44 Aligned_cols=113 Identities=23% Similarity=0.252 Sum_probs=97.3
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+...+...++.+|||||||+|.++..+++.+. .+++|+|+|+.+++.++++... .++.++++|+..+++++
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~ 105 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHLPQ 105 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCCCT
T ss_pred HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccCCC
Confidence 3556667667889999999999999999998753 4899999999999999987643 37999999999988888
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++..+++|++++..+++++.++|+|+|.+.+...
T Consensus 106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 8999999999999999999999999999998876655443
No 39
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.66 E-value=4.5e-16 Score=140.42 Aligned_cols=122 Identities=18% Similarity=0.116 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCR 230 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~ 230 (319)
....+.+...+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++....+. ....++.+..+|+..
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 33456666777777889999999999999999999877 999999999999999987633210 012478899999988
Q ss_pred CC---CCCCCccEEEec-ccccCCCC-------HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 231 LP---FASGFVDAVHAG-AALHCWPS-------PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 231 lp---~~~~~fD~V~~~-~vl~h~~d-------~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++ +.+++||+|++. .+++|+++ +..+++++.++|||||.+.+...
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 87 778999999998 89999999 88999999999988776554444
No 40
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.66 E-value=1e-15 Score=131.34 Aligned_cols=99 Identities=21% Similarity=0.166 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
++.+|||||||+|.++..+ + ..+++|+|+|+.+++.++++. .++.++.+|+.++|+++++||+|++.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFPGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCCCCcEEEEEEcC
Confidence 7889999999999998877 2 238999999999999999874 478999999999998889999999999
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+++|++++..+++++.++|||+|...+..+.
T Consensus 104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 104 TLEFVEDVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp CTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9999999999999999999998877666553
No 41
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=132.65 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=91.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++.++. +++|+|+|+.+++.++++... ..++.++++|+.++++++++||+|++.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 114 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLDFPSASFDVVLEK 114 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCCSCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCCCCCCcccEEEEC
Confidence 56789999999999999999998753 899999999999999998753 358999999999998888899999999
Q ss_pred ccccCCC---------------CHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988 245 AALHCWP---------------SPSNAASVFSSSYSLLSICYLLQFRY 277 (319)
Q Consensus 245 ~vl~h~~---------------d~~~~l~el~rvlk~g~~~g~~~~~~ 277 (319)
.+++|+. ++..+++++.++|||+|...+..+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 115 GTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp SHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 9887765 55788999999998887666665543
No 42
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.66 E-value=1e-15 Score=130.95 Aligned_cols=107 Identities=15% Similarity=0.232 Sum_probs=90.0
Q ss_pred ccCCCeEEEEcCCcChH-HHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 164 SAQGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~-~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
..++.+|||+|||+|.+ ...+.+.+. +|+|+|+|+.+++.++++.... ..++.++++|+.++++++++||+|+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~ 94 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSREN----NFKLNISKGDIRKLPFKDESMSFVY 94 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC--EEEEEECCHHHHHHHHHHHHHH----TCCCCEEECCTTSCCSCTTCEEEEE
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEECchhhCCCCCCceeEEE
Confidence 45678999999999997 455555444 9999999999999999988664 2578999999999998889999999
Q ss_pred ecccccCC--CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 243 AGAALHCW--PSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 243 ~~~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+..+++|+ .++..+++++.++|||+|...+..+.
T Consensus 95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999 56778899999999988776666553
No 43
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.66 E-value=1.2e-15 Score=131.05 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=92.6
Q ss_pred HHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 157 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
.+.+.+. ..++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++. ...++.++.+|+.++ +.+
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~-------~~~~~~~~~~d~~~~-~~~ 105 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGRH-------GLDNVEFRQQDLFDW-TPD 105 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGGG-------CCTTEEEEECCTTSC-CCS
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHhc-------CCCCeEEEecccccC-CCC
Confidence 3444443 55678999999999999999999865 999999999999999882 236899999999988 678
Q ss_pred CCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++..+++|++++ ..+++++.++|+|+|...+..+
T Consensus 106 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 899999999999999986 7889999999998877666655
No 44
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.65 E-value=3.4e-16 Score=141.55 Aligned_cols=110 Identities=9% Similarity=0.044 Sum_probs=84.3
Q ss_pred cCCCeEEEEcCCcChHHH----HHHhhCCCCeE--EEEeCCHHHHHHHHHHHhhcCccCCCCeEE--EEcCCCCCC----
Q 020988 165 AQGGLLVDVSCGSGLFSR----KFAKSGTYSGV--VALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCRLP---- 232 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~----~l~~~g~~~~v--~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~--~~~d~~~lp---- 232 (319)
.++.+|||||||+|.++. .+...++...+ +|+|+|++|++.|++++.... ...++.+ ..+++++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS--NLENVKFAWHKETSSEYQSRML 128 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS--SCTTEEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc--CCCcceEEEEecchhhhhhhhc
Confidence 456799999999997654 33444455544 999999999999999876421 1234544 455555443
Q ss_pred --CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 233 --FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 233 --~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+.+++||+|++.+++||++|+..++++++|+|||||.+.+....
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 55789999999999999999999999999999999887776553
No 45
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.65 E-value=1.9e-15 Score=135.95 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=95.6
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
.+.+.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.+++++...+ ...++.++.+|+.++|
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~--- 127 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV--NVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD--- 127 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC---
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCC---
Confidence 3444455667889999999999999999854 44 99999999999999999987642 2358999999998776
Q ss_pred CCccEEEecccccCC--CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 236 GFVDAVHAGAALHCW--PSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++||+|++..+++|+ .++..+++++.++|||+|...+..+.
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 789999999999999 67899999999999999988776664
No 46
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.65 E-value=1e-15 Score=143.88 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=95.8
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhc-----CccCCCCeEEEEcCCCCC------
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQD-----NTILTSNLALVRADVCRL------ 231 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~i~~~~~d~~~l------ 231 (319)
..++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++++.. +.....++.++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4578899999999999999998873 5679999999999999999987542 101236899999999987
Q ss_pred CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++++++||+|++..+++|++++..+++++.++|||||.+.+..+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 88889999999999999999999999999999999887666543
No 47
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.64 E-value=5.5e-16 Score=128.48 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=90.9
Q ss_pred HHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988 159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (319)
Q Consensus 159 ~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (319)
.+.+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.++++ ..++.++.+| +++++++|
T Consensus 10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~ 76 (170)
T 3i9f_A 10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSV 76 (170)
T ss_dssp HHHHHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCE
T ss_pred HHhcCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCce
Confidence 3445566788999999999999999999875 999999999999999987 2488999998 67778899
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
|+|++..+++|++++..+++++.++|||+|...+..+
T Consensus 77 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 77 DFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp EEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 9999999999999999999999999998876666554
No 48
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.64 E-value=7.9e-16 Score=135.60 Aligned_cols=111 Identities=8% Similarity=0.014 Sum_probs=93.2
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (319)
+...+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++.... .++.++++|+..+++++++
T Consensus 85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~~ 158 (254)
T 1xtp_A 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCSSC
T ss_pred HHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCCCCCCC
Confidence 3344455578999999999999999998886 357999999999999999987542 5799999999999888889
Q ss_pred ccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEE
Q 020988 238 VDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 238 fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~ 274 (319)
||+|++..+++|+++ +..+++++.++|||+|.+.+..
T Consensus 159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999999999954 7788999999998876555443
No 49
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.64 E-value=1.9e-15 Score=131.30 Aligned_cols=109 Identities=19% Similarity=0.282 Sum_probs=93.5
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--CCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....+.. ...++.++.+|+..+++.+++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 4678999999999999999999865 9999999999999999988654210 01368999999999998889999999
Q ss_pred ecccccCCCCHH---HHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGAALHCWPSPS---NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~~ 275 (319)
+..+++|++++. .+++++.++|+|+|...+..+
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 999999999998 889999999988877666554
No 50
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.63 E-value=2.7e-15 Score=133.94 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=96.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHH------HHHHHHHHHhhcCccCCCCeEEEEcC-
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSEN------MLRQCYDFIKQDNTILTSNLALVRAD- 227 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~------~l~~a~~~~~~~~~~~~~~i~~~~~d- 227 (319)
..+.+.+...++.+|||||||+|.++..+++. ++..+|+|+|+|+. +++.|++++...+ ...+++++.+|
T Consensus 33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP--LGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST--TGGGEEEECSCC
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC--CCCceEEEECCh
Confidence 34555566678899999999999999999988 45579999999997 9999999987642 12579999998
Q ss_pred --CCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 228 --VCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 228 --~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
...+|+++++||+|++.++++|++++..+++.+.++++++|...+..+
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 456677789999999999999999999877777777777887666554
No 51
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.63 E-value=1.6e-14 Score=123.49 Aligned_cols=118 Identities=15% Similarity=0.028 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
.+....+...+...++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.|+++++..+ ..+++++.+|+.+.
T Consensus 26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~ 102 (204)
T 3e05_A 26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV---ARNVTLVEAFAPEG 102 (204)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT---CTTEEEEECCTTTT
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeCChhhh
Confidence 334455666777788899999999999999999999877799999999999999999987653 36899999999765
Q ss_pred CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
....++||+|++..+++ ++..+++++.++|+|+|...+...
T Consensus 103 ~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 103 LDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEec
Confidence 43447899999988776 788999999999999998776655
No 52
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.63 E-value=2e-15 Score=132.06 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=89.7
Q ss_pred HHHHHHhhcc--CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 156 ~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
+.+.+.+... ++.+|||||||+|.++..+++.+. +++|+|+|+.+++.++++.... ..++.++++|+.++++
T Consensus 25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~ 98 (246)
T 1y8c_A 25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNI 98 (246)
T ss_dssp HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCC
T ss_pred HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhc----CCCeEEEecccccCCc
Confidence 4455555443 778999999999999999999876 9999999999999999988764 2378999999999887
Q ss_pred CCCCccEEEecc-cccCCC---CHHHHHHHHHHhhcCCCeeEE
Q 020988 234 ASGFVDAVHAGA-ALHCWP---SPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 234 ~~~~fD~V~~~~-vl~h~~---d~~~~l~el~rvlk~g~~~g~ 272 (319)
+ ++||+|++.. +++|++ ++..+++++.++|+|+|.+.+
T Consensus 99 ~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 99 N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred c-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 6 8999999998 999994 456677777777777655443
No 53
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.62 E-value=1.6e-15 Score=132.97 Aligned_cols=106 Identities=10% Similarity=0.100 Sum_probs=90.8
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+ ..++.++.+|+..+++.+++||+|++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWIQW 154 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence 57899999999999999988876 4599999999999999999886531 2468999999999888878999999999
Q ss_pred cccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 246 ALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 246 vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++|++++. .+++++.++|+|+|.+.+..+
T Consensus 155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 999998865 889999999988776655443
No 54
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.62 E-value=1.7e-15 Score=130.07 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=87.1
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++. ++.++.+|+..++ .+++||+|++.
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~-~~~~fD~v~~~ 109 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD-AIDAYDAVWAH 109 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC-CCSCEEEEEEC
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC-CCCcEEEEEec
Confidence 4678999999999999999999865 9999999999999999886 4568889999988 67899999999
Q ss_pred ccccCCC--CHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWP--SPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+++|++ ++..+++++.++|||+|.+.+...
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 142 (211)
T 3e23_A 110 ACLLHVPRDELADVLKLIWRALKPGGLFYASYK 142 (211)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 9999998 777899999999998876655543
No 55
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.62 E-value=4.6e-15 Score=135.54 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=96.0
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
.+.+.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|+++....+ ...++.++.+|+.++|
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~--- 153 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDFA--- 153 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGCC---
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChHHCC---
Confidence 3444455567889999999999999999987 55 99999999999999999987642 2356999999998875
Q ss_pred CCccEEEecccccCC--CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 236 GFVDAVHAGAALHCW--PSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++||+|++..+++|+ +++..+++++.++|||+|...+..+.
T Consensus 154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 789999999999999 57889999999999999988777664
No 56
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.62 E-value=4.6e-15 Score=133.42 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=93.8
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (319)
+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+ .+++++++|+..+++ +++
T Consensus 112 ~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-~~~ 184 (286)
T 3m70_A 112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKEN----LNISTALYDINAANI-QEN 184 (286)
T ss_dssp HHHHHHHSCSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCGGGCCC-CSC
T ss_pred HHHHhhccCCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHcC----CceEEEEeccccccc-cCC
Confidence 33444455789999999999999999999876 99999999999999999987752 389999999999887 789
Q ss_pred ccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 238 VDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
||+|++..+++|++++ ..+++++.++|+|+|.+.++..
T Consensus 185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp EEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999999654 4889999999988877655443
No 57
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.62 E-value=3e-15 Score=129.56 Aligned_cols=104 Identities=22% Similarity=0.270 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
++.+|||||||+|.++..+++.++ +++|+|+|+.+++.|+++.... ..+++++.+|+.++++++++||+|++..
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 111 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFEDKTFDYVIFID 111 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEECchhcCCCCCCcEEEEEEcC
Confidence 478999999999999999999887 9999999999999999988764 3689999999999888888999999999
Q ss_pred c--ccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 246 A--LHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 246 v--l~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+ ++|.+++..+++++.++|+|+|...+..+
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 112 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 9 55666778899999999998776655544
No 58
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.62 E-value=8.2e-15 Score=131.89 Aligned_cols=136 Identities=10% Similarity=-0.036 Sum_probs=101.4
Q ss_pred hhHHhHHhHHHhhhhC--------CCCCcHHH---HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCC
Q 020988 131 VSFLYERGWRQNFNRS--------GFPGPDEE---FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199 (319)
Q Consensus 131 ~s~~~~~~w~~~~~~~--------~~~~~~~~---~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s 199 (319)
....+|..|.+.+... .++..+.. .+.-..++...++.+|||||||+|.++..+....+..+|+|+|+|
T Consensus 76 ~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis 155 (298)
T 3fpf_A 76 LGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIE 155 (298)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECC
Confidence 3445677788877332 12222221 222223456778999999999999876554444345699999999
Q ss_pred HHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 200 ~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+++++.|+++++..+ ..+++++++|+.+++ +++||+|++... .+++.++++++.++|||||.+.+..
T Consensus 156 ~~~l~~Ar~~~~~~g---l~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 156 PDIAELSRKVIEGLG---VDGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp HHHHHHHHHHHHHHT---CCSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHHHHHHHHhcC---CCCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 999999999987753 268999999999876 689999998655 5789999999999999999776544
No 59
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.62 E-value=5.3e-15 Score=147.68 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=96.3
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCc---cCCCCeEEEEcCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNT---ILTSNLALVRADVCR 230 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~i~~~~~d~~~ 230 (319)
.+.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.|++.|++++..... ....+++++++|+.+
T Consensus 710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d 789 (950)
T 3htx_A 710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789 (950)
T ss_dssp HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence 5556667766788999999999999999999987 446999999999999999997654210 123589999999999
Q ss_pred CCCCCCCccEEEecccccCCCCHH--HHHHHHHHhhcCC
Q 020988 231 LPFASGFVDAVHAGAALHCWPSPS--NAASVFSSSYSLL 267 (319)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g 267 (319)
+++.+++||+|++..+++|++++. .+++++.++||||
T Consensus 790 Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 790 FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK 828 (950)
T ss_dssp CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 999889999999999999998876 4889999999998
No 60
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.62 E-value=1.8e-15 Score=132.61 Aligned_cols=99 Identities=17% Similarity=0.288 Sum_probs=87.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 242 (319)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++ +.++.+|+.+. ++++++||+|+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~~~~~~~~~~fD~i~ 106 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEGK-----------FNVVKSDAIEYLKSLPDKYLDGVM 106 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHTT-----------SEEECSCHHHHHHTSCTTCBSEEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHhh-----------cceeeccHHHHhhhcCCCCeeEEE
Confidence 4678999999999999999999876 899999999999998863 67889998775 77889999999
Q ss_pred ecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEee
Q 020988 243 AGAALHCWPSP--SNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 243 ~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+..+++|++++ ..+++++.++|||+|.+.+..+.
T Consensus 107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99999999965 89999999999999988776654
No 61
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.60 E-value=8.8e-15 Score=129.92 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=83.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++. .++.++++|+.++++ +++||+|++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~fD~v~~~ 117 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRN--------PDAVLHHGDMRDFSL-GRRFSAVTCM 117 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTCCC-SCCEEEEEEC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCEEEECChHHCCc-cCCcCEEEEc
Confidence 3568999999999999999999876 9999999999999999874 378999999999987 6899999999
Q ss_pred c-cccCCCCHH---HHHHHHHHhhcCCCeeEEEEeec
Q 020988 245 A-ALHCWPSPS---NAASVFSSSYSLLSICYLLQFRY 277 (319)
Q Consensus 245 ~-vl~h~~d~~---~~l~el~rvlk~g~~~g~~~~~~ 277 (319)
. +++|++++. .+++++.++|||+ |.+++..
T Consensus 118 ~~~l~~~~~~~~~~~~l~~~~~~L~pg---G~l~i~~ 151 (263)
T 3pfg_A 118 FSSIGHLAGQAELDAALERFAAHVLPD---GVVVVEP 151 (263)
T ss_dssp TTGGGGSCHHHHHHHHHHHHHHTEEEE---EEEEECC
T ss_pred CchhhhcCCHHHHHHHHHHHHHhcCCC---cEEEEEe
Confidence 8 999997544 5567777776654 5566643
No 62
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.60 E-value=1.4e-15 Score=129.56 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=85.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++ +|||||||+|.++..+++.+. +|+|+|+|+.+++.++++.... ..++.++++|+.++++++++||+|++.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEK----GVKITTVQSNLADFDIVADAWEGIVSI 101 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHH----TCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEEcChhhcCCCcCCccEEEEE
Confidence 345 999999999999999998865 9999999999999999988764 237999999999998888899999995
Q ss_pred ccccCC--CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 245 AALHCW--PSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 245 ~vl~h~--~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
. .|+ .++..+++++.++|+|+|...+..+.
T Consensus 102 ~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 102 F--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp C--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred h--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 3 455 35667888888898888776666553
No 63
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.59 E-value=1.4e-15 Score=133.61 Aligned_cols=103 Identities=10% Similarity=0.112 Sum_probs=87.4
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAV 241 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V 241 (319)
..++++|||||||+|..+..+++..+ .+++|||+|+.+++.|+++.... ..++.++.+|+..+ ++++++||.|
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~FD~i 132 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGI 132 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC----CCceEEEeehHHhhcccccccCCceE
Confidence 45789999999999999999988754 58999999999999999998764 46788889887653 5678899999
Q ss_pred Ee-----cccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 242 HA-----GAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 242 ~~-----~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
+. ..+++|++++..+++++.|+|||||.+.
T Consensus 133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~ 167 (236)
T 3orh_A 133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred EEeeeecccchhhhcchhhhhhhhhheeCCCCEEE
Confidence 74 5678899999999999999999887654
No 64
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.59 E-value=7.6e-15 Score=130.31 Aligned_cols=100 Identities=24% Similarity=0.217 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
++.+|||||||+|.++..+++.+. +++|+|+|+.+++.++++.. .+ ++++|+.++++++++||+|++.+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~-------~~--~~~~d~~~~~~~~~~fD~v~~~~ 122 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV-------KN--VVEAKAEDLPFPSGAFEAVLALG 122 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC-------SC--EEECCTTSCCSCTTCEEEEEECS
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC-------CC--EEECcHHHCCCCCCCEEEEEEcc
Confidence 678999999999999999998865 99999999999999998752 12 88999999998889999999998
Q ss_pred cccCC-CCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 246 ALHCW-PSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 246 vl~h~-~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+++|+ +++..+++++.++|||+|...+..+.
T Consensus 123 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 123 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 77765 78999999999999998776665553
No 65
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.59 E-value=4.3e-15 Score=135.10 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=90.7
Q ss_pred ccCCCeEEEEcCCcChHHHHHH-hhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~-~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
..++.+|||||||+|.++..++ ...+..+|+|+|+|+.+++.|++++...+ ...+++++++|+.+++++ ++||+|+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~fD~v~ 192 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHRQDAWKLDTR-EGYDLLT 192 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECchhcCCcc-CCeEEEE
Confidence 4678899999999999999885 44566799999999999999999987642 223599999999999987 8999999
Q ss_pred ecccccCCCCHHH---HHHHHHHhhcCCCeeEEEE
Q 020988 243 AGAALHCWPSPSN---AASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 243 ~~~vl~h~~d~~~---~l~el~rvlk~g~~~g~~~ 274 (319)
+..+++|++++.. +++++.++|||||.+.+..
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999999999986 5888888888876555443
No 66
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.59 E-value=1.3e-14 Score=120.81 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA 234 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~ 234 (319)
..+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+ ...++ ++.+|..+ ++..
T Consensus 15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG--VSDRI-AVQQGAPRAFDDV 91 (178)
T ss_dssp HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT--CTTSE-EEECCTTGGGGGC
T ss_pred HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC--CCCCE-EEecchHhhhhcc
Confidence 45556666778889999999999999999998666799999999999999999987652 22378 88888754 3433
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||+|++..+++| ...++++.++|+|+|...+..+
T Consensus 92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEee
Confidence 379999999999988 5678999999999987765554
No 67
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.58 E-value=5.6e-15 Score=129.73 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=91.7
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC-----CCc
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-----GFV 238 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-----~~f 238 (319)
..++.+|||||||+|.++..+++.++ +|+|+|+|+.+++.++++.. ..+++++++|+.+++... .+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~ 125 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGD 125 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCc
Confidence 35678999999999999999999987 99999999999999999873 348999999999875432 349
Q ss_pred cEEEecccccCCC--CHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 239 DAVHAGAALHCWP--SPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 239 D~V~~~~vl~h~~--d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
|+|++..+++|++ ++..+++++.++|||+|.+.+..+.
T Consensus 126 d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 126 ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp CEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999999999999 7889999999999999988777663
No 68
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.58 E-value=9.9e-15 Score=132.22 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=92.3
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+.. ++++|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...+.....++.++++|+.++++
T Consensus 71 ~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 71 EAREFATRTGP-VSGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 34455555543 345999999999999999999875 999999999999999999876311001579999999999987
Q ss_pred CCCCccEEEec-ccccCCCC--HHHHHHHHHHhhcCCCeeEEEEee
Q 020988 234 ASGFVDAVHAG-AALHCWPS--PSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 234 ~~~~fD~V~~~-~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+++||+|++. .+++|++. ...+++++.++|||+|.+.+..+.
T Consensus 148 -~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 148 -DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp -SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 6899999865 56777652 468889999999888766655553
No 69
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.58 E-value=4.1e-14 Score=126.97 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=90.5
Q ss_pred cCCCeEEEEcCCc---ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---------
Q 020988 165 AQGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------- 232 (319)
Q Consensus 165 ~~~~~VLDiGcG~---G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------- 232 (319)
....+|||||||+ |.++..+.+..+..+|+++|+|+.|++.|++++.. ..+++++++|+.+.+
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~ 150 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVR 150 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhh
Confidence 3457999999999 99888777777777999999999999999998853 358999999997631
Q ss_pred --CCCCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEee
Q 020988 233 --FASGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 233 --~~~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+...+||+|++..+|||+++ +..+++++.++|+|||.+.+..+.
T Consensus 151 ~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 151 RMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp HHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred ccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 22248999999999999998 789999999999999988777664
No 70
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.57 E-value=9.4e-14 Score=119.10 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=91.3
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
....+...+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++++..+ ...++.++.+|+.+...
T Consensus 43 ~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~ 118 (204)
T 3njr_A 43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDTYG--LSPRMRAVQGTAPAALA 118 (204)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCTTGGGT
T ss_pred HHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEeCchhhhcc
Confidence 33455666777788999999999999999999884 499999999999999999987653 12389999999988332
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
...+||+|++..++ ++. +++++.++|||+|...+...
T Consensus 119 ~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 119 DLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp TSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred cCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 34689999987754 566 89999999999987766555
No 71
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.57 E-value=2.6e-14 Score=120.73 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=86.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 242 (319)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++..+ ..+++++++|+.+++ +.+++||+|+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~fD~i~ 118 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALG---LSGATLRRGAVAAVVAAGTTSPVDLVL 118 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHT---CSCEEEEESCHHHHHHHCCSSCCSEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEEccHHHHHhhccCCCccEEE
Confidence 578899999999999999887764 3589999999999999999987753 358999999998764 3468999999
Q ss_pred ecccccCC-CCHHHHHHHHHH--hhcCCCeeEE
Q 020988 243 AGAALHCW-PSPSNAASVFSS--SYSLLSICYL 272 (319)
Q Consensus 243 ~~~vl~h~-~d~~~~l~el~r--vlk~g~~~g~ 272 (319)
+...+++. ++....++++.+ +|+|+|.+.+
T Consensus 119 ~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~ 151 (189)
T 3p9n_A 119 ADPPYNVDSADVDAILAALGTNGWTREGTVAVV 151 (189)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEE
T ss_pred ECCCCCcchhhHHHHHHHHHhcCccCCCeEEEE
Confidence 99887775 567788888888 8888775544
No 72
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.56 E-value=3.8e-14 Score=119.10 Aligned_cols=117 Identities=12% Similarity=0.139 Sum_probs=94.4
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCC--eEEEEcCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCRL 231 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--i~~~~~d~~~l 231 (319)
..+.+.+.+...++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++...+ ..+ +.++.+|+.+
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~~d~~~- 113 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYE- 113 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTT-
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECchhc-
Confidence 44566667766688999999999999999999884 499999999999999999987642 334 9999999987
Q ss_pred CCCCCCccEEEecccccC-CCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 232 PFASGFVDAVHAGAALHC-WPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h-~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++.+++||+|++..+++| ..+...+++++.++|+|+|...+....
T Consensus 114 ~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 114 NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 344679999999988887 345668889999998887766665554
No 73
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.56 E-value=5e-15 Score=129.61 Aligned_cols=105 Identities=10% Similarity=0.115 Sum_probs=83.9
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAV 241 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V 241 (319)
..++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.|+++.... ..++.++++|+.++ ++++++||+|
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~V 132 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGI 132 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhc----CCCeEEEecCHHHhhcccCCCceEEE
Confidence 35678999999999999999977543 48999999999999999988664 35799999999888 8888999999
Q ss_pred Ee-cccc--c--CCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 242 HA-GAAL--H--CWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 242 ~~-~~vl--~--h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
++ .+++ + |..+...+++++.|+|||+|.+.++
T Consensus 133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 99 5543 1 2223346789999999887765433
No 74
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.56 E-value=6.6e-15 Score=133.25 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=84.5
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-----------------------------
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI----------------------------- 216 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------------------------- 216 (319)
++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 678999999999999999999866679999999999999999986543100
Q ss_pred --------------------------CCCCeEEEEcCCCCCC-----CCCCCccEEEecccccCCC------CHHHHHHH
Q 020988 217 --------------------------LTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWP------SPSNAASV 259 (319)
Q Consensus 217 --------------------------~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~------d~~~~l~e 259 (319)
...++.++++|+...+ +.+++||+|++..+++|+. ++..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 1158999999998654 5678999999999998875 66778888
Q ss_pred HHHhhcCCCee
Q 020988 260 FSSSYSLLSIC 270 (319)
Q Consensus 260 l~rvlk~g~~~ 270 (319)
+.++|+|||.+
T Consensus 206 ~~~~LkpGG~l 216 (292)
T 3g07_A 206 IYRHLRPGGIL 216 (292)
T ss_dssp HHHHEEEEEEE
T ss_pred HHHHhCCCcEE
Confidence 88888877543
No 75
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.56 E-value=4e-14 Score=121.29 Aligned_cols=108 Identities=17% Similarity=0.097 Sum_probs=89.4
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
....+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...+ ..+++++.+|+.+.+.
T Consensus 65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~ 139 (210)
T 3lbf_A 65 MVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLD---LHNVSTRHGDGWQGWQ 139 (210)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCG
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcC---CCceEEEECCcccCCc
Confidence 345566677778899999999999999999999865 99999999999999999987652 3579999999988766
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
.+++||+|++..+++|+++ ++.++|||+|...+
T Consensus 140 ~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~ 172 (210)
T 3lbf_A 140 ARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVL 172 (210)
T ss_dssp GGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEE
T ss_pred cCCCccEEEEccchhhhhH------HHHHhcccCcEEEE
Confidence 6789999999999999976 46677776654433
No 76
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.55 E-value=1.3e-14 Score=121.86 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=83.5
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEe
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA 243 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~ 243 (319)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++..+ ..++++++++...++ +.+++||+|++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~--~v~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSK--KVYAFDVQEQALGKTSQRLSDLG---IENTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHHT---CCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence 4688999999999999999998854 99999999999999999987753 368999998877753 44688999988
Q ss_pred cc-cccC-------C-CCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 244 GA-ALHC-------W-PSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 244 ~~-vl~h-------~-~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.. .+++ . .+...+++++.++|||||.+.+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 73 3332 1 2334677899999999888877766
No 77
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.55 E-value=1.6e-14 Score=124.87 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=87.8
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC--CCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS 235 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~ 235 (319)
+.+.+. .++.+|||||||+|.++..+++.+ .+++|+|+|+.+++.++++. ..++.+|+.. .++++
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~~ 91 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEKL----------DHVVLGDIETMDMPYEE 91 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTTS----------SEEEESCTTTCCCCSCT
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhC----------CcEEEcchhhcCCCCCC
Confidence 334444 578899999999999999999884 59999999999999998753 2688999876 66777
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++.++++|++++..+++++.++++|+|...+...
T Consensus 92 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 92 EQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp TCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred CccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8999999999999999999999999999888766555443
No 78
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.55 E-value=3.2e-14 Score=128.12 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=89.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-CCCCccEEEe
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA 243 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~ 243 (319)
.++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+ ...++.++++|+.++++ .+++||+|++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVISS 139 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CCccEEEEECCccccccCCCCCcCEEEE
Confidence 578899999999999999988875 4589999999999999999987642 12468999999999887 5789999999
Q ss_pred cccccC----CCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 244 GAALHC----WPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 244 ~~vl~h----~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..+++| ..++..+++++.++|||+|.+.+...
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999977 45667888999999888776655544
No 79
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.55 E-value=5.7e-14 Score=122.37 Aligned_cols=100 Identities=19% Similarity=0.268 Sum_probs=82.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe-
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA- 243 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~- 243 (319)
.++.+|||||||+|.++..+++.++ +++|+|+|+.+++.++++. .++.++.+|+.++++ +++||+|++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL--------PDATLHQGDMRDFRL-GRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC--------TTCEEEECCTTTCCC-SSCEEEEEEC
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC--------CCCEEEECCHHHccc-CCCCcEEEEc
Confidence 5678999999999999999999877 9999999999999999874 468999999999887 689999995
Q ss_pred cccccCCCCHH---HHHHHHHHhhcCCCeeEEEEeecc
Q 020988 244 GAALHCWPSPS---NAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 244 ~~vl~h~~d~~---~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
..+++|++++. .+++++.++|+| +|.+++...
T Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~ 142 (239)
T 3bxo_A 108 FSSVGYLKTTEELGAAVASFAEHLEP---GGVVVVEPW 142 (239)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHTEEE---EEEEEECCC
T ss_pred CchHhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEec
Confidence 55999997654 556666666555 556666443
No 80
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.55 E-value=2e-14 Score=130.85 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccC---CCCeEEEEcCC------CCC--CCC
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---TSNLALVRADV------CRL--PFA 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~~i~~~~~d~------~~l--p~~ 234 (319)
++.+|||||||+|..+..++..+ ..+|+|+|+|+.|++.|+++....+... ..++++.+.|+ .++ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 57899999999998766555543 2489999999999999999886542000 00267888887 322 345
Q ss_pred CCCccEEEecccccCC---CCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCW---PSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~---~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||+|+|..++||+ .+...+++++.++|||||.+.....
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 6899999999999875 4567889999999999887654444
No 81
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.54 E-value=5.3e-14 Score=121.59 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
++.+|||||||+|.++..+++. +|+|+|+.+++.++++ ++.++.+|+..+++++++||+|++..
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~ 110 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVT 110 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEES
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcc
Confidence 3789999999999999888653 9999999999999874 67899999999998888999999999
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++|++++..+++++.++|+|+|...+..+
T Consensus 111 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 140 (219)
T 1vlm_A 111 TICFVDDPERALKEAYRILKKGGYLIVGIV 140 (219)
T ss_dssp CGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHhhccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999998876665544
No 82
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.54 E-value=1.1e-13 Score=119.32 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=89.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 242 (319)
.++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++...+ ..++.++++|+.+++ +++++||+|+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~D~i~ 116 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLY 116 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCCCCCCEEE
Confidence 45789999999999999999999877799999999999999999987653 368999999999877 7778999999
Q ss_pred ecccccCCC--------CHHHHHHHHHHhhcCCCeeEEEE
Q 020988 243 AGAALHCWP--------SPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 243 ~~~vl~h~~--------d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+.....+.. ....+++++.++|+|+|.+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 117 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred EECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 986544332 12578999999999998765543
No 83
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.54 E-value=1.1e-14 Score=129.83 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=80.5
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccC-------------------------
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL------------------------- 217 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~------------------------- 217 (319)
...++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|+++++......
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 345778999999999988777666653 379999999999999998765421000
Q ss_pred -CCCeE-EEEcCCCCC-CC---CCCCccEEEecccccCC-CC---HHHHHHHHHHhhcCCCeeEEE
Q 020988 218 -TSNLA-LVRADVCRL-PF---ASGFVDAVHAGAALHCW-PS---PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 218 -~~~i~-~~~~d~~~l-p~---~~~~fD~V~~~~vl~h~-~d---~~~~l~el~rvlk~g~~~g~~ 273 (319)
..++. ++++|+.+. |+ ..++||+|+++.+|||+ ++ ...+++++.++|||||.+.+.
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 01233 889999873 43 25799999999999995 33 456777888887777665544
No 84
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.54 E-value=4.7e-14 Score=123.23 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=84.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++. . +++|+|+|+.+++.|+++.... ..++.++.+|+.+++++ ++||+|++.
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~-~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~-~~fD~v~~~ 103 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH-Y--EVTGVDLSEEMLEIAQEKAMET----NRHVDFWVQDMRELELP-EPVDAITIL 103 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT-S--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCGGGCCCS-SCEEEEEEC
T ss_pred CCCCeEEEecCCCCHHHHHHhhC-C--eEEEEECCHHHHHHHHHhhhhc----CCceEEEEcChhhcCCC-CCcCEEEEe
Confidence 34689999999999999999887 4 9999999999999999988764 35789999999988876 799999998
Q ss_pred c-cccCCCC---HHHHHHHHHHhhcCCCeeEEEE
Q 020988 245 A-ALHCWPS---PSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 245 ~-vl~h~~d---~~~~l~el~rvlk~g~~~g~~~ 274 (319)
. +++|+.+ +..+++++.++|+|+|...+-+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 104 CDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp TTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 6 9999954 4567888888888776554433
No 85
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.53 E-value=7.2e-14 Score=117.46 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=85.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++.+. +++|+|+|+.+++.++++. .++.++.+|+.++++++++||+|++.
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~D~i~~~ 114 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQDF--------PEARWVVGDLSVDQISETDFDLIVSA 114 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHhC--------CCCcEEEcccccCCCCCCceeEEEEC
Confidence 4688999999999999999999865 9999999999999999874 46899999999988888899999998
Q ss_pred -ccccCCCC--HHHHHHHHHHhhcCCCeeEEEE
Q 020988 245 -AALHCWPS--PSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 245 -~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~ 274 (319)
.+++|+.. ...+++++.++++|+|...+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 115 GNVMGFLAEDGREPALANIHRALGADGRAVIGF 147 (195)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 78999843 3678889999988876554433
No 86
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.53 E-value=2.1e-14 Score=123.84 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=88.7
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---C
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---P 232 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p 232 (319)
..+...+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++ .++.+..+|+.++ +
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~ 110 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAK 110 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTC
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhcccc
Confidence 3445555566779999999999999999999866 999999999999999986 3567888887766 4
Q ss_pred CC-CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 FA-SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ~~-~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+. +++||+|++.++++ ..++..+++++.++|||+|.+.+..+
T Consensus 111 ~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 111 VPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp SCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 44 44599999999999 78999999999999988776665554
No 87
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.53 E-value=6.8e-14 Score=120.77 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=88.5
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--CCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~ 242 (319)
.++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++...+ ..++.++++|+..++ +++++||.|+
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~---~~nv~~~~~d~~~l~~~~~~~~~d~v~ 113 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVY 113 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCcCCcCEEE
Confidence 45789999999999999999998777899999999999999999987652 458999999998876 6778999998
Q ss_pred ecccccCCCC--------HHHHHHHHHHhhcCCCeeEEEE
Q 020988 243 AGAALHCWPS--------PSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 243 ~~~vl~h~~d--------~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+.+...+... ...+++++.++|||+|.+.+..
T Consensus 114 ~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 114 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 8654333221 2578999999999999777654
No 88
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.53 E-value=6.4e-14 Score=124.55 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=84.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC--
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-- 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-- 233 (319)
+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.... ++..++.+++.
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~~~ 103 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITAEI 103 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTSCC
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc---------cceeeeeeccccc
Confidence 4555666777889999999999999999999876 9999999999999999987542 22333333322
Q ss_pred ---CCCCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEE
Q 020988 234 ---ASGFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 234 ---~~~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~ 274 (319)
.+++||+|++..+++|+.. ...+++++.+++ |||...+-.
T Consensus 104 ~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 104 PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 2578999999999999864 346889999999 988776544
No 89
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.52 E-value=1.2e-14 Score=130.98 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=84.4
Q ss_pred HHHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-------------CC--
Q 020988 156 KMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LT-- 218 (319)
Q Consensus 156 ~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~-- 218 (319)
+.+.+.+.. .++.+|||||||+|.+...++.. ...+|+|+|+|+.|++.|+++++..... ..
T Consensus 59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (289)
T 2g72_A 59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289)
T ss_dssp HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence 344455533 36789999999999965444332 2349999999999999999876431000 00
Q ss_pred ------------CCeEEEEcCCCC-CCC-----CCCCccEEEecccccC----CCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 219 ------------SNLALVRADVCR-LPF-----ASGFVDAVHAGAALHC----WPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 219 ------------~~i~~~~~d~~~-lp~-----~~~~fD~V~~~~vl~h----~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
..+.++.+|+.. +|+ ++++||+|+++.+++| ++++..+++++.++|||||.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 015677789987 664 3467999999999999 667889999999999998876654
No 90
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.52 E-value=3.7e-14 Score=123.00 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=86.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C--CCCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V 241 (319)
.++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++++... ...++.++++|+.++ + +++++||.|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~---~l~nv~~~~~Da~~~l~~~~~~~~~d~v 109 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE---GLSNLRVMCHDAVEVLHKMIPDNSLRMV 109 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT---TCSSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHcCCCChheE
Confidence 3678999999999999999999988788999999999999999998765 246899999998874 3 678999999
Q ss_pred EecccccCCCCH--------HHHHHHHHHhhcCCCeeEEEE
Q 020988 242 HAGAALHCWPSP--------SNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 242 ~~~~vl~h~~d~--------~~~l~el~rvlk~g~~~g~~~ 274 (319)
++.+...+.... ..+++++.++|||||.+.+..
T Consensus 110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 997544332221 248999999999987765543
No 91
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.52 E-value=2.4e-14 Score=123.46 Aligned_cols=111 Identities=21% Similarity=0.182 Sum_probs=85.5
Q ss_pred HhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCCCCCCCCcc
Q 020988 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPFASGFVD 239 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~~~~~fD 239 (319)
.+...++.+|||||||+|.++..+++.++..+|+|+|+|+.|++.+.++..+. ......++.++++|+.++|+.+++ |
T Consensus 22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d 100 (218)
T 3mq2_A 22 QLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-G 100 (218)
T ss_dssp HHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-E
T ss_pred HhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-C
Confidence 44456788999999999999999999977779999999999888644333211 011245899999999999987666 7
Q ss_pred EEEe---cccc--cCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 240 AVHA---GAAL--HCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 240 ~V~~---~~vl--~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
.|.. +..+ +|++++..+++++.++|||+|.+.+
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 138 (218)
T 3mq2_A 101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLV 138 (218)
T ss_dssp EEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred EEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence 6663 3334 3888889999999999998876554
No 92
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.51 E-value=1.2e-13 Score=127.67 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=92.6
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..+ ...+++++.+|+.++++++
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~ 129 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKIEEVHLPV 129 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSC
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcC--CCCcEEEEEeeHHHhcCCC
Confidence 344455556778999999999999999999885 35899999997 9999999887653 2368999999999998888
Q ss_pred CCccEEEecc---cccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 236 GFVDAVHAGA---ALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 236 ~~fD~V~~~~---vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
++||+|++.. .+.|..++..+++++.++|||+|...
T Consensus 130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 8999999866 57777777889999999999887553
No 93
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.51 E-value=8.2e-14 Score=122.28 Aligned_cols=101 Identities=14% Similarity=-0.002 Sum_probs=85.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---CCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V 241 (319)
.++.+|||||||+|.++..++...+..+|+|+|+|+.+++.|+++....+ ..+++++++|+.++++. +++||+|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEeccHHHhcccccccCCccEE
Confidence 46789999999999999999876666799999999999999999887653 34799999999887753 5799999
Q ss_pred EecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 242 HAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
++.. +.++..+++++.++|+|+|.+.+
T Consensus 146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 146 TARA----VARLSVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp EEEC----CSCHHHHHHHHGGGEEEEEEEEE
T ss_pred EEec----cCCHHHHHHHHHHhcCCCCEEEE
Confidence 9976 46788999999999888876644
No 94
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.51 E-value=2.2e-13 Score=126.98 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=91.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 242 (319)
....+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+ ...+++++.+|+.+. |++ ++||+|+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~p-~~~D~v~ 253 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS--GSERIHGHGANLLDRDVPFP-TGFDAVW 253 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT--TGGGEEEEECCCCSSSCCCC-CCCSEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC--cccceEEEEccccccCCCCC-CCcCEEE
Confidence 4678999999999999999999988889999999 999999999886542 225799999999885 565 7899999
Q ss_pred ecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
+..++||++++. ..+++++++|||+|...+...
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 999999998764 679999999999987665543
No 95
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.51 E-value=1.8e-13 Score=124.78 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=84.8
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc----cCCCCeEEEEcCCCCCC----CC--C
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCRLP----FA--S 235 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~i~~~~~d~~~lp----~~--~ 235 (319)
++.+|||||||+|.++..+++. +..+++|+|+|+.+++.|+++....+. ....++.++++|+..++ ++ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 6789999999999999998875 346999999999999999998764210 01247899999999876 53 4
Q ss_pred CCccEEEecccccCC-CC---HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCW-PS---PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~-~d---~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++..++||+ .+ +..+++++.++|||+|.+.+..+
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 599999999999988 44 45778888888877765554444
No 96
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.50 E-value=3.5e-13 Score=118.61 Aligned_cols=101 Identities=22% Similarity=0.315 Sum_probs=83.0
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++.... ..++.++++|+.+++++ ++||+|++
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-~~fD~v~~ 111 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-NEFDAVTM 111 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-SCEEEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEECChhhcccC-CCccEEEE
Confidence 35678999999999999999999866 9999999999999999988764 24789999999988865 68999998
Q ss_pred cc-cccCCC--CHHHHHHHHHHhhcCCCeeE
Q 020988 244 GA-ALHCWP--SPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 244 ~~-vl~h~~--d~~~~l~el~rvlk~g~~~g 271 (319)
.. +++|+. +...+++++.++|+|+|.+.
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li 142 (252)
T 1wzn_A 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (252)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCchhcCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 74 555553 34577888888888876543
No 97
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.50 E-value=2.4e-13 Score=126.35 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=96.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+ ...+++++.+|+.+.++++
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~ 256 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYPE 256 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CTTTEEEEECCTTTSCCCC
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC--CCCCEEEEeCccccCCCCC
Confidence 3444555556788999999999999999999988789999999 999999999887642 2346999999999887764
Q ss_pred CCccEEEecccccCCCC--HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+|+|++..++||+++ ...+++++.+++||+|...+..+
T Consensus 257 --~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 257 --ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp --CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred --CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 399999999999988 67889999999999987766554
No 98
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.50 E-value=2.2e-14 Score=126.93 Aligned_cols=109 Identities=15% Similarity=0.246 Sum_probs=86.1
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--------------C------------C
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------------L------------T 218 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------------~------------~ 218 (319)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.+++++...+.. . .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 5678999999999999998888764 58999999999999999987542100 0 0
Q ss_pred CCe-EEEEcCCCCCC-CCC---CCccEEEeccccc----CCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 219 SNL-ALVRADVCRLP-FAS---GFVDAVHAGAALH----CWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 219 ~~i-~~~~~d~~~lp-~~~---~~fD~V~~~~vl~----h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
.++ .++++|+.+.+ +.+ ++||+|++..+++ |++++..+++++.++|||||.+.+..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 027 89999998864 355 7999999999999 66677888999999988877665544
No 99
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.50 E-value=3.5e-13 Score=125.87 Aligned_cols=113 Identities=11% Similarity=0.102 Sum_probs=94.9
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (319)
+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+ ...+++++.+|+. .+++. .
T Consensus 194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--l~~~v~~~~~d~~-~~~p~-~ 268 (369)
T 3gwz_A 194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG--LADRCEILPGDFF-ETIPD-G 268 (369)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-TCCCS-S
T ss_pred HHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC--cCCceEEeccCCC-CCCCC-C
Confidence 33444445678999999999999999999988889999999 999999999887642 2468999999998 45555 8
Q ss_pred ccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 238 VDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
||+|++.+++||++++. +.+++++++|+|+|...+..+
T Consensus 269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999999999998876 689999999999987766554
No 100
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.50 E-value=1.7e-13 Score=118.13 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=80.2
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----CCCCCCc
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFV 238 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~f 238 (319)
...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+..+.. .++.++.+|+... ++. ++|
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~-~~f 127 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIV-EKV 127 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTC-CCE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccc-cce
Confidence 345788999999999999999998764559999999999887766655442 4788999998773 444 799
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
|+|++. +.++ .+...+++++.++|||||.+.+.+
T Consensus 128 D~V~~~-~~~~-~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 128 DLIYQD-IAQK-NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEEEEC-CCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEe-ccCh-hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999987 2222 233345899999999988777664
No 101
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.50 E-value=1.6e-13 Score=127.38 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=87.5
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
...++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|+++++..+ ...+++++.+|+.++++++++||+|+
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s-~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~Ii 138 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECS-SISDYAVKIVKANK--LDHVVTIIKGKVEEVELPVEKVDIII 138 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECS-THHHHHHHHHHHTT--CTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred ccCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcH-HHHHHHHHHHHHcC--CCCcEEEEECcHHHccCCCCceEEEE
Confidence 34578999999999999999999984 4699999999 49999999987753 23459999999999998889999999
Q ss_pred eccc---ccCCCCHHHHHHHHHHhhcCCCee
Q 020988 243 AGAA---LHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 243 ~~~v---l~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
+..+ +.+..++..+++++.++|||+|..
T Consensus 139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~l 169 (349)
T 3q7e_A 139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLI 169 (349)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred EccccccccCchhHHHHHHHHHHhCCCCCEE
Confidence 9654 555578889999999999887654
No 102
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=120.99 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=82.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc---CccCCCCeEEEEcCCCC-CC--CCCCCc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---NTILTSNLALVRADVCR-LP--FASGFV 238 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~i~~~~~d~~~-lp--~~~~~f 238 (319)
.++.+|||||||+|.++..+++..+...|+|+|+|+.+++.|++++... ......++.++++|+.. ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999887789999999999999999876531 00124689999999987 66 778999
Q ss_pred cEEEecccccCCCC--------HHHHHHHHHHhhcCCCeeEEE
Q 020988 239 DAVHAGAALHCWPS--------PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 239 D~V~~~~vl~h~~d--------~~~~l~el~rvlk~g~~~g~~ 273 (319)
|.|++...-.|... ...+++++.++|||||.+.+.
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 99987543322211 136889999999888766544
No 103
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.49 E-value=1.6e-13 Score=126.18 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=91.1
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.+..+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+ ...+++++.+|+. .+++. +||+|++.
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~-~~~p~-~~D~v~~~ 242 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG--LSGRAQVVVGSFF-DPLPA-GAGGYVLS 242 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-SCCCC-SCSEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC--cCcCeEEecCCCC-CCCCC-CCcEEEEe
Confidence 3468999999999999999999988889999999 999999999887642 2368999999997 45554 89999999
Q ss_pred ccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||++++ .+.+++++++|+|||...+..+
T Consensus 243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 999999986 6889999999999987766544
No 104
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.49 E-value=3.3e-13 Score=112.33 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=90.0
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+...++.+|||+|||+|.++..+++ +..+++|+|+|+.+++.+++++...+ ..+++++.+|+.+ ++
T Consensus 23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~ 96 (183)
T 2yxd_A 23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN---IKNCQIIKGRAED-VL 96 (183)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT---CCSEEEEESCHHH-HG
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC---CCcEEEEECCccc-cc
Confidence 345666667667889999999999999999988 44599999999999999999987753 3579999999887 66
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++++||+|++..+ .+....++++.++ ++|...+...
T Consensus 97 ~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 97 DKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp GGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred cCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEec
Confidence 6689999999988 5778889999888 6665554443
No 105
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.49 E-value=2.2e-13 Score=127.16 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=92.7
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+ ...+++++.+|+.+ +++.
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~- 247 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFK-PLPV- 247 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCSC-
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCC-cCCC-
Confidence 344444455788999999999999999999987789999999 999999999887642 23489999999976 4443
Q ss_pred CccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 237 FVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
.||+|++.+++||++++. .+++++.++|+|+|...+..+
T Consensus 248 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 248 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 499999999999998875 889999999998776555433
No 106
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.49 E-value=2.1e-13 Score=125.16 Aligned_cols=115 Identities=12% Similarity=0.228 Sum_probs=93.0
Q ss_pred HHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 157 MAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 157 ~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.. .++.+|||||||+|.++..+++..+..+++++|++ .+++.|++++...+ ...+++++.+|+.+.+++
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG--VASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT--CGGGEEEEESCTTTSCCC
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC--CCcceEEEecccccCCCC
Confidence 44444554 67789999999999999999999777799999999 99999999886642 224699999999887776
Q ss_pred CCCccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+ .||+|++.++++|++++ ...++++.++++|+|...+..+
T Consensus 231 ~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 231 N-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp S-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred C-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 4 49999999999999665 5888999999888765554433
No 107
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.49 E-value=2e-13 Score=127.74 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=95.3
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
...+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+++++..++.....+++++.+|+.+ +
T Consensus 209 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~ 287 (375)
T 4dcm_A 209 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-G 287 (375)
T ss_dssp HHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-T
T ss_pred HHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-c
Confidence 344567777777777999999999999999999998778999999999999999999877532222368899999987 5
Q ss_pred CCCCCccEEEecccccCCCC-----HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 FASGFVDAVHAGAALHCWPS-----PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d-----~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++++||+|+++..+++... ...+++++.++|||+|...++..
T Consensus 288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 56789999999988876322 13578899999988877766554
No 108
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.49 E-value=3.6e-13 Score=118.83 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=96.0
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL 231 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~l 231 (319)
....+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|+++++.. + ..++.+..+|+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~ 160 (258)
T 2pwy_A 84 DASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLEEA 160 (258)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGGGC
T ss_pred HHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchhhc
Confidence 3455666677778899999999999999999998 66679999999999999999988664 3 35899999999988
Q ss_pred CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++++++||+|++ +.+++..+++++.++|+|+|...+...
T Consensus 161 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 161 ELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 777789999997 567888899999999998877666555
No 109
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.49 E-value=3.4e-14 Score=140.09 Aligned_cols=106 Identities=15% Similarity=0.282 Sum_probs=87.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~ 242 (319)
..+.+|||||||.|.++..+++.|. +|+|||+|+.+++.|+.+..+.+ ..+++|.+++++++ ++.+++||+|+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~v~ 139 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENP---DFAAEFRVGRIEEVIAALEEGEFDLAI 139 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTST---TSEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcC---CCceEEEECCHHHHhhhccCCCccEEE
Confidence 3568999999999999999999987 99999999999999999887642 34799999999887 45678999999
Q ss_pred ecccccCCCCHHHH--HHHHHHhhcCCCeeEEEEe
Q 020988 243 AGAALHCWPSPSNA--ASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~vl~h~~d~~~~--l~el~rvlk~g~~~g~~~~ 275 (319)
+..+|||++|+... +..+.+.+++.+..+++.+
T Consensus 140 ~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 140 GLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp EESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred ECcchhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence 99999999988632 3456666777766666655
No 110
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.49 E-value=1.8e-13 Score=119.28 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=84.6
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----CCCCCCCc
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFV 238 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~f 238 (319)
...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++.+. ..++.++.+|+.. +++. ++|
T Consensus 71 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~-~~~ 144 (230)
T 1fbn_A 71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGDANKPQEYANIV-EKV 144 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTS-CCE
T ss_pred CCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----CCCeEEEECCCCCcccccccC-ccE
Confidence 34578899999999999999999885456999999999999999998754 2689999999988 7766 789
Q ss_pred cEEEecccccCCCCH---HHHHHHHHHhhcCCCeeEEE
Q 020988 239 DAVHAGAALHCWPSP---SNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 239 D~V~~~~vl~h~~d~---~~~l~el~rvlk~g~~~g~~ 273 (319)
|+|+ ++++++ ..+++++.++|||+|.+.+.
T Consensus 145 D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 145 DVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 9998 566777 67799999999998877665
No 111
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.49 E-value=1e-13 Score=117.54 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=87.8
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccE
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA 240 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~ 240 (319)
...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.|++++...+ ...+++++++|+.+++ +.+++||+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--CGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHhhhccCCceE
Confidence 3467889999999999999999887 345699999999999999999987742 1258999999998875 55689999
Q ss_pred EEeccccc---------CCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 241 VHAGAALH---------CWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 241 V~~~~vl~---------h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
|++...+. +..+...+++++.++|||+|...+..+
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 99886551 111335788899999988877766655
No 112
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.49 E-value=2.6e-13 Score=112.92 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhhc--cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988 152 DEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (319)
Q Consensus 152 ~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (319)
....+.+.+.+.. .++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++. . .++.++++|+.
T Consensus 7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~------~------~~~~~~~~d~~ 71 (170)
T 3q87_B 7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES------H------RGGNLVRADLL 71 (170)
T ss_dssp CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT------C------SSSCEEECSTT
T ss_pred CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc------c------cCCeEEECChh
Confidence 3344455555554 678899999999999999999876 99999999999987 1 37889999998
Q ss_pred CCCCCCCCccEEEecccccCCCCH---------HHHHHHHHHhhcCCCeeEEEEe
Q 020988 230 RLPFASGFVDAVHAGAALHCWPSP---------SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 230 ~lp~~~~~fD~V~~~~vl~h~~d~---------~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+ ++.+++||+|+++..+++.++. ...++++.+.+ |+|...+...
T Consensus 72 ~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 72 C-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp T-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred h-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 7 6666899999999988877655 56778888887 7776665554
No 113
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.49 E-value=2.9e-13 Score=119.50 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
.....+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++..+ ...+++++.+|+.+.
T Consensus 80 ~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~ 157 (255)
T 3mb5_A 80 KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG--FDDRVTIKLKDIYEG 157 (255)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT--CTTTEEEECSCGGGC
T ss_pred hHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC--CCCceEEEECchhhc
Confidence 34456667777788999999999999999999998 667799999999999999999987653 233499999999854
Q ss_pred CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++++||+|++ +.+++..+++++.++|+|+|...+...
T Consensus 158 -~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 158 -IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp -CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred -cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEEC
Confidence 66788999987 577888899999999999877766554
No 114
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.49 E-value=2.1e-13 Score=124.84 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=90.2
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
...+.+.+...++.+|||||||+|.++..+++.+. ..+|+|+|+|+.+++.|+++++..+ ..+++++.+|+.+.+.
T Consensus 64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g---~~~v~~~~~d~~~~~~ 140 (317)
T 1dl5_A 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYGVP 140 (317)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCG
T ss_pred HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCeEEEECChhhccc
Confidence 35566667777899999999999999999998876 3569999999999999999987652 3569999999988655
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
.+++||+|++..+++|++ +++.++|||+|...+.
T Consensus 141 ~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 141 EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 174 (317)
T ss_dssp GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEE
T ss_pred cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEE
Confidence 567999999999999996 4677888877655443
No 115
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.48 E-value=1e-13 Score=129.56 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=91.8
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh-------cCccCCCCeEEEEcC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTILTSNLALVRAD 227 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~i~~~~~d 227 (319)
+..+.+.+...++.+|||||||+|.++..++...+..+|+|||+|+.+++.|+++.+. .+. ...++.++++|
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl-~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB-CCCEEEEEECC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEEEECc
Confidence 4556666677889999999999999999998765445699999999999999875421 110 12589999999
Q ss_pred CCCCCCCC--CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 228 VCRLPFAS--GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 228 ~~~lp~~~--~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+.++|+.+ ..||+|+++..+ +.++....++++.++|||||.+-..
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred ccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEe
Confidence 99988754 479999998776 4567888899999999988766433
No 116
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.48 E-value=2.5e-13 Score=118.46 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=89.3
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC---CCCCCCC
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGF 237 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~ 237 (319)
+...||.+|||+|||+|.++..+++. |+..+|+|+|+++.|++.++++.++ ..|+..+.+|... .++..++
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-----~~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----RRNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-----CTTEEEEESCTTCGGGGTTTCCC
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-----hcCeeEEEEeccCccccccccce
Confidence 45679999999999999999999987 7878999999999999999998765 3689999988865 3456789
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 238 VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+|+|++ .+.|..++..+++++.++|||||.+.+.+
T Consensus 148 vDvVf~--d~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 148 VDGLYA--DVAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEEE--CCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEE--eccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 999986 35566678889999999999999876654
No 117
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.48 E-value=4.3e-13 Score=114.69 Aligned_cols=116 Identities=10% Similarity=0.100 Sum_probs=86.8
Q ss_pred HHHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC
Q 020988 156 KMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF 233 (319)
Q Consensus 156 ~~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~ 233 (319)
+.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|+++++..+ ..+++++++|+.+ ++.
T Consensus 43 ~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~D~~~~~~~ 118 (202)
T 2fpo_A 43 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSNAMSFLAQ 118 (202)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCHHHHHSS
T ss_pred HHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHhh
Confidence 344444443 2678999999999999998777753 489999999999999999987753 2589999999877 465
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeec
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRY 277 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~ 277 (319)
.+++||+|++...+ |..+....++++.+. +.++++|.+++..
T Consensus 119 ~~~~fD~V~~~~p~-~~~~~~~~l~~l~~~-~~L~pgG~l~i~~ 160 (202)
T 2fpo_A 119 KGTPHNIVFVDPPF-RRGLLEETINLLEDN-GWLADEALIYVES 160 (202)
T ss_dssp CCCCEEEEEECCSS-STTTHHHHHHHHHHT-TCEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCC-CCCcHHHHHHHHHhc-CccCCCcEEEEEE
Confidence 56799999998774 456777788888762 2344455555543
No 118
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.48 E-value=3.7e-13 Score=116.95 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=87.3
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
...+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++.... .++.++.+|+.+....
T Consensus 59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~ 131 (231)
T 1vbf_A 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYEE 131 (231)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCGG
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhc-----CCeEEEECCccccccc
Confidence 45566666777889999999999999999999874 9999999999999999998653 2899999999873334
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+++||+|++..+++|+.+ ++.++|+|+|...+..
T Consensus 132 ~~~fD~v~~~~~~~~~~~------~~~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI 165 (231)
T ss_dssp GCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred CCCccEEEECCcHHHHHH------HHHHHcCCCcEEEEEE
Confidence 678999999999999863 5777877776555443
No 119
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.48 E-value=1.2e-13 Score=119.97 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=79.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC-CCCCCC-CCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~-~~~fD~V~ 242 (319)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++. .+++++++|+ ..+|+. +++||+|+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~~~fD~v~ 116 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARANA--------PHADVYEWNGKGELPAGLGAPFGLIV 116 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHC--------TTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhC--------CCceEEEcchhhccCCcCCCCEEEEE
Confidence 5688999999999999999999865 9999999999999999872 4789999999 668887 89999999
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
+. .++..+++++.++|||+|.+.
T Consensus 117 ~~------~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 117 SR------RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp EE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred eC------CCHHHHHHHHHHHcCCCcEEE
Confidence 87 467788999999999887655
No 120
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.48 E-value=1.3e-14 Score=127.14 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=86.2
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...+ ...++.++++|+.+++ .+++||+|++
T Consensus 76 ~~~~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~D~v~~ 150 (241)
T 3gdh_A 76 SFKCDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVYG--IADKIEFICGDFLLLA-SFLKADVVFL 150 (241)
T ss_dssp HSCCSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred ccCCCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC--CCcCeEEEECChHHhc-ccCCCCEEEE
Confidence 34789999999999999999999874 99999999999999999987652 1147999999998876 5679999999
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
..+++|..++...+.++.++|+|+|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~L~pgG~ 176 (241)
T 3gdh_A 151 SPPWGGPDYATAETFDIRTMMSPDGF 176 (241)
T ss_dssp CCCCSSGGGGGSSSBCTTTSCSSCHH
T ss_pred CCCcCCcchhhhHHHHHHhhcCCcce
Confidence 99999988777667778888888765
No 121
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.48 E-value=3.6e-13 Score=115.72 Aligned_cols=111 Identities=13% Similarity=0.024 Sum_probs=87.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
...+.+.+...++.+|||||||+|.++..+++.+ +..+|+++|+|+.+++.+++++...+ ..++.++.+|+.....
T Consensus 66 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~ 142 (215)
T 2yxe_A 66 VGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---YDNVIVIVGDGTLGYE 142 (215)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEESCGGGCCG
T ss_pred HHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCC
Confidence 3455566667788999999999999999999885 44699999999999999999887642 3579999999854322
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
.+++||+|++..+++|++ +++.++|||+|...+.+
T Consensus 143 ~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPV 177 (215)
T ss_dssp GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred CCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEE
Confidence 357899999999999986 36778887766554443
No 122
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.47 E-value=2.8e-13 Score=127.04 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=89.5
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++... ..+++++.+|+.+.+..+++||+|+++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~----~~~v~~~~~D~~~~~~~~~~fD~Ii~n 305 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEAN----ALKAQALHSDVDEALTEEARFDIIVTN 305 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc----CCCeEEEEcchhhccccCCCeEEEEEC
Confidence 3678999999999999999999865 9999999999999999998775 235899999999987767899999999
Q ss_pred ccccC-----CCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHC-----WPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h-----~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..+++ ..+...+++++.++|||+|.+.+...
T Consensus 306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 99988 44566888999999988876665543
No 123
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.47 E-value=2.7e-13 Score=115.85 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=83.1
Q ss_pred HHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCC--CCeEEEEcCCCCCCC
Q 020988 157 MAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT--SNLALVRADVCRLPF 233 (319)
Q Consensus 157 ~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~--~~i~~~~~d~~~lp~ 233 (319)
.+.+.+.. .++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|+++++..+ . .+++++.+|+.++..
T Consensus 43 ~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~v~~~~~d~~~~~~ 118 (201)
T 2ift_A 43 TLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLK---CSSEQAEVINQSSLDFLK 118 (201)
T ss_dssp HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCTTTEEEECSCHHHHTT
T ss_pred HHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhC---CCccceEEEECCHHHHHH
Confidence 33344433 2678999999999999998777653 589999999999999999987652 2 589999999876432
Q ss_pred --CCCC-ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 234 --ASGF-VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 234 --~~~~-fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
.+++ ||+|++...++ ..+....++++.+ .+.++++|.+++.
T Consensus 119 ~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~-~~~LkpgG~l~i~ 162 (201)
T 2ift_A 119 QPQNQPHFDVVFLDPPFH-FNLAEQAISLLCE-NNWLKPNALIYVE 162 (201)
T ss_dssp SCCSSCCEEEEEECCCSS-SCHHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred hhccCCCCCEEEECCCCC-CccHHHHHHHHHh-cCccCCCcEEEEE
Confidence 3578 99999987754 5566777777743 2234444555553
No 124
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.47 E-value=2.1e-13 Score=121.10 Aligned_cols=115 Identities=10% Similarity=0.217 Sum_probs=89.3
Q ss_pred HHHHHhhcc-CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--C
Q 020988 157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F 233 (319)
Q Consensus 157 ~l~~~l~~~-~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~ 233 (319)
.+..++... ++.+|||+|||+|.++..+++.++ .+|+|+|+++.+++.|++++...+ ...++.++.+|+.+++ +
T Consensus 39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~--~~~~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQ--LEDQIEIIEYDLKKITDLI 115 (259)
T ss_dssp HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTT--CTTTEEEECSCGGGGGGTS
T ss_pred HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCC--CcccEEEEECcHHHhhhhh
Confidence 444555556 789999999999999999998865 399999999999999999987653 2347999999998875 4
Q ss_pred CCCCccEEEecccccCC-----C---------------CHHHHHHHHHHhhcCCCeeEEEE
Q 020988 234 ASGFVDAVHAGAALHCW-----P---------------SPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~-----~---------------d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
++++||+|+++..+.+. . +...+++++.++|||+|.+.++.
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 57899999997544322 1 23467888999999888777644
No 125
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.46 E-value=3e-13 Score=121.15 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=89.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++... + ..++.++.+|+.+ ++
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~-~~ 175 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIAD-FI 175 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTT-CC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhc-cC
Confidence 34555666778899999999999999999987 55569999999999999999998653 2 3579999999987 66
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++++||+|++ |++++..+++++.++|||+|...+...
T Consensus 176 ~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 176 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred cCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 6789999998 678888999999999988776655544
No 126
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.46 E-value=5e-13 Score=114.06 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA 245 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~ 245 (319)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...+ ..++.++.+|+.+++ ++++||+|++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~-~~~~~D~i~~~~ 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFP-SEPPFDGVISRA 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEecchhhCC-ccCCcCEEEEec
Confidence 4789999999999999999988666799999999999999999887652 345999999998876 457899999754
Q ss_pred cccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 246 ALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 246 vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
+.+...+++++.++++|+|...+
T Consensus 141 ----~~~~~~~l~~~~~~L~~gG~l~~ 163 (207)
T 1jsx_A 141 ----FASLNDMVSWCHHLPGEQGRFYA 163 (207)
T ss_dssp ----SSSHHHHHHHHTTSEEEEEEEEE
T ss_pred ----cCCHHHHHHHHHHhcCCCcEEEE
Confidence 35677888888888777654443
No 127
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.46 E-value=6.5e-13 Score=122.15 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=89.3
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|+++++..+ ...+++++.+|+.+++++++
T Consensus 29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~ 104 (328)
T 1g6q_1 29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNG--FSDKITLLRGKLEDVHLPFP 104 (328)
T ss_dssp HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSSS
T ss_pred HHHhhHhhcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcC--CCCCEEEEECchhhccCCCC
Confidence 33334445678899999999999999999875 3589999999 59999999887653 23579999999999988778
Q ss_pred CccEEEecc---cccCCCCHHHHHHHHHHhhcCCCee
Q 020988 237 FVDAVHAGA---ALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 237 ~fD~V~~~~---vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
+||+|++.. .+.+..++..++.++.++|||+|..
T Consensus 105 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 141 (328)
T 1g6q_1 105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI 141 (328)
T ss_dssp CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEE
T ss_pred cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEE
Confidence 999999874 5556667888899999999887654
No 128
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.46 E-value=3.4e-13 Score=124.84 Aligned_cols=114 Identities=11% Similarity=0.138 Sum_probs=92.2
Q ss_pred HHHhhccC-CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCC
Q 020988 159 QEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASG 236 (319)
Q Consensus 159 ~~~l~~~~-~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~ 236 (319)
.+.+...+ +.+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...+ ...+++++.+|+.+.+ +..+
T Consensus 171 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 171 VSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD--LGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CGGGEEEEECCTTCGGGGTTC
T ss_pred HHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC--CCCceEEEeCCcccCcccCCC
Confidence 33344445 78999999999999999999988889999999 889999999887642 2347999999998876 1346
Q ss_pred CccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 237 FVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.||+|++.+++||++++ ...+++++++|+|+|...+..+
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 79999999999999876 6888999999888765555443
No 129
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.46 E-value=1.2e-12 Score=113.68 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=83.5
Q ss_pred ccCCCeEEEEcCC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCccEE
Q 020988 164 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAV 241 (319)
Q Consensus 164 ~~~~~~VLDiGcG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V 241 (319)
..++.+|||+||| +|.++..+++.. ..+|+|+|+|+.+++.|++++...+ .+++++++|+..+ ++.+++||+|
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~fD~I 127 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN----SNVRLVKSNGGIIKGVVEGTFDVI 127 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT----CCCEEEECSSCSSTTTCCSCEEEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEeCCchhhhhcccCceeEE
Confidence 4578999999999 999999999883 3499999999999999999987752 2799999997543 4556899999
Q ss_pred EecccccCCCC-------------------HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 242 HAGAALHCWPS-------------------PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 242 ~~~~vl~h~~d-------------------~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++..+.+..+ ...+++++.++|||+|.+.+.+.
T Consensus 128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (230)
T 3evz_A 128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP 180 (230)
T ss_dssp EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 99877665443 36678888888888776665544
No 130
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.46 E-value=4.3e-13 Score=123.32 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=93.2
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
..+.+.+...+ .+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...+ ...+++++.+|+.+ +++
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL--AGERVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH--HTTSEEEEESCTTT-CCC-
T ss_pred HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC--CCCcEEEecCCCCC-CCC-
Confidence 33444444344 8999999999999999999987779999999 999999999876532 23579999999987 555
Q ss_pred CCccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 236 GFVDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|++.+++||++++. ..++++.++++|+|...+..+
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6899999999999998776 889999999999987666544
No 131
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.45 E-value=2.9e-13 Score=119.68 Aligned_cols=101 Identities=9% Similarity=-0.052 Sum_probs=84.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---CCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V 241 (319)
.++.+|||||||+|..+..++...+..+|+++|+|+.+++.|+++....+ ..+++++.+|+++++.. +++||+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---l~~v~~~~~d~~~~~~~~~~~~~fD~I 155 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG---LKGARALWGRAEVLAREAGHREAYARA 155 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCceEEEECcHHHhhcccccCCCceEE
Confidence 46789999999999999999988777899999999999999999987753 34799999999887643 4799999
Q ss_pred EecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 242 HAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 242 ~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
++.. +.+...+++++.++|||+|.+..
T Consensus 156 ~s~a----~~~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 156 VARA----VAPLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp EEES----SCCHHHHHHHHGGGEEEEEEEEE
T ss_pred EECC----cCCHHHHHHHHHHHcCCCeEEEE
Confidence 9964 45678888899999888765443
No 132
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.44 E-value=6.7e-13 Score=123.27 Aligned_cols=111 Identities=15% Similarity=0.277 Sum_probs=89.9
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (319)
+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++++...+ ...+++++.+|+.+ +++. .
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~-~ 249 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFE-PLPR-K 249 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCSS-C
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCC-CCCC-C
Confidence 34444556778999999999999999999988789999999 999999999887642 23489999999876 3443 4
Q ss_pred ccEEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEE
Q 020988 238 VDAVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~ 273 (319)
||+|++.+++||++++. ..++++.++|+|+|...+.
T Consensus 250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 287 (360)
T 1tw3_A 250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIH 287 (360)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999998774 7889999988877655444
No 133
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.44 E-value=5.8e-13 Score=111.58 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
.....+...+...++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++...+ ...++.++.+|+.+ +
T Consensus 20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~-~ 94 (192)
T 1l3i_A 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPE-A 94 (192)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHH-H
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecCHHH-h
Confidence 334556666677788999999999999999999887 599999999999999999887642 12589999999876 2
Q ss_pred CCC-CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 FAS-GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ~~~-~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++ ++||+|++..+++| ....++++.++++|+|...+...
T Consensus 95 ~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 95 LCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp HTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEec
Confidence 232 58999999888764 57889999999888776655544
No 134
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.44 E-value=6.8e-14 Score=117.46 Aligned_cols=112 Identities=11% Similarity=-0.008 Sum_probs=83.6
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
.+..+..++ .++++|||+|||+|.++..++...+..+|+++|+|+.|++.+++++...+ ...++.+ .|.... .
T Consensus 39 fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g--~~~~v~~--~d~~~~-~ 111 (200)
T 3fzg_A 39 FYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK--TTIKYRF--LNKESD-V 111 (200)
T ss_dssp HHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC--CSSEEEE--ECCHHH-H
T ss_pred HHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCccEEE--eccccc-C
Confidence 345555555 45789999999999999999888788899999999999999999987752 1124555 666544 3
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+.++||+|++..++||+.+....+..+.+.|+| +|+++-
T Consensus 112 ~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~p---ggvfIS 150 (200)
T 3fzg_A 112 YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHT---QNFVIS 150 (200)
T ss_dssp TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEE---EEEEEE
T ss_pred CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCC---CCEEEE
Confidence 458899999999999995555555555555554 455544
No 135
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.44 E-value=4.1e-13 Score=120.26 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=84.8
Q ss_pred CCCCcHHHHHHHHHHh-hccCCCeEEEEcCCcCh----HHHHHHhh-CC---CCeEEEEeCCHHHHHHHHHHHhhc----
Q 020988 147 GFPGPDEEFKMAQEYF-KSAQGGLLVDVSCGSGL----FSRKFAKS-GT---YSGVVALDFSENMLRQCYDFIKQD---- 213 (319)
Q Consensus 147 ~~~~~~~~~~~l~~~l-~~~~~~~VLDiGcG~G~----~~~~l~~~-g~---~~~v~gvD~s~~~l~~a~~~~~~~---- 213 (319)
.|+.....++.+.+.+ +..++.+|||+|||||. ++..+++. +. ..+|+|+|+|+.|++.|++..-..
T Consensus 85 ~FfRd~~~f~~l~~~llp~~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~ 164 (274)
T 1af7_A 85 AFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELK 164 (274)
T ss_dssp CTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGT
T ss_pred cccCChHHHHHHHHHccCCCCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhh
Confidence 3444333445555433 32245799999999998 55556655 21 248999999999999999864100
Q ss_pred ------------------C--c----cCCCCeEEEEcCCCCCCCC-CCCccEEEecccccCCCCH--HHHHHHHHHhhcC
Q 020988 214 ------------------N--T----ILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPSP--SNAASVFSSSYSL 266 (319)
Q Consensus 214 ------------------~--~----~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~ 266 (319)
+ . ....++.|.++|+.+.|++ .++||+|+|.+++.|+.++ .+++++++++|+|
T Consensus 165 ~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p 244 (274)
T 1af7_A 165 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP 244 (274)
T ss_dssp TSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE
T ss_pred cCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC
Confidence 0 0 0013699999999887665 5789999999999999654 4556666666555
Q ss_pred CCeeEEEEe
Q 020988 267 LSICYLLQF 275 (319)
Q Consensus 267 g~~~g~~~~ 275 (319)
| |.+++
T Consensus 245 g---G~L~l 250 (274)
T 1af7_A 245 D---GLLFA 250 (274)
T ss_dssp E---EEEEE
T ss_pred C---cEEEE
Confidence 4 55555
No 136
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.43 E-value=3.3e-13 Score=116.87 Aligned_cols=114 Identities=6% Similarity=0.074 Sum_probs=86.4
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L 231 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l 231 (319)
..+.+...+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+ ...+++++.+|+.+ +
T Consensus 46 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l 123 (221)
T 3u81_A 46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG--LQDKVTILNGASQDLI 123 (221)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHG
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC--CCCceEEEECCHHHHH
Confidence 34555555666678999999999999999999863 35699999999999999999987653 23469999999855 3
Q ss_pred CCCC-----CCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 232 PFAS-----GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 232 p~~~-----~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
+... ++||+|++....++..+....++.+ ++|||||.+
T Consensus 124 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~l 166 (221)
T 3u81_A 124 PQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVL 166 (221)
T ss_dssp GGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEE
T ss_pred HHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEE
Confidence 3222 6899999988887775555556655 777776643
No 137
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.43 E-value=6.2e-13 Score=124.57 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=85.8
Q ss_pred HhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccE
Q 020988 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (319)
.....++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|+++++..+ ...+++++.+|+.+++++ ++||+
T Consensus 58 ~~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~~D~ 132 (376)
T 3r0q_C 58 NKHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANN--LDHIVEVIEGSVEDISLP-EKVDV 132 (376)
T ss_dssp TTTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTT--CTTTEEEEESCGGGCCCS-SCEEE
T ss_pred ccccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcC--CCCeEEEEECchhhcCcC-CcceE
Confidence 34456789999999999999999999863 599999999 99999999987753 235699999999998876 89999
Q ss_pred EEecccccCC---CCHHHHHHHHHHhhcCCCee
Q 020988 241 VHAGAALHCW---PSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 241 V~~~~vl~h~---~d~~~~l~el~rvlk~g~~~ 270 (319)
|++..+.+++ .++..+++++.++|||+|.+
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~l 165 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVM 165 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEE
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCCCCeEE
Confidence 9995544433 56778889999998887644
No 138
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.43 E-value=7.6e-13 Score=112.91 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=81.7
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+ ..++.++.+|+.+.+ +++||+|++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~--~~~fD~i~~ 131 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALNG---IYDIALQKTSLLADV--DGKFDLIVA 131 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT---CCCCEEEESSTTTTC--CSCEEEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEeccccccC--CCCceEEEE
Confidence 3567899999999999999988763 4699999999999999999987652 334999999997754 579999999
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
..+++++ ..+++++.++|+++|...+.
T Consensus 132 ~~~~~~~---~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 132 NILAEIL---LDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp ESCHHHH---HHHGGGSGGGEEEEEEEEEE
T ss_pred CCcHHHH---HHHHHHHHHhcCCCCEEEEE
Confidence 9888764 56677777887776655544
No 139
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.43 E-value=6.8e-13 Score=115.85 Aligned_cols=112 Identities=9% Similarity=0.170 Sum_probs=87.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P 232 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p 232 (319)
....+...+...++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++++..+ ...+++++.+|+.+. +
T Consensus 59 ~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~ 136 (232)
T 3ntv_A 59 TLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH--FENQVRIIEGNALEQFE 136 (232)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCHH
T ss_pred HHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHH
Confidence 3455666666667899999999999999999997667799999999999999999987753 235899999999764 3
Q ss_pred -CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 233 -FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 233 -~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
..+++||+|++... ..+...+++++.++|||+|.+
T Consensus 137 ~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~l 172 (232)
T 3ntv_A 137 NVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLV 172 (232)
T ss_dssp HHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEE
T ss_pred hhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEE
Confidence 33689999997654 345567778888777766543
No 140
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.43 E-value=1.2e-12 Score=116.38 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=90.4
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh---cCccCCCCeEEEEcCCCCC--
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DNTILTSNLALVRADVCRL-- 231 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~i~~~~~d~~~l-- 231 (319)
.+..++...++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.|++++.. .+ ...++.++.+|+.+.
T Consensus 27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~--l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA--FSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT--TGGGEEEEECCTTCCHH
T ss_pred HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC--CcceEEEEeCCHHHHhh
Confidence 34445555677899999999999999999998777999999999999999999865 32 223699999999887
Q ss_pred -----CCCCCCccEEEecccccCC------------------CCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 -----PFASGFVDAVHAGAALHCW------------------PSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 -----p~~~~~fD~V~~~~vl~h~------------------~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++.+++||+|+++-.+... .+...+++++.++||++|.+.++..
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 2557899999997433221 2356788889999998887766543
No 141
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.43 E-value=3.1e-13 Score=112.57 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=84.8
Q ss_pred HHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC
Q 020988 156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF 233 (319)
Q Consensus 156 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~ 233 (319)
+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++..+ ...++.++.+|+.+ ++.
T Consensus 20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~ 96 (177)
T 2esr_A 20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDC 96 (177)
T ss_dssp HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHH
T ss_pred HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcHHHhHHh
Confidence 44445554 4578899999999999999998873 4599999999999999999987642 12469999999877 344
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
.+++||+|++...+++ .+....++.+.+ .+.++++|.+++...
T Consensus 97 ~~~~fD~i~~~~~~~~-~~~~~~~~~l~~-~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 97 LTGRFDLVFLDPPYAK-ETIVATIEALAA-KNLLSEQVMVVCETD 139 (177)
T ss_dssp BCSCEEEEEECCSSHH-HHHHHHHHHHHH-TTCEEEEEEEEEEEE
T ss_pred hcCCCCEEEECCCCCc-chHHHHHHHHHh-CCCcCCCcEEEEEEC
Confidence 4567999999866532 234455666652 244555666666443
No 142
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.43 E-value=1e-12 Score=117.54 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=95.2
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL 231 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~l 231 (319)
....+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++... + ....++.++.+|+.+.
T Consensus 87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g-~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSCGGGC
T ss_pred HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCCcEEEEECchHhc
Confidence 3455666667778899999999999999999985 55669999999999999999988653 1 0135899999999988
Q ss_pred CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++++++||+|++ +++++..+++++.++|+|+|...+...
T Consensus 166 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 166 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 877789999998 566888899999999998877666655
No 143
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.43 E-value=3.9e-13 Score=110.85 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=84.0
Q ss_pred HHHHHHhhcc--CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988 156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P 232 (319)
Q Consensus 156 ~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p 232 (319)
+.+...+... ++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.|++++...+ . +++++.+|+.+. +
T Consensus 29 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~~ 102 (171)
T 1ws6_A 29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG---L-GARVVALPVEVFLP 102 (171)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT---C-CCEEECSCHHHHHH
T ss_pred HHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcC---C-ceEEEeccHHHHHH
Confidence 3444444432 678999999999999999999887 69999999999999999987652 2 789999998763 2
Q ss_pred -C--CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 233 -F--ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 233 -~--~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
. ..++||+|++..+++ .+....++.+.+ .+.++++|.+++...
T Consensus 103 ~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~-~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 103 EAKAQGERFTVAFMAPPYA--MDLAALFGELLA-SGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHTTCCEEEEEECCCTT--SCTTHHHHHHHH-HTCEEEEEEEEEEEE
T ss_pred hhhccCCceEEEEECCCCc--hhHHHHHHHHHh-hcccCCCcEEEEEeC
Confidence 1 134899999988765 455667777773 233444556666443
No 144
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.42 E-value=2.7e-13 Score=125.44 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=92.9
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
...+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+++++... ...+.++.+|+...+
T Consensus 183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~~d~~~~~ 258 (343)
T 2pjd_A 183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN----GVEGEVFASNVFSEV 258 (343)
T ss_dssp HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTTC
T ss_pred HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----CCCCEEEEccccccc
Confidence 3456666667555678999999999999999999987679999999999999999998764 234678889987654
Q ss_pred CCCCCccEEEecccccC-----CCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 FASGFVDAVHAGAALHC-----WPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~h-----~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||+|+++.++++ ..+...+++++.++|||+|.+.++..
T Consensus 259 --~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 259 --KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp --CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred --cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 679999999998885 33456778888888888776655443
No 145
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.42 E-value=5.4e-13 Score=111.71 Aligned_cols=118 Identities=13% Similarity=0.069 Sum_probs=84.9
Q ss_pred HHHHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 154 EFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 154 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
..+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++...+ ...+++++.+|+.+..
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~ 107 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMDANRAL 107 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC--CCcceEEEECcHHHHH
Confidence 3344555553 3467899999999999999888764 3599999999999999999887642 1247999999987632
Q ss_pred ----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 233 ----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
..+++||+|++...++ ..+....++.+.. .+.++++|.+++.
T Consensus 108 ~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~-~~~L~~gG~l~~~ 153 (187)
T 2fhp_A 108 EQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLE-RQLLTNEAVIVCE 153 (187)
T ss_dssp HHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred HHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHH-hcccCCCCEEEEE
Confidence 2267899999987754 4466677777721 3334455555554
No 146
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.42 E-value=5.4e-14 Score=120.19 Aligned_cols=114 Identities=17% Similarity=0.084 Sum_probs=70.6
Q ss_pred HHHHHhhc-cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 157 MAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 157 ~l~~~l~~-~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
.+.+.+.. .++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.|++++...+ .+++++++|+.+ ++.+
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~-~~~~ 94 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG----AVVDWAAADGIE-WLIE 94 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH-HHHH
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC----CceEEEEcchHh-hhhh
Confidence 34444443 67889999999999999999999777799999999999999999886642 168888888877 5554
Q ss_pred -----CCccEEEecccccCCCCH--------------------------HHHHHHHHHhhcCCCeeEEEEe
Q 020988 236 -----GFVDAVHAGAALHCWPSP--------------------------SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 236 -----~~fD~V~~~~vl~h~~d~--------------------------~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++||+|+++..+++..+. ..+++++.++|||+|...++..
T Consensus 95 ~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 95 RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 899999996544332211 5667778888888887444443
No 147
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.41 E-value=1.3e-12 Score=115.02 Aligned_cols=104 Identities=15% Similarity=0.263 Sum_probs=83.3
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-----CCCCeEEEEcCCCC-CC--CCCC
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-----LTSNLALVRADVCR-LP--FASG 236 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~~i~~~~~d~~~-lp--~~~~ 236 (319)
.++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.+++++...... ...++.++.+|+.+ ++ +.++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4678999999999999999999987778999999999999999887653000 13589999999987 66 6678
Q ss_pred CccEEEecccccCCCCH-------------HHHHHHHHHhhcCCCeeEEE
Q 020988 237 FVDAVHAGAALHCWPSP-------------SNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~-------------~~~l~el~rvlk~g~~~g~~ 273 (319)
++|.|++. ++++ ..+++++.++|+|||.+.+.
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 99999854 3444 47899999999888766554
No 148
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.41 E-value=1.2e-12 Score=114.42 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=85.0
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
...+.+.+...++.+|||||||+|.++..+++.++ .+|+++|+++.+++.|++++...+ ..++.++.+|+ ..+++
T Consensus 80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~-~~~~~ 154 (235)
T 1jg1_A 80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDG-SKGFP 154 (235)
T ss_dssp HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCG-GGCCG
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEECCc-ccCCC
Confidence 34555666777889999999999999999999874 599999999999999999987642 35699999997 34444
Q ss_pred C-CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 235 S-GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 235 ~-~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+ .+||+|++..+++++++ ++.++|+|+|...+.
T Consensus 155 ~~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~ 188 (235)
T 1jg1_A 155 PKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIP 188 (235)
T ss_dssp GGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred CCCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEE
Confidence 3 35999999999999863 567777766544433
No 149
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.41 E-value=1.8e-12 Score=116.05 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=68.9
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+. .++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++....+ ..++.++++|+.+. +++
T Consensus 100 ~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~---~~~v~~~~~d~~~~-~~~ 174 (276)
T 2b3t_A 100 EQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDWFSA-LAG 174 (276)
T ss_dssp HHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCSTTGG-GTT
T ss_pred HHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEcchhhh-ccc
Confidence 34444443 56789999999999999999988667799999999999999999987652 34799999999763 346
Q ss_pred CCccEEEec
Q 020988 236 GFVDAVHAG 244 (319)
Q Consensus 236 ~~fD~V~~~ 244 (319)
++||+|+++
T Consensus 175 ~~fD~Iv~n 183 (276)
T 2b3t_A 175 QQFAMIVSN 183 (276)
T ss_dssp CCEEEEEEC
T ss_pred CCccEEEEC
Confidence 789999998
No 150
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.41 E-value=3.9e-12 Score=118.05 Aligned_cols=129 Identities=19% Similarity=0.031 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
......+.......++.+|||+|||+|.++..++..+ +..+++|+|+|+.+++.|+++++..+ ..+++++++|+.+
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g---~~~i~~~~~D~~~ 265 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG---LSWIRFLRADARH 265 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT---CTTCEEEECCGGG
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC---CCceEEEeCChhh
Confidence 3345566666666788999999999999999999976 66799999999999999999998753 2389999999999
Q ss_pred CCCCCCCccEEEecccccCCCC--------HHHHHHHHHHhhcCCCeeEEEEeeccchhcc
Q 020988 231 LPFASGFVDAVHAGAALHCWPS--------PSNAASVFSSSYSLLSICYLLQFRYTKIIEL 283 (319)
Q Consensus 231 lp~~~~~fD~V~~~~vl~h~~d--------~~~~l~el~rvlk~g~~~g~~~~~~~~~~~~ 283 (319)
++.+.+.||+|+++-.+..... ...+++++.++++|+|...++......+.+.
T Consensus 266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~ 326 (354)
T 3tma_A 266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRA 326 (354)
T ss_dssp GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHHH
T ss_pred CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence 8877778999999654432211 2567888999999998877766654333333
No 151
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.40 E-value=2.2e-12 Score=115.55 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=93.6
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
....+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|+++++..+ ...++.++.+|+.+.
T Consensus 100 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~- 176 (277)
T 1o54_A 100 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISEG- 176 (277)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGGC-
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHc-
Confidence 3455666677778899999999999999999998 666799999999999999999987642 124789999998776
Q ss_pred CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++++||+|++ +.+++..+++++.++|+|+|...+...
T Consensus 177 ~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 177 FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 56678999998 467888899999999998876665554
No 152
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.40 E-value=1.6e-12 Score=120.52 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=85.6
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..+ ...+++++.+|+.+++++
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~~~- 114 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSLP- 114 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcC--CCCcEEEEEcchhhCCCC-
Confidence 344555556688999999999999999998874 46999999996 8899999887653 236899999999998765
Q ss_pred CCccEEEecccccCCCC--HHHHHHHHHHhhcCCCe
Q 020988 236 GFVDAVHAGAALHCWPS--PSNAASVFSSSYSLLSI 269 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d--~~~~l~el~rvlk~g~~ 269 (319)
++||+|++..+++|+.+ ....+.++.++|||+|.
T Consensus 115 ~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 150 (348)
T 2y1w_A 115 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGN 150 (348)
T ss_dssp SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeE
Confidence 68999999998888754 34566666677666543
No 153
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.40 E-value=1.7e-12 Score=122.98 Aligned_cols=114 Identities=8% Similarity=-0.034 Sum_probs=87.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHH-------HHHHhhcCccC-CCCeEEEEc
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-------YDFIKQDNTIL-TSNLALVRA 226 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a-------~~~~~~~~~~~-~~~i~~~~~ 226 (319)
...+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+++.+++.| ++++...+ . ..+++++.+
T Consensus 231 v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G--l~~~nV~~i~g 308 (433)
T 1u2z_A 231 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG--MRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT--BCCCCEEEEES
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC--CCCCceEEEEc
Confidence 4555566667788999999999999999999875445899999999999998 77776542 1 258999988
Q ss_pred CCCCC--CC--CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 227 DVCRL--PF--ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 227 d~~~l--p~--~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
|.... ++ ..++||+|+++.++ +.+++...++++.++|||||...
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lV 356 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKII 356 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEE
T ss_pred CccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEE
Confidence 65432 22 24689999998776 44677788889999988887543
No 154
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.40 E-value=2.3e-12 Score=113.68 Aligned_cols=113 Identities=8% Similarity=0.030 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-
Q 020988 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR- 230 (319)
Q Consensus 153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~- 230 (319)
...+.+..+....++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+ ...+++++.+|+.+
T Consensus 50 ~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~ 127 (248)
T 3tfw_A 50 NQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG--VDQRVTLREGPALQS 127 (248)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHH
Confidence 3344555555566789999999999999999999855 5799999999999999999987653 23579999999866
Q ss_pred CCCC--CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 231 LPFA--SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 231 lp~~--~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
++.. .++||+|++... ..+....++++.++|||||..
T Consensus 128 l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~l 166 (248)
T 3tfw_A 128 LESLGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLI 166 (248)
T ss_dssp HHTCCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEE
T ss_pred HHhcCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEE
Confidence 3322 348999998653 335567889999999998744
No 155
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.39 E-value=2.9e-13 Score=117.93 Aligned_cols=105 Identities=16% Similarity=0.108 Sum_probs=76.1
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCC-HHHHHHH---HHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCcc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS-ENMLRQC---YDFIKQDNTILTSNLALVRADVCRLPFA-SGFVD 239 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s-~~~l~~a---~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD 239 (319)
.++.+|||||||+|.++..+++..+..+|+|+|+| +.|++.| +++.... ...++.++++|+..+|.. .+.+|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~---~~~~v~~~~~d~~~l~~~~~d~v~ 99 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG---GLSNVVFVIAAAESLPFELKNIAD 99 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT---CCSSEEEECCBTTBCCGGGTTCEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEcCHHHhhhhccCeEE
Confidence 56789999999999999999977677799999999 7777776 6665543 245899999999988632 13444
Q ss_pred EEEecccccC-----CCCHHHHHHHHHHhhcCCCeeEE
Q 020988 240 AVHAGAALHC-----WPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 240 ~V~~~~vl~h-----~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
.|++...+.+ ..++..++++++|+|||||.+.+
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 4444332111 12335678999999998877665
No 156
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.39 E-value=1.9e-12 Score=112.75 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=88.9
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P 232 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p 232 (319)
....+...+...++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++...+ ...++.++.+|+.+. +
T Consensus 42 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~ 119 (233)
T 2gpy_A 42 GMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG--LESRIELLFGDALQLGE 119 (233)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCGGGSHH
T ss_pred HHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHH
Confidence 3556666666678899999999999999999998766799999999999999999987643 224799999998774 4
Q ss_pred CC--CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 233 FA--SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 233 ~~--~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
.. +++||+|++....+ +....++++.++|+|+|..
T Consensus 120 ~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~l 156 (233)
T 2gpy_A 120 KLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLI 156 (233)
T ss_dssp HHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEE
T ss_pred hcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEE
Confidence 32 57899999987754 6677788888887766543
No 157
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.39 E-value=1.1e-12 Score=121.48 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=85.3
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~ 237 (319)
+.+.+...++.+|||||||+|.++..+++..+..+++++|++ .++. +++.+.. ....+++++.+|+. .+++ +
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~--~~~~~v~~~~~d~~-~~~p--~ 247 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAP--DVAGRWKVVEGDFL-REVP--H 247 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCG--GGTTSEEEEECCTT-TCCC--C
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--ccccccc--CCCCCeEEEecCCC-CCCC--C
Confidence 344444556789999999999999999999888899999994 4444 2222211 13467999999996 3444 8
Q ss_pred ccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 238 VDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
||+|++.+++||++++ ..++++++++|||||.+.+..+
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999999999999988 5899999999999987665544
No 158
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.39 E-value=2.9e-12 Score=111.05 Aligned_cols=107 Identities=20% Similarity=0.282 Sum_probs=84.6
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhC-----CCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCCCCC---
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRLP--- 232 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g-----~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~~lp--- 232 (319)
...++.+|||||||+|.++..+++.. +..+|+|+|+++.+++.|++++...+. ....++.++.+|+....
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 35678899999999999999999875 356999999999999999999876420 00357999999998765
Q ss_pred -CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 -FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 -~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
...++||+|++..+++|+. +++.++|+|+|...+.+.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASELP------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSCC------HHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEc
Confidence 5567899999999999873 667888887765544433
No 159
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.39 E-value=1e-12 Score=122.83 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=83.8
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++ ..+++++.+|+.+ ++++ ||+|++
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~--~D~v~~ 273 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVPQ--GDAMIL 273 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC--EEEEEE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCCC--CCEEEE
Confidence 34578999999999999999999988888999999 888877664 2479999999987 6654 999999
Q ss_pred cccccCCCCHH--HHHHHHHHhhcCCCeeEEEE
Q 020988 244 GAALHCWPSPS--NAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 244 ~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~ 274 (319)
.+++||++++. .++++++++|+|+|...+..
T Consensus 274 ~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 274 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999887 89999999999876655553
No 160
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.38 E-value=3.9e-12 Score=110.15 Aligned_cols=103 Identities=22% Similarity=0.314 Sum_probs=81.9
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCCCCCCCCCCccE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRLPFASGFVDA 240 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (319)
..++.+|||||||+|.++..+++. ++..+|+++|+++.+++.+++++...+. ....++.++.+|+...+..+++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 567899999999999999999887 4546999999999999999998865321 0034799999999876655678999
Q ss_pred EEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
|++..+++++. +++.++|||+|...+
T Consensus 155 i~~~~~~~~~~------~~~~~~LkpgG~lv~ 180 (226)
T 1i1n_A 155 IHVGAAAPVVP------QALIDQLKPGGRLIL 180 (226)
T ss_dssp EEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred EEECCchHHHH------HHHHHhcCCCcEEEE
Confidence 99999998874 467778777654443
No 161
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.38 E-value=1.4e-12 Score=107.56 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=82.7
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------CC
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA 234 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~ 234 (319)
..++.+|||+|||+|.++..+++. ++..+++|+|+++ +++ ..++.++.+|+.+.+ ++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence 467889999999999999999988 5557999999999 652 247899999998876 67
Q ss_pred CCCccEEEecccccCCCCH-----------HHHHHHHHHhhcCCCeeEEEEee
Q 020988 235 SGFVDAVHAGAALHCWPSP-----------SNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+++||+|++..++++..+. ...++++.++++++|...+..+.
T Consensus 86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 7899999999999988776 67889999999888776655553
No 162
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.38 E-value=4.6e-12 Score=113.89 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=87.2
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeC-CHHHHHHHHHHHh-----hcCcc--CCCCeEEEEcC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF-SENMLRQCYDFIK-----QDNTI--LTSNLALVRAD 227 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~-s~~~l~~a~~~~~-----~~~~~--~~~~i~~~~~d 227 (319)
+.+.......++.+|||||||+|.++..+++.+ ..+|+|+|+ |+.+++.|+++.. ..+.. ...++.+...|
T Consensus 69 ~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~ 147 (281)
T 3bzb_A 69 DTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYR 147 (281)
T ss_dssp HHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECC
T ss_pred HHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEec
Confidence 344444444577899999999999999988875 358999999 8999999999883 32100 00367787665
Q ss_pred CCCCC--C----CCCCccEEEecccccCCCCHHHHHHHHHHhhc---C--CCeeEEE
Q 020988 228 VCRLP--F----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYS---L--LSICYLL 273 (319)
Q Consensus 228 ~~~lp--~----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk---~--g~~~g~~ 273 (319)
..+.. + .+++||+|++..+++|.++...+++.+.++|+ + +|...++
T Consensus 148 ~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 148 WGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp TTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred CCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 44321 1 35789999999999999999999999999999 8 7765543
No 163
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.37 E-value=3.4e-12 Score=111.25 Aligned_cols=105 Identities=18% Similarity=0.136 Sum_probs=81.8
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC---CCCCCCCc
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGFV 238 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~f 238 (319)
...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+.++.+.. .++.++.+|+.+ +++.+++|
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCCCE
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCCcE
Confidence 3457889999999999999999987 35569999999999888887776552 589999999987 45557899
Q ss_pred cEEEecccccCCCCH-HHHHHHHHHhhcCCCeeEEEEe
Q 020988 239 DAVHAGAALHCWPSP-SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 239 D~V~~~~vl~h~~d~-~~~l~el~rvlk~g~~~g~~~~ 275 (319)
|+|++... .++. ..+++++.++|||+|...+.+.
T Consensus 149 D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 149 DVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp EEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 99998544 2233 3447789999998877666433
No 164
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.37 E-value=9.7e-13 Score=118.63 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=85.0
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....+ ...+++++.+|+.++++
T Consensus 16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~D~~~~~~ 91 (285)
T 1zq9_A 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTDL 91 (285)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSCC
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcceecccc
Confidence 345566667677889999999999999999999876 99999999999999999875431 12479999999998876
Q ss_pred CCCCccEEEec-----------ccccCCCCHHHHH----HHH--HHhhcCCCee
Q 020988 234 ASGFVDAVHAG-----------AALHCWPSPSNAA----SVF--SSSYSLLSIC 270 (319)
Q Consensus 234 ~~~~fD~V~~~-----------~vl~h~~d~~~~l----~el--~rvlk~g~~~ 270 (319)
+ +||+|+++ .+++|.++...++ +|+ +++++||+..
T Consensus 92 ~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 92 P--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp C--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred h--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 5 79999996 3555555443211 333 4689999865
No 165
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.37 E-value=4.7e-12 Score=116.62 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=88.2
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcC------c--cCCCCeEEE
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDN------T--ILTSNLALV 224 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~------~--~~~~~i~~~ 224 (319)
....+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++...+ . ....+++++
T Consensus 93 ~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 93 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 3455666667788999999999999999999987 666799999999999999999887421 0 012589999
Q ss_pred EcCCCCC--CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 225 RADVCRL--PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 225 ~~d~~~l--p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+|+.+. ++++++||+|++. .+++...++++.++|+|+|.+.+...
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred ECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9999886 5666789999984 34555678899999998877765554
No 166
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.37 E-value=1.5e-12 Score=120.62 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=83.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++. .+++++.+|+.+ +++ .||+|++.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~p--~~D~v~~~ 253 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---------NNLTYVGGDMFT-SIP--NADAVLLK 253 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---------TTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---------CCcEEEeccccC-CCC--CccEEEee
Confidence 4568999999999999999999987789999999 9998877641 369999999976 555 39999999
Q ss_pred ccccCCCCHH--HHHHHHHHhhcC---CCeeEEEEe
Q 020988 245 AALHCWPSPS--NAASVFSSSYSL---LSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~--~~l~el~rvlk~---g~~~g~~~~ 275 (319)
+++||++++. ..+++++++||| +|...+..+
T Consensus 254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 9999999888 899999999999 776655544
No 167
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.37 E-value=4.8e-12 Score=113.63 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=85.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||+|||+|.++..+++.+.. +|+|+|+|+.+++.|+++++.++ ...+++++++|+.+++. +++||+|++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~--~~~~v~~~~~D~~~~~~-~~~fD~Vi~~ 199 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-ENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECCHHHhcc-cCCccEEEEC
Confidence 45889999999999999999998863 69999999999999999987653 23459999999999876 6899999885
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
.. .+...+++++.++|+|||...+..+.
T Consensus 200 ~p----~~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 200 YV----VRTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp CC----SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred Cc----hhHHHHHHHHHHHCCCCeEEEEEEee
Confidence 33 34567788999999987766555554
No 168
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.37 E-value=1.2e-11 Score=108.35 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=92.9
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
...+...+...++.+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++....+ ...++.++.+|+.+..+.
T Consensus 80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~ 155 (248)
T 2yvl_A 80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQKNLKKFN--LGKNVKFFNVDFKDAEVP 155 (248)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHHHHTT--CCTTEEEECSCTTTSCCC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHcC--CCCcEEEEEcChhhcccC
Confidence 3456666667788999999999999999999884 499999999999999999887642 225799999999885435
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+++||+|++ +.+++..+++++.++|+++|...+...
T Consensus 156 ~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 156 EGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 678999987 566888889999999999998777666
No 169
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.36 E-value=3e-12 Score=109.74 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=82.3
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFA 234 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~ 234 (319)
.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+|+.+++.|+++++..+ ...+++++.+|+.+. +..
T Consensus 47 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~ 124 (210)
T 3c3p_A 47 LLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG--LIDRVELQVGDPLGIAAGQ 124 (210)
T ss_dssp HHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS--GGGGEEEEESCHHHHHTTC
T ss_pred HHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCceEEEEEecHHHHhccC
Confidence 333334445678999999999999999998754 5699999999999999999887643 234699999998653 544
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
++ ||+|++... ..+....++++.++|+|+|.
T Consensus 125 ~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~ 155 (210)
T 3c3p_A 125 RD-IDILFMDCD---VFNGADVLERMNRCLAKNAL 155 (210)
T ss_dssp CS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEE
T ss_pred CC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeE
Confidence 46 999998743 34677888888888777654
No 170
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.36 E-value=1.8e-12 Score=113.72 Aligned_cols=107 Identities=11% Similarity=-0.013 Sum_probs=83.1
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
..+...+...++.+|||||||+|..+..+++. ++..+|+|+|+|+.+++.|+. ...+++++++|+.+.
T Consensus 71 ~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~--------~~~~v~~~~gD~~~~ 142 (236)
T 2bm8_A 71 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDL 142 (236)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCS
T ss_pred HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc--------cCCceEEEECcchhH
Confidence 34444444456789999999999999999887 556799999999999888872 135899999999884
Q ss_pred ---CCCC-CCccEEEecccccCCCCHHHHHHHHHH-hhcCCCeeEEE
Q 020988 232 ---PFAS-GFVDAVHAGAALHCWPSPSNAASVFSS-SYSLLSICYLL 273 (319)
Q Consensus 232 ---p~~~-~~fD~V~~~~vl~h~~d~~~~l~el~r-vlk~g~~~g~~ 273 (319)
+..+ .+||+|++... |. +....++++.+ +|||||.+.+.
T Consensus 143 ~~l~~~~~~~fD~I~~d~~--~~-~~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 143 TTFEHLREMAHPLIFIDNA--HA-NTFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp GGGGGGSSSCSSEEEEESS--CS-SHHHHHHHHHHHTCCTTCEEEEC
T ss_pred HHHHhhccCCCCEEEECCc--hH-hHHHHHHHHHHhhCCCCCEEEEE
Confidence 5433 47999998665 43 77888999997 99998865543
No 171
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.36 E-value=3.9e-12 Score=113.21 Aligned_cols=115 Identities=15% Similarity=0.025 Sum_probs=85.7
Q ss_pred HHHhhc-cCCCeEEEEcCCc--ChHHHHH-HhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988 159 QEYFKS-AQGGLLVDVSCGS--GLFSRKF-AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (319)
Q Consensus 159 ~~~l~~-~~~~~VLDiGcG~--G~~~~~l-~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (319)
.+++.. ....+|||||||+ +.++..+ .+..+..+|+++|.|+.|++.|++++... ...+++++++|+.+++
T Consensus 70 v~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---~~~~~~~v~aD~~~~~~~ 146 (277)
T 3giw_A 70 VAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---PEGRTAYVEADMLDPASI 146 (277)
T ss_dssp HHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---SSSEEEEEECCTTCHHHH
T ss_pred HHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---CCCcEEEEEecccChhhh
Confidence 334432 3346899999997 4344444 44467789999999999999999988642 1246999999998852
Q ss_pred ----CCCCCcc-----EEEecccccCCCC---HHHHHHHHHHhhcCCCeeEEEEee
Q 020988 233 ----FASGFVD-----AVHAGAALHCWPS---PSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 233 ----~~~~~fD-----~V~~~~vl~h~~d---~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
...+.|| .|+++.+|||+++ +..+++++.+.|+||+.+.+..+.
T Consensus 147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 1134565 6889999999998 567899999999999987766553
No 172
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.35 E-value=6.3e-12 Score=108.57 Aligned_cols=112 Identities=13% Similarity=0.000 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
....+.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+ ...+++++.+|+.+
T Consensus 44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~ 121 (223)
T 3duw_A 44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN--LNDRVEVRTGLALD 121 (223)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence 33445555555666789999999999999999999855 5699999999999999999987653 23469999999865
Q ss_pred C-C-CC---CCCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988 231 L-P-FA---SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 231 l-p-~~---~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
. + +. .++||+|++..... +....++++.++|+|||
T Consensus 122 ~~~~~~~~~~~~fD~v~~d~~~~---~~~~~l~~~~~~L~pgG 161 (223)
T 3duw_A 122 SLQQIENEKYEPFDFIFIDADKQ---NNPAYFEWALKLSRPGT 161 (223)
T ss_dssp HHHHHHHTTCCCCSEEEECSCGG---GHHHHHHHHHHTCCTTC
T ss_pred HHHHHHhcCCCCcCEEEEcCCcH---HHHHHHHHHHHhcCCCc
Confidence 3 2 11 26799999876533 44678889999999987
No 173
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.35 E-value=4.3e-12 Score=110.16 Aligned_cols=101 Identities=9% Similarity=0.031 Sum_probs=79.2
Q ss_pred CCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCC-CCeEEEEcCCCCC-C-CCCCCccEEE
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRL-P-FASGFVDAVH 242 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~i~~~~~d~~~l-p-~~~~~fD~V~ 242 (319)
+.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+ .. .+++++.+|+.+. + +.+++||+|+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 3499999999999999999864 36799999999999999999998753 22 4799999998664 2 3368999999
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+.... .+....++++.++|||| |.+++
T Consensus 135 ~d~~~---~~~~~~l~~~~~~LkpG---G~lv~ 161 (221)
T 3dr5_A 135 GQVSP---MDLKALVDAAWPLLRRG---GALVL 161 (221)
T ss_dssp ECCCT---TTHHHHHHHHHHHEEEE---EEEEE
T ss_pred EcCcH---HHHHHHHHHHHHHcCCC---cEEEE
Confidence 86543 35566788888887765 55555
No 174
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.35 E-value=3.6e-12 Score=109.42 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=74.5
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||||||+|.++..+. .+++|+|+|+. ++.++++|+.++++++++||+|++
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEE
Confidence 4567899999999999988772 38999999986 345789999999988899999999
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
..++|| .++..+++++.++|+|+|...+..+
T Consensus 122 ~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 122 CLSLMG-TNIRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp ESCCCS-SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ehhccc-cCHHHHHHHHHHhCCCCeEEEEEEc
Confidence 999975 8999999999999998776655443
No 175
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.35 E-value=3.3e-12 Score=119.25 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=83.8
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|+.+ |++++ |+|++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p~~--D~v~~ 267 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVPKG--DAIFI 267 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC--SEEEE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCCCC--CEEEE
Confidence 34568999999999999999999988889999999 888876653 2589999999987 66654 99999
Q ss_pred cccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 244 GAALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 244 ~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+++||+++.. ..+++++++|+|+|...+..+
T Consensus 268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999998765 679999999999987666544
No 176
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.34 E-value=3e-12 Score=112.86 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=81.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHhh--CCCCeEEEEeCCHHHHHHHHHHHhhc---CccCCCC-------------------
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQD---NTILTSN------------------- 220 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~--g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~------------------- 220 (319)
.++.+|||+|||+|.++..+++. .+..+|+|+|+|+.+++.|++++... +. ..+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 127 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL--TARELERREQSERFGKPSYLEA 127 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH--HHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc--cccchhhhhhhhhcccccchhh
Confidence 35679999999999999999887 44458999999999999999877542 10 001
Q ss_pred ------eE-------------EEEcCCCCCCC-----CCCCccEEEecccccCCCC---------HHHHHHHHHHhhcCC
Q 020988 221 ------LA-------------LVRADVCRLPF-----ASGFVDAVHAGAALHCWPS---------PSNAASVFSSSYSLL 267 (319)
Q Consensus 221 ------i~-------------~~~~d~~~lp~-----~~~~fD~V~~~~vl~h~~d---------~~~~l~el~rvlk~g 267 (319)
++ ++++|+.+... ..++||+|+++..+.+..+ ...+++++.++|+|+
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 207 (250)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence 55 99999887431 3458999999876665543 347889999999999
Q ss_pred CeeEE
Q 020988 268 SICYL 272 (319)
Q Consensus 268 ~~~g~ 272 (319)
|...+
T Consensus 208 G~l~~ 212 (250)
T 1o9g_A 208 AVIAV 212 (250)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87765
No 177
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.34 E-value=3.6e-12 Score=110.66 Aligned_cols=109 Identities=20% Similarity=0.323 Sum_probs=81.8
Q ss_pred HHHHHh--hccCCCeEEEEcCCcChHHHHHHhhCC------CCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEc
Q 020988 157 MAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSGT------YSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRA 226 (319)
Q Consensus 157 ~l~~~l--~~~~~~~VLDiGcG~G~~~~~l~~~g~------~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~ 226 (319)
.+.+.+ ...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|++++...+. ....++.++.+
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 152 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 152 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence 334444 356788999999999999999988532 24899999999999999998765310 00247999999
Q ss_pred CCCCCCCCC-CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 227 DVCRLPFAS-GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 227 d~~~lp~~~-~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
|+.. ++++ ++||+|++..+++|++ +++.++|||+|...+
T Consensus 153 d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi 192 (227)
T 1r18_A 153 DGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIV 192 (227)
T ss_dssp CGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEE
T ss_pred Cccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEE
Confidence 9877 4444 7899999999999985 567777776654433
No 178
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.34 E-value=5.3e-12 Score=117.67 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=84.0
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|+.+ |++++ |+|++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p~~--D~v~~ 265 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVPSG--DTILM 265 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC--SEEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCCCC--CEEEe
Confidence 45678999999999999999999988889999999 888876653 2589999999987 77654 99999
Q ss_pred cccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 244 GAALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 244 ~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
.+++||+++.. ..+++++++|||+|...+..+
T Consensus 266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999997654 779999999999987766544
No 179
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.34 E-value=7.3e-12 Score=112.08 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=85.3
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.|+++++.++ ..++.++.+|+.+.+. .++||+|++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~---l~~~~~~~~d~~~~~~-~~~~D~Vi~ 192 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK---LNNVIPILADNRDVEL-KDVADRVIM 192 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT---CSSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEECChHHcCc-cCCceEEEE
Confidence 456789999999999999999998666799999999999999999987753 4578999999988744 578999998
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.... +....+.++.++++|+|...+..+
T Consensus 193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 193 GYVH----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp CCCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCcc----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 7653 566778888899888765554433
No 180
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.33 E-value=9.7e-12 Score=107.77 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=81.4
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCcc
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD 239 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD 239 (319)
..++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.++++.+. ..++.++.+|+.+.. ...++||
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~D 145 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----cCCCEEEEccCCCcchhhcccCCce
Confidence 457889999999999999999987 4556999999999999999988764 268999999998732 1236899
Q ss_pred EEEecccccCCCCHH-HHHHHHHHhhcCCCeeEEE
Q 020988 240 AVHAGAALHCWPSPS-NAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 240 ~V~~~~vl~h~~d~~-~~l~el~rvlk~g~~~g~~ 273 (319)
+|++... .++.. .+++++.++|||+|.+.+.
T Consensus 146 ~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 146 VIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 9998654 23443 4489999999998877666
No 181
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.33 E-value=7.2e-12 Score=114.51 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=86.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
...+...+...++.+|||+|||+|..+..+++... ..+|+|+|+|+.+++.++++++..+ ..++.++.+|+..++.
T Consensus 107 s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~~~ 183 (315)
T 1ixk_A 107 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHIGE 183 (315)
T ss_dssp HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGGGG
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC---CCeEEEEECChhhccc
Confidence 34455666778889999999999999999998743 3689999999999999999987753 3579999999988765
Q ss_pred CCCCccEEEec------ccccCCCCH----------------HHHHHHHHHhhcCCCeeEE
Q 020988 234 ASGFVDAVHAG------AALHCWPSP----------------SNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 234 ~~~~fD~V~~~------~vl~h~~d~----------------~~~l~el~rvlk~g~~~g~ 272 (319)
.+++||+|++. +++.+.++. ..+++++.++|||||.+..
T Consensus 184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~ 244 (315)
T 1ixk_A 184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY 244 (315)
T ss_dssp GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 56789999983 345544331 3667777788777665533
No 182
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.32 E-value=9.1e-12 Score=116.11 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=83.2
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++++|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++.++.++ ...+|+++.+|++++.++ ++||+|++
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~--~~~~i~~i~~~~~~~~lp-e~~Dvivs 155 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNG--LEDRVHVLPGPVETVELP-EQVDAIVS 155 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred hcCCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcC--CCceEEEEeeeeeeecCC-ccccEEEe
Confidence 34688999999999999999888874 5899999996 8899999887764 456799999999998876 68999998
Q ss_pred ---cccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 244 ---GAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 244 ---~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
...+.+-.....++....|+|||+|.
T Consensus 156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~ 184 (376)
T 4hc4_A 156 EWMGYGLLHESMLSSVLHARTKWLKEGGL 184 (376)
T ss_dssp CCCBTTBTTTCSHHHHHHHHHHHEEEEEE
T ss_pred ecccccccccchhhhHHHHHHhhCCCCce
Confidence 45666666777778888888887653
No 183
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.32 E-value=3.6e-12 Score=110.24 Aligned_cols=111 Identities=9% Similarity=0.006 Sum_probs=84.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p 232 (319)
...+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+ ...+++++.+|+.+. +
T Consensus 53 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~ 130 (225)
T 3tr6_A 53 AQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG--LSDKIGLRLSPAKDTLA 130 (225)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeCCHHHHHH
Confidence 44555555556788999999999999999998754 5699999999999999999987753 234699999998553 2
Q ss_pred -CCC----CCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 233 -FAS----GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 233 -~~~----~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
+.. ++||+|++... ..+....++++.++|+|||.+
T Consensus 131 ~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~l 170 (225)
T 3tr6_A 131 ELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLI 170 (225)
T ss_dssp HHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEE
T ss_pred HhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEE
Confidence 111 78999997554 234667788888888876543
No 184
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.31 E-value=2.5e-11 Score=103.05 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=70.3
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++.. +++++++|+.+++ ++||+|++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~d~~~~~---~~~D~v~~ 116 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCG--------GVNFMVADVSEIS---GKYDTWIM 116 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCT--------TSEEEECCGGGCC---CCEEEEEE
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhcC--------CCEEEECcHHHCC---CCeeEEEE
Confidence 3467899999999999999998874 3479999999999999999752 7899999998875 68999999
Q ss_pred cccccCCCCH--HHHHHHHHHhh
Q 020988 244 GAALHCWPSP--SNAASVFSSSY 264 (319)
Q Consensus 244 ~~vl~h~~d~--~~~l~el~rvl 264 (319)
+..++|+.+. ...++++.+++
T Consensus 117 ~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 117 NPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp CCCC-------CHHHHHHHHHHE
T ss_pred CCCchhccCchhHHHHHHHHHhc
Confidence 9999998652 35667777765
No 185
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.31 E-value=3e-12 Score=108.66 Aligned_cols=99 Identities=9% Similarity=0.196 Sum_probs=76.6
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCC--CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---------
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------- 232 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------- 232 (319)
..++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.. ...++.++++|+.+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------------~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------------PIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------------CCTTCEEEECCTTTTSSCCC-----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------------CCCCceEEEccccchhhhhhccccc
Confidence 35678999999999999999998865 5799999999831 1347899999998876
Q ss_pred ----------------CCCCCccEEEecccccCCC----CHH-------HHHHHHHHhhcCCCeeEEEEee
Q 020988 233 ----------------FASGFVDAVHAGAALHCWP----SPS-------NAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 233 ----------------~~~~~fD~V~~~~vl~h~~----d~~-------~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+++++||+|++..++++.. +.. .+++++.++|||+|.+.+.++.
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 5667999999988877642 222 2677888888888776655553
No 186
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.31 E-value=8.8e-12 Score=109.97 Aligned_cols=112 Identities=10% Similarity=0.031 Sum_probs=88.1
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p 232 (319)
...+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+ ...+++++.+|+.+. +
T Consensus 68 ~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~ 145 (247)
T 1sui_A 68 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPVLD 145 (247)
T ss_dssp HHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHHH
Confidence 34444455556778999999999999999998854 5699999999999999999987653 235799999998653 3
Q ss_pred -C-----CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 233 -F-----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 233 -~-----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
+ .+++||+|++... ..+....++++.++|||||...
T Consensus 146 ~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv 187 (247)
T 1sui_A 146 EMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIG 187 (247)
T ss_dssp HHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEE
T ss_pred HHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEE
Confidence 2 1578999998754 3466788999999999998654
No 187
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.30 E-value=3.7e-12 Score=112.42 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC---CCC---CCCcc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFA---SGFVD 239 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~---~~~fD 239 (319)
++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+ ...+++++++|+.+. +++ +++||
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYD 142 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC--CCccEEEEEcchhhhhhhhhhcccCCccc
Confidence 5679999999999999888877544699999999999999999987653 234599999998762 444 26899
Q ss_pred EEEecccccCCC-C--------------HHHHHHHHHHhhcCCCee
Q 020988 240 AVHAGAALHCWP-S--------------PSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 240 ~V~~~~vl~h~~-d--------------~~~~l~el~rvlk~g~~~ 270 (319)
+|+++..+++.. + ....+.++.++|||+|..
T Consensus 143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l 188 (254)
T 2h00_A 143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGEL 188 (254)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHH
T ss_pred EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEE
Confidence 999986554432 0 112345666677776643
No 188
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.30 E-value=1.2e-12 Score=115.26 Aligned_cols=112 Identities=8% Similarity=0.029 Sum_probs=86.0
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL- 231 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l- 231 (319)
....+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+ ...+++++.+|+.+.
T Consensus 48 ~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l 125 (242)
T 3r3h_A 48 QAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK--QEHKIKLRLGPALDTL 125 (242)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT--CTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHH
Confidence 345555555556788999999999999999998753 5799999999999999999987753 235899999998664
Q ss_pred CCC-----CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 232 PFA-----SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 232 p~~-----~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
+.. +++||+|++... ..+....++++.++|+|||.+
T Consensus 126 ~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~l 166 (242)
T 3r3h_A 126 HSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLI 166 (242)
T ss_dssp HHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEE
T ss_pred HHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEE
Confidence 211 478999998755 234566788888887776543
No 189
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.30 E-value=2.3e-11 Score=109.53 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=82.8
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....+ ...+++++++|+.+. +.
T Consensus 112 v~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~--l~~~v~~~~~D~~~~-~~ 187 (284)
T 1nv8_A 112 VELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEP-FK 187 (284)
T ss_dssp HHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGG-GG
T ss_pred HHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcchhh-cc
Confidence 344445554446789999999999999999998 66799999999999999999987753 223599999999873 32
Q ss_pred CCCc---cEEEec------------ccccCCCC--------HHHHHHHHH-HhhcCCCeeE
Q 020988 235 SGFV---DAVHAG------------AALHCWPS--------PSNAASVFS-SSYSLLSICY 271 (319)
Q Consensus 235 ~~~f---D~V~~~------------~vl~h~~d--------~~~~l~el~-rvlk~g~~~g 271 (319)
++| |+|+++ .+. |-+. ....++++. +.++|+|.+.
T Consensus 188 -~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~ 246 (284)
T 1nv8_A 188 -EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVL 246 (284)
T ss_dssp -GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEE
T ss_pred -cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEE
Confidence 578 999997 222 3322 225678888 8888776544
No 190
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.29 E-value=7.5e-12 Score=116.25 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=83.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~ 258 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLK 258 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEc
Confidence 4568999999999999999999988889999999 788876653 2469999999987 665 49999999
Q ss_pred ccccCCCCHH--HHHHHHHHhhcC---CCeeEEEEe
Q 020988 245 AALHCWPSPS--NAASVFSSSYSL---LSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~--~~l~el~rvlk~---g~~~g~~~~ 275 (319)
+++||++|+. ..+++++++++| +|...+..+
T Consensus 259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 9999999987 999999999999 776555443
No 191
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.29 E-value=4.3e-11 Score=104.44 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=77.7
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCc
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV 238 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f 238 (319)
...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++...+..+. ..|+.++.+|+.... ...++|
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----r~nv~~i~~Da~~~~~~~~~~~~~ 147 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----RPNIFPLLADARFPQSYKSVVENV 147 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----CTTEEEEECCTTCGGGTTTTCCCE
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCeEEEEcccccchhhhccccce
Confidence 3678999999999999999999876 5567999999999987665544433 258999999997643 124689
Q ss_pred cEEEecccccCCCCHHHHH-HHHHHhhcCCCeeEEEE
Q 020988 239 DAVHAGAALHCWPSPSNAA-SVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l-~el~rvlk~g~~~g~~~ 274 (319)
|+|++..+. ++....+ ..+.++|||||.+.+.+
T Consensus 148 D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 148 DVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp EEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 999997553 4555544 45566888887666554
No 192
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.29 E-value=2.1e-11 Score=117.58 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=84.1
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 236 (319)
.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..+ ...+++++.+|+.+++++ +
T Consensus 149 ~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~g--l~~~v~~~~~d~~~~~~~-~ 223 (480)
T 3b3j_A 149 AILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSLP-E 223 (480)
T ss_dssp HHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-S
T ss_pred HHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHcC--CCCcEEEEECchhhCccC-C
Confidence 34444455578899999999999999988863 46999999998 9999999887653 236899999999988765 5
Q ss_pred CccEEEecccccCCCCH--HHHHHHHHHhhcCCCeeEEEEe
Q 020988 237 FVDAVHAGAALHCWPSP--SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~--~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+||+|++..+++|+.+. ...+.++.++||| +|.+++
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 89999998888887554 2344455555555 455544
No 193
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.29 E-value=1.2e-12 Score=109.02 Aligned_cols=87 Identities=8% Similarity=0.019 Sum_probs=76.1
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC---CCCCcc
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVD 239 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD 239 (319)
...++.+|||||||. +++|+|+.|++.|+++.. .+++++++|+.++++ ++++||
T Consensus 9 g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~fD 65 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSFD 65 (176)
T ss_dssp TCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred CCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCEe
Confidence 456789999999996 239999999999999863 258999999999887 788999
Q ss_pred EEEecccccCC-CCHHHHHHHHHHhhcCCCeeEE
Q 020988 240 AVHAGAALHCW-PSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 240 ~V~~~~vl~h~-~d~~~~l~el~rvlk~g~~~g~ 272 (319)
+|++..+++|+ +++..++++++|+|||||.+.+
T Consensus 66 ~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 66 IILSGLVPGSTTLHSAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp EEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECChhhhcccCHHHHHHHHHHHCCCCEEEEE
Confidence 99999999999 9999999999999999876655
No 194
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.29 E-value=4e-11 Score=111.25 Aligned_cols=110 Identities=11% Similarity=0.140 Sum_probs=90.9
Q ss_pred HHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCcc
Q 020988 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD 239 (319)
+.+......+|||||||+|.++..+++..|..+++..|. +.+++.|+++.... ...+++++.+|+.+.|.+ .+|
T Consensus 173 ~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~---~~~rv~~~~gD~~~~~~~--~~D 246 (353)
T 4a6d_A 173 TAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ---EEEQIDFQEGDFFKDPLP--EAD 246 (353)
T ss_dssp HSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC--CCS
T ss_pred HhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc---ccCceeeecCccccCCCC--Cce
Confidence 333445678999999999999999999999889999998 88999999887543 357899999999876654 579
Q ss_pred EEEecccccCCCCHH--HHHHHHHHhhcCCCeeEEEEe
Q 020988 240 AVHAGAALHCWPSPS--NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 240 ~V~~~~vl~h~~d~~--~~l~el~rvlk~g~~~g~~~~ 275 (319)
+|++.++||+++|.. +.+++++++++|+|..-++..
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 999999999998874 668999999999987665543
No 195
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.28 E-value=1.4e-11 Score=109.06 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=81.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.++++...++ .. +++..+|+.+. +++++||+|+++
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~---~~-v~~~~~d~~~~-~~~~~fD~Vv~n 191 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNG---VR-PRFLEGSLEAA-LPFGPFDLLVAN 191 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTT---CC-CEEEESCHHHH-GGGCCEEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC---Cc-EEEEECChhhc-CcCCCCCEEEEC
Confidence 5678999999999999999999877 99999999999999999987642 22 88999988662 345789999997
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
...++ ....++++.++++|+|...+..+
T Consensus 192 ~~~~~---~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 192 LYAEL---HAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp CCHHH---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcHHH---HHHHHHHHHHHcCCCCEEEEEee
Confidence 66554 35778888899888776555433
No 196
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.28 E-value=8.2e-12 Score=114.94 Aligned_cols=116 Identities=10% Similarity=0.077 Sum_probs=87.0
Q ss_pred HHHHHHHhh-ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCC-CeEEEEcCCCCCC
Q 020988 155 FKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP 232 (319)
Q Consensus 155 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp 232 (319)
.+.+.+.+. ..++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.|+++++..+ ... +++++++|+.++.
T Consensus 141 ~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~g--l~~~~v~~i~~D~~~~l 216 (332)
T 2igt_A 141 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFI 216 (332)
T ss_dssp HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECcHHHHH
Confidence 344555553 34578999999999999999999876 99999999999999999987653 112 4899999987643
Q ss_pred C----CCCCccEEEecc----------cccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 233 F----ASGFVDAVHAGA----------ALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 233 ~----~~~~fD~V~~~~----------vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
. .+++||+|++.- ++++..+...+++++.++|+|+|.+.+..
T Consensus 217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 272 (332)
T ss_dssp HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 1 146899999942 22334456678888999999998754443
No 197
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.27 E-value=6.1e-12 Score=114.43 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=81.3
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc-CccCCCCeEEEEcCCCCCCC--CCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPF--ASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~--~~~~fD~V 241 (319)
.++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++... .....++++++.+|+.+.+. .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4678999999999999999998755669999999999999999987421 01124689999999877643 36899999
Q ss_pred EecccccCCCCH----HHHHHHHHHhhcCCCeeEEE
Q 020988 242 HAGAALHCWPSP----SNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 242 ~~~~vl~h~~d~----~~~l~el~rvlk~g~~~g~~ 273 (319)
++.....+.+.. ..+++++.++|+|+|.+.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 209 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ 209 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 997655543332 57788999998887765544
No 198
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.27 E-value=1.4e-11 Score=107.87 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
.....+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+ ...++.++.+|+.+.
T Consensus 47 ~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~ 124 (239)
T 2hnk_A 47 EEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--LENKIFLKLGSALET 124 (239)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHH
Confidence 3345566666666789999999999999999998854 5699999999999999999987643 123599999987552
Q ss_pred -C--------------CCC--CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 232 -P--------------FAS--GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 232 -p--------------~~~--~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
+ +++ ++||+|++....+ +....++++.++|+|+|...
T Consensus 125 ~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv 178 (239)
T 2hnk_A 125 LQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLI 178 (239)
T ss_dssp HHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHhhcccccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEE
Confidence 2 222 7899999986544 44577888888887765444
No 199
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=99.26 E-value=1.8e-11 Score=114.40 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
......+.... ..++.+|||+|||+|.++..++..+...+|+|+|+|+.+++.|++++...+ ...+++++++|+.++
T Consensus 204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g--l~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG--VLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT--CGGGCEEEECCGGGG
T ss_pred HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhhC
Confidence 33445555555 677899999999999999999998766689999999999999999987753 225799999999999
Q ss_pred CCCCCCccEEEecccccCC----CCH----HHHHHHHHHhh
Q 020988 232 PFASGFVDAVHAGAALHCW----PSP----SNAASVFSSSY 264 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~----~d~----~~~l~el~rvl 264 (319)
++++++||+|+++..+..- .+. ..+++++.+++
T Consensus 281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 8878899999997543321 112 45567777776
No 200
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.26 E-value=7.9e-12 Score=112.46 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=73.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE-EcCCCCCC---CCCCCccE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP---FASGFVDA 240 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp---~~~~~fD~ 240 (319)
.++.+|||||||||.++..+++.+ ..+|+|+|+|++|++.+.++ ..++... ..++..++ ++..+||+
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~~~~l~~~~fD~ 154 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAEPVDFTEGLPSF 154 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCCGGGCTTCCCSE
T ss_pred ccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh--------CcccceecccCceecchhhCCCCCCCE
Confidence 467799999999999999998885 35899999999999986543 1233322 23444333 33456999
Q ss_pred EEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 241 VHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
|++..+++++ ..++.++.|+|+|+|.+-++
T Consensus 155 v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 155 ASIDVSFISL---NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp EEECCSSSCG---GGTHHHHHHHSCTTCEEEEE
T ss_pred EEEEeeHhhH---HHHHHHHHHHcCcCCEEEEE
Confidence 9998887754 67899999999999988776
No 201
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.25 E-value=8.7e-11 Score=109.78 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=86.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCC-CCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~V~ 242 (319)
.++.+|||+| |+|.++..+++.++..+|+|+|+|+.+++.|+++++..+ ..+++++.+|+.+ +|. .+++||+|+
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG---YEDIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT---CCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCEEEEEChhhhhchhhccCCccEEE
Confidence 3678999999 999999999988776799999999999999999988753 2379999999988 764 356899999
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+...+++. ....+++++.++|||+|...++.+
T Consensus 247 ~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 247 TDPPETLE-AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp ECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred ECCCCchH-HHHHHHHHHHHHcccCCeEEEEEE
Confidence 98655433 246788999999999985444444
No 202
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.25 E-value=1.9e-11 Score=106.60 Aligned_cols=113 Identities=9% Similarity=0.010 Sum_probs=83.8
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC---
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--- 230 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~--- 230 (319)
.+.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+ ...+++++.+|+.+
T Consensus 61 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~l~ 138 (232)
T 3cbg_A 61 AQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG--VAEKISLRLGPALATLE 138 (232)
T ss_dssp HHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHH
Confidence 34444445555678999999999999999998754 5699999999999999999887643 22469999999744
Q ss_pred -CCCCC--CCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 231 -LPFAS--GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 231 -lp~~~--~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++..+ ++||+|++.... .+....++++.++|+|+| .+++
T Consensus 139 ~l~~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpgG---~lv~ 180 (232)
T 3cbg_A 139 QLTQGKPLPEFDLIFIDADK---RNYPRYYEIGLNLLRRGG---LMVI 180 (232)
T ss_dssp HHHTSSSCCCEEEEEECSCG---GGHHHHHHHHHHTEEEEE---EEEE
T ss_pred HHHhcCCCCCcCEEEECCCH---HHHHHHHHHHHHHcCCCe---EEEE
Confidence 33333 789999987552 345677788877777654 5555
No 203
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.25 E-value=6e-11 Score=113.63 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=87.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
....+...+...++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++++..+ ..++.++.+|+..++
T Consensus 247 ~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~ 323 (450)
T 2yxl_A 247 ASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG---IKIVKPLVKDARKAP 323 (450)
T ss_dssp HHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCTTCCS
T ss_pred hhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEEEcChhhcc
Confidence 3445556677788899999999999999999987544 699999999999999999987753 457999999998876
Q ss_pred --CCCCCccEEEe------cccccCCCCH----------------HHHHHHHHHhhcCCCeeE
Q 020988 233 --FASGFVDAVHA------GAALHCWPSP----------------SNAASVFSSSYSLLSICY 271 (319)
Q Consensus 233 --~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~el~rvlk~g~~~g 271 (319)
+.+++||+|++ .+++++.++. ...++++.++|||||.+.
T Consensus 324 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 386 (450)
T 2yxl_A 324 EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLL 386 (450)
T ss_dssp SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 55578999996 3466666554 345566666665554433
No 204
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.24 E-value=2.3e-11 Score=105.36 Aligned_cols=111 Identities=12% Similarity=-0.010 Sum_probs=84.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p 232 (319)
...+.......++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+ ...+++++.+|+.+. +
T Consensus 58 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~~~ 135 (229)
T 2avd_A 58 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALETLD 135 (229)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCCeEEEEEcCHHHHHH
Confidence 44555555556788999999999999999998754 5699999999999999999987653 235899999998553 1
Q ss_pred -CCC----CCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 233 -FAS----GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 233 -~~~----~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
+.+ ++||+|++... ..+....++++.++++|+|..
T Consensus 136 ~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~l 175 (229)
T 2avd_A 136 ELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGIL 175 (229)
T ss_dssp HHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEE
T ss_pred HHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEE
Confidence 211 68999999654 335567788888888776543
No 205
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.24 E-value=2.1e-10 Score=97.75 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=76.1
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.+++++...+ .+++++.+|+.+++ ++||+|++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~---~~~D~v~~ 118 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFK----GKFKVFIGDVSEFN---SRVDIVIM 118 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGT----TSEEEEESCGGGCC---CCCSEEEE
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcC----CCEEEEECchHHcC---CCCCEEEE
Confidence 45688999999999999999998853 479999999999999999987642 27999999998875 48999999
Q ss_pred cccccCCCC--HHHHHHHHHHhh
Q 020988 244 GAALHCWPS--PSNAASVFSSSY 264 (319)
Q Consensus 244 ~~vl~h~~d--~~~~l~el~rvl 264 (319)
...+++... ....++++.+++
T Consensus 119 ~~p~~~~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 119 NPPFGSQRKHADRPFLLKAFEIS 141 (207)
T ss_dssp CCCCSSSSTTTTHHHHHHHHHHC
T ss_pred cCCCccccCCchHHHHHHHHHhc
Confidence 887776642 345677777776
No 206
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.24 E-value=1.8e-12 Score=113.43 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=67.2
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE-cCCCCCCCCCCCccEEE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH 242 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~ 242 (319)
..++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.++++..........++.+.. .|+.. ..||.+.
T Consensus 35 ~~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~~ 108 (232)
T 3opn_A 35 EINGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-----GRPSFTS 108 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-----CCCSEEE
T ss_pred CCCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-----CCCCEEE
Confidence 34567999999999999999998853 49999999999999987753221000001222222 22221 1244444
Q ss_pred ecccccCCCCHHHHHHHHHHhhcCCCeeEEEE
Q 020988 243 AGAALHCWPSPSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 243 ~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~ 274 (319)
+..++.++ ..+++++.|+|||+|.+.+++
T Consensus 109 ~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 109 IDVSFISL---DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp ECCSSSCG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred EEEEhhhH---HHHHHHHHHhccCCCEEEEEE
Confidence 44444443 678999999999999887754
No 207
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.24 E-value=1.2e-11 Score=110.73 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=85.3
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC--
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-- 233 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-- 233 (319)
.+...+...++.+|||+|||+|..+..+++..++ .+|+|+|+++.+++.++++++..+ ..++.++.+|+.+++.
T Consensus 74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~~~~ 150 (274)
T 3ajd_A 74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG---VLNTIIINADMRKYKDYL 150 (274)
T ss_dssp HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCHHHHHHHH
T ss_pred HHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC---CCcEEEEeCChHhcchhh
Confidence 3445566778899999999999999999986433 699999999999999999987753 3489999999987654
Q ss_pred --CCCCccEEEec------cccc------------CCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 234 --ASGFVDAVHAG------AALH------------CWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 234 --~~~~fD~V~~~------~vl~------------h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
..++||+|++. +++. +.......++++.++|||||....
T Consensus 151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 209 (274)
T 3ajd_A 151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVY 209 (274)
T ss_dssp HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEE
T ss_pred hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 25789999986 2322 113456778888888877665443
No 208
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.24 E-value=4e-12 Score=114.01 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=76.7
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE--EcCCCCCCCCCCCccEE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV--RADVCRLPFASGFVDAV 241 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~--~~d~~~lp~~~~~fD~V 241 (319)
..++.+|||||||+|.++..+++. . +|+|+|+++ |+..++++.... .....++.++ ++|+.++| +++||+|
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~-~--~V~gVD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~--~~~fD~V 152 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ-P--NVREVKAYT-LGTSGHEKPRLV-ETFGWNLITFKSKVDVTKME--PFQADTV 152 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS-T--TEEEEEEEC-CCCTTSCCCCCC-CCTTGGGEEEECSCCGGGCC--CCCCSEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc-C--CEEEEECch-hhhhhhhchhhh-hhcCCCeEEEeccCcHhhCC--CCCcCEE
Confidence 357889999999999999999987 3 899999998 543332211000 0001278999 99998876 6799999
Q ss_pred EecccccCCCCHH-------HHHHHHHHhhcCCC--eeEEEEee
Q 020988 242 HAGAALHCWPSPS-------NAASVFSSSYSLLS--ICYLLQFR 276 (319)
Q Consensus 242 ~~~~vl~h~~d~~-------~~l~el~rvlk~g~--~~g~~~~~ 276 (319)
++..+ ++..++. .+++++.++|||+| .+.+-+|.
T Consensus 153 vsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 153 LCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 99877 5554432 36888999999999 77766665
No 209
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.23 E-value=5.5e-12 Score=112.48 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=76.2
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE--EcCCCCCCCCCCCccEE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV--RADVCRLPFASGFVDAV 241 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~--~~d~~~lp~~~~~fD~V 241 (319)
..++.+|||||||+|.++..+++. .+|+|+|+++ ++..++++.... .....++.++ ++|+.+++ +++||+|
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~--~~~fD~V 144 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRIT-ESYGWNIVKFKSRVDIHTLP--VERTDVI 144 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCC-CBTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhh-hccCCCeEEEecccCHhHCC--CCCCcEE
Confidence 457889999999999999999887 3899999998 533222110000 0001168899 99999887 6799999
Q ss_pred EecccccCCCCHH-------HHHHHHHHhhcCCC--eeEEEEee
Q 020988 242 HAGAALHCWPSPS-------NAASVFSSSYSLLS--ICYLLQFR 276 (319)
Q Consensus 242 ~~~~vl~h~~d~~-------~~l~el~rvlk~g~--~~g~~~~~ 276 (319)
++..+ ++..++. .+++++.++|||+| .+.+-+|.
T Consensus 145 ~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 145 MCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 99877 6555532 36888999999999 76666665
No 210
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.23 E-value=3e-11 Score=109.28 Aligned_cols=110 Identities=12% Similarity=0.150 Sum_probs=79.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCCCC-CCCCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRL-PFASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~~l-p~~~~~fD~V 241 (319)
.++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...+. ...++++++.+|+.+. +..+++||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 457899999999999999999886567899999999999999998765311 1246899999998764 3446799999
Q ss_pred EecccccCCCCH----HHHHHHHHHhhcCCCeeEEEE
Q 020988 242 HAGAALHCWPSP----SNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 242 ~~~~vl~h~~d~----~~~l~el~rvlk~g~~~g~~~ 274 (319)
++...-...+.. ..+++++.++|+|+|.+....
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 995433222211 567888888888877655443
No 211
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=99.23 E-value=1e-11 Score=109.44 Aligned_cols=107 Identities=7% Similarity=0.123 Sum_probs=77.9
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++.. ..+++++.+|+.+++++
T Consensus 19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCCCC
T ss_pred HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHhCCcc
Confidence 34555556666788999999999999999999875 999999999999999998753 25899999999998876
Q ss_pred C-CCccEEEec-----------ccccCCCCHHHHH----HHHHHhhcCCCe
Q 020988 235 S-GFVDAVHAG-----------AALHCWPSPSNAA----SVFSSSYSLLSI 269 (319)
Q Consensus 235 ~-~~fD~V~~~-----------~vl~h~~d~~~~l----~el~rvlk~g~~ 269 (319)
+ ..|+ |+++ ..++|...+...+ +.+.|+++++|.
T Consensus 92 ~~~~~~-vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~ 141 (244)
T 1qam_A 92 KNQSYK-IFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRS 141 (244)
T ss_dssp SSCCCE-EEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSH
T ss_pred cCCCeE-EEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcc
Confidence 4 4564 4443 2333433333333 336677776653
No 212
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.22 E-value=2.1e-11 Score=103.37 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=74.6
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC---------
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--------- 234 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--------- 234 (319)
..++.+|||+|||+|.++..+++.+ .+|+|+|+++.. ...++.++++|+.+.+..
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~--------------~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEME--------------EIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCC--------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccc--------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 3578999999999999999999884 499999999741 135899999999886521
Q ss_pred --CCCccEEEecccccCCC----C-------HHHHHHHHHHhhcCCCeeEEEEeeccc
Q 020988 235 --SGFVDAVHAGAALHCWP----S-------PSNAASVFSSSYSLLSICYLLQFRYTK 279 (319)
Q Consensus 235 --~~~fD~V~~~~vl~h~~----d-------~~~~l~el~rvlk~g~~~g~~~~~~~~ 279 (319)
.++||+|++........ | ...+++++.++|||||.+.+.+|....
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 14899999965432221 1 235677888899998888877774443
No 213
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=99.21 E-value=6.7e-11 Score=106.85 Aligned_cols=87 Identities=13% Similarity=0.231 Sum_probs=74.8
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++.. ..+++++.+|+.++++
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTTSCG
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhhCCc
Confidence 345666677777889999999999999999999865 999999999999999998864 3689999999999988
Q ss_pred CCCCccEEEecccc
Q 020988 234 ASGFVDAVHAGAAL 247 (319)
Q Consensus 234 ~~~~fD~V~~~~vl 247 (319)
++.+||+|+++...
T Consensus 111 ~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 111 NKLDFNKVVANLPY 124 (295)
T ss_dssp GGSCCSEEEEECCG
T ss_pred ccCCccEEEEeCcc
Confidence 87889999987443
No 214
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.20 E-value=4e-11 Score=104.23 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=79.3
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+ ...++++..+|..+...+++.||+|++.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g--l~~~I~~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG--LTSKIDVRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccccccccCEEEEe
Confidence 35789999999999999999999877789999999999999999998764 3457999999998766544579999876
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++.-.+ ....+.+..+.+++++ .++.
T Consensus 98 GmGg~l--I~~IL~~~~~~l~~~~---~lIl 123 (230)
T 3lec_A 98 GMGGRL--IADILNNDIDKLQHVK---TLVL 123 (230)
T ss_dssp EECHHH--HHHHHHHTGGGGTTCC---EEEE
T ss_pred CCchHH--HHHHHHHHHHHhCcCC---EEEE
Confidence 554321 2344555555655544 4554
No 215
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.19 E-value=8.6e-11 Score=106.89 Aligned_cols=105 Identities=9% Similarity=0.031 Sum_probs=81.8
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEEec
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAG 244 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~ 244 (319)
..+|||||||+|.++..+++..+..+++++|+++.+++.|++++... ..++++++.+|+.+. .+.+++||+|++.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 166 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP---RAPRVKIRVDDARMVAESFTPASRDVIIRD 166 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC---CTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc---CCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence 34999999999999999999767779999999999999999987532 246899999998764 3446799999985
Q ss_pred cccc-----CCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALH-----CWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~-----h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.... |+. ...++++++++|+++|.+.+...
T Consensus 167 ~~~~~~~~~~L~-t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 167 VFAGAITPQNFT-TVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CSTTSCCCGGGS-BHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccchhhh-HHHHHHHHHHhcCCCcEEEEEec
Confidence 4322 221 25788999999988876654443
No 216
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.19 E-value=1.7e-11 Score=114.20 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=74.1
Q ss_pred CCCeEEEEcCC------cChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC----
Q 020988 166 QGGLLVDVSCG------SGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---- 234 (319)
Q Consensus 166 ~~~~VLDiGcG------~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---- 234 (319)
++.+||||||| +|..+..+++. .+..+|+|+|+|+.|. . ...+++++++|+.++|+.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~------~~~rI~fv~GDa~dlpf~~~l~ 283 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V------DELRIRTIQGDQNDAEFLDRIA 283 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G------CBTTEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h------cCCCcEEEEecccccchhhhhh
Confidence 56899999999 66666666554 5677999999999973 1 136899999999998876
Q ss_pred --CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 235 --SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+++||+|++.. .+++.+....++++.++|||||.+.+.
T Consensus 284 ~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 284 RRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEE
Confidence 68999999864 466667788888888888877654443
No 217
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.19 E-value=5.6e-11 Score=104.09 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=84.7
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p 232 (319)
...+..++...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|+++++..+ ...+++++.+|+.+. +
T Consensus 59 ~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~ 136 (237)
T 3c3y_A 59 GQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG--VEHKINFIESDAMLALD 136 (237)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHH
Confidence 34444445556778999999999999999998854 5799999999999999999987653 234799999998653 2
Q ss_pred -C-----CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 233 -F-----ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 233 -~-----~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+ .+++||+|++...- .+....++++.++|+||| .+++
T Consensus 137 ~l~~~~~~~~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG---~lv~ 179 (237)
T 3c3y_A 137 NLLQGQESEGSYDFGFVDADK---PNYIKYHERLMKLVKVGG---IVAY 179 (237)
T ss_dssp HHHHSTTCTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEE---EEEE
T ss_pred HHHhccCCCCCcCEEEECCch---HHHHHHHHHHHHhcCCCe---EEEE
Confidence 2 15789999986432 245667788888877665 4544
No 218
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.18 E-value=1.1e-10 Score=111.14 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l 231 (319)
+.....+...+...++.+|||+|||+|..+..+++.+++.+|+++|+++.+++.++++++..+ .++.++.+|+..+
T Consensus 232 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g----~~~~~~~~D~~~~ 307 (429)
T 1sqg_A 232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYP 307 (429)
T ss_dssp CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCT
T ss_pred CHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC----CCeEEEeCchhhc
Confidence 334455666777788999999999999999999998766799999999999999999987753 3578999999887
Q ss_pred C--CCCCCccEEEe------cccccCCCCH
Q 020988 232 P--FASGFVDAVHA------GAALHCWPSP 253 (319)
Q Consensus 232 p--~~~~~fD~V~~------~~vl~h~~d~ 253 (319)
+ +.+++||+|++ .+++.+.++.
T Consensus 308 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~ 337 (429)
T 1sqg_A 308 SQWCGEQQFDRILLDAPCSATGVIRRHPDI 337 (429)
T ss_dssp HHHHTTCCEEEEEEECCCCCGGGTTTCTTH
T ss_pred hhhcccCCCCEEEEeCCCCcccccCCCcch
Confidence 6 55678999996 3466666653
No 219
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.18 E-value=5.1e-11 Score=104.37 Aligned_cols=104 Identities=9% Similarity=0.039 Sum_probs=77.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..+ ...++.+..+|..+...++.+||+|++.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~I~v~~gD~l~~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG--LTEQIDVRKGNGLAVIEKKDAIDTIVIA 97 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEecchhhccCccccccEEEEe
Confidence 35789999999999999999999876789999999999999999998764 2356999999988765444469999876
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++.-.+ ....+.+..+.++++ +.++.
T Consensus 98 gmGg~l--I~~IL~~~~~~L~~~---~~lIl 123 (244)
T 3gnl_A 98 GMGGTL--IRTILEEGAAKLAGV---TKLIL 123 (244)
T ss_dssp EECHHH--HHHHHHHTGGGGTTC---CEEEE
T ss_pred CCchHH--HHHHHHHHHHHhCCC---CEEEE
Confidence 543311 234455555566543 44444
No 220
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.18 E-value=5.9e-11 Score=109.20 Aligned_cols=108 Identities=12% Similarity=0.087 Sum_probs=79.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCCC--CCCCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL--PFASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~l--p~~~~~fD~V 241 (319)
.++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...+. ....+++++.+|+.+. ...+++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 456899999999999999999876567999999999999999998764200 0136899999998653 2345789999
Q ss_pred Eeccc--ccCCCC--HHHHHHHHHHhhcCCCeeEE
Q 020988 242 HAGAA--LHCWPS--PSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 242 ~~~~v--l~h~~d--~~~~l~el~rvlk~g~~~g~ 272 (319)
++... +++..+ ...+++++.++|+|+|.+.+
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 233 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT 233 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 98543 111111 35778888888887664443
No 221
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.17 E-value=6.2e-11 Score=99.95 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=73.7
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCC---------CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE-EcCCCCCC-
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP- 232 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~---------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp- 232 (319)
..++.+|||||||+|.++..+++..+. .+|+|+|+|+.. ...+++++ .+|+...+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGATFLCPADVTDPRT 85 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTCEEECSCCTTSHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCCeEEEeccCCCHHH
Confidence 356889999999999999999988432 689999999831 12478889 89987653
Q ss_pred -------CCCCCccEEEecccccCC----CCH-------HHHHHHHHHhhcCCCeeEEEEee
Q 020988 233 -------FASGFVDAVHAGAALHCW----PSP-------SNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 233 -------~~~~~fD~V~~~~vl~h~----~d~-------~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+++++||+|++..+++.. .+. ..+++++.++|||+|.+.+..+.
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 335689999997655432 233 36788888998888776665553
No 222
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.17 E-value=7.4e-11 Score=107.74 Aligned_cols=109 Identities=13% Similarity=0.040 Sum_probs=82.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc--cCCCCeEEEEcCCCC-CCCCCCCccEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCR-LPFASGFVDAV 241 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~i~~~~~d~~~-lp~~~~~fD~V 241 (319)
.++.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++...+. ...++++++.+|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 456899999999999999999875566999999999999999998754110 114689999999876 34446789999
Q ss_pred EecccccC-CCC------HHHHHHHHHHhhcCCCeeEEE
Q 020988 242 HAGAALHC-WPS------PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 242 ~~~~vl~h-~~d------~~~~l~el~rvlk~g~~~g~~ 273 (319)
++....++ ... ...+++++.++|+|+|.+.+.
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 99765443 111 257788888888887765544
No 223
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=99.17 E-value=1.2e-10 Score=105.55 Aligned_cols=88 Identities=16% Similarity=0.267 Sum_probs=68.6
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...+ ..+++++.+|+..+++
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~---~~~v~~~~~D~~~~~~ 104 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEG---YNNLEVYEGDAIKTVF 104 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTT---CCCEEC----CCSSCC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECchhhCCc
Confidence 345566667667889999999999999999998865 99999999999999999886532 3689999999998876
Q ss_pred CCCCccEEEeccccc
Q 020988 234 ASGFVDAVHAGAALH 248 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~ 248 (319)
. +||+|+++...+
T Consensus 105 ~--~~D~Vv~n~py~ 117 (299)
T 2h1r_A 105 P--KFDVCTANIPYK 117 (299)
T ss_dssp C--CCSEEEEECCGG
T ss_pred c--cCCEEEEcCCcc
Confidence 3 899999865443
No 224
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.15 E-value=6.4e-11 Score=106.56 Aligned_cols=108 Identities=11% Similarity=0.108 Sum_probs=80.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-CCCCeEEEEcCCCCC-CCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCRL-PFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~i~~~~~d~~~l-p~~~~~fD~V~ 242 (319)
.++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...+.. ..++++++.+|+.+. +..+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998766679999999999999999987542110 146899999998663 32357899999
Q ss_pred ecccccCCCCH----HHHHHHHHHhhcCCCeeEE
Q 020988 243 AGAALHCWPSP----SNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 243 ~~~vl~h~~d~----~~~l~el~rvlk~g~~~g~ 272 (319)
+.....+.+.. ..+++++.++|+|+|...+
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~ 190 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 190 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 85433222111 5778888888887665443
No 225
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.15 E-value=5.7e-11 Score=108.43 Aligned_cols=106 Identities=12% Similarity=0.073 Sum_probs=76.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc-CCCCeEEEEcCCCC-CCCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCR-LPFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~i~~~~~d~~~-lp~~~~~fD~V~ 242 (319)
..+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...+.. ..++++++.+|+.+ ++..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999998765679999999999999999987542101 14689999999866 333467899999
Q ss_pred ecccccCCCCH-----HHHHHHHHHhhcCCCeeE
Q 020988 243 AGAALHCWPSP-----SNAASVFSSSYSLLSICY 271 (319)
Q Consensus 243 ~~~vl~h~~d~-----~~~l~el~rvlk~g~~~g 271 (319)
+... +++... ..+++++.++|+|+|...
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv 219 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILS 219 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEE
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEE
Confidence 8543 332211 466777888877765443
No 226
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.15 E-value=6e-11 Score=107.82 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=79.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCC-CCCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCR-LPFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~-lp~~~~~fD~V~ 242 (319)
.++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++.... ....++++++.+|+.+ ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999988666799999999999999999875410 0014689999999865 344467899999
Q ss_pred ecccccCCC----CHHHHHHHHHHhhcCCCeeEEE
Q 020988 243 AGAALHCWP----SPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 243 ~~~vl~h~~----d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+....+..+ ....+++++.++|+|+|.+.+-
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 208 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 208 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence 854332211 1235688888888877655443
No 227
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.14 E-value=9.3e-11 Score=106.18 Aligned_cols=107 Identities=8% Similarity=0.023 Sum_probs=78.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCC-CCCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCR-LPFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~-lp~~~~~fD~V~ 242 (319)
..+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...+ ....++++++.+|+.+ ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 35689999999999999999987555799999999999999999875310 0114689999999865 344457899999
Q ss_pred ecccccC-CC-----CHHHHHHHHHHhhcCCCeeEE
Q 020988 243 AGAALHC-WP-----SPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 243 ~~~vl~h-~~-----d~~~~l~el~rvlk~g~~~g~ 272 (319)
+... .+ +. ....+++++.++|+|+|.+.+
T Consensus 169 ~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 203 (296)
T 1inl_A 169 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSA 203 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred EcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 8432 22 21 125678888888887665444
No 228
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.14 E-value=9.8e-11 Score=104.92 Aligned_cols=108 Identities=10% Similarity=0.076 Sum_probs=80.5
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCC-CCCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCR-LPFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~-lp~~~~~fD~V~ 242 (319)
..+.+|||||||+|.++..+++..+..+|+++|+++.+++.|++++...+ ....++++++.+|+.+ ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35789999999999999999987445699999999999999999875311 0124689999999866 343457899999
Q ss_pred ecccccCCCC----HHHHHHHHHHhhcCCCeeEE
Q 020988 243 AGAALHCWPS----PSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 243 ~~~vl~h~~d----~~~~l~el~rvlk~g~~~g~ 272 (319)
+.....+.+. ...+++++.++|+|+|.+..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~ 187 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 9543322111 25778889999887765543
No 229
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=99.13 E-value=2.4e-10 Score=105.55 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=93.2
Q ss_pred CCCCcHHHHHHHHHHh----hccCCCeEEEEcCCcChHHHHHHhhCCC-----CeEEEEeCCHHHHHHHHHHHhhcCccC
Q 020988 147 GFPGPDEEFKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKSGTY-----SGVVALDFSENMLRQCYDFIKQDNTIL 217 (319)
Q Consensus 147 ~~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~~~~l~~~g~~-----~~v~gvD~s~~~l~~a~~~~~~~~~~~ 217 (319)
.++.|....+.+...+ ...++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.++...+
T Consensus 107 ~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g--- 183 (344)
T 2f8l_A 107 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR--- 183 (344)
T ss_dssp GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT---
T ss_pred cCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC---
Confidence 3667777665554444 3346789999999999999988877532 589999999999999999886542
Q ss_pred CCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCHH------------------HHHHHHHHhhcCCCeeEEEEe
Q 020988 218 TSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS------------------NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 218 ~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~------------------~~l~el~rvlk~g~~~g~~~~ 275 (319)
.++.++.+|..... ..++||+|+++-.+.++++.+ ..++++.+.|+++|..++++.
T Consensus 184 -~~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 184 -QKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp -CCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -CCceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 26889999986633 457899999998776654432 467788888888777666663
No 230
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.13 E-value=1.5e-10 Score=100.28 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=77.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHA 243 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~ 243 (319)
.++.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++.++ ...++++..+|..+ ++. ..+||+|++
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~i~~~~~d~l~~l~~-~~~~D~Ivi 90 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG--LKEKIQVRLANGLAAFEE-TDQVSVITI 90 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-GGCCCEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECchhhhccc-CcCCCEEEE
Confidence 35789999999999999999999877789999999999999999998864 23479999999853 432 236999987
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
.++--.+ ....+.+....++++ +.++.
T Consensus 91 aG~Gg~~--i~~Il~~~~~~L~~~---~~lVl 117 (225)
T 3kr9_A 91 AGMGGRL--IARILEEGLGKLANV---ERLIL 117 (225)
T ss_dssp EEECHHH--HHHHHHHTGGGCTTC---CEEEE
T ss_pred cCCChHH--HHHHHHHHHHHhCCC---CEEEE
Confidence 6542211 234556666666654 44555
No 231
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.13 E-value=1e-10 Score=107.18 Aligned_cols=108 Identities=10% Similarity=0.104 Sum_probs=80.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-cCCCCeEEEEcCCCCC-CCCCCCccEEE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASGFVDAVH 242 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~fD~V~ 242 (319)
.++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++..... ...++++++.+|+.+. +..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 456899999999999999999875567999999999999999998764100 0136899999998652 33357899999
Q ss_pred ecccccCCC---C--HHHHHHHHHHhhcCCCeeEEE
Q 020988 243 AGAALHCWP---S--PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 243 ~~~vl~h~~---d--~~~~l~el~rvlk~g~~~g~~ 273 (319)
+... +++. + ...+++++.++|+|+|.....
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 8542 2221 1 157788888888877655543
No 232
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=99.12 E-value=3.4e-10 Score=108.97 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=84.9
Q ss_pred HHHHHHhhcc--CCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 156 ~~l~~~l~~~--~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
..+...+... ++.+|||+|||+|..+..+++... ...|+++|+|+.+++.++++++..+ ..++.++.+|+..++
T Consensus 105 ~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g---~~nv~~~~~D~~~~~ 181 (479)
T 2frx_A 105 MLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG---ISNVALTHFDGRVFG 181 (479)
T ss_dssp HHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCCSTTHH
T ss_pred HHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHhh
Confidence 3444556666 889999999999999999998742 4689999999999999999988753 457999999998876
Q ss_pred C-CCCCccEEEec------ccccCCCCH----------------HHHHHHHHHhhcCCCeeE
Q 020988 233 F-ASGFVDAVHAG------AALHCWPSP----------------SNAASVFSSSYSLLSICY 271 (319)
Q Consensus 233 ~-~~~~fD~V~~~------~vl~h~~d~----------------~~~l~el~rvlk~g~~~g 271 (319)
. .+++||+|++. +++.+.++. ...++++.++|||||.+.
T Consensus 182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lv 243 (479)
T 2frx_A 182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLV 243 (479)
T ss_dssp HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 3 45789999972 345444431 245667777777665443
No 233
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=99.11 E-value=2.6e-10 Score=108.65 Aligned_cols=86 Identities=17% Similarity=0.284 Sum_probs=70.8
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC----
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---- 230 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~---- 230 (319)
.+.+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++.++ ..++.++.+|+.+
T Consensus 275 ~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~f~~~d~~~~l~~ 349 (433)
T 1uwv_A 275 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEEDVTK 349 (433)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSCCSS
T ss_pred HHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEECCHHHHhhh
Confidence 44555556666788999999999999999998854 99999999999999999987653 3489999999987
Q ss_pred CCCCCCCccEEEecc
Q 020988 231 LPFASGFVDAVHAGA 245 (319)
Q Consensus 231 lp~~~~~fD~V~~~~ 245 (319)
+++.+++||+|++.-
T Consensus 350 ~~~~~~~fD~Vv~dP 364 (433)
T 1uwv_A 350 QPWAKNGFDKVLLDP 364 (433)
T ss_dssp SGGGTTCCSEEEECC
T ss_pred hhhhcCCCCEEEECC
Confidence 345667899999853
No 234
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.10 E-value=1.4e-10 Score=100.85 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=69.1
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|.++..+. +..+|+|+|+|+.+++.+++++... ..+..+..+|....+.+ ++||+|++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~----g~~~~~~v~D~~~~~~~-~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK----DWDFTFALQDVLCAPPA-EAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT----TCEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeecccCCCC-CCcchHHHH
Confidence 567899999999999998877 4569999999999999999998664 46788999999888765 599999999
Q ss_pred ccccCCCCH
Q 020988 245 AALHCWPSP 253 (319)
Q Consensus 245 ~vl~h~~d~ 253 (319)
-++||+.+.
T Consensus 176 k~lh~LE~q 184 (253)
T 3frh_A 176 KLLPLLERE 184 (253)
T ss_dssp SCHHHHHHH
T ss_pred HHHHHhhhh
Confidence 888887543
No 235
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=99.10 E-value=1.9e-12 Score=114.01 Aligned_cols=109 Identities=10% Similarity=0.208 Sum_probs=82.2
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++... ..+++++.+|+.++++++
T Consensus 19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTCCC
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCccc
Confidence 4555666667788999999999999999999874 999999999999998876542 357999999999988763
Q ss_pred -CCccEEEecc-----------cccCCCCHHHHH----HHHHHhhcCCCeeEE
Q 020988 236 -GFVDAVHAGA-----------ALHCWPSPSNAA----SVFSSSYSLLSICYL 272 (319)
Q Consensus 236 -~~fD~V~~~~-----------vl~h~~d~~~~l----~el~rvlk~g~~~g~ 272 (319)
++| .|+++- .++|..+....+ +.+.|+++++|.+.+
T Consensus 92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 92 KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 678 565542 233333444445 668889988875443
No 236
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.09 E-value=4.3e-10 Score=99.57 Aligned_cols=83 Identities=12% Similarity=0.214 Sum_probs=69.0
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++.. ..+++++.+|+.++++
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTTCCG
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHhCCH
Confidence 345666777777889999999999999999999875 999999999999999998754 3589999999999876
Q ss_pred CC----CCccEEEec
Q 020988 234 AS----GFVDAVHAG 244 (319)
Q Consensus 234 ~~----~~fD~V~~~ 244 (319)
++ ++|| |+++
T Consensus 90 ~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGN 103 (255)
T ss_dssp GGSCCSSCEE-EEEE
T ss_pred HHhccCCCeE-EEec
Confidence 43 5688 5543
No 237
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=99.08 E-value=2.1e-10 Score=103.01 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=78.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc--------CCCCeEEEEcCCCCC-CCCC
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------LTSNLALVRADVCRL-PFAS 235 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------~~~~i~~~~~d~~~l-p~~~ 235 (319)
.++.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++ ..+.. ..++++++.+|+.+. +. +
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~ 150 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N 150 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence 45789999999999999999988 5679999999999999999987 32100 146899999997652 32 5
Q ss_pred CCccEEEecccccCCCC-----HHHHHHHHHHhhcCCCeeEEE
Q 020988 236 GFVDAVHAGAALHCWPS-----PSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d-----~~~~l~el~rvlk~g~~~g~~ 273 (319)
++||+|++.... ++.. ...+++++.++|+|+|...+.
T Consensus 151 ~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 151 RGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp CCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 789999986543 2211 256788888888877655443
No 238
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.07 E-value=3.5e-10 Score=106.45 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=78.7
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----CCCCccE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDA 240 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~ 240 (319)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++.++.. ..+++++.+|+.+... ..++||+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 467899999999999999999876 358999999999999999998775310 1279999999876521 1468999
Q ss_pred EEecc---------cccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 241 VHAGA---------ALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 241 V~~~~---------vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
|++.- +.++..+....+.++.++++|+|...
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 336 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILL 336 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEE
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 99963 22333455566777777777655433
No 239
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=99.06 E-value=1.5e-10 Score=110.71 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=69.2
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-C
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~ 233 (319)
..+...+...++.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.++++++..+ .. +.++.+|+.+++ .
T Consensus 91 ~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G---~~-v~~~~~Da~~l~~~ 166 (464)
T 3m6w_A 91 QAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG---AP-LAVTQAPPRALAEA 166 (464)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC---CC-CEEECSCHHHHHHH
T ss_pred HHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---Ce-EEEEECCHHHhhhh
Confidence 4455566777899999999999999999998743 3689999999999999999998763 33 889999988765 2
Q ss_pred CCCCccEEEe
Q 020988 234 ASGFVDAVHA 243 (319)
Q Consensus 234 ~~~~fD~V~~ 243 (319)
.+++||+|++
T Consensus 167 ~~~~FD~Il~ 176 (464)
T 3m6w_A 167 FGTYFHRVLL 176 (464)
T ss_dssp HCSCEEEEEE
T ss_pred ccccCCEEEE
Confidence 4579999995
No 240
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=99.06 E-value=2.3e-10 Score=101.77 Aligned_cols=98 Identities=7% Similarity=-0.086 Sum_probs=77.4
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcC-ccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..+.+|||||||+|.++..+++. + .+|+++|+++.+++.|++++.... ....++++++.+|..+.. ++||+|++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 35689999999999999999988 5 799999999999999998764310 012468999999988764 78999998
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
. ..+|..+++++.++|+|+|.+..
T Consensus 146 d-----~~dp~~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 146 L-----QEPDIHRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp S-----SCCCHHHHHHHHTTEEEEEEEEE
T ss_pred C-----CCChHHHHHHHHHhcCCCcEEEE
Confidence 6 45777788888888877765544
No 241
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.05 E-value=1.4e-09 Score=97.27 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=80.1
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||+|||+|.++..+++.+. .+|+++|+++.+++.++++++.++ ...++.++.+|+.+++. .+.||.|++.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N~--v~~~v~~~~~D~~~~~~-~~~~D~Vi~~ 199 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-ENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCcHHHhcc-ccCCCEEEEC
Confidence 5689999999999999999998863 589999999999999999998764 34679999999988764 5789999876
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
. .+.....+..+.+++|+||..
T Consensus 200 ~----p~~~~~~l~~a~~~lk~gG~i 221 (278)
T 3k6r_A 200 Y----VVRTHEFIPKALSIAKDGAII 221 (278)
T ss_dssp C----CSSGGGGHHHHHHHEEEEEEE
T ss_pred C----CCcHHHHHHHHHHHcCCCCEE
Confidence 3 234456677788888876654
No 242
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.05 E-value=1.3e-10 Score=102.05 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=79.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||||||+|-++..+....+..+|+++|+++.+++.+++++... ..+.++.+.|...-+. .++||+|++.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~----g~~~~~~v~D~~~~~p-~~~~DvaL~l 205 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL----NVPHRTNVADLLEDRL-DEPADVTLLL 205 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT----TCCEEEEECCTTTSCC-CSCCSEEEET
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeeecccCC-CCCcchHHHH
Confidence 4478999999999999999988878889999999999999999999775 3457888999876654 5789999999
Q ss_pred ccccCCCCHHH-HHHHHHHhhcCCCe
Q 020988 245 AALHCWPSPSN-AASVFSSSYSLLSI 269 (319)
Q Consensus 245 ~vl~h~~d~~~-~l~el~rvlk~g~~ 269 (319)
-+++|+.+..+ ..-.+...+++++.
T Consensus 206 kti~~Le~q~kg~g~~ll~aL~~~~v 231 (281)
T 3lcv_B 206 KTLPCLETQQRGSGWEVIDIVNSPNI 231 (281)
T ss_dssp TCHHHHHHHSTTHHHHHHHHSSCSEE
T ss_pred HHHHHhhhhhhHHHHHHHHHhCCCCE
Confidence 99999965432 22245555555443
No 243
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.04 E-value=2e-10 Score=107.83 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=74.3
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCC-CeEEEEcCCCCC-CC---CCCCcc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRL-PF---ASGFVD 239 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~i~~~~~d~~~l-p~---~~~~fD 239 (319)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++.++ ... +++++++|+.+. +. ...+||
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~--~~~~~v~~~~~D~~~~l~~~~~~~~~fD 287 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYD 287 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHHhCCCcc
Confidence 467899999999999999999865 2489999999999999999988753 122 799999998662 21 245899
Q ss_pred EEEecccc-----cCCCCHHHH----HHHHHHhhcCCCee
Q 020988 240 AVHAGAAL-----HCWPSPSNA----ASVFSSSYSLLSIC 270 (319)
Q Consensus 240 ~V~~~~vl-----~h~~d~~~~----l~el~rvlk~g~~~ 270 (319)
+|++.-.. .+..+.... ++++.++|+|+|..
T Consensus 288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l 327 (385)
T 2b78_A 288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLI 327 (385)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 99985432 344454433 34445555555443
No 244
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=99.04 E-value=1.8e-09 Score=96.37 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=70.2
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
..+.+.+.+...++ +|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++.. .+++++.+|+.++++
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~------~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSG------LPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTT------SSEEEEESCGGGSCG
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCC------CCEEEEECChhhCCh
Confidence 34566667777778 999999999999999999875 999999999999999998742 489999999999887
Q ss_pred CCC-CccEEEeccc
Q 020988 234 ASG-FVDAVHAGAA 246 (319)
Q Consensus 234 ~~~-~fD~V~~~~v 246 (319)
++. .+|.|+++.-
T Consensus 106 ~~~~~~~~iv~NlP 119 (271)
T 3fut_A 106 EEVPQGSLLVANLP 119 (271)
T ss_dssp GGSCTTEEEEEEEC
T ss_pred hhccCccEEEecCc
Confidence 542 6888877643
No 245
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=99.04 E-value=1.4e-09 Score=103.89 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=99.0
Q ss_pred CCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-------------CCCeEEEEeCCHHHHHHHHHHHhhc
Q 020988 147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-------------TYSGVVALDFSENMLRQCYDFIKQD 213 (319)
Q Consensus 147 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-------------~~~~v~gvD~s~~~l~~a~~~~~~~ 213 (319)
.++.|....+.+.+.+.+.++.+|||.|||+|.++..+.+.. ...+++|+|+++.+++.|+.++...
T Consensus 152 ~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~ 231 (445)
T 2okc_A 152 QYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH 231 (445)
T ss_dssp GGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh
Confidence 467888888888888887788899999999999998887642 1247999999999999999887654
Q ss_pred CccCCCCeEEEEcCCCCCCCCCCCccEEEecccccCCCCH-----------------HHHHHHHHHhhcCCCeeEEEEe
Q 020988 214 NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP-----------------SNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 214 ~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~-----------------~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+.. ..++.+.++|....+.. .+||+|+++-.+.+.... ...++.+.++|+++|..++++.
T Consensus 232 g~~-~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 232 GIG-TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp TCC-SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC-cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 211 01567899998877654 489999998766553321 3678889999999988888775
No 246
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.99 E-value=2.4e-10 Score=107.09 Aligned_cols=101 Identities=19% Similarity=0.117 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----CCCCccEE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV 241 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V 241 (319)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++++.++ ..++.++++|+.+... .+++||+|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~n~---~~~~~~~~~d~~~~~~~~~~~~~~fD~I 283 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLNG---LGNVRVLEANAFDLLRRLEKEGERFDLV 283 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHTT---CTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC---CCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence 67899999999999999999873 499999999999999999988753 3459999999876531 15789999
Q ss_pred Eeccccc---------CCCCHHHHHHHHHHhhcCCCeeE
Q 020988 242 HAGAALH---------CWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 242 ~~~~vl~---------h~~d~~~~l~el~rvlk~g~~~g 271 (319)
++.-... +..+....+.++.++|+|+|...
T Consensus 284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 322 (382)
T 1wxx_A 284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILA 322 (382)
T ss_dssp EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 9843211 11223455666666766655433
No 247
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.98 E-value=7.4e-10 Score=111.42 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=78.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHA 243 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~ 243 (319)
.++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++++.++.. ..+++++++|+.+ ++...++||+|++
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~-~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLT-GRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCC-STTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred cCCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHhcCCCccEEEE
Confidence 3688999999999999999988764 46999999999999999998875310 1479999999877 3444579999998
Q ss_pred cc-----------cccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 244 GA-----------ALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 244 ~~-----------vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
.- ++++..+....++++.++|+|+|.+.
T Consensus 616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~ 654 (703)
T 3v97_A 616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIM 654 (703)
T ss_dssp CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 54 22333344556667777777665443
No 248
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.98 E-value=4.6e-10 Score=105.64 Aligned_cols=102 Identities=15% Similarity=0.051 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----CCCCccEE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV 241 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V 241 (319)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++.++ ...+++++.+|+.+... ..++||+|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~V 293 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNG--VEDRMKFIVGSAFEEMEKLQKKGEKFDIV 293 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEECCHHHHHHHHHhhCCCCCEE
Confidence 67899999999999999999874 3589999999999999999987753 11279999999876531 25689999
Q ss_pred Eecccc---------cCCCCHHHHHHHHHHhhcCCCee
Q 020988 242 HAGAAL---------HCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 242 ~~~~vl---------~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
++.... ++..+....+.++.++|+|+|..
T Consensus 294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 331 (396)
T 2as0_A 294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGIL 331 (396)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 985322 11123345556666666655443
No 249
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.98 E-value=2.1e-10 Score=104.30 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=73.1
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeC----CHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCCCCCCCc
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFV 238 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~f 238 (319)
..++.+|||||||+|.++..+++. . +|+|+|+ ++.+++.+. ... ...+++.++++ |+..++ .++|
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~-~--~V~gvD~~~~~~~~~~~~~~--~~~---~~~~~v~~~~~~D~~~l~--~~~f 149 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL-K--NVREVKGLTKGGPGHEEPIP--MST---YGWNLVRLQSGVDVFFIP--PERC 149 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS-T--TEEEEEEECCCSTTSCCCCC--CCS---TTGGGEEEECSCCTTTSC--CCCC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc-C--CEEEEeccccCchhHHHHHH--hhh---cCCCCeEEEeccccccCC--cCCC
Confidence 356789999999999999999987 3 8999999 554432111 000 01247899999 888776 4689
Q ss_pred cEEEeccccc---CCCCHH---HHHHHHHHhhcCCCeeEEEEeec
Q 020988 239 DAVHAGAALH---CWPSPS---NAASVFSSSYSLLSICYLLQFRY 277 (319)
Q Consensus 239 D~V~~~~vl~---h~~d~~---~~l~el~rvlk~g~~~g~~~~~~ 277 (319)
|+|++..+++ +..+.. .+++++.++|||||.+.+-++..
T Consensus 150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 9999976653 222222 46888889999999766655543
No 250
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.97 E-value=3.4e-09 Score=97.55 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=77.9
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
.++.+|||+|||+|.++.. ++. ..+|+|+|+|+.+++.++++++.++ ...++.++.+|+.+.. ++||+|++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~n~--l~~~v~~~~~D~~~~~---~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKLNK--LEHKIIPILSDVREVD---VKGNRVIMN 265 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred CCCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECChHHhc---CCCcEEEEC
Confidence 4688999999999999998 773 4599999999999999999988753 2257999999998775 789999985
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
..- ....+++++.++++++|......+.
T Consensus 266 pP~----~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 266 LPK----FAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp CTT----TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred CcH----hHHHHHHHHHHHcCCCCEEEEEEee
Confidence 321 1236678888888876655444443
No 251
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.96 E-value=1.2e-08 Score=96.67 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=72.3
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++++.++ .. ++++.+|+.++.. .+||+|++
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ng---l~-v~~~~~d~~~~~~--~~fD~Vv~ 359 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINN---VD-AEFEVASDREVSV--KGFDTVIV 359 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CC-EEEEECCTTTCCC--TTCSEEEE
T ss_pred cCCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC---Cc-EEEEECChHHcCc--cCCCEEEE
Confidence 45678999999999999999998765 99999999999999999987652 23 8999999988753 28999998
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
...-... ...+++.+. .++|++.
T Consensus 360 dPPr~g~--~~~~~~~l~-~l~p~gi 382 (425)
T 2jjq_A 360 DPPRAGL--HPRLVKRLN-REKPGVI 382 (425)
T ss_dssp CCCTTCS--CHHHHHHHH-HHCCSEE
T ss_pred cCCccch--HHHHHHHHH-hcCCCcE
Confidence 5432222 123455554 3566553
No 252
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.96 E-value=1.6e-09 Score=102.41 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=87.5
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE
Q 020988 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224 (319)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~ 224 (319)
..++.|....+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.| .++.++
T Consensus 19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~ 86 (421)
T 2ih2_A 19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGI 86 (421)
T ss_dssp --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEE
T ss_pred ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEE
Confidence 3466777778888888866567899999999999999998763 446999999999988665 268899
Q ss_pred EcCCCCCCCCCCCccEEEeccccc----------CCCCHH-------------------HHHHHHHHhhcCCCeeEEEEe
Q 020988 225 RADVCRLPFASGFVDAVHAGAALH----------CWPSPS-------------------NAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 225 ~~d~~~lp~~~~~fD~V~~~~vl~----------h~~d~~-------------------~~l~el~rvlk~g~~~g~~~~ 275 (319)
++|+...+. +++||+|+++-... |+.+.. .+++.+.++|+++|...+++.
T Consensus 87 ~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 87 LADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp ESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 999987653 46899999963221 122211 346778888888887777766
Q ss_pred e
Q 020988 276 R 276 (319)
Q Consensus 276 ~ 276 (319)
.
T Consensus 166 ~ 166 (421)
T 2ih2_A 166 A 166 (421)
T ss_dssp G
T ss_pred h
Confidence 4
No 253
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.95 E-value=6.4e-10 Score=106.16 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=69.9
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-C
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~ 233 (319)
..+...+...++.+|||+|||+|..+..+++... ...|+++|+|+.+++.++++++..+ ..++.++.+|+..++ .
T Consensus 95 ~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g---~~nv~v~~~Da~~l~~~ 171 (456)
T 3m4x_A 95 MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG---VSNAIVTNHAPAELVPH 171 (456)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT---CSSEEEECCCHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhhh
Confidence 4455566778899999999999999999987632 3589999999999999999998763 457999999987764 2
Q ss_pred CCCCccEEEe
Q 020988 234 ASGFVDAVHA 243 (319)
Q Consensus 234 ~~~~fD~V~~ 243 (319)
.+++||+|++
T Consensus 172 ~~~~FD~Il~ 181 (456)
T 3m4x_A 172 FSGFFDRIVV 181 (456)
T ss_dssp HTTCEEEEEE
T ss_pred ccccCCEEEE
Confidence 3578999997
No 254
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.95 E-value=1.3e-09 Score=98.81 Aligned_cols=86 Identities=16% Similarity=0.276 Sum_probs=71.1
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--C
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F 233 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~ 233 (319)
+.+.+.+...++++|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...+ .++.++++|+.+++ +
T Consensus 16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~~~l 91 (301)
T 1m6y_A 16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFLL 91 (301)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHHH
T ss_pred HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHHHHH
Confidence 34556666778899999999999999999998655699999999999999999987642 58999999998875 2
Q ss_pred C---CCCccEEEecc
Q 020988 234 A---SGFVDAVHAGA 245 (319)
Q Consensus 234 ~---~~~fD~V~~~~ 245 (319)
. ..+||.|++..
T Consensus 92 ~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 92 KTLGIEKVDGILMDL 106 (301)
T ss_dssp HHTTCSCEEEEEEEC
T ss_pred HhcCCCCCCEEEEcC
Confidence 2 15899999754
No 255
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.94 E-value=2.5e-09 Score=100.45 Aligned_cols=100 Identities=12% Similarity=-0.005 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEec
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG 244 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~ 244 (319)
++.+|||+|||+|.++..+++.+. .|+++|+|+.+++.|+++++.++ ....+.++|+.+.. ...+.||+|++.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng----~~~~~~~~D~~~~l~~~~~~fD~Ii~d 287 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLG----LRVDIRHGEALPTLRGLEGPFHHVLLD 287 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT----CCCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhC----CCCcEEEccHHHHHHHhcCCCCEEEEC
Confidence 588999999999999999999876 69999999999999999987763 12356788887642 213349999986
Q ss_pred ccccC---------CCCHHHHHHHHHHhhcCCCeeE
Q 020988 245 AALHC---------WPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 245 ~vl~h---------~~d~~~~l~el~rvlk~g~~~g 271 (319)
..... ..+...+++.+.++|+|+|.+.
T Consensus 288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv 323 (393)
T 4dmg_A 288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLW 323 (393)
T ss_dssp CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 43211 1122355666666666655443
No 256
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.94 E-value=4.2e-09 Score=98.93 Aligned_cols=112 Identities=12% Similarity=0.066 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--------------------------------------CeE
Q 020988 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SGV 193 (319)
Q Consensus 152 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--------------------------------------~~v 193 (319)
+.....+.......++..|||.+||+|.++..++..+.+ .+|
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 333455555556667889999999999999888876432 469
Q ss_pred EEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc-CC---CCHHHHHHHHHHhhcC
Q 020988 194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAASVFSSSYSL 266 (319)
Q Consensus 194 ~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~el~rvlk~ 266 (319)
+|+|+|+.+++.|++++...+ ...+++++++|+.+++.+ .+||+|+++--+. .+ .+...+.+++.+++|+
T Consensus 267 ~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAG--LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR 340 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTT--CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence 999999999999999988753 234699999999998765 5899999984321 12 1233456667777777
No 257
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.93 E-value=3.3e-09 Score=99.43 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=83.6
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--------------------------------------CeEEE
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SGVVA 195 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--------------------------------------~~v~g 195 (319)
....+.......++.+|||++||+|.++..++..+.+ .+|+|
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 3455555555667889999999999999998876432 47999
Q ss_pred EeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc-CC---CCHHHHHHHHHHhhcCC
Q 020988 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAASVFSSSYSLL 267 (319)
Q Consensus 196 vD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~el~rvlk~g 267 (319)
+|+++.+++.|++++...+ ...++++.++|+.+++.+ .+||+|+++--+. .+ .+...+.+++.+++|+.
T Consensus 263 vDid~~ai~~Ar~Na~~~g--l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAG--VDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp EESCHHHHHHHHHHHHHHT--CGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred EECCHHHHHHHHHHHHHcC--CCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999987753 224799999999998764 5899999976432 22 12345566777788873
No 258
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.92 E-value=9.9e-09 Score=96.06 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=83.2
Q ss_pred HHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--------------------------------------CeEEE
Q 020988 154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------SGVVA 195 (319)
Q Consensus 154 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--------------------------------------~~v~g 195 (319)
....+.......++..|||.+||+|.++..++..+.+ .+++|
T Consensus 182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 3455555556667889999999999999888876432 46999
Q ss_pred EeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEeccccc-CCC---CHHHHHHHHHHhhcC
Q 020988 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CWP---SPSNAASVFSSSYSL 266 (319)
Q Consensus 196 vD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~~---d~~~~l~el~rvlk~ 266 (319)
+|+|+.+++.|++++...+ ....++++++|+.+++.+ .+||+|+++--.. -+. +...+.+++.+.+|.
T Consensus 262 vDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVG--LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp EESCHHHHHHHHHHHHHTT--CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred EECCHHHHHHHHHHHHHcC--CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999998753 234699999999998765 5899999974332 232 234556677778887
No 259
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.87 E-value=5.6e-09 Score=93.57 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=61.6
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp 232 (319)
.+.+.+.+...++.+|||||||+|.++..+++.+.. .+|+|+|+|+.+++.++++. . .+++++.+|+.+++
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~------~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G------ELLELHAGDALTFD 103 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G------GGEEEEESCGGGCC
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C------CCcEEEECChhcCC
Confidence 455666777778899999999999999999998761 23999999999999999884 2 48999999999988
Q ss_pred CCC
Q 020988 233 FAS 235 (319)
Q Consensus 233 ~~~ 235 (319)
+++
T Consensus 104 ~~~ 106 (279)
T 3uzu_A 104 FGS 106 (279)
T ss_dssp GGG
T ss_pred hhH
Confidence 653
No 260
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.86 E-value=9.9e-09 Score=90.47 Aligned_cols=88 Identities=16% Similarity=0.271 Sum_probs=67.3
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++ . ..+++++.+|+.+++++
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~-~------~~~v~~i~~D~~~~~~~ 91 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI-G------DERLEVINEDASKFPFC 91 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS-C------CTTEEEECSCTTTCCGG
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc-c------CCCeEEEEcchhhCChh
Confidence 4556666777788999999999999999999884 35999999999999999876 2 35899999999998876
Q ss_pred CCCccEEEecccccCC
Q 020988 235 SGFVDAVHAGAALHCW 250 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~ 250 (319)
+..-+.++..+.-.++
T Consensus 92 ~~~~~~~vv~NlPy~i 107 (249)
T 3ftd_A 92 SLGKELKVVGNLPYNV 107 (249)
T ss_dssp GSCSSEEEEEECCTTT
T ss_pred HccCCcEEEEECchhc
Confidence 4211334444444444
No 261
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.86 E-value=8.2e-10 Score=97.96 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=67.1
Q ss_pred HHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCH-------HHHHHHHHHHhhcCccCCCCeEEEEcCCCC
Q 020988 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE-------NMLRQCYDFIKQDNTILTSNLALVRADVCR 230 (319)
Q Consensus 158 l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~-------~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~ 230 (319)
+...+...++.+|||+|||+|.++..+++.+. +|+|+|+++ .+++.|+++.+.++ ...+++++.+|+.+
T Consensus 75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~--~~~ri~~~~~d~~~ 150 (258)
T 2r6z_A 75 IAKAVNHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQD--TAARINLHFGNAAE 150 (258)
T ss_dssp HHHHTTGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHHH--HHTTEEEEESCHHH
T ss_pred HHHHhCcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhhC--CccCeEEEECCHHH
Confidence 33444445678999999999999999999865 999999999 99999987765432 11359999999977
Q ss_pred C-C-CCC--CCccEEEecccccCC
Q 020988 231 L-P-FAS--GFVDAVHAGAALHCW 250 (319)
Q Consensus 231 l-p-~~~--~~fD~V~~~~vl~h~ 250 (319)
+ + +++ ++||+|++.-.+.|.
T Consensus 151 ~l~~~~~~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 151 QMPALVKTQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHHHHHHHHCCCSEEEECCCC---
T ss_pred HHHhhhccCCCccEEEECCCCCCc
Confidence 4 3 333 689999998766653
No 262
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.81 E-value=2.4e-08 Score=90.82 Aligned_cols=84 Identities=13% Similarity=0.177 Sum_probs=69.1
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~ 235 (319)
.+...+...++.+|||+|||+|..+..+++. +...+|+++|+++.+++.++++++..+ ..++.++.+|+.+++...
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g---~~~v~~~~~D~~~~~~~~ 169 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSD 169 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTC
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCChHhcCccc
Confidence 4445666778999999999999999999886 344699999999999999999998753 357999999998775432
Q ss_pred ---CCccEEEe
Q 020988 236 ---GFVDAVHA 243 (319)
Q Consensus 236 ---~~fD~V~~ 243 (319)
.+||.|++
T Consensus 170 ~~~~~fD~Vl~ 180 (309)
T 2b9e_A 170 PRYHEVHYILL 180 (309)
T ss_dssp GGGTTEEEEEE
T ss_pred cccCCCCEEEE
Confidence 57999997
No 263
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.80 E-value=9.7e-09 Score=92.38 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=68.4
Q ss_pred hccCCCeEEEEcCCc------ChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEE-EEcCCCCCCCC
Q 020988 163 KSAQGGLLVDVSCGS------GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLPFA 234 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~------G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp~~ 234 (319)
...++.+|||+|||+ |. ..+++. ++..+|+|+|+|+. + .++++ +++|+.++++.
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v--------~~v~~~i~gD~~~~~~~ 121 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V--------SDADSTLIGDCATVHTA 121 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B--------CSSSEEEESCGGGCCCS
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C--------CCCEEEEECccccCCcc
Confidence 346788999999944 65 334444 33469999999997 1 26778 99999988764
Q ss_pred CCCccEEEecccccC-----------CCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 235 SGFVDAVHAGAALHC-----------WPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h-----------~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
++||+|++....+. ......+++++.++|||||.+.+.++.
T Consensus 122 -~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 122 -NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp -SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred -CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 68999999643221 111247889999999998887776664
No 264
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.79 E-value=1.5e-08 Score=94.33 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=74.0
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (319)
...+.+.+.. .+.+|||+|||+|.++..+++... +|+|+|+|+.+++.|+++++.++ ..+++++.+|+.++.
T Consensus 203 ~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~ng---~~~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 203 LEWALDVTKG-SKGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANH---IDNVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHTT---CCSEEEECCCSHHHHHH
T ss_pred HHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECCHHHHHHH
Confidence 3444444443 357899999999999999988654 99999999999999999987753 358999999987642
Q ss_pred CCC--------------CCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 233 FAS--------------GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 233 ~~~--------------~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
+.. .+||+|++.---. .+..++.+++++++.
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~------g~~~~~~~~l~~~g~ 321 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRS------GLDSETEKMVQAYPR 321 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTT------CCCHHHHHHHTTSSE
T ss_pred HhhccccccccccccccCCCCEEEECcCcc------ccHHHHHHHHhCCCE
Confidence 121 3799998742211 123456666665553
No 265
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.77 E-value=5e-09 Score=92.54 Aligned_cols=84 Identities=8% Similarity=0.121 Sum_probs=63.0
Q ss_pred HHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC
Q 020988 155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA 234 (319)
Q Consensus 155 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~ 234 (319)
.+.+.+.+...++.+|||||||+|.++. +. .+...+|+|+|+++.+++.+++++.. ..+++++.+|+..++++
T Consensus 10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGCCHH
T ss_pred HHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECchhhCCHH
Confidence 3455566666788899999999999999 65 45522299999999999999987643 24899999999988764
Q ss_pred CC-----CccEEEecc
Q 020988 235 SG-----FVDAVHAGA 245 (319)
Q Consensus 235 ~~-----~fD~V~~~~ 245 (319)
+. ..|.|+++-
T Consensus 83 ~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 83 ELAEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHHHTSCEEEEEEC
T ss_pred HhhcccCCceEEEECC
Confidence 31 235666553
No 266
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.75 E-value=2.1e-08 Score=97.90 Aligned_cols=127 Identities=8% Similarity=-0.040 Sum_probs=96.4
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC------------------CCeEEEEeCCHHHHHHHH
Q 020988 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT------------------YSGVVALDFSENMLRQCY 207 (319)
Q Consensus 146 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~------------------~~~v~gvD~s~~~l~~a~ 207 (319)
..++.|....+.+.+.+.+.++.+|||.+||+|.++..+.+... ...++|+|+++.+++.|+
T Consensus 149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~ 228 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 228 (541)
T ss_dssp -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence 45788888888888888877888999999999999988776420 137999999999999999
Q ss_pred HHHhhcCccCCCC-----eEEEEcCCCCCC-CCCCCccEEEecccccCCCC--------------HHHHHHHHHHhhcCC
Q 020988 208 DFIKQDNTILTSN-----LALVRADVCRLP-FASGFVDAVHAGAALHCWPS--------------PSNAASVFSSSYSLL 267 (319)
Q Consensus 208 ~~~~~~~~~~~~~-----i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~d--------------~~~~l~el~rvlk~g 267 (319)
.++.-.+ ... +.+.++|....+ ....+||+|+++-.+..... ....++.+.+.|+++
T Consensus 229 ~nl~l~g---i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 305 (541)
T 2ar0_A 229 MNCLLHD---IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 305 (541)
T ss_dssp HHHHTTT---CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHhC---CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence 8875442 222 678899986643 34578999999765443321 135788889999999
Q ss_pred CeeEEEEe
Q 020988 268 SICYLLQF 275 (319)
Q Consensus 268 ~~~g~~~~ 275 (319)
|..++++.
T Consensus 306 Gr~a~V~p 313 (541)
T 2ar0_A 306 GRAAVVVP 313 (541)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEec
Confidence 88888876
No 267
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.73 E-value=2.2e-08 Score=93.47 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc------------CCCCeEEEEcCCCCCCC
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------LTSNLALVRADVCRLPF 233 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~------------~~~~i~~~~~d~~~lp~ 233 (319)
++.+|||+|||+|.++..+++..+..+|+++|+++.+++.++++++.++.. ...+++++.+|+..+..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 678999999999999999998855568999999999999999999775100 12348999999866421
Q ss_pred -CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 234 -ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 234 -~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
..++||+|++.- . ..+...+..+.+.++++|..
T Consensus 127 ~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l 160 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGIL 160 (378)
T ss_dssp HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEE
Confidence 135799999532 1 23467778888887776643
No 268
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.69 E-value=2.7e-08 Score=91.60 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=62.3
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc--cCC---CCeEEEEcCCCCCCC----CCC
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--ILT---SNLALVRADVCRLPF----ASG 236 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~---~~i~~~~~d~~~lp~----~~~ 236 (319)
.+.+|||||||+|.++..+++.++ .+|+++|+++.+++.|++++...+. ... ++++++.+|+...-- .++
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 578999999999999999998875 7899999999999999998753211 001 279999999876421 357
Q ss_pred CccEEEecc
Q 020988 237 FVDAVHAGA 245 (319)
Q Consensus 237 ~fD~V~~~~ 245 (319)
+||+|++..
T Consensus 267 ~fDvII~D~ 275 (364)
T 2qfm_A 267 EFDYVINDL 275 (364)
T ss_dssp CEEEEEEEC
T ss_pred CceEEEECC
Confidence 899999864
No 269
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.65 E-value=4.4e-08 Score=86.64 Aligned_cols=109 Identities=16% Similarity=0.040 Sum_probs=72.0
Q ss_pred HHHHHHhhccCC--CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc------CCCCeEEEEcC
Q 020988 156 KMAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRAD 227 (319)
Q Consensus 156 ~~l~~~l~~~~~--~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~------~~~~i~~~~~d 227 (319)
+.+.+.+...++ .+|||++||+|..+..++..+. +|+++|+++.+.+.+++.++..... ...+++++.+|
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 344556655566 8999999999999999999876 8999999998876666654321100 01378999999
Q ss_pred CCC-CCCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCC
Q 020988 228 VCR-LPFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL 267 (319)
Q Consensus 228 ~~~-lp~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g 267 (319)
..+ ++...++||+|++.-.+.+- ....++++..++++++
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y~~~-~~saavkk~~~~lr~l 193 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMFPHK-QKSALVKKEMRVFQSL 193 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCCC-CC-----HHHHHHHHH
T ss_pred HHHHHHhCcccCCEEEEcCCCCCc-ccchHHHHHHHHHHHh
Confidence 876 33222479999998777663 3233344444444443
No 270
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.63 E-value=2.3e-08 Score=94.00 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc--CccCCCCeEEEEcCCCCC-CC-CCCCccEE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PF-ASGFVDAV 241 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V 241 (319)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|+++++.. + ..+++++++|+.+. +. .+++||+|
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~g---l~~i~~i~~Da~~~L~~~~~~~fDvV 167 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNE---GKDVNILTGDFKEYLPLIKTFHPDYI 167 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCT---TCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccC---CCcEEEEECcHHHhhhhccCCCceEE
Confidence 478999999999999999988865 9999999999999999998764 2 25799999999874 32 23589999
Q ss_pred Eec
Q 020988 242 HAG 244 (319)
Q Consensus 242 ~~~ 244 (319)
++.
T Consensus 168 ~lD 170 (410)
T 3ll7_A 168 YVD 170 (410)
T ss_dssp EEC
T ss_pred EEC
Confidence 984
No 271
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=98.61 E-value=1.1e-07 Score=89.04 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=73.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCC-eEEEEcCCCCCC--CCCCCccE
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLP--FASGFVDA 240 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-i~~~~~d~~~lp--~~~~~fD~ 240 (319)
.++.+|||++||+|.++..+++.... .+|+++|+++.+++.++++++.++ ...+ ++++.+|+.++- ...+.||+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng--l~~~~v~v~~~Da~~~l~~~~~~~fD~ 128 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN--IPEDRYEIHGMEANFFLRKEWGFGFDY 128 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence 46789999999999999999986322 589999999999999999998763 1223 899999985531 12467999
Q ss_pred EEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988 241 VHAGAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 241 V~~~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
|++.- ...+...+..+.++++++|
T Consensus 129 V~lDP----~g~~~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 129 VDLDP----FGTPVPFIESVALSMKRGG 152 (392)
T ss_dssp EEECC----SSCCHHHHHHHHHHEEEEE
T ss_pred EEECC----CcCHHHHHHHHHHHhCCCC
Confidence 99864 1233556777777776655
No 272
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.58 E-value=3.4e-07 Score=92.13 Aligned_cols=121 Identities=15% Similarity=0.055 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC------------------------------------------CC
Q 020988 153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG------------------------------------------TY 190 (319)
Q Consensus 153 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g------------------------------------------~~ 190 (319)
.....+.......++.+|||.+||+|.++..++..+ +.
T Consensus 177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 345555566666678899999999999998887652 12
Q ss_pred CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--CCCCCCccEEEeccccc-CCC---CHHHHHHHHHHhh
Q 020988 191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGAALH-CWP---SPSNAASVFSSSY 264 (319)
Q Consensus 191 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~-h~~---d~~~~l~el~rvl 264 (319)
..++|+|+++.+++.|++++...+ ....+++.++|+.++ |..+++||+|+++--.. -+. +.....+.+.+++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~ag--v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAG--IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence 479999999999999999998763 233589999999887 33344899999984322 111 2234444444444
Q ss_pred ---cCCCeeEEEEe
Q 020988 265 ---SLLSICYLLQF 275 (319)
Q Consensus 265 ---k~g~~~g~~~~ 275 (319)
.+|+..+++..
T Consensus 335 k~~~~g~~~~ilt~ 348 (703)
T 3v97_A 335 KNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHCTTCEEEEEES
T ss_pred HhhCCCCeEEEEeC
Confidence 46766666544
No 273
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=98.58 E-value=6.4e-07 Score=87.31 Aligned_cols=147 Identities=14% Similarity=-0.008 Sum_probs=105.9
Q ss_pred chhhHHhHHhHHHhhh-----hCCCCCcHHHHHHHHHHhh----ccCCCeEEEEcCCcChHHHHHHhhC---CCCeEEEE
Q 020988 129 PFVSFLYERGWRQNFN-----RSGFPGPDEEFKMAQEYFK----SAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVAL 196 (319)
Q Consensus 129 ~~~s~~~~~~w~~~~~-----~~~~~~~~~~~~~l~~~l~----~~~~~~VLDiGcG~G~~~~~l~~~g---~~~~v~gv 196 (319)
+.+...|+...++... ...|+.|....+.+.+.+. +.++.+|||.+||+|.++..+.+.. ....++|+
T Consensus 175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~ 254 (542)
T 3lkd_A 175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ 254 (542)
T ss_dssp THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence 4455556655443221 2458899999999988887 4578899999999999998887762 24589999
Q ss_pred eCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC--C-CCCCCccEEEeccccc--C-----------------CC---
Q 020988 197 DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--P-FASGFVDAVHAGAALH--C-----------------WP--- 251 (319)
Q Consensus 197 D~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p-~~~~~fD~V~~~~vl~--h-----------------~~--- 251 (319)
|+++.+++.|+.++.-.+. ...++.+.++|.... | .....||+|+++--+. + ++
T Consensus 255 Eid~~~~~lA~~Nl~l~gi-~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s 333 (542)
T 3lkd_A 255 ELNTSTYNLARMNMILHGV-PIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKS 333 (542)
T ss_dssp ESCHHHHHHHHHHHHHTTC-CGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTT
T ss_pred ECcHHHHHHHHHHHHHcCC-CcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCc
Confidence 9999999999988755421 013678999998766 3 3467899999863221 0 11
Q ss_pred C-HHHHHHHHHHhhc-CCCeeEEEEee
Q 020988 252 S-PSNAASVFSSSYS-LLSICYLLQFR 276 (319)
Q Consensus 252 d-~~~~l~el~rvlk-~g~~~g~~~~~ 276 (319)
+ .-..++.+.+.|+ ++|..++++..
T Consensus 334 ~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 334 KADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp CCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred hhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 0 1236888899999 99999988873
No 274
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.56 E-value=2.6e-07 Score=91.11 Aligned_cols=101 Identities=10% Similarity=-0.027 Sum_probs=67.8
Q ss_pred CCeEEEEcCCcChHHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
...|||||||+|-+.....+.+ ...+|++||-|+ +...+++..+.++ ...+|+++.+|++++..+ +++|+|+
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~--~~dkVtVI~gd~eev~LP-EKVDIIV 433 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE--WGSQVTVVSSDMREWVAP-EKADIIV 433 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT--TGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc--CCCeEEEEeCcceeccCC-cccCEEE
Confidence 3579999999998854444432 223689999998 5667887776664 467899999999998776 6899999
Q ss_pred ecc---cccCCCCHHHHHHHHHHhhcCCCeeEEEEe
Q 020988 243 AGA---ALHCWPSPSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 243 ~~~---vl~h~~d~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
+-. .+-+-.-+ ..+....|.|| ++|+++.
T Consensus 434 SEwMG~fLl~E~ml-evL~Ardr~LK---PgGimiP 465 (637)
T 4gqb_A 434 SELLGSFADNELSP-ECLDGAQHFLK---DDGVSIP 465 (637)
T ss_dssp CCCCBTTBGGGCHH-HHHHHHGGGEE---EEEEEES
T ss_pred EEcCcccccccCCH-HHHHHHHHhcC---CCcEEcc
Confidence 832 11111122 34444444554 5566655
No 275
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=98.51 E-value=2.4e-07 Score=90.47 Aligned_cols=144 Identities=15% Similarity=0.010 Sum_probs=99.8
Q ss_pred chhhHHhHHhHHHhhh-----hCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCC--------------
Q 020988 129 PFVSFLYERGWRQNFN-----RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-------------- 189 (319)
Q Consensus 129 ~~~s~~~~~~w~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~-------------- 189 (319)
+.+...|+....+... ...|+.|....+.|.+.+.+.++ +|||.+||+|.++..+.+...
T Consensus 203 D~lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~ 281 (544)
T 3khk_A 203 DILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQK 281 (544)
T ss_dssp CSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHG
T ss_pred hHHHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHh
Confidence 4445556654333211 14578999999999998876554 999999999999887754310
Q ss_pred -CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-CCCCCccEEEecccccC------------------
Q 020988 190 -YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGAALHC------------------ 249 (319)
Q Consensus 190 -~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h------------------ 249 (319)
...++|+|+++.+++.|+.++.-.+. ..++.+.++|....+ +.+.+||+|+++--+..
T Consensus 282 ~~~~i~G~Eid~~~~~lA~~Nl~l~gi--~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~ 359 (544)
T 3khk_A 282 KQISVYGQESNPTTWKLAAMNMVIRGI--DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINT 359 (544)
T ss_dssp GGEEEEECCCCHHHHHHHHHHHHHTTC--CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECC
T ss_pred hhceEEEEeCCHHHHHHHHHHHHHhCC--CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCc
Confidence 34899999999999999988765431 223444778876554 45679999999643331
Q ss_pred -------CCC----HHHHHHHHHHhhcCCCeeEEEEe
Q 020988 250 -------WPS----PSNAASVFSSSYSLLSICYLLQF 275 (319)
Q Consensus 250 -------~~d----~~~~l~el~rvlk~g~~~g~~~~ 275 (319)
++. .-..++.+.+.|+++|..++++.
T Consensus 360 ~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP 396 (544)
T 3khk_A 360 NGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA 396 (544)
T ss_dssp C--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence 111 11567888889999888888876
No 276
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=98.35 E-value=1.8e-07 Score=64.52 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=38.5
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccC
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG 111 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~ 111 (319)
..++++||+|+++|..... .+.+.|+.|+..|++++|++.++.+..
T Consensus 7 LLeiL~CP~ck~~L~~~~~---------~g~LvC~~c~~~YPI~dGIPvmL~~Ea 52 (67)
T 2jny_A 7 LLEVLACPKDKGPLRYLES---------EQLLVNERLNLAYRIDDGIPVLLIDEA 52 (67)
T ss_dssp GTCCCBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred HHHHhCCCCCCCcCeEeCC---------CCEEEcCCCCccccCCCCEeeeChhHh
Confidence 3578999999999877542 367899999999999999999996643
No 277
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.35 E-value=1.1e-06 Score=86.79 Aligned_cols=98 Identities=10% Similarity=0.056 Sum_probs=66.0
Q ss_pred CCeEEEEcCCcChHHHHHHhh----C---------CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC
Q 020988 167 GGLLVDVSCGSGLFSRKFAKS----G---------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~----g---------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~ 233 (319)
+..|||||||+|-++....+. + ...+|++||-++.+....+++.. ++ ....|+++.+|++++.+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng--~~d~VtVI~gd~eev~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT--WKRRVTIIESDMRSLPG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT--TTTCSEEEESCGGGHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC--CCCeEEEEeCchhhccc
Confidence 458999999999996433222 2 23489999999987766665544 22 45679999999999866
Q ss_pred C-----CCCccEEEecccccCCCCH---HHHHHHHHHhhcCCC
Q 020988 234 A-----SGFVDAVHAGAALHCWPSP---SNAASVFSSSYSLLS 268 (319)
Q Consensus 234 ~-----~~~fD~V~~~~vl~h~~d~---~~~l~el~rvlk~g~ 268 (319)
+ .+++|+|++-.. ..+-+- ...+.-+.+.|||+|
T Consensus 487 p~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~G 528 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTT 528 (745)
T ss_dssp HHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTC
T ss_pred ccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCc
Confidence 3 478999998432 112111 245555667777764
No 278
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.33 E-value=2.7e-06 Score=74.99 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=71.9
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEE
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V 241 (319)
....++.+|||+|||+|.|+..+++..+...++|+|++.++....... .. ...++..+..+++...+..++||+|
T Consensus 70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~----~g~~ii~~~~~~dv~~l~~~~~DlV 144 (277)
T 3evf_A 70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QS----LGWNIITFKDKTDIHRLEPVKCDTL 144 (277)
T ss_dssp TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CB----TTGGGEEEECSCCTTTSCCCCCSEE
T ss_pred CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-Cc----CCCCeEEEeccceehhcCCCCccEE
Confidence 344678899999999999999888764444788888875431000000 00 0115556677766566777899999
Q ss_pred EecccccCCCCHH-------HHHHHHHHhhcCC-CeeEEEEee
Q 020988 242 HAGAALHCWPSPS-------NAASVFSSSYSLL-SICYLLQFR 276 (319)
Q Consensus 242 ~~~~vl~h~~d~~-------~~l~el~rvlk~g-~~~g~~~~~ 276 (319)
++..+.+ ..... .+++.+.++|+|+ |.+-.-+|.
T Consensus 145 lsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 145 LCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp EECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred EecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 9977655 33321 2346678899999 877776776
No 279
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=98.33 E-value=2.1e-07 Score=64.43 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=37.9
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~ 110 (319)
..++++||+|+++|..... .+.+.|++||..|++++|+..++.+.
T Consensus 5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~E 49 (68)
T 2jr6_A 5 FLDILVCPVTKGRLEYHQD---------KQELWSRQAKLAYPIKDGIPYMLENE 49 (68)
T ss_dssp SSCCCBCSSSCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCTTT
T ss_pred HhhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChhh
Confidence 3578999999999876542 36789999999999999999998653
No 280
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=98.32 E-value=2e-07 Score=64.48 Aligned_cols=44 Identities=18% Similarity=0.443 Sum_probs=37.5
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~ 110 (319)
.++++||+|+++|..... .+.+.|++||..|++++|+..++.+.
T Consensus 6 L~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~E 49 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKS---------KDELICKGDRLAFPIKDGIPMMLESE 49 (68)
T ss_dssp EEECBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCGGG
T ss_pred hhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChhh
Confidence 478999999999876542 36789999999999999999999653
No 281
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=98.31 E-value=2.4e-07 Score=64.48 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=38.5
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeeccccC
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG 111 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~~ 111 (319)
..++++||+|+++|..... .+.+.|++||..|++++|+..++.+..
T Consensus 5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQRA---------QAELVCNADRLAFPVRDGVPIMLEAEA 50 (70)
T ss_dssp CCCCCBCTTTCCBEEEETT---------TTEEEETTTTEEEEEETTEECCCGGGS
T ss_pred HhhheECCCCCCcCEEeCC---------CCEEEcCCCCceecCCCCeeeeChhhc
Confidence 3578999999999876542 367899999999999999999997643
No 282
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.31 E-value=6.1e-06 Score=73.94 Aligned_cols=109 Identities=10% Similarity=0.128 Sum_probs=82.1
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc--CccCCCCeEEEEcCCCCC-CCCCCCccE
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDA 240 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~ 240 (319)
...+.+||-||.|.|..++.+.+..+..+|+.+|+++.+++.+++.+... +....++++++.+|.... .-..++||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 34578999999999999999998866679999999999999999987542 122357999999998764 345678999
Q ss_pred EEeccc-----ccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 241 VHAGAA-----LHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 241 V~~~~v-----l~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
|+.-.. -.++.. ..+++.+++.|+|+|.....
T Consensus 161 Ii~D~~dp~~~~~~L~t-~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFT-SAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEESCCCCCCTTCCSSC-CHHHHHHHHTEEEEEEEEEE
T ss_pred EEEeCCCcCCCchhhcC-HHHHHHHHHHhCCCCEEEEe
Confidence 997421 122212 35678888888887765544
No 283
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=98.30 E-value=2.7e-07 Score=64.09 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=37.4
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~ 110 (319)
.++++||+|+++|..... .+.+.|++||..|++.+|+..++.+.
T Consensus 6 LeiL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~e 49 (69)
T 2pk7_A 6 LDILACPICKGPLKLSAD---------KTELISKGAGLAYPIRDGIPVMLESE 49 (69)
T ss_dssp GGTCCCTTTCCCCEECTT---------SSEEEETTTTEEEEEETTEECCCGGG
T ss_pred HhheeCCCCCCcCeEeCC---------CCEEEcCCCCcEecCcCCeeeeChhh
Confidence 578999999999876542 36789999999999999999998653
No 284
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=98.24 E-value=5.5e-06 Score=76.32 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=71.9
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..+|.++||+||++|.|+..+.+.+. .|++||+.+ |-... . ..+++.++++|+.........||+|+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~-l~~~l----~-----~~~~V~~~~~d~~~~~~~~~~~D~vvs 276 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP-MAQSL----M-----DTGQVTWLREDGFKFRPTRSNISWMVC 276 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC-CCHHH----H-----TTTCEEEECSCTTTCCCCSSCEEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh-cChhh----c-----cCCCeEEEeCccccccCCCCCcCEEEE
Confidence 45799999999999999999999876 999999864 22111 1 146899999999888777789999999
Q ss_pred cccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 244 GAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 244 ~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
-.+ .+|....+.+.+.+..+...+
T Consensus 277 Dm~----~~p~~~~~l~~~wl~~~~~~~ 300 (375)
T 4auk_A 277 DMV----EKPAKVAALMAQWLVNGWCRE 300 (375)
T ss_dssp CCS----SCHHHHHHHHHHHHHTTSCSE
T ss_pred cCC----CChHHhHHHHHHHHhccccce
Confidence 543 467787888888777775443
No 285
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=98.24 E-value=2.3e-05 Score=66.49 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=71.9
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC----
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---- 231 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l---- 231 (319)
+.+...+ .+..+||||||| +-+..+++. +..+|+.+|.+++..+.|+++++..+.....+++++.+|+.+.
T Consensus 22 ~~L~~~l--~~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg 96 (202)
T 3cvo_A 22 EALRMAY--EEAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWG 96 (202)
T ss_dssp HHHHHHH--HHCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGG
T ss_pred HHHHHHh--hCCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhccc
Confidence 4444433 346899999985 566666664 2469999999999999999999875311145899999997542
Q ss_pred -----------C--------C-CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 232 -----------P--------F-ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 232 -----------p--------~-~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+ . ..++||+|+.-.-. ....+....+.+++ +|++++.
T Consensus 97 ~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~---GG~Iv~D 153 (202)
T 3cvo_A 97 HPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITR---PVTLLFD 153 (202)
T ss_dssp CBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSS---CEEEEET
T ss_pred ccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCC---CeEEEEe
Confidence 1 1 23789999986531 22444444455555 4555553
No 286
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=98.23 E-value=1.1e-05 Score=81.06 Aligned_cols=131 Identities=13% Similarity=0.026 Sum_probs=87.5
Q ss_pred CCCCCcHHHHHHHHHH----hhc--cCCCeEEEEcCCcChHHHHHHhhCC---CCeEEEEeCCHHHHHHH--HHHHhhcC
Q 020988 146 SGFPGPDEEFKMAQEY----FKS--AQGGLLVDVSCGSGLFSRKFAKSGT---YSGVVALDFSENMLRQC--YDFIKQDN 214 (319)
Q Consensus 146 ~~~~~~~~~~~~l~~~----l~~--~~~~~VLDiGcG~G~~~~~l~~~g~---~~~v~gvD~s~~~l~~a--~~~~~~~~ 214 (319)
..++.|....+.+... +.. .++.+|||.|||+|.++..+++... ..+++|+|+++.+++.| +.++..++
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~ 374 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ 374 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence 4577888887777766 222 2578999999999999999887653 35799999999999999 44332210
Q ss_pred c-cCCCCeEEEEcCCCCC-CCCCCCccEEEecccccC-CCC----------------------------HHHHHHHHHHh
Q 020988 215 T-ILTSNLALVRADVCRL-PFASGFVDAVHAGAALHC-WPS----------------------------PSNAASVFSSS 263 (319)
Q Consensus 215 ~-~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~~vl~h-~~d----------------------------~~~~l~el~rv 263 (319)
. .......+...|+... +.....||+|+++--+.. ... ...+++.+.+.
T Consensus 375 LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~l 454 (878)
T 3s1s_A 375 LVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTEL 454 (878)
T ss_dssp TCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHH
T ss_pred hhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHh
Confidence 0 0111234555555543 234578999999754411 111 12346678889
Q ss_pred hcCCCeeEEEEee
Q 020988 264 YSLLSICYLLQFR 276 (319)
Q Consensus 264 lk~g~~~g~~~~~ 276 (319)
|+++|..++++..
T Consensus 455 LKpGGrLAfIlP~ 467 (878)
T 3s1s_A 455 VQDGTVISAIMPK 467 (878)
T ss_dssp SCTTCEEEEEEET
T ss_pred cCCCcEEEEEECh
Confidence 9999999988874
No 287
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=98.21 E-value=3.9e-06 Score=74.45 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=65.9
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 232 (319)
+.+.+.+...+++.+||.+||.|..+..+++.+ .+|+|+|.++.+++.|++ +.. .++.++.+++.+++
T Consensus 12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~--g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~L 82 (285)
T 1wg8_A 12 QEALDLLAVRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRHL 82 (285)
T ss_dssp HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHHH
T ss_pred HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHHH
Confidence 455566777789999999999999999999983 499999999999999998 643 48999999998864
Q ss_pred --CCCCCccEEEec
Q 020988 233 --FASGFVDAVHAG 244 (319)
Q Consensus 233 --~~~~~fD~V~~~ 244 (319)
...+++|.|++.
T Consensus 83 ~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 83 AALGVERVDGILAD 96 (285)
T ss_dssp HHTTCSCEEEEEEE
T ss_pred HHcCCCCcCEEEeC
Confidence 122579999974
No 288
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=98.17 E-value=9e-07 Score=58.85 Aligned_cols=43 Identities=26% Similarity=0.580 Sum_probs=36.8
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeC--ccCCccccCCceeeecccc
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS 110 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~--~Cg~~f~~~~g~~~~~~~~ 110 (319)
..++++||+|+++|.... +.+.|+ .|++.|++++|+..++.++
T Consensus 7 lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e 51 (56)
T 2kpi_A 7 LLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE 51 (56)
T ss_dssp CTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred HHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence 357899999999987654 668999 9999999999999998543
No 289
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.13 E-value=8.5e-06 Score=75.65 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=71.3
Q ss_pred CCeEEEEcCCcChHHHHHH--------hhC-------CCCeEEEEeCCHHHHHHHHHHHhhcCcc---------C--CCC
Q 020988 167 GGLLVDVSCGSGLFSRKFA--------KSG-------TYSGVVALDFSENMLRQCYDFIKQDNTI---------L--TSN 220 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~--------~~g-------~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------~--~~~ 220 (319)
+.+|+|+|||+|.++..+. +.. +..+|+.-|+..+.....=+.+...... . .+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5789999999999888772 121 5568899998777655544444321000 0 001
Q ss_pred -eEEEEcCCCCCCCCCCCccEEEecccccCCCCH--------------------------------------HHHHHHHH
Q 020988 221 -LALVRADVCRLPFASGFVDAVHAGAALHCWPSP--------------------------------------SNAASVFS 261 (319)
Q Consensus 221 -i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------------------------~~~l~el~ 261 (319)
+.-+.+.+..-.+++++||+|+++.+|||+.+. ..+++...
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334555556789999999999999998732 23466668
Q ss_pred HhhcCCCeeEEEEe
Q 020988 262 SSYSLLSICYLLQF 275 (319)
Q Consensus 262 rvlk~g~~~g~~~~ 275 (319)
+.|+|||...+.+.
T Consensus 213 ~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 213 AEVKRGGAMFLVCL 226 (374)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEe
Confidence 88888777666555
No 290
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.10 E-value=1e-06 Score=77.79 Aligned_cols=108 Identities=15% Similarity=0.050 Sum_probs=68.7
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEE
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH 242 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~ 242 (319)
...++.+|||+|||.|.|+..+++..+-..|+|+|++.++...+... .. ...++..+..++....+..+++|+|+
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~----~g~~ii~~~~~~dv~~l~~~~~DvVL 161 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TT----LGWNLIRFKDKTDVFNMEVIPGDTLL 161 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB----TTGGGEEEECSCCGGGSCCCCCSEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-cc----CCCceEEeeCCcchhhcCCCCcCEEE
Confidence 45678899999999999999888765555799999986532211100 00 01233444433333344568999999
Q ss_pred ecccccCCCCHH-------HHHHHHHHhhcCC--CeeEEEEee
Q 020988 243 AGAALHCWPSPS-------NAASVFSSSYSLL--SICYLLQFR 276 (319)
Q Consensus 243 ~~~vl~h~~d~~-------~~l~el~rvlk~g--~~~g~~~~~ 276 (319)
|-.+.. ..... .+++-+.++|+|+ |.+-.-+|.
T Consensus 162 SDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 162 CDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp ECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred ecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 987766 44321 2344456788888 776666776
No 291
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.09 E-value=9.5e-06 Score=64.66 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCcC-hHHHHHHh-hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCC-CCccEEE
Q 020988 166 QGGLLVDVSCGSG-LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-GFVDAVH 242 (319)
Q Consensus 166 ~~~~VLDiGcG~G-~~~~~l~~-~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-~~fD~V~ 242 (319)
++++|||||||+| ..+..+++ .+. .|+++|+++..+ .+++.|+.+..... +.||+|+
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av------------------~~v~dDiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHG------------------GIVRDDITSPRMEIYRGAALIY 94 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSST------------------TEECCCSSSCCHHHHTTEEEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCcccc------------------ceEEccCCCCcccccCCcCEEE
Confidence 4689999999999 59999987 665 899999998643 27888988733211 4899998
Q ss_pred ecc
Q 020988 243 AGA 245 (319)
Q Consensus 243 ~~~ 245 (319)
+..
T Consensus 95 sir 97 (153)
T 2k4m_A 95 SIR 97 (153)
T ss_dssp EES
T ss_pred EcC
Confidence 854
No 292
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.01 E-value=6.3e-06 Score=72.73 Aligned_cols=107 Identities=13% Similarity=-0.038 Sum_probs=69.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhh-------CCC-----CeEEEEeCCH---HHHH-----------HHHHHHhhcC----
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKS-------GTY-----SGVVALDFSE---NMLR-----------QCYDFIKQDN---- 214 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~-------g~~-----~~v~gvD~s~---~~l~-----------~a~~~~~~~~---- 214 (319)
.++.+|||||+|+|..+..+.+. .+. .+++++|..+ +.++ .+++.+....
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 45679999999999988776553 442 4899999876 4444 5555544310
Q ss_pred ------c-cCCCCeEEEEcCCCC-CCCCC----CCccEEEecc-cccCCCC--HHHHHHHHHHhhcCCCeeE
Q 020988 215 ------T-ILTSNLALVRADVCR-LPFAS----GFVDAVHAGA-ALHCWPS--PSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 215 ------~-~~~~~i~~~~~d~~~-lp~~~----~~fD~V~~~~-vl~h~~d--~~~~l~el~rvlk~g~~~g 271 (319)
. ....+++++.+|+.+ ++..+ ..||+|+.-. +-...++ ...+++++.++++|+|.+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~ 210 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 210 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEE
Confidence 0 012467889999876 44322 2799999843 2222222 2467889999988876544
No 293
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=98.01 E-value=1.8e-05 Score=71.21 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhc
Q 020988 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213 (319)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~ 213 (319)
|....+.+..... .++..|||++||+|..+..+.+.+. +++|+|+++.+++.|++++...
T Consensus 221 p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 221 PLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence 4455566666554 6789999999999999999999876 9999999999999999998763
No 294
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=98.00 E-value=8.6e-05 Score=72.21 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=99.5
Q ss_pred chhhHHhHHhHHHhhh----hCCCCCcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhC-------------CCC
Q 020988 129 PFVSFLYERGWRQNFN----RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-------------TYS 191 (319)
Q Consensus 129 ~~~s~~~~~~w~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g-------------~~~ 191 (319)
+.+...|+...++.-. .+.|+.|....+.+.+.+.+.++.+|+|-+||+|.|+..+.+.. ...
T Consensus 176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~ 255 (530)
T 3ufb_A 176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES 255 (530)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence 3455566655443221 13589999999999999988889999999999999987765431 123
Q ss_pred eEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----CCCCccEEEecccccCCC---------------C
Q 020988 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAVHAGAALHCWP---------------S 252 (319)
Q Consensus 192 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V~~~~vl~h~~---------------d 252 (319)
.++|+|+++.+...|+-++--.+ .....+..+|....|. ....||+|+++--+.--. +
T Consensus 256 ~i~G~E~~~~~~~la~mNl~lhg---~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~ 332 (530)
T 3ufb_A 256 SIFGGEAKSLPYLLVQMNLLLHG---LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAE 332 (530)
T ss_dssp CEEEECCSHHHHHHHHHHHHHHT---CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCB
T ss_pred hhhhhhccHHHHHHHHHHHHhcC---CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccch
Confidence 69999999999999987664432 2334567788766543 235799999976442111 1
Q ss_pred H-HHHHHHHHHhhc-------CCCeeEEEEe
Q 020988 253 P-SNAASVFSSSYS-------LLSICYLLQF 275 (319)
Q Consensus 253 ~-~~~l~el~rvlk-------~g~~~g~~~~ 275 (319)
. ...++.+.+.|| ++|..++++.
T Consensus 333 ~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 333 TAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp HHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred hHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 1 134566667776 6888888887
No 295
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=97.96 E-value=1.7e-05 Score=73.73 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=56.4
Q ss_pred CCeEEEEcCCcChHHHHHHhh-----------------CCCCeEEEEeCC-----------HHHHHHHHHHHhhcCccCC
Q 020988 167 GGLLVDVSCGSGLFSRKFAKS-----------------GTYSGVVALDFS-----------ENMLRQCYDFIKQDNTILT 218 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~-----------------g~~~~v~gvD~s-----------~~~l~~a~~~~~~~~~~~~ 218 (319)
..+|+|+||++|.++..+... .|..+|+.-|+. +.+.+..++.... .
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~-----~ 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR-----K 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC-----C
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC-----C
Confidence 578999999999998877665 245678899987 4444443332110 1
Q ss_pred CCeEEEEcC---CCCCCCCCCCccEEEecccccCCCCH
Q 020988 219 SNLALVRAD---VCRLPFASGFVDAVHAGAALHCWPSP 253 (319)
Q Consensus 219 ~~i~~~~~d---~~~lp~~~~~fD~V~~~~vl~h~~d~ 253 (319)
.+.-|+.+. +..-.|+++++|+|+++.+|||+.+.
T Consensus 128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~ 165 (384)
T 2efj_A 128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQV 165 (384)
T ss_dssp TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSS
T ss_pred CCceEEEecchhhhhccCCCCceEEEEecceeeecCCC
Confidence 123455554 34456889999999999999998754
No 296
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=97.96 E-value=3.1e-06 Score=62.45 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=40.7
Q ss_pred ccCeeeccCCCccccccCC------------------CCCcccceecCceeeCccCCccccCCceeeecccc
Q 020988 57 EGDLFSCPICYEPLIRKGP------------------TGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~------------------~~~~~~~i~~~~~~C~~Cg~~f~~~~g~~~~~~~~ 110 (319)
..++|+||+|.++|..... .+...+.+..+.+.|+.|++.|++++|++.++...
T Consensus 5 LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~e 76 (97)
T 2k5r_A 5 LLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPEE 76 (97)
T ss_dssp TCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGGG
T ss_pred HhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChHH
Confidence 3578999999998865432 11223344567899999999999999999999653
No 297
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.82 E-value=9.6e-05 Score=65.47 Aligned_cols=110 Identities=11% Similarity=0.027 Sum_probs=72.6
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCCCCCCCccE
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA 240 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~ 240 (319)
....+++.|||+||++|.|+..++....-..|+|+|+-..-.+.= ....+. ....+.+..+ |+..++. .++|+
T Consensus 90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql---~w~lV~~~~~~Dv~~l~~--~~~D~ 163 (321)
T 3lkz_A 90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSY---GWNIVTMKSGVDVFYRPS--ECCDT 163 (321)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBT---TGGGEEEECSCCTTSSCC--CCCSE
T ss_pred cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhc---CCcceEEEeccCHhhCCC--CCCCE
Confidence 445688899999999999999777764445799999965411000 000011 1234788887 8877764 67999
Q ss_pred EEecccccCCCCHH----H---HHHHHHHhhcCC-CeeEEEEeecc
Q 020988 241 VHAGAALHCWPSPS----N---AASVFSSSYSLL-SICYLLQFRYT 278 (319)
Q Consensus 241 V~~~~vl~h~~d~~----~---~l~el~rvlk~g-~~~g~~~~~~~ 278 (319)
|+|--. +--+++. + +|+-+.+.|+++ +.+.+-+|.+|
T Consensus 164 ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY 208 (321)
T 3lkz_A 164 LLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY 208 (321)
T ss_dssp EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred EEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence 999766 7777764 2 344445677777 66666677663
No 298
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=97.80 E-value=5.3e-05 Score=69.92 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=69.6
Q ss_pred HHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc---CCCCeEEEEcCCCCCC-
Q 020988 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP- 232 (319)
Q Consensus 157 ~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~~i~~~~~d~~~lp- 232 (319)
.....+...++.+|||+.+|.|.-+.++++.+....++++|+++.-++..+++++..+.. ...++.+...|...++
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~ 218 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 218 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence 444567788999999999999999999998877678999999999999999888764321 2257888888887764
Q ss_pred CCCCCccEEEe
Q 020988 233 FASGFVDAVHA 243 (319)
Q Consensus 233 ~~~~~fD~V~~ 243 (319)
...+.||.|++
T Consensus 219 ~~~~~fD~VLl 229 (359)
T 4fzv_A 219 LEGDTYDRVLV 229 (359)
T ss_dssp HSTTCEEEEEE
T ss_pred hccccCCEEEE
Confidence 34578999996
No 299
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.71 E-value=0.00037 Score=62.09 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=76.6
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhC-----CCCeEEEEeCCHH--------------------------HHHHHHHHHh
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSEN--------------------------MLRQCYDFIK 211 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g-----~~~~v~gvD~s~~--------------------------~l~~a~~~~~ 211 (319)
....++.|||+|+..|..+..++... +..+++++|..+. .++.++++++
T Consensus 103 ~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~ 182 (282)
T 2wk1_A 103 GNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR 182 (282)
T ss_dssp HTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH
T ss_pred hcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH
Confidence 34567899999999999887776542 3568999996421 3566888887
Q ss_pred hcCccC-CCCeEEEEcCCCC-CC-CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 212 QDNTIL-TSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 212 ~~~~~~-~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
+.+ . ..+++++.+|+.+ +| +++++||+|++-.-. -+.....+..++..+.++|++++-.+
T Consensus 183 ~~g--l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~-----y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 183 NYD--LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL-----YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp HTT--CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS-----HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred HcC--CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc-----cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 653 2 2689999999855 44 345789999986421 13344556666777788888888554
No 300
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.68 E-value=0.00028 Score=60.62 Aligned_cols=110 Identities=16% Similarity=0.094 Sum_probs=70.8
Q ss_pred hhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CCCCCCCCCCCccE
Q 020988 162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA 240 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~ 240 (319)
....++++|||+||++|.|+..++......+|+|+|+-..-.+. -.-........++|.++ |+..++- .++|+
T Consensus 74 ~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~----P~~~~s~gwn~v~fk~gvDv~~~~~--~~~Dt 147 (267)
T 3p8z_A 74 NMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE----PVPMSTYGWNIVKLMSGKDVFYLPP--EKCDT 147 (267)
T ss_dssp TSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC----CCCCCCTTTTSEEEECSCCGGGCCC--CCCSE
T ss_pred cCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC----cchhhhcCcCceEEEeccceeecCC--ccccE
Confidence 34568889999999999999978777544589999996532100 00000112467999999 9876653 67999
Q ss_pred EEecccccCCCCHH----H---HHHHHHHhhcCCCeeEEEEeeccc
Q 020988 241 VHAGAALHCWPSPS----N---AASVFSSSYSLLSICYLLQFRYTK 279 (319)
Q Consensus 241 V~~~~vl~h~~d~~----~---~l~el~rvlk~g~~~g~~~~~~~~ 279 (319)
|+|--.= --+++. + +++-+.+.|++ +.+.+-+|.++.
T Consensus 148 llcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 148 LLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp EEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred EEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 9996543 344443 2 22333445566 566666776665
No 301
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.68 E-value=4e-05 Score=68.08 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=65.4
Q ss_pred ccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
..++.+|||+||++|.|+..+++...-..|+|+|+...+...... ... ...++.....++.-..+..+.+|+|++
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~----~~~~iv~~~~~~di~~l~~~~~DlVls 153 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT----LGWNIVKFKDKSNVFTMPTEPSDTLLC 153 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB----TTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc----cCCceEEeecCceeeecCCCCcCEEee
Confidence 357889999999999999999986444578999997542100000 000 011233333333223344678999999
Q ss_pred cccccCCCCH-------HHHHHHHHHhhcCC-CeeEEEEee
Q 020988 244 GAALHCWPSP-------SNAASVFSSSYSLL-SICYLLQFR 276 (319)
Q Consensus 244 ~~vl~h~~d~-------~~~l~el~rvlk~g-~~~g~~~~~ 276 (319)
..+.. ...+ ..++.-+.++|+++ |.+-.-+|.
T Consensus 154 D~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 154 DIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 76655 4433 12344556788998 776666666
No 302
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=97.65 E-value=3.1e-05 Score=71.44 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCcChHHHHHHhh----------------CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEE---c
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKS----------------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR---A 226 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~----------------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~---~ 226 (319)
...+|+|+||++|.++..+... .|..+|+.-|+..+.....-+.+.... ...+..|+. +
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--~~~~~~f~~gvpg 128 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--DVDGVCFINGVPG 128 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--SCTTCEEEEEEES
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--ccCCCEEEEecch
Confidence 3467999999999877665443 245689999999988888877664311 001223444 4
Q ss_pred CCCCCCCCCCCccEEEecccccCCCCHH---------------------------------HHHHHHHHhhcCCCeeEEE
Q 020988 227 DVCRLPFASGFVDAVHAGAALHCWPSPS---------------------------------NAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 227 d~~~lp~~~~~fD~V~~~~vl~h~~d~~---------------------------------~~l~el~rvlk~g~~~g~~ 273 (319)
.+..-.|+++++|+|+++.+|||+.+.. .+|+.-.+.|+|||...+.
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 5555678899999999999999986522 2266668899999988766
Q ss_pred Ee
Q 020988 274 QF 275 (319)
Q Consensus 274 ~~ 275 (319)
+.
T Consensus 209 ~~ 210 (359)
T 1m6e_X 209 IL 210 (359)
T ss_dssp EE
T ss_pred Ee
Confidence 66
No 303
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=97.47 E-value=0.00015 Score=65.81 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=65.3
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-- 232 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-- 232 (319)
+.+.+.+...+++.++|..||.|..+..+++. ++..+|+|+|.++.+++.++ ++. ..++.++.+++.++.
T Consensus 47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~------~~Rv~lv~~nF~~l~~~ 119 (347)
T 3tka_A 47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID------DPRFSIIHGPFSALGEY 119 (347)
T ss_dssp HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC------CTTEEEEESCGGGHHHH
T ss_pred HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc------CCcEEEEeCCHHHHHHH
Confidence 45566777788999999999999999999987 56779999999999999984 441 357888988887753
Q ss_pred CC----CCCccEEEeccc
Q 020988 233 FA----SGFVDAVHAGAA 246 (319)
Q Consensus 233 ~~----~~~fD~V~~~~v 246 (319)
+. .+++|.|+....
T Consensus 120 L~~~g~~~~vDgILfDLG 137 (347)
T 3tka_A 120 VAERDLIGKIDGILLDLG 137 (347)
T ss_dssp HHHTTCTTCEEEEEEECS
T ss_pred HHhcCCCCcccEEEECCc
Confidence 11 136888887543
No 304
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.39 E-value=0.00037 Score=60.64 Aligned_cols=105 Identities=17% Similarity=0.078 Sum_probs=63.2
Q ss_pred hccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCe---EEEEc-CCCCCCCCCCCc
Q 020988 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL---ALVRA-DVCRLPFASGFV 238 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i---~~~~~-d~~~lp~~~~~f 238 (319)
-..++++|||+||+.|.|+..+++.-.-..|.|.++..+. . ..... ....++ .+.++ |+.+++ ..++
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P~~-~~~~Gv~~i~~~~G~Df~~~~--~~~~ 140 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEPML-MQSYGWNIVTMKSGVDVFYKP--SEIS 140 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCCCC-CCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCCCc-ccCCCceEEEeeccCCccCCC--CCCC
Confidence 3568999999999999999999886211133444443320 0 00000 000243 44447 998754 4689
Q ss_pred cEEEecccccCCCCHH-------HHHHHHHHhhcCCC-eeEEEEeec
Q 020988 239 DAVHAGAALHCWPSPS-------NAASVFSSSYSLLS-ICYLLQFRY 277 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~-------~~l~el~rvlk~g~-~~g~~~~~~ 277 (319)
|+|+|-.+-. ..++. .++.-+.++|+++| .+-+-+|..
T Consensus 141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 9999965443 33321 23545567899998 777777764
No 305
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=97.36 E-value=0.00059 Score=60.01 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
|....+.+.+... .++..|||..||+|..+..+.+.+. +++|+|+++..++.++++++.
T Consensus 198 p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 198 PRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp CHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHh
Confidence 4445555555543 6789999999999999999999876 999999999999999999865
No 306
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.33 E-value=0.0004 Score=64.17 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=60.0
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCc-----cCCCCeEEEEcCCCCC----CCCC
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-----ILTSNLALVRADVCRL----PFAS 235 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~~i~~~~~d~~~l----p~~~ 235 (319)
.++.+||=||.|.|..++++.+.. ..+|+.+|+++.+++.+++.+..... ...++++++.+|.... .-..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 356899999999999999999875 47899999999999999998643110 1124688999987542 1134
Q ss_pred CCccEEEec
Q 020988 236 GFVDAVHAG 244 (319)
Q Consensus 236 ~~fD~V~~~ 244 (319)
+.||+|+.-
T Consensus 283 ~~yDvIIvD 291 (381)
T 3c6k_A 283 REFDYVIND 291 (381)
T ss_dssp CCEEEEEEE
T ss_pred CceeEEEEC
Confidence 689999974
No 307
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=97.30 E-value=0.00087 Score=61.59 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=55.7
Q ss_pred HHHHHHHhhcc------CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988 155 FKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228 (319)
Q Consensus 155 ~~~l~~~l~~~------~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (319)
.+.+.+.+... ++..|||||.|.|.++..+.+.....+|+++|+++.++...++.. . ..+++++.+|+
T Consensus 41 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii~~D~ 114 (353)
T 1i4w_A 41 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQILKRDP 114 (353)
T ss_dssp HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEECSCT
T ss_pred HHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEEECCc
Confidence 34455555443 358999999999999999998732348999999999999998876 2 35899999999
Q ss_pred CCC
Q 020988 229 CRL 231 (319)
Q Consensus 229 ~~l 231 (319)
..+
T Consensus 115 l~~ 117 (353)
T 1i4w_A 115 YDW 117 (353)
T ss_dssp TCH
T ss_pred cch
Confidence 654
No 308
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=96.92 E-value=0.0006 Score=44.04 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=25.2
Q ss_pred ccCeeeccCCCc-cccccCCCCCcccceecCceeeCccCCccc
Q 020988 57 EGDLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 57 ~~~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
....+.||.|++ +|..... .+.+.|..||..|.
T Consensus 2 ~~~~~~CP~C~~~~l~~d~~---------~gelvC~~CG~v~~ 35 (50)
T 1pft_A 2 VNKQKVCPACESAELIYDPE---------RGEIVCAKCGYVIE 35 (50)
T ss_dssp CSSCCSCTTTSCCCEEEETT---------TTEEEESSSCCBCC
T ss_pred CCccEeCcCCCCcceEEcCC---------CCeEECcccCCccc
Confidence 456789999999 7755432 36789999999984
No 309
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=96.74 E-value=0.00037 Score=78.96 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=53.2
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCC-----CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CCCCCCc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFV 238 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~f 238 (319)
.+..+|||||.|+|..+..+.+... ..+++.+|+|+...+.++++++.. ++..-..|.... ++..++|
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~y 1312 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKA 1312 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----C
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCce
Confidence 3567999999999987665544421 347899999998888888776542 333322344332 3455789
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
|+|++.+++|-.++....+++++++|||+|..-+
T Consensus 1313 dlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~ 1346 (2512)
T 2vz8_A 1313 DLLVCNCALATLGDPAVAVGNMAATLKEGGFLLL 1346 (2512)
T ss_dssp CEEEEECC--------------------CCEEEE
T ss_pred eEEEEcccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999888889999999999999985433
No 310
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=96.52 E-value=0.034 Score=50.56 Aligned_cols=106 Identities=11% Similarity=0.159 Sum_probs=72.0
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCcc------------------C
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------------L 217 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~------------------~ 217 (319)
+.+.+++...+...|+.+|||.......+...++...++-||. |++++.-++.+.+.+.. .
T Consensus 87 ~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~ 165 (334)
T 1rjd_A 87 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID 165 (334)
T ss_dssp HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred HHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccC
Confidence 3444455445668999999999999888887655567888888 77777777776553100 1
Q ss_pred CCCeEEEEcCCCCCCC---------CCCCccEEEecccccCCCCHHHHHHHHHHh
Q 020988 218 TSNLALVRADVCRLPF---------ASGFVDAVHAGAALHCWPSPSNAASVFSSS 263 (319)
Q Consensus 218 ~~~i~~~~~d~~~lp~---------~~~~fD~V~~~~vl~h~~d~~~~l~el~rv 263 (319)
..+..++.+|+.+... ......++++-.++.++ +++...+-+..+
T Consensus 166 ~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-~~~~~~~ll~~i 219 (334)
T 1rjd_A 166 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-HNNESQLLINTI 219 (334)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHH
T ss_pred CCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC-CHHHHHHHHHHH
Confidence 3678999999987421 22456788888899998 455443333333
No 311
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=96.45 E-value=0.013 Score=52.01 Aligned_cols=105 Identities=7% Similarity=-0.011 Sum_probs=67.7
Q ss_pred HHHHHHhhc-----cCCCeEEEEcC------CcChHHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEE
Q 020988 156 KMAQEYFKS-----AQGGLLVDVSC------GSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLAL 223 (319)
Q Consensus 156 ~~l~~~l~~-----~~~~~VLDiGc------G~G~~~~~l~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~ 223 (319)
..+.+++.. +.+.+|||+|+ ..|.+ .+++.++. ..|+++|+.+-.. ..+ .+
T Consensus 94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s--------------da~-~~ 156 (344)
T 3r24_A 94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS--------------DAD-ST 156 (344)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC--------------SSS-EE
T ss_pred HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc--------------CCC-eE
Confidence 456666632 46899999996 56663 34445664 4899999977310 123 45
Q ss_pred EEcCCCCCCCCCCCccEEEeccccc---CC--C-----C-HHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 224 VRADVCRLPFASGFVDAVHAGAALH---CW--P-----S-PSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 224 ~~~d~~~lp~~~~~fD~V~~~~vl~---h~--~-----d-~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
+++|...+.. .++||+|++-.+-. +. . . -+.++.-+.++|++||.+-+-+|...
T Consensus 157 IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs 221 (344)
T 3r24_A 157 LIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 221 (344)
T ss_dssp EESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred EEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence 9999766543 47899999843211 11 1 1 23445556778999988888888443
No 312
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=96.09 E-value=0.0093 Score=54.52 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=69.1
Q ss_pred CCeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC---CCCCccEEE
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVH 242 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V~ 242 (319)
..+|||+-||.|.+...+.+.|. ...|.++|+++.+++..+.++. +..++.+|+.++.. +...+|+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~--------~~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP--------HTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc--------ccccccCCHHHccHhHcCcCCcCEEE
Confidence 35899999999999999999873 2469999999999999888753 34567888887642 112689999
Q ss_pred eccccc---------CCCCHH-HHHHHHHHhhcCCC--eeEEEE
Q 020988 243 AGAALH---------CWPSPS-NAASVFSSSYSLLS--ICYLLQ 274 (319)
Q Consensus 243 ~~~vl~---------h~~d~~-~~l~el~rvlk~g~--~~g~~~ 274 (319)
...--. ...|+. .++.++.++++..+ |-.+++
T Consensus 74 ~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ 117 (343)
T 1g55_A 74 MSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILL 117 (343)
T ss_dssp ECCC------------------CHHHHHHHHGGGCSSCCSEEEE
T ss_pred EcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEE
Confidence 864311 122222 35667778887777 665554
No 313
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=95.94 E-value=0.039 Score=51.01 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=72.1
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC--------CCCCcc
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------ASGFVD 239 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------~~~~fD 239 (319)
.++||+-||.|.++..+.+.|. ..+.++|+++.+++..+.++ ++..++.+|+.++.. ....+|
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N~--------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D 73 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINF--------PRSLHVQEDVSLLNAEIIKGFFKNDMPID 73 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHC--------TTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHhC--------CCCceEecChhhcCHHHHHhhcccCCCee
Confidence 5899999999999999999885 45679999999988887764 356788899887641 246799
Q ss_pred EEEecccccC--------CCCH-HHHHHHHHHhhcCCCeeEEEEeec
Q 020988 240 AVHAGAALHC--------WPSP-SNAASVFSSSYSLLSICYLLQFRY 277 (319)
Q Consensus 240 ~V~~~~vl~h--------~~d~-~~~l~el~rvlk~g~~~g~~~~~~ 277 (319)
+|+...--.. ..|+ ..++.++.++++..+|-.+++=.+
T Consensus 74 ~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV 120 (376)
T 3g7u_A 74 GIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENV 120 (376)
T ss_dssp EEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEEC
T ss_pred EEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecc
Confidence 9997542111 1222 245677777777777766555433
No 314
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=95.66 E-value=0.0014 Score=45.79 Aligned_cols=40 Identities=28% Similarity=0.583 Sum_probs=22.7
Q ss_pred cCeeeccCCCccccccCC--CCC---ccc-----------ceecCceeeCccCCcc
Q 020988 58 GDLFSCPICYEPLIRKGP--TGL---TLG-----------AIYRSGFKCRKCDKTY 97 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~--~~~---~~~-----------~i~~~~~~C~~Cg~~f 97 (319)
-+|-.||+||++|...+- ..+ +.. .+..-.+.|+.||..|
T Consensus 6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEF 61 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEF 61 (95)
T ss_dssp --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEE
T ss_pred cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHH
Confidence 468899999997643100 000 111 1122278999999987
No 315
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=95.50 E-value=0.028 Score=50.84 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhh
Q 020988 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 151 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
|....+.+.... ..++..|||.-||+|..+..+.+.+. +.+|+|+++..++.+++++..
T Consensus 238 p~~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 238 PAKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp CTHHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred CHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 344555555544 46789999999999999999998876 999999999999999998754
No 316
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=95.40 E-value=0.041 Score=51.48 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=47.6
Q ss_pred ccCCCeEEEEcCCcChHHHHHH-hhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCC-CCeEEEEc
Q 020988 164 SAQGGLLVDVSCGSGLFSRKFA-KSGT-YSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRA 226 (319)
Q Consensus 164 ~~~~~~VLDiGcG~G~~~~~l~-~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~i~~~~~ 226 (319)
..++..++|||++.|.++..++ +.++ ..+|+++|+++...+..+++++....... .++.++..
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~ 289 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 289 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence 3678999999999999999887 5544 36999999999999999998876100012 46666554
No 317
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=95.36 E-value=0.0063 Score=46.86 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=23.9
Q ss_pred ceecCceeeCccCCccccCCceeeeccc
Q 020988 82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI 109 (319)
Q Consensus 82 ~i~~~~~~C~~Cg~~f~~~~g~~~~~~~ 109 (319)
.|..+.+.|++|||.|++++|+++.+..
T Consensus 94 ~V~EG~L~Cp~cgr~ypI~~GIPNm~~~ 121 (125)
T 3q87_A 94 DVVEGSLRCDMCGLIYPIKGSIVETVDT 121 (125)
T ss_dssp EEEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred EEEEEEEECCCCCCEeeccCCcccHHHh
Confidence 3455889999999999999999999743
No 318
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=95.20 E-value=0.048 Score=49.22 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCH---HHHHHHHHHHhh
Q 020988 150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE---NMLRQCYDFIKQ 212 (319)
Q Consensus 150 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~---~~l~~a~~~~~~ 212 (319)
-|....+.+.... ..++..|||.-||+|..+..+.+.+. +.+|+|+++ ..++.+++|+..
T Consensus 227 kp~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 227 KPAAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp CCHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHH
Confidence 3455556665554 36789999999999999999999876 999999999 999999998754
No 319
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=95.07 E-value=0.094 Score=47.47 Aligned_cols=104 Identities=9% Similarity=0.046 Sum_probs=73.3
Q ss_pred CCeEEEEcCCcChHHHHHHhhCC-CCeE-EEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC---CCCCccEE
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGT-YSGV-VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAV 241 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~-~~~v-~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V 241 (319)
..+++|+-||.|.+...+.+.|. ...+ .++|+++.+++.-+.++.. . ++.+|+.++.. +...+|++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~-~~~~DI~~~~~~~i~~~~~Dil 80 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E-VQVKNLDSISIKQIESLNCNTW 80 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C-cccCChhhcCHHHhccCCCCEE
Confidence 46899999999999999998874 2356 7999999999888887632 1 56788887742 22368999
Q ss_pred Eeccccc-----------CCCCHH-HHHHHHHH-hhcCC--CeeEEEEeeccc
Q 020988 242 HAGAALH-----------CWPSPS-NAASVFSS-SYSLL--SICYLLQFRYTK 279 (319)
Q Consensus 242 ~~~~vl~-----------h~~d~~-~~l~el~r-vlk~g--~~~g~~~~~~~~ 279 (319)
+.+.--. ...|+. .++.++.+ +++.. .|-.+++=.+..
T Consensus 81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~g 133 (327)
T 3qv2_A 81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPL 133 (327)
T ss_dssp EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGG
T ss_pred EecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhh
Confidence 9754211 223444 56788888 88877 676655544443
No 320
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=95.00 E-value=0.022 Score=50.36 Aligned_cols=103 Identities=7% Similarity=-0.060 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CC---CCCCCccEE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP---FASGFVDAV 241 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp---~~~~~fD~V 241 (319)
.+..+||+=+|+|.++..+.+.+ .+++.+|.++..++..+++++. ..+++++..|... +. -+...||+|
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdLV 163 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGLI 163 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred cCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence 45779999999999999999855 5999999999999998888754 3579999999644 21 233579999
Q ss_pred EecccccCCCCHHHHHHHHHH--hhcCCCeeEEEEe
Q 020988 242 HAGAALHCWPSPSNAASVFSS--SYSLLSICYLLQF 275 (319)
Q Consensus 242 ~~~~vl~h~~d~~~~l~el~r--vlk~g~~~g~~~~ 275 (319)
++---.+.-.+..++++.+.+ .+.+.|..-+++.
T Consensus 164 fiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 164 FIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp EECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 997766644456666666666 4456776666665
No 321
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.60 E-value=0.013 Score=37.59 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=24.1
Q ss_pred ccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.+....--||.||+++..... ...+.|..||.++
T Consensus 14 kv~~~~k~CP~CG~~~fm~~~---------~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 14 KVIRKNKFCPRCGPGVFMADH---------GDRWACGKCGYTE 47 (50)
T ss_dssp CEECSSEECSSSCSSCEEEEC---------SSEEECSSSCCEE
T ss_pred EEEEecccCCCCCCceEEecC---------CCeEECCCCCCEE
Confidence 455556679999996543321 2678999999986
No 322
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=94.57 E-value=0.011 Score=42.24 Aligned_cols=30 Identities=23% Similarity=0.627 Sum_probs=23.3
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+.||.|+..+..... .+.+.|+.|++.|
T Consensus 26 ~~y~Cp~CG~~~v~r~a---------tGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKF 55 (83)
T ss_dssp SCEECSSSCCEEEEEEE---------TTEEEETTTCCEE
T ss_pred ccCcCCCCCCcceeccC---------CCeEECCCCCCEe
Confidence 46899999997654322 3789999999987
No 323
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=94.46 E-value=0.016 Score=38.28 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=24.8
Q ss_pred ccccCeeeccCCCccc-cccCCCCCcccceecCceeeCccCCcccc
Q 020988 55 ELEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 55 ~~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
+++.....||.|+..- ........+.++.+...+.|.+||+.+..
T Consensus 10 ~~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 10 TLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp SSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred cCCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 3444468899999831 11100011112223357899999998743
No 324
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=94.12 E-value=0.023 Score=43.57 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=27.0
Q ss_pred cccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
..++..+-.||.|++.....+. ..+.|+.|+|.|.
T Consensus 21 g~~M~~lP~CP~C~seytYeDg----------~l~vCPeC~hEW~ 55 (138)
T 2akl_A 21 GHMVSTLPPCPQCNSEYTYEDG----------ALLVCPECAHEWS 55 (138)
T ss_dssp --CCCCSCCCTTTCCCCCEECS----------SSEEETTTTEEEC
T ss_pred ccccccCCCCCCCCCcceEecC----------CeEECCccccccC
Confidence 3455567889999998876653 6799999999994
No 325
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=94.08 E-value=1 Score=40.25 Aligned_cols=116 Identities=14% Similarity=0.077 Sum_probs=71.2
Q ss_pred HHHHHHhhccCCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (319)
Q Consensus 156 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 232 (319)
+.+..++.. ....|+++|||-=.....+.. ....+++=+| .|..++..++.+.+.+.....+..++.+|+.+ .
T Consensus 93 ~~v~~~~~~-g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~ 168 (310)
T 2uyo_A 93 TYFNNAVID-GIRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPP 168 (310)
T ss_dssp HHHHHHHHT-TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHH
T ss_pred HHHHHHHHh-CCCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHH
Confidence 344444432 235799999998777555542 1236899999 59999999988864322234678899999976 3
Q ss_pred ------CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEee
Q 020988 233 ------FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFR 276 (319)
Q Consensus 233 ------~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~ 276 (319)
+....--++++-++++++++ +...+-+..+.....++..++++
T Consensus 169 ~l~~~g~d~~~Pt~~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d 217 (310)
T 2uyo_A 169 ALRSAGFDPSARTAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVE 217 (310)
T ss_dssp HHHHTTCCTTSCEEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHhccCCCCCCEEEEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEE
Confidence 11223456777789999965 33333333333333344555553
No 326
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=93.85 E-value=0.031 Score=37.04 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=21.6
Q ss_pred CeeeccCCCc-cccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..+.||.|++ ++..... .+.+.|..||.++
T Consensus 10 ~~~~Cp~C~~~~lv~D~~---------~ge~vC~~CGlVl 40 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYR---------AGDMICPECGLVV 40 (58)
T ss_dssp SCCSBTTBSSSCCEECSS---------SCCEECTTTCCEE
T ss_pred ccccCcCCCCCceeEeCC---------CCeEEeCCCCCEE
Confidence 3457999998 5544321 3678999999987
No 327
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=93.83 E-value=0.24 Score=45.80 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCcChHHHHHHhhC-------CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g-------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (319)
.+-.|+|+|.|+|.++..+.+.. ...+++.||+|+...+.-++++... .++.+.. ++.++|- . .
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-----~~v~W~~-~l~~lp~--~-~ 150 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWHD-SFEDVPE--G-P 150 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEES-SGGGSCC--S-S
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-----CCeEEeC-ChhhcCC--C-C
Confidence 34579999999999988776541 2348999999999888777766442 2465542 4555552 2 4
Q ss_pred cEEEecccccCCC
Q 020988 239 DAVHAGAALHCWP 251 (319)
Q Consensus 239 D~V~~~~vl~h~~ 251 (319)
-+|+++.+|..+|
T Consensus 151 ~~viANE~fDAlP 163 (387)
T 1zkd_A 151 AVILANEYFDVLP 163 (387)
T ss_dssp EEEEEESSGGGSC
T ss_pred eEEEeccccccCc
Confidence 5788888887776
No 328
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=93.54 E-value=0.16 Score=45.94 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=67.6
Q ss_pred CCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEecc
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA 245 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~ 245 (319)
+.++||+.||.|.+...+.+.|. ..+.++|+++.+++..+.+.... ..+|+.++... -..+|+|+...
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~----------~~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK----------PEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC----------CBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCC----------CcCCHHHcCHhhCCCCCEEEECC
Confidence 57899999999999999998875 46889999999999888886431 15777765421 13589999753
Q ss_pred cccC---------CCCHH-HHHHHHHHhhcCCCeeEEEEeecc
Q 020988 246 ALHC---------WPSPS-NAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 246 vl~h---------~~d~~-~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
--.. +.|+. .++.++.|+++..+|-.+++=.+.
T Consensus 80 PCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~ 122 (327)
T 2c7p_A 80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVK 122 (327)
T ss_dssp CCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred CCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEeCcH
Confidence 1111 12332 356667776666666554443333
No 329
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=93.31 E-value=0.18 Score=46.65 Aligned_cols=99 Identities=12% Similarity=0.000 Sum_probs=62.1
Q ss_pred HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C-----
Q 020988 160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P----- 232 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p----- 232 (319)
......++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++. +.+++..+-.+. .
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~~~~ 248 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----------GFETIDLRNSAPLRDQIDQ 248 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----------TCEEEETTSSSCHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----------CCcEEcCCCcchHHHHHHH
Confidence 345567899999999986 88888888763323899999999988877642 223332211111 0
Q ss_pred C-CCCCccEEEeccccc---------CCCCHHHHHHHHHHhhcCCCe
Q 020988 233 F-ASGFVDAVHAGAALH---------CWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 233 ~-~~~~fD~V~~~~vl~---------h~~d~~~~l~el~rvlk~g~~ 269 (319)
. ....+|+|+-.-.-. |. ++...+++..++++++|.
T Consensus 249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gG~ 294 (398)
T 2dph_A 249 ILGKPEVDCGVDAVGFEAHGLGDEANTE-TPNGALNSLFDVVRAGGA 294 (398)
T ss_dssp HHSSSCEEEEEECSCTTCBCSGGGTTSB-CTTHHHHHHHHHEEEEEE
T ss_pred HhCCCCCCEEEECCCCcccccccccccc-ccHHHHHHHHHHHhcCCE
Confidence 0 123699998654322 11 123457777788777654
No 330
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=93.26 E-value=0.45 Score=43.81 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=64.7
Q ss_pred HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-CC------
Q 020988 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP------ 232 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp------ 232 (319)
.....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++. +.+.+...-.+ +.
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHH
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----------CCcEEccCCcchHHHHHHHH
Confidence 34567889999999876 88888888874334799999999988888652 22333221111 00
Q ss_pred CCCCCccEEEecccc---------cCCCCHHHHHHHHHHhhcCCCee
Q 020988 233 FASGFVDAVHAGAAL---------HCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl---------~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
.....+|+|+-.-.- .|.+++...+++..++++++|..
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~i 296 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKI 296 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEE
T ss_pred hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEE
Confidence 012469999875432 13345556778888888876544
No 331
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=92.92 E-value=0.16 Score=45.18 Aligned_cols=98 Identities=11% Similarity=-0.051 Sum_probs=66.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhCCCCe-EEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC----CCCcc
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SGFVD 239 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~----~~~fD 239 (319)
....+++|+=||.|.+...+.+.|.... |.++|+++.+++.-+.+. ++..++.+|+.++... ...+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~--------~~~~~~~~DI~~i~~~~i~~~~~~D 85 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH--------QGKIMYVGDVRSVTQKHIQEWGPFD 85 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT--------TTCEEEECCGGGCCHHHHHHTCCCS
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC--------CCCceeCCChHHccHHHhcccCCcC
Confidence 4567899999999999999999886333 699999999887776654 2446788898876421 13699
Q ss_pred EEEecc-----cccC-----CCCHH-HHHHHHHHhhcCCCee
Q 020988 240 AVHAGA-----ALHC-----WPSPS-NAASVFSSSYSLLSIC 270 (319)
Q Consensus 240 ~V~~~~-----vl~h-----~~d~~-~~l~el~rvlk~g~~~ 270 (319)
+|+... +.-. +.|+. .++.++.|+++..+|-
T Consensus 86 ll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~ 127 (295)
T 2qrv_A 86 LVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPK 127 (295)
T ss_dssp EEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred EEEecCCCccccccCccccccccccchhHHHHHHHHHHhCcc
Confidence 999753 2211 33332 4566666666555444
No 332
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=92.69 E-value=0.29 Score=45.85 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=37.0
Q ss_pred CCeEEEEcCCcChHHHHHHhhC----C-CCeEEEEeCCHHHHHHHHHHHhh
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSG----T-YSGVVALDFSENMLRQCYDFIKQ 212 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g----~-~~~v~gvD~s~~~l~~a~~~~~~ 212 (319)
...|+|+|.|+|.++..+.+.. + ..+++.||+|+.+.+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 4799999999999887776542 1 24799999999998888888764
No 333
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=92.64 E-value=0.14 Score=46.53 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=70.9
Q ss_pred CeEEEEcCCcChHHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---CCCCCccEEEe
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHA 243 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~ 243 (319)
.+++|+-||.|.+...+.+.|. ...+.++|+++.+++.-+.++. ...++.+|+.++. ++...+|+++.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~--------~~~~~~~DI~~~~~~~~~~~~~D~l~g 75 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP--------ETNLLNRNIQQLTPQVIKKWNVDTILM 75 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC--------CCceeccccccCCHHHhccCCCCEEEe
Confidence 4799999999999999988874 2358899999998888877652 3446778887764 22236899986
Q ss_pred ccc---c------cCCCCHH-HHHHHHHHhhcCCC-eeEEEEeeccc
Q 020988 244 GAA---L------HCWPSPS-NAASVFSSSYSLLS-ICYLLQFRYTK 279 (319)
Q Consensus 244 ~~v---l------~h~~d~~-~~l~el~rvlk~g~-~~g~~~~~~~~ 279 (319)
+.- + ....|+. .++.++.++++..+ |-.+++=.+..
T Consensus 76 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~g 122 (333)
T 4h0n_A 76 SPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKG 122 (333)
T ss_dssp CCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTT
T ss_pred cCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchh
Confidence 431 1 1223332 45677888887775 66555443333
No 334
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.043 Score=43.09 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=24.4
Q ss_pred eecCceeeCccCCccccCCceeeecccc
Q 020988 83 IYRSGFKCRKCDKTYSSKDNYLDLTVIS 110 (319)
Q Consensus 83 i~~~~~~C~~Cg~~f~~~~g~~~~~~~~ 110 (319)
+..+.+.|++||+.|++++|+++++...
T Consensus 105 v~eg~L~C~~cg~~YPI~dGIP~mL~~e 132 (141)
T 2j6a_A 105 IAEGEMKCRNCGHIYYIKNGIPNLLLPP 132 (141)
T ss_dssp EEEEEEECTTTCCEEEEETTEESSCCCS
T ss_pred ccCCEEECCCCCCcccccCCccCcCCcH
Confidence 4457899999999999999999998654
No 335
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=92.22 E-value=0.59 Score=41.82 Aligned_cols=103 Identities=13% Similarity=0.174 Sum_probs=73.2
Q ss_pred CeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-CCCccEEEecc-
Q 020988 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA- 245 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~- 245 (319)
.+|||+=||.|.+..-+.+.|. .-+.++|+++.+++.-+.+. .-.++.+|+.++... -..+|+|+.+.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~ggpP 70 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPP 70 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred CeEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEecCC
Confidence 4799999999999999988885 45779999999888777764 235788999877422 24689998643
Q ss_pred ----cc----cCCCCHH-HHHHHHHHhhcCCCeeEEEEeeccch
Q 020988 246 ----AL----HCWPSPS-NAASVFSSSYSLLSICYLLQFRYTKI 280 (319)
Q Consensus 246 ----vl----~h~~d~~-~~l~el~rvlk~g~~~g~~~~~~~~~ 280 (319)
+. ..+.|+. .++.++.|+++..+|-.+++=.+..+
T Consensus 71 CQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl 114 (331)
T 3ubt_Y 71 SQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGM 114 (331)
T ss_dssp GGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGG
T ss_pred CCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeeccc
Confidence 11 1244554 67788888887777776655544444
No 336
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=92.03 E-value=0.067 Score=34.23 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=23.1
Q ss_pred cCeeeccCCCccccc-cCCCCCcccceecCceeeCccCCccc
Q 020988 58 GDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
.....||.|+..-.. ......+.++-+.-.+.|.+|||.|.
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 456789999983110 00011122222335789999999873
No 337
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=91.74 E-value=0.092 Score=36.15 Aligned_cols=30 Identities=23% Similarity=0.692 Sum_probs=22.0
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+.||.|+..-..... .+++.|..|+..|
T Consensus 25 ~ky~C~fCgk~~vkR~a---------~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGA---------AGIWTCSCCKKTV 54 (72)
T ss_dssp SCBCCSSCCSSCBSBCS---------SSCBCCSSSCCCC
T ss_pred cCccCCCCCCceeEecC---------CCeEECCCCCCEE
Confidence 35789999985433221 3789999999987
No 338
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=91.64 E-value=0.069 Score=40.23 Aligned_cols=29 Identities=31% Similarity=0.762 Sum_probs=22.3
Q ss_pred CeeeccCCCc-cccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+.||.|+. .+.+.. .+++.|..|+..|
T Consensus 59 akytCPfCGk~~vKR~a----------vGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQG----------TGIWQCSYCDYKF 88 (116)
T ss_dssp SCEECSSSCCEEEEEEE----------TTEEEETTTCCEE
T ss_pred cCCcCCCCCCceeEecC----------ceeEECCCCCCEE
Confidence 5689999998 343333 2789999999987
No 339
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.62 E-value=0.069 Score=37.86 Aligned_cols=29 Identities=24% Similarity=0.753 Sum_probs=21.4
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
-+.||.|+..-.... ..+++.|..|+..|
T Consensus 35 ky~CpfCGk~~vkR~---------a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 35 KHTCPVCGRKAVKRI---------STGIWQCQKCGATF 63 (83)
T ss_dssp CBCCSSSCSSCEEEE---------ETTEEEETTTCCEE
T ss_pred ccCCCCCCCceeEec---------CcCeEEcCCCCCEE
Confidence 578999998532221 13789999999987
No 340
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=91.37 E-value=0.12 Score=33.80 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=25.2
Q ss_pred cccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..+...+..||.||+.+..... .+.+.|..|+.++
T Consensus 12 gki~~~~~fCPkCG~~~~ma~~---------~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 12 GKLVRKHRFCPRCGPGVFLAEH---------ADRYSCGRCGYTE 46 (55)
T ss_dssp CCCCCSSCCCTTTTTTCCCEEC---------SSEEECTTTCCCE
T ss_pred CEEEEccccCcCCCCceeEecc---------CCEEECCCCCCEE
Confidence 3466678889999996543211 2578999999886
No 341
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=91.23 E-value=0.64 Score=42.33 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=57.6
Q ss_pred hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-----CCCC
Q 020988 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFAS 235 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~ 235 (319)
....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.- . . .++..+-.++ ...+
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lG-------a-~-~vi~~~~~~~~~~~~~~~~ 256 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG-------A-T-HVINSKTQDPVAAIKEITD 256 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT-------C-S-EEEETTTSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcC-------C-C-EEecCCccCHHHHHHHhcC
Confidence 4456889999999986 788888877632236999999999888887541 1 1 1222211111 0112
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
+.+|+|+-. ... ...+++..++++++|.
T Consensus 257 gg~D~vid~-----~g~-~~~~~~~~~~l~~~G~ 284 (371)
T 1f8f_A 257 GGVNFALES-----TGS-PEILKQGVDALGILGK 284 (371)
T ss_dssp SCEEEEEEC-----SCC-HHHHHHHHHTEEEEEE
T ss_pred CCCcEEEEC-----CCC-HHHHHHHHHHHhcCCE
Confidence 379999754 222 2346667777766654
No 342
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=90.95 E-value=0.086 Score=38.08 Aligned_cols=29 Identities=17% Similarity=0.517 Sum_probs=21.2
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
-+.||.|+..-.... ..+++.|..|+..|
T Consensus 36 ky~CpfCgk~~vkR~---------a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 36 KYFCEFCGKFAVKRK---------AVGIWGCKDCGKVK 64 (92)
T ss_dssp CBCCTTTCSSCBEEE---------ETTEEECSSSCCEE
T ss_pred cccCcccCCCeeEec---------CcceEEcCCCCCEE
Confidence 468999998532221 13789999999987
No 343
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=90.78 E-value=0.12 Score=37.49 Aligned_cols=26 Identities=27% Similarity=0.713 Sum_probs=21.3
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..||.|+++|.+.+ +.+.|..|+..|
T Consensus 33 ~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f 58 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-----------GHARCRSCGEFI 58 (101)
T ss_dssp CBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred ccCccCCCcceecC-----------CEEECccccchh
Confidence 78999999998764 556788888877
No 344
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=90.78 E-value=2.3 Score=36.83 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=68.8
Q ss_pred cCCCeEEEEcCCcChHHHHHHhh-------CCCCeEEEEe-----CCHH-------------------HHHHHHHHHh--
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALD-----FSEN-------------------MLRQCYDFIK-- 211 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~-------g~~~~v~gvD-----~s~~-------------------~l~~a~~~~~-- 211 (319)
.-++.|+|+|+-.|..+..++.. ++..+++|+| +.+. ..+..++.+.
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 34679999999999977775542 4567999999 3221 0111111111
Q ss_pred -hc-CccC-CCCeEEEEcCCCC-CC-----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEEEeecc
Q 020988 212 -QD-NTIL-TSNLALVRADVCR-LP-----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLLQFRYT 278 (319)
Q Consensus 212 -~~-~~~~-~~~i~~~~~d~~~-lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~~~~~~ 278 (319)
.. .... ..+++++.|++.+ +| .+..+||+|++-.-. .......+..++..+.++|++++..+
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-----Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-----YEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-----HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-----cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 00 0111 3789999999865 33 235679999886421 23445566667777888999999665
No 345
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.77 E-value=0.24 Score=37.41 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=27.8
Q ss_pred ccccccCeeeccCCCccc-cccCCCCCcccceecCceeeCccCCccc
Q 020988 53 TLELEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 53 ~~~~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
.++++..-..||.|+..- ........+.++-....+.|.+|||.|.
T Consensus 65 ~~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 65 DPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp CSSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred cccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 456666668999999831 1111112222333445789999999874
No 346
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=90.57 E-value=0.077 Score=36.73 Aligned_cols=29 Identities=31% Similarity=0.724 Sum_probs=22.1
Q ss_pred CeeeccCCCcc-ccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-..||.|+.. +.+.. .+++.|..|+..|
T Consensus 26 ~ky~C~fCgk~~vkR~a----------~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRAS----------TSIWVCGHCGYKI 55 (73)
T ss_pred cCccCCCCCCceeEEEE----------eEEEECCCCCcEE
Confidence 46789999983 43332 2789999999987
No 347
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=90.42 E-value=0.093 Score=38.59 Aligned_cols=30 Identities=23% Similarity=0.710 Sum_probs=21.8
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+.||.|+..-.... ..+++.|..|+..|
T Consensus 35 aky~CpfCgk~~vKR~---------a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 35 AKYGCPFCGKVAVKRA---------AVGIWKCKPCKKII 64 (103)
T ss_dssp SCEECTTTCCEEEEEE---------ETTEEEETTTTEEE
T ss_pred cCCCCCCCCCceeeec---------CcceEEcCCCCCEE
Confidence 3578999998533221 13789999999987
No 348
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=90.22 E-value=0.1 Score=37.64 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=21.6
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.-+.||.|+..-.... ..+++.|..|+..|
T Consensus 35 ~ky~CpfCgk~~vkR~---------a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRG---------AAGIWTCSCCKKTV 64 (92)
T ss_dssp SCCCCSSSCSSCCEEE---------ETTEEECTTTCCEE
T ss_pred cCCcCCCCCCceeeec---------ccceEEcCCCCCEE
Confidence 3578999998532221 13789999999987
No 349
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=90.16 E-value=0.15 Score=35.13 Aligned_cols=30 Identities=30% Similarity=0.652 Sum_probs=22.0
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
++.|| |+..+..... .....|+ ||......
T Consensus 4 vv~C~-C~~~~~~~~~---------~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 4 IFRCD-CGRALYSREG---------AKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEET-TSCCEEEETT---------CSEEEET-TTEEEECC
T ss_pred EEECC-CCCEEEEcCC---------CcEEECC-CCCeeeec
Confidence 67899 9997655442 2567899 99988543
No 350
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=89.96 E-value=0.2 Score=33.51 Aligned_cols=30 Identities=17% Similarity=0.485 Sum_probs=22.9
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCccc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
-.+.|..|+....... ....+|+.||+...
T Consensus 20 v~Y~C~~Cg~~~~l~~----------~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 20 MIYLCADCGARNTIQA----------KEVIRCRECGHRVM 49 (63)
T ss_dssp CCCBCSSSCCBCCCCS----------SSCCCCSSSCCCCC
T ss_pred eEEECCCCCCeeecCC----------CCceECCCCCcEEE
Confidence 4689999999765442 25689999999763
No 351
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=89.69 E-value=0.27 Score=40.39 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=24.6
Q ss_pred cCeeeccCCCcccc-ccCCCCCcccceecCceeeCccCCcc
Q 020988 58 GDLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 58 ~~~l~CP~C~~~l~-~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
...+.||.|+..-. .......+.++-+...+.|.+|||.|
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 56789999998321 11111222233344688999999987
No 352
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=89.56 E-value=0.16 Score=34.96 Aligned_cols=29 Identities=17% Similarity=0.508 Sum_probs=21.8
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
.-.+.|+.|+..+..+.. ...+|+.||+.
T Consensus 26 ~v~Y~C~~CG~~~e~~~~----------d~irCp~CG~R 54 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRT----------DAVRCKDCGHR 54 (70)
T ss_dssp CCCEECSSSCCEECCCTT----------STTCCSSSCCC
T ss_pred eEEEECCCCCCcceeCCC----------CCccCCCCCce
Confidence 456889999998655432 45689999993
No 353
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=88.66 E-value=0.64 Score=44.27 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcc------CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC
Q 020988 154 EFKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227 (319)
Q Consensus 154 ~~~~l~~~l~~~------~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d 227 (319)
+...+..+++.. ...+++|+=||.|.+..-+.+.|. ..|.++|+++.+++.-+.++.. .++..++.+|
T Consensus 69 ~~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~D 142 (482)
T 3me5_A 69 EFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYC-----DPATHHFNED 142 (482)
T ss_dssp HHHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCC-----CTTTCEEESC
T ss_pred HHHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhccc-----CCCcceeccc
Confidence 345565555432 245899999999999999988875 3589999999888777766421 1344567788
Q ss_pred CCCC
Q 020988 228 VCRL 231 (319)
Q Consensus 228 ~~~l 231 (319)
+.++
T Consensus 143 I~~i 146 (482)
T 3me5_A 143 IRDI 146 (482)
T ss_dssp THHH
T ss_pred hhhh
Confidence 8664
No 354
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=88.42 E-value=0.22 Score=35.09 Aligned_cols=26 Identities=35% Similarity=0.990 Sum_probs=17.5
Q ss_pred eeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..||.|++++...+ +...|..|+..|
T Consensus 3 ~~CP~C~~~l~~~~-----------~~~~C~~C~~~~ 28 (81)
T 2jrp_A 3 ITCPVCHHALERNG-----------DTAHCETCAKDF 28 (81)
T ss_dssp CCCSSSCSCCEECS-----------SEEECTTTCCEE
T ss_pred CCCCCCCCccccCC-----------CceECccccccC
Confidence 56888888877653 345566666665
No 355
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=87.99 E-value=1.6 Score=33.50 Aligned_cols=66 Identities=21% Similarity=0.183 Sum_probs=45.0
Q ss_pred CCeEEEEcCCc-Ch-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccE
Q 020988 167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 240 (319)
Q Consensus 167 ~~~VLDiGcG~-G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 240 (319)
..+|+=+|+|. |. ++..+.+.|. +|+++|.+++.++.+++. ++.++.+|..+.. ..-..+|+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~~----------~~~~~~gd~~~~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLEDE----------GFDAVIADPTDESFYRSLDLEGVSA 73 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHT----------TCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHC----------CCcEEECCCCCHHHHHhCCcccCCE
Confidence 45799999864 33 3344455566 999999999887766542 5678888887632 12346898
Q ss_pred EEec
Q 020988 241 VHAG 244 (319)
Q Consensus 241 V~~~ 244 (319)
|+..
T Consensus 74 vi~~ 77 (141)
T 3llv_A 74 VLIT 77 (141)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8774
No 356
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=87.56 E-value=4.6 Score=36.64 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=60.3
Q ss_pred HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-----C-
Q 020988 160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P- 232 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p- 232 (319)
+.....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.- . . .++...-.++ .
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-------a-~-~vi~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVG-------A-T-ATVDPSAGDVVEAIAGP 246 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHT-------C-S-EEECTTSSCHHHHHHST
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-------C-C-EEECCCCcCHHHHHHhh
Confidence 344567899999999975 778888888753348999999999888887641 1 1 1221111110 0
Q ss_pred --CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 233 --FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 233 --~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
...+.+|+|+-. ...+ ..+++..++++++|..
T Consensus 247 ~~~~~gg~Dvvid~-----~G~~-~~~~~~~~~l~~~G~v 280 (370)
T 4ej6_A 247 VGLVPGGVDVVIEC-----AGVA-ETVKQSTRLAKAGGTV 280 (370)
T ss_dssp TSSSTTCEEEEEEC-----SCCH-HHHHHHHHHEEEEEEE
T ss_pred hhccCCCCCEEEEC-----CCCH-HHHHHHHHHhccCCEE
Confidence 223479999763 3222 3467777777766543
No 357
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=87.49 E-value=0.39 Score=36.26 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=27.6
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
..|.-||.|++-|....+.+. ....+.|.+|+..+...+.
T Consensus 2 ~~m~FCp~Cgn~L~~~~~~~~-----~~~~~~C~~C~y~~~~~~~ 41 (113)
T 3h0g_I 2 SNFQYCIECNNMLYPREDKVD-----RVLRLACRNCDYSEIAATS 41 (113)
T ss_dssp -CCCCCSSSCCCCEECCCTTT-----CCCCEECSSSCCEECCSCS
T ss_pred CcceeCcCCCCEeeEcccCCC-----CeeEEECCCCCCeEEcCCC
Confidence 346779999998876643110 1246899999999976654
No 358
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=87.37 E-value=0.26 Score=35.22 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=23.3
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCcccc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
...|.||.|+..-...-.-.. ... .+.+.|..||..|..
T Consensus 21 ~t~F~CPfCnh~~sV~vkidk-~~~--~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCDVKMDR-ARN--TGVISCTVCLEEFQT 59 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEET-TTT--EEEEEESSSCCEEEE
T ss_pred CCeEcCCCCCCCCeEEEEEEc-cCC--EEEEEcccCCCeEEe
Confidence 368999999985211000000 011 267899999999944
No 359
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=86.90 E-value=0.46 Score=36.96 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=27.9
Q ss_pred cccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988 48 SERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 48 ~~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
++.-+......++--||.|++-|...+.... ....+.|++|+..+.....
T Consensus 12 ~~~~~~~~~~~~~~FCPeCgNmL~pked~~~-----~~l~~~CrtCgY~~~~~~~ 61 (133)
T 3qt1_I 12 SGLVPRGSHMTTFRFCRDCNNMLYPREDKEN-----NRLLFECRTCSYVEEAGSP 61 (133)
T ss_dssp ----------CCCCBCTTTCCBCBCCBCTTT-----CCBCCBCSSSCCBCCCSCS
T ss_pred cccccCCccccCCeeCCCCCCEeeECccCCC-----ceeEEECCCCCCcEEcCCc
Confidence 3444445566778889999998866532100 1246899999998865544
No 360
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=86.75 E-value=1.5 Score=39.36 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=55.4
Q ss_pred hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccE
Q 020988 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~ 240 (319)
....++.+||-+|+|. |.++.++++.. ..+|+++|.+++-++.+++.- . . .++ .+...+ . +.+|+
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG-------a-~-~v~-~~~~~~--~-~~~D~ 237 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMG-------V-K-HFY-TDPKQC--K-EELDF 237 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTT-------C-S-EEE-SSGGGC--C-SCEEE
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcC-------C-C-eec-CCHHHH--h-cCCCE
Confidence 3567899999999975 77888887763 349999999999888887621 1 1 122 332222 2 27999
Q ss_pred EEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 241 VHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 241 V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
|+-.-.-. ..++...++++++|.
T Consensus 238 vid~~g~~------~~~~~~~~~l~~~G~ 260 (348)
T 3two_A 238 IISTIPTH------YDLKDYLKLLTYNGD 260 (348)
T ss_dssp EEECCCSC------CCHHHHHTTEEEEEE
T ss_pred EEECCCcH------HHHHHHHHHHhcCCE
Confidence 97643321 124445556555443
No 361
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=86.15 E-value=9.3 Score=32.62 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=49.8
Q ss_pred CeEEEEcCCcChHHHHHHh----hCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 020988 168 GLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243 (319)
Q Consensus 168 ~~VLDiGcG~G~~~~~l~~----~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~ 243 (319)
++||=.|+ |..+..+.+ .+. +|++++.++...+.... .+++++.+|+.++. -..+|+|+.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi~ 69 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLLI 69 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEEE
Confidence 68999995 766655554 455 99999998865443322 37899999998876 467899998
Q ss_pred cccccCCCCH
Q 020988 244 GAALHCWPSP 253 (319)
Q Consensus 244 ~~vl~h~~d~ 253 (319)
........++
T Consensus 70 ~a~~~~~~~~ 79 (286)
T 3ius_A 70 STAPDSGGDP 79 (286)
T ss_dssp CCCCBTTBCH
T ss_pred CCCccccccH
Confidence 7765544443
No 362
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=86.05 E-value=1.7 Score=35.49 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=32.1
Q ss_pred hhccCCCeEEEEcC--CcChHHHHHHh-hCCCCeEEEEeCCHHHHHHHHH
Q 020988 162 FKSAQGGLLVDVSC--GSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYD 208 (319)
Q Consensus 162 l~~~~~~~VLDiGc--G~G~~~~~l~~-~g~~~~v~gvD~s~~~l~~a~~ 208 (319)
....++.+||.+|+ |.|.....+++ .|. +|+++|.+++.++.+++
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~ 81 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSR 81 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHT
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH
Confidence 34567899999995 44665555554 455 89999999987766643
No 363
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=86.03 E-value=5.5 Score=36.56 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=60.2
Q ss_pred hccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------CCC
Q 020988 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS 235 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~ 235 (319)
...++.+||=+|+|. |.++.++++.....+|+++|.+++-++.+++.-. . .++..+-.++. ...
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa--------~-~vi~~~~~~~~~~i~~~t~g 280 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA--------D-HVIDPTKENFVEAVLDYTNG 280 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC--------S-EEECTTTSCHHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC--------C-EEEcCCCCCHHHHHHHHhCC
Confidence 356789999999875 7788888877543489999999998888876411 1 12221111110 123
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhh----cCCCeeEE
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSY----SLLSICYL 272 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvl----k~g~~~g~ 272 (319)
..+|+|+- ....+...+..+.+++ +++|....
T Consensus 281 ~g~D~vid-----~~g~~~~~~~~~~~~l~~~~~~~G~iv~ 316 (404)
T 3ip1_A 281 LGAKLFLE-----ATGVPQLVWPQIEEVIWRARGINATVAI 316 (404)
T ss_dssp CCCSEEEE-----CSSCHHHHHHHHHHHHHHCSCCCCEEEE
T ss_pred CCCCEEEE-----CCCCcHHHHHHHHHHHHhccCCCcEEEE
Confidence 46999964 3445544556666666 77765443
No 364
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=86.02 E-value=2.9 Score=37.56 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=60.6
Q ss_pred HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------
Q 020988 160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------ 232 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------ 232 (319)
+.....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.- . . .++..+-.++.
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lG-------a-~-~vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYG-------A-T-DIINYKNGDIVEQILKA 230 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHT-------C-C-EEECGGGSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC-------C-c-eEEcCCCcCHHHHHHHH
Confidence 445567899999999886 778888887743347999999999888887641 1 1 12221111110
Q ss_pred CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 233 FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
.....+|+|+-.- ..+ ..+++..++++++|...
T Consensus 231 t~g~g~D~v~d~~-----g~~-~~~~~~~~~l~~~G~~v 263 (352)
T 3fpc_A 231 TDGKGVDKVVIAG-----GDV-HTFAQAVKMIKPGSDIG 263 (352)
T ss_dssp TTTCCEEEEEECS-----SCT-THHHHHHHHEEEEEEEE
T ss_pred cCCCCCCEEEECC-----CCh-HHHHHHHHHHhcCCEEE
Confidence 1234699997532 222 34666777777765443
No 365
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=86.01 E-value=1.4 Score=39.20 Aligned_cols=132 Identities=9% Similarity=-0.015 Sum_probs=66.7
Q ss_pred cCCCeEEEEcCCcChHHHHH----HhhCCCCe--EEEEeCCH--------H-HHHHHHHHHhhcCccCCC--CeEEEEcC
Q 020988 165 AQGGLLVDVSCGSGLFSRKF----AKSGTYSG--VVALDFSE--------N-MLRQCYDFIKQDNTILTS--NLALVRAD 227 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l----~~~g~~~~--v~gvD~s~--------~-~l~~a~~~~~~~~~~~~~--~i~~~~~d 227 (319)
.+.-+|||+|=|+|.+.... .+..+..+ ++.+|..+ . ..+............... .+++..+|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 44568999999999865433 23355444 56666421 1 111122111111000112 34567788
Q ss_pred CCC-CC-CCCCCccEEEecccccCCCCH----HHHHHHHHHhhcCCCeeEEEEeeccchhcccCCcccccccccccc
Q 020988 228 VCR-LP-FASGFVDAVHAGAALHCWPSP----SNAASVFSSSYSLLSICYLLQFRYTKIIELDNDNLILHPRRGQVN 298 (319)
Q Consensus 228 ~~~-lp-~~~~~fD~V~~~~vl~h~~d~----~~~l~el~rvlk~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (319)
+.+ ++ +.+..||+|+.-. +---.+| ...++.+.++++++|.+..+- ....+...+..-.|.......++
T Consensus 175 a~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt-aag~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSYS-SSLSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-CCHHHHHHHHHTTCEEEEEECC-
T ss_pred HHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-CcHHHHHHHHHCCCEEEecCCCC
Confidence 755 33 3445799999843 3333344 467888888887766443211 22233333444444444443333
No 366
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=85.90 E-value=0.53 Score=36.03 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=26.3
Q ss_pred cccccCeeeccCCCccc--cccCCCCCcccceecCceeeCccCCcccc
Q 020988 54 LELEGDLFSCPICYEPL--IRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 54 ~~~~~~~l~CP~C~~~l--~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
++++.....||.|+..- ... ....+.++-+...+.|.+|||.|..
T Consensus 66 ~t~p~t~~~Cp~C~~~~a~~~q-~q~rsade~~t~fy~C~~C~~~w~~ 112 (122)
T 1twf_I 66 PTLPRSDRECPKCHSRENVFFQ-SQQRRKDTSMVLFFVCLSCSHIFTS 112 (122)
T ss_dssp TTSCCCCCCCTTTCCCCEEEEE-CSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred ccccccCCCCCCCCCCEEEEEE-ecCccCCCCceEEEEeCCCCCEecc
Confidence 45555568899999831 111 1111222223356899999999843
No 367
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=85.77 E-value=1.8 Score=33.38 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=45.7
Q ss_pred CCeEEEEcCCc-Ch-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccE
Q 020988 167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 240 (319)
Q Consensus 167 ~~~VLDiGcG~-G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 240 (319)
..+|+=+|+|. |. ++..+.+.+. .|+++|.+++.++.+++ .++.++.+|..+.. ..-..+|+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~ 74 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW 74 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence 35789999875 44 3344445565 99999999998877765 26678889986632 11246888
Q ss_pred EEec
Q 020988 241 VHAG 244 (319)
Q Consensus 241 V~~~ 244 (319)
|++.
T Consensus 75 vi~~ 78 (140)
T 3fwz_A 75 LILT 78 (140)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8764
No 368
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=85.28 E-value=0.34 Score=43.39 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=24.7
Q ss_pred cccCeeeccCCCccc-cccCCCCCcccceecCceeeCccCCcc
Q 020988 56 LEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 56 ~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.....+.||.|+..- ........+.+.-+...+.|.+|||.|
T Consensus 264 ~~~~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 264 SVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred cCcccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 345688999999831 111111122223333578999999987
No 369
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=85.10 E-value=0.24 Score=34.66 Aligned_cols=35 Identities=23% Similarity=0.693 Sum_probs=20.2
Q ss_pred eeccCCCcc-cccc--------CCCCCcccceecCceeeCccCCcc
Q 020988 61 FSCPICYEP-LIRK--------GPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 61 l~CP~C~~~-l~~~--------~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..||+|++. |... +...+....+ ..+.|+.||..|
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~V--p~~~C~~CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGI--HGLYCVHCEESI 46 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEE--EEEEETTTCCEE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCc--eeEECCCCCCEE
Confidence 579999963 4221 1111111222 467899999987
No 370
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=84.73 E-value=2.8 Score=33.62 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=44.2
Q ss_pred CCCeEEEEcCCc-Ch-HHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----C-CCCC
Q 020988 166 QGGLLVDVSCGS-GL-FSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F-ASGF 237 (319)
Q Consensus 166 ~~~~VLDiGcG~-G~-~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~-~~~~ 237 (319)
.+.+|+=+|+|. |. ++..+.+. +. .|+++|.+++.++.+++. ++.++.+|..+.. . .-..
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~~----------g~~~~~gd~~~~~~l~~~~~~~~ 105 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRSE----------GRNVISGDATDPDFWERILDTGH 105 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHHT----------TCCEEECCTTCHHHHHTBCSCCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHHC----------CCCEEEcCCCCHHHHHhccCCCC
Confidence 356899999874 43 34455555 66 899999999877665531 4556777775421 1 1346
Q ss_pred ccEEEec
Q 020988 238 VDAVHAG 244 (319)
Q Consensus 238 fD~V~~~ 244 (319)
+|+|+..
T Consensus 106 ad~vi~~ 112 (183)
T 3c85_A 106 VKLVLLA 112 (183)
T ss_dssp CCEEEEC
T ss_pred CCEEEEe
Confidence 8988874
No 371
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=84.62 E-value=0.94 Score=32.11 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=24.6
Q ss_pred ccccCeeeccCCCccccc------cCCCCCcccceecCceeeCccCCcccc
Q 020988 55 ELEGDLFSCPICYEPLIR------KGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 55 ~~~~~~l~CP~C~~~l~~------~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
......+.|++|+..+.. .... ... ...+.|+.|+..|..
T Consensus 23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~-H~~----~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 23 SASAECHLCPVCGESFASKGAQERHLRL-LHA----AQVFPCKYCPATFYS 68 (85)
T ss_dssp CCCCTTEECTTSCCEESSHHHHHHHHHT-TSC----SSSEECTTSSCEESS
T ss_pred CCCCCCEECCCCCCCcCcHHHHhhhhhh-ccC----CCccCCCCCCCEeCC
Confidence 334566899999984422 1100 000 146899999999954
No 372
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=84.51 E-value=9.9 Score=34.08 Aligned_cols=101 Identities=11% Similarity=0.048 Sum_probs=64.1
Q ss_pred HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCC--CCC----
Q 020988 160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLP---- 232 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp---- 232 (319)
+.....++.+||-+|+|. |.++.++++......|+++|.+++-++.+++. .. .-+.+...+.. ++.
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~------~~~~~~~~~~~~~~~~~~v~ 245 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP------EVVTHKVERLSAEESAKKIV 245 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT------TCEEEECCSCCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch------hcccccccccchHHHHHHHH
Confidence 344567899999999975 78888888774323499999999999998875 21 12222211110 000
Q ss_pred --CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 233 --FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 233 --~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
.....+|+|+-. ...+ ..++...++++++|..-.+
T Consensus 246 ~~t~g~g~Dvvid~-----~g~~-~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 246 ESFGGIEPAVALEC-----TGVE-SSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HHTSSCCCSEEEEC-----SCCH-HHHHHHHHHSCTTCEEEEC
T ss_pred HHhCCCCCCEEEEC-----CCCh-HHHHHHHHHhcCCCEEEEE
Confidence 123579999763 3232 3467788888888765443
No 373
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.90 E-value=0.52 Score=30.12 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=20.2
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+...||.|+..+. -+.+.|..||+..
T Consensus 13 ~k~iCpkC~a~~~-------------~gaw~CrKCG~~~ 38 (51)
T 3j21_g 13 KKYVCLRCGATNP-------------WGAKKCRKCGYKR 38 (51)
T ss_dssp SEEECTTTCCEEC-------------TTCSSCSSSSSCC
T ss_pred CCccCCCCCCcCC-------------CCceecCCCCCcc
Confidence 5678999999732 1678999999874
No 374
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=83.30 E-value=4.1 Score=36.65 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=55.0
Q ss_pred hhccCC------CeEEEEcCCc-ChHH-HHHH-hhCCCCe-EEEEeCCHH---HHHHHHHHHhhcCccCCCCeEEEEcCC
Q 020988 162 FKSAQG------GLLVDVSCGS-GLFS-RKFA-KSGTYSG-VVALDFSEN---MLRQCYDFIKQDNTILTSNLALVRADV 228 (319)
Q Consensus 162 l~~~~~------~~VLDiGcG~-G~~~-~~l~-~~g~~~~-v~gvD~s~~---~l~~a~~~~~~~~~~~~~~i~~~~~d~ 228 (319)
....++ .+||-+|+|. |.++ .+++ +.. ..+ |+++|.+++ -++.+++. +.+.+ |.
T Consensus 162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~l----------Ga~~v--~~ 228 (357)
T 2b5w_A 162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEEL----------DATYV--DS 228 (357)
T ss_dssp HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHT----------TCEEE--ET
T ss_pred cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHc----------CCccc--CC
Confidence 344567 8999999864 7777 7777 653 235 999999987 77777642 23333 33
Q ss_pred CCCCCC-----CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 229 CRLPFA-----SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 229 ~~lp~~-----~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
.+..+. .+.+|+|+-. ...+ ..+++..++++++|.
T Consensus 229 ~~~~~~~i~~~~gg~Dvvid~-----~g~~-~~~~~~~~~l~~~G~ 268 (357)
T 2b5w_A 229 RQTPVEDVPDVYEQMDFIYEA-----TGFP-KHAIQSVQALAPNGV 268 (357)
T ss_dssp TTSCGGGHHHHSCCEEEEEEC-----SCCH-HHHHHHHHHEEEEEE
T ss_pred CccCHHHHHHhCCCCCEEEEC-----CCCh-HHHHHHHHHHhcCCE
Confidence 221111 1368998653 3332 346677777776543
No 375
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=83.03 E-value=0.84 Score=31.19 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=12.7
Q ss_pred cccccCeeeccCCCcccc
Q 020988 54 LELEGDLFSCPICYEPLI 71 (319)
Q Consensus 54 ~~~~~~~l~CP~C~~~l~ 71 (319)
.....+.+.||+|...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~ 26 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMT 26 (74)
T ss_dssp CCCSCGGGSCSSSCCCCT
T ss_pred cccCCCCCCCcCCChHHh
Confidence 334456789999988654
No 376
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=82.94 E-value=1.6 Score=34.86 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-CC----CCCCccE
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF----ASGFVDA 240 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~----~~~~fD~ 240 (319)
..+.|||+|=|+|+.-..+.+..|..+++.+|-.-..- .....+.-.++.+|+.+. |. -....-+
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~h----------p~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~L 109 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASH----------PDSTPPEAQLILGDIRETLPATLERFGATASL 109 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCC----------GGGCCCGGGEEESCHHHHHHHHHHHHCSCEEE
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccC----------CCCCCchHheecccHHHHHHHHHHhcCCceEE
Confidence 46789999999999999999999999999999632110 001233445788887652 32 1334444
Q ss_pred EEecccccCCCCHHHH-HHHHHH-hhcCCCeeEEEEee
Q 020988 241 VHAGAALHCWPSPSNA-ASVFSS-SYSLLSICYLLQFR 276 (319)
Q Consensus 241 V~~~~vl~h~~d~~~~-l~el~r-vlk~g~~~g~~~~~ 276 (319)
+++-...++ ++.+.+ .+.+.. +...+.++|+++-.
T Consensus 110 aHaD~G~g~-~~~d~a~a~~lsplI~~~la~GGi~vS~ 146 (174)
T 3iht_A 110 VHADLGGHN-REKNDRFARLISPLIEPHLAQGGLMVSS 146 (174)
T ss_dssp EEECCCCSC-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred EEeecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 544333332 222222 222322 33345666766653
No 377
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=82.51 E-value=4.3 Score=36.71 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=58.9
Q ss_pred CCCeEEEEc-CC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC-C-----CCCCCC
Q 020988 166 QGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PFASGF 237 (319)
Q Consensus 166 ~~~~VLDiG-cG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-----p~~~~~ 237 (319)
++.+||=+| +| .|.++.++++.....+|+++|.+++-++.+++. +.+.+. |..+ + ....+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----------Gad~vi-~~~~~~~~~v~~~~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----------GAHHVI-DHSKPLAAEVAALGLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----------TCSEEE-CTTSCHHHHHHTTCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----------CCCEEE-eCCCCHHHHHHHhcCCC
Confidence 678999998 55 488888888862235999999999888888652 111111 1111 1 122357
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 238 VDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 238 fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
+|+|+-. . .....+++..++++++|....+
T Consensus 240 ~Dvvid~-----~-g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFST-----T-HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEEC-----S-CHHHHHHHHHHHSCTTCEEEEC
T ss_pred ceEEEEC-----C-CchhhHHHHHHHhcCCCEEEEE
Confidence 9988753 2 2234577888888888765543
No 378
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=82.49 E-value=0.94 Score=37.94 Aligned_cols=39 Identities=21% Similarity=0.528 Sum_probs=25.7
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
=.++||.|+......+........+....+.|++|+..+
T Consensus 21 l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 21 LELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp EEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred eEEECCCCCCccCCCCcccCCCcccccccccCCCCCCcC
Confidence 368899999865554432222222555788999999875
No 379
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=81.89 E-value=0.81 Score=31.95 Aligned_cols=16 Identities=44% Similarity=0.951 Sum_probs=12.1
Q ss_pred cCeeeccCCCcccccc
Q 020988 58 GDLFSCPICYEPLIRK 73 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~ 73 (319)
.+.+.||+|-.++...
T Consensus 9 ~~~~~CpICle~~~~~ 24 (78)
T 1e4u_A 9 EDPVECPLCMEPLEID 24 (78)
T ss_dssp CCCCBCTTTCCBCCTT
T ss_pred ccCCcCCccCccCccc
Confidence 4567899999977543
No 380
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=81.86 E-value=0.28 Score=38.22 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred ccccccCeeeccCCCcccc-ccCCCCCcccceecCceeeCccCCccc
Q 020988 53 TLELEGDLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 53 ~~~~~~~~l~CP~C~~~l~-~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
+++++..-..||.|+..-. .......+.++-+...+.|.+||+.|.
T Consensus 85 dptlp~t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 85 DPTLPRSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp -----------------------------------------------
T ss_pred cccCCcccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence 4566666789999997311 111111122223345789999999873
No 381
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=81.41 E-value=4.2 Score=36.10 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=33.4
Q ss_pred hhccCCCeEEEEcC--CcChHHHHHHhh-CCCCeEEEEeCCHHHHHHHH
Q 020988 162 FKSAQGGLLVDVSC--GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCY 207 (319)
Q Consensus 162 l~~~~~~~VLDiGc--G~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~ 207 (319)
....++.+||-.|+ |.|..+..+++. |. +|+++|.+++.++.++
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~ 187 (333)
T 1v3u_A 141 CGVKGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKIAYLK 187 (333)
T ss_dssp SCCCSSCEEEEESTTBHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHH
T ss_pred hCCCCCCEEEEecCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH
Confidence 34567899999998 456666666654 44 9999999998887773
No 382
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=80.27 E-value=9.4 Score=31.63 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=49.0
Q ss_pred cCCCeEEEEcCCc--C-hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCe-EEEEcCCC-CCCCCCCCcc
Q 020988 165 AQGGLLVDVSCGS--G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVC-RLPFASGFVD 239 (319)
Q Consensus 165 ~~~~~VLDiGcG~--G-~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i-~~~~~d~~-~lp~~~~~fD 239 (319)
..+++||=.|+.. | .++..+++.|. +|++++.++..++.... .++ .++.+|+. .+.-.-+..|
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~D 86 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGPELRE----------RGASDIVVANLEEDFSHAFASID 86 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH----------TTCSEEEECCTTSCCGGGGTTCS
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHHHHHh----------CCCceEEEcccHHHHHHHHcCCC
Confidence 3578899888643 2 24455556666 99999998876544332 267 88999986 2211124689
Q ss_pred EEEecccccCCCCHH
Q 020988 240 AVHAGAALHCWPSPS 254 (319)
Q Consensus 240 ~V~~~~vl~h~~d~~ 254 (319)
+|+.........++.
T Consensus 87 ~vi~~ag~~~~~~~~ 101 (236)
T 3e8x_A 87 AVVFAAGSGPHTGAD 101 (236)
T ss_dssp EEEECCCCCTTSCHH
T ss_pred EEEECCCCCCCCCcc
Confidence 999877655444444
No 383
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=80.18 E-value=7.9 Score=33.17 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=55.1
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCC------------HHHHHHHHHHHhhcCccCCCCeEEEEcCCC
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVC 229 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~ 229 (319)
..++++|=.|++.| .++..+++.|. +|+.+|.+ .+.++...+.+... ..++.++.+|+.
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~ 84 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI----GSRIVARQADVR 84 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH----TCCEEEEECCTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc----CCeEEEEeCCCC
Confidence 35678999998765 35666777777 89999987 66666655555443 357899999997
Q ss_pred CCC-----CC-----CCCccEEEecccccCC
Q 020988 230 RLP-----FA-----SGFVDAVHAGAALHCW 250 (319)
Q Consensus 230 ~lp-----~~-----~~~fD~V~~~~vl~h~ 250 (319)
+.. +. -+..|+++.+..+...
T Consensus 85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~ 115 (278)
T 3sx2_A 85 DRESLSAALQAGLDELGRLDIVVANAGIAPM 115 (278)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 743 10 1378999988765543
No 384
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=79.66 E-value=14 Score=30.49 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC----
Q 020988 167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---- 234 (319)
Q Consensus 167 ~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---- 234 (319)
++++|=.|++.| .++..+++.|. +|+.++.+.+.++...+.+... ...++.++.+|+.+.. +.
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQE---QGVEVFYHHLDVSKAESVEEFSKKVLE 76 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH---HCCCEEEEECCTTCHHHHHHHCC-HHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhh---cCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 457888887655 25566666676 8999999998877766655422 1357889999997742 11
Q ss_pred -CCCccEEEecccccCC
Q 020988 235 -SGFVDAVHAGAALHCW 250 (319)
Q Consensus 235 -~~~fD~V~~~~vl~h~ 250 (319)
-+..|+++.+..+.+.
T Consensus 77 ~~g~id~li~~Ag~~~~ 93 (235)
T 3l77_A 77 RFGDVDVVVANAGLGYF 93 (235)
T ss_dssp HHSSCSEEEECCCCCCC
T ss_pred hcCCCCEEEECCccccc
Confidence 1378999987765443
No 385
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=79.62 E-value=2.2 Score=30.29 Aligned_cols=30 Identities=20% Similarity=0.540 Sum_probs=20.7
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.+.-||-|+..+..... ...+.|+.|++.|
T Consensus 24 ~~~wCP~C~~~~~~~~~---------~~~v~C~~C~~~F 53 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYERE---------QLEATCPQCHQTF 53 (86)
T ss_dssp CEECCSSSCCCEECCCS---------CSCEECTTTCCEE
T ss_pred CEeECcCCCchheecCC---------CCceEeCCCCCcc
Confidence 44459999987754321 1347899999988
No 386
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=79.57 E-value=1 Score=34.36 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=26.2
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCC
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD 101 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~ 101 (319)
.++.-||.|++-|...... .. ....+.|+.|+..+....
T Consensus 2 ~~~~FCp~CgnlL~~~~~~--~~---~~~~~~C~~C~y~~~~~~ 40 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDK--EN---NRLLFECRTCSYVEEAGS 40 (122)
T ss_dssp CCCCBCSSSCCBCEEEEET--TT---TEEEEECSSSSCEEECSC
T ss_pred CCCCcccccCccCcccccC--cC---CCCEEECCcCCCeeecCc
Confidence 3577899999977644210 00 125789999999986553
No 387
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=79.48 E-value=3.2 Score=36.62 Aligned_cols=70 Identities=7% Similarity=-0.043 Sum_probs=47.6
Q ss_pred HHhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCc
Q 020988 160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f 238 (319)
+.....++.+||-+|+|. |.++.++++.. ..+|+++| +++-++.+++. +.+.+..|..++ .+.+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~l----------Ga~~v~~d~~~v---~~g~ 200 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKR----------GVRHLYREPSQV---TQKY 200 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHH----------TEEEEESSGGGC---CSCE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHc----------CCCEEEcCHHHh---CCCc
Confidence 334557899999999974 77888887763 23999999 88888888763 223222232222 4679
Q ss_pred cEEEec
Q 020988 239 DAVHAG 244 (319)
Q Consensus 239 D~V~~~ 244 (319)
|+|+-.
T Consensus 201 Dvv~d~ 206 (315)
T 3goh_A 201 FAIFDA 206 (315)
T ss_dssp EEEECC
T ss_pred cEEEEC
Confidence 999753
No 388
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=79.00 E-value=7.8 Score=28.94 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=41.7
Q ss_pred CCeEEEEcCCc-Ch-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccE
Q 020988 167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 240 (319)
Q Consensus 167 ~~~VLDiGcG~-G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 240 (319)
+++|+=+|+|. |. ++..+.+.+. +|+++|.+++.++..++.. ++.++.+|..+.. ..-..+|+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~~---------~~~~~~~d~~~~~~l~~~~~~~~d~ 72 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAEI---------DALVINGDCTKIKTLEDAGIEDADM 72 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC---------SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhc---------CcEEEEcCCCCHHHHHHcCcccCCE
Confidence 46888898864 33 3344445555 8999999988766554421 4556777765421 11246899
Q ss_pred EEec
Q 020988 241 VHAG 244 (319)
Q Consensus 241 V~~~ 244 (319)
|+..
T Consensus 73 vi~~ 76 (140)
T 1lss_A 73 YIAV 76 (140)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8875
No 389
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=78.97 E-value=4.7 Score=36.25 Aligned_cols=97 Identities=11% Similarity=-0.011 Sum_probs=61.3
Q ss_pred HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC---CCC----C-
Q 020988 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCR----L- 231 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d---~~~----l- 231 (319)
.....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.- . . .++..+ ..+ +
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-------a-~-~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG-------A-D-LVLQISKESPQEIARKVE 236 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-------C-S-EEEECSSCCHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-------C-C-EEEcCcccccchHHHHHH
Confidence 34567899999999985 888888887643338999999999888887531 1 1 222211 000 0
Q ss_pred CCCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEE
Q 020988 232 PFASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 232 p~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~ 272 (319)
....+.+|+|+-. ...+ ..++...++++++|....
T Consensus 237 ~~~~~g~D~vid~-----~g~~-~~~~~~~~~l~~~G~iv~ 271 (356)
T 1pl8_A 237 GQLGCKPEVTIEC-----TGAE-ASIQAGIYATRSGGTLVL 271 (356)
T ss_dssp HHHTSCCSEEEEC-----SCCH-HHHHHHHHHSCTTCEEEE
T ss_pred HHhCCCCCEEEEC-----CCCh-HHHHHHHHHhcCCCEEEE
Confidence 0011469999753 3232 346777888888876543
No 390
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=78.03 E-value=10 Score=32.11 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=53.7
Q ss_pred cCCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC--------
Q 020988 165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-------- 233 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-------- 233 (319)
..++++|=.|++.|. .+..+++.|. +|+.+|.+++.++...+.+. .++.++.+|+.+..-
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-------PRVHALRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-------CcceEEEccCCCHHHHHHHHHHH
Confidence 356789999987652 5566677776 99999999988777666542 368889999977431
Q ss_pred --CCCCccEEEeccccc
Q 020988 234 --ASGFVDAVHAGAALH 248 (319)
Q Consensus 234 --~~~~fD~V~~~~vl~ 248 (319)
.-+..|+++.+..+.
T Consensus 77 ~~~~g~id~lv~nAg~~ 93 (255)
T 4eso_A 77 GQTLGAIDLLHINAGVS 93 (255)
T ss_dssp HHHHSSEEEEEECCCCC
T ss_pred HHHhCCCCEEEECCCCC
Confidence 014789998876544
No 391
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=77.92 E-value=0.83 Score=26.87 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=19.3
Q ss_pred eccCCCcc---ccccCCCCCcccceecCceeeCccCCcccc
Q 020988 62 SCPICYEP---LIRKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 62 ~CP~C~~~---l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
.||.|++| |..... .-.++|..||...+.
T Consensus 2 lC~~C~~peT~l~~~~~---------~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGR---------VHLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEEETT---------EEEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEEeCC---------cEEEEhhcCCCcccc
Confidence 59999995 333221 136789999987643
No 392
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.59 E-value=1.6 Score=29.53 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=12.7
Q ss_pred cccccCeeeccCCCcccc
Q 020988 54 LELEGDLFSCPICYEPLI 71 (319)
Q Consensus 54 ~~~~~~~l~CP~C~~~l~ 71 (319)
.....+.+.||+|...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~ 26 (72)
T 2djb_A 9 LSELTPYILCSICKGYLI 26 (72)
T ss_dssp CCCCCGGGSCTTTSSCCS
T ss_pred HhhcCCCCCCCCCChHHH
Confidence 344456789999988653
No 393
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=77.49 E-value=23 Score=31.30 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=60.3
Q ss_pred HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------C
Q 020988 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F 233 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~ 233 (319)
.....++.+||=+|+|. |.++.++++......++++|.+++-++.+++.- --.++...-.+.+ -
T Consensus 155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lG---------a~~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 155 LAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFG---------AMQTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp HTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT---------CSEEEETTTSCHHHHHHHHG
T ss_pred HhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcC---------CeEEEeCCCCCHHHHHHhhc
Confidence 34567889999999975 566677777644456799999999888887631 1122222111111 1
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeEEE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICYLL 273 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g~~ 273 (319)
....+|+|+-. ... ...++...+++++++....+
T Consensus 226 ~~~g~d~v~d~-----~G~-~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 226 ELRFNQLILET-----AGV-PQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp GGCSSEEEEEC-----SCS-HHHHHHHHHHCCTTCEEEEC
T ss_pred ccCCccccccc-----ccc-cchhhhhhheecCCeEEEEE
Confidence 12457877653 323 34467778888888765544
No 394
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=77.43 E-value=3.6 Score=40.56 Aligned_cols=106 Identities=12% Similarity=-0.021 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCcChHHHHHHhhC------------CCCeEEEEeC---CHHHHHHHHHH-----------HhhcCcc---
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSG------------TYSGVVALDF---SENMLRQCYDF-----------IKQDNTI--- 216 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g------------~~~~v~gvD~---s~~~l~~a~~~-----------~~~~~~~--- 216 (319)
+.-+|||+|-|+|.+.....+.. ...+++++|. +.+.++.+-+. .......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 44689999999998766654431 1245899999 77777644331 1111000
Q ss_pred --------CCCCeEEEEcCCCC-CC-C--C-CCCccEEEecccccCCCCH----HHHHHHHHHhhcCCCeeEE
Q 020988 217 --------LTSNLALVRADVCR-LP-F--A-SGFVDAVHAGAALHCWPSP----SNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 217 --------~~~~i~~~~~d~~~-lp-~--~-~~~fD~V~~~~vl~h~~d~----~~~l~el~rvlk~g~~~g~ 272 (319)
....+++..+|+.+ ++ + . +..||+|+.-. +-.-.+| ..+++.+.+++++++....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 01234456677644 22 1 1 46799998843 2111122 4678889999888765543
No 395
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=77.20 E-value=11 Score=31.95 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=56.7
Q ss_pred CCCeEEEEcC-CcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC--
Q 020988 166 QGGLLVDVSC-GSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 234 (319)
Q Consensus 166 ~~~~VLDiGc-G~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 234 (319)
.++++|=.|+ |.|. ++..+++.|. +|+.+|.+...++...+.+... ...++.++.+|+.+.. +.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADL---GLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT---CSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhc---CCCceEEEEeCCCCHHHHHHHHHHH
Confidence 4678999988 5553 5667777777 8999999998888877776543 2357899999998743 00
Q ss_pred ---CCCccEEEeccccc
Q 020988 235 ---SGFVDAVHAGAALH 248 (319)
Q Consensus 235 ---~~~fD~V~~~~vl~ 248 (319)
-+..|+++.+..+.
T Consensus 96 ~~~~g~id~li~~Ag~~ 112 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLG 112 (266)
T ss_dssp HHHHSCCCEEEECCCCC
T ss_pred HHHhCCCcEEEECCCcC
Confidence 13689999877654
No 396
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=77.09 E-value=3.1 Score=43.19 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCC---------------
Q 020988 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--------------- 230 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~--------------- 230 (319)
...+++|+=||.|.++.-+.+.|....+.++|+++.+++.-+.+. ++..++.+|+..
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~--------p~~~~~~~DI~~l~~~~~~~di~~~~~ 610 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN--------PGSTVFTEDCNILLKLVMAGETTNSRG 610 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC--------TTSEEECSCHHHHHHHHHHTCSBCTTC
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC--------CCCccccccHHHHhhhccchhhhhhhh
Confidence 445899999999999999988874346889999999887777664 344555555321
Q ss_pred --CCCCCCCccEEEecc
Q 020988 231 --LPFASGFVDAVHAGA 245 (319)
Q Consensus 231 --lp~~~~~fD~V~~~~ 245 (319)
+| ..+.+|+|+.+.
T Consensus 611 ~~lp-~~~~vDll~GGp 626 (1002)
T 3swr_A 611 QRLP-QKGDVEMLCGGP 626 (1002)
T ss_dssp CBCC-CTTTCSEEEECC
T ss_pred hhcc-cCCCeeEEEEcC
Confidence 22 135789998754
No 397
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=76.81 E-value=4.8 Score=35.72 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=36.2
Q ss_pred HHhhccCCCeEEEEcC--CcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 020988 160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (319)
Q Consensus 160 ~~l~~~~~~~VLDiGc--G~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~ 208 (319)
+.....++.+||-+|+ |.|..+.++++.. ..+|+++|.+++.++.+.+
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~ 192 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVE 192 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 4455678999999998 4577777777653 2399999999988877743
No 398
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=76.81 E-value=1.2 Score=29.14 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=21.2
Q ss_pred eeeccCCCccccc------cCCCCCcccceecCceeeCccCCcccc
Q 020988 60 LFSCPICYEPLIR------KGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 60 ~l~CP~C~~~l~~------~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
-+.|+.|+..+.. +.. +. .....+.|+.||..|..
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~--~H---t~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRR--AH---LGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHH--HH---HTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHHHHHHHHH--Hh---CCCcCeECCCCCCCcCC
Confidence 3789999974422 100 00 00146899999999843
No 399
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=76.71 E-value=5.8 Score=35.32 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=34.9
Q ss_pred hhccCCCeEEEEcC--CcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 020988 162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (319)
Q Consensus 162 l~~~~~~~VLDiGc--G~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~ 208 (319)
....++.+||-+|+ |.|..+.++++.. ..+|+++|.+++.++.+++
T Consensus 151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~ 198 (345)
T 2j3h_A 151 CSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKT 198 (345)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 34567899999997 4677777776653 2389999999988877764
No 400
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=76.23 E-value=0.38 Score=31.51 Aligned_cols=40 Identities=20% Similarity=0.472 Sum_probs=23.2
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
..+.|+.|+..+..... +..-......+.|+.||..|...
T Consensus 13 k~~~C~~C~k~F~~~~~--l~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEA--NQLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SEEECSSSCCEEEHHHH--HHHEETTTTEEBCSSSCCBCEEC
T ss_pred CCccCCCCCchhccHHH--hHhhcCCCCCEECCCCCCccccC
Confidence 46899999985422110 00000012468999999999543
No 401
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.11 E-value=1.8 Score=29.92 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=25.7
Q ss_pred ccccccccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 49 ERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 49 ~~~~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
++....+....+-.|.+|.+.+.. ..+|..|+|.|
T Consensus 4 ~~~~~~~y~~~i~~C~IC~~~i~~--------------g~~C~~C~h~f 38 (74)
T 2ct0_A 4 GSSGRETYPDAVKICNICHSLLIQ--------------GQSCETCGIRM 38 (74)
T ss_dssp CCCCCCCCSSSSCBCSSSCCBCSS--------------SEECSSSCCEE
T ss_pred CccchhhccCCCCcCcchhhHccc--------------CCccCCCCchh
Confidence 445556667778889999997652 24788899888
No 402
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=75.93 E-value=12 Score=32.17 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=58.0
Q ss_pred cCCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC--------
Q 020988 165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-------- 233 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-------- 233 (319)
.+++.+|=-|.+.|. .+..+++.|. +|+.+|.+++.++...+.++.. ..++.++.+|+.+..-
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~----g~~~~~~~~Dvt~~~~v~~~~~~~ 78 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGM----GKEVLGVKADVSKKKDVEEFVRRT 78 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 457888888988773 5566677776 9999999999998888887664 4678889999976430
Q ss_pred --CCCCccEEEecccc
Q 020988 234 --ASGFVDAVHAGAAL 247 (319)
Q Consensus 234 --~~~~fD~V~~~~vl 247 (319)
.-+..|+++.+..+
T Consensus 79 ~~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 79 FETYSRIDVLCNNAGI 94 (254)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCcc
Confidence 12578999987643
No 403
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=75.72 E-value=15 Score=31.11 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----C----
Q 020988 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 233 (319)
Q Consensus 166 ~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 233 (319)
.++++|=.|++.|. ++..+++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+.. +
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDT----GRRALSVGTDITDDAQVAHLVDETM 83 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 56789999988763 5667777777 9999999998888877776553 457889999998743 0
Q ss_pred -CCCCccEEEecccc
Q 020988 234 -ASGFVDAVHAGAAL 247 (319)
Q Consensus 234 -~~~~fD~V~~~~vl 247 (319)
.-+..|+++.+...
T Consensus 84 ~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 84 KAYGRVDVVINNAFR 98 (264)
T ss_dssp HHTSCCSEEEECCCS
T ss_pred HHcCCCcEEEECCCC
Confidence 11478999987643
No 404
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=75.41 E-value=11 Score=31.69 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVAD----GGTAISVAVDVSDPESAKAMADRTL 81 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4678999998765 35666677776 8999999998888877776553 457888999997743 00
Q ss_pred --CCCccEEEecccc
Q 020988 235 --SGFVDAVHAGAAL 247 (319)
Q Consensus 235 --~~~fD~V~~~~vl 247 (319)
-+..|+++.+..+
T Consensus 82 ~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 82 AEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCc
Confidence 1378999987654
No 405
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=75.25 E-value=4.2 Score=40.28 Aligned_cols=108 Identities=15% Similarity=0.021 Sum_probs=62.6
Q ss_pred cCCCeEEEEcCCcChHHHHHHhhC-------C-----CCeEEEEeC---CHHHHHHHHH-----------HHhhcCc---
Q 020988 165 AQGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDF---SENMLRQCYD-----------FIKQDNT--- 215 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~~~~~l~~~g-------~-----~~~v~gvD~---s~~~l~~a~~-----------~~~~~~~--- 215 (319)
.+.-+|+|+|-|+|.+...+.+.. | ..+++.+|. +.+.++.+-+ .+.....
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 345699999999999776665531 1 146899998 5555554322 1111100
Q ss_pred --------cCCCCeEEEEcCCCC-CC-CC---CCCccEEEeccc-ccCCCC--HHHHHHHHHHhhcCCCeeEE
Q 020988 216 --------ILTSNLALVRADVCR-LP-FA---SGFVDAVHAGAA-LHCWPS--PSNAASVFSSSYSLLSICYL 272 (319)
Q Consensus 216 --------~~~~~i~~~~~d~~~-lp-~~---~~~fD~V~~~~v-l~h~~d--~~~~l~el~rvlk~g~~~g~ 272 (319)
...-.++++.+|+.+ ++ +. +..+|+++.-.. -..-++ ...+++.+.+++++++....
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 001246677788754 22 11 478999998442 111111 15678888898888765443
No 406
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.19 E-value=1.6 Score=31.42 Aligned_cols=26 Identities=35% Similarity=0.677 Sum_probs=17.5
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..-|.||+|...+. .-+..+.|||+|
T Consensus 5 ~~~~~CPI~~~~~~--------------dPV~~~~cGh~f 30 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--------------KPVKNKVCGHTY 30 (94)
T ss_dssp SSCCBCTTTCSBCS--------------SEEEESSSCCEE
T ss_pred CcEeECcCcCchhc--------------CCEEcCCCCCee
Confidence 35688999998553 223444588888
No 407
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=75.13 E-value=11 Score=33.56 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=54.8
Q ss_pred hccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--------C
Q 020988 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------F 233 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~ 233 (319)
.. ++.+||-+|+|. |..+.++++.....+|+++|.+++.++.+++.- . . .++ |..+.. .
T Consensus 165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~G-------a-~-~~~--~~~~~~~~~~v~~~~ 232 (348)
T 2d8a_A 165 PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG-------A-D-YVI--NPFEEDVVKEVMDIT 232 (348)
T ss_dssp CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHT-------C-S-EEE--CTTTSCHHHHHHHHT
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-------C-C-EEE--CCCCcCHHHHHHHHc
Confidence 44 789999999964 777777777643238999999998888887531 1 1 122 222111 1
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
....+|+|+..-. . ...+++..++++++|
T Consensus 233 ~g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G 261 (348)
T 2d8a_A 233 DGNGVDVFLEFSG-----A-PKALEQGLQAVTPAG 261 (348)
T ss_dssp TTSCEEEEEECSC-----C-HHHHHHHHHHEEEEE
T ss_pred CCCCCCEEEECCC-----C-HHHHHHHHHHHhcCC
Confidence 1236999976432 2 234666777777654
No 408
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=75.07 E-value=1.7 Score=30.89 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=11.4
Q ss_pred ccCeeeccCCCcccc
Q 020988 57 EGDLFSCPICYEPLI 71 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~ 71 (319)
..+.+.||+|...+.
T Consensus 10 ~~~~~~C~IC~~~~~ 24 (92)
T 3ztg_A 10 IPDELLCLICKDIMT 24 (92)
T ss_dssp CCTTTEETTTTEECS
T ss_pred CCcCCCCCCCChhhc
Confidence 346789999998654
No 409
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=74.77 E-value=1.4 Score=29.20 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=18.3
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCC
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
...+-.||.||+.-..+ -.|++||.
T Consensus 27 ~p~l~~c~~cG~~~~pH--------------~vc~~CG~ 51 (60)
T 2zjr_Z 27 APNLTECPQCHGKKLSH--------------HICPNCGY 51 (60)
T ss_dssp CCCCEECTTTCCEECTT--------------BCCTTTCB
T ss_pred CCCceECCCCCCEeCCc--------------eEcCCCCc
Confidence 45678899999974332 36999993
No 410
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=74.65 E-value=11 Score=34.98 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=45.5
Q ss_pred CCeEEEEcCCc-ChH-HHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccE
Q 020988 167 GGLLVDVSCGS-GLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 240 (319)
Q Consensus 167 ~~~VLDiGcG~-G~~-~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 240 (319)
..+|+=+|+|. |.. +..|.+.+. .|+++|.+++.++.+++. ++.++.+|..+.. ..-...|+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~~~~~----------g~~vi~GDat~~~~L~~agi~~A~~ 71 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV--KMVVLDHDPDHIETLRKF----------GMKVFYGDATRMDLLESAGAAKAEV 71 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEECCHHHHHHHHHT----------TCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHhC----------CCeEEEcCCCCHHHHHhcCCCccCE
Confidence 46788888864 433 333444454 899999999998887752 5668899997742 22356888
Q ss_pred EEec
Q 020988 241 VHAG 244 (319)
Q Consensus 241 V~~~ 244 (319)
|++.
T Consensus 72 viv~ 75 (413)
T 3l9w_A 72 LINA 75 (413)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8774
No 411
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=74.31 E-value=1.7 Score=35.61 Aligned_cols=31 Identities=26% Similarity=0.763 Sum_probs=23.8
Q ss_pred eeeccC--CCccccccCCCCCcccceecCceeeCccCCccccC
Q 020988 60 LFSCPI--CYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK 100 (319)
Q Consensus 60 ~l~CP~--C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~ 100 (319)
+-.||. |+..+..... +.++|+.|+..++..
T Consensus 43 Y~aC~~~~CnKKv~~~~~----------g~~~CekC~~~~~~~ 75 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQN----------GLYRCEKCDTEFPNF 75 (181)
T ss_dssp EEBCCSTTCCCBCEEETT----------TEEEETTTTEEESSC
T ss_pred ECCCCchhcCCccccCCC----------CeEECCCCCCcCCCc
Confidence 678999 9998764332 678999999887543
No 412
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=74.21 E-value=0.95 Score=34.71 Aligned_cols=13 Identities=23% Similarity=0.800 Sum_probs=10.6
Q ss_pred CceeeCccCCccc
Q 020988 86 SGFKCRKCDKTYS 98 (319)
Q Consensus 86 ~~~~C~~Cg~~f~ 98 (319)
..+.|+.||..+.
T Consensus 35 ~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 35 HGLYCVHCEESIM 47 (133)
T ss_dssp EEEEESSSSCEEC
T ss_pred ceeECCCCCCEee
Confidence 4779999999873
No 413
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=74.09 E-value=13 Score=32.37 Aligned_cols=78 Identities=26% Similarity=0.251 Sum_probs=57.7
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-----C--
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A-- 234 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~-- 234 (319)
..++++|=.|++.| .++..+++.|. +|+.+|.++..++.+.+.+... ..++.++.+|+.+..- .
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQ----GFDAHGVVCDVRHLDEMVRLADEA 102 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHH
Confidence 45778999998866 35566777776 9999999999888887777653 3578899999987431 0
Q ss_pred ---CCCccEEEeccccc
Q 020988 235 ---SGFVDAVHAGAALH 248 (319)
Q Consensus 235 ---~~~fD~V~~~~vl~ 248 (319)
-+..|+++.+..+.
T Consensus 103 ~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHSSCSEEEECCCCC
T ss_pred HHhCCCCCEEEECCCcC
Confidence 13789999876543
No 414
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=74.08 E-value=1.4 Score=37.47 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=20.8
Q ss_pred eeeccCCCc-cccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~-~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
-.-||.||+ +|..-+. .-.-.-+.|++|+..|
T Consensus 34 n~yCPnCG~~~l~~f~n------N~PVaDF~C~~C~Eey 66 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFEN------NRPVADFYCNHCSEEF 66 (257)
T ss_dssp HCCCTTTCCSSCEEC----------CCCEEECTTTCCEE
T ss_pred CCcCCCCCChhhhhccC------CCcccccccCCcchhh
Confidence 356999999 5533221 1112568999999999
No 415
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=73.83 E-value=1.6 Score=35.49 Aligned_cols=28 Identities=14% Similarity=0.457 Sum_probs=22.0
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
-+..||.|+..+..... +.++|+.|+..
T Consensus 41 ~Y~ACp~CnKKV~~~~~----------g~~~CekC~~~ 68 (172)
T 3u50_C 41 YYYRCTCQGKSVLKYHG----------DSFFCESCQQF 68 (172)
T ss_dssp EEEECTTSCCCEEEETT----------TEEEETTTTEE
T ss_pred EehhchhhCCEeeeCCC----------CeEECCCCCCC
Confidence 36789999998763332 78999999987
No 416
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=73.48 E-value=2.6 Score=28.07 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=22.7
Q ss_pred cCeeeccCCCccccccCCCCCc-ccceecCceeeCccCCcccc
Q 020988 58 GDLFSCPICYEPLIRKGPTGLT-LGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~-~~~i~~~~~~C~~Cg~~f~~ 99 (319)
...+.|+.|+..+.....-... ........+.|..|+..|..
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 4568999999754221000000 00000145899999999844
No 417
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=73.04 E-value=13 Score=33.43 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=30.1
Q ss_pred CCeEEEEcCCc-ChHHHHHHhh-CCCCeEEEEeCCH---HHHHHHHH
Q 020988 167 GGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSE---NMLRQCYD 208 (319)
Q Consensus 167 ~~~VLDiGcG~-G~~~~~l~~~-g~~~~v~gvD~s~---~~l~~a~~ 208 (319)
+.+||-+|+|. |..+.++++. |. +|+++|.++ +-++.+++
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~~ 225 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL--EVWMANRREPTEVEQTVIEE 225 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC--EEEEEESSCCCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCccchHHHHHHHH
Confidence 89999999853 5566666554 54 999999988 76777664
No 418
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=72.99 E-value=8.9 Score=32.43 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+...+. ...++.++.+|+.+.. +.
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNK-HVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCT-TSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcc-ccCcceEEeccCCCHHHHHHHHHHHH
Confidence 4678898888776 35667777777 999999999888877776654310 1156788999998743 10
Q ss_pred --CCCccEEEeccccc
Q 020988 235 --SGFVDAVHAGAALH 248 (319)
Q Consensus 235 --~~~fD~V~~~~vl~ 248 (319)
-+..|+++.+..+.
T Consensus 83 ~~~g~iD~lvnnAg~~ 98 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMF 98 (250)
T ss_dssp HHHCCEEEEEECCCCC
T ss_pred HhcCCCCEEEECCCcC
Confidence 14789999877553
No 419
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=72.96 E-value=1.9 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=20.6
Q ss_pred eeeccCCCccccccCCCCCc-ccceecCceeeCccCCcccc
Q 020988 60 LFSCPICYEPLIRKGPTGLT-LGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~-~~~i~~~~~~C~~Cg~~f~~ 99 (319)
.+.|+.|+..+.....-... ........+.|+.|+..|..
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 47899999754221000000 00000145899999998843
No 420
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=72.91 E-value=9.2 Score=32.38 Aligned_cols=77 Identities=13% Similarity=0.090 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAA----GGRIVARSLDARNEDEVTAFLNAAD 79 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECcCCCHHHHHHHHHHHH
Confidence 4678898888876 35566677777 9999999998888777776653 357889999997743 00
Q ss_pred -CCCccEEEeccccc
Q 020988 235 -SGFVDAVHAGAALH 248 (319)
Q Consensus 235 -~~~fD~V~~~~vl~ 248 (319)
.+..|+++.+..+.
T Consensus 80 ~~g~id~lv~nAg~~ 94 (252)
T 3h7a_A 80 AHAPLEVTIFNVGAN 94 (252)
T ss_dssp HHSCEEEEEECCCCC
T ss_pred hhCCceEEEECCCcC
Confidence 14789999876553
No 421
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=72.78 E-value=7.6 Score=34.49 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=57.7
Q ss_pred hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC--C--CCC
Q 020988 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASG 236 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~~ 236 (319)
....++.+||-+|+|. |.++.++++.. ..+|+++|.+++.++.+++.- .. .++..+-.++. + ..+
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG--------a~-~~i~~~~~~~~~~~~~~~g 231 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLG--------AE-VAVNARDTDPAAWLQKEIG 231 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT--------CS-EEEETTTSCHHHHHHHHHS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcC--------CC-EEEeCCCcCHHHHHHHhCC
Confidence 3557889999999985 88888888764 349999999999888887631 11 12221111110 0 113
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 237 FVDAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 237 ~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
.+|+|+-.. .. ...++...++++++|..
T Consensus 232 ~~d~vid~~-----g~-~~~~~~~~~~l~~~G~i 259 (340)
T 3s2e_A 232 GAHGVLVTA-----VS-PKAFSQAIGMVRRGGTI 259 (340)
T ss_dssp SEEEEEESS-----CC-HHHHHHHHHHEEEEEEE
T ss_pred CCCEEEEeC-----CC-HHHHHHHHHHhccCCEE
Confidence 688887542 22 23466777777766543
No 422
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=72.71 E-value=1.6 Score=37.54 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=18.3
Q ss_pred eeeccCCCcc--ccccCCCCCcccceecCceeeCccCCc
Q 020988 60 LFSCPICYEP--LIRKGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 60 ~l~CP~C~~~--l~~~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
-..||.|++. +..... +.+.|.+||+.
T Consensus 14 ~~~CP~Cg~~d~~~~~~d----------g~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLFSD----------GHTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSCEEEETT----------SCEEETTTCCE
T ss_pred CCcCCCCCCCCCceEeCC----------CCeecccCCCc
Confidence 5689999983 222211 34899999985
No 423
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=72.63 E-value=1.3 Score=35.79 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=20.2
Q ss_pred eeeccCCCcc---ccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEP---LIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~---l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
...||.|++. +.... .++-..|.+||.+.
T Consensus 21 ~~~CPECGs~~t~IV~D~---------erGE~VCsdCGLVL 52 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERF---------SEGDVVCALCGLVL 52 (197)
T ss_dssp CCCCTTTCCSSCCEEEEG---------GGTEEEETTTCBBC
T ss_pred CeECcCCCCcCCeEEEeC---------CCCEEEEcCCCCCc
Confidence 3489999982 43321 23678999999876
No 424
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=72.60 E-value=2.3 Score=26.52 Aligned_cols=34 Identities=15% Similarity=0.372 Sum_probs=20.3
Q ss_pred eeccCCCccccc------cCCCCCcccceecCceeeCccCCcccc
Q 020988 61 FSCPICYEPLIR------KGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 61 l~CP~C~~~l~~------~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
+.|+.|+..+.. .... - .....+.|+.|+..|..
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~-h----~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRT-H----TDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHH-T----SSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCHHHHHHHHHh-c----CCCCCccCCCCCchhcC
Confidence 579999974321 1000 0 00145899999999854
No 425
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=72.41 E-value=9.8 Score=33.54 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=35.3
Q ss_pred hhccCCCeEEEEc-CC-cChHHHHHHhh-CCCCeEEEEeCCHHHHHHHHHH
Q 020988 162 FKSAQGGLLVDVS-CG-SGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDF 209 (319)
Q Consensus 162 l~~~~~~~VLDiG-cG-~G~~~~~l~~~-g~~~~v~gvD~s~~~l~~a~~~ 209 (319)
....++.+||-+| +| .|..+.++++. |. +|+++|.+++-++.+++.
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~~ 184 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKALGA--KLIGTVSSPEKAAHAKAL 184 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc
Confidence 3456789999998 33 57777777765 44 999999999988888753
No 426
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=72.19 E-value=6.8 Score=34.96 Aligned_cols=90 Identities=12% Similarity=-0.036 Sum_probs=55.3
Q ss_pred hhccCCCeEEEEcC--CcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------C
Q 020988 162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F 233 (319)
Q Consensus 162 l~~~~~~~VLDiGc--G~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~ 233 (319)
....++.+||-+|+ |.|..+.++++.. ..+|+++|.+++.++.+++.- . . .++..+ .++. .
T Consensus 155 ~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g-------a-~-~v~~~~-~~~~~~v~~~~ 223 (342)
T 4eye_A 155 GQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVG-------A-D-IVLPLE-EGWAKAVREAT 223 (342)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHT-------C-S-EEEESS-TTHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcC-------C-c-EEecCc-hhHHHHHHHHh
Confidence 34567899999997 3577777777763 249999999998888877631 1 1 222222 2211 1
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
....+|+|+-.-.-. .++...++++++|.
T Consensus 224 ~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~ 252 (342)
T 4eye_A 224 GGAGVDMVVDPIGGP-------AFDDAVRTLASEGR 252 (342)
T ss_dssp TTSCEEEEEESCC---------CHHHHHHTEEEEEE
T ss_pred CCCCceEEEECCchh-------HHHHHHHhhcCCCE
Confidence 223799998654321 34556666666543
No 427
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=72.11 E-value=9.6 Score=33.72 Aligned_cols=90 Identities=13% Similarity=0.161 Sum_probs=54.8
Q ss_pred hccCCCeEEEEcC--CcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------CC
Q 020988 163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA 234 (319)
Q Consensus 163 ~~~~~~~VLDiGc--G~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~ 234 (319)
...++.+||-+|+ |.|..+.++++.. ..+|+++|.+++.++.+++.- .. .++..+-.++. ..
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g--------a~-~~~~~~~~~~~~~~~~~~~ 214 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYG--------AE-YLINASKEDILRQVLKFTN 214 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT--------CS-EEEETTTSCHHHHHHHHTT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC--------Cc-EEEeCCCchHHHHHHHHhC
Confidence 4568899999994 3577777777663 349999999998888776521 11 12222111110 11
Q ss_pred CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 235 SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 235 ~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
...+|+|+-+-.- ..++...++++++|.
T Consensus 215 ~~g~D~vid~~g~-------~~~~~~~~~l~~~G~ 242 (334)
T 3qwb_A 215 GKGVDASFDSVGK-------DTFEISLAALKRKGV 242 (334)
T ss_dssp TSCEEEEEECCGG-------GGHHHHHHHEEEEEE
T ss_pred CCCceEEEECCCh-------HHHHHHHHHhccCCE
Confidence 3469999865432 235566677766543
No 428
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.87 E-value=3.2 Score=28.63 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=13.9
Q ss_pred ccccccccCeeeccCCCccc
Q 020988 51 NQTLELEGDLFSCPICYEPL 70 (319)
Q Consensus 51 ~~~~~~~~~~l~CP~C~~~l 70 (319)
..........+.||+|...+
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~ 25 (81)
T 2csy_A 6 SGGSEEEEIPFRCFICRQAF 25 (81)
T ss_dssp CCCSSCCCCCSBCSSSCSBC
T ss_pred CCCcccCCCCCCCcCCCchh
Confidence 33344455678999999865
No 429
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=71.71 E-value=4.1 Score=25.26 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=21.7
Q ss_pred cCeeeccCCCcccc------ccCCCCCcccceecCceeeCccCCccc
Q 020988 58 GDLFSCPICYEPLI------RKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 58 ~~~l~CP~C~~~l~------~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
...+.|+.|+..+. .+....- .....+.|+.|+..|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H----~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQVH----TSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTS----CCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhc----CCCCCccCCCCCCCCC
Confidence 34589999997432 1110000 0124679999999884
No 430
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=71.67 E-value=14 Score=31.88 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-C----C----
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P----F---- 233 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p----~---- 233 (319)
.++++|=.|++.| .++..+++.|. +|++++.++...+.+.+.+... ...++.++.+|+.+. . +
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNS---NHENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT---TCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEccCCCcHHHHHHHHHHH
Confidence 4678888888765 25566666676 9999999998887777776553 235789999999875 2 0
Q ss_pred --CCCCccEEEeccccc
Q 020988 234 --ASGFVDAVHAGAALH 248 (319)
Q Consensus 234 --~~~~fD~V~~~~vl~ 248 (319)
.-+..|+++.+..+.
T Consensus 86 ~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHSSCCEEEECCCCC
T ss_pred HHhCCCCCEEEECCccc
Confidence 014789999877654
No 431
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=71.65 E-value=1.7 Score=31.65 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=18.4
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..+.+.||+|...+.. ...|..|||.|
T Consensus 19 l~~~~~C~IC~~~~~~--------------p~~~~~CgH~F 45 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRD--------------ARLCPHCSKLC 45 (100)
T ss_dssp HHHHTBCTTTCSBCSS--------------EEECTTTCCEE
T ss_pred CCCCCCCccCCccccC--------------ccccCCCCChh
Confidence 3467889999996641 23456677777
No 432
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=71.61 E-value=47 Score=28.70 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCcChHH----HHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEE-EcCCCCCCC-C--CCC
Q 020988 166 QGGLLVDVSCGSGLFS----RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLPF-A--SGF 237 (319)
Q Consensus 166 ~~~~VLDiGcG~G~~~----~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp~-~--~~~ 237 (319)
++++||=.|+. |..+ ..|.+.|. +|++++.++...+...+.+... ...++.++ .+|+.+... . -..
T Consensus 10 ~~~~vlVTGat-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~ 83 (342)
T 1y1p_A 10 EGSLVLVTGAN-GFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAK---YPGRFETAVVEDMLKQGAYDEVIKG 83 (342)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHH---STTTEEEEECSCTTSTTTTTTTTTT
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhcc---CCCceEEEEecCCcChHHHHHHHcC
Confidence 46789988763 4444 44555566 9999999887655544433221 12468888 788876431 1 126
Q ss_pred ccEEEecccccC
Q 020988 238 VDAVHAGAALHC 249 (319)
Q Consensus 238 fD~V~~~~vl~h 249 (319)
+|+|+......+
T Consensus 84 ~d~vih~A~~~~ 95 (342)
T 1y1p_A 84 AAGVAHIASVVS 95 (342)
T ss_dssp CSEEEECCCCCS
T ss_pred CCEEEEeCCCCC
Confidence 899998765443
No 433
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=71.38 E-value=12 Score=31.26 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=52.5
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----C-CC
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS 235 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~ 235 (319)
.++++||=.|++.| .++..+++.|. +|+.+|.+++.++...+.+ ..++.+..+|+.+.. + ..
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 82 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNAL-------KDNYTIEVCNLANKEECSNLISKT 82 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CSSEEEEECCTTSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHh-------ccCccEEEcCCCCHHHHHHHHHhc
Confidence 46788998888765 25566666676 9999999998877766654 247888889987632 1 12
Q ss_pred CCccEEEeccccc
Q 020988 236 GFVDAVHAGAALH 248 (319)
Q Consensus 236 ~~fD~V~~~~vl~ 248 (319)
+..|+++.+..+.
T Consensus 83 ~~id~li~~Ag~~ 95 (249)
T 3f9i_A 83 SNLDILVCNAGIT 95 (249)
T ss_dssp SCCSEEEECCC--
T ss_pred CCCCEEEECCCCC
Confidence 4689999876543
No 434
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=71.19 E-value=2.3 Score=26.44 Aligned_cols=35 Identities=11% Similarity=0.368 Sum_probs=17.7
Q ss_pred eeeccCCCcccccc-CCCCCcccceecCceeeCccCCc
Q 020988 60 LFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 60 ~l~CP~C~~~l~~~-~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
.++|++||--.... +.. ...+.+. ..+.|+.||..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~-t~f~~lP-~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN-VPFDQLP-DDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTT-CCGGGSC-TTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCC-cchhhCC-CCCcCcCCCCc
Confidence 46888888633211 100 1111221 34688888863
No 435
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=71.00 E-value=4.6 Score=28.35 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=21.6
Q ss_pred cCeeeccCCCccccc-------cCCCCCcccceecCceeeCccCC
Q 020988 58 GDLFSCPICYEPLIR-------KGPTGLTLGAIYRSGFKCRKCDK 95 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~-------~~~~~~~~~~i~~~~~~C~~Cg~ 95 (319)
...+.|++|+--... ..+++...+.+. ..+.|+.||.
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlP-ddW~CPvCga 68 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIP-DDWSCPDCGA 68 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSC-TTCCCTTTCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCC-CCCcCCCCCC
Confidence 468999999963221 111222233332 4678999997
No 436
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=70.96 E-value=2 Score=28.35 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=17.4
Q ss_pred cCeeeccCCCccccccCCCCCcccceecCceeeCccC
Q 020988 58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD 94 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg 94 (319)
..+-.||.||+.-..+ -.|++||
T Consensus 28 p~l~~c~~cGe~~~~H--------------~vc~~CG 50 (60)
T 3v2d_5 28 PTLVPCPECKAMKPPH--------------TVCPECG 50 (60)
T ss_dssp CCCEECTTTCCEECTT--------------SCCTTTC
T ss_pred CceeECCCCCCeecce--------------EEcCCCC
Confidence 4588899999965433 2599999
No 437
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=70.90 E-value=16 Score=30.88 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=56.5
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-----C--
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A-- 234 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~-- 234 (319)
..++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+... .
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 83 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQA----GGKAIGLECNVTDEQHREAVIKAA 83 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence 35678888888766 25566777777 8999999998888777766553 4578899999977431 0
Q ss_pred ---CCCccEEEeccccc
Q 020988 235 ---SGFVDAVHAGAALH 248 (319)
Q Consensus 235 ---~~~fD~V~~~~vl~ 248 (319)
-+..|+++.+..+.
T Consensus 84 ~~~~g~id~lv~nAg~~ 100 (256)
T 3gaf_A 84 LDQFGKITVLVNNAGGG 100 (256)
T ss_dssp HHHHSCCCEEEECCCCC
T ss_pred HHHcCCCCEEEECCCCC
Confidence 13789999876554
No 438
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=70.79 E-value=2.5 Score=26.54 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=17.9
Q ss_pred eeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
...||+|...+.... .....+.|||.|
T Consensus 5 ~~~C~IC~~~~~~~~-----------~~~~~~~C~H~f 31 (55)
T 1iym_A 5 GVECAVCLAELEDGE-----------EARFLPRCGHGF 31 (55)
T ss_dssp SCCCTTTCCCCCTTS-----------CCEECSSSCCEE
T ss_pred CCcCccCCccccCCC-----------ceEECCCCCCcc
Confidence 457999998775432 233455688887
No 439
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=70.42 E-value=14 Score=31.36 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=55.2
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC--
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 234 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 234 (319)
..++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~ 100 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAA----GGEAESHACDLSHSDAIAAFATGV 100 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHh----CCceeEEEecCCCHHHHHHHHHHH
Confidence 45678998887655 24555666676 8999999998888877776553 357888999997643 10
Q ss_pred ---CCCccEEEecccc
Q 020988 235 ---SGFVDAVHAGAAL 247 (319)
Q Consensus 235 ---~~~fD~V~~~~vl 247 (319)
-+..|+|+.+..+
T Consensus 101 ~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 101 LAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHSCCSEEEECCCC
T ss_pred HHhcCCCCEEEECCCc
Confidence 1468999987655
No 440
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=70.12 E-value=14 Score=28.34 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=41.7
Q ss_pred CCeEEEEcCCc-Ch-HHHHHHhhCCCCeEEEEeCC-HHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCcc
Q 020988 167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVD 239 (319)
Q Consensus 167 ~~~VLDiGcG~-G~-~~~~l~~~g~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD 239 (319)
..+|+=+|+|. |. +...+.+.+. .|+.+|.+ ++.++...+.. ..++.++.+|..+.. ..-...|
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~-------~~~~~~i~gd~~~~~~l~~a~i~~ad 73 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRL-------GDNADVIPGDSNDSSVLKKAGIDRCR 73 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHH-------CTTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhh-------cCCCeEEEcCCCCHHHHHHcChhhCC
Confidence 35788888753 22 2333444455 89999997 45444444332 236788999986532 1134688
Q ss_pred EEEec
Q 020988 240 AVHAG 244 (319)
Q Consensus 240 ~V~~~ 244 (319)
+|++.
T Consensus 74 ~vi~~ 78 (153)
T 1id1_A 74 AILAL 78 (153)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88875
No 441
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.98 E-value=4.5 Score=26.67 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=22.3
Q ss_pred cCeeeccCCCccccc------cCCCCCcccceecCceeeCccCCcccc
Q 020988 58 GDLFSCPICYEPLIR------KGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~------~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
...+.|+.|+..+.. .... ......+.|+.|+..|..
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~-----h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRV-----HTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHG-----GGCSCCEECSSSCCEESS
T ss_pred CCCccCCCCCCccCCHHHHHHHHHh-----cCCCCCeECCCCCcccCC
Confidence 346899999974321 1100 001246899999998843
No 442
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=69.94 E-value=17 Score=30.34 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----------
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------- 232 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------- 232 (319)
.++++|=.|++.| .++..+++.|. +|+.++.++...+...+.++.. ..++.++.+|+.+..
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEK----GFKARGLVLNISDIESIQNFFAEIK 77 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 3568888887665 35566667776 9999999998888777766553 357889999997642
Q ss_pred CCCCCccEEEeccccc
Q 020988 233 FASGFVDAVHAGAALH 248 (319)
Q Consensus 233 ~~~~~fD~V~~~~vl~ 248 (319)
-..+..|+++.+..+.
T Consensus 78 ~~~~~id~li~~Ag~~ 93 (247)
T 3lyl_A 78 AENLAIDILVNNAGIT 93 (247)
T ss_dssp HTTCCCSEEEECCCCC
T ss_pred HHcCCCCEEEECCCCC
Confidence 0124689999876544
No 443
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=69.91 E-value=7.6 Score=34.57 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=57.7
Q ss_pred hccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----C-CC
Q 020988 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS 235 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~ 235 (319)
...++.+||-+|+|. |.++.++++.....+|+++|.+++-++.+++.- . . .++..+- ++. . ..
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lG-------a-~-~~i~~~~-~~~~~v~~~t~g 237 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVG-------A-D-AAVKSGA-GAADAIRELTGG 237 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTT-------C-S-EEEECST-THHHHHHHHHGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-------C-C-EEEcCCC-cHHHHHHHHhCC
Confidence 456889999999975 788888887632459999999999888887631 1 1 1222111 110 0 12
Q ss_pred CCccEEEecccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 236 GFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 236 ~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
..+|+|+-. ...+ ..++...++++++|.
T Consensus 238 ~g~d~v~d~-----~G~~-~~~~~~~~~l~~~G~ 265 (345)
T 3jv7_A 238 QGATAVFDF-----VGAQ-STIDTAQQVVAVDGH 265 (345)
T ss_dssp GCEEEEEES-----SCCH-HHHHHHHHHEEEEEE
T ss_pred CCCeEEEEC-----CCCH-HHHHHHHHHHhcCCE
Confidence 378988653 3333 356777777776654
No 444
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=69.63 E-value=2.7 Score=26.54 Aligned_cols=34 Identities=21% Similarity=0.671 Sum_probs=20.6
Q ss_pred eeccCCCccccc------cCCCCCcccceecCceeeCccCCcccc
Q 020988 61 FSCPICYEPLIR------KGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 61 l~CP~C~~~l~~------~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
+.|+.|+..+.. +.... . ....+.|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h-~----~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSH-T----NEKPYPCGLCNRAFTR 42 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTT-T----SSCSEECTTTCCEESS
T ss_pred CcCCCCccccCCHHHHHHHHHHh-C----CCCCccCCCCCCccCC
Confidence 689999974321 11000 0 0146899999999854
No 445
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=69.41 E-value=16 Score=31.06 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .+...+++.|. +|+.+|.++...+...+.+... ..++.++.+|+.+.. +.
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 106 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTY----GVHSKAYKCNISDPKSVEETISQQE 106 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHH----CSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcceEEEeecCCHHHHHHHHHHHH
Confidence 4678888887665 35566677776 8999998775555444443332 246888999987642 11
Q ss_pred --CCCccEEEeccccc
Q 020988 235 --SGFVDAVHAGAALH 248 (319)
Q Consensus 235 --~~~fD~V~~~~vl~ 248 (319)
-+.+|+|+.+..+.
T Consensus 107 ~~~g~id~li~~Ag~~ 122 (279)
T 3ctm_A 107 KDFGTIDVFVANAGVT 122 (279)
T ss_dssp HHHSCCSEEEECGGGS
T ss_pred HHhCCCCEEEECCccc
Confidence 13589999876543
No 446
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=69.40 E-value=3.5 Score=26.57 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=19.5
Q ss_pred eeeccCCCccccc-------cCCCCCcccceecCceeeCccCCc
Q 020988 60 LFSCPICYEPLIR-------KGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 60 ~l~CP~C~~~l~~-------~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
.++|++|+--... ..+++...+.+. ..+.|+.||..
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP-~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIP-DDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCC-CCCcCcCCCCc
Confidence 4688899852211 112233333443 45789998863
No 447
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=69.24 E-value=2.3 Score=37.08 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=22.1
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
..--||.||+++..... .....|++||..+
T Consensus 106 ~~~fC~~CG~~~~~~~~---------~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKT---------EWAMLCSHCRERY 135 (269)
T ss_dssp TTSBCTTTCCBEEECSS---------SSCEEESSSSCEE
T ss_pred cCCccccCCCcCccCCC---------ceeeeCCCCCCEe
Confidence 45679999998755332 2467899999976
No 448
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=69.11 E-value=19 Score=30.89 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAA----GHDVDGSSCDVTSTDEVHAAVAAAV 96 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4678999998765 35566677776 9999999998888777776553 357889999997743 10
Q ss_pred --CCCccEEEeccccc
Q 020988 235 --SGFVDAVHAGAALH 248 (319)
Q Consensus 235 --~~~fD~V~~~~vl~ 248 (319)
-+..|+++.+..+.
T Consensus 97 ~~~g~id~lv~nAg~~ 112 (279)
T 3sju_A 97 ERFGPIGILVNSAGRN 112 (279)
T ss_dssp HHHCSCCEEEECCCCC
T ss_pred HHcCCCcEEEECCCCC
Confidence 14789999876544
No 449
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=69.06 E-value=14 Score=31.25 Aligned_cols=76 Identities=24% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+.+|.+++.++.+.+.+... ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQF----PGQILTVQMDVRNTDDIQKMIEQID 78 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCS----TTCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4578888887665 25566667776 8999999999888887776542 357889999997742 00
Q ss_pred --CCCccEEEecccc
Q 020988 235 --SGFVDAVHAGAAL 247 (319)
Q Consensus 235 --~~~fD~V~~~~vl 247 (319)
-+..|+++.+..+
T Consensus 79 ~~~g~id~lv~nAg~ 93 (257)
T 3imf_A 79 EKFGRIDILINNAAG 93 (257)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 1368999987654
No 450
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=68.95 E-value=3.4 Score=27.66 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=24.3
Q ss_pred eeccCCCccc-cccCCCCCcccceecCceeeCccCCcccc-CCceeeec
Q 020988 61 FSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTYSS-KDNYLDLT 107 (319)
Q Consensus 61 l~CP~C~~~l-~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~-~~g~~~~~ 107 (319)
.+||-|+... ....+ ...+.|..||..... ..|-..+.
T Consensus 8 VKCp~C~niq~VFShA---------~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHP---------STIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EECTTTCCEEEEESSC---------SSCEECSSSCCEEEECCSSSCEEC
T ss_pred EECCCCCCceEEEecC---------ceEEEcccCCCEEeecCCcceeee
Confidence 4799999843 33222 267899999999843 34444443
No 451
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.88 E-value=3.2 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=21.4
Q ss_pred cccccCeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.....+.+.||+|...+...... .....-..|||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~--------~~~~~~~~CgH~f 44 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQN--------GRLIVSTECGHVF 44 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTT--------TCCEEECSSSCEE
T ss_pred ccCCCCCCCCcccCccccccccc--------cCCeEeCCCCChh
Confidence 33445678899999976543110 0223445688887
No 452
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=68.81 E-value=11 Score=33.67 Aligned_cols=95 Identities=13% Similarity=-0.028 Sum_probs=59.3
Q ss_pred HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC-CCCC------
Q 020988 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP------ 232 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp------ 232 (319)
.....++.+||-+|+|. |.++.++++.. ..+|+++|.+++.++.+++.- . . .++..+- .++.
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG-------a-~-~~~~~~~~~~~~~~i~~~ 232 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCG-------A-D-VTLVVDPAKEEESSIIER 232 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT-------C-S-EEEECCTTTSCHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC-------C-C-EEEcCcccccHHHHHHHH
Confidence 34567889999999875 77777777753 237999999999888887521 1 1 2222110 1110
Q ss_pred CC---CCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 233 FA---SGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 233 ~~---~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
.. .+.+|+|+-. ... ...++...++++++|...
T Consensus 233 ~~~~~g~g~D~vid~-----~g~-~~~~~~~~~~l~~~G~iv 268 (352)
T 1e3j_A 233 IRSAIGDLPNVTIDC-----SGN-EKCITIGINITRTGGTLM 268 (352)
T ss_dssp HHHHSSSCCSEEEEC-----SCC-HHHHHHHHHHSCTTCEEE
T ss_pred hccccCCCCCEEEEC-----CCC-HHHHHHHHHHHhcCCEEE
Confidence 01 2469999754 222 234677788888887544
No 453
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=68.63 E-value=6.6 Score=35.46 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=58.9
Q ss_pred hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC-C-CCCC-----C
Q 020988 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-V-CRLP-----F 233 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d-~-~~lp-----~ 233 (319)
....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.- . . .++..+ . .++. .
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lG-------a-~-~vi~~~~~~~~~~~~~~~~ 258 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG-------A-T-DFVNPNDHSEPISQVLSKM 258 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT-------C-C-EEECGGGCSSCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhC-------C-c-eEEeccccchhHHHHHHHH
Confidence 3456789999999875 777778877643237999999999888887521 1 1 122111 0 1110 1
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCC-CeeE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL-SICY 271 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g-~~~g 271 (319)
..+.+|+|+-. ... ...++...++++++ |...
T Consensus 259 ~~~g~D~vid~-----~g~-~~~~~~~~~~l~~~~G~iv 291 (374)
T 1cdo_A 259 TNGGVDFSLEC-----VGN-VGVMRNALESCLKGWGVSV 291 (374)
T ss_dssp HTSCBSEEEEC-----SCC-HHHHHHHHHTBCTTTCEEE
T ss_pred hCCCCCEEEEC-----CCC-HHHHHHHHHHhhcCCcEEE
Confidence 12379998753 322 23567788888887 6543
No 454
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=68.38 E-value=2.3 Score=32.13 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=22.2
Q ss_pred ccCeeeccCCCccccccCCCCCcccceecCce-eeCccCCcc
Q 020988 57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGF-KCRKCDKTY 97 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~-~C~~Cg~~f 97 (319)
..-.+.|..||....... ... .||.||+..
T Consensus 70 ~p~~~~C~~CG~~~e~~~-----------~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNA-----------LDYGVCEKCHSKN 100 (119)
T ss_dssp ECCEEECSSSSCEECSCC-----------STTCCCSSSSSCC
T ss_pred ccceEEcCCCCCEEeCCC-----------CCCCcCccccCCC
Confidence 446899999999765433 346 899999864
No 455
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=68.27 E-value=23 Score=29.61 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+++|.++...+...+.+... ..++.++.+|+.+.. +.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 85 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRME----GHDVSSVVMDVTNTESVQNAVRSVH 85 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 4678888887654 24455566666 9999999987766665555442 347889999997642 11
Q ss_pred --CCCccEEEecccc
Q 020988 235 --SGFVDAVHAGAAL 247 (319)
Q Consensus 235 --~~~fD~V~~~~vl 247 (319)
-+..|+|+.+..+
T Consensus 86 ~~~~~id~vi~~Ag~ 100 (260)
T 3awd_A 86 EQEGRVDILVACAGI 100 (260)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 1368999987654
No 456
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.95 E-value=1.5 Score=28.82 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=26.0
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCccccCCc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f~~~~g 102 (319)
..+.|+.|+..+..... +.. ...+.|+.|+..|.....
T Consensus 17 ~~~~C~~C~k~f~~~~~--l~~----~~~~~C~~C~~~f~~~~~ 54 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRST--LSR----RKTPMCEKCRKDSCQEAA 54 (73)
T ss_dssp SEEECSSSCCEEECCCC--CCC----SSSCCCHHHHHTCSCCCS
T ss_pred CCeeCCcccchhCCHHH--hCc----CCCCCCCCCChhhcCHHH
Confidence 45899999987654432 111 356899999999965443
No 457
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=67.90 E-value=22 Score=30.65 Aligned_cols=77 Identities=23% Similarity=0.230 Sum_probs=55.1
Q ss_pred cCCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC--
Q 020988 165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 234 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 234 (319)
.+++++|=.|++.|. .+..+++.|. +|+.+|.+.+.++...+.+... ..++.++.+|+.+.. +.
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGA----GGQAIALEADVSDELQMRNAVRDL 99 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHH
Confidence 356788999887652 5566667776 9999999998888777766542 357888999997642 10
Q ss_pred ---CCCccEEEecccc
Q 020988 235 ---SGFVDAVHAGAAL 247 (319)
Q Consensus 235 ---~~~fD~V~~~~vl 247 (319)
-+..|+++.+..+
T Consensus 100 ~~~~g~iD~lVnnAg~ 115 (283)
T 3v8b_A 100 VLKFGHLDIVVANAGI 115 (283)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCCCEEEECCCC
Confidence 1378999987655
No 458
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.86 E-value=4.2 Score=27.33 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=11.6
Q ss_pred ccCeeeccCCCccccc
Q 020988 57 EGDLFSCPICYEPLIR 72 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~~ 72 (319)
......||+|...+..
T Consensus 12 ~~~~~~C~IC~~~~~~ 27 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKP 27 (74)
T ss_dssp CCCSCBCSSSCCBCCS
T ss_pred CCCCCCCcCCCcccCC
Confidence 3445689999997653
No 459
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=67.67 E-value=2.9 Score=28.55 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=10.9
Q ss_pred ccCeeeccCCCccc
Q 020988 57 EGDLFSCPICYEPL 70 (319)
Q Consensus 57 ~~~~l~CP~C~~~l 70 (319)
..+.+.||+|...+
T Consensus 5 ~~~~~~C~IC~~~~ 18 (78)
T 1t1h_A 5 FPEYFRCPISLELM 18 (78)
T ss_dssp CSSSSSCTTTSCCC
T ss_pred CcccCCCCCccccc
Confidence 34578999999865
No 460
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=67.57 E-value=7.3 Score=36.64 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=44.8
Q ss_pred CCeEEEEcCCcChHHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccE
Q 020988 167 GGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA 240 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~~~l~~~g--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~ 240 (319)
.++|+=+||| ..+..+++.. .+..|+.+|.+++.++.+.+++ ++..+.||..+.. ..-+..|+
T Consensus 3 ~M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~---------~~~~i~Gd~~~~~~L~~Agi~~ad~ 71 (461)
T 4g65_A 3 AMKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY---------DLRVVNGHASHPDVLHEAGAQDADM 71 (461)
T ss_dssp CEEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS---------SCEEEESCTTCHHHHHHHTTTTCSE
T ss_pred cCEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc---------CcEEEEEcCCCHHHHHhcCCCcCCE
Confidence 4677777776 4444444432 1238999999999998887654 5678999987743 12356788
Q ss_pred EEe
Q 020988 241 VHA 243 (319)
Q Consensus 241 V~~ 243 (319)
+++
T Consensus 72 ~ia 74 (461)
T 4g65_A 72 LVA 74 (461)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 461
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=67.43 E-value=7.3 Score=35.19 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=59.0
Q ss_pred hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCC--CCC-----CC
Q 020988 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----PF 233 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-----p~ 233 (319)
....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++. . . . .++..+- .++ ..
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-G------a-~-~vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-G------A-T-ECVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-T------C-S-EEECGGGCSSCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-C------C-c-eEecccccchhHHHHHHHH
Confidence 3456889999999875 77777887764323799999999988888642 1 1 1 1221110 111 01
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCC-CeeE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL-SICY 271 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g-~~~g 271 (319)
.++.+|+|+-. ... ...++...++++++ |...
T Consensus 258 ~~~g~D~vid~-----~g~-~~~~~~~~~~l~~~~G~iv 290 (374)
T 2jhf_A 258 SNGGVDFSFEV-----IGR-LDTMVTALSCCQEAYGVSV 290 (374)
T ss_dssp TTSCBSEEEEC-----SCC-HHHHHHHHHHBCTTTCEEE
T ss_pred hCCCCcEEEEC-----CCC-HHHHHHHHHHhhcCCcEEE
Confidence 12479998753 322 23467788888887 6543
No 462
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=67.32 E-value=20 Score=31.80 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=53.9
Q ss_pred CCCeEEEE-cCC-cChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCC-----CCCCCCc
Q 020988 166 QGGLLVDV-SCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV 238 (319)
Q Consensus 166 ~~~~VLDi-GcG-~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f 238 (319)
++.+||-+ |+| .|.++.++++.. ..+|+++|.+++-++.+++.- . . .++..+ .++ ....+.+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG-a------~--~vi~~~-~~~~~~~~~~~~~g~ 218 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMG-A------D--IVLNHK-ESLLNQFKTQGIELV 218 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHT-C------S--EEECTT-SCHHHHHHHHTCCCE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcC-C------c--EEEECC-ccHHHHHHHhCCCCc
Confidence 78999999 455 477777777763 249999999999888887631 1 1 112111 111 0123469
Q ss_pred cEEEecccccCCCCHHHHHHHHHHhhcCCCee
Q 020988 239 DAVHAGAALHCWPSPSNAASVFSSSYSLLSIC 270 (319)
Q Consensus 239 D~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~ 270 (319)
|+|+-. . .....++...++++++|..
T Consensus 219 Dvv~d~-----~-g~~~~~~~~~~~l~~~G~i 244 (346)
T 3fbg_A 219 DYVFCT-----F-NTDMYYDDMIQLVKPRGHI 244 (346)
T ss_dssp EEEEES-----S-CHHHHHHHHHHHEEEEEEE
T ss_pred cEEEEC-----C-CchHHHHHHHHHhccCCEE
Confidence 998763 2 2234466777777766543
No 463
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=67.25 E-value=5.8 Score=35.84 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=58.8
Q ss_pred hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC-C-CCC-----CC
Q 020988 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-V-CRL-----PF 233 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d-~-~~l-----p~ 233 (319)
....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++. . . . .++..+ . .++ ..
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-G------a-~-~vi~~~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-G------A-T-ECLNPKDYDKPIYEVICEK 257 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-T------C-S-EEECGGGCSSCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-C------C-c-EEEecccccchHHHHHHHH
Confidence 3456889999999875 77777777764323799999999988888752 1 1 1 122111 0 111 01
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCC-CeeE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL-SICY 271 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g-~~~g 271 (319)
..+.+|+|+-. ... ...+++..++++++ |...
T Consensus 258 t~gg~Dvvid~-----~g~-~~~~~~~~~~l~~~~G~iv 290 (373)
T 1p0f_A 258 TNGGVDYAVEC-----AGR-IETMMNALQSTYCGSGVTV 290 (373)
T ss_dssp TTSCBSEEEEC-----SCC-HHHHHHHHHTBCTTTCEEE
T ss_pred hCCCCCEEEEC-----CCC-HHHHHHHHHHHhcCCCEEE
Confidence 12479999753 322 23467778888887 6543
No 464
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.24 E-value=5.4 Score=27.66 Aligned_cols=17 Identities=29% Similarity=0.821 Sum_probs=12.4
Q ss_pred cccCeeeccCCCccccc
Q 020988 56 LEGDLFSCPICYEPLIR 72 (319)
Q Consensus 56 ~~~~~l~CP~C~~~l~~ 72 (319)
...+.+.||+|...+..
T Consensus 11 ~~~~~~~C~IC~~~~~~ 27 (88)
T 2ct2_A 11 ALREVLECPICMESFTE 27 (88)
T ss_dssp CCCSCCBCTTTCCBCCT
T ss_pred hccCCCCCccCCccccc
Confidence 34567889999987653
No 465
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=67.17 E-value=24 Score=29.97 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=53.2
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----C---
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F--- 233 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~--- 233 (319)
..++++|=.|++.| .++..+++.|. +|+++|.++..++...+.++.. ..++.++.+|+.+.. +
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhc----CCeEEEEEeeCCCHHHHHHHHHHH
Confidence 35678898887654 24455556666 8999999988777666665542 347889999987642 0
Q ss_pred --CCCCccEEEeccccc
Q 020988 234 --ASGFVDAVHAGAALH 248 (319)
Q Consensus 234 --~~~~fD~V~~~~vl~ 248 (319)
.-+.+|+|+.+..+.
T Consensus 103 ~~~~g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 103 KAEIGDVSILVNNAGVV 119 (272)
T ss_dssp HHHTCCCSEEEECCCCC
T ss_pred HHHCCCCcEEEECCCcC
Confidence 013689999876544
No 466
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=67.07 E-value=17 Score=31.01 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=54.2
Q ss_pred CCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC----------
Q 020988 167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------- 233 (319)
Q Consensus 167 ~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---------- 233 (319)
++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+...
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~ 77 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDA----GGTALAQVLDVTDRHSVAAFAQAAVD 77 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567888887765 25566667776 9999999998888877776553 3567888899876420
Q ss_pred CCCCccEEEeccccc
Q 020988 234 ASGFVDAVHAGAALH 248 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~ 248 (319)
.-+..|+++.+..+.
T Consensus 78 ~~g~iD~lVnnAG~~ 92 (264)
T 3tfo_A 78 TWGRIDVLVNNAGVM 92 (264)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 013689999876554
No 467
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=67.07 E-value=18 Score=32.27 Aligned_cols=92 Identities=14% Similarity=0.004 Sum_probs=54.7
Q ss_pred HHhhccCC--CeEEEEcC--CcChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---
Q 020988 160 EYFKSAQG--GLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--- 232 (319)
Q Consensus 160 ~~l~~~~~--~~VLDiGc--G~G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--- 232 (319)
+.....++ .+||-.|+ |.|....++++.....+|+++|.+++.++.+++.+. .. ..+ |..+..
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g-------~~-~~~--d~~~~~~~~ 221 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELG-------FD-AAI--NYKKDNVAE 221 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC-------CS-EEE--ETTTSCHHH
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC-------Cc-eEE--ecCchHHHH
Confidence 34455678 89999998 456676666665422389999999887777765321 11 112 322211
Q ss_pred ----CCCCCccEEEecccccCCCCHHHHHHHHHHhhcCCC
Q 020988 233 ----FASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLS 268 (319)
Q Consensus 233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~ 268 (319)
...+.+|+|+.+-. ...++...++++++|
T Consensus 222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G 254 (357)
T 2zb4_A 222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENS 254 (357)
T ss_dssp HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEE
T ss_pred HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCc
Confidence 11226899886543 144566666666554
No 468
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=67.07 E-value=19 Score=30.46 Aligned_cols=78 Identities=24% Similarity=0.247 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-----C---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~--- 234 (319)
.++++|=.|++.| ..+..+++.|. +|+.+|.+++.++...+.+... ...++.++.+|+.+..- .
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQL---GSGKVIGVQTDVSDRAQCDALAGRAV 83 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT---SSSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhh---CCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4678888887665 25556666676 9999999998888777776553 12578899999977431 0
Q ss_pred --CCCccEEEeccccc
Q 020988 235 --SGFVDAVHAGAALH 248 (319)
Q Consensus 235 --~~~fD~V~~~~vl~ 248 (319)
-+..|+++.+..+.
T Consensus 84 ~~~g~id~lvnnAg~~ 99 (262)
T 3pk0_A 84 EEFGGIDVVCANAGVF 99 (262)
T ss_dssp HHHSCCSEEEECCCCC
T ss_pred HHhCCCCEEEECCCCC
Confidence 13689999876543
No 469
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=67.02 E-value=26 Score=30.76 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----C----
Q 020988 166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 233 (319)
Q Consensus 166 ~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 233 (319)
.+++||=.|++.|. ++..+++.|. +|++++.++..++.+.+.+...+ ...++.++.+|+.+.. +
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEG--SGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46789999988763 5566677777 99999999988887777665431 1127888999997742 0
Q ss_pred -CCCCccEEEeccccc
Q 020988 234 -ASGFVDAVHAGAALH 248 (319)
Q Consensus 234 -~~~~fD~V~~~~vl~ 248 (319)
.-+..|+|+.+..+.
T Consensus 83 ~~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVN 98 (319)
T ss_dssp HHTCCEEEEEECCCCC
T ss_pred HhCCCCCEEEECCCcC
Confidence 014789999877654
No 470
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=66.99 E-value=3.5 Score=27.02 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=21.8
Q ss_pred CeeeccCCCcccc------ccCCCCCcccceecCceeeCccCCcccc
Q 020988 59 DLFSCPICYEPLI------RKGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 59 ~~l~CP~C~~~l~------~~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
..+.|+.|+..+. .+... ......+.|+.|+..|..
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~-----H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERI-----HCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGG-----GCCSCSEECSSSSCEESS
T ss_pred CCeECCCCCcccCCHHHHHHHHHH-----cCCCCCEeCCCCCCccCC
Confidence 4589999997432 11100 001145899999998843
No 471
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=66.86 E-value=7.3 Score=35.22 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=59.0
Q ss_pred hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcC-C-CCCC-----C
Q 020988 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-V-CRLP-----F 233 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d-~-~~lp-----~ 233 (319)
....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.- . . .++..+ . .++. .
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-------a-~-~vi~~~~~~~~~~~~v~~~ 261 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG-------A-T-DCLNPRELDKPVQDVITEL 261 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT-------C-S-EEECGGGCSSCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC-------C-c-EEEccccccchHHHHHHHH
Confidence 3456789999999874 778888887743337999999999888886521 1 1 122111 0 1110 1
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCC-CeeE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL-SICY 271 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g-~~~g 271 (319)
..+.+|+|+-. ... ...+++..++++++ |...
T Consensus 262 ~~~g~Dvvid~-----~G~-~~~~~~~~~~l~~~~G~iv 294 (376)
T 1e3i_A 262 TAGGVDYSLDC-----AGT-AQTLKAAVDCTVLGWGSCT 294 (376)
T ss_dssp HTSCBSEEEES-----SCC-HHHHHHHHHTBCTTTCEEE
T ss_pred hCCCccEEEEC-----CCC-HHHHHHHHHHhhcCCCEEE
Confidence 12379998653 322 24567788888887 6543
No 472
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=66.85 E-value=22 Score=30.47 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=54.2
Q ss_pred cCCCeEEEEcCCcCh---HHHHHHhhCCCCeEEEEeC-CHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-------
Q 020988 165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF------- 233 (319)
Q Consensus 165 ~~~~~VLDiGcG~G~---~~~~l~~~g~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~------- 233 (319)
..++++|=.|++.|. ++..+++.|. +|+.+|. +++.++...+.+... ...++.++.+|+.+...
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~ 97 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGL---SSGTVLHHPADMTKPSEIADMMAM 97 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTT---CSSCEEEECCCTTCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhc---cCCcEEEEeCCCCCHHHHHHHHHH
Confidence 346789999987652 5566677777 9999998 666666666555432 13578888999876420
Q ss_pred ---CCCCccEEEecccccC
Q 020988 234 ---ASGFVDAVHAGAALHC 249 (319)
Q Consensus 234 ---~~~~fD~V~~~~vl~h 249 (319)
.-+..|+++.+..+..
T Consensus 98 ~~~~~g~iD~lv~nAg~~~ 116 (281)
T 3v2h_A 98 VADRFGGADILVNNAGVQF 116 (281)
T ss_dssp HHHHTSSCSEEEECCCCCC
T ss_pred HHHHCCCCCEEEECCCCCC
Confidence 1147899998766543
No 473
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=66.51 E-value=5.3 Score=27.18 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=21.4
Q ss_pred cCeeeccCCCccccc-------cCCCCCcccceecCceeeCccCCc
Q 020988 58 GDLFSCPICYEPLIR-------KGPTGLTLGAIYRSGFKCRKCDKT 96 (319)
Q Consensus 58 ~~~l~CP~C~~~l~~-------~~~~~~~~~~i~~~~~~C~~Cg~~ 96 (319)
...++|++|+--... ..+++...+.+. ..+.|+.||..
T Consensus 5 m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lP-ddw~CP~Cga~ 49 (70)
T 1dx8_A 5 EGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLS-DSFMCPACRSP 49 (70)
T ss_dssp SSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSC-TTCBCTTTCCB
T ss_pred CceEEeCCCCEEEcCCCCCcccCcCCCCchhhCC-CCCcCCCCCCC
Confidence 346899999963221 111222223332 45789999983
No 474
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=66.44 E-value=19 Score=30.66 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=51.5
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC---------
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------- 232 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------- 232 (319)
..++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+ ..++.++.+|+.+..
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~~ 98 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAAEKGKALADEL-------GNRAEFVSTNVTSEDSVLAAIEAA 98 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHh-------CCceEEEEcCCCCHHHHHHHHHHH
Confidence 35678898888766 35566677776 9999999998877766655 247889999987742
Q ss_pred CCCCCccEEEec
Q 020988 233 FASGFVDAVHAG 244 (319)
Q Consensus 233 ~~~~~fD~V~~~ 244 (319)
-..+..|+++.+
T Consensus 99 ~~~~~id~lv~~ 110 (281)
T 3ppi_A 99 NQLGRLRYAVVA 110 (281)
T ss_dssp TTSSEEEEEEEC
T ss_pred HHhCCCCeEEEc
Confidence 112468888876
No 475
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=66.34 E-value=5.6 Score=34.91 Aligned_cols=56 Identities=11% Similarity=-0.056 Sum_probs=36.9
Q ss_pred CCeEEEEcCCCC-CC-CCCCCccEEEecccccCCCC--------------------HHHHHHHHHHhhcCCCeeEEEE
Q 020988 219 SNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPS--------------------PSNAASVFSSSYSLLSICYLLQ 274 (319)
Q Consensus 219 ~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d--------------------~~~~l~el~rvlk~g~~~g~~~ 274 (319)
.++.++++|..+ ++ +++++||+|++.--.....+ ....++++.++||++|...+.+
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 467889999876 32 45789999999754322111 1245678888988887766554
No 476
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.30 E-value=4.5 Score=27.02 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=11.3
Q ss_pred cccCeeeccCCCccc
Q 020988 56 LEGDLFSCPICYEPL 70 (319)
Q Consensus 56 ~~~~~l~CP~C~~~l 70 (319)
...+.+.||+|...+
T Consensus 11 ~~~~~~~C~IC~~~~ 25 (71)
T 2d8t_A 11 PSLTVPECAICLQTC 25 (71)
T ss_dssp SSSSCCBCSSSSSBC
T ss_pred cCCCCCCCccCCccc
Confidence 345678899999865
No 477
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=66.14 E-value=3.7 Score=25.47 Aligned_cols=32 Identities=16% Similarity=0.541 Sum_probs=19.6
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.++.|-.||..+...+-.. ....+|+-||..-
T Consensus 2 ~iY~C~rCg~~fs~~el~~-------lP~IrCpyCGyri 33 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKV-------LPGVRCPYCGYKI 33 (48)
T ss_dssp ---CCCCTTTTCCCCCSCC-------CSSSCCTTTCCSC
T ss_pred cEEEeeccCCCccHHHHhh-------CCCcccCccCcEE
Confidence 3578999998776543211 1456899999754
No 478
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=66.14 E-value=9.3 Score=34.53 Aligned_cols=45 Identities=24% Similarity=0.199 Sum_probs=36.4
Q ss_pred hccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 020988 163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208 (319)
Q Consensus 163 ~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~ 208 (319)
...++.+||-+|+|. |.++.++++.. ..+|+++|.+++.++.+++
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA 236 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 556889999999985 77777777763 3489999999998888876
No 479
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=66.03 E-value=14 Score=32.81 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=35.5
Q ss_pred hhccCCCeEEEEcCCcC-hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 020988 162 FKSAQGGLLVDVSCGSG-LFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~G-~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~ 209 (319)
....++.+||=+|+|.+ .++..+++.....+|+++|.+++-++.+++.
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~ 207 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI 207 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc
Confidence 34578899999999863 4555555543346999999999888777763
No 480
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=65.88 E-value=40 Score=29.64 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=54.8
Q ss_pred CCeEEEEcCCc--ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 020988 167 GGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG 244 (319)
Q Consensus 167 ~~~VLDiGcG~--G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~ 244 (319)
..+|.=||+|. +.++..+.+.|...+|+++|.+++.++.+.+. .-+.-...|..++ .-...|+|+..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~---------G~~~~~~~~~~~~--~~~~aDvVila 101 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---------GIIDEGTTSIAKV--EDFSPDFVMLS 101 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---------TSCSEEESCTTGG--GGGCCSEEEEC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC---------CCcchhcCCHHHH--hhccCCEEEEe
Confidence 36899999985 34566677766545899999999887776542 1111122343330 11357999875
Q ss_pred ccccCCCCHHHHHHHHHHhhcCCCe
Q 020988 245 AALHCWPSPSNAASVFSSSYSLLSI 269 (319)
Q Consensus 245 ~vl~h~~d~~~~l~el~rvlk~g~~ 269 (319)
--.. .....++++...++++..
T Consensus 102 vp~~---~~~~vl~~l~~~l~~~~i 123 (314)
T 3ggo_A 102 SPVR---TFREIAKKLSYILSEDAT 123 (314)
T ss_dssp SCGG---GHHHHHHHHHHHSCTTCE
T ss_pred CCHH---HHHHHHHHHhhccCCCcE
Confidence 3322 234566777777777653
No 481
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=65.74 E-value=28 Score=29.04 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCC-----C---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+.++.+++.++...+.+... ..++.++.+|+.+... .
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~ 79 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAA----GAKVHVLELDVADRQGVDAAVASTV 79 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3578888887765 24556666676 9999999988777766665442 3468889999876421 0
Q ss_pred --CCCccEEEecccc
Q 020988 235 --SGFVDAVHAGAAL 247 (319)
Q Consensus 235 --~~~fD~V~~~~vl 247 (319)
-+..|+++.+..+
T Consensus 80 ~~~g~id~lv~nAg~ 94 (247)
T 2jah_A 80 EALGGLDILVNNAGI 94 (247)
T ss_dssp HHHSCCSEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 1368999987654
No 482
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=65.23 E-value=3.3 Score=32.28 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=23.2
Q ss_pred cccCeeeccCCCccccccC-----------CCCCcccceecCceeeCccCCcc
Q 020988 56 LEGDLFSCPICYEPLIRKG-----------PTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 56 ~~~~~l~CP~C~~~l~~~~-----------~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
.....+.|+.||....... +..+.+ .+......||.||+.-
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p-~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIP-EVVHAFLACPKCGSHD 117 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCG-GGCGGGCSCSSSSCCC
T ss_pred ecCCcEECCCCCCEEecccccccccccccccccccc-cccccCCcCccccCCc
Confidence 3456899999998544322 000000 0111267899999864
No 483
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=65.18 E-value=6.7 Score=35.36 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=58.8
Q ss_pred hhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEc-CC-CCC-----CC
Q 020988 162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV-CRL-----PF 233 (319)
Q Consensus 162 l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~-d~-~~l-----p~ 233 (319)
....++.+||-+|+|. |.++.++++.....+|+++|.+++.++.+++.- . . .++.. +. .++ ..
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lG-------a-~-~vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFG-------A-T-ECINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHT-------C-S-EEECGGGCSSCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcC-------C-c-eEeccccccccHHHHHHHH
Confidence 3456789999999875 777777777632237999999999888887531 1 1 12211 10 111 01
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCC-CeeE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLL-SICY 271 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g-~~~g 271 (319)
..+.+|+|+-. ... ...+++..++++++ |...
T Consensus 257 ~~~g~D~vid~-----~g~-~~~~~~~~~~l~~~~G~iv 289 (373)
T 2fzw_A 257 TDGGVDYSFEC-----IGN-VKVMRAALEACHKGWGVSV 289 (373)
T ss_dssp TTSCBSEEEEC-----SCC-HHHHHHHHHTBCTTTCEEE
T ss_pred hCCCCCEEEEC-----CCc-HHHHHHHHHhhccCCcEEE
Confidence 12479998754 322 23467778888887 6543
No 484
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=64.91 E-value=12 Score=30.73 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=41.6
Q ss_pred eEEEEcCCc-Ch-HHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC----CCCCCccEEE
Q 020988 169 LLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVH 242 (319)
Q Consensus 169 ~VLDiGcG~-G~-~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~ 242 (319)
+|+=+|+|. |. ++..+.+.+. .|+++|.+++.++...+. .++.++.+|..+.. ..-...|+|+
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~l~~~---------~~~~~i~gd~~~~~~l~~a~i~~ad~vi 70 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY--GVVIINKDRELCEEFAKK---------LKATIIHGDGSHKEILRDAEVSKNDVVV 70 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHH---------SSSEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHH---------cCCeEEEcCCCCHHHHHhcCcccCCEEE
Confidence 567777653 22 3334444455 899999999887765543 25678899887632 1124678888
Q ss_pred ec
Q 020988 243 AG 244 (319)
Q Consensus 243 ~~ 244 (319)
+.
T Consensus 71 ~~ 72 (218)
T 3l4b_C 71 IL 72 (218)
T ss_dssp EC
T ss_pred Ee
Confidence 74
No 485
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=64.87 E-value=8.7 Score=34.57 Aligned_cols=94 Identities=13% Similarity=-0.021 Sum_probs=58.2
Q ss_pred HhhccCCCeEEEEcCCc-ChHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC------C
Q 020988 161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F 233 (319)
Q Consensus 161 ~l~~~~~~~VLDiGcG~-G~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~ 233 (319)
.....++.+||-+|+|. |.++.++++.. ..+|+++|.+++-++.+++.- . . .++..+..++. .
T Consensus 184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG-------a-~-~vi~~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 184 KGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALG-------A-D-HGINRLEEDWVERVYALT 253 (363)
T ss_dssp TTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHT-------C-S-EEEETTTSCHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcC-------C-C-EEEcCCcccHHHHHHHHh
Confidence 34456889999999875 77777777763 349999999999888877641 1 1 12222211111 1
Q ss_pred CCCCccEEEecccccCCCCHHHHHHHHHHhhcCCCeeE
Q 020988 234 ASGFVDAVHAGAALHCWPSPSNAASVFSSSYSLLSICY 271 (319)
Q Consensus 234 ~~~~fD~V~~~~vl~h~~d~~~~l~el~rvlk~g~~~g 271 (319)
....+|+|+-.-.- ..++...++++++|...
T Consensus 254 ~g~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv 284 (363)
T 3uog_A 254 GDRGADHILEIAGG-------AGLGQSLKAVAPDGRIS 284 (363)
T ss_dssp TTCCEEEEEEETTS-------SCHHHHHHHEEEEEEEE
T ss_pred CCCCceEEEECCCh-------HHHHHHHHHhhcCCEEE
Confidence 23479999865431 12555667777665433
No 486
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=64.86 E-value=17 Score=31.13 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=56.9
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC--
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-- 234 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-- 234 (319)
..++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~v~~~~~~~ 103 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGV----GGKALPIRCDVTQPDQVRGMLDQM 103 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45788999988766 35566677777 9999999988877777766553 357888999997743 10
Q ss_pred ---CCCccEEEecccccC
Q 020988 235 ---SGFVDAVHAGAALHC 249 (319)
Q Consensus 235 ---~~~fD~V~~~~vl~h 249 (319)
-+..|+++.+..+..
T Consensus 104 ~~~~g~iD~lvnnAg~~~ 121 (276)
T 3r1i_A 104 TGELGGIDIAVCNAGIVS 121 (276)
T ss_dssp HHHHSCCSEEEECCCCCC
T ss_pred HHHcCCCCEEEECCCCCC
Confidence 137899998775543
No 487
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=64.80 E-value=1.8 Score=32.18 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.9
Q ss_pred eeccCCCcccc
Q 020988 61 FSCPICYEPLI 71 (319)
Q Consensus 61 l~CP~C~~~l~ 71 (319)
-.||+||+++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 36999999775
No 488
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=64.74 E-value=17 Score=31.29 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=51.7
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----C-CC
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS 235 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~ 235 (319)
..++++|=.|++.| .++..+++.|. +|+.+|.++...+.+.+.+ ..++.++.+|+.+.. + .-
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~d~~~v~~~~~~~ 84 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGEAAARTM-------AGQVEVRELDLQDLSSVRRFADGV 84 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHTTS-------SSEEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-------cCCeeEEEcCCCCHHHHHHHHHhc
Confidence 45678998887765 25556666676 9999999987766655433 347889999987643 1 11
Q ss_pred CCccEEEecccc
Q 020988 236 GFVDAVHAGAAL 247 (319)
Q Consensus 236 ~~fD~V~~~~vl 247 (319)
+..|+++.+..+
T Consensus 85 ~~iD~lv~nAg~ 96 (291)
T 3rd5_A 85 SGADVLINNAGI 96 (291)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCcC
Confidence 478999987654
No 489
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=64.49 E-value=0.66 Score=30.30 Aligned_cols=38 Identities=16% Similarity=0.374 Sum_probs=21.9
Q ss_pred CeeeccCCCccccc------cCCCCCcccceecCceeeCccCCcccc
Q 020988 59 DLFSCPICYEPLIR------KGPTGLTLGAIYRSGFKCRKCDKTYSS 99 (319)
Q Consensus 59 ~~l~CP~C~~~l~~------~~~~~~~~~~i~~~~~~C~~Cg~~f~~ 99 (319)
..+.|+.|+..+.. ..... . ......+.|+.|+..|..
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~~-H--~~~~~~~~C~~C~k~f~~ 52 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYVTS-H--KRNVKVYPCPFCFKEFTR 52 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHHHH-S--SSSCCCEECTTTCCEESC
T ss_pred cceECCCCcchhCCHHHHHHHHHHH-c--CCCCcCeECCCCCCccCC
Confidence 45899999974321 10000 0 001256899999998843
No 490
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=64.36 E-value=20 Score=30.46 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=55.6
Q ss_pred cCCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCCCC-------
Q 020988 165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA------- 234 (319)
Q Consensus 165 ~~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~------- 234 (319)
..++++|=.|++.| ..+..+++.|. +|+.+|.+++.++.+.+.+... ...++.++.+|+.+...-
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQ---FGTDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH---HCCCEEEEECCTTSTTHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 34678888888765 25566667776 8999999998887776665441 135788999999875410
Q ss_pred ---CCCccEEEeccccc
Q 020988 235 ---SGFVDAVHAGAALH 248 (319)
Q Consensus 235 ---~~~fD~V~~~~vl~ 248 (319)
-+..|+++.+..+.
T Consensus 93 ~~~~g~id~lv~nAg~~ 109 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGIS 109 (266)
T ss_dssp HHHHTSCSEEEEECCCC
T ss_pred HHHcCCCCEEEECCCcC
Confidence 13789999876544
No 491
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=64.28 E-value=6 Score=26.09 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=12.0
Q ss_pred cccCeeeccCCCccccc
Q 020988 56 LEGDLFSCPICYEPLIR 72 (319)
Q Consensus 56 ~~~~~l~CP~C~~~l~~ 72 (319)
.......||+|...+..
T Consensus 10 ~~~~~~~C~IC~~~~~~ 26 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEE 26 (69)
T ss_dssp STTCCCSBTTTTBCCCS
T ss_pred cCCCCCCCeeCCccccC
Confidence 34456789999987643
No 492
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=64.11 E-value=2.3 Score=37.93 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=20.5
Q ss_pred cCeeeccCCCccc----cccCCCCCcccceecCceeeCccCCccc
Q 020988 58 GDLFSCPICYEPL----IRKGPTGLTLGAIYRSGFKCRKCDKTYS 98 (319)
Q Consensus 58 ~~~l~CP~C~~~l----~~~~~~~~~~~~i~~~~~~C~~Cg~~f~ 98 (319)
..--.||+||+.- ...+. . .+ -..++.|.-|++.+.
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g--~-~~--G~R~l~Cs~C~t~W~ 219 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGG--K-ET--GLRYLSCSLCACEWH 219 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC-------C--CEEEEEETTTCCEEE
T ss_pred ccCCCCCCCCCcCceeEEeecC--C-CC--CcEEEEeCCCCCEEe
Confidence 4566899999932 12100 0 00 114788888888873
No 493
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=64.07 E-value=4.7 Score=25.17 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=18.1
Q ss_pred CeeeccCCCccccccCCCCCcccceecCceeeCccCCcc
Q 020988 59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY 97 (319)
Q Consensus 59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~~~C~~Cg~~f 97 (319)
+...||+|...+...+ .......|||.|
T Consensus 4 ~~~~C~IC~~~~~~~~-----------~~~~~~~CgH~f 31 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSR-----------VVAHVLPCGHLL 31 (55)
T ss_dssp CCCSCTTTCCCCCTTT-----------SCEEECTTSCEE
T ss_pred CCCcCcccChhhcCCC-----------cCeEecCCCCcc
Confidence 3467999998774322 223455688877
No 494
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=64.03 E-value=30 Score=29.50 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+++|.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~ 94 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREA----GVEADGRTCDVRSVPEIEALVAAVV 94 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHHH
Confidence 4578898887755 24555666676 9999999988777666655442 346888899987642 10
Q ss_pred --CCCccEEEeccccc
Q 020988 235 --SGFVDAVHAGAALH 248 (319)
Q Consensus 235 --~~~fD~V~~~~vl~ 248 (319)
-+..|+|+.+..+.
T Consensus 95 ~~~g~iD~lv~~Ag~~ 110 (277)
T 2rhc_B 95 ERYGPVDVLVNNAGRP 110 (277)
T ss_dssp HHTCSCSEEEECCCCC
T ss_pred HHhCCCCEEEECCCCC
Confidence 13689999876543
No 495
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.00 E-value=6.6 Score=25.36 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=11.3
Q ss_pred ccCeeeccCCCcccc
Q 020988 57 EGDLFSCPICYEPLI 71 (319)
Q Consensus 57 ~~~~l~CP~C~~~l~ 71 (319)
..+.+.||+|...+.
T Consensus 17 ~~~~~~C~IC~~~~~ 31 (63)
T 2ysj_A 17 LQEEVICPICLDILQ 31 (63)
T ss_dssp CCCCCBCTTTCSBCS
T ss_pred CccCCCCCcCCchhC
Confidence 345688999998654
No 496
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=63.88 E-value=30 Score=29.51 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCC----------------HHHHHHHHHHHhhcCccCCCCeEEEEc
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS----------------ENMLRQCYDFIKQDNTILTSNLALVRA 226 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s----------------~~~l~~a~~~~~~~~~~~~~~i~~~~~ 226 (319)
.++++|=.|++.| .++..+++.|. +|+.+|.+ .+.++...+.+... ..++.++.+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 83 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH----NRRIVTAEV 83 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT----TCCEEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc----CCceEEEEc
Confidence 5678999998876 35666777777 99999987 66666665555442 457889999
Q ss_pred CCCCCC-----CC-----CCCccEEEeccccc
Q 020988 227 DVCRLP-----FA-----SGFVDAVHAGAALH 248 (319)
Q Consensus 227 d~~~lp-----~~-----~~~fD~V~~~~vl~ 248 (319)
|+.+.. +. -+..|+++.+..+.
T Consensus 84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 115 (286)
T 3uve_A 84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIG 115 (286)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 997742 00 13789999876543
No 497
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=63.76 E-value=30 Score=29.10 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+... ..++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREK----GVEARSYVCDVTSEEAVIGTVDSVV 79 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT----TSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4678898888765 24556666676 8999999988777666665442 346888899987642 00
Q ss_pred --CCCccEEEecccc
Q 020988 235 --SGFVDAVHAGAAL 247 (319)
Q Consensus 235 --~~~fD~V~~~~vl 247 (319)
-+..|+++.+..+
T Consensus 80 ~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 80 RDFGKIDFLFNNAGY 94 (262)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCCCEEEECCCC
Confidence 1368999987654
No 498
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=63.65 E-value=16 Score=33.40 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=53.4
Q ss_pred CCeEEEEcCCcChHH----HHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CCCCC
Q 020988 167 GGLLVDVSCGSGLFS----RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF 237 (319)
Q Consensus 167 ~~~VLDiGcG~G~~~----~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~ 237 (319)
+++||=.|++ |..+ ..+++.|+ .+|+++|.++..+....+.+.........++.++.+|+.+.. +....
T Consensus 35 ~k~vLVTGat-G~IG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 112 (399)
T 3nzo_A 35 QSRFLVLGGA-GSIGQAVTKEIFKRNP-QKLHVVDISENNMVELVRDIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQ 112 (399)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHTTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEECCCTTSHHHHHHHHHCCC
T ss_pred CCEEEEEcCC-hHHHHHHHHHHHHCCC-CEEEEEECCcchHHHHHHHHHHhcCCCCCcEEEEEEeCCCHHHHHHHHHhCC
Confidence 5789988754 4444 44444552 489999999987766665554321111257889999987742 22357
Q ss_pred ccEEEecccccCC
Q 020988 238 VDAVHAGAALHCW 250 (319)
Q Consensus 238 fD~V~~~~vl~h~ 250 (319)
+|+|+......|.
T Consensus 113 ~D~Vih~Aa~~~~ 125 (399)
T 3nzo_A 113 YDYVLNLSALKHV 125 (399)
T ss_dssp CSEEEECCCCCCG
T ss_pred CCEEEECCCcCCC
Confidence 8999987766554
No 499
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=63.61 E-value=22 Score=30.05 Aligned_cols=86 Identities=16% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----CC---
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--- 234 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--- 234 (319)
.++++|=.|++.| .++..+++.|. +|+++|.++...+...+.+.... ...++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKVV 81 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhc--CCCceEEEecCCCCHHHHHHHHHHHH
Confidence 3568888887655 25556666676 99999999877666555543210 0236788899987642 10
Q ss_pred --CCCccEEEecccccCCCCHHH
Q 020988 235 --SGFVDAVHAGAALHCWPSPSN 255 (319)
Q Consensus 235 --~~~fD~V~~~~vl~h~~d~~~ 255 (319)
-+..|+++.+.......+...
T Consensus 82 ~~~g~id~lv~~Ag~~~~~~~~~ 104 (267)
T 2gdz_A 82 DHFGRLDILVNNAGVNNEKNWEK 104 (267)
T ss_dssp HHHSCCCEEEECCCCCCSSSHHH
T ss_pred HHcCCCCEEEECCCCCChhhHHH
Confidence 135799998776554444443
No 500
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=63.56 E-value=30 Score=29.09 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCcC---hHHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHhhcCccCCCCeEEEEcCCCCCC-----C----
Q 020988 166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F---- 233 (319)
Q Consensus 166 ~~~~VLDiGcG~G---~~~~~l~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~---- 233 (319)
.++++|=.|++.| .++..+++.|. +|+.+|.+++.++...+.+ ..++.++.+|+.+.. +
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEI-------GPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCCceEEEeeCCCHHHHHHHHHHHH
Confidence 4678998887765 35566677777 9999999988777666554 246788999997642 0
Q ss_pred -CCCCccEEEeccccc
Q 020988 234 -ASGFVDAVHAGAALH 248 (319)
Q Consensus 234 -~~~~fD~V~~~~vl~ 248 (319)
.-+..|+++.+..+.
T Consensus 78 ~~~g~id~lv~~Ag~~ 93 (259)
T 4e6p_A 78 EHAGGLDILVNNAALF 93 (259)
T ss_dssp HHSSSCCEEEECCCCC
T ss_pred HHcCCCCEEEECCCcC
Confidence 013789999876553
Done!