Query 020989
Match_columns 319
No_of_seqs 189 out of 1382
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 3.6E-84 7.8E-89 637.9 27.0 285 24-308 32-367 (524)
2 PLN02998 beta-glucosidase 100.0 1.1E-79 2.4E-84 616.7 26.4 283 11-293 13-342 (497)
3 PLN02849 beta-glucosidase 100.0 2.3E-79 5E-84 615.2 26.0 274 18-292 19-337 (503)
4 PLN02814 beta-glucosidase 100.0 4.6E-78 1E-82 605.9 25.6 269 23-293 22-336 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 1.9E-75 4.1E-80 571.9 22.9 256 27-293 2-309 (460)
6 PRK09593 arb 6-phospho-beta-gl 100.0 4.5E-75 9.8E-80 581.9 24.8 257 26-293 3-323 (478)
7 PF00232 Glyco_hydro_1: Glycos 100.0 6.2E-76 1.3E-80 586.2 18.1 258 26-295 2-308 (455)
8 TIGR01233 lacG 6-phospho-beta- 100.0 7.9E-75 1.7E-79 578.9 24.4 253 27-292 2-306 (467)
9 PRK13511 6-phospho-beta-galact 100.0 8.3E-75 1.8E-79 579.5 24.1 253 27-292 3-307 (469)
10 PRK09589 celA 6-phospho-beta-g 100.0 2.5E-74 5.5E-79 576.2 24.8 253 28-291 3-320 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 9.6E-74 2.1E-78 571.9 26.1 257 25-292 2-323 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1.1E-72 2.4E-77 563.6 24.8 254 28-292 3-319 (474)
13 TIGR03356 BGL beta-galactosida 100.0 2.1E-71 4.6E-76 549.3 24.1 251 29-292 1-296 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.5 6.6E-14 1.4E-18 136.7 8.8 109 79-191 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.4 1.9E-12 4.1E-17 119.5 9.4 110 80-192 22-135 (281)
16 smart00633 Glyco_10 Glycosyl h 98.9 6E-09 1.3E-13 96.8 8.5 83 101-191 2-86 (254)
17 COG1874 LacA Beta-galactosidas 98.8 8.1E-09 1.8E-13 107.2 7.8 119 79-201 30-175 (673)
18 COG2730 BglC Endoglucanase [Ca 98.4 1.3E-06 2.8E-11 86.7 9.3 109 82-190 76-193 (407)
19 PF01229 Glyco_hydro_39: Glyco 98.3 2.1E-06 4.5E-11 87.1 9.3 108 80-192 40-169 (486)
20 PF00331 Glyco_hydro_10: Glyco 98.1 8.1E-06 1.8E-10 78.6 8.8 123 29-191 6-137 (320)
21 PF07745 Glyco_hydro_53: Glyco 98.1 2.7E-05 5.9E-10 75.3 12.2 131 82-240 27-166 (332)
22 PF01301 Glyco_hydro_35: Glyco 98.0 2.2E-05 4.8E-10 75.6 8.7 110 79-189 24-151 (319)
23 PF01373 Glyco_hydro_14: Glyco 97.6 0.00015 3.3E-09 71.4 7.0 106 78-189 15-151 (402)
24 PLN00197 beta-amylase; Provisi 97.5 0.00037 8.1E-09 70.7 8.7 109 77-190 125-272 (573)
25 PLN02803 beta-amylase 97.5 0.00035 7.6E-09 70.6 8.5 109 77-190 105-252 (548)
26 PLN02161 beta-amylase 97.5 0.00039 8.5E-09 70.0 8.4 111 75-190 113-262 (531)
27 PLN03059 beta-galactosidase; P 97.4 0.00086 1.9E-08 71.6 10.6 110 79-190 59-189 (840)
28 PLN02801 beta-amylase 97.4 0.00089 1.9E-08 67.4 9.7 101 76-179 34-173 (517)
29 COG3867 Arabinogalactan endo-1 97.3 0.019 4.1E-07 54.7 17.2 162 27-240 33-212 (403)
30 PLN02905 beta-amylase 97.3 0.0013 2.9E-08 67.6 9.8 101 75-178 282-421 (702)
31 PLN02705 beta-amylase 97.2 0.0015 3.3E-08 66.9 9.5 99 77-178 266-403 (681)
32 COG3693 XynA Beta-1,4-xylanase 97.2 0.00076 1.6E-08 64.5 6.9 86 99-190 66-153 (345)
33 PF13204 DUF4038: Protein of u 97.2 0.003 6.5E-08 60.0 10.6 102 82-188 33-156 (289)
34 PF02836 Glyco_hydro_2_C: Glyc 96.8 0.0079 1.7E-07 56.9 9.3 94 77-189 34-133 (298)
35 PF14488 DUF4434: Domain of un 96.6 0.012 2.6E-07 51.5 8.7 104 79-191 20-133 (166)
36 PF14587 Glyco_hydr_30_2: O-Gl 96.4 0.0081 1.8E-07 59.1 6.9 98 90-190 58-185 (384)
37 KOG0496 Beta-galactosidase [Ca 96.3 0.022 4.7E-07 59.2 9.7 110 78-189 48-176 (649)
38 PRK10150 beta-D-glucuronidase; 95.9 0.035 7.5E-07 57.9 8.9 94 79-189 313-419 (604)
39 PRK09525 lacZ beta-D-galactosi 94.0 0.22 4.9E-06 55.2 8.9 91 77-189 369-464 (1027)
40 PF12876 Cellulase-like: Sugar 93.2 0.12 2.7E-06 40.1 4.0 82 171-284 1-88 (88)
41 COG3250 LacZ Beta-galactosidas 93.0 0.66 1.4E-05 50.2 10.4 88 78-190 320-409 (808)
42 PRK10340 ebgA cryptic beta-D-g 92.9 0.44 9.6E-06 52.9 9.1 90 78-189 354-451 (1021)
43 COG3934 Endo-beta-mannanase [C 92.5 0.057 1.2E-06 54.4 1.4 109 81-190 28-150 (587)
44 COG3664 XynB Beta-xylosidase [ 92.2 0.31 6.6E-06 48.4 5.9 100 88-192 14-118 (428)
45 PF07488 Glyco_hydro_67M: Glyc 91.5 1.9 4E-05 41.5 10.2 87 78-177 56-150 (328)
46 smart00642 Aamy Alpha-amylase 88.6 1.3 2.8E-05 38.6 6.3 65 76-140 16-91 (166)
47 COG3534 AbfA Alpha-L-arabinofu 87.0 2.8 6E-05 42.3 8.1 96 81-189 50-175 (501)
48 PF03198 Glyco_hydro_72: Gluca 86.6 2.9 6.3E-05 40.3 7.8 90 79-187 53-144 (314)
49 PF12891 Glyco_hydro_44: Glyco 84.2 5.9 0.00013 36.8 8.4 105 118-240 23-169 (239)
50 PF00128 Alpha-amylase: Alpha 81.9 2.3 5.1E-05 39.0 4.9 59 81-140 6-73 (316)
51 PLN02361 alpha-amylase 80.3 3.9 8.5E-05 40.8 6.1 64 76-139 26-96 (401)
52 PLN00196 alpha-amylase; Provis 79.5 3.7 8E-05 41.3 5.7 63 77-139 42-112 (428)
53 PF02638 DUF187: Glycosyl hydr 79.0 9.1 0.0002 36.8 8.0 99 78-176 18-154 (311)
54 cd07939 DRE_TIM_NifV Streptomy 77.9 7.7 0.00017 36.0 6.9 60 81-140 71-131 (259)
55 PF14871 GHL6: Hypothetical gl 77.0 10 0.00022 31.9 6.8 57 83-140 4-65 (132)
56 cd07948 DRE_TIM_HCS Saccharomy 75.2 11 0.00024 35.3 7.3 64 81-145 73-139 (262)
57 cd03174 DRE_TIM_metallolyase D 74.8 10 0.00022 34.6 6.9 60 82-141 77-137 (265)
58 PRK12313 glycogen branching en 74.5 13 0.00028 39.2 8.4 94 77-176 168-302 (633)
59 cd07945 DRE_TIM_CMS Leptospira 74.0 26 0.00056 33.2 9.5 66 80-145 75-141 (280)
60 TIGR00612 ispG_gcpE 1-hydroxy- 73.7 28 0.00062 34.0 9.6 84 74-171 77-160 (346)
61 PF05089 NAGLU: Alpha-N-acetyl 73.3 9.9 0.00022 37.0 6.5 110 78-189 18-185 (333)
62 PRK05402 glycogen branching en 73.2 17 0.00037 39.1 8.9 94 77-176 263-397 (726)
63 PRK05692 hydroxymethylglutaryl 72.4 15 0.00032 34.9 7.4 61 80-140 80-141 (287)
64 PF10566 Glyco_hydro_97: Glyco 72.4 12 0.00025 35.6 6.6 87 55-142 9-96 (273)
65 TIGR02090 LEU1_arch isopropylm 72.2 12 0.00026 36.7 7.0 107 80-190 72-197 (363)
66 cd07937 DRE_TIM_PC_TC_5S Pyruv 72.2 22 0.00048 33.4 8.5 47 81-140 93-139 (275)
67 TIGR02403 trehalose_treC alpha 71.0 7.7 0.00017 40.1 5.6 65 74-140 22-96 (543)
68 cd07944 DRE_TIM_HOA_like 4-hyd 70.5 17 0.00038 34.0 7.4 47 82-141 85-131 (266)
69 PRK10933 trehalose-6-phosphate 70.5 8.1 0.00018 40.1 5.6 65 74-140 28-102 (551)
70 PRK14041 oxaloacetate decarbox 70.2 16 0.00036 37.2 7.6 97 77-190 88-209 (467)
71 PRK05799 coproporphyrinogen II 70.2 11 0.00025 36.7 6.3 95 81-192 98-196 (374)
72 PRK09058 coproporphyrinogen II 69.3 19 0.00041 36.3 7.8 106 81-202 162-270 (449)
73 KOG2233 Alpha-N-acetylglucosam 69.1 12 0.00027 38.3 6.2 111 78-188 77-248 (666)
74 PLN02746 hydroxymethylglutaryl 68.9 16 0.00035 35.8 7.0 60 81-140 123-183 (347)
75 PRK12858 tagatose 1,6-diphosph 68.4 21 0.00045 34.9 7.6 53 85-140 112-164 (340)
76 TIGR02660 nifV_homocitr homoci 68.2 16 0.00035 35.8 6.9 106 81-190 74-198 (365)
77 TIGR01210 conserved hypothetic 67.4 29 0.00063 33.3 8.3 108 82-203 117-229 (313)
78 PRK09441 cytoplasmic alpha-amy 66.9 10 0.00023 38.4 5.5 64 76-139 19-101 (479)
79 PRK14040 oxaloacetate decarbox 66.5 21 0.00045 37.6 7.6 97 77-190 90-211 (593)
80 cd06592 GH31_glucosidase_KIAA1 66.4 31 0.00067 32.8 8.3 107 80-189 31-167 (303)
81 PLN02784 alpha-amylase 66.2 14 0.00029 40.5 6.3 64 76-139 518-588 (894)
82 TIGR01515 branching_enzym alph 65.9 34 0.00074 36.0 9.2 99 78-176 155-288 (613)
83 cd06543 GH18_PF-ChiA-like PF-C 65.7 39 0.00084 32.3 8.8 58 86-143 19-78 (294)
84 cd07943 DRE_TIM_HOA 4-hydroxy- 65.3 70 0.0015 29.6 10.3 92 82-189 88-197 (263)
85 PRK11858 aksA trans-homoaconit 65.0 22 0.00047 35.1 7.2 105 82-190 78-201 (378)
86 cd06593 GH31_xylosidase_YicI Y 64.5 47 0.001 31.5 9.1 106 80-188 25-160 (308)
87 cd06602 GH31_MGAM_SI_GAA This 64.3 44 0.00095 32.4 9.0 107 81-190 26-168 (339)
88 PRK03705 glycogen debranching 64.3 15 0.00032 39.2 6.1 54 85-139 185-262 (658)
89 cd07941 DRE_TIM_LeuA3 Desulfob 63.9 62 0.0013 30.3 9.7 105 82-189 81-207 (273)
90 TIGR00433 bioB biotin syntheta 63.3 20 0.00043 33.5 6.3 56 81-139 122-178 (296)
91 TIGR02456 treS_nterm trehalose 62.4 11 0.00024 38.8 4.8 64 76-139 25-96 (539)
92 cd06600 GH31_MGAM-like This fa 62.4 55 0.0012 31.3 9.3 107 82-191 27-164 (317)
93 PRK12331 oxaloacetate decarbox 61.1 35 0.00077 34.6 7.9 93 81-190 98-210 (448)
94 PRK12399 tagatose 1,6-diphosph 61.0 40 0.00087 32.8 7.9 58 85-145 111-168 (324)
95 TIGR03217 4OH_2_O_val_ald 4-hy 61.0 84 0.0018 30.5 10.3 94 81-190 89-201 (333)
96 PRK14705 glycogen branching en 60.9 45 0.00097 38.2 9.3 98 78-176 764-897 (1224)
97 cd06591 GH31_xylosidase_XylS X 60.9 62 0.0013 31.0 9.3 109 81-192 26-164 (319)
98 cd07938 DRE_TIM_HMGL 3-hydroxy 60.1 31 0.00068 32.4 7.0 65 81-145 75-141 (274)
99 cd06601 GH31_lyase_GLase GLase 59.8 41 0.00089 32.7 7.9 107 83-193 28-139 (332)
100 PRK04161 tagatose 1,6-diphosph 59.2 45 0.00099 32.5 7.9 59 84-145 112-170 (329)
101 PRK09505 malS alpha-amylase; R 59.1 25 0.00055 37.6 6.8 66 78-143 229-318 (683)
102 TIGR00539 hemN_rel putative ox 58.8 24 0.00051 34.3 6.1 94 81-190 99-195 (360)
103 PF03659 Glyco_hydro_71: Glyco 58.6 51 0.0011 32.8 8.4 52 79-140 17-68 (386)
104 cd07940 DRE_TIM_IPMS 2-isoprop 58.5 31 0.00067 32.1 6.6 58 82-140 72-135 (268)
105 PRK10785 maltodextrin glucosid 58.5 17 0.00038 38.0 5.4 60 79-140 179-247 (598)
106 COG1523 PulA Type II secretory 58.0 21 0.00046 38.2 5.9 62 78-139 197-285 (697)
107 TIGR03471 HpnJ hopanoid biosyn 58.0 31 0.00067 34.8 7.0 59 82-145 287-348 (472)
108 TIGR02402 trehalose_TreZ malto 57.8 17 0.00036 37.7 5.1 58 76-139 108-180 (542)
109 PRK14511 maltooligosyl trehalo 56.8 30 0.00065 38.1 6.9 56 78-139 19-89 (879)
110 PRK12581 oxaloacetate decarbox 56.8 39 0.00085 34.5 7.4 93 34-145 54-158 (468)
111 PRK08446 coproporphyrinogen II 56.5 51 0.0011 32.0 8.0 93 82-190 98-193 (350)
112 cd06603 GH31_GANC_GANAB_alpha 56.0 72 0.0016 30.8 8.9 110 81-192 26-167 (339)
113 cd06598 GH31_transferase_CtsZ 55.3 85 0.0018 30.0 9.2 108 81-191 26-168 (317)
114 PLN02447 1,4-alpha-glucan-bran 54.8 22 0.00047 38.5 5.4 100 77-176 248-383 (758)
115 PRK14507 putative bifunctional 54.6 39 0.00085 39.8 7.7 66 78-143 757-833 (1693)
116 PRK00366 ispG 4-hydroxy-3-meth 54.0 73 0.0016 31.4 8.4 71 90-171 99-169 (360)
117 PRK14510 putative bifunctional 53.9 21 0.00045 40.8 5.3 64 76-139 182-267 (1221)
118 PRK07379 coproporphyrinogen II 52.5 67 0.0014 31.9 8.2 105 81-201 114-221 (400)
119 PRK08195 4-hyroxy-2-oxovalerat 52.4 57 0.0012 31.7 7.5 93 82-190 91-202 (337)
120 PRK05628 coproporphyrinogen II 52.4 81 0.0017 30.8 8.7 97 81-193 107-206 (375)
121 TIGR01108 oadA oxaloacetate de 52.2 59 0.0013 34.2 8.0 93 81-190 93-205 (582)
122 TIGR02629 L_rham_iso_rhiz L-rh 51.9 65 0.0014 32.4 7.9 90 80-183 71-171 (412)
123 PRK08208 coproporphyrinogen II 51.5 56 0.0012 32.7 7.5 61 81-145 140-203 (430)
124 cd07947 DRE_TIM_Re_CS Clostrid 51.2 38 0.00083 32.0 6.0 60 80-139 75-135 (279)
125 COG3589 Uncharacterized conser 50.8 30 0.00066 33.8 5.2 54 85-149 22-75 (360)
126 TIGR03581 EF_0839 conserved hy 49.8 42 0.0009 30.9 5.6 75 78-164 134-230 (236)
127 PRK08599 coproporphyrinogen II 49.8 80 0.0017 30.8 8.2 96 81-193 99-198 (377)
128 COG0366 AmyA Glycosidases [Car 49.6 21 0.00045 35.6 4.1 58 82-139 32-97 (505)
129 cd06599 GH31_glycosidase_Aec37 48.9 1.4E+02 0.0029 28.6 9.5 109 81-190 31-171 (317)
130 cd07938 DRE_TIM_HMGL 3-hydroxy 48.7 1.8E+02 0.0039 27.3 10.1 93 79-190 114-206 (274)
131 cd06545 GH18_3CO4_chitinase Th 48.3 54 0.0012 30.1 6.4 73 99-176 27-99 (253)
132 TIGR02401 trehalose_TreY malto 48.3 30 0.00065 37.8 5.3 66 78-143 15-91 (825)
133 COG2100 Predicted Fe-S oxidore 47.8 52 0.0011 32.3 6.2 79 78-172 200-284 (414)
134 PRK09936 hypothetical protein; 47.6 2E+02 0.0043 27.7 10.1 100 79-189 38-145 (296)
135 PRK12568 glycogen branching en 47.1 29 0.00063 37.4 4.9 99 77-176 267-401 (730)
136 COG0821 gcpE 1-hydroxy-2-methy 46.6 1.7E+02 0.0036 28.8 9.4 71 89-171 92-162 (361)
137 PF00682 HMGL-like: HMGL-like 46.5 60 0.0013 29.2 6.3 102 86-190 74-194 (237)
138 cd06542 GH18_EndoS-like Endo-b 46.4 70 0.0015 29.2 6.9 55 118-176 50-104 (255)
139 PRK09249 coproporphyrinogen II 45.7 80 0.0017 31.8 7.6 77 81-173 150-229 (453)
140 cd06525 GH25_Lyc-like Lyc mura 45.2 1.7E+02 0.0037 25.4 8.9 23 159-181 100-122 (184)
141 smart00729 Elp3 Elongator prot 44.2 1.5E+02 0.0032 25.0 8.2 57 80-139 98-157 (216)
142 PF03511 Fanconi_A: Fanconi an 43.4 20 0.00043 26.4 2.1 37 103-141 19-55 (64)
143 TIGR01212 radical SAM protein, 43.3 56 0.0012 31.1 5.8 73 118-203 162-234 (302)
144 PLN02960 alpha-amylase 43.0 46 0.00099 36.7 5.6 96 75-176 412-549 (897)
145 PLN02389 biotin synthase 42.9 72 0.0016 31.6 6.7 58 80-140 176-234 (379)
146 TIGR01232 lacD tagatose 1,6-di 42.9 1.2E+02 0.0027 29.5 8.0 59 84-145 111-169 (325)
147 COG1501 Alpha-glucosidases, fa 42.8 87 0.0019 34.1 7.7 101 90-193 293-421 (772)
148 PRK06294 coproporphyrinogen II 42.6 1.1E+02 0.0025 29.8 8.0 94 82-192 103-200 (370)
149 PRK12677 xylose isomerase; Pro 42.3 1.7E+02 0.0037 29.0 9.2 91 80-177 32-128 (384)
150 cd06595 GH31_xylosidase_XylS-l 42.3 2.1E+02 0.0046 26.9 9.6 60 81-140 27-95 (292)
151 PRK11572 copper homeostasis pr 41.8 74 0.0016 29.8 6.2 42 78-128 72-113 (248)
152 PF02065 Melibiase: Melibiase; 41.7 1.3E+02 0.0027 30.1 8.2 97 80-176 59-183 (394)
153 PRK09856 fructoselysine 3-epim 41.5 36 0.00079 31.2 4.2 61 77-138 88-148 (275)
154 KOG1065 Maltase glucoamylase a 41.4 1.3E+02 0.0028 32.9 8.5 104 83-192 315-453 (805)
155 TIGR03234 OH-pyruv-isom hydrox 41.3 75 0.0016 28.8 6.2 65 78-145 83-150 (254)
156 TIGR02100 glgX_debranch glycog 41.0 64 0.0014 34.6 6.4 56 85-140 190-266 (688)
157 TIGR00542 hxl6Piso_put hexulos 40.8 46 0.001 30.7 4.8 60 78-139 93-153 (279)
158 PRK05692 hydroxymethylglutaryl 40.1 2.7E+02 0.0059 26.3 9.9 94 78-190 119-212 (287)
159 TIGR01211 ELP3 histone acetylt 39.5 1.1E+02 0.0023 31.8 7.5 107 81-204 205-317 (522)
160 PRK05904 coproporphyrinogen II 39.4 1.4E+02 0.0031 29.0 8.2 93 82-191 103-199 (353)
161 PF04914 DltD_C: DltD C-termin 39.3 89 0.0019 26.2 5.8 57 117-177 34-90 (130)
162 TIGR02631 xylA_Arthro xylose i 39.2 2.5E+02 0.0055 27.8 9.9 98 74-178 27-130 (382)
163 cd02874 GH18_CFLE_spore_hydrol 39.1 1.1E+02 0.0023 29.0 7.0 62 77-143 7-69 (313)
164 PRK13347 coproporphyrinogen II 38.9 60 0.0013 32.7 5.6 60 81-145 151-214 (453)
165 PRK07094 biotin synthase; Prov 38.6 59 0.0013 30.9 5.2 58 80-140 127-186 (323)
166 PF01055 Glyco_hydro_31: Glyco 37.5 1.1E+02 0.0025 30.2 7.3 109 80-191 44-184 (441)
167 PRK06582 coproporphyrinogen II 37.5 1.5E+02 0.0033 29.3 8.1 96 82-193 111-208 (390)
168 PRK09282 pyruvate carboxylase 37.4 1.3E+02 0.0029 31.6 8.0 93 81-190 98-210 (592)
169 PRK14706 glycogen branching en 36.9 2E+02 0.0043 30.6 9.2 97 79-176 167-299 (639)
170 PF01120 Alpha_L_fucos: Alpha- 36.6 1E+02 0.0022 30.0 6.5 59 85-143 97-162 (346)
171 PRK09389 (R)-citramalate synth 36.5 1.1E+02 0.0024 31.3 7.1 107 81-191 75-200 (488)
172 PRK01060 endonuclease IV; Prov 36.4 1E+02 0.0022 28.3 6.3 54 78-136 11-64 (281)
173 PF01261 AP_endonuc_2: Xylose 36.2 30 0.00065 29.7 2.6 63 78-140 70-133 (213)
174 cd06604 GH31_glucosidase_II_Ma 36.2 2.6E+02 0.0056 26.9 9.3 107 81-191 26-163 (339)
175 TIGR02104 pulA_typeI pullulana 35.4 77 0.0017 33.3 5.9 22 118-139 228-249 (605)
176 cd08576 GDPD_like_SMaseD_PLD G 35.3 2.9E+02 0.0062 26.2 9.1 103 82-190 10-126 (265)
177 PRK13209 L-xylulose 5-phosphat 34.7 3.6E+02 0.0077 24.7 9.7 54 80-137 22-75 (283)
178 cd06589 GH31 The enzymes of gl 34.4 1.5E+02 0.0033 27.4 7.1 91 81-191 26-120 (265)
179 PRK06256 biotin synthase; Vali 34.3 72 0.0016 30.5 5.1 57 80-139 150-207 (336)
180 PF10566 Glyco_hydro_97: Glyco 34.2 65 0.0014 30.6 4.6 68 81-159 108-175 (273)
181 PRK05660 HemN family oxidoredu 33.9 1.8E+02 0.004 28.5 8.0 95 81-191 106-203 (378)
182 TIGR02159 PA_CoA_Oxy4 phenylac 33.7 52 0.0011 28.2 3.6 56 72-136 35-91 (146)
183 PF04055 Radical_SAM: Radical 33.1 63 0.0014 26.1 3.9 52 82-135 90-143 (166)
184 cd02742 GH20_hexosaminidase Be 33.0 1.3E+02 0.0028 28.6 6.5 63 80-148 17-98 (303)
185 PRK13398 3-deoxy-7-phosphohept 32.5 1.6E+02 0.0035 27.6 7.0 72 74-149 36-108 (266)
186 PLN02923 xylose isomerase 32.4 5.6E+02 0.012 26.2 12.1 69 84-159 128-201 (478)
187 TIGR00538 hemN oxygen-independ 32.2 84 0.0018 31.6 5.4 59 82-145 151-213 (455)
188 PRK13210 putative L-xylulose 5 31.8 72 0.0016 29.3 4.5 60 79-140 94-154 (284)
189 PTZ00445 p36-lilke protein; Pr 31.7 91 0.002 28.7 4.9 56 85-140 35-99 (219)
190 COG3142 CutC Uncharacterized p 31.6 76 0.0016 29.5 4.4 43 78-129 72-114 (241)
191 PF03932 CutC: CutC family; I 31.5 73 0.0016 28.8 4.3 43 78-129 71-113 (201)
192 PRK09057 coproporphyrinogen II 31.1 2.1E+02 0.0046 28.0 7.9 96 82-193 104-201 (380)
193 PRK10426 alpha-glucosidase; Pr 31.1 4.1E+02 0.009 28.2 10.4 105 81-188 223-364 (635)
194 PF13200 DUF4015: Putative gly 30.8 1.7E+02 0.0037 28.3 7.0 94 79-173 13-135 (316)
195 TIGR02635 RhaI_grampos L-rhamn 30.0 2.5E+02 0.0053 28.0 8.1 81 81-178 42-131 (378)
196 PRK12330 oxaloacetate decarbox 29.9 2.1E+02 0.0046 29.6 7.8 94 81-190 99-213 (499)
197 PF02055 Glyco_hydro_30: O-Gly 29.8 51 0.0011 33.9 3.4 101 89-191 110-236 (496)
198 TIGR02026 BchE magnesium-proto 29.6 2.7E+02 0.0058 28.4 8.5 60 82-145 287-348 (497)
199 TIGR03551 F420_cofH 7,8-dideme 28.8 1.9E+02 0.0041 27.9 7.0 90 81-186 140-234 (343)
200 cd01335 Radical_SAM Radical SA 28.5 1.3E+02 0.0027 24.9 5.1 59 81-140 87-146 (204)
201 PRK13209 L-xylulose 5-phosphat 27.9 83 0.0018 29.0 4.2 58 78-140 98-159 (283)
202 TIGR03699 mena_SCO4550 menaqui 27.9 2.6E+02 0.0055 26.8 7.7 54 81-140 142-202 (340)
203 TIGR00423 radical SAM domain p 27.5 3.1E+02 0.0068 25.9 8.2 54 81-140 106-166 (309)
204 COG5520 O-Glycosyl hydrolase [ 27.4 2.5E+02 0.0054 28.0 7.3 91 90-191 77-181 (433)
205 cd06565 GH20_GcnA-like Glycosy 27.4 2.2E+02 0.0049 27.0 7.1 62 80-148 18-86 (301)
206 TIGR02351 thiH thiazole biosyn 27.0 3.9E+02 0.0084 26.1 8.9 97 79-189 159-260 (366)
207 COG3113 Predicted NTP binding 27.0 1.4E+02 0.0029 24.1 4.6 39 94-139 40-78 (99)
208 PRK08508 biotin synthase; Prov 26.7 1.4E+02 0.0031 27.9 5.6 56 81-139 101-157 (279)
209 PLN02925 4-hydroxy-3-methylbut 26.6 2E+02 0.0044 31.0 7.1 51 120-171 211-261 (733)
210 cd00019 AP2Ec AP endonuclease 26.6 2.8E+02 0.0061 25.4 7.5 54 79-137 10-64 (279)
211 PRK08207 coproporphyrinogen II 26.5 1.4E+02 0.0031 30.6 5.9 93 82-190 269-364 (488)
212 cd06522 GH25_AtlA-like AtlA is 26.5 1.4E+02 0.0029 26.3 5.1 49 83-145 16-66 (192)
213 PRK05474 xylose isomerase; Pro 26.2 3E+02 0.0066 27.9 7.9 70 83-159 83-157 (437)
214 TIGR00587 nfo apurinic endonuc 26.0 1.8E+02 0.0039 27.0 6.1 56 81-141 13-68 (274)
215 TIGR00542 hxl6Piso_put hexulos 25.5 1.7E+02 0.0036 27.0 5.8 55 79-137 16-70 (279)
216 PTZ00445 p36-lilke protein; Pr 25.5 91 0.002 28.7 3.8 51 119-173 29-89 (219)
217 PF11790 Glyco_hydro_cc: Glyco 25.2 55 0.0012 30.0 2.4 24 166-190 54-77 (239)
218 TIGR00674 dapA dihydrodipicoli 24.9 3.6E+02 0.0077 25.1 7.9 67 110-190 13-79 (285)
219 TIGR01856 hisJ_fam histidinol 24.7 1.9E+02 0.0041 26.5 5.9 61 120-182 16-79 (253)
220 PF13812 PPR_3: Pentatricopept 24.6 74 0.0016 18.7 2.2 16 120-135 19-34 (34)
221 COG1453 Predicted oxidoreducta 24.4 1.9E+02 0.004 28.9 5.9 88 88-186 13-118 (391)
222 PF04551 GcpE: GcpE protein; 24.1 5.4E+02 0.012 25.5 9.1 58 81-150 33-91 (359)
223 PF09713 A_thal_3526: Plant pr 23.8 86 0.0019 22.4 2.6 36 122-168 16-52 (54)
224 cd06568 GH20_SpHex_like A subg 23.6 3E+02 0.0064 26.6 7.3 64 80-149 19-102 (329)
225 TIGR02630 xylose_isom_A xylose 23.6 3.8E+02 0.0082 27.2 8.0 69 84-159 83-156 (434)
226 PRK09856 fructoselysine 3-epim 23.1 2.8E+02 0.006 25.3 6.7 52 80-137 14-65 (275)
227 PF04028 DUF374: Domain of unk 23.0 2.3E+02 0.005 21.4 5.0 40 86-139 27-66 (74)
228 KOG2900 Biotin synthase [Coenz 23.0 1.5E+02 0.0033 28.1 4.8 63 86-154 127-189 (380)
229 cd02871 GH18_chitinase_D-like 22.9 2.8E+02 0.006 26.4 6.9 51 119-176 60-110 (312)
230 TIGR00419 tim triosephosphate 22.9 1.9E+02 0.0041 26.2 5.4 43 86-139 75-117 (205)
231 PRK15108 biotin synthase; Prov 22.7 2E+02 0.0043 28.0 5.9 49 84-140 84-132 (345)
232 PRK13210 putative L-xylulose 5 22.6 2.1E+02 0.0046 26.1 5.9 54 80-137 17-70 (284)
233 COG3684 LacD Tagatose-1,6-bisp 22.6 1.3E+02 0.0028 28.7 4.2 56 84-143 116-171 (306)
234 PF04646 DUF604: Protein of un 22.4 38 0.00083 31.8 0.8 77 122-201 71-147 (255)
235 PRK13859 type IV secretion sys 22.3 1.2E+02 0.0025 21.6 2.9 39 6-45 4-46 (55)
236 COG3280 TreY Maltooligosyl tre 22.0 3.3E+02 0.0072 29.8 7.6 60 81-140 21-89 (889)
237 PLN02561 triosephosphate isome 21.9 2.2E+02 0.0048 26.6 5.8 49 85-140 81-129 (253)
238 PRK15492 triosephosphate isome 21.9 2E+02 0.0044 27.0 5.6 48 86-140 88-135 (260)
239 smart00052 EAL Putative diguan 21.9 1.8E+02 0.0038 25.4 5.0 61 73-138 149-209 (241)
240 PRK05660 HemN family oxidoredu 21.8 3.4E+02 0.0073 26.6 7.4 72 74-146 169-245 (378)
241 PRK08208 coproporphyrinogen II 21.8 2.7E+02 0.0058 27.8 6.8 69 74-145 203-276 (430)
242 PF14417 MEDS: MEDS: MEthanoge 21.6 2.4E+02 0.0052 24.6 5.8 58 77-143 103-162 (191)
243 PF02057 Glyco_hydro_59: Glyco 21.4 1.6E+02 0.0035 31.5 5.2 113 72-189 53-184 (669)
244 cd00950 DHDPS Dihydrodipicolin 21.3 4.3E+02 0.0094 24.4 7.7 66 110-189 15-80 (284)
245 PRK13347 coproporphyrinogen II 21.3 2.6E+02 0.0057 28.1 6.6 71 75-146 215-293 (453)
246 TIGR01589 A_thal_3526 uncharac 21.3 1.3E+02 0.0029 21.7 3.2 36 122-168 19-55 (57)
247 TIGR02109 PQQ_syn_pqqE coenzym 21.3 3.2E+02 0.007 26.2 7.0 58 80-139 93-152 (358)
248 cd01948 EAL EAL domain. This d 21.2 1.6E+02 0.0034 25.8 4.5 63 72-139 147-209 (240)
249 PRK00694 4-hydroxy-3-methylbut 21.2 5.4E+02 0.012 27.3 8.8 80 83-174 49-157 (606)
250 PRK12465 xylose isomerase; Pro 20.9 8.3E+02 0.018 24.9 9.7 72 81-159 91-167 (445)
251 COG0149 TpiA Triosephosphate i 20.5 2.2E+02 0.0048 26.7 5.4 48 86-140 82-129 (251)
252 PRK14566 triosephosphate isome 20.5 2.2E+02 0.0048 26.8 5.5 48 86-140 89-136 (260)
253 cd00311 TIM Triosephosphate is 20.4 2.6E+02 0.0056 25.9 5.9 48 86-140 78-125 (242)
254 TIGR00539 hemN_rel putative ox 20.4 2.6E+02 0.0056 27.1 6.2 64 76-145 164-237 (360)
255 PF01261 AP_endonuc_2: Xylose 20.4 1.7E+02 0.0036 24.9 4.4 45 85-137 1-45 (213)
256 PLN02808 alpha-galactosidase 20.3 2.8E+02 0.0061 27.7 6.4 58 77-143 131-188 (386)
257 PRK08898 coproporphyrinogen II 20.0 2E+02 0.0043 28.4 5.4 61 82-146 122-184 (394)
258 cd00408 DHDPS-like Dihydrodipi 20.0 5.3E+02 0.012 23.7 8.0 67 110-190 12-78 (281)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-84 Score=637.91 Aligned_cols=285 Identities=59% Similarity=1.080 Sum_probs=265.7
Q ss_pred cccCCCCCCceehhhhhhhhhcCCCCCCCCCCccceecccc-C-CCC--CCCCcCCccccchHHHHHHHHHcCCCeeeec
Q 020989 24 YTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-G-NVP--GTGDVACDEYHKYKEDVKLMADTGLDAYRFS 99 (319)
Q Consensus 24 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~-~~~--~~~~~a~~~y~~~~eDi~l~k~lG~~~~R~s 99 (319)
+.+..||++|+||+||||||+||+.++|||++|+||.|++. + ++. .++++|||+||+|+|||+|||+||+++||||
T Consensus 32 ~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFS 111 (524)
T KOG0626|consen 32 FSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFS 111 (524)
T ss_pred ccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEE
Confidence 56889999999999999999999999999999999999987 3 322 5689999999999999999999999999999
Q ss_pred ccccccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 020989 100 ISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGD 177 (319)
Q Consensus 100 i~Wsri~P~g~--G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd 177 (319)
|+||||+|.|+ +.+|++|+++|+++|++|+++||+|+|||+|||+|++|+++||||.|++++++|.+||+.||++|||
T Consensus 112 IsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGD 191 (524)
T KOG0626|consen 112 ISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGD 191 (524)
T ss_pred eehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999997 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEecCCCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh-----------------
Q 020989 178 RVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV----------------- 240 (319)
Q Consensus 178 ~V~~W~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~----------------- 240 (319)
+||+|+|+|||++++..||..|..|||+|+....+|+.+++++++|.+.|||++|||+||++|
T Consensus 192 rVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~ 271 (524)
T KOG0626|consen 192 RVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALS 271 (524)
T ss_pred cceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEe
Confidence 999999999999999999999999999998876778999999999999999999999999999
Q ss_pred ----------------------------hcccccCCCcHHHHHHhhccCCCCCHHHHHHhcCCCcEEEEcCCCCcccccC
Q 020989 241 ----------------------------ANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDN 292 (319)
Q Consensus 241 ----------------------------~dp~~~G~yP~~~~~~~~~~lp~~~~~d~~~ik~~~DFlGlNYY~s~~V~~~ 292 (319)
++|+..|+||+.|++.+++|||.||++|.+++||+.||+|||||++.+|++.
T Consensus 272 ~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~ 351 (524)
T KOG0626|consen 272 ARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHL 351 (524)
T ss_pred eeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhcc
Confidence 7888889999999999999999999999999999999999999999999997
Q ss_pred CCCCccCCCCCccccc
Q 020989 293 PSSLKQEHRDWSADTA 308 (319)
Q Consensus 293 ~~~~~~~~~~~~~~~~ 308 (319)
..++..+..++.+|..
T Consensus 352 ~~~~~~~~~~~~~d~~ 367 (524)
T KOG0626|consen 352 KPPPDPSQPGWSTDSG 367 (524)
T ss_pred CCCCCCCCcccccccc
Confidence 7644333444555543
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.1e-79 Score=616.74 Aligned_cols=283 Identities=73% Similarity=1.295 Sum_probs=251.9
Q ss_pred HHHHHHhhhcccccccCCCCCCceehhhhhhhhhcCCCCCCCCCCccceeccccCCCC-CCCCcCCccccchHHHHHHHH
Q 020989 11 LLNLAASALTAVEYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVP-GTGDVACDEYHKYKEDVKLMA 89 (319)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~-~~~~~a~~~y~~~~eDi~l~k 89 (319)
++|||-.+-++..+.+.+||++|+||+||||||+||++++|||++|+||.+.+.+... .++++||||||||+|||++||
T Consensus 13 ~~~~~~~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~EDi~lmk 92 (497)
T PLN02998 13 LLALALTAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKEDVKLMA 92 (497)
T ss_pred HHHhcccccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHHHHHHHH
Confidence 3444433334445778889999999999999999999999999999999998754221 367889999999999999999
Q ss_pred HcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHH
Q 020989 90 DTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYAD 169 (319)
Q Consensus 90 ~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~ 169 (319)
+||+++|||||+|+||+|+|+|.+|++|+++|+++|+.|+++||+|+|||+|||+|+||+++||||.|++++++|++||+
T Consensus 93 ~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~ 172 (497)
T PLN02998 93 DMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYAD 172 (497)
T ss_pred HcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHH
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEecCCCccccccccccCCCCCCCCCCC-CCCCCCCCCCchhHHHHHHHHHHHHHHHhHh--------
Q 020989 170 VCFREFGDRVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPP-LNNCSRGNSSTEPYMAVHHLLLAHASVARLV-------- 240 (319)
Q Consensus 170 ~v~~r~gd~V~~W~t~NEP~~~~~~gy~~g~~~P~~~~~~-~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~-------- 240 (319)
.|+++|||+|++|+|+|||++++..||..|.+|||.+... +..|..+++.++.++++||+++|||+|++++
T Consensus 173 ~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~ 252 (497)
T PLN02998 173 TCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQ 252 (497)
T ss_pred HHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999964311 1113333444668999999999999999987
Q ss_pred -------------------------------------hcccccCCCcHHHHHHhhccCCCCCHHHHHHhcCCCcEEEEcC
Q 020989 241 -------------------------------------ANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVIN 283 (319)
Q Consensus 241 -------------------------------------~dp~~~G~yP~~~~~~~~~~lp~~~~~d~~~ik~~~DFlGlNY 283 (319)
+||++.|+||+.+++.+++++|.|+++|+++|++++||+||||
T Consensus 253 ~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNy 332 (497)
T PLN02998 253 HGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVIN 332 (497)
T ss_pred CCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEch
Confidence 5899999999999999988899999999999999999999999
Q ss_pred CCCcccccCC
Q 020989 284 YCMIYIKDNP 293 (319)
Q Consensus 284 Y~s~~V~~~~ 293 (319)
|++.+|++.+
T Consensus 333 Yts~~v~~~~ 342 (497)
T PLN02998 333 YMALYVKDNS 342 (497)
T ss_pred hcCcccccCC
Confidence 9999998643
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=2.3e-79 Score=615.15 Aligned_cols=274 Identities=66% Similarity=1.192 Sum_probs=249.0
Q ss_pred hhcccccccCCCCCCceehhhhhhhhhcCCCCCCCCCCccceeccccCCCCCCCCcCCccccchHHHHHHHHHcCCCeee
Q 020989 18 ALTAVEYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADTGLDAYR 97 (319)
Q Consensus 18 ~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~~~y~~~~eDi~l~k~lG~~~~R 97 (319)
-.|...+.+.+||++|+||+||||||+||++++|||++|+||.+.+.+.. .++++||||||||+|||+|||+||+++||
T Consensus 19 ~~~~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~~-~~~~~a~D~YhrY~eDI~Lm~~lG~~aYR 97 (503)
T PLN02849 19 GKCSSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRNM-SNGDIACDGYHKYKEDVKLMVETGLDAFR 97 (503)
T ss_pred ccccCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCCC-CCCCccccHHHhHHHHHHHHHHcCCCeEE
Confidence 34677788899999999999999999999999999999999999865322 47788999999999999999999999999
Q ss_pred ecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 020989 98 FSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGD 177 (319)
Q Consensus 98 ~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd 177 (319)
|||+|+||+|+|.|.+|++|+++|+++|+.|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.|+++|||
T Consensus 98 fSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgD 177 (503)
T PLN02849 98 FSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGN 177 (503)
T ss_pred EeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999999999889999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CcceEEecCCCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh-----------------
Q 020989 178 RVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV----------------- 240 (319)
Q Consensus 178 ~V~~W~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~----------------- 240 (319)
+|++|+|+|||++++..||..|.+|||.+......|..+++.++.++++||+++||++|++++
T Consensus 178 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~ 257 (503)
T PLN02849 178 HVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLF 257 (503)
T ss_pred cCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 999999999999999999999999999643110012222334568999999999999999986
Q ss_pred ----------------------------hcccccCCCcHHHHHHhhccCCCCCHHHHHHhcCCCcEEEEcCCCCcccccC
Q 020989 241 ----------------------------ANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDN 292 (319)
Q Consensus 241 ----------------------------~dp~~~G~yP~~~~~~~~~~lp~~~~~d~~~ik~~~DFlGlNYY~s~~V~~~ 292 (319)
+||++.|+||+.|++.++.++|.++++|+++|++++||||||||++.+|+..
T Consensus 258 ~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~ 337 (503)
T PLN02849 258 ALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNI 337 (503)
T ss_pred CceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccC
Confidence 5899999999999999988899999999999999999999999999999863
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=4.6e-78 Score=605.87 Aligned_cols=269 Identities=64% Similarity=1.131 Sum_probs=243.6
Q ss_pred ccccCCCCCCceehhhhhhhhhcCCCCCCCCCCccceeccccCCCCCCCCcCCccccchHHHHHHHHHcCCCeeeecccc
Q 020989 23 EYTKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFSISW 102 (319)
Q Consensus 23 ~~~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~~~y~~~~eDi~l~k~lG~~~~R~si~W 102 (319)
.+.+.+||++|+||+||||||+||++++|||++|+||.+.+... ..++++||||||||+|||++||+||+++|||||+|
T Consensus 22 ~~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~~-~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsW 100 (504)
T PLN02814 22 AFTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCYN-GGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISW 100 (504)
T ss_pred ccccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeeccC-CCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccH
Confidence 36778899999999999999999999999999999999876311 14778899999999999999999999999999999
Q ss_pred cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceE
Q 020989 103 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYW 182 (319)
Q Consensus 103 sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W 182 (319)
|||+|+|+|.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|++|
T Consensus 101 sRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~W 180 (504)
T PLN02814 101 SRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLW 180 (504)
T ss_pred hhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCccccccccccCCCCCCCCCCCC-CCCCCCCCCchhHHHHHHHHHHHHHHHhHh---------------------
Q 020989 183 TTVNEPNGFAMVGYDFGIAPPKRCSPPL-NNCSRGNSSTEPYMAVHHLLLAHASVARLV--------------------- 240 (319)
Q Consensus 183 ~t~NEP~~~~~~gy~~g~~~P~~~~~~~-~~~~~~~~~~~~~~a~hnll~Aha~Av~~~--------------------- 240 (319)
+|+|||++++..||..|.. ||.++... ..|.+++..++.++++||+++|||+||+++
T Consensus 181 iT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~ 259 (504)
T PLN02814 181 TTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGL 259 (504)
T ss_pred EeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCcee
Confidence 9999999999999998874 87543210 112223344578999999999999999997
Q ss_pred ------------------------hcccccCCCcHHHHHHhhccCCCCCHHHHHHhcCCCcEEEEcCCCCcccccCC
Q 020989 241 ------------------------ANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDNP 293 (319)
Q Consensus 241 ------------------------~dp~~~G~yP~~~~~~~~~~lp~~~~~d~~~ik~~~DFlGlNYY~s~~V~~~~ 293 (319)
+||++.|+||+.|++.++.++|.|+++|+++|++++||||||||++.+|+..+
T Consensus 260 ~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~ 336 (504)
T PLN02814 260 SPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRP 336 (504)
T ss_pred ecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCC
Confidence 58999999999999999888999999999999999999999999999997543
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-75 Score=571.93 Aligned_cols=256 Identities=43% Similarity=0.810 Sum_probs=237.0
Q ss_pred CCCCCCceehhhhhhhhhcCCCCCCCCCCccceeccccC---CCC--CCCCcCCccccchHHHHHHHHHcCCCeeeeccc
Q 020989 27 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAG---NVP--GTGDVACDEYHKYKEDVKLMADTGLDAYRFSIS 101 (319)
Q Consensus 27 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~---~~~--~~~~~a~~~y~~~~eDi~l~k~lG~~~~R~si~ 101 (319)
.+||++|+||+||||+|+||++++|||++|+||.|.+.. +.. ..++.|+||||||+|||+|||+||++++|+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 579999999999999999999999999999999998842 322 568899999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcc
Q 020989 102 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVS 180 (319)
Q Consensus 102 Wsri~P~g~G-~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~ 180 (319)
||||+|+|.+ .+|++||++|+++||.|+++||+|+|||+|||+|.||.++||||.|++++++|++||+.|++||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999866 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh--------------------
Q 020989 181 YWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV-------------------- 240 (319)
Q Consensus 181 ~W~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~-------------------- 240 (319)
+|+||||||+++..||+.|.+||+..+ ...++|++||+++|||+|++++
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP 230 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYP 230 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCC
Confidence 999999999999999999999999764 2467999999999999999988
Q ss_pred ----------------------hcccccCCCcHHHHHHhhcc--CCCCCHHHHHHhcC-CCcEEEEcCCC-CcccccCC
Q 020989 241 ----------------------ANPLVYGDYPKTMKQNAGSR--LPAFTDRESQQIKG-SADFIGVINYC-MIYIKDNP 293 (319)
Q Consensus 241 ----------------------~dp~~~G~yP~~~~~~~~~~--lp~~~~~d~~~ik~-~~DFlGlNYY~-s~~V~~~~ 293 (319)
+||+++|.||..+.+.++.. +|.++++|+++|+. ++||||+|||+ +.+++..+
T Consensus 231 ~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~ 309 (460)
T COG2723 231 LSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEP 309 (460)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccC
Confidence 79999999999998888765 79999999999985 69999999999 44554444
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.5e-75 Score=581.90 Aligned_cols=257 Identities=34% Similarity=0.585 Sum_probs=231.3
Q ss_pred cCCCCCCceehhhhhhhhhcCCCCCCCCCCccceecccc-CCC---C-------------CCCCcCCccccchHHHHHHH
Q 020989 26 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNV---P-------------GTGDVACDEYHKYKEDVKLM 88 (319)
Q Consensus 26 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~---~-------------~~~~~a~~~y~~~~eDi~l~ 88 (319)
..+||++|+||+||||||+||++++|||++|+||.+.+. +++ . .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 457999999999999999999999999999999998763 222 0 14678999999999999999
Q ss_pred HHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHH
Q 020989 89 ADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAY 167 (319)
Q Consensus 89 k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~y 167 (319)
|+||+++|||||+||||+|+| .|.+|++|+++|+++|+.|+++||+|+|||+|||+|+||+++||||.|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 999999999999999999998 4569999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcceEEecCCCccccccccc-cCC-CCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh-----
Q 020989 168 ADVCFREFGDRVSYWTTVNEPNGFAMVGYD-FGI-APPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV----- 240 (319)
Q Consensus 168 a~~v~~r~gd~V~~W~t~NEP~~~~~~gy~-~g~-~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~----- 240 (319)
|+.|+++|||+|++|+|+|||++++..||. .|. ++||..+ ..+.++++||+++|||+|++++
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~~~ 231 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEVDP 231 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999888876 444 3665321 2457899999999999999998
Q ss_pred ------------------------------------hcccccCCCcHHHHHHhhc--cCCCCCHHHHHHhc-CCCcEEEE
Q 020989 241 ------------------------------------ANPLVYGDYPKTMKQNAGS--RLPAFTDRESQQIK-GSADFIGV 281 (319)
Q Consensus 241 ------------------------------------~dp~~~G~yP~~~~~~~~~--~lp~~~~~d~~~ik-~~~DFlGl 281 (319)
+||+.+|+||+.|++.++. .+|.|+++|+++|+ +++|||||
T Consensus 232 ~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGi 311 (478)
T PRK09593 232 ENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISF 311 (478)
T ss_pred CCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEE
Confidence 4889999999999998875 36889999999996 89999999
Q ss_pred cCCCCcccccCC
Q 020989 282 INYCMIYIKDNP 293 (319)
Q Consensus 282 NYY~s~~V~~~~ 293 (319)
|||++.+|+..+
T Consensus 312 NyYt~~~v~~~~ 323 (478)
T PRK09593 312 SYYSSRVASGDP 323 (478)
T ss_pred ecccCcccccCC
Confidence 999999998643
No 7
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=6.2e-76 Score=586.19 Aligned_cols=258 Identities=55% Similarity=1.027 Sum_probs=233.1
Q ss_pred cCCCCCCceehhhhhhhhhcCCCCCCCCCCccceecccc-CCCC--CCCCcCCccccchHHHHHHHHHcCCCeeeecccc
Q 020989 26 KNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVP--GTGDVACDEYHKYKEDVKLMADTGLDAYRFSISW 102 (319)
Q Consensus 26 ~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~--~~~~~a~~~y~~~~eDi~l~k~lG~~~~R~si~W 102 (319)
+.+||++|+||+||||||+||++++|||++|+||.|++. +++. .+++.||||||||+|||++||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 457999999999999999999999999999999999887 4433 4688999999999999999999999999999999
Q ss_pred cccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcce
Q 020989 103 SRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSY 181 (319)
Q Consensus 103 sri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~ 181 (319)
+||+|+| .|.+|++++++|+++|+.|+++||+|+|||+||++|+||++ +|||.|+++++.|++||+.|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999998 89999999999999999999999999999999999999998 799999999999999999999999999999
Q ss_pred EEecCCCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh---------------------
Q 020989 182 WTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV--------------------- 240 (319)
Q Consensus 182 W~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~--------------------- 240 (319)
|+|+|||++.+..||+.|.+||+..+ ..+.++++||+++||++|++++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~ 229 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPL 229 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEES
T ss_pred EEeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCC
Confidence 99999999999999999999999543 3578899999999999999999
Q ss_pred ----------------------hcccccCCCcHHHHHHhhcc--CCCCCHHHHHHhcCCCcEEEEcCCCCcccccCCCC
Q 020989 241 ----------------------ANPLVYGDYPKTMKQNAGSR--LPAFTDRESQQIKGSADFIGVINYCMIYIKDNPSS 295 (319)
Q Consensus 241 ----------------------~dp~~~G~yP~~~~~~~~~~--lp~~~~~d~~~ik~~~DFlGlNYY~s~~V~~~~~~ 295 (319)
+||++.|+||+.+++.++++ +|.|+++|++.|++++||+|||||++.+|+..+..
T Consensus 230 ~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~ 308 (455)
T PF00232_consen 230 SPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNP 308 (455)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSS
T ss_pred CccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCccc
Confidence 78999999999999999987 99999999999999999999999999999988743
No 8
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=7.9e-75 Score=578.93 Aligned_cols=253 Identities=34% Similarity=0.649 Sum_probs=231.7
Q ss_pred CCCCCCceehhhhhhhhhcCCCCCCCCCCccceeccccCCCCCCCCcCCccccchHHHHHHHHHcCCCeeeecccccccc
Q 020989 27 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRLI 106 (319)
Q Consensus 27 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~ 106 (319)
.+||++|+||+||||||+||+++++||++|+||.+.+.... .++++||||||||+|||+|||+||+++|||||+||||+
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~-~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~ 80 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW-YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIF 80 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC-CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhcc
Confidence 35999999999999999999999999999999998754211 36788999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEecC
Q 020989 107 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVN 186 (319)
Q Consensus 107 P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~N 186 (319)
|+|+|.+|++++++|+++|+.|+++||+|+|||+|||+|+||+++ |||.|++++++|++||+.|+++||+ |++|+|+|
T Consensus 81 P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~N 158 (467)
T TIGR01233 81 PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFN 158 (467)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEec
Confidence 998899999999999999999999999999999999999999876 9999999999999999999999998 99999999
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh--------------------------
Q 020989 187 EPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV-------------------------- 240 (319)
Q Consensus 187 EP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~-------------------------- 240 (319)
||++++..||+.|.+||+.+.. .++.++++||+++|||+||+++
T Consensus 159 EP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~ 228 (467)
T TIGR01233 159 EIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENP 228 (467)
T ss_pred chhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCH
Confidence 9999999999999999995321 1357899999999999999998
Q ss_pred -----------------hcccccCCCcHHHHHHhhc----c--CCCCCHHHHHHh---cCCCcEEEEcCCCCcccccC
Q 020989 241 -----------------ANPLVYGDYPKTMKQNAGS----R--LPAFTDRESQQI---KGSADFIGVINYCMIYIKDN 292 (319)
Q Consensus 241 -----------------~dp~~~G~yP~~~~~~~~~----~--lp~~~~~d~~~i---k~~~DFlGlNYY~s~~V~~~ 292 (319)
+||+++|+||+.|++.++. + .|.++++|+++| ++++||||||||++.+|++.
T Consensus 229 ~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~ 306 (467)
T TIGR01233 229 ADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAF 306 (467)
T ss_pred HHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccC
Confidence 5889999999999887753 2 377999999999 47899999999999999863
No 9
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=8.3e-75 Score=579.47 Aligned_cols=253 Identities=36% Similarity=0.688 Sum_probs=231.5
Q ss_pred CCCCCCceehhhhhhhhhcCCCCCCCCCCccceeccccCCCCCCCCcCCccccchHHHHHHHHHcCCCeeeecccccccc
Q 020989 27 NDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRLI 106 (319)
Q Consensus 27 ~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~ 106 (319)
.+||++|+||+||||||+||++++|||++|+||.+.+.... .++++||||||||+|||+|||+||+++|||||+||||+
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~-~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~ 81 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYW-FTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIF 81 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCC-CCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcC
Confidence 46999999999999999999999999999999999864221 37889999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEecC
Q 020989 107 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVN 186 (319)
Q Consensus 107 P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~N 186 (319)
|+|+|.+|++++++|+++|+.|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|+|+|
T Consensus 82 P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~N 159 (469)
T PRK13511 82 PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFN 159 (469)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEcc
Confidence 998899999999999999999999999999999999999999976 9999999999999999999999999 99999999
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh--------------------------
Q 020989 187 EPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV-------------------------- 240 (319)
Q Consensus 187 EP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~-------------------------- 240 (319)
||++++..||..|.+|||.+.. .++.++++||+++|||+|++++
T Consensus 160 EP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~ 229 (469)
T PRK13511 160 EIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNP 229 (469)
T ss_pred chhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCH
Confidence 9999999999999999996521 1357899999999999999988
Q ss_pred -----------------hcccccCCCcHHHHHHhh----c--cCCCCCHHHHHHhcC---CCcEEEEcCCCCcccccC
Q 020989 241 -----------------ANPLVYGDYPKTMKQNAG----S--RLPAFTDRESQQIKG---SADFIGVINYCMIYIKDN 292 (319)
Q Consensus 241 -----------------~dp~~~G~yP~~~~~~~~----~--~lp~~~~~d~~~ik~---~~DFlGlNYY~s~~V~~~ 292 (319)
+||++.|+||+.|++.++ + ..+.|+++|+++|++ ++||||||||++.+|++.
T Consensus 230 ~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~ 307 (469)
T PRK13511 230 EDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAY 307 (469)
T ss_pred HHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecC
Confidence 588999999999988764 2 124799999999964 579999999999999863
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.5e-74 Score=576.23 Aligned_cols=253 Identities=35% Similarity=0.631 Sum_probs=225.7
Q ss_pred CCCCCceehhhhhhhhhcCCCCCCCCCCccceecc---cc--CCCC-----C---CCCcCCccccchHHHHHHHHHcCCC
Q 020989 28 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFA---HA--GNVP-----G---TGDVACDEYHKYKEDVKLMADTGLD 94 (319)
Q Consensus 28 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~~--~~~~-----~---~~~~a~~~y~~~~eDi~l~k~lG~~ 94 (319)
+||++|+||+||||||+||++++|||++|+||.+. +. +++. . ++++||||||||+|||++||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999988 31 2221 1 4578999999999999999999999
Q ss_pred eeeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHH
Q 020989 95 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFR 173 (319)
Q Consensus 95 ~~R~si~Wsri~P~g~-G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~ 173 (319)
+|||||+||||+|+|. |.+|++|+++|+++|+.|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999984 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcceEEecCCCcccccc-----ccc-cCC-CCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh------
Q 020989 174 EFGDRVSYWTTVNEPNGFAMV-----GYD-FGI-APPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV------ 240 (319)
Q Consensus 174 r~gd~V~~W~t~NEP~~~~~~-----gy~-~g~-~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~------ 240 (319)
+|||+|++|+|+|||++++.. ||. .|. ++||.. .....++++||+++|||+|++++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~-----------~~~~~~~~~h~~llAha~A~~~~~~~~~~ 231 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED-----------REQIMYQAAHYELVASALAVKTGHEINPD 231 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998765 444 333 255431 12346899999999999999998
Q ss_pred -----------------------------------hcccccCCCcHHHHHHhhcc--CCCCCHHHHHHh-cCCCcEEEEc
Q 020989 241 -----------------------------------ANPLVYGDYPKTMKQNAGSR--LPAFTDRESQQI-KGSADFIGVI 282 (319)
Q Consensus 241 -----------------------------------~dp~~~G~yP~~~~~~~~~~--lp~~~~~d~~~i-k~~~DFlGlN 282 (319)
+||+++|+||+.|++.++++ .|.|+++|+++| ++++||||||
T Consensus 232 ~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiN 311 (476)
T PRK09589 232 FQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFS 311 (476)
T ss_pred CcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEe
Confidence 58899999999999998764 478999999999 5899999999
Q ss_pred CCCCccccc
Q 020989 283 NYCMIYIKD 291 (319)
Q Consensus 283 YY~s~~V~~ 291 (319)
||+|.+|+.
T Consensus 312 yYts~~v~~ 320 (476)
T PRK09589 312 YYMSFATKF 320 (476)
T ss_pred cccCccccc
Confidence 999999975
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=9.6e-74 Score=571.94 Aligned_cols=257 Identities=33% Similarity=0.659 Sum_probs=230.0
Q ss_pred ccCCCCCCceehhhhhhhhhcCCCCCCCCCCccceecc---cc--CCC-----C---CCCCcCCccccchHHHHHHHHHc
Q 020989 25 TKNDFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV-----P---GTGDVACDEYHKYKEDVKLMADT 91 (319)
Q Consensus 25 ~~~~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~---~~--~~~-----~---~~~~~a~~~y~~~~eDi~l~k~l 91 (319)
++.+||++|+||+||||||+||++++|||++|+||.+. +. +++ . .++++||||||||+|||++||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 46779999999999999999999999999999999988 31 222 1 15678999999999999999999
Q ss_pred CCCeeeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHH
Q 020989 92 GLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADV 170 (319)
Q Consensus 92 G~~~~R~si~Wsri~P~g~-G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~ 170 (319)
|+++|||||+|+||+|+|. |.+|++++++|+++|+.|+++||+|+|||+||++|+||.++||||.|++++++|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999984 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcceEEecCCCccc-----ccccccc-CCC-CCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh---
Q 020989 171 CFREFGDRVSYWTTVNEPNGF-----AMVGYDF-GIA-PPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV--- 240 (319)
Q Consensus 171 v~~r~gd~V~~W~t~NEP~~~-----~~~gy~~-g~~-~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~--- 240 (319)
|+++|||+|++|+|+|||++. +..||.. |.+ ||+.. ...+.++++||+++|||+|++++
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 6678874 664 44321 12357999999999999999998
Q ss_pred --------------------------------------hcccccCCCcHHHHHHhhccC--CCCCHHHHHHh-cCCCcEE
Q 020989 241 --------------------------------------ANPLVYGDYPKTMKQNAGSRL--PAFTDRESQQI-KGSADFI 279 (319)
Q Consensus 241 --------------------------------------~dp~~~G~yP~~~~~~~~~~l--p~~~~~d~~~i-k~~~DFl 279 (319)
+||+++|+||+.|++.++++. |.++++|+++| ++++|||
T Consensus 231 ~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFl 310 (477)
T PRK15014 231 NPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYL 310 (477)
T ss_pred CCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEE
Confidence 488889999999999988763 78999999999 5899999
Q ss_pred EEcCCCCcccccC
Q 020989 280 GVINYCMIYIKDN 292 (319)
Q Consensus 280 GlNYY~s~~V~~~ 292 (319)
|||||+|.+|+..
T Consensus 311 GiNyYt~~~v~~~ 323 (477)
T PRK15014 311 GFSYYMTNAVKAE 323 (477)
T ss_pred EEcceeCeeeccC
Confidence 9999999999753
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.1e-72 Score=563.60 Aligned_cols=254 Identities=33% Similarity=0.588 Sum_probs=231.5
Q ss_pred CCCCCceehhhhhhhhhcCCCCCCCCCCccceecccc-CCCC----------------CCCCcCCccccchHHHHHHHHH
Q 020989 28 DFPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVP----------------GTGDVACDEYHKYKEDVKLMAD 90 (319)
Q Consensus 28 ~fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~----------------~~~~~a~~~y~~~~eDi~l~k~ 90 (319)
+||++|+||+||||||+||++++|||++|+||.+.+. +++. .++++||||||||+|||++|++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 5999999999999999999999999999999998873 2221 1457899999999999999999
Q ss_pred cCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHH
Q 020989 91 TGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYAD 169 (319)
Q Consensus 91 lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~ 169 (319)
||++++||||+|+||+|+| .+.+|++++++|+++|+.|+++||+|+|||+||++|.||.++||||.++++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998 456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEecCCCccccccccc-cCC-CCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh-------
Q 020989 170 VCFREFGDRVSYWTTVNEPNGFAMVGYD-FGI-APPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV------- 240 (319)
Q Consensus 170 ~v~~r~gd~V~~W~t~NEP~~~~~~gy~-~g~-~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~------- 240 (319)
.|+++|||+|++|+|+|||++++..||. .|. ++|+... ....++++||+++|||+|++++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~~~~ 231 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVNPQN 231 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999996 564 4776421 2357899999999999999988
Q ss_pred ----------------------------------hcccccCCCcHHHHHHhhcc--CCCCCHHHHHHhcCCCcEEEEcCC
Q 020989 241 ----------------------------------ANPLVYGDYPKTMKQNAGSR--LPAFTDRESQQIKGSADFIGVINY 284 (319)
Q Consensus 241 ----------------------------------~dp~~~G~yP~~~~~~~~~~--lp~~~~~d~~~ik~~~DFlGlNYY 284 (319)
+||+++|+||+.|++.++++ +|.|+++|+++|++++||||||||
T Consensus 232 ~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyY 311 (474)
T PRK09852 232 QVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYY 311 (474)
T ss_pred eEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccc
Confidence 48999999999999988764 789999999999999999999999
Q ss_pred CCcccccC
Q 020989 285 CMIYIKDN 292 (319)
Q Consensus 285 ~s~~V~~~ 292 (319)
++.+|+..
T Consensus 312 t~~~v~~~ 319 (474)
T PRK09852 312 ASRCASAE 319 (474)
T ss_pred cCeecccC
Confidence 99999763
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=2.1e-71 Score=549.27 Aligned_cols=251 Identities=49% Similarity=0.924 Sum_probs=234.2
Q ss_pred CCCCceehhhhhhhhhcCCCCCCCCCCccceecccc-CCCC--CCCCcCCccccchHHHHHHHHHcCCCeeeeccccccc
Q 020989 29 FPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVP--GTGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRL 105 (319)
Q Consensus 29 fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~--~~~~~a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri 105 (319)
||++|+||+||||+|+||+++++||++|+||.+.+. +++. .++++||||||+|+|||++||++|++++||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999998874 3332 3678899999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEec
Q 020989 106 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTV 185 (319)
Q Consensus 106 ~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~ 185 (319)
+|+|+|.+|++++++|+++|+.|+++||+|+|||+||++|.||.++ |||.++++++.|++||+.|+++||++|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998889999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh-------------------------
Q 020989 186 NEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV------------------------- 240 (319)
Q Consensus 186 NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~------------------------- 240 (319)
|||++.+..||..|.++|+.++ ..+.++++||+++|||+|++++
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~-----------~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~ 228 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRD-----------LRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSP 228 (427)
T ss_pred cCcceecccchhhccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCH
Confidence 9999999999999988998542 1346899999999999999998
Q ss_pred -----------------hcccccCCCcHHHHHHhhccCCCCCHHHHHHhcCCCcEEEEcCCCCcccccC
Q 020989 241 -----------------ANPLVYGDYPKTMKQNAGSRLPAFTDRESQQIKGSADFIGVINYCMIYIKDN 292 (319)
Q Consensus 241 -----------------~dp~~~G~yP~~~~~~~~~~lp~~~~~d~~~ik~~~DFlGlNYY~s~~V~~~ 292 (319)
+||++.|+||+.|++.++. +|.++++|++++++++||||||||++.+|+..
T Consensus 229 ~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 229 EDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred HHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 5899999999999998874 69999999999999999999999999999864
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.49 E-value=6.6e-14 Score=136.72 Aligned_cols=109 Identities=24% Similarity=0.428 Sum_probs=88.2
Q ss_pred cchHHHHHHHHHcCCCeeeec-ccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhC----
Q 020989 79 HKYKEDVKLMADTGLDAYRFS-ISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYG---- 153 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~s-i~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~yg---- 153 (319)
+.+++|+++||++|+|.+|+. ++|+++||+ +|.+| +.++|++|+.+.++||++++.+.+...|.|+.+++.
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 579999999999999999974 699999999 89999 888999999999999999999998999999987541
Q ss_pred ----------C------CCChhhHHHHHHHHHHHHHHhCCC--cceEEecCCCccc
Q 020989 154 ----------G------WINRMIVKDFTAYADVCFREFGDR--VSYWTTVNEPNGF 191 (319)
Q Consensus 154 ----------g------~~~~~~~~~F~~ya~~v~~r~gd~--V~~W~t~NEP~~~ 191 (319)
| ..+|...+.+.++++.+++||++. |..|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 1 124567788888889999999985 8899999999773
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.37 E-value=1.9e-12 Score=119.49 Aligned_cols=110 Identities=22% Similarity=0.363 Sum_probs=90.6
Q ss_pred chHHHHHHHHHcCCCeeeecccccccc-cCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCC-CC
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGW-IN 157 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~-P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~-~~ 157 (319)
..++|++.||++|+|++|+.+.|..++ |...+.++...++.++++|+.+.++||.+++++|+. |.|.... ++. ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 679999999999999999999998888 553456899999999999999999999999999973 7774222 223 33
Q ss_pred hhhHHHHHHHHHHHHHHhCC--CcceEEecCCCcccc
Q 020989 158 RMIVKDFTAYADVCFREFGD--RVSYWTTVNEPNGFA 192 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd--~V~~W~t~NEP~~~~ 192 (319)
....+.|.++++.+++||++ .+..|.++|||....
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 135 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGN 135 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTT
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccC
Confidence 44678899999999999955 588999999999753
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.88 E-value=6e-09 Score=96.81 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=71.8
Q ss_pred cccccccCCCCCCChhhhHHHHHHHHHHHHcCCee--eeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCC
Q 020989 101 SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP--HVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDR 178 (319)
Q Consensus 101 ~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~p--ivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~ 178 (319)
.|++++|+ +|.+| ++..|++++.++++||++ ...+.|...|.|+... ..++..+.+.+|++.+++||+++
T Consensus 2 kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~----~~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL----SKETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC----CHHHHHHHHHHHHHHHHHHhCCc
Confidence 69999999 89999 778899999999999996 3345677899998642 25667899999999999999999
Q ss_pred cceEEecCCCccc
Q 020989 179 VSYWTTVNEPNGF 191 (319)
Q Consensus 179 V~~W~t~NEP~~~ 191 (319)
|..|.++|||...
T Consensus 74 i~~wdV~NE~~~~ 86 (254)
T smart00633 74 IYAWDVVNEALHD 86 (254)
T ss_pred ceEEEEeeecccC
Confidence 9999999999863
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=8.1e-09 Score=107.19 Aligned_cols=119 Identities=19% Similarity=0.351 Sum_probs=93.0
Q ss_pred cchHHHHHHHHHcCCCeeeec-ccccccccCCCCCCChhhhHHHHHH-HHHHHHcCCeeeeee-cCCCCcHHHHHhh---
Q 020989 79 HKYKEDVKLMADTGLDAYRFS-ISWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHLDLPQALEDEY--- 152 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~s-i~Wsri~P~g~G~~n~~~l~~yd~~-id~l~~~GI~pivtL-~H~~~P~wl~~~y--- 152 (319)
..|++|+++||++|+|.+|++ ++|++++|+ +|.+| +.+.|.. ++.+.+.||.+++.. .....|.|+.++|
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 357889999999999999995 599999999 99999 5588888 999999999999998 7789999998765
Q ss_pred ------------CCCCChhh-HHHHHHHHHH----HHHH-hCCC--cceEEecCCCcc-ccccccccCCC
Q 020989 153 ------------GGWINRMI-VKDFTAYADV----CFRE-FGDR--VSYWTTVNEPNG-FAMVGYDFGIA 201 (319)
Q Consensus 153 ------------gg~~~~~~-~~~F~~ya~~----v~~r-~gd~--V~~W~t~NEP~~-~~~~gy~~g~~ 201 (319)
++|.+-+. -..|.+|++. +.+| ||+. |..|.+-||-.. .++..|....|
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f 175 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAF 175 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHH
Confidence 34532221 1246666655 7788 8874 899999999877 55555544433
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1.3e-06 Score=86.70 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHh--h-CCC
Q 020989 82 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE--Y-GGW 155 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~Wsri~P~g---~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~--y-gg~ 155 (319)
++|+..||+.|+|++|+.+.|..+.+.+ +...+...+.+.+++|+.+++.||.+++++|+..-+.--.+. + +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866655542 222324556699999999999999999999985522211111 0 112
Q ss_pred C-ChhhHHHHHHHHHHHHHHhCCC--cceEEecCCCcc
Q 020989 156 I-NRMIVKDFTAYADVCFREFGDR--VSYWTTVNEPNG 190 (319)
Q Consensus 156 ~-~~~~~~~F~~ya~~v~~r~gd~--V~~W~t~NEP~~ 190 (319)
. ..+.++++.+-++.++.||++. |....+.|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3457799999999999999984 556789999996
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.32 E-value=2.1e-06 Score=87.09 Aligned_cols=108 Identities=24% Similarity=0.436 Sum_probs=65.5
Q ss_pred chHHHHHHHH-HcCCCeeeec--c--ccccccc-CCCCC--CChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHh
Q 020989 80 KYKEDVKLMA-DTGLDAYRFS--I--SWSRLIP-NGRGP--VNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE 151 (319)
Q Consensus 80 ~~~eDi~l~k-~lG~~~~R~s--i--~Wsri~P-~g~G~--~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ 151 (319)
.+++.+..++ ++|++.+|+- + +..-..+ ++.|. +| +...|+++|.|.++||+|+|.|.. +|.++...
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 4667777775 9999999986 2 2222222 22232 67 889999999999999999999985 78777432
Q ss_pred h------CCCC-ChhhHHHHHHHHHHHHH----HhCC-Ccc--eEEecCCCcccc
Q 020989 152 Y------GGWI-NRMIVKDFTAYADVCFR----EFGD-RVS--YWTTVNEPNGFA 192 (319)
Q Consensus 152 y------gg~~-~~~~~~~F~~ya~~v~~----r~gd-~V~--~W~t~NEP~~~~ 192 (319)
. .|+. .|+..+.+.++++.+++ |||. .|. +|++||||++..
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~ 169 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKD 169 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTT
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCccc
Confidence 1 2222 35567788877766655 5552 355 568999999853
No 20
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.15 E-value=8.1e-06 Score=78.55 Aligned_cols=123 Identities=16% Similarity=0.250 Sum_probs=88.5
Q ss_pred CCCCceehhhhhhhhhcCCCCCCCCCCccceeccccCCCCCCCCcCCccccchHHHHHHHHHcCCCeeeec--ccccccc
Q 020989 29 FPPGFIFGSGTSAYQVEGAANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFS--ISWSRLI 106 (319)
Q Consensus 29 fp~~FlwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~~~y~~~~eDi~l~k~lG~~~~R~s--i~Wsri~ 106 (319)
...+|.+|+|.+..++++.. ....+-.--+|.+-.. ..|..++
T Consensus 6 ~~~~f~~G~av~~~~~~~~~-----------------------------------~~~~~~~~~Fn~~t~eN~~Kw~~~e 50 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP-----------------------------------RYRELFAKHFNSVTPENEMKWGSIE 50 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH-----------------------------------HHHHHHHHH-SEEEESSTTSHHHHE
T ss_pred HhccCCEEEEechhHcCCcH-----------------------------------HHHHHHHHhCCeeeeccccchhhhc
Confidence 35778999999888888630 1122222345655554 7899999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCeeee--eecCCCCcHHHHHhhCCCCChh---hHHHHHHHHHHHHHHhCC--Cc
Q 020989 107 PNGRGPVNPKGLQYYNNLINELISYGIQPHV--TLHHLDLPQALEDEYGGWINRM---IVKDFTAYADVCFREFGD--RV 179 (319)
Q Consensus 107 P~g~G~~n~~~l~~yd~~id~l~~~GI~piv--tL~H~~~P~wl~~~ygg~~~~~---~~~~F~~ya~~v~~r~gd--~V 179 (319)
|. +|.+| ++..|++++.++++||++-- .+.|--.|.|+... .-+...+ ..+...+|.+.+++||++ +|
T Consensus 51 ~~-~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i 125 (320)
T PF00331_consen 51 PE-PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRI 125 (320)
T ss_dssp SB-TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTE
T ss_pred CC-CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccce
Confidence 99 89999 67789999999999999874 34466789999753 1233332 778899999999999994 89
Q ss_pred ceEEecCCCccc
Q 020989 180 SYWTTVNEPNGF 191 (319)
Q Consensus 180 ~~W~t~NEP~~~ 191 (319)
..|-+.|||...
T Consensus 126 ~~WDVvNE~i~~ 137 (320)
T PF00331_consen 126 YAWDVVNEAIDD 137 (320)
T ss_dssp SEEEEEES-B-T
T ss_pred EEEEEeeecccC
Confidence 999999998754
No 21
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.14 E-value=2.7e-05 Score=75.29 Aligned_cols=131 Identities=20% Similarity=0.289 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecC---CCCcHHHHHhhCCCCC-
Q 020989 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---LDLPQALEDEYGGWIN- 157 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H---~~~P~wl~~~ygg~~~- 157 (319)
++=+++||+.|+|.+|+-+ | +.|...|..| ++.-.++..+++++||+++|++|- |.=|.-- ..-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q-~~P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQ-NKPAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB--B--TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCC-CCCccCCCC
Confidence 4457999999999999988 3 5666226666 778889999999999999999983 2222111 01146876
Q ss_pred --hhhHHHHHHHHHHHHHHhCC---CcceEEecCCCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 020989 158 --RMIVKDFTAYADVCFREFGD---RVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLA 232 (319)
Q Consensus 158 --~~~~~~F~~ya~~v~~r~gd---~V~~W~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~A 232 (319)
.+..++..+|.+.+.+.+++ .++.+++=||.+.-.. +|-+.. ..+..+-.++.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ll~a 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAKLLNA 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHHHHHH
Confidence 56778888999988877655 5889999999875432 233321 224455578888
Q ss_pred HHHHHhHh
Q 020989 233 HASVARLV 240 (319)
Q Consensus 233 ha~Av~~~ 240 (319)
-.+||+..
T Consensus 159 g~~AVr~~ 166 (332)
T PF07745_consen 159 GIKAVREV 166 (332)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHhc
Confidence 88888875
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.00 E-value=2.2e-05 Score=75.57 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec--------CCCCcHHHHH
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HLDLPQALED 150 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~--------H~~~P~wl~~ 150 (319)
..|++-++.||++|+|++-+-+.|.--||. +|.+|.++..=.+.+|+.++++||.+++-.- .-++|.|+..
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 568888999999999999999999999999 8999999888899999999999999887543 2359999986
Q ss_pred hhCCC---CChhhHHHHHHHHHHHHHHhCC-------CcceEEecCCCc
Q 020989 151 EYGGW---INRMIVKDFTAYADVCFREFGD-------RVSYWTTVNEPN 189 (319)
Q Consensus 151 ~ygg~---~~~~~~~~F~~ya~~v~~r~gd-------~V~~W~t~NEP~ 189 (319)
+.+.. .++...++-.+|.+.+++...+ -|...++=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 63332 2445666666777777666554 366788999966
No 23
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.58 E-value=0.00015 Score=71.37 Aligned_cols=106 Identities=15% Similarity=0.336 Sum_probs=80.8
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec-C-----------CCCc
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------LDLP 145 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~-H-----------~~~P 145 (319)
+.-.+.+++.+|++|++.+-+.+-|.-+|+.+++++| |..|+++.+.+++.|++..+.|. | ..+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4578999999999999999999999999999899999 88899999999999999988773 3 4789
Q ss_pred HHHHHhh-----------CC--------CCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCc
Q 020989 146 QALEDEY-----------GG--------WINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 146 ~wl~~~y-----------gg--------~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~ 189 (319)
.|+.+.. |. |....+++.|.+|-+...++|.+.. -|+-|..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 9987531 22 3333348999999999999987754 4555544
No 24
>PLN00197 beta-amylase; Provisional
Probab=97.51 E-value=0.00037 Score=70.67 Aligned_cols=109 Identities=17% Similarity=0.298 Sum_probs=86.1
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec-C-----------CCC
Q 020989 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------LDL 144 (319)
Q Consensus 77 ~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~-H-----------~~~ 144 (319)
.-...+..++.+|++|++.+-+.+-|--+|+++++++| |.-|+++++.+++.|++..+.|. | ..+
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpL 201 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPL 201 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 34458889999999999999999999999999899999 88899999999999999888874 4 269
Q ss_pred cHHHHHhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 145 PQALEDEY-----------GGW----------------INRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 145 P~wl~~~y-----------gg~----------------~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
|.|+.+.. .|- ..+.-++.|.+|-+-..+.|.+.+. -|+.|..+
T Consensus 202 P~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 202 PKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred CHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 99987521 121 1233478899999888888877654 35666544
No 25
>PLN02803 beta-amylase
Probab=97.51 E-value=0.00035 Score=70.62 Aligned_cols=109 Identities=17% Similarity=0.301 Sum_probs=85.6
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec-C-----------CCC
Q 020989 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------LDL 144 (319)
Q Consensus 77 ~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~-H-----------~~~ 144 (319)
.-...+.+++.+|++|++.+-+.+-|--+|+++++++| |..|+++++.+++.|++..+.|. | ..+
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 181 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPL 181 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 34557889999999999999999999999999899999 88899999999999999888874 4 369
Q ss_pred cHHHHHhh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 145 PQALEDEY-----------GG----------------WINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 145 P~wl~~~y-----------gg----------------~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
|.|+.+.. .| +..+.-++.|.+|-+...+.|.+... -|+.|..+
T Consensus 182 P~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 182 PPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred CHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 99987521 12 12233568888888888888877553 45666544
No 26
>PLN02161 beta-amylase
Probab=97.48 E-value=0.00039 Score=69.96 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=88.3
Q ss_pred CccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec-CC-----------
Q 020989 75 CDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-HL----------- 142 (319)
Q Consensus 75 ~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~-H~----------- 142 (319)
.......+..++.+|.+|++.+-+.+-|--+|+++++++| |..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4567778889999999999999999999999998899999 88899999999999999888874 43
Q ss_pred CCcHHHHHhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 143 DLPQALEDEY-----------GGW----------------INRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 143 ~~P~wl~~~y-----------gg~----------------~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
.+|.|+.+.- .|. ..+..++.|.+|-+...+.|.+.+. -|+.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 5999987520 121 2233568899999888888877654 36666554
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=97.43 E-value=0.00086 Score=71.58 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec--------CCCCcHHHHH
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HLDLPQALED 150 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~--------H~~~P~wl~~ 150 (319)
+.|++=++.||++|+|++-.=+.|.--||. +|.+|.++..=+.++|+.+.+.|+-+|+-.- .-++|.||..
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 468888999999999999999999999999 8999999999999999999999999888643 4589999975
Q ss_pred hhCCC----CChhhHHHHHHHHHHHHHHhC---------CCcceEEecCCCcc
Q 020989 151 EYGGW----INRMIVKDFTAYADVCFREFG---------DRVSYWTTVNEPNG 190 (319)
Q Consensus 151 ~ygg~----~~~~~~~~F~~ya~~v~~r~g---------d~V~~W~t~NEP~~ 190 (319)
. .|. .++...++-.+|.+.+++..+ +-|...++=||-..
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 4 443 255667777778888877763 23667788888644
No 28
>PLN02801 beta-amylase
Probab=97.39 E-value=0.00089 Score=67.43 Aligned_cols=101 Identities=18% Similarity=0.394 Sum_probs=81.8
Q ss_pred ccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec-C-----------CC
Q 020989 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------LD 143 (319)
Q Consensus 76 ~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~-H-----------~~ 143 (319)
..-...+..++.+|++|++.+-+.+-|--+|.++++++| |.-|+++++.+++.|++..+.|. | ..
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 444567889999999999999999999999998899999 88899999999999999888774 4 36
Q ss_pred CcHHHHHhh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCCc
Q 020989 144 LPQALEDEY-----------GG----------------WINRMIVKDFTAYADVCFREFGDRV 179 (319)
Q Consensus 144 ~P~wl~~~y-----------gg----------------~~~~~~~~~F~~ya~~v~~r~gd~V 179 (319)
+|.|+.+.. .| +..+..++.|.+|-+...++|.+.+
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999987521 12 1223356889999988888887754
No 29
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.019 Score=54.69 Aligned_cols=162 Identities=20% Similarity=0.295 Sum_probs=95.4
Q ss_pred CCCCCCceehhhhhh-hhhcCCCCCCCCCCccceeccccCCCCCCCCcCCccccchHHH-HHHHHHcCCCeeeecccccc
Q 020989 27 NDFPPGFIFGSGTSA-YQVEGAANEDGRTPSIWDTFAHAGNVPGTGDVACDEYHKYKED-VKLMADTGLDAYRFSISWSR 104 (319)
Q Consensus 27 ~~fp~~FlwG~atsa-~Q~EG~~~~~g~~~s~wd~~~~~~~~~~~~~~a~~~y~~~~eD-i~l~k~lG~~~~R~si~Wsr 104 (319)
...|++|+.|+-.|. .|+|-. +++ |.. .++ -++| ++.+|+.|+|.+|+-|-
T Consensus 33 ~~~~~dFikGaDis~l~~lE~~---Gvk-------f~d-----~ng---------~~qD~~~iLK~~GvNyvRlRvw--- 85 (403)
T COG3867 33 ENSPNDFIKGADISSLIELENS---GVK-------FFD-----TNG---------VRQDALQILKNHGVNYVRLRVW--- 85 (403)
T ss_pred cCChHHhhccccHHHHHHHHHc---Cce-------EEc-----cCC---------hHHHHHHHHHHcCcCeEEEEEe---
Confidence 458999999997654 566632 111 111 111 1344 79999999999999872
Q ss_pred cccC---C----CCCCChhhhHHHHHHHHHHHHcCCeeeeeec---CCCCcHHHHHhhCCCCCh---hhHHHHHHHHHHH
Q 020989 105 LIPN---G----RGPVNPKGLQYYNNLINELISYGIQPHVTLH---HLDLPQALEDEYGGWINR---MIVKDFTAYADVC 171 (319)
Q Consensus 105 i~P~---g----~G~~n~~~l~~yd~~id~l~~~GI~pivtL~---H~~~P~wl~~~ygg~~~~---~~~~~F~~ya~~v 171 (319)
.-|. | -|.-| ++.--++-.++++.||+++++.| ||.=|.-. ++-..|.+- ..-.+.-+|.+.+
T Consensus 86 ndP~dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~~ 161 (403)
T COG3867 86 NDPYDSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKYV 161 (403)
T ss_pred cCCccCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHHH
Confidence 2222 1 12233 55666777889999999999987 45555322 122346532 2334455566666
Q ss_pred HHHhCC---CcceEEecCCCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh
Q 020989 172 FREFGD---RVSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV 240 (319)
Q Consensus 172 ~~r~gd---~V~~W~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~ 240 (319)
.+.+++ ....-++=||-+.-. .||-|... .+.-+-.++.+-.+|++..
T Consensus 162 l~~m~~eGi~pdmVQVGNEtn~gf-------lwp~Ge~~--------------~f~k~a~L~n~g~~avrev 212 (403)
T COG3867 162 LTTMKKEGILPDMVQVGNETNGGF-------LWPDGEGR--------------NFDKMAALLNAGIRAVREV 212 (403)
T ss_pred HHHHHHcCCCccceEeccccCCce-------eccCCCCc--------------ChHHHHHHHHHHhhhhhhc
Confidence 655544 466668999976422 13433221 2333446677777777774
No 30
>PLN02905 beta-amylase
Probab=97.30 E-value=0.0013 Score=67.57 Aligned_cols=101 Identities=14% Similarity=0.250 Sum_probs=81.9
Q ss_pred CccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec-C-----------C
Q 020989 75 CDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------L 142 (319)
Q Consensus 75 ~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~-H-----------~ 142 (319)
.......+..++.+|.+|++.+-+.+-|--+|+++++++| |..|+++++.+++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3556678889999999999999999999999999899999 88899999999999999888874 4 2
Q ss_pred CCcHHHHHhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCC
Q 020989 143 DLPQALEDEY-----------GGW----------------INRMIVKDFTAYADVCFREFGDR 178 (319)
Q Consensus 143 ~~P~wl~~~y-----------gg~----------------~~~~~~~~F~~ya~~v~~r~gd~ 178 (319)
.+|.|+.+.- .|. ..+..++.|.+|-+-+.+.|.+.
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6999987520 121 12345688888888887777664
No 31
>PLN02705 beta-amylase
Probab=97.24 E-value=0.0015 Score=66.95 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=80.3
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec-C-----------CCC
Q 020989 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------LDL 144 (319)
Q Consensus 77 ~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~-H-----------~~~ 144 (319)
.-.-.+..++.+|++|++.+-+.+-|--+|.++++++| |..|+++++.+++.|++..+.|. | ..+
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 44568889999999999999999999999998899999 88899999999999999888774 4 269
Q ss_pred cHHHHHhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCC
Q 020989 145 PQALEDEY-----------GGW----------------INRMIVKDFTAYADVCFREFGDR 178 (319)
Q Consensus 145 P~wl~~~y-----------gg~----------------~~~~~~~~F~~ya~~v~~r~gd~ 178 (319)
|.|+.+.- .|- ..+..++.|.+|.+.+-+.|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99987520 121 12345688899988888887764
No 32
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.00076 Score=64.52 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=72.2
Q ss_pred cccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeee-ee-cCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 020989 99 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV-TL-HHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 99 si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~piv-tL-~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~g 176 (319)
-..|.-|+|+ +|.+| ++.-|.+.+-++++||..-- || .|--.|.|+.. .-+..+...+...++...|++||+
T Consensus 66 emKwe~i~p~-~G~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rYk 139 (345)
T COG3693 66 EMKWEAIEPE-RGRFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRYK 139 (345)
T ss_pred ccccccccCC-CCccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhcc
Confidence 4579999998 89999 66779999999999998644 22 35578999853 237778899999999999999999
Q ss_pred CCcceEEecCCCcc
Q 020989 177 DRVSYWTTVNEPNG 190 (319)
Q Consensus 177 d~V~~W~t~NEP~~ 190 (319)
+.|.-|-+.|||.-
T Consensus 140 g~~~sWDVVNE~vd 153 (345)
T COG3693 140 GSVASWDVVNEAVD 153 (345)
T ss_pred CceeEEEecccccC
Confidence 99999999999976
No 33
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.20 E-value=0.003 Score=60.02 Aligned_cols=102 Identities=14% Similarity=0.248 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCeeeecc--ccccc-c----cC-----C-C-----CCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC
Q 020989 82 KEDVKLMADTGLDAYRFSI--SWSRL-I----PN-----G-R-----GPVNPKGLQYYNNLINELISYGIQPHVTLHHLD 143 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si--~Wsri-~----P~-----g-~-----G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~ 143 (319)
+.=++..|+-|+|.+|+.+ .|.+. . |. . + ..+|++-+++.+++|+.|.++||++-+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 3447788999999999998 45443 1 11 0 1 1378999999999999999999999877664 2
Q ss_pred CcHHHHHhhCCCCC---hhhHHHHHHHHHHHHHHhCCC-cceEEecCCC
Q 020989 144 LPQALEDEYGGWIN---RMIVKDFTAYADVCFREFGDR-VSYWTTVNEP 188 (319)
Q Consensus 144 ~P~wl~~~ygg~~~---~~~~~~F~~ya~~v~~r~gd~-V~~W~t~NEP 188 (319)
.|. .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 221 11 44542 224678889999999999998 4779999984
No 34
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.76 E-value=0.0079 Score=56.91 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=62.8
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhC---
Q 020989 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYG--- 153 (319)
Q Consensus 77 ~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~yg--- 153 (319)
..+.++.|+.+||++|+|++|++- .|. + .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCccc--cCCccc
Confidence 357889999999999999999843 222 2 345677888999998776532211111 001
Q ss_pred -CCCChhhHHHHHHHHHHHHHHhCCC--cceEEecCCCc
Q 020989 154 -GWINRMIVKDFTAYADVCFREFGDR--VSYWTTVNEPN 189 (319)
Q Consensus 154 -g~~~~~~~~~F~~ya~~v~~r~gd~--V~~W~t~NEP~ 189 (319)
--.+++..+.+.+-++.+++|+.++ |-.|.+.||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~ 133 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESD 133 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCc
Confidence 0135677888888889999999985 99999999994
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.62 E-value=0.012 Score=51.54 Aligned_cols=104 Identities=16% Similarity=0.328 Sum_probs=70.8
Q ss_pred cchHHHHHHHHHcCCCeeeeccccccc-----ccCC--CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHh
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRL-----IPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE 151 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri-----~P~g--~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ 151 (319)
.+|+++++.||++|++.+=+. |+.. .|+. ++.+.....+.++.+++.+.+.||++++.|+. -|.|..+
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 479999999999999988543 4443 2331 11222234578999999999999999999984 4666642
Q ss_pred hCCCCChh-hHHHHHHHHHHHHHHhCCC--cceEEecCCCccc
Q 020989 152 YGGWINRM-IVKDFTAYADVCFREFGDR--VSYWTTVNEPNGF 191 (319)
Q Consensus 152 ygg~~~~~-~~~~F~~ya~~v~~r~gd~--V~~W~t~NEP~~~ 191 (319)
.+.+ -++.=..-++.+.++||.+ +..|-+-+|+.-.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~ 133 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY 133 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc
Confidence 1211 2233344667888899874 7778788886543
No 36
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.41 E-value=0.0081 Score=59.08 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=52.7
Q ss_pred HcCCCeeeecc---c------------ccccc--cCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhh
Q 020989 90 DTGLDAYRFSI---S------------WSRLI--PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEY 152 (319)
Q Consensus 90 ~lG~~~~R~si---~------------Wsri~--P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~y 152 (319)
.+|++.+|+.| + |.|.+ +..+|.+|..+=.-=+.++++++++|+..++ ++-+..|.|+-.
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~-- 134 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTK-- 134 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSS--
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhc--
Confidence 47788888766 2 33321 1225667654333345588999999999877 444567777643
Q ss_pred CC----------CCChhhHHHHHHHHHHHHHHhCC---CcceEEecCCCcc
Q 020989 153 GG----------WINRMIVKDFTAYADVCFREFGD---RVSYWTTVNEPNG 190 (319)
Q Consensus 153 gg----------~~~~~~~~~F~~ya~~v~~r~gd---~V~~W~t~NEP~~ 190 (319)
.| =+.++..++|++|-..|+++|.. .+++-.++|||+.
T Consensus 135 NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 135 NGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 22 14567889999999999999843 5888999999994
No 37
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.022 Score=59.17 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=88.5
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec--------CCCCcHHHH
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HLDLPQALE 149 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~--------H~~~P~wl~ 149 (319)
-+.|++=|+.+|++|+|++-.=+-|.--||. +|.+|.++--=+.++|..+.++|+-+++-+- +-++|.||.
T Consensus 48 pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 48 PEMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 3568888999999999999999999999999 8999998877778899999999998777543 668998887
Q ss_pred HhhCCC----CChhhHHHHHHHHHHHHHHhC-------CCcceEEecCCCc
Q 020989 150 DEYGGW----INRMIVKDFTAYADVCFREFG-------DRVSYWTTVNEPN 189 (319)
Q Consensus 150 ~~ygg~----~~~~~~~~F~~ya~~v~~r~g-------d~V~~W~t~NEP~ 189 (319)
.. .|- .|+.+..+..+|.+.++.+.+ +=|..-++=||-.
T Consensus 127 ~~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 127 NV-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hC-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 65 453 366788888899988887543 2356667788854
No 38
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.86 E-value=0.035 Score=57.89 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=65.6
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHh-------
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE------- 151 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~------- 151 (319)
..+..|+++||++|+|++|++- .|. + ..+++.|=+.||-++.-+.-+....|....
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~-----~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPY-----S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCC-----C-------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 3478899999999999999952 232 2 345688888999888665433222222100
Q ss_pred hCCCC----ChhhHHHHHHHHHHHHHHhCCC--cceEEecCCCc
Q 020989 152 YGGWI----NRMIVKDFTAYADVCFREFGDR--VSYWTTVNEPN 189 (319)
Q Consensus 152 ygg~~----~~~~~~~F~~ya~~v~~r~gd~--V~~W~t~NEP~ 189 (319)
...|. +++..+.+.+-++.+++|++++ |-.|.+-||+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 01222 3466778888899999999986 88999999963
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.95 E-value=0.22 Score=55.22 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=64.0
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec---CCCCcHHHHHhhC
Q 020989 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HLDLPQALEDEYG 153 (319)
Q Consensus 77 ~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~---H~~~P~wl~~~yg 153 (319)
..+.+++||++||++|+|++|++ -.|. + ..+.+.|=+.||-++--.. |.-.|. . .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~-----~-------p~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPN-----H-------PLWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCC-----C-------HHHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 35678999999999999999995 2333 1 2345778889998886642 211110 0 0
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCC--cceEEecCCCc
Q 020989 154 GWINRMIVKDFTAYADVCFREFGDR--VSYWTTVNEPN 189 (319)
Q Consensus 154 g~~~~~~~~~F~~ya~~v~~r~gd~--V~~W~t~NEP~ 189 (319)
...+++..+.+.+=++.+++|.+++ |..|.+-||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124566677777788999999986 88999999975
No 40
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=93.20 E-value=0.12 Score=40.06 Aligned_cols=82 Identities=24% Similarity=0.296 Sum_probs=38.0
Q ss_pred HHHHhCC--CcceEEecCC-CccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhHh--hcccc
Q 020989 171 CFREFGD--RVSYWTTVNE-PNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHASVARLV--ANPLV 245 (319)
Q Consensus 171 v~~r~gd--~V~~W~t~NE-P~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~Av~~~--~dp~~ 245 (319)
|+++||+ +|.+|.++|| |+... ..++. .... ...+.....+..-+.++|.+ ..|+.
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~------~~~~~-~~~~------------~~~~~~~~~l~~~~~~iR~~dP~~pvt 61 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWA------DGYPA-EWGD------------PKAEAYAEWLKEAFRWIRAVDPSQPVT 61 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-------TT-TT--TT-------------TTSHHHHHHHHHHHHHHHTT-TTS-EE
T ss_pred CchhhcCCCCEEEEEeecCCCCccc------ccccc-cccc------------hhHHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 4677776 7999999999 66211 11111 1110 11244456666666666665 44555
Q ss_pred cCCCcHHHHHHhhccCCCCCHHHHHHhc-CCCcEEEEcCC
Q 020989 246 YGDYPKTMKQNAGSRLPAFTDRESQQIK-GSADFIGVINY 284 (319)
Q Consensus 246 ~G~yP~~~~~~~~~~lp~~~~~d~~~ik-~~~DFlGlNYY 284 (319)
.|-.- ...+.++.+. ..+||+.++.|
T Consensus 62 ~g~~~-------------~~~~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 62 SGFWG-------------GDWEDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp --B---------------S-TTHHHHS--TT-SSEEB-EE
T ss_pred eeccc-------------CCHHHHHHhchhcCCEEeeecC
Confidence 44210 0112244444 56799999877
No 41
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=93.04 E-value=0.66 Score=50.22 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=65.0
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCC
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~ 157 (319)
...+++|+++||++|+|++|.| =.|+ . .++.+.|=+.||-++-...... +++..+
T Consensus 320 ~~~~~~dl~lmk~~n~N~vRts-----HyP~------~------~~~ydLcDelGllV~~Ea~~~~--------~~~~~~ 374 (808)
T COG3250 320 EDAMERDLKLMKEANMNSVRTS-----HYPN------S------EEFYDLCDELGLLVIDEAMIET--------HGMPDD 374 (808)
T ss_pred HHHHHHHHHHHHHcCCCEEEec-----CCCC------C------HHHHHHHHHhCcEEEEecchhh--------cCCCCC
Confidence 4459999999999999999998 3444 1 3455778889999887654311 133355
Q ss_pred hhhHHHHHHHHHHHHHHhCCC--cceEEecCCCcc
Q 020989 158 RMIVKDFTAYADVCFREFGDR--VSYWTTVNEPNG 190 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~--V~~W~t~NEP~~ 190 (319)
++..+...+=+++.++|-+++ |..|..-||.+.
T Consensus 375 ~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 375 PEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred cchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 556667777788889998885 899999999764
No 42
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.90 E-value=0.44 Score=52.91 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=62.9
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec---C-CCCcHHHHHhhC
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---H-LDLPQALEDEYG 153 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~---H-~~~P~wl~~~yg 153 (319)
.+.+++|+++||++|+|++|++. .|. + ..+.+.|=+.||-++--.. | |.... .+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~sH-----yP~-----~-------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTAH-----YPN-----D-------PRFYELCDIYGLFVMAETDVESHGFANVG----DI- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC-----CCC-----C-------HHHHHHHHHCCCEEEECCcccccCccccc----cc-
Confidence 56789999999999999999962 444 1 2456788889998876542 1 11100 00
Q ss_pred CC--CChhhHHHHHHHHHHHHHHhCCC--cceEEecCCCc
Q 020989 154 GW--INRMIVKDFTAYADVCFREFGDR--VSYWTTVNEPN 189 (319)
Q Consensus 154 g~--~~~~~~~~F~~ya~~v~~r~gd~--V~~W~t~NEP~ 189 (319)
.+ .++...+.|.+=++.+++|.+++ |-.|.+-||..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 11 23445567777788999999986 88999999973
No 43
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=92.47 E-value=0.057 Score=54.41 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=79.9
Q ss_pred hHHHHHHHHHcCCCeeeecccc-cccccCCCCCCChhh-hHHHHHHHHHHHHcCCeeeeeec----CCCCcHHHHHhhCC
Q 020989 81 YKEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKG-LQYYNNLINELISYGIQPHVTLH----HLDLPQALEDEYGG 154 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~W-sri~P~g~G~~n~~~-l~~yd~~id~l~~~GI~pivtL~----H~~~P~wl~~~ygg 154 (319)
.+.|++.++.+|++..|++|.- ..+ -+..|..|.+. +.+.+.+++.+...+|+++++|. |++--.|-..=.|+
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4568899999999999999643 332 23367777755 88999999999999999999986 32211111100011
Q ss_pred ------CCChhhHHHHHHHHHHHHHHhCCC--cceEEecCCCcc
Q 020989 155 ------WINRMIVKDFTAYADVCFREFGDR--VSYWTTVNEPNG 190 (319)
Q Consensus 155 ------~~~~~~~~~F~~ya~~v~~r~gd~--V~~W~t~NEP~~ 190 (319)
...++....|.+|++.+++.|+.. +-.|..-|||-+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 235667788999999999988874 778999999776
No 44
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=92.16 E-value=0.31 Score=48.36 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=71.8
Q ss_pred HHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCC--ChhhHHHHH
Q 020989 88 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWI--NRMIVKDFT 165 (319)
Q Consensus 88 ~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~--~~~~~~~F~ 165 (319)
-+|+|++-+|.---|.-++.. =-++ +.++++++|.+...|+.-+.+-.||..+.-....|.+-. .....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 368999999988888833222 2245 779999999999999544445566666654444333322 234789999
Q ss_pred HHHHHHHHHhCCC-cceE--EecCCCcccc
Q 020989 166 AYADVCFREFGDR-VSYW--TTVNEPNGFA 192 (319)
Q Consensus 166 ~ya~~v~~r~gd~-V~~W--~t~NEP~~~~ 192 (319)
++++-|+.++|-+ |.-| ..+||||..+
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCccc
Confidence 9999999999964 5555 7999999875
No 45
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=91.55 E-value=1.9 Score=41.50 Aligned_cols=87 Identities=21% Similarity=0.380 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHHcCCCeeeecc---cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCC
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSI---SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGG 154 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si---~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg 154 (319)
..||.+--++++++|+|.+-+.= .-..+. .+-++.+.++-+.++.+||++.+++. |..|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt--------~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLT--------PEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGS--------TTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcC--------HHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 46888889999999999987652 222232 23377888999999999999999997 7788754 56
Q ss_pred C-----CChhhHHHHHHHHHHHHHHhCC
Q 020989 155 W-----INRMIVKDFTAYADVCFREFGD 177 (319)
Q Consensus 155 ~-----~~~~~~~~F~~ya~~v~~r~gd 177 (319)
. .++++++.+.+=++.|.++..|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 5788999999999999998877
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=88.63 E-value=1.3 Score=38.60 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=45.8
Q ss_pred ccccchHHHHHHHHHcCCCeeeecccccccc---------cCCCCCCCh--hhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLI---------PNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 76 ~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~---------P~g~G~~n~--~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
..+....+-++.++++|++++-++--+.... |..--.+|+ ...+-++++|++|+++||++++++.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4466677888899999999998876544442 110001221 2356789999999999999999874
No 47
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=86.99 E-value=2.8 Score=42.34 Aligned_cols=96 Identities=18% Similarity=0.368 Sum_probs=59.4
Q ss_pred hHHH-HHHHHHcCCCeeeec-------ccccc-cccCC--CCCCC------h-hhhHHHHHHHHHHHHcCCeeeeeecCC
Q 020989 81 YKED-VKLMADTGLDAYRFS-------ISWSR-LIPNG--RGPVN------P-KGLQYYNNLINELISYGIQPHVTLHHL 142 (319)
Q Consensus 81 ~~eD-i~l~k~lG~~~~R~s-------i~Wsr-i~P~g--~G~~n------~-~~l~~yd~~id~l~~~GI~pivtL~H~ 142 (319)
++.| ++++|+|.+..+|+. ..|.. |-|.. +-..| + ..+ =.+++++.|+..|.+|++.+.-
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~-Gt~EF~~~~e~iGaep~~avN~- 127 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEF-GTHEFMDWCELIGAEPYIAVNL- 127 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccc-cHHHHHHHHHHhCCceEEEEec-
Confidence 5666 688999999999963 25654 33331 11111 0 011 1478999999999999999862
Q ss_pred CCcHHHHHhhCCCCChhhHHHHHHHHH--------HHHHHhCC----CcceEEecCCCc
Q 020989 143 DLPQALEDEYGGWINRMIVKDFTAYAD--------VCFREFGD----RVSYWTTVNEPN 189 (319)
Q Consensus 143 ~~P~wl~~~ygg~~~~~~~~~F~~ya~--------~v~~r~gd----~V~~W~t~NEP~ 189 (319)
| =...+....|.+||. ..-+..|. .||+|.+=||..
T Consensus 128 ----------G-srgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 128 ----------G-SRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred ----------C-CccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 1 122344556666662 22233443 499999999954
No 48
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=86.63 E-value=2.9 Score=40.32 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=50.5
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCCh
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINR 158 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~ 158 (319)
+..+.|+.+||+||+|++|+=- |-|+ .| .|+....|.++||-++++|.. |.--.++...|. .
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY~----vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~~---p~~sI~r~~P~~-s 114 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVYS----VDPS----KN------HDECMSAFADAGIYVILDLNT---PNGSINRSDPAP-S 114 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-B---TTBS--TTS-----
T ss_pred HHHHHhHHHHHHcCCCEEEEEE----eCCC----CC------HHHHHHHHHhCCCEEEEecCC---CCccccCCCCcC-C
Confidence 3678999999999999999742 4444 12 578889999999999999973 421112211110 0
Q ss_pred hhHHHHHHHHHHHHHHhCC--CcceEEecCC
Q 020989 159 MIVKDFTAYADVCFREFGD--RVSYWTTVNE 187 (319)
Q Consensus 159 ~~~~~F~~ya~~v~~r~gd--~V~~W~t~NE 187 (319)
=..+.+.+|... ++.|.. .+-.+..=||
T Consensus 115 w~~~l~~~~~~v-id~fa~Y~N~LgFf~GNE 144 (314)
T PF03198_consen 115 WNTDLLDRYFAV-IDAFAKYDNTLGFFAGNE 144 (314)
T ss_dssp --HHHHHHHHHH-HHHHTT-TTEEEEEEEES
T ss_pred CCHHHHHHHHHH-HHHhccCCceEEEEecce
Confidence 123556666555 344443 3555555566
No 49
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=84.20 E-value=5.9 Score=36.80 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHcCCeeeeeecCC--------------CCcHHHHHh----------------hCC----CCChh---h
Q 020989 118 LQYYNNLINELISYGIQPHVTLHHL--------------DLPQALEDE----------------YGG----WINRM---I 160 (319)
Q Consensus 118 l~~yd~~id~l~~~GI~pivtL~H~--------------~~P~wl~~~----------------ygg----~~~~~---~ 160 (319)
.+.++.+|+.-+++|.++|+||.=- ..|.|-..+ .++ -.+|+ .
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 4688999999999999999998611 112111000 001 11332 1
Q ss_pred HHHHHHHHHHHHHHhCCC-----cceEEecCCCccccccccccCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 020989 161 VKDFTAYADVCFREFGDR-----VSYWTTVNEPNGFAMVGYDFGIAPPKRCSPPLNNCSRGNSSTEPYMAVHHLLLAHAS 235 (319)
Q Consensus 161 ~~~F~~ya~~v~~r~gd~-----V~~W~t~NEP~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~~~~~~~a~hnll~Aha~ 235 (319)
...-.+++..+..+||.. |++|.+-|||.+..-- =-..+|-. ..+.-+.....+.|+
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T--H~dVHP~~----------------~t~~El~~r~i~~Ak 164 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHST--HRDVHPEP----------------VTYDELRDRSIEYAK 164 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHH--TTTT--S-------------------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhhccc--ccccCCCC----------------CCHHHHHHHHHHHHH
Confidence 122334566677777765 9999999999975310 00111111 224555577888999
Q ss_pred HHhHh
Q 020989 236 VARLV 240 (319)
Q Consensus 236 Av~~~ 240 (319)
|+|..
T Consensus 165 aiK~~ 169 (239)
T PF12891_consen 165 AIKAA 169 (239)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99986
No 50
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.90 E-value=2.3 Score=38.96 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=41.2
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCC-------CCCh--hhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNP--KGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G-------~~n~--~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
..+-++.+|+|||+++-++=-+..-. ..-| .+|+ -..+=++++|++|.++||++|+++.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 45668999999999999885444110 1011 1221 2466789999999999999999874
No 51
>PLN02361 alpha-amylase
Probab=80.30 E-value=3.9 Score=40.81 Aligned_cols=64 Identities=17% Similarity=0.338 Sum_probs=46.9
Q ss_pred ccccchHHHHHHHHHcCCCeeeecccccccccCCCCC-----CCh--hhhHHHHHHHHHHHHcCCeeeeee
Q 020989 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNP--KGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 76 ~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~-----~n~--~~l~~yd~~id~l~~~GI~pivtL 139 (319)
.+|....+-++.++++|++++=++=......+.|-.. +|. -..+=++++|+.|.++||++|+++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4889999999999999999998876544333332111 111 123568999999999999999975
No 52
>PLN00196 alpha-amylase; Provisional
Probab=79.51 E-value=3.7 Score=41.34 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=45.0
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCC-----CCh---hhhHHHHHHHHHHHHcCCeeeeee
Q 020989 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNP---KGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 77 ~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~-----~n~---~~l~~yd~~id~l~~~GI~pivtL 139 (319)
.|....+.++.+++||++++=++=......+.|-.. +|. -.-+=++++|+++.++||++|++.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 466678889999999999999886544433232111 221 123458999999999999999985
No 53
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=78.96 E-value=9.1 Score=36.78 Aligned_cols=99 Identities=16% Similarity=0.284 Sum_probs=65.5
Q ss_pred ccchHHHHHHHHHcCCCeeeecccc-------cccccCC---CCCC-ChhhhHHHHHHHHHHHHcCCeeeeee----c--
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISW-------SRLIPNG---RGPV-NPKGLQYYNNLINELISYGIQPHVTL----H-- 140 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~W-------sri~P~g---~G~~-n~~~l~~yd~~id~l~~~GI~pivtL----~-- 140 (319)
-...++-++.++++|+|++=+.+.+ |.++|.. .|.. ...+++.+..+|+++.++||++..-+ .
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 3456777899999999988766643 2333321 1111 11257889999999999999987543 1
Q ss_pred ---C--CCCcHHHHHhh-----------CC--CC---ChhhHHHHHHHHHHHHHHhC
Q 020989 141 ---H--LDLPQALEDEY-----------GG--WI---NRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 141 ---H--~~~P~wl~~~y-----------gg--~~---~~~~~~~F~~ya~~v~~r~g 176 (319)
+ -..|.|+..+. ++ |. +|++.+...+-++.|+++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 0 13466654211 11 33 56788899999999999995
No 54
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=77.88 E-value=7.7 Score=35.99 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=46.9
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
-.+|++...+.|++.+|+.++.+.+.-.. -+.-.++.++...+.++.+++.|+++.+++.
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 37899999999999999999877653221 2323356788999999999999999887664
No 55
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=76.98 E-value=10 Score=31.93 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCeeeeccc--ccc-cccCCCCC--CChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 83 EDVKLMADTGLDAYRFSIS--WSR-LIPNGRGP--VNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 83 eDi~l~k~lG~~~~R~si~--Wsr-i~P~g~G~--~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
+=++.+|++|+|++-+... +-- -.|+..|. +..+ -+.+.++|+.|+++||++++-+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 3368899999999999332 111 12332222 2222 47899999999999999998664
No 56
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=75.17 E-value=11 Score=35.26 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=48.1
Q ss_pred hHHHHHHHHHcCCCeeeeccccccc--ccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecC-CCCc
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRL--IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH-LDLP 145 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri--~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H-~~~P 145 (319)
-.+|++...+.|++.+|+.++=|.. ... .+.--++.++...+.+..++++|+++.+++-. |..|
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~-~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~ 139 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREAS-HGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD 139 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC
Confidence 4779999999999999998854432 222 22223567899999999999999999999853 4444
No 57
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=74.80 E-value=10 Score=34.61 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecC
Q 020989 82 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH 141 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H 141 (319)
+++++.+++.|++.+|++++-+.+.-.- .+.=.+..++...+.++.+++.|+++.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 8899999999999999999766321110 11112345788899999999999999999854
No 58
>PRK12313 glycogen branching enzyme; Provisional
Probab=74.50 E-value=13 Score=39.17 Aligned_cols=94 Identities=15% Similarity=0.266 Sum_probs=59.9
Q ss_pred cccchHHH-HHHHHHcCCCeeeeccc--------c-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee-
Q 020989 77 EYHKYKED-VKLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL- 139 (319)
Q Consensus 77 ~y~~~~eD-i~l~k~lG~~~~R~si~--------W-------sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL- 139 (319)
.|....+. ++.+|+||++++=+.=- | -.+.|. -| ..+=++++|+.|.++||++|+++
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~-~G-----t~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR-YG-----TPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 35555667 49999999999976532 2 112222 12 24468999999999999999985
Q ss_pred -cCCCCcH----HHH--------H---h-hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 020989 140 -HHLDLPQ----ALE--------D---E-YGGW-------INRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 140 -~H~~~P~----wl~--------~---~-ygg~-------~~~~~~~~F~~ya~~v~~r~g 176 (319)
.|..... ++. + . +.+| .++++.+.+.+-++.-++.||
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4653211 110 0 0 0123 367788888888888888776
No 59
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=73.97 E-value=26 Score=33.16 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=50.8
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
+-+.|++++++.|++.+++.++=|...-.. -+.--++.++...++|+.+++.|+++.+++-+|+.|
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 346799999999999999998544433221 233346778999999999999999999999887643
No 60
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=73.72 E-value=28 Score=33.98 Aligned_cols=84 Identities=18% Similarity=0.261 Sum_probs=61.8
Q ss_pred CCccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhC
Q 020989 74 ACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYG 153 (319)
Q Consensus 74 a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~yg 153 (319)
|.=||+ |+-.+..+++ |++.+|+. +|.+-. -+..+++++.++++|+-.=+...|-.++.-+.++||
T Consensus 77 ADIHFd-~~lAl~a~~~-g~dkiRIN----------PGNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg 142 (346)
T TIGR00612 77 ADIHFD-YRLAALAMAK-GVAKVRIN----------PGNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYG 142 (346)
T ss_pred EeeCCC-cHHHHHHHHh-ccCeEEEC----------CCCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcC
Confidence 444554 5555555544 99999863 555532 357899999999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHH
Q 020989 154 GWINRMIVKDFTAYADVC 171 (319)
Q Consensus 154 g~~~~~~~~~F~~ya~~v 171 (319)
+-+.+..++.-.++++.+
T Consensus 143 ~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 143 DATAEAMVQSALEEAAIL 160 (346)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 645555666666666654
No 61
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=73.33 E-value=9.9 Score=37.04 Aligned_cols=110 Identities=17% Similarity=0.442 Sum_probs=60.8
Q ss_pred ccchHHHHHHHHHcCCCeee---------------ec---------------ccccccccC-C-CCCC----ChhhhHHH
Q 020989 78 YHKYKEDVKLMADTGLDAYR---------------FS---------------ISWSRLIPN-G-RGPV----NPKGLQYY 121 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R---------------~s---------------i~Wsri~P~-g-~G~~----n~~~l~~y 121 (319)
|+||++.|+.|+--|||..= ++ +.|.|..-- | .|.+ -.+..+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67999999999999998432 11 134443211 1 1222 12345667
Q ss_pred HHHHHHHHHcCCeeeeeecCCCCcHHHHHhhC--------CC--------CChhhHHHHHHHHHHH----HHHhCCCcce
Q 020989 122 NNLINELISYGIQPHVTLHHLDLPQALEDEYG--------GW--------INRMIVKDFTAYADVC----FREFGDRVSY 181 (319)
Q Consensus 122 d~~id~l~~~GI~pivtL~H~~~P~wl~~~yg--------g~--------~~~~~~~~F~~ya~~v----~~r~gd~V~~ 181 (319)
+++++++++.||+|++--+---.|.-+.+++. .| .+| .-+.|.+.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 89999999999999998775558888887762 22 223 236777777655 46788 3444
Q ss_pred E--EecCCCc
Q 020989 182 W--TTVNEPN 189 (319)
Q Consensus 182 W--~t~NEP~ 189 (319)
+ -+|||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 4 4899943
No 62
>PRK05402 glycogen branching enzyme; Provisional
Probab=73.20 E-value=17 Score=39.05 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=59.4
Q ss_pred cccchHHHH-HHHHHcCCCeeeeccc--------cc-------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee-
Q 020989 77 EYHKYKEDV-KLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL- 139 (319)
Q Consensus 77 ~y~~~~eDi-~l~k~lG~~~~R~si~--------Ws-------ri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL- 139 (319)
.|.-..+.+ +.+|+||++++=+.=- |- .+.|. -| ..+=++++|++|.++||++|+++
T Consensus 263 ~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~-~G-----t~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 263 SYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR-FG-----TPDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344455564 8889999999976532 21 12222 12 24568999999999999999985
Q ss_pred -cCCCCc-----------HHHHH-----hhCC-------CCChhhHHHHHHHHHHHHHHhC
Q 020989 140 -HHLDLP-----------QALED-----EYGG-------WINRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 140 -~H~~~P-----------~wl~~-----~ygg-------~~~~~~~~~F~~ya~~v~~r~g 176 (319)
.|+... .+... .+.. +.++++.+.+.+-++.-+++|+
T Consensus 337 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 337 PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 465321 11110 0112 3467788888888888888776
No 63
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=72.42 E-value=15 Score=34.94 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=46.1
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~P~-g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
+-.+|+++..+.|++.+|+.++=|...-. .-+.-.++.++...+.|+.++++|+++..++.
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 45899999999999999999864433211 02333356788999999999999999886665
No 64
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=72.40 E-value=12 Score=35.59 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=55.3
Q ss_pred CccceeccccCCCCCCCCcCCccccchHHHHHHHHHcCCCeeeecccccccccCCCCC-CChhhhHHHHHHHHHHHHcCC
Q 020989 55 PSIWDTFAHAGNVPGTGDVACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-VNPKGLQYYNNLINELISYGI 133 (319)
Q Consensus 55 ~s~wd~~~~~~~~~~~~~~a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~-~n~~~l~~yd~~id~l~~~GI 133 (319)
.+.|+.|...... ..+..+.-.++++++=|+..+++|+..+=+.--|+.-.+..... .....-....++++-.+++|+
T Consensus 9 k~~W~Ww~~~~~~-~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgV 87 (273)
T PF10566_consen 9 KAAWSWWSMHNGK-GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGV 87 (273)
T ss_dssp EEEECTCCCCTTS-SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-
T ss_pred eEEEeecccCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCC
Confidence 4567776543211 12233455688899999999999999999999999733221111 111223467899999999999
Q ss_pred eeeeeecCC
Q 020989 134 QPHVTLHHL 142 (319)
Q Consensus 134 ~pivtL~H~ 142 (319)
.++|-.++-
T Consensus 88 gi~lw~~~~ 96 (273)
T PF10566_consen 88 GIWLWYHSE 96 (273)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999999873
No 65
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=72.19 E-value=12 Score=36.67 Aligned_cols=107 Identities=11% Similarity=-0.034 Sum_probs=70.4
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCC--CCcHHHHHh-----
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHL--DLPQALEDE----- 151 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~--~~P~wl~~~----- 151 (319)
-.++|++.+.+.|++.+|+.++-|.+.-.. -+.-.++.++...+.|+.+++.|+++.+++-.. .-|..+.+.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~ 151 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAE 151 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHH
Confidence 358999999999999999988766654321 232235678889999999999999998887532 122322211
Q ss_pred -h----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 152 -Y----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 152 -y----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
. -|... ++.+.++.+.+.++++ ..-.+...|-..+
T Consensus 152 ~~g~~~i~l~DT~G~~~---P~~v~~li~~l~~~~~-~~l~~H~Hnd~Gl 197 (363)
T TIGR02090 152 EAGADRINIADTVGVLT---PQKMEELIKKLKENVK-LPISVHCHNDFGL 197 (363)
T ss_pred hCCCCEEEEeCCCCccC---HHHHHHHHHHHhcccC-ceEEEEecCCCCh
Confidence 0 12333 4566777777767665 2234567787665
No 66
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=72.16 E-value=22 Score=33.40 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
-++|+++..+.|++.+|+++..+. ++...+.++.++++|+++.+.+.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 578999999999999999875443 45678888999999998887653
No 67
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=70.99 E-value=7.7 Score=40.13 Aligned_cols=65 Identities=14% Similarity=0.270 Sum_probs=44.4
Q ss_pred CCccccchHHHHHHHHHcCCCeeeecccccccccCCCCC--------CCh--hhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 74 ACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP--------VNP--KGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 74 a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~--------~n~--~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
+...+.-..+-++.+++||++++=++=-... |..... +|+ ...+-++++|+.+.++||++|+++.
T Consensus 22 ~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~--~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 22 GTGDLRGIIEKLDYLKKLGVDYIWLNPFYVS--PQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CccCHHHHHHhHHHHHHcCCCEEEECCcccC--CCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3455666778899999999999977643221 110111 121 1346789999999999999999863
No 68
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=70.55 E-value=17 Score=33.97 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecC
Q 020989 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 141 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H 141 (319)
.+|++...+.|++.+|+++..+ .++...+.++.++++|+++.+.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5789999999999999987432 2677889999999999999998865
No 69
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=70.53 E-value=8.1 Score=40.10 Aligned_cols=65 Identities=15% Similarity=0.314 Sum_probs=45.1
Q ss_pred CCccccchHHHHHHHHHcCCCeeeecccccccccCCCCC--------CCh--hhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 74 ACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP--------VNP--KGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 74 a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~--------~n~--~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
+..-+.-..+.++.+++||++++=++=-+.. |..... +|+ ...+-++++|+.+.++||++|+++.
T Consensus 28 ~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 28 GTGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CCcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4455677788899999999999987643321 210111 111 1345689999999999999999863
No 70
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=70.22 E-value=16 Score=37.20 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=61.8
Q ss_pred cccchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHh
Q 020989 77 EYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE 151 (319)
Q Consensus 77 ~y~~~~eD-----i~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ 151 (319)
.|..|.+| ++...+.|++.+|+..+-+. ++-....|+.+++.|+.+..++.+-..|..-.+.
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd-------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~ 154 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALND-------------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEY 154 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCH-------------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHH
Confidence 35667888 89999999999999986554 2345677788888888888777543335211110
Q ss_pred h--------------------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 152 Y--------------------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 152 y--------------------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
+ .|...| ....+.++.+-++++ ..-...+.|-..+
T Consensus 155 ~~~~a~~l~~~Gad~I~i~Dt~G~l~P---~~v~~Lv~~lk~~~~-vpI~~H~Hnt~Gl 209 (467)
T PRK14041 155 YLEFARELVDMGVDSICIKDMAGLLTP---KRAYELVKALKKKFG-VPVEVHSHCTTGL 209 (467)
T ss_pred HHHHHHHHHHcCCCEEEECCccCCcCH---HHHHHHHHHHHHhcC-CceEEEecCCCCc
Confidence 0 244444 455556666666775 3335567776654
No 71
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=70.17 E-value=11 Score=36.66 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=58.6
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCeee-eeecCCCCcHHHHHhhCCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWI 156 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g---~G~~n~~~l~~yd~~id~l~~~GI~pi-vtL~H~~~P~wl~~~ygg~~ 156 (319)
-++.++.++++|++.+-+++ ..+.++- -|+.. ..+-..+.|+.+++.|+..+ +++. +++|. .
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------q 163 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------Q 163 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC---------C
Confidence 36789999999999555555 3333321 23321 25567889999999999744 5554 45662 2
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcccc
Q 020989 157 NRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFA 192 (319)
Q Consensus 157 ~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~ 192 (319)
+.+.|.+-.+.+.+.=-+++..+...-+|+...
T Consensus 164 ---t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 164 ---TLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 345666666665543335666665555787644
No 72
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=69.31 E-value=19 Score=36.33 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=66.8
Q ss_pred hHHHHHHHHHcCCCeeeecc-cccc-cccCCCCCCChhhhHHHHHHHHHHHHcC-CeeeeeecCCCCcHHHHHhhCCCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si-~Wsr-i~P~g~G~~n~~~l~~yd~~id~l~~~G-I~pivtL~H~~~P~wl~~~ygg~~~ 157 (319)
-+|.++.|+++|+|.+-+++ +-+. +... -|+.. ..+-..+.|+.+++.| +.+.++|. +++|. .
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------q- 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRR-AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG---------Q- 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------C-
Confidence 36789999999999888887 4332 2211 23332 1345678899999999 66777776 56662 1
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEecCCCccccccccccCCCC
Q 020989 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAMVGYDFGIAP 202 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~~gy~~g~~~ 202 (319)
+.+.|.+=.+.+.+-=-++|..+...-||+......+..|..+
T Consensus 228 --T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 --TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2344555455554433467888888889987544334445443
No 73
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.15 E-value=12 Score=38.26 Aligned_cols=111 Identities=20% Similarity=0.436 Sum_probs=69.1
Q ss_pred ccchHHHHHHHHHcCCCeeeec----ccccccccC-----------------------C-----CCCCCh----hhhHHH
Q 020989 78 YHKYKEDVKLMADTGLDAYRFS----ISWSRLIPN-----------------------G-----RGPVNP----KGLQYY 121 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~s----i~Wsri~P~-----------------------g-----~G~~n~----~~l~~y 121 (319)
|++|+..|+-|+-.|+|..=.. +-|.+|+-. | .|...+ ..+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 7899999999999999965432 134444322 0 122221 123445
Q ss_pred HHHHHHHHHcCCeeeeeecCCCCcHHHHHhh--------CCCC------------C---hhhHHHHHHHHHHHHHHhCCC
Q 020989 122 NNLINELISYGIQPHVTLHHLDLPQALEDEY--------GGWI------------N---RMIVKDFTAYADVCFREFGDR 178 (319)
Q Consensus 122 d~~id~l~~~GI~pivtL~H~~~P~wl~~~y--------gg~~------------~---~~~~~~F~~ya~~v~~r~gd~ 178 (319)
+++|+++++-||+|++-.+---.|..+..-+ +.|. + |-+++-=..|-+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 7899999999999999877556788876533 2232 2 223333445556677889962
Q ss_pred --cceEEecCCC
Q 020989 179 --VSYWTTVNEP 188 (319)
Q Consensus 179 --V~~W~t~NEP 188 (319)
+-.=-||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 2222599984
No 74
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=68.91 E-value=16 Score=35.81 Aligned_cols=60 Identities=10% Similarity=-0.036 Sum_probs=47.0
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
-.+|+++..+.|++.+++.++=|...-.. -+.--++.++.+.++|+.++++|+++.+++.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 58999999999999999998655443221 2333467899999999999999999976664
No 75
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=68.41 E-value=21 Score=34.93 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=43.9
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 85 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 85 i~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
++.++++|.+++-+-+-|. |+.+..+|...++...++.+.|++.||..++-+.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 5778999999999999877 4423335778899999999999999999998654
No 76
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=68.22 E-value=16 Score=35.80 Aligned_cols=106 Identities=16% Similarity=0.027 Sum_probs=66.7
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC--CcHHHHHh------
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD--LPQALEDE------ 151 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~--~P~wl~~~------ 151 (319)
-++|++.+.+.|++.+|+.++-|.+.-.. -+.-.++.++...+.|+.++++|+++.++.-..+ -|..+.+-
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 153 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAE 153 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHH
Confidence 38899999999999999999776543221 1222356688899999999999999888765421 12222110
Q ss_pred h----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 152 Y----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 152 y----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
. -|... +..+.++.+.+.++++- .--+.+.|-..+
T Consensus 154 ~Ga~~i~l~DT~G~~~---P~~v~~lv~~l~~~~~v-~l~~H~HNd~Gl 198 (365)
T TIGR02660 154 AGADRFRFADTVGILD---PFSTYELVRALRQAVDL-PLEMHAHNDLGM 198 (365)
T ss_pred cCcCEEEEcccCCCCC---HHHHHHHHHHHHHhcCC-eEEEEecCCCCh
Confidence 1 12233 35666666666666642 234566676654
No 77
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=67.39 E-value=29 Score=33.29 Aligned_cols=108 Identities=14% Similarity=0.216 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCC-eeeecc-cccc-cc-cC-CCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCC
Q 020989 82 KEDVKLMADTGLD-AYRFSI-SWSR-LI-PN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWI 156 (319)
Q Consensus 82 ~eDi~l~k~lG~~-~~R~si-~Wsr-i~-P~-g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~ 156 (319)
++.+++|+++|++ .+=+++ +-+. +. .. ++| .+ .+-+.+.++.++++||.+.+.+. +++| +..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P--------~~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-ST---FEDFIRAAELARKYGAGVKAYLL-FKPP--------FLS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCC--------CCC
Confidence 7889999999988 466666 2221 22 11 122 23 56778999999999999777765 3444 222
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccccccccccCCCCC
Q 020989 157 NRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAMVGYDFGIAPP 203 (319)
Q Consensus 157 ~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~~gy~~g~~~P 203 (319)
..+.++.+.+.++.+.+ +++.|....+.=+|++....-|..|.+.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23567778777777664 45788877766677765544566676644
No 78
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=66.91 E-value=10 Score=38.39 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=44.1
Q ss_pred ccccchHHHHHHHHHcCCCeeeeccccccc--------ccCC---------CCCCChh--hhHHHHHHHHHHHHcCCeee
Q 020989 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRL--------IPNG---------RGPVNPK--GLQYYNNLINELISYGIQPH 136 (319)
Q Consensus 76 ~~y~~~~eDi~l~k~lG~~~~R~si~Wsri--------~P~g---------~G~~n~~--~l~~yd~~id~l~~~GI~pi 136 (319)
+.|....+-++.+++||++++=++=...-. .|.- .|.+|+. ..+=++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 456667788999999999999877533321 1110 0112221 34558999999999999999
Q ss_pred eee
Q 020989 137 VTL 139 (319)
Q Consensus 137 vtL 139 (319)
+++
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 986
No 79
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=66.47 E-value=21 Score=37.58 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=57.8
Q ss_pred cccchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc----HH
Q 020989 77 EYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP----QA 147 (319)
Q Consensus 77 ~y~~~~eD-----i~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P----~w 147 (319)
-|.+|.+| ++..++.|++.+|+....+.+ +.....|+.++++|.....++..=+.| ..
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 36666666 999999999999999654433 345566677777777655444321223 11
Q ss_pred HHHh------h----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 148 LEDE------Y----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 148 l~~~------y----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
+.+. . .|-..| ....+.++.+-++++ ..-...+.|-..+
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 211 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLKP---YAAYELVSRIKKRVD-VPLHLHCHATTGL 211 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCH---HHHHHHHHHHHHhcC-CeEEEEECCCCch
Confidence 1110 0 244444 455666666667773 3345678887765
No 80
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.38 E-value=31 Score=32.81 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=72.3
Q ss_pred chHHHHHHHHHcCC--CeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC---CcHHHH-----
Q 020989 80 KYKEDVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD---LPQALE----- 149 (319)
Q Consensus 80 ~~~eDi~l~k~lG~--~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~---~P~wl~----- 149 (319)
...+-++.+++.|+ +++=+.+.|..-. |.=.+|.+.+.-..++|+.|+++|+++++.+.=+- .+..-+
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 45666788888885 5777777886432 23345666666788999999999999998765221 122111
Q ss_pred ----HhhC----------------CCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCc
Q 020989 150 ----DEYG----------------GWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 150 ----~~yg----------------g~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~ 189 (319)
+..| .++||+..+.|.+..+.+...+|= --.|.=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 157889999999888888877762 44567899997
No 81
>PLN02784 alpha-amylase
Probab=66.23 E-value=14 Score=40.54 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=47.1
Q ss_pred ccccchHHHHHHHHHcCCCeeeecccccccccCCCCC-----CChh--hhHHHHHHHHHHHHcCCeeeeee
Q 020989 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 76 ~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~-----~n~~--~l~~yd~~id~l~~~GI~pivtL 139 (319)
.+|....+.++.++++|++++=++=.-....+.|-.. +|.. ..+=++.+|+.|.++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5688999999999999999998876544443333111 1211 24568999999999999999985
No 82
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=65.93 E-value=34 Score=36.00 Aligned_cols=99 Identities=10% Similarity=0.098 Sum_probs=60.0
Q ss_pred ccchHHHH-HHHHHcCCCeeeec-cccccc------ccCCCCCCCh--hhhHHHHHHHHHHHHcCCeeeeeec--CCCC-
Q 020989 78 YHKYKEDV-KLMADTGLDAYRFS-ISWSRL------IPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HLDL- 144 (319)
Q Consensus 78 y~~~~eDi-~l~k~lG~~~~R~s-i~Wsri------~P~g~G~~n~--~~l~~yd~~id~l~~~GI~pivtL~--H~~~- 144 (319)
|....+.+ +.+|+||++++=+. |....- .|..--.++. ...+=++++|+.|.++||++|+++. |...
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 44455665 89999999999884 433211 1110000110 1234589999999999999999864 5431
Q ss_pred ----------cHHHHHh-----hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 020989 145 ----------PQALEDE-----YGGW-------INRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 145 ----------P~wl~~~-----ygg~-------~~~~~~~~F~~ya~~v~~r~g 176 (319)
|.+.... +..| .++++.+.+.+-++.-+++|+
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111100 0112 457888888888888888886
No 83
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=65.71 E-value=39 Score=32.26 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=34.7
Q ss_pred HHHHHcCCCeeeeccc--ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC
Q 020989 86 KLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD 143 (319)
Q Consensus 86 ~l~k~lG~~~~R~si~--Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~ 143 (319)
+.+++.|++++-+++. -....|.-.|.............|..|+++|++++|++-.+.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~ 78 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGAS 78 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCC
Confidence 4567789998887753 222222211111101123456778899999999999887554
No 84
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=65.34 E-value=70 Score=29.62 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecC--CCCcHHHHHh------h-
Q 020989 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH--LDLPQALEDE------Y- 152 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H--~~~P~wl~~~------y- 152 (319)
.+|++..++.|++.+|+.++-+.+ +-..+.++.+++.|+++.+++.. ...|..+.+. .
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G 154 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG 154 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC
Confidence 699999999999999998766543 23577899999999999888732 2234333221 0
Q ss_pred ---------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCc
Q 020989 153 ---------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 153 ---------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~ 189 (319)
-|... ++...++.+.+-++++...-.+...|-..
T Consensus 155 ~d~i~l~DT~G~~~---P~~v~~lv~~l~~~~~~~~l~~H~Hn~~G 197 (263)
T cd07943 155 ADCVYVTDSAGAML---PDDVRERVRALREALDPTPVGFHGHNNLG 197 (263)
T ss_pred CCEEEEcCCCCCcC---HHHHHHHHHHHHHhCCCceEEEEecCCcc
Confidence 13333 45677777777777765122335566544
No 85
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=64.99 E-value=22 Score=35.08 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCC--CCcHHHHHh------h
Q 020989 82 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHL--DLPQALEDE------Y 152 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~--~~P~wl~~~------y 152 (319)
++|++.+.+.|++.+|+.++-|.+.-.. -+.--++.++...+.|+.+++.|+++.++.-.. .-|..+.+- .
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 157 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA 157 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC
Confidence 7899999999999999999766653221 233345778999999999999999998886421 112222211 0
Q ss_pred ----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 153 ----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 153 ----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
.|... +..+.++.+.+.+++ +..--+...|-..+
T Consensus 158 Ga~~I~l~DT~G~~~---P~~v~~lv~~l~~~~-~~~l~~H~Hnd~Gl 201 (378)
T PRK11858 158 GADRVRFCDTVGILD---PFTMYELVKELVEAV-DIPIEVHCHNDFGM 201 (378)
T ss_pred CCCEEEEeccCCCCC---HHHHHHHHHHHHHhc-CCeEEEEecCCcCH
Confidence 23333 355666666666666 33345567776654
No 86
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=64.47 E-value=47 Score=31.46 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=66.4
Q ss_pred chHHHHHHHHHcC--CCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCC---CCcHHHHHhh--
Q 020989 80 KYKEDVKLMADTG--LDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL---DLPQALEDEY-- 152 (319)
Q Consensus 80 ~~~eDi~l~k~lG--~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~---~~P~wl~~~y-- 152 (319)
..++-++.+++.| ++++=+.+.|.+-.-.+.=.+|++.+--.+++|+.|+++|+++++.+.-+ +.|..-+.+-
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 4567788899999 55677777887432111224566566667899999999999998876522 2232211100
Q ss_pred -------------------CC---CCChhhHHHHHHHHHHHHHHhCCCcce-EEecCCC
Q 020989 153 -------------------GG---WINRMIVKDFTAYADVCFREFGDRVSY-WTTVNEP 188 (319)
Q Consensus 153 -------------------gg---~~~~~~~~~F~~ya~~v~~r~gd~V~~-W~t~NEP 188 (319)
++ +.||+..+.|.+..+.+.+ +| |+. |.=+|||
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 01 4677888877776665443 44 444 4557886
No 87
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=64.32 E-value=44 Score=32.40 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=62.7
Q ss_pred hHHHHHHHHHcCCC--eeeecccccccccCCCCCCChhhhHHH--HHHHHHHHHcCCeeeeeecCCCCc--------HHH
Q 020989 81 YKEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYY--NNLINELISYGIQPHVTLHHLDLP--------QAL 148 (319)
Q Consensus 81 ~~eDi~l~k~lG~~--~~R~si~Wsri~P~g~G~~n~~~l~~y--d~~id~l~~~GI~pivtL~H~~~P--------~wl 148 (319)
.++-++.+++.|+. ++=+++.|..-. +.=.+|.+.+.-- +++|+.|+++|+++++.+.-+-.+ .+-
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~~--~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~ 103 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDRR--RDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYD 103 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccCc--cceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHH
Confidence 34555666655554 444555554321 1223344434444 889999999999988887543222 221
Q ss_pred HHh-------------h-----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 149 EDE-------------Y-----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 149 ~~~-------------y-----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
+.. | -.++||+..+.|.+..+.+...+| -.-.|.=+|||..
T Consensus 104 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~Ep~~ 168 (339)
T cd06602 104 RGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP-FDGLWIDMNEPSN 168 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC-CcEEEecCCCCch
Confidence 110 0 125688888887777776666555 2456788999964
No 88
>PRK03705 glycogen debranching enzyme; Provisional
Probab=64.31 E-value=15 Score=39.19 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=36.9
Q ss_pred HHHHHHcCCCeeeecc--c---------------c-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 85 VKLMADTGLDAYRFSI--S---------------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 85 i~l~k~lG~~~~R~si--~---------------W-------sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
|+.+|+||++++=+.= + | -.+.|. -|.-....++=++++|++|.++||++|+++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~-ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA-YASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc-cCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 8999999999997642 1 1 112222 121111235679999999999999999986
No 89
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=63.87 E-value=62 Score=30.30 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCC-CC----cHHHHHhh---
Q 020989 82 KEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL-DL----PQALEDEY--- 152 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~Wsri~P~-g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~-~~----P~wl~~~y--- 152 (319)
+.+++++++.|++.+|+.++=|...-. ..|.-.++.++...+.++.+++.|+++.++.-+| +- |..+.+..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~ 160 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAA 160 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHH
Confidence 368999999999999998764433211 0233335678999999999999999998865554 21 33322110
Q ss_pred -------------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCc
Q 020989 153 -------------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 153 -------------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~ 189 (319)
-|... ++...++.+.+-+++++..--....|-..
T Consensus 161 ~~~g~~~i~l~DT~G~~~---P~~v~~lv~~l~~~~~~~~l~~H~Hnd~G 207 (273)
T cd07941 161 AEAGADWLVLCDTNGGTL---PHEIAEIVKEVRERLPGVPLGIHAHNDSG 207 (273)
T ss_pred HhCCCCEEEEecCCCCCC---HHHHHHHHHHHHHhCCCCeeEEEecCCCC
Confidence 12233 35566666677677765333335555544
No 90
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=63.26 E-value=20 Score=33.47 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCCeeeecccccc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsr-i~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
-+|.++.||++|++.+-++++-+. +.+.-.+.. .++.+.+.++.++++||.+...+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 388999999999999999988221 332211222 36778899999999999866544
No 91
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=62.42 E-value=11 Score=38.82 Aligned_cols=64 Identities=13% Similarity=0.303 Sum_probs=42.2
Q ss_pred ccccchHHHHHHHHHcCCCeeeecccccccc-cCCC-----CCCCh--hhhHHHHHHHHHHHHcCCeeeeee
Q 020989 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLI-PNGR-----GPVNP--KGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 76 ~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~-P~g~-----G~~n~--~~l~~yd~~id~l~~~GI~pivtL 139 (319)
.-+.-..+-++.+++||++++=++=-.+.-. ..|- -.+|+ ...+=++++|+.+.++||++|+++
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4456667779999999999987763221100 0000 01222 134678999999999999999985
No 92
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=62.42 E-value=55 Score=31.33 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCC--eeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC-----CcHHHHHh---
Q 020989 82 KEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD-----LPQALEDE--- 151 (319)
Q Consensus 82 ~eDi~l~k~lG~~--~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~-----~P~wl~~~--- 151 (319)
.+-++.+++.++. ++=+++.|..- .+.=.+|.+.+.-..++|+.|+++|++.++.+.-+- .|...+..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~ 104 (317)
T cd06600 27 VEVVDIMQKEGFPYDVVFLDIHYMDS--YRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKG 104 (317)
T ss_pred HHHHHHHHHcCCCcceEEEChhhhCC--CCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCC
Confidence 4445555555543 45555555431 112234555555567899999999999887765321 12221110
Q ss_pred ---------------------hCCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccc
Q 020989 152 ---------------------YGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (319)
Q Consensus 152 ---------------------ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~ 191 (319)
+-.|+||+.++.|.+..+.+....| -.-.|.=+|||..+
T Consensus 105 ~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~g-vdg~w~D~~Ep~~~ 164 (317)
T cd06600 105 KFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQG-VDGIWLDMNEPSDF 164 (317)
T ss_pred EEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCC-CceEEeeCCCCccH
Confidence 0135788888888887777665555 24467889999743
No 93
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=61.11 E-value=35 Score=34.60 Aligned_cols=93 Identities=11% Similarity=0.004 Sum_probs=60.6
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcH----HHHH---h--
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQ----ALED---E-- 151 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~----wl~~---~-- 151 (319)
.++|++...+.|++.+|+.++-+.+. -..+.|+.++++|+.+.+++..-+-|. .+.+ +
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 35667999999999999998655441 256688999999998877766544452 1111 1
Q ss_pred -h----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 152 -Y----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 152 -y----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
. .|..+| ....+.++.+-++++ ..-...+.|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~l~P---~~v~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 165 EMGADSICIKDMAGILTP---YVAYELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred HcCCCEEEEcCCCCCCCH---HHHHHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 0 355555 455556666666775 3445677777665
No 94
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=61.01 E-value=40 Score=32.75 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=49.5
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 85 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 85 i~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
.+.+|++|.+++.+=+-|. |+++..+|.....+.+++.+.|++.||--++-+..++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 5789999999999998876 564556888889999999999999999999988765543
No 95
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=60.98 E-value=84 Score=30.51 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=63.5
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee--cCCCCcHHHHHh------h
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HHLDLPQALEDE------Y 152 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL--~H~~~P~wl~~~------y 152 (319)
..+|++...+.|++.+|+....+.. +...+.|+.+++.|+++.+.+ .|...|..+.+. +
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~ 155 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESY 155 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhc
Confidence 3689999999999999988754432 235789999999999998877 344445544321 1
Q ss_pred ----------CCCCChhhHHHHHHHHHHHHHHhCCCc-ceEEecCCCcc
Q 020989 153 ----------GGWINRMIVKDFTAYADVCFREFGDRV-SYWTTVNEPNG 190 (319)
Q Consensus 153 ----------gg~~~~~~~~~F~~ya~~v~~r~gd~V-~~W~t~NEP~~ 190 (319)
.|... ++...++.+.+-+++++.+ -.+...|-..+
T Consensus 156 Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 201 (333)
T TIGR03217 156 GADCVYIVDSAGAML---PDDVRDRVRALKAVLKPETQVGFHAHHNLSL 201 (333)
T ss_pred CCCEEEEccCCCCCC---HHHHHHHHHHHHHhCCCCceEEEEeCCCCch
Confidence 23334 4577777777777886432 34466776554
No 96
>PRK14705 glycogen branching enzyme; Provisional
Probab=60.94 E-value=45 Score=38.17 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=58.5
Q ss_pred ccchHHH-HHHHHHcCCCeeeecc--------cccccccCCCCCCCh--hhhHHHHHHHHHHHHcCCeeeeee--cCCCC
Q 020989 78 YHKYKED-VKLMADTGLDAYRFSI--------SWSRLIPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTL--HHLDL 144 (319)
Q Consensus 78 y~~~~eD-i~l~k~lG~~~~R~si--------~Wsri~P~g~G~~n~--~~l~~yd~~id~l~~~GI~pivtL--~H~~~ 144 (319)
|....+. |+.+|+||++++=+.= +|- -.|.+--.++. ...+=++++|+.|.++||.+|+++ .|+..
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~ 842 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPK 842 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3333445 6899999999997542 231 11111000110 123458999999999999999986 36532
Q ss_pred cHHHHHhh----------------CC-------CCChhhHHHHHHHHHHHHHHhC
Q 020989 145 PQALEDEY----------------GG-------WINRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 145 P~wl~~~y----------------gg-------~~~~~~~~~F~~ya~~v~~r~g 176 (319)
=.|....+ .. +.++++.+.+.+=+..-+++|+
T Consensus 843 d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 843 DSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred chhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 22211111 11 2456777788888888888876
No 97
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=60.88 E-value=62 Score=30.97 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=60.8
Q ss_pred hHHHHHHHHHcCC--CeeeecccccccccCC--CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCC---CCcHHHHHh--
Q 020989 81 YKEDVKLMADTGL--DAYRFSISWSRLIPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHL---DLPQALEDE-- 151 (319)
Q Consensus 81 ~~eDi~l~k~lG~--~~~R~si~Wsri~P~g--~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~---~~P~wl~~~-- 151 (319)
.++-++.+++.|+ +++=+.+.|-. ..+ .=.+|.+.+.--+++|+.|+++|+++++.+.-+ +.+.+-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~--~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~ 103 (319)
T cd06591 26 LLDVAKEYRKRGIPLDVIVQDWFYWP--KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEK 103 (319)
T ss_pred HHHHHHHHHHhCCCccEEEEechhhc--CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHC
Confidence 3455566665544 45544444321 111 122455556667899999999999998876422 122211100
Q ss_pred -h--------------------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcccc
Q 020989 152 -Y--------------------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFA 192 (319)
Q Consensus 152 -y--------------------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~ 192 (319)
| -.+.||+..+.|.+..+......| ---.|.=+|||....
T Consensus 104 g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~Ep~~~~ 164 (319)
T cd06591 104 GYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKG-VDAWWLDAAEPEYSV 164 (319)
T ss_pred CEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCC-CcEEEecCCCCCccC
Confidence 0 114677777766555444444444 245668899998653
No 98
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=60.11 E-value=31 Score=32.42 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=47.6
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeec-CCCCc
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH-HLDLP 145 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~-H~~~P 145 (319)
-++|++...+.|++.+++.++=|...-.. -+.--++.++...+.++.++++|+++.+++. .|+.|
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~ 141 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP 141 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC
Confidence 47899999999999999998654432110 2222356788999999999999999988775 34443
No 99
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=59.79 E-value=41 Score=32.66 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=59.3
Q ss_pred HHHHHHHHcC--CCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCC-CCcHHHHH--hhCCCCC
Q 020989 83 EDVKLMADTG--LDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL-DLPQALED--EYGGWIN 157 (319)
Q Consensus 83 eDi~l~k~lG--~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~-~~P~wl~~--~ygg~~~ 157 (319)
+-++.+++.+ ++++=+++.|..-. +.-.+|.+.+.--+++++.|++.|++.++.+.-+ ..-..... .+..|.+
T Consensus 28 ~v~~~~r~~~IP~D~i~lDidy~~~~--~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftn 105 (332)
T cd06601 28 EVVEGYRDNNIPLDGLHVDVDFQDNY--RTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGR 105 (332)
T ss_pred HHHHHHHHcCCCCceEEEcCchhcCC--CceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCC
Confidence 3344444434 34566666654211 1223444444445789999999999988766411 10000000 0124678
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEecCCCccccc
Q 020989 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAM 193 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~ 193 (319)
|+..+.|.+..+.+.+ .| -.-.|.=+|||.+...
T Consensus 106 p~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~ 139 (332)
T cd06601 106 PDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPS 139 (332)
T ss_pred HHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccC
Confidence 8887776665544332 33 2347899999997654
No 100
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=59.25 E-value=45 Score=32.45 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=50.2
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 84 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 84 Di~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
+.+.+|++|.+++.+=+-|. |+++-.+|.....+.+++.+.|++.||--++-+..++.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 46889999999999988876 554556888889999999999999999999988876543
No 101
>PRK09505 malS alpha-amylase; Reviewed
Probab=59.07 E-value=25 Score=37.59 Aligned_cols=66 Identities=17% Similarity=0.302 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccc-----------cC-C-CC-------CCCh--hhhHHHHHHHHHHHHcCCee
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLI-----------PN-G-RG-------PVNP--KGLQYYNNLINELISYGIQP 135 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~-----------P~-g-~G-------~~n~--~~l~~yd~~id~l~~~GI~p 135 (319)
+.-..+-++.+++||++++=++=-...+. |. + .| .+|+ ...+=++++|+++.++||++
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34466678999999999998875443321 10 0 01 1222 23567899999999999999
Q ss_pred eeee--cCCC
Q 020989 136 HVTL--HHLD 143 (319)
Q Consensus 136 ivtL--~H~~ 143 (319)
|+++ .|-.
T Consensus 309 ilD~V~NH~~ 318 (683)
T PRK09505 309 LFDVVMNHTG 318 (683)
T ss_pred EEEECcCCCc
Confidence 9986 4543
No 102
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=58.75 E-value=24 Score=34.34 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=55.6
Q ss_pred hHHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eeecCCCCcHHHHHhhCCCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~-Ws-ri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pi-vtL~H~~~P~wl~~~ygg~~~ 157 (319)
-++.++.|+++|++.+-++++ -+ ++... -|+.. ..+-+.+.|+.+++.|+.++ +++. +++|. .
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------q- 164 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQH--SAKNIAPAIETALKSGIENISLDLM-YGLPL---------Q- 164 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEecc-CCCCC---------C-
Confidence 368899999999997777662 32 23222 23321 25677889999999999754 4544 45663 2
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
+.+.+.+-.+.+.+.=-+++..+...=||++
T Consensus 165 --t~~~~~~~l~~~~~l~~~~is~y~l~~~~gT 195 (360)
T TIGR00539 165 --TLNSLKEELKLAKELPINHLSAYALSVEPNT 195 (360)
T ss_pred --CHHHHHHHHHHHHccCCCEEEeecceEcCCC
Confidence 2345555555544422234555444445554
No 103
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=58.57 E-value=51 Score=32.77 Aligned_cols=52 Identities=12% Similarity=0.323 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
..|++||++++++|++.+=+.|. . ..... .+....+.+.+.+.|.+.++++-
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~-~d~~~---~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------S-SDSWQ---PDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------c-CCccc---HHHHHHHHHHHHhcCCEEEEEec
Confidence 46899999999999999999986 1 12233 45778888999999999888875
No 104
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=58.54 E-value=31 Score=32.09 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=43.3
Q ss_pred HHHHHHHHHcC----CCeeeecccccccc--cCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 82 KEDVKLMADTG----LDAYRFSISWSRLI--PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 82 ~eDi~l~k~lG----~~~~R~si~Wsri~--P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.+|+++..+.| ++.+|+.++-+.+. -. -+.-..+.++...+.++.+++.|+++.++..
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 135 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK-LKKTREEVLERAVEAVEYAKSHGLDVEFSAE 135 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEeee
Confidence 78999999999 99999987655442 22 1222235688888999999999999886654
No 105
>PRK10785 maltodextrin glucosidase; Provisional
Probab=58.51 E-value=17 Score=38.03 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCC-------CCCh--hhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNP--KGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G-------~~n~--~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.-..+-++.+|+|||+++=++=-... |..-| .+|+ -..+=++++|+++.++||++|+++.
T Consensus 179 ~GI~~kLdYL~~LGv~~I~L~Pif~s--~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 179 DGISEKLPYLKKLGVTALYLNPIFTA--PSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccC--CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44566789999999999987632111 11001 1121 1345689999999999999999863
No 106
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=58.02 E-value=21 Score=38.24 Aligned_cols=62 Identities=19% Similarity=0.383 Sum_probs=41.5
Q ss_pred ccchHHH--HHHHHHcCCCeeee----cccccccccC-CC---------------CCC--Ch---hhhHHHHHHHHHHHH
Q 020989 78 YHKYKED--VKLMADTGLDAYRF----SISWSRLIPN-GR---------------GPV--NP---KGLQYYNNLINELIS 130 (319)
Q Consensus 78 y~~~~eD--i~l~k~lG~~~~R~----si~Wsri~P~-g~---------------G~~--n~---~~l~~yd~~id~l~~ 130 (319)
|--..+- |+.+|+||++++.+ ++.+.+-..+ +. |.+ +. ..+.=++++|++|.+
T Consensus 197 y~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHk 276 (697)
T COG1523 197 YLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHK 276 (697)
T ss_pred eehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHH
Confidence 4434444 99999999999984 2333332221 00 111 22 247789999999999
Q ss_pred cCCeeeeee
Q 020989 131 YGIQPHVTL 139 (319)
Q Consensus 131 ~GI~pivtL 139 (319)
+||++|+++
T Consensus 277 aGI~VILDV 285 (697)
T COG1523 277 AGIEVILDV 285 (697)
T ss_pred cCCEEEEEE
Confidence 999999986
No 107
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=57.99 E-value=31 Score=34.82 Aligned_cols=59 Identities=25% Similarity=0.423 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCeeeecc-cccc-cccC-CCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 82 KEDVKLMADTGLDAYRFSI-SWSR-LIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si-~Wsr-i~P~-g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
++.+++|+++|++.+-+++ +-+. +.-. ++| .+ .+.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 5678999999999888888 3332 2111 122 23 55678999999999999888775 2445
No 108
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=57.79 E-value=17 Score=37.73 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHHcCCCeeeeccc--------c-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 76 DEYHKYKEDVKLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 76 ~~y~~~~eDi~l~k~lG~~~~R~si~--------W-------sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
..+.-..+-++.+|+||++++-+.=- | -.+.|. -| ..+=++++|+.|.++||++|+++
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G-----~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YG-----GPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cC-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 34566677789999999999976521 1 111111 12 24568999999999999999986
No 109
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=56.85 E-value=30 Score=38.06 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=42.5
Q ss_pred ccchHHHHHHHHHcCCCeeeeccc---------------ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSIS---------------WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~---------------Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
+....+-+..+++||++++=+|=- +.+|.|. -| +.+-++++++.++++||++|+++
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~-lG-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE-LG-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 456788899999999999876643 2333333 22 34568999999999999999986
No 110
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=56.77 E-value=39 Score=34.51 Aligned_cols=93 Identities=16% Similarity=0.316 Sum_probs=57.1
Q ss_pred eehhhhhhhhhcCCCCCCCCCCccceecccc-CCCCCC----CCcCCc--cccchHHH-----HHHHHHcCCCeeeeccc
Q 020989 34 IFGSGTSAYQVEGAANEDGRTPSIWDTFAHA-GNVPGT----GDVACD--EYHKYKED-----VKLMADTGLDAYRFSIS 101 (319)
Q Consensus 34 lwG~atsa~Q~EG~~~~~g~~~s~wd~~~~~-~~~~~~----~~~a~~--~y~~~~eD-----i~l~k~lG~~~~R~si~ 101 (319)
.||.|| +++--.+ -.++.|+..... ...+.+ --.+.+ -|..|.+| +++.++.|++.+|+.-.
T Consensus 54 ~wGGAt--fd~~~rf----l~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~ 127 (468)
T PRK12581 54 CWGGAT--FDACIRF----LNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDA 127 (468)
T ss_pred ecCCcc--hhhhhcc----cCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEccc
Confidence 676665 7764443 235668775432 111100 001222 47788889 89999999999998753
Q ss_pred ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 102 WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 102 Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
.. | ++-....|+.+++.|....+++.+=+.|
T Consensus 128 ln----------d---~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 128 LN----------D---PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CC----------C---HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 22 1 4455677788888888877777665555
No 111
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=56.53 E-value=51 Score=32.00 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eeecCCCCcHHHHHhhCCCCCh
Q 020989 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWINR 158 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si-~Ws-ri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pi-vtL~H~~~P~wl~~~ygg~~~~ 158 (319)
++.++.++++|++.+-+++ +-+ .+... -|+.. ..+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~-lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF-LGRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 6889999999999777777 433 22222 24322 14567889999999999855 6665 46662
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 159 MIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 159 ~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
++.+.|.+-.+.+.+.=-++|..+...=||+.
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 23455655555554422345555554445554
No 112
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=56.01 E-value=72 Score=30.80 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=63.8
Q ss_pred hHHHHHHHHHcCCC--eeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCC-----cHHHHHh--
Q 020989 81 YKEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDL-----PQALEDE-- 151 (319)
Q Consensus 81 ~~eDi~l~k~lG~~--~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~-----P~wl~~~-- 151 (319)
..+-++.+++.|+. ++=+++.|..- .+.=.+|++.+.--+++|+.|+++|++.++.++-+-. |..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~ 103 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTDG--KRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDK 103 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhCC--CCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHC
Confidence 34455666655554 44444444321 0011234444444578899999999998888764422 2221111
Q ss_pred ----------------------hCCCCChhhHHHHHHHHHHHHHHhC-CCcceEEecCCCcccc
Q 020989 152 ----------------------YGGWINRMIVKDFTAYADVCFREFG-DRVSYWTTVNEPNGFA 192 (319)
Q Consensus 152 ----------------------ygg~~~~~~~~~F~~ya~~v~~r~g-d~V~~W~t~NEP~~~~ 192 (319)
+-.+.||+.++.|.+..+.+....+ +-.-.|.=+|||.++.
T Consensus 104 g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 104 GYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred CeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 0125788888888888777655432 2356789999998753
No 113
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.34 E-value=85 Score=30.01 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=64.6
Q ss_pred hHHHHHHHHHcCC--CeeeecccccccccC--CCC--CCChhhhHHHHHHHHHHHHcCCeeeeeecCC---CCcHHHHHh
Q 020989 81 YKEDVKLMADTGL--DAYRFSISWSRLIPN--GRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHL---DLPQALEDE 151 (319)
Q Consensus 81 ~~eDi~l~k~lG~--~~~R~si~Wsri~P~--g~G--~~n~~~l~~yd~~id~l~~~GI~pivtL~H~---~~P~wl~~~ 151 (319)
..+-++.+++.|+ +++=+++.|...... ..| .+|.+.+.--+++|+.|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 3455666666665 466666677543321 012 2455555556889999999999999887643 333321110
Q ss_pred ---h-------------------C---CCCChhhHHHHHHHHHHHHHHhCCCcc-eEEecCCCccc
Q 020989 152 ---Y-------------------G---GWINRMIVKDFTAYADVCFREFGDRVS-YWTTVNEPNGF 191 (319)
Q Consensus 152 ---y-------------------g---g~~~~~~~~~F~~ya~~v~~r~gd~V~-~W~t~NEP~~~ 191 (319)
| + .++||+..+.|.+..+.+ ...| |+ .|.=+|||...
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G--vdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG--VTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC--ccEEEecCCCcccc
Confidence 0 0 246888887777766654 3333 44 46889999754
No 114
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=54.80 E-value=22 Score=38.52 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=57.4
Q ss_pred cccchHH-HHHHHHHcCCCeeeeccccccc-------ccCCCCCCC--hhhhHHHHHHHHHHHHcCCeeeeeec--CCCC
Q 020989 77 EYHKYKE-DVKLMADTGLDAYRFSISWSRL-------IPNGRGPVN--PKGLQYYNNLINELISYGIQPHVTLH--HLDL 144 (319)
Q Consensus 77 ~y~~~~e-Di~l~k~lG~~~~R~si~Wsri-------~P~g~G~~n--~~~l~~yd~~id~l~~~GI~pivtL~--H~~~ 144 (319)
.|..+.+ -++.+|+||++++-+.=-...- .|..--.++ -...+-++++|+.|.++||++|+++. |+.-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 3444333 4899999999999876322211 000000011 01134589999999999999999874 4321
Q ss_pred -------------cHHHHHhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 020989 145 -------------PQALEDEYGG----W-------INRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 145 -------------P~wl~~~ygg----~-------~~~~~~~~F~~ya~~v~~r~g 176 (319)
+.|+.....| | .++++.+.+.+-++.-+++|+
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222211011 2 245667777777777777775
No 115
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=54.63 E-value=39 Score=39.82 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccC--C-----CCCCChh--hhHHHHHHHHHHHHcCCeeeeee--cCCC
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPN--G-----RGPVNPK--GLQYYNNLINELISYGIQPHVTL--HHLD 143 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~--g-----~G~~n~~--~l~~yd~~id~l~~~GI~pivtL--~H~~ 143 (319)
+....+-++.+++||++++=+|=-+.-.--+ | ...+|++ +.+-++++++.++++||++|+++ .|..
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 4557777899999999999776544311000 0 0112221 35568999999999999999987 4653
No 116
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=54.01 E-value=73 Score=31.41 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=54.1
Q ss_pred HcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHH
Q 020989 90 DTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYAD 169 (319)
Q Consensus 90 ~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~ 169 (319)
+.|++.+|+ - +|.+... -+..+++++.++++|+..=+...|-.++.-+.++||+-+.+..++.-.++++
T Consensus 99 ~~G~~~iRI-------N---PGNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~ 167 (360)
T PRK00366 99 EAGADALRI-------N---PGNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAK 167 (360)
T ss_pred HhCCCEEEE-------C---CCCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 569999964 3 5555321 2578999999999999999999999999999999865444556666666666
Q ss_pred HH
Q 020989 170 VC 171 (319)
Q Consensus 170 ~v 171 (319)
.+
T Consensus 168 ~l 169 (360)
T PRK00366 168 IL 169 (360)
T ss_pred HH
Confidence 54
No 117
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=53.91 E-value=21 Score=40.83 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=41.0
Q ss_pred ccccchH--HHHHHHHHcCCCeeeecccccccc-----cCC-----------CCCCCh----hhhHHHHHHHHHHHHcCC
Q 020989 76 DEYHKYK--EDVKLMADTGLDAYRFSISWSRLI-----PNG-----------RGPVNP----KGLQYYNNLINELISYGI 133 (319)
Q Consensus 76 ~~y~~~~--eDi~l~k~lG~~~~R~si~Wsri~-----P~g-----------~G~~n~----~~l~~yd~~id~l~~~GI 133 (319)
..|.... +.|+.+|+||++++=+.=-..... +.| --.+|. ...+=++++|+.|.++||
T Consensus 182 Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI 261 (1221)
T PRK14510 182 GTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGI 261 (1221)
T ss_pred cHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCC
Confidence 3455555 668899999999997653211110 000 001111 135668999999999999
Q ss_pred eeeeee
Q 020989 134 QPHVTL 139 (319)
Q Consensus 134 ~pivtL 139 (319)
++|+++
T Consensus 262 ~VILDv 267 (1221)
T PRK14510 262 AVILDV 267 (1221)
T ss_pred EEEEEE
Confidence 999985
No 118
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=52.54 E-value=67 Score=31.85 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=64.0
Q ss_pred hHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eeeeecCCCCcHHHHHhhCCCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si-~Ws-ri~P~g~G~~n~~~l~~yd~~id~l~~~GI~-pivtL~H~~~P~wl~~~ygg~~~ 157 (319)
-++.++.++++|++.+-+++ +-+ ++... -|+.. ..+-..+.++.+++.|+. +-++|. +++|. .
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~-l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------q- 179 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLAL-CGRSH--RVKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------Q- 179 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C-
Confidence 36789999999999777766 222 12211 12221 134567888999999998 556776 46662 2
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEecCCCccccccccccCCC
Q 020989 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAMVGYDFGIA 201 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~~gy~~g~~ 201 (319)
+.+.+.+=.+.+.+-=-++|..+...-||++.....+..|.+
T Consensus 180 --t~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 180 --TLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred --CHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 234555544444443346788787778888765444444443
No 119
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=52.39 E-value=57 Score=31.72 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecC--CCCcHHHHHh------h-
Q 020989 82 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH--LDLPQALEDE------Y- 152 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H--~~~P~wl~~~------y- 152 (319)
.+|++...+.|++.+|+....++. +--.+.|+.+++.|+++.+++.. -..|..+.+. +
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~G 157 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYG 157 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCC
Confidence 589999999999999998755443 23588999999999999988753 2234333321 1
Q ss_pred ---------CCCCChhhHHHHHHHHHHHHHHhCCC-cceEEecCCCcc
Q 020989 153 ---------GGWINRMIVKDFTAYADVCFREFGDR-VSYWTTVNEPNG 190 (319)
Q Consensus 153 ---------gg~~~~~~~~~F~~ya~~v~~r~gd~-V~~W~t~NEP~~ 190 (319)
.|... ++...++.+.+-+++++. --.+...|-..+
T Consensus 158 a~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 202 (337)
T PRK08195 158 AQCVYVVDSAGALL---PEDVRDRVRALRAALKPDTQVGFHGHNNLGL 202 (337)
T ss_pred CCEEEeCCCCCCCC---HHHHHHHHHHHHHhcCCCCeEEEEeCCCcch
Confidence 23333 456777777777777533 334566776554
No 120
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=52.39 E-value=81 Score=30.77 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=58.3
Q ss_pred hHHHHHHHHHcCCCeeeecc-cccc-cccCCCCCCChhhhHHHHHHHHHHHHcCCe-eeeeecCCCCcHHHHHhhCCCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si-~Wsr-i~P~g~G~~n~~~l~~yd~~id~l~~~GI~-pivtL~H~~~P~wl~~~ygg~~~ 157 (319)
-++.+++|+++|++.+-+++ +-+. +.-. -|+.. ..+...+.++.+++.|+. +.+++. +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAV-LDRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 46789999999999777776 3221 2211 12221 245677889999999998 656664 35552
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEecCCCccccc
Q 020989 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAM 193 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~ 193 (319)
++.+.|.+=.+.+.+.=-+++..+...-||+....
T Consensus 172 -qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~ 206 (375)
T PRK05628 172 -ESDDDWRASLDAALEAGVDHVSAYALIVEDGTALA 206 (375)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHH
Confidence 12355555555544332355666655557766543
No 121
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=52.23 E-value=59 Score=34.17 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=61.2
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc----HHHHHh-----
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP----QALEDE----- 151 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P----~wl~~~----- 151 (319)
.++|+++.++.|++.+|+..+.+.+ +-....|+.++++|+.+.+++..-..| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 3556899999999999999765543 235677788888998888876654455 111110
Q ss_pred -h----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 152 -Y----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 152 -y----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
. .|...| ....+..+.+-++++ ..-...+.|-..+
T Consensus 160 ~~Gad~I~i~Dt~G~~~P---~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTP---KAAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HcCCCEEEECCCCCCcCH---HHHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 0 344555 456666666667775 3345778887765
No 122
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=51.89 E-value=65 Score=32.38 Aligned_cols=90 Identities=13% Similarity=0.276 Sum_probs=57.2
Q ss_pred chHHHHHHHHHcCCCeeeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eeecCCCCcHH--HHHhhCC
Q 020989 80 KYKEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQA--LEDEYGG 154 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si--~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pi-vtL~H~~~P~w--l~~~ygg 154 (319)
...+|++.+.++.--.-|+++ .|.. +|.+.++ +.++++||+.- +...-|..|.- -.-++|.
T Consensus 71 E~i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GS 136 (412)
T TIGR02629 71 DKLEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGS 136 (412)
T ss_pred HHHHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccc
Confidence 347788888888777777775 7722 3544444 88999999988 76666766732 0113366
Q ss_pred CCChh--hHHHHHHHHHHH---HHHhCCC-cceEE
Q 020989 155 WINRM--IVKDFTAYADVC---FREFGDR-VSYWT 183 (319)
Q Consensus 155 ~~~~~--~~~~F~~ya~~v---~~r~gd~-V~~W~ 183 (319)
..||+ +.+...+-+..| .+..|.+ |+.|+
T Consensus 137 LtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 137 LSHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 76654 556666665554 5677764 45554
No 123
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=51.53 E-value=56 Score=32.71 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eeecCCCCc
Q 020989 81 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLP 145 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si-~Ws-ri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pi-vtL~H~~~P 145 (319)
-++.+++|+++|++.+.+++ +=+ ++... -|+-. ..+-..+.|+.+++.|+..+ ++|. +++|
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHA-LHRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 36789999999999777777 321 22212 12221 24567889999999999864 5554 4666
No 124
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=51.22 E-value=38 Score=32.04 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=47.1
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
--++|++...+.|++.+-+.++=|...-.. -+.=-++.++.+.++++.++++|+++-+++
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 357999999999999999887655443221 233346789999999999999999998888
No 125
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=50.82 E-value=30 Score=33.81 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=42.6
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHH
Q 020989 85 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALE 149 (319)
Q Consensus 85 i~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~ 149 (319)
|++|.+.|++.+=.|+. .|++ .+...++.++++++.+.+.|+++|++.. |.-|.
T Consensus 22 i~~~~~~Gf~~IFtsl~----~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~ 75 (360)
T COG3589 22 IDRMHKYGFKRIFTSLL----IPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILK 75 (360)
T ss_pred HHHHHHcCccceeeecc----cCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHh
Confidence 67888999988877763 4442 2346799999999999999999999985 66554
No 126
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=49.80 E-value=42 Score=30.95 Aligned_cols=75 Identities=17% Similarity=0.389 Sum_probs=51.1
Q ss_pred ccchHHHHHHHHHcCCCeeee----------------------cccccccccCCCCCCChhhhHHHHHHHHHHHHcCCee
Q 020989 78 YHKYKEDVKLMADTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 135 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~----------------------si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~p 135 (319)
--.-+.-|+++|+||.+++.| ++ | +||. |-+| ++.+.+++.-+++.|++-
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT--GGId---l~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT--GGID---LDNFEEIVQIALDAGVEK 205 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC--CCcc---HHhHHHHHHHHHHcCCCe
Confidence 345677899999999998875 33 3 5777 5678 788999999999999987
Q ss_pred eeeecCCCCcHHHHHhhCCCCChhhHHHH
Q 020989 136 HVTLHHLDLPQALEDEYGGWINRMIVKDF 164 (319)
Q Consensus 136 ivtL~H~~~P~wl~~~ygg~~~~~~~~~F 164 (319)
++ .|- +. -+.|+-.|-++++-+...
T Consensus 206 vi--PHI-Ys-siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 206 VI--PHV-YS-SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred ec--ccc-ce-eccccccCCCCHHHHHHH
Confidence 63 221 01 122344677776644443
No 127
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=49.75 E-value=80 Score=30.78 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=57.1
Q ss_pred hHHHHHHHHHcCCCeeeecc-cc-cccccCCCCC-CChhhhHHHHHHHHHHHHcCCeee-eeecCCCCcHHHHHhhCCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGP-VNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWI 156 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si-~W-sri~P~g~G~-~n~~~l~~yd~~id~l~~~GI~pi-vtL~H~~~P~wl~~~ygg~~ 156 (319)
-++.+++|+++|++.+-+++ += +++... -|+ .+ .+-..+.|+.+++.|+..+ +.+. +++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~-l~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKK-IGRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------C
Confidence 36889999999999777777 22 233322 222 23 5677889999999999743 4443 45663 2
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccccc
Q 020989 157 NRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAM 193 (319)
Q Consensus 157 ~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~ 193 (319)
+ .+.+.+=.+.+.+.=-+.+..+...-+|.....
T Consensus 165 t---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~ 198 (377)
T PRK08599 165 T---IEDFKESLAKALALDIPHYSAYSLILEPKTVFY 198 (377)
T ss_pred C---HHHHHHHHHHHHccCCCEEeeeceeecCCChhH
Confidence 2 345555555543322234555555567765543
No 128
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=49.64 E-value=21 Score=35.56 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCeeeecc------cccccccCCCCCCC--hhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 82 KEDVKLMADTGLDAYRFSI------SWSRLIPNGRGPVN--PKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si------~Wsri~P~g~G~~n--~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
.+-++.+++||++++=++= ++.+--...--.+| ...++-.+++|+.+.++||++++++
T Consensus 32 ~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 32 TEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4668899999999985442 11111111001122 2346788999999999999999987
No 129
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.86 E-value=1.4e+02 Score=28.62 Aligned_cols=109 Identities=12% Similarity=0.054 Sum_probs=60.7
Q ss_pred hHHHHHHHHHcCCC--eeeecccccccccCC--CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC---CcHHHHHhh-
Q 020989 81 YKEDVKLMADTGLD--AYRFSISWSRLIPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD---LPQALEDEY- 152 (319)
Q Consensus 81 ~~eDi~l~k~lG~~--~~R~si~Wsri~P~g--~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~---~P~wl~~~y- 152 (319)
..+-++.+++.|+. ++=+.+.|....-.. .-.+|.+.+.-.+++|+.|+++|++.++.+.-+- .|..-+.+-
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 34455666666654 444444555431110 1134444455567899999999999988765332 222111100
Q ss_pred ------------------------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 153 ------------------------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 153 ------------------------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
-.++||+..+.|.+..+......| -.-.|+=+|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 013677777777766655454444 2345678999974
No 130
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=48.67 E-value=1.8e+02 Score=27.26 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=64.6
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCCh
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINR 158 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~ 158 (319)
.+..+-++.+|+.|.. ++..++.+--.|. .+..+ .+++.++++.+.+.|..-+ .|. |- .|...|
T Consensus 114 ~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~-~~~~~---~~~~~~~~~~~~~~Ga~~i-~l~---------DT-~G~~~P 177 (274)
T cd07938 114 ERFEPVAELAKAAGLR-VRGYVSTAFGCPY-EGEVP---PERVAEVAERLLDLGCDEI-SLG---------DT-IGVATP 177 (274)
T ss_pred HHHHHHHHHHHHCCCe-EEEEEEeEecCCC-CCCCC---HHHHHHHHHHHHHcCCCEE-EEC---------CC-CCccCH
Confidence 3445558889999984 7777777665666 56676 7789999999999998643 332 22 455554
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 159 MIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 159 ~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
....++.+.+.+++++..-.+...|-..+
T Consensus 178 ---~~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl 206 (274)
T cd07938 178 ---AQVRRLLEAVLERFPDEKLALHFHDTRGQ 206 (274)
T ss_pred ---HHHHHHHHHHHHHCCCCeEEEEECCCCCh
Confidence 56777777777888764445677776654
No 131
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=48.29 E-value=54 Score=30.07 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=41.8
Q ss_pred cccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 020989 99 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 99 si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~g 176 (319)
.+.|..+.++|.-.... ....+..+++.++++|+++++.+..+....... -..++...+.|++=+-..+++|+
T Consensus 27 ~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 34555665553222211 123567889999999999999987655432111 12355556666555555556654
No 132
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=48.25 E-value=30 Score=37.81 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccC--C-----CCCCCh--hhhHHHHHHHHHHHHcCCeeeeee--cCCC
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPN--G-----RGPVNP--KGLQYYNNLINELISYGIQPHVTL--HHLD 143 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~--g-----~G~~n~--~~l~~yd~~id~l~~~GI~pivtL--~H~~ 143 (319)
+....+-++.+++||++++=+|=-+.-.-.+ | ...+|+ .+.+-++++++.++++||.+|+++ .|..
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4557888999999999999776543211000 0 011222 135668999999999999999986 4543
No 133
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=47.81 E-value=52 Score=32.29 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=57.4
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccC------CCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHh
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPN------GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDE 151 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~------g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ 151 (319)
+-.-++=++.+.++|++.+-+|++ .+-|. |...+| +++-.++.+.+.+.||.++++ |.|+
T Consensus 200 ~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~l--- 265 (414)
T COG2100 200 VLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWL--- 265 (414)
T ss_pred eeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeec---
Confidence 334456688899999998888873 23332 223566 788899999999999998874 7787
Q ss_pred hCCCCChhhHHHHHHHHHHHH
Q 020989 152 YGGWINRMIVKDFTAYADVCF 172 (319)
Q Consensus 152 ygg~~~~~~~~~F~~ya~~v~ 172 (319)
.| .|.+-...+.+||+.+-
T Consensus 266 -PG-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 -PG-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred -CC-cChHHHHHHHHHHHHhC
Confidence 34 45555778888888764
No 134
>PRK09936 hypothetical protein; Provisional
Probab=47.64 E-value=2e+02 Score=27.67 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCCh
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINR 158 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~ 158 (319)
..|++=++.++.+|++.+ =+.|++.--+.-|.-+ .++-+.++.+.+.||+++|.|+ +| |.|....- .++
T Consensus 38 ~qWq~~~~~~~~~G~~tL--ivQWt~yG~~~fg~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~~~---~d~ 106 (296)
T PRK09936 38 TQWQGLWSQLRLQGFDTL--VVQWTRYGDADFGGQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMHQK---QDG 106 (296)
T ss_pred HHHHHHHHHHHHcCCcEE--EEEeeeccCCCcccch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHHHh---cCc
Confidence 346666888999999986 3589888211112222 4789999999999999999998 45 66654331 232
Q ss_pred hhHH-HHHHHHHHH-------HHHhCCCcceEEecCCCc
Q 020989 159 MIVK-DFTAYADVC-------FREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 159 ~~~~-~F~~ya~~v-------~~r~gd~V~~W~t~NEP~ 189 (319)
...+ .+.+....+ .++.+-.|+.|-+-=|+.
T Consensus 107 ~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElD 145 (296)
T PRK09936 107 AALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELD 145 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccc
Confidence 2222 222233333 344444556665555544
No 135
>PRK12568 glycogen branching enzyme; Provisional
Probab=47.10 E-value=29 Score=37.44 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=57.6
Q ss_pred cccchHHH-HHHHHHcCCCeeeecc--------cccccccCCCCCCC--hhhhHHHHHHHHHHHHcCCeeeeeec--CCC
Q 020989 77 EYHKYKED-VKLMADTGLDAYRFSI--------SWSRLIPNGRGPVN--PKGLQYYNNLINELISYGIQPHVTLH--HLD 143 (319)
Q Consensus 77 ~y~~~~eD-i~l~k~lG~~~~R~si--------~Wsri~P~g~G~~n--~~~l~~yd~~id~l~~~GI~pivtL~--H~~ 143 (319)
.|....+. |+.+|+||++++=+.= +|- -.|.+-=.++ -...+-++++|+.|.++||++|+++. |+.
T Consensus 267 ~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 267 DWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 34455555 6999999999986542 231 1111100011 11245689999999999999999863 543
Q ss_pred CcH---------HHHH----h---hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 020989 144 LPQ---------ALED----E---YGG-------WINRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 144 ~P~---------wl~~----~---ygg-------~~~~~~~~~F~~ya~~v~~r~g 176 (319)
--. .+.. + +.. +.++++.+.+.+=++.-+++|+
T Consensus 346 ~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 346 DDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 210 0000 0 012 2356777777777777777775
No 136
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=46.59 E-value=1.7e+02 Score=28.83 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=54.1
Q ss_pred HHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHH
Q 020989 89 ADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYA 168 (319)
Q Consensus 89 k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya 168 (319)
.+.|+..+|+ - +|.+-.+ +...++++.++++|+-.=+...|-.+..-+.++|++-+.+..++--..++
T Consensus 92 ~~~g~~k~RI-------N---PGNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a 159 (361)
T COG0821 92 AECGVDKVRI-------N---PGNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHA 159 (361)
T ss_pred hhcCcceEEE-------C---CcccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4567888875 2 4555332 37899999999999999999999999999999998766555666555566
Q ss_pred HHH
Q 020989 169 DVC 171 (319)
Q Consensus 169 ~~v 171 (319)
+.+
T Consensus 160 ~~~ 162 (361)
T COG0821 160 ELL 162 (361)
T ss_pred HHH
Confidence 554
No 137
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=46.45 E-value=60 Score=29.23 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=61.9
Q ss_pred HHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC--CcHHHHHh------h----
Q 020989 86 KLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD--LPQALEDE------Y---- 152 (319)
Q Consensus 86 ~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~--~P~wl~~~------y---- 152 (319)
+.+++.|++.+|+.++=+...... -+.--++.++...+.++.+++.|+++.+++-+.+ .|..+.+- .
T Consensus 74 ~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 153 (237)
T PF00682_consen 74 EAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADI 153 (237)
T ss_dssp HHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SE
T ss_pred HhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeE
Confidence 344579999999998655432221 2333356788999999999999999988886532 22222211 0
Q ss_pred ------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 153 ------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 153 ------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
-|...| +...++.+.+-+++++..-.+...|-..+
T Consensus 154 i~l~Dt~G~~~P---~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 154 IYLADTVGIMTP---EDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEEEETTS-S-H---HHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred EEeeCccCCcCH---HHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 233333 45666666666777665555566665443
No 138
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=46.41 E-value=70 Score=29.17 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 020989 118 LQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 118 l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~g 176 (319)
.+...+.|..++++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4566788999999999999999754432111 012444455666665555567776
No 139
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=45.67 E-value=80 Score=31.80 Aligned_cols=77 Identities=10% Similarity=0.245 Sum_probs=47.1
Q ss_pred hHHHHHHHHHcCCCeeeeccc-ccc-cccCCCCCCChhhhHHHHHHHHHHHHcCC-eeeeeecCCCCcHHHHHhhCCCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSIS-WSR-LIPNGRGPVNPKGLQYYNNLINELISYGI-QPHVTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~-Wsr-i~P~g~G~~n~~~l~~yd~~id~l~~~GI-~pivtL~H~~~P~wl~~~ygg~~~ 157 (319)
-++.+++|+++|++.+.+++. =+. +.-. -|.. ...+-..+.|+.+++.|+ .+.++|. +++|. .
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~-l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------q- 215 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKA-VNRI--QPFEFTFALVEAARELGFTSINIDLI-YGLPK---------Q- 215 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE-ccCCC---------C-
Confidence 468899999999997777772 221 1111 1222 125567788999999999 4555554 45552 2
Q ss_pred hhhHHHHHHHHHHHHH
Q 020989 158 RMIVKDFTAYADVCFR 173 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~ 173 (319)
+.+.+.+-.+.+.+
T Consensus 216 --t~e~~~~~l~~~~~ 229 (453)
T PRK09249 216 --TPESFARTLEKVLE 229 (453)
T ss_pred --CHHHHHHHHHHHHh
Confidence 23455555555544
No 140
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=45.16 E-value=1.7e+02 Score=25.37 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCcce
Q 020989 159 MIVKDFTAYADVCFREFGDRVSY 181 (319)
Q Consensus 159 ~~~~~F~~ya~~v~~r~gd~V~~ 181 (319)
...+....|++.|-++.|.++-.
T Consensus 100 ~~~~~~~~f~~~v~~~~G~~~~i 122 (184)
T cd06525 100 ELNDYVLRFIEEFEKLSGLKVGI 122 (184)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEE
Confidence 34466667777776666655433
No 141
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=44.21 E-value=1.5e+02 Score=24.96 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=39.0
Q ss_pred chHHHHHHHHHcCCCeeeeccc-ccc-cccCCCCCCChhhhHHHHHHHHHHHHcC-Ceeeeee
Q 020989 80 KYKEDVKLMADTGLDAYRFSIS-WSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTL 139 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~-Wsr-i~P~g~G~~n~~~l~~yd~~id~l~~~G-I~pivtL 139 (319)
.-++.++.|++.|++.+.+|+. ++. +...-..... ++.+.+.|+.++++| +.+-+.+
T Consensus 98 ~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 98 LTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 3477899999999999999985 543 2111011122 578899999999999 6555444
No 142
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=43.45 E-value=20 Score=26.38 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=30.7
Q ss_pred cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecC
Q 020989 103 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 141 (319)
Q Consensus 103 sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H 141 (319)
+++.|. +|.--.++++..-+++..|.++|| +++.|++
T Consensus 19 s~l~p~-~~~d~~kaldiCaeIL~cLE~R~i-sWl~LFq 55 (64)
T PF03511_consen 19 SYLAPK-EGADSLKALDICAEILGCLEKRKI-SWLVLFQ 55 (64)
T ss_pred HhcCcc-cccccHHHHHHHHHHHHHHHhCCC-cHHHhhh
Confidence 567888 555566889999999999999999 8887765
No 143
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=43.32 E-value=56 Score=31.11 Aligned_cols=73 Identities=14% Similarity=0.052 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccccccccc
Q 020989 118 LQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAMVGYD 197 (319)
Q Consensus 118 l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~~gy~ 197 (319)
++-+.+.++.++++||++.+.+. +++|. +..+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45678899999999999887765 35552 234667676766655444678888888888876655565
Q ss_pred cCCCCC
Q 020989 198 FGIAPP 203 (319)
Q Consensus 198 ~g~~~P 203 (319)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 565543
No 144
>PLN02960 alpha-amylase
Probab=42.96 E-value=46 Score=36.70 Aligned_cols=96 Identities=10% Similarity=0.187 Sum_probs=59.7
Q ss_pred CccccchHHH-HHHHHHcCCCeeeeccc--------cc-------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeee
Q 020989 75 CDEYHKYKED-VKLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 138 (319)
Q Consensus 75 ~~~y~~~~eD-i~l~k~lG~~~~R~si~--------Ws-------ri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivt 138 (319)
...|....+. ++.+|+||++++=+.=- |- .+.|. -| ..+=++.+|+.|.++||++|++
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~-yG-----tp~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR-FG-----TPDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc-cC-----CHHHHHHHHHHHHHCCCEEEEE
Confidence 3456666555 89999999999886521 11 11111 12 1345899999999999999999
Q ss_pred e--cCCCC--c--HHHHHh-------------hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 020989 139 L--HHLDL--P--QALEDE-------------YGGW-------INRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 139 L--~H~~~--P--~wl~~~-------------ygg~-------~~~~~~~~F~~ya~~v~~r~g 176 (319)
+ .|+.. + .+..+. +..| .++++.+.+.+-++.-++.|+
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 7 35432 1 111010 0112 346677788888888888886
No 145
>PLN02389 biotin synthase
Probab=42.93 E-value=72 Score=31.62 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=42.9
Q ss_pred chHHHHHHHHHcCCCeeeecccccc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsr-i~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.-+|.++.||++|++.|-.+++=++ +.|.-... ..++..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~---~s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITT---RSYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCC---CCHHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999998885222 44441111 1377788999999999999877654
No 146
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=42.86 E-value=1.2e+02 Score=29.45 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 84 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 84 Di~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
+.+.+|++|.+++.+=+-|. |+++-.+|.....+.+++.+.|++.||--++-+..++.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 36889999999999988765 343446888889999999999999999999998876544
No 147
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=42.80 E-value=87 Score=34.11 Aligned_cols=101 Identities=24% Similarity=0.358 Sum_probs=64.8
Q ss_pred HcCCCeeeeccc-ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecC---CCCcHHHHHh---h----------
Q 020989 90 DTGLDAYRFSIS-WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---LDLPQALEDE---Y---------- 152 (319)
Q Consensus 90 ~lG~~~~R~si~-Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H---~~~P~wl~~~---y---------- 152 (319)
++-++++++++. |.+ .-+.=.+|+.-+---+++|+.|++.||+.++.+.. -+.|.--+.. |
T Consensus 293 ~IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 293 DIPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred cCcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 456789999995 876 12123456555666679999999999999988752 2333321111 0
Q ss_pred -----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccccc
Q 020989 153 -----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAM 193 (319)
Q Consensus 153 -----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~ 193 (319)
-.++||+.++.|.+....-...+| -.-+|.=+|||.....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~ 421 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDG 421 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCccccc
Confidence 125788888888763333333444 3567889999998753
No 148
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=42.65 E-value=1.1e+02 Score=29.83 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCe-eeeeecCCCCcHHHHHhhCCCCC
Q 020989 82 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~Wsri~P~g---~G~~n~~~l~~yd~~id~l~~~GI~-pivtL~H~~~P~wl~~~ygg~~~ 157 (319)
++.++.++++|++.+-+++. .+.++- -|+.. ..+-..+.|+.+++.|+. +-++|. +++|.
T Consensus 103 ~~~l~~l~~~G~nrislGvQ--S~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg----------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQ--TFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT----------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEccc--cCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 67899999999996666652 222220 12221 144567788999999997 456665 46662
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEecCCCcccc
Q 020989 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFA 192 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~ 192 (319)
++.+.|.+-.+.+.+.=-++|..+...-||+...
T Consensus 167 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 167 -QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSF 200 (370)
T ss_pred -CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChH
Confidence 2356677777776654346788888888888643
No 149
>PRK12677 xylose isomerase; Provisional
Probab=42.33 E-value=1.7e+02 Score=28.99 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=53.4
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eeecCCCCcHHHHHhhCCCCCh
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWINR 158 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pi-vtL~H~~~P~wl~~~ygg~~~~ 158 (319)
..+|-++.++++|++.+=+.. ..+.|-+ ....+.-...+++-+.+.++||++. ++...|..|.+ +.|++.++
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 468889999999999886532 2344431 1111111356788888999999976 45544555543 23778765
Q ss_pred h--hHHHHHHHHHHH---HHHhCC
Q 020989 159 M--IVKDFTAYADVC---FREFGD 177 (319)
Q Consensus 159 ~--~~~~F~~ya~~v---~~r~gd 177 (319)
+ ..+.-.++.+.+ +..+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 223323334333 556764
No 150
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.28 E-value=2.1e+02 Score=26.93 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=37.9
Q ss_pred hHHHHHHHHHcCC--Ceeeecccccccc--c---CC--CCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 81 YKEDVKLMADTGL--DAYRFSISWSRLI--P---NG--RGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 81 ~~eDi~l~k~lG~--~~~R~si~Wsri~--P---~g--~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.++-++.+++.|+ +++=+.+.|..-. + ++ .=.+|++.+.-.+++|+.|++.|++.++.++
T Consensus 27 v~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 27 YLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred HHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeC
Confidence 3444555655554 4677777775421 1 11 1235555566678999999999999888775
No 151
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=41.78 E-value=74 Score=29.79 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=30.5
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHH
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINEL 128 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l 128 (319)
.+...+||+.++++|++.+-|++. +.+|.+|.+. ..++|+.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~---~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHH---HHHHHHHh
Confidence 456788999999999999999975 2257788543 34444444
No 152
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=41.73 E-value=1.3e+02 Score=30.10 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=60.5
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccC---CCCC--CChhhhH-HHHHHHHHHHHcCCeeeeeec----------CCC
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLIPN---GRGP--VNPKGLQ-YYNNLINELISYGIQPHVTLH----------HLD 143 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~P~---g~G~--~n~~~l~-~yd~~id~l~~~GI~pivtL~----------H~~ 143 (319)
...+.++.++++|++.+-+.--|..---+ +-|. +|.+.+- -...+++.+++.|+++=+=+- --.
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~ 138 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYRE 138 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHh
Confidence 45566788999999999998899754111 0132 2332221 268899999999999755320 124
Q ss_pred CcHHHHHhhC-----C-------CCChhhHHHHHHHHHHHHHHhC
Q 020989 144 LPQALEDEYG-----G-------WINRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 144 ~P~wl~~~yg-----g-------~~~~~~~~~F~~ya~~v~~r~g 176 (319)
.|.|+....+ | ..+|++.+...+-...+++.+|
T Consensus 139 hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 139 HPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred CccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 6888743211 1 3577888888887878788886
No 153
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=41.52 E-value=36 Score=31.18 Aligned_cols=61 Identities=7% Similarity=0.012 Sum_probs=39.8
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeee
Q 020989 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 138 (319)
Q Consensus 77 ~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivt 138 (319)
....+++-|++.+.+|.+.+++........+. ....-+...+.++++.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTP-PNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 34566777899999999999986432211111 11111344667888888899999877654
No 154
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=41.42 E-value=1.3e+02 Score=32.90 Aligned_cols=104 Identities=16% Similarity=0.328 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCC--eeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec---CCCCc-----------H
Q 020989 83 EDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HLDLP-----------Q 146 (319)
Q Consensus 83 eDi~l~k~lG~~--~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~---H~~~P-----------~ 146 (319)
+=++.+.++|+. ..=..|+|-.-.. +-.+|........++++.|.++|++.++.+. +-+.. .
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~yk--DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYK--DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhccc--ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 335667777776 6666666543321 2345666677789999999999999999887 22222 0
Q ss_pred HHHH----------hhCC------CCChhhHHHHHHHHHHHHHHhCCCcc---eEEecCCCcccc
Q 020989 147 ALED----------EYGG------WINRMIVKDFTAYADVCFREFGDRVS---YWTTVNEPNGFA 192 (319)
Q Consensus 147 wl~~----------~ygg------~~~~~~~~~F~~ya~~v~~r~gd~V~---~W~t~NEP~~~~ 192 (319)
|+.+ ...| ++|+++++ ++....++|.+.+. +|+-+|||.-..
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~----Ww~~~~~~fh~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVVE----WWLDELKRFHDEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHHH----HHHHHHHhhcccCCccceEEECCCcccCC
Confidence 0100 0012 45554444 44445667877765 799999997655
No 155
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=41.30 E-value=75 Score=28.79 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=41.0
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeeeee-cCCCCc
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTL-HHLDLP 145 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~--G~~n~~~l~~yd~~id~l~~~GI~pivtL-~H~~~P 145 (319)
-+.+++-|+.++++|.+.+|+...+ .|... .+......+..+++.+.+.+.||...+=. .+++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGK---RPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCC---CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 4566777899999999999864432 12110 11112334667888888999999877743 334433
No 156
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=40.99 E-value=64 Score=34.59 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=36.4
Q ss_pred HHHHHHcCCCeeeecc--cccc--------------cccCCCCCCChh-----hhHHHHHHHHHHHHcCCeeeeeec
Q 020989 85 VKLMADTGLDAYRFSI--SWSR--------------LIPNGRGPVNPK-----GLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 85 i~l~k~lG~~~~R~si--~Wsr--------------i~P~g~G~~n~~-----~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
|+.+|+||++++=+.= +... -.|..--.++.. ..+=++++|+.|.++||++|+++.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 8899999999997663 1110 001000011111 245689999999999999999863
No 157
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=40.79 E-value=46 Score=30.75 Aligned_cols=60 Identities=7% Similarity=0.058 Sum_probs=39.2
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~-G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
-+++++-+++++++|.+.++++-. +..+... .+.-...++.++++++.++++||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 445777899999999999998531 1111100 01112345677788889999999887754
No 158
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=40.13 E-value=2.7e+02 Score=26.34 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=64.9
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCC
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~ 157 (319)
.++.++-++.+|+.|+ .++.+|+=+--.|. .|..+ .+++.++++.+.+.|..- +.|. |- .|..+
T Consensus 119 l~~~~~~v~~ak~~g~-~v~~~i~~~~~~~~-~~~~~---~~~~~~~~~~~~~~G~d~-i~l~---------DT-~G~~~ 182 (287)
T PRK05692 119 LERFEPVAEAAKQAGV-RVRGYVSCVLGCPY-EGEVP---PEAVADVAERLFALGCYE-ISLG---------DT-IGVGT 182 (287)
T ss_pred HHHHHHHHHHHHHcCC-EEEEEEEEEecCCC-CCCCC---HHHHHHHHHHHHHcCCcE-EEec---------cc-cCccC
Confidence 3445667888899997 47766665444466 56666 679999999999999874 3443 22 45565
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
| ....+.++.+.+++++.--.....|-..+
T Consensus 183 P---~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gl 212 (287)
T PRK05692 183 P---GQVRAVLEAVLAEFPAERLAGHFHDTYGQ 212 (287)
T ss_pred H---HHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 5 46777788888888764345677776654
No 159
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=39.47 E-value=1.1e+02 Score=31.82 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=67.0
Q ss_pred hHHHHHHHHHcCCCeeeeccc--ccccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSIS--WSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~--Wsri~P~-g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~ 157 (319)
-++.+++|+++|++.+-+++. -.++.-. ++| .+ .+-..+.++.+++.|+++.+.|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg----------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG----------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC-----------
Confidence 368899999999997777772 2223222 122 12 45567888999999998777775 45652
Q ss_pred hhhHHHHHHHHHHHHH--HhC-CCcceEEecCCCccccccccccCCCCCC
Q 020989 158 RMIVKDFTAYADVCFR--EFG-DRVSYWTTVNEPNGFAMVGYDFGIAPPK 204 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~--r~g-d~V~~W~t~NEP~~~~~~gy~~g~~~P~ 204 (319)
++.+.+.+=++.+++ .++ |.|+.+-+.=+|+.....-|..|.+.|.
T Consensus 269 -qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 -SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred -CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 123455555555654 344 5677776666776655444666666544
No 160
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=39.44 E-value=1.4e+02 Score=29.01 Aligned_cols=93 Identities=14% Similarity=0.242 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCC-CChhhhHHHHHHHHHHHHcCCe-eeeeecCCCCcHHHHHhhCCCCC
Q 020989 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si-~Ws-ri~P~g~G~-~n~~~l~~yd~~id~l~~~GI~-pivtL~H~~~P~wl~~~ygg~~~ 157 (319)
+|.+++|+++|++.+-+++ +=+ ++... -|+ .+ .+-..+.|+.++++|+. +-+++. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~-l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQ-LNRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 6889999999999766666 222 22211 233 23 45678899999999997 445654 45662
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEecCCCccc
Q 020989 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~ 191 (319)
++.+.|.+=.+.+.+-=-+++..+...=||+..
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~ 199 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEGSI 199 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCCh
Confidence 234556655555443222456555555566643
No 161
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=39.27 E-value=89 Score=26.24 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 020989 117 GLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGD 177 (319)
Q Consensus 117 ~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd 177 (319)
.++=+.-+++.|++.|++|++.+.= -.+.|. .|-|. +++..+.|.+=.+.+++++|=
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wy--dytG~-~~~~r~~~y~kI~~~~~~~gf 90 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQP-VNGKWY--DYTGL-SKEMRQEYYKKIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE-----HHHH--HHTT---HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHHcCCceEEEecC-CcHHHH--HHhCC-CHHHHHHHHHHHHHHHHHCCC
Confidence 3566788999999999999998851 123444 24553 455667777777777888874
No 162
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=39.16 E-value=2.5e+02 Score=27.76 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=54.8
Q ss_pred CCccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecC-CCCcHHHHHhh
Q 020989 74 ACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH-LDLPQALEDEY 152 (319)
Q Consensus 74 a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H-~~~P~wl~~~y 152 (319)
++.-.-...+-++.++++|++.+=+ ....+.|-+ ....+.=...+++-+.|.++||++...+.. +..|.+ +.
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~--~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~ 99 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTF--HDDDLIPFG--APPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVF---KD 99 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEe--cccccCCCC--CChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccc---cC
Confidence 3334456788899999999998854 334455542 111111133667778899999997654432 223433 22
Q ss_pred CCCCChh--hHHHHHHHHH---HHHHHhCCC
Q 020989 153 GGWINRM--IVKDFTAYAD---VCFREFGDR 178 (319)
Q Consensus 153 gg~~~~~--~~~~F~~ya~---~v~~r~gd~ 178 (319)
|++.+++ ..+.=.++.+ .+++.+|-.
T Consensus 100 g~las~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 100 GGFTSNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6777653 2223222222 236677753
No 163
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=39.12 E-value=1.1e+02 Score=28.99 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=42.7
Q ss_pred cccchHHH-HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC
Q 020989 77 EYHKYKED-VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD 143 (319)
Q Consensus 77 ~y~~~~eD-i~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~ 143 (319)
||-.|.++ .+.+++-+-+.=.++..|-.+.|+| .+... ...++++.++++|+++++.+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~ 69 (313)
T cd02874 7 YYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLT 69 (313)
T ss_pred EEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCC
Confidence 33333333 5666766666667788899998764 33321 236889999999999999998654
No 164
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=38.90 E-value=60 Score=32.69 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=39.1
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCe-eeeeecCCCCc
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLP 145 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g---~G~~n~~~l~~yd~~id~l~~~GI~-pivtL~H~~~P 145 (319)
-++.+++|+++|++.+-+++ ...-|+- -|+. ...+-..+.|+.+++.|++ +-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 37889999999999666666 2222210 1221 1255678899999999997 445554 3555
No 165
>PRK07094 biotin synthase; Provisional
Probab=38.60 E-value=59 Score=30.88 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=40.6
Q ss_pred chHHHHHHHHHcCCCeeeeccc-c-cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 80 KYKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~-W-sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.-+++++.|+++|++.+-++++ - +++...-....+ ++.+.+.|+.+++.||.+..++.
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~i 186 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGFM 186 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceEE
Confidence 4578999999999999988883 2 233332111122 56788899999999998665543
No 166
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.52 E-value=1.1e+02 Score=30.24 Aligned_cols=109 Identities=18% Similarity=0.312 Sum_probs=65.7
Q ss_pred chHHHHHHHHHcCCC--eeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCC---CCc---HHHHHh
Q 020989 80 KYKEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL---DLP---QALEDE 151 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~--~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~---~~P---~wl~~~ 151 (319)
...+-++.+++.|+. ++=++..|..-.. .-.+|++.+.-.+++++.|+++|++.++.++-+ +.+ ..-..+
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 456667778877765 4445555655221 235666666677999999999999988876521 222 111111
Q ss_pred ---h-----CC----------------CCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccc
Q 020989 152 ---Y-----GG----------------WINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (319)
Q Consensus 152 ---y-----gg----------------~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~ 191 (319)
+ .| +.+++..+.|.+..+.+.+.+| ---+|.=+|||...
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 0 12 6788888888777777777665 34556889999874
No 167
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=37.52 E-value=1.5e+02 Score=29.28 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChh
Q 020989 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRM 159 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si-~Ws-ri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~ 159 (319)
++.++.++++|+|.+-+++ +-. ++... -|+... .+-..+.++.+++.+..+-++|. +++|. +
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~-lgR~h~--~~~~~~ai~~~~~~~~~v~~DlI-~GlPg------------q 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKK-LGRTHD--CMQAIKTIEAANTIFPRVSFDLI-YARSG------------Q 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHH-cCCCCC--HHHHHHHHHHHHHhCCcEEEEee-cCCCC------------C
Confidence 5889999999999777777 322 22222 344321 34456677888888888888887 56763 1
Q ss_pred hHHHHHHHHHHHHHHhCCCcceEEecCCCccccc
Q 020989 160 IVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAM 193 (319)
Q Consensus 160 ~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~ 193 (319)
+.+.+.+=++.+.+-=-++|..+...=||+....
T Consensus 175 t~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~ 208 (390)
T PRK06582 175 TLKDWQEELKQAMQLATSHISLYQLTIEKGTPFY 208 (390)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCEEccCChHH
Confidence 2345555556555543467777777777766443
No 168
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=37.44 E-value=1.3e+02 Score=31.62 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=58.0
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhh--------
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEY-------- 152 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~y-------- 152 (319)
.++|+++.++.|++.+|+..+-+.+ +-....++.++++|.....++..-..|.+-.+.|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4567889999999999998765544 2345666777778877776664322342110100
Q ss_pred ------------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 153 ------------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 153 ------------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
.|-..| ....+.++.+-++++ ..-...+.|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTP---YAAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCH---HHHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 244444 456667777777775 3446678887765
No 169
>PRK14706 glycogen branching enzyme; Provisional
Probab=36.86 E-value=2e+02 Score=30.65 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=55.4
Q ss_pred cchHHHH-HHHHHcCCCeeeecc--c------ccccccCCCCCCCh--hhhHHHHHHHHHHHHcCCeeeeee--cCCCC-
Q 020989 79 HKYKEDV-KLMADTGLDAYRFSI--S------WSRLIPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTL--HHLDL- 144 (319)
Q Consensus 79 ~~~~eDi-~l~k~lG~~~~R~si--~------Wsri~P~g~G~~n~--~~l~~yd~~id~l~~~GI~pivtL--~H~~~- 144 (319)
....+.+ +.+|+||++++-+.= + |- -.|.+--.++. ...+=++++|+.|.++||++|+++ .|+..
T Consensus 167 ~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wG-Y~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~ 245 (639)
T PRK14706 167 RELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWG-YQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTD 245 (639)
T ss_pred HHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCC-cCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcc
Confidence 3333443 678999999987542 1 10 00000000111 123458999999999999999986 35421
Q ss_pred ----------cHHH-HHhhC----CC-------CChhhHHHHHHHHHHHHHHhC
Q 020989 145 ----------PQAL-EDEYG----GW-------INRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 145 ----------P~wl-~~~yg----g~-------~~~~~~~~F~~ya~~v~~r~g 176 (319)
|.+- .+... .| .++++.+.+.+=++.-++.|+
T Consensus 246 ~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 246 ESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred hhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1110 00001 12 256788888888888888876
No 170
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=36.57 E-value=1e+02 Score=29.99 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=36.1
Q ss_pred HHHHHHcCCCeeeecccccc---cccCCCCCCCh----hhhHHHHHHHHHHHHcCCeeeeeecCCC
Q 020989 85 VKLMADTGLDAYRFSISWSR---LIPNGRGPVNP----KGLQYYNNLINELISYGIQPHVTLHHLD 143 (319)
Q Consensus 85 i~l~k~lG~~~~R~si~Wsr---i~P~g~G~~n~----~~l~~yd~~id~l~~~GI~pivtL~H~~ 143 (319)
++++|++|++-+=+.-.-.. +.|+....+|. -.-+...++.++|+++||++-+-+.++|
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 78999999998775432111 23332122332 1346889999999999999999887654
No 171
>PRK09389 (R)-citramalate synthase; Provisional
Probab=36.46 E-value=1.1e+02 Score=31.30 Aligned_cols=107 Identities=9% Similarity=-0.064 Sum_probs=71.3
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC--CcHHHHHh------
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD--LPQALEDE------ 151 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~--~P~wl~~~------ 151 (319)
-++|++.+.+.|++.+++.++-|.+.-.. -+.--++.++...+.+..+++.|+++.+++-... -|..+.+-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 48999999999999999999766653221 2333356788899999999999999988876432 23333211
Q ss_pred h----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccc
Q 020989 152 Y----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (319)
Q Consensus 152 y----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~ 191 (319)
. -|... +..+.++.+.+.++++ -.--....|-..+.
T Consensus 155 ~Ga~~i~l~DTvG~~~---P~~~~~lv~~l~~~~~-v~l~~H~HND~GlA 200 (488)
T PRK09389 155 AGADRICFCDTVGILT---PEKTYELFKRLSELVK-GPVSIHCHNDFGLA 200 (488)
T ss_pred CCCCEEEEecCCCCcC---HHHHHHHHHHHHhhcC-CeEEEEecCCccHH
Confidence 1 23334 4566667777766664 23355788887753
No 172
>PRK01060 endonuclease IV; Provisional
Probab=36.41 E-value=1e+02 Score=28.32 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeee
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 136 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pi 136 (319)
+..+++-++.++++|++.+=+.+.-++.... +..+.+ ..+++-+.+.++||++.
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~---~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEEL---NIEAFKAACEKYGISPE 64 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHH---HHHHHHHHHHHcCCCCC
Confidence 3447888999999999999988765544322 234533 34556667889999953
No 173
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=36.22 E-value=30 Score=29.65 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=41.2
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
....++-+++++.+|++.+++...+-...+.. ...--....+.++++.+.+.++|+++.+=.+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~ 133 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH 133 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc
Confidence 56778889999999999999987641111110 0011123466778888889999988666443
No 174
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=36.21 E-value=2.6e+02 Score=26.88 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=58.8
Q ss_pred hHHHHHHHHHcCCC--eeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCC-----CCcHHHHHh--
Q 020989 81 YKEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL-----DLPQALEDE-- 151 (319)
Q Consensus 81 ~~eDi~l~k~lG~~--~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~-----~~P~wl~~~-- 151 (319)
..+.++.+++.|+. ++=+.+.|..-. +.=.+|++.+---+++|+.|+++|++.++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~--~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~ 103 (339)
T cd06604 26 VREIADEFRERDIPCDAIYLDIDYMDGY--RVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLEN 103 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECchhhCCC--CceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHC
Confidence 34555556655544 444455554321 1122344333335788999999999988765422 122222111
Q ss_pred -----------h-----------CCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccc
Q 020989 152 -----------Y-----------GGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (319)
Q Consensus 152 -----------y-----------gg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~ 191 (319)
+ -.|.||+..+.|.+.-+.+. ..| ---.|+=+|||...
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 104 DYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred CeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCC-CceEeecCCCcccc
Confidence 0 13578888887766655544 333 23455789999865
No 175
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=35.35 E-value=77 Score=33.27 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHcCCeeeeee
Q 020989 118 LQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 118 l~~yd~~id~l~~~GI~pivtL 139 (319)
.+=++++|++|.++||++|+++
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDv 249 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDV 249 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 4568999999999999999986
No 176
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=35.27 E-value=2.9e+02 Score=26.15 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCCeeeeccc-ccccccCC--CC-C---C-ChhhhHHHHHHHHHHHHcC---CeeeeeecCCCCcHHHHH
Q 020989 82 KEDVKLMADTGLDAYRFSIS-WSRLIPNG--RG-P---V-NPKGLQYYNNLINELISYG---IQPHVTLHHLDLPQALED 150 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~-Wsri~P~g--~G-~---~-n~~~l~~yd~~id~l~~~G---I~pivtL~H~~~P~wl~~ 150 (319)
.+.|+..-++|.|++=+.|. |+.=.|.- -| + . +....+..+++++.+++.- -+--++|.-+|+
T Consensus 10 ~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDl------ 83 (265)
T cd08576 10 LEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFVWLDL------ 83 (265)
T ss_pred HHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEEEEEc------
Confidence 56778888999999999994 53333320 11 1 1 3445677888888887653 222223322222
Q ss_pred hhCCCCChhhHHHHHHHHHHHHHHhCCC---cceEEecCCCcc
Q 020989 151 EYGGWINRMIVKDFTAYADVCFREFGDR---VSYWTTVNEPNG 190 (319)
Q Consensus 151 ~ygg~~~~~~~~~F~~ya~~v~~r~gd~---V~~W~t~NEP~~ 190 (319)
|-+++.+....++..+.|+.+.+.|+.. +..++++..|.+
T Consensus 84 K~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 84 KNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 3356667888999999999999999965 888899999875
No 177
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=34.70 E-value=3.6e+02 Score=24.67 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=35.8
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeee
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 137 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~piv 137 (319)
.+++-++.++++|++.+=+++.=....+. ...++. ...+.+-+.+.++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~-~~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLA-RLDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchh-ccCCCH---HHHHHHHHHHHHcCCceeE
Confidence 57889999999999999886431111111 111232 3467788889999999753
No 178
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=34.36 E-value=1.5e+02 Score=27.42 Aligned_cols=91 Identities=14% Similarity=0.225 Sum_probs=57.3
Q ss_pred hHHHHHHHHHcCCC--eeeecccccccccCCCC--CCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCC
Q 020989 81 YKEDVKLMADTGLD--AYRFSISWSRLIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWI 156 (319)
Q Consensus 81 ~~eDi~l~k~lG~~--~~R~si~Wsri~P~g~G--~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~ 156 (319)
..+-++.+++.|+. ++=+++.|..-. +.- .+|.+.+.-.+++|+.|+++|++.++.+. |.-
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~v--------- 90 (265)
T cd06589 26 VLEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PYI--------- 90 (265)
T ss_pred HHHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hhH---------
Confidence 45566667765554 666666666432 233 56666666678999999999999998775 321
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccc
Q 020989 157 NRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (319)
Q Consensus 157 ~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~ 191 (319)
.+.|.+..+.+....| ---.|+=+|||...
T Consensus 91 ----~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 120 (265)
T cd06589 91 ----REWWAEVVKKLLVSLG-VDGFWTDMGEPSPG 120 (265)
T ss_pred ----HHHHHHHHHHhhccCC-CCEEeccCCCCCcC
Confidence 3455544444333333 23456889999754
No 179
>PRK06256 biotin synthase; Validated
Probab=34.28 E-value=72 Score=30.51 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcCCCeeeecc-cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 80 KYKEDVKLMADTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si-~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
.-++.++.||++|++.+-+++ +=.++.+.-...- .++...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 457889999999999988876 3222433311111 25677789999999999866544
No 180
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=34.25 E-value=65 Score=30.55 Aligned_cols=68 Identities=19% Similarity=0.405 Sum_probs=46.9
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChh
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRM 159 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~ 159 (319)
.++-+++++++|++.+.++.- +.-+++.+++|+++++.+.+++| +|..|--..|.=+...|....++|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~E 175 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTRE 175 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE-
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHHH
Confidence 366789999999999999873 11357889999999999999986 566666567766665555544444
No 181
>PRK05660 HemN family oxidoreductase; Provisional
Probab=33.89 E-value=1.8e+02 Score=28.45 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=60.3
Q ss_pred hHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eeecCCCCcHHHHHhhCCCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si-~Ws-ri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pi-vtL~H~~~P~wl~~~ygg~~~ 157 (319)
-++.++.|+++|++.+-+++ +=+ ++.-. -|+.. ..+-..+.|+.+++.|++++ ++|. +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~-l~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg----------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKR-LGRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD----------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 35889999999999777776 222 12211 12221 24556778999999999875 5564 46663
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcceEEecCCCccc
Q 020989 158 RMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGF 191 (319)
Q Consensus 158 ~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~ 191 (319)
++.+.+.+-.+.+.+.=-+++..+...=||+..
T Consensus 171 -qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~ 203 (378)
T PRK05660 171 -QSLEEALDDLRQAIALNPPHLSWYQLTIEPNTL 203 (378)
T ss_pred -CCHHHHHHHHHHHHhcCCCeEEeeccEeccCCc
Confidence 234566666666555444677777766677653
No 182
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=33.65 E-value=52 Score=28.17 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=39.4
Q ss_pred CcCCccccchHHHHHH-HHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeee
Q 020989 72 DVACDEYHKYKEDVKL-MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 136 (319)
Q Consensus 72 ~~a~~~y~~~~eDi~l-~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pi 136 (319)
..+|...+..++|++. ++++|++.+++.+.|+---- ...+.++| -..|+++||.|=
T Consensus 35 y~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt--~d~it~~g-------r~~l~~~giapp 91 (146)
T TIGR02159 35 YSGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWT--TDWITEDA-------REKLREYGIAPP 91 (146)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCC--hHHCCHHH-------HHHHHhcCccCC
Confidence 4577788888999754 67789999998887654321 23344333 478999999984
No 183
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=33.14 E-value=63 Score=26.07 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCeeeeccc-cccc-ccCCCCCCChhhhHHHHHHHHHHHHcCCee
Q 020989 82 KEDVKLMADTGLDAYRFSIS-WSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQP 135 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~-Wsri-~P~g~G~~n~~~l~~yd~~id~l~~~GI~p 135 (319)
++.++.+++.|++.+++++. -+.- ...--+ ....++..-+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 88999999999999999993 2221 111001 1233677889999999999995
No 184
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=33.01 E-value=1.3e+02 Score=28.61 Aligned_cols=63 Identities=14% Similarity=0.341 Sum_probs=44.5
Q ss_pred chHHHHHHHHHcCCCeeeeccc----ccc---cccC------------CCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 80 KYKEDVKLMADTGLDAYRFSIS----WSR---LIPN------------GRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~----Wsr---i~P~------------g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
..++-|+.|+..++|.+.+-++ |+- ..|+ +.|.+.++ =++++++.++++||++|.-+-
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viPEiD 93 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIPEID 93 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEEecc
Confidence 4677799999999999887775 522 1222 12345543 468999999999999998774
Q ss_pred CCCCcHHH
Q 020989 141 HLDLPQAL 148 (319)
Q Consensus 141 H~~~P~wl 148 (319)
+|...
T Consensus 94 ---~PGH~ 98 (303)
T cd02742 94 ---MPGHS 98 (303)
T ss_pred ---chHHH
Confidence 56543
No 185
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.50 E-value=1.6e+02 Score=27.64 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=51.7
Q ss_pred CCccccchHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHH
Q 020989 74 ACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALE 149 (319)
Q Consensus 74 a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g-~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~ 149 (319)
..+..+...+-.+.+|++|++.+|.+..=+|--|.+ .| +- .+.++.+-+.+++.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G-~g---~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQG-LG---EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCC-cH---HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 445566667777889999999999998658877753 22 22 34556666667999999999988765555554
No 186
>PLN02923 xylose isomerase
Probab=32.35 E-value=5.6e+02 Score=26.17 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=45.6
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHH----HHHcCCeeeee-ecCCCCcHHHHHhhCCCCCh
Q 020989 84 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINE----LISYGIQPHVT-LHHLDLPQALEDEYGGWINR 158 (319)
Q Consensus 84 Di~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~----l~~~GI~pivt-L~H~~~P~wl~~~ygg~~~~ 158 (319)
-++.+.+||+..|-|- -..|.|+| .-..+.-+.++++++. +.+.||+.... ..-|..|.... |+.+|+
T Consensus 128 aFEf~~kLG~~y~cFH--D~Dl~Peg--~sl~E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~---GAaTsp 200 (478)
T PLN02923 128 NFEFLKKLGVDRWCFH--DRDIAPDG--KTLEESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMH---GAATSS 200 (478)
T ss_pred HHHHHHHhCCCeEccC--ccccCCCC--CCHHHHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccC---CcCCCC
Confidence 3568899999987654 34588884 2223334455666654 55789997664 45588898763 788887
Q ss_pred h
Q 020989 159 M 159 (319)
Q Consensus 159 ~ 159 (319)
+
T Consensus 201 d 201 (478)
T PLN02923 201 E 201 (478)
T ss_pred C
Confidence 5
No 187
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=32.17 E-value=84 Score=31.62 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCC-CChhhhHHHHHHHHHHHHcCCe-eeeeecCCCCc
Q 020989 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLP 145 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si-~Ws-ri~P~g~G~-~n~~~l~~yd~~id~l~~~GI~-pivtL~H~~~P 145 (319)
++.+++|+++|++.+-+++ +=+ ++.-. -+. .+ .+...+.++.+++.|++ +-+++. +++|
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~-l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQA-VNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHH-hCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 6889999999999666666 222 12111 122 23 45678899999999996 334443 3444
No 188
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.80 E-value=72 Score=29.25 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHcCCCeeeeccccccc-ccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri-~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
+..++-|+..+.+|++.+|+.- .... .|. ....-...++.++++.+.+.++||+..+=.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~-~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAG-YDVYYEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECC-cccccccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 4456678889999999999741 1111 111 1011123456788888899999998776443
No 189
>PTZ00445 p36-lilke protein; Provisional
Probab=31.69 E-value=91 Score=28.65 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChh---------hhHHHHHHHHHHHHcCCeeeeeec
Q 020989 85 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPK---------GLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 85 i~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~---------~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
++++++.|++.+=+.++=.-|.--..|-.++. .=.-....+..|+++||.++|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68899999999998887554432211222222 234477889999999999999887
No 190
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=31.65 E-value=76 Score=29.50 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHH
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELI 129 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~ 129 (319)
..-.++||++.+++|++.+-++.. +.+|.+| ....+++++...
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD---~~~le~Li~aA~ 114 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGAL------TADGNID---MPRLEKLIEAAG 114 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeee------cCCCccC---HHHHHHHHHHcc
Confidence 445789999999999999999874 2368888 445555555443
No 191
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=31.50 E-value=73 Score=28.81 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=28.6
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHH
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELI 129 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~ 129 (319)
.....+||+.++++|++.+=|+.. - .+|.+|. +..+++++.+.
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L----~--~dg~iD~---~~~~~Li~~a~ 113 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGAL----T--EDGEIDE---EALEELIEAAG 113 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--B----E--TTSSB-H---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeE----C--CCCCcCH---HHHHHHHHhcC
Confidence 445788999999999999999974 2 2578994 45566666654
No 192
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=31.07 E-value=2.1e+02 Score=28.01 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChh
Q 020989 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRM 159 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si-~Ws-ri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~ 159 (319)
.+.++.|+++|+|.+-+++ +-+ ++... -|+.. ..+-..+.++.+++.++.+.++|. +++|. .
T Consensus 104 ~e~L~~l~~~GvnrislGvQS~~d~vL~~-l~R~~--~~~~~~~ai~~~~~~~~~v~~dli-~GlPg---------q--- 167 (380)
T PRK09057 104 AGRFRGYRAAGVNRVSLGVQALNDADLRF-LGRLH--SVAEALAAIDLAREIFPRVSFDLI-YARPG---------Q--- 167 (380)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHhCccEEEEee-cCCCC---------C---
Confidence 4899999999999888777 322 22222 23322 134456778888888888888886 46663 1
Q ss_pred hHHHHHHHHHHHHHHhCCCcceEEecCCCccccc
Q 020989 160 IVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAM 193 (319)
Q Consensus 160 ~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~ 193 (319)
+.+.+.+=.+.+.+.=-++|..+...-||+....
T Consensus 168 t~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~ 201 (380)
T PRK09057 168 TLAAWRAELKEALSLAADHLSLYQLTIEEGTAFY 201 (380)
T ss_pred CHHHHHHHHHHHHhcCCCeEEeecceecCCChHH
Confidence 2234444344444332356888877778876543
No 193
>PRK10426 alpha-glucosidase; Provisional
Probab=31.06 E-value=4.1e+02 Score=28.21 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=64.6
Q ss_pred hHHHHHHHHHcCCCe--eeecccccccccCCCC-------CCChhhhHHHHHHHHHHHHcCCeeeeeecCC---CCcHHH
Q 020989 81 YKEDVKLMADTGLDA--YRFSISWSRLIPNGRG-------PVNPKGLQYYNNLINELISYGIQPHVTLHHL---DLPQAL 148 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~--~R~si~Wsri~P~g~G-------~~n~~~l~~yd~~id~l~~~GI~pivtL~H~---~~P~wl 148 (319)
..+-++.+++.|+.. +=+. .|.......-| .+|.+.+--.+++|+.|++.|+++++.+.=+ +.|..-
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 445567778888654 4344 68754322111 3465555567899999999999988877532 333332
Q ss_pred HHh---h------C---------------CCCChhhHHHHHHHHHHHHHHhCCCcceE-EecCCC
Q 020989 149 EDE---Y------G---------------GWINRMIVKDFTAYADVCFREFGDRVSYW-TTVNEP 188 (319)
Q Consensus 149 ~~~---y------g---------------g~~~~~~~~~F~~ya~~v~~r~gd~V~~W-~t~NEP 188 (319)
+.+ | | .++||+..+.|.+..+......| |+.| .=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 211 0 1 15788888888776655455555 6666 678984
No 194
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=30.80 E-value=1.7e+02 Score=28.33 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHcCCCeeeecc--ccccccc-CC------CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC------
Q 020989 79 HKYKEDVKLMADTGLDAYRFSI--SWSRLIP-NG------RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD------ 143 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si--~Wsri~P-~g------~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~------ 143 (319)
.+.++=++++++.|+|++=+.+ ++-.|-= .. .|... ..+.=.+++++.|+++||.||--+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~-~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVK-PYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccc-ccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 4677889999999999999998 4444421 11 12111 1124468899999999999998766442
Q ss_pred -CcHHHHHhhC----------CCCCh---hhHHHHHHHHHHHHH
Q 020989 144 -LPQALEDEYG----------GWINR---MIVKDFTAYADVCFR 173 (319)
Q Consensus 144 -~P~wl~~~yg----------g~~~~---~~~~~F~~ya~~v~~ 173 (319)
.|.|....-+ .|.+| ++.+.-.+-|+.+++
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~ 135 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK 135 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHH
Confidence 3444331111 27655 555666666666553
No 195
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=29.98 E-value=2.5e+02 Score=27.96 Aligned_cols=81 Identities=16% Similarity=0.273 Sum_probs=53.5
Q ss_pred hHHHHHHHHHc-CCCeeeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeee-eeecCCCCcHHHHHhhCCCC
Q 020989 81 YKEDVKLMADT-GLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHLDLPQALEDEYGGWI 156 (319)
Q Consensus 81 ~~eDi~l~k~l-G~~~~R~si--~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pi-vtL~H~~~P~wl~~~ygg~~ 156 (319)
..+|++.++++ +++ .++++ .|+.. . .+.++.+.++++||++. ++...|..|.+ ++|.+.
T Consensus 42 ~~~d~~~v~~L~~~~-~~v~lH~~~d~~-------~------d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt 104 (378)
T TIGR02635 42 KIEDAALVHRLTGIC-PTVALHIPWDRV-------E------DYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLT 104 (378)
T ss_pred HHHHHHHHHhhcCCC-CceeeccCCccc-------c------CHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCC
Confidence 36788888777 555 66665 44111 2 36777788999999998 77776666654 346777
Q ss_pred Ch--hhHHHHHHHHHHH---HHHhCCC
Q 020989 157 NR--MIVKDFTAYADVC---FREFGDR 178 (319)
Q Consensus 157 ~~--~~~~~F~~ya~~v---~~r~gd~ 178 (319)
++ ++.+.-.++.+.| ++.+|..
T Consensus 105 ~pD~~vR~~AIe~~k~~idiA~eLGa~ 131 (378)
T TIGR02635 105 HPDKRIRRKAIDHLLECVDIAKKTGSK 131 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 65 4556666766655 4677763
No 196
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=29.94 E-value=2.1e+02 Score=29.58 Aligned_cols=94 Identities=10% Similarity=0.099 Sum_probs=54.3
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee----cCCCCcHHHHHh-----
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL----HHLDLPQALEDE----- 151 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL----~H~~~P~wl~~~----- 151 (319)
-+.|++...+.|++.+|+....+.+ +-.+..|+.+++.|.....++ .+-..|..+.+.
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv-------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~ 165 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDP-------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLL 165 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChH-------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 4457899999999999998865554 223444555555555443332 111122221110
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhC-CCcceEEecCCCcc
Q 020989 152 -----------YGGWINRMIVKDFTAYADVCFREFG-DRVSYWTTVNEPNG 190 (319)
Q Consensus 152 -----------ygg~~~~~~~~~F~~ya~~v~~r~g-d~V~~W~t~NEP~~ 190 (319)
--|..+| ....+.++.+-++++ +..-...+.|-..+
T Consensus 166 ~~Gad~I~IkDtaGll~P---~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl 213 (499)
T PRK12330 166 DMGADSICIKDMAALLKP---QPAYDIVKGIKEACGEDTRINLHCHSTTGV 213 (499)
T ss_pred HcCCCEEEeCCCccCCCH---HHHHHHHHHHHHhCCCCCeEEEEeCCCCCc
Confidence 0345555 466667777778886 44445678887765
No 197
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=29.75 E-value=51 Score=33.90 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=48.4
Q ss_pred HHcCCCeeeeccccccccc------CCCCCCChh-------hhHHHHHHHHHHHHc--CCeeeeeecCCCCcHHHHHh--
Q 020989 89 ADTGLDAYRFSISWSRLIP------NGRGPVNPK-------GLQYYNNLINELISY--GIQPHVTLHHLDLPQALEDE-- 151 (319)
Q Consensus 89 k~lG~~~~R~si~Wsri~P------~g~G~~n~~-------~l~~yd~~id~l~~~--GI~pivtL~H~~~P~wl~~~-- 151 (319)
+.+|++..|+.|.=+..-. +.++.++-+ ..++--.+|.++++. +|+.+.+- |..|.|+-..
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCc
Confidence 4589999999883222211 112222211 112222455555543 35555544 7899998432
Q ss_pred h--CCCCC----hhhHHHHHHHHHHHHHHhCCC-cceE--EecCCCccc
Q 020989 152 Y--GGWIN----RMIVKDFTAYADVCFREFGDR-VSYW--TTVNEPNGF 191 (319)
Q Consensus 152 y--gg~~~----~~~~~~F~~ya~~v~~r~gd~-V~~W--~t~NEP~~~ 191 (319)
. +|... ++..+.|++|--+.++.|+.. |..| .+-|||...
T Consensus 188 ~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~ 236 (496)
T PF02055_consen 188 MNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNG 236 (496)
T ss_dssp SCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGG
T ss_pred CcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCC
Confidence 1 24443 345667777777777777764 5656 689999864
No 198
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=29.59 E-value=2.7e+02 Score=28.43 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCeeeeccc-c-cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 82 KEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si~-W-sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
++-+++|+++|++.+-++++ = .++.-.=....+ .+-..+.|+.++++||.+.+.+. +++|
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 45679999999998888873 2 222211011233 45678899999999999887655 2455
No 199
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=28.78 E-value=1.9e+02 Score=27.92 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=53.6
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccC-----CCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPN-----GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGW 155 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~-----g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~ 155 (319)
-+|.++.||++|++.+- +...+-+-|+ .++... .+-..+.|+.+++.||++..+.. +++|
T Consensus 140 ~~e~l~~LkeAGl~~i~-~~~~E~~~~~v~~~i~~~~~~---~~~~~~~i~~a~~~Gi~v~s~~i-~G~~---------- 204 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMP-GTAAEILDDEVRKVICPDKLS---TAEWIEIIKTAHKLGIPTTATIM-YGHV---------- 204 (343)
T ss_pred HHHHHHHHHHhCccccc-CcchhhcCHHHHHhcCCCCCC---HHHHHHHHHHHHHcCCcccceEE-EecC----------
Confidence 47789999999999875 1122111111 122223 34457899999999998876653 2222
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCcceEEecC
Q 020989 156 INRMIVKDFTAYADVCFREFGDRVSYWTTVN 186 (319)
Q Consensus 156 ~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~N 186 (319)
.+.+-+.....+.+.+-..++ .+.-.+++|
T Consensus 205 Et~ed~~~~l~~lr~l~~~~~-~~~~~iP~~ 234 (343)
T TIGR03551 205 ETPEHWVDHLLILREIQEETG-GFTEFVPLP 234 (343)
T ss_pred CCHHHHHHHHHHHHHhhHHhC-CeeEEEecc
Confidence 233445556666666666665 355566666
No 200
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=28.49 E-value=1.3e+02 Score=24.94 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcCCCeeeeccc-ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 81 YKEDVKLMADTGLDAYRFSIS-WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~-Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
-+++++.|+++|+..+.+|++ .+...-.... -....++..-+.|+.+.+.|+...+.+.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEE
Confidence 378999999999999999995 3332111000 0112266778888889998888777664
No 201
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.89 E-value=83 Score=28.96 Aligned_cols=58 Identities=7% Similarity=0.079 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhh----hHHHHHHHHHHHHcCCeeeeeec
Q 020989 78 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKG----LQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 78 y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~----l~~yd~~id~l~~~GI~pivtL~ 140 (319)
..++++-|++.+++|.+.+++.- ...+. +.-+.+. .+..+++.+.++++||...+=.+
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~---~~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAG---YDVYY--EQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECC---ccccc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 44567778999999999999742 11111 1112333 45567788888899987766443
No 202
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=27.88 E-value=2.6e+02 Score=26.80 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=35.3
Q ss_pred hHHHHHHHHHcCCCeeeec----ccc---cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 81 YKEDVKLMADTGLDAYRFS----ISW---SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~s----i~W---sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.++.++.||++|++.+-.. ++. .++.|. ..+ .+-+.+.++.+++.||++..++.
T Consensus 142 ~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~---~~s---~~~~l~~i~~a~~~Gi~v~~~~i 202 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK---KIS---SEEWLEVMETAHKLGLPTTATMM 202 (340)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC---CCC---HHHHHHHHHHHHHcCCCccceeE
Confidence 3788999999999976421 110 111122 122 55678999999999998765543
No 203
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=27.49 E-value=3.1e+02 Score=25.90 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=37.8
Q ss_pred hHHHHHHHHHcCCCeee-eccc-c-----cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 81 YKEDVKLMADTGLDAYR-FSIS-W-----SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R-~si~-W-----sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.+|.++.||++|++.+- .+.+ - .++.|. ... .+.+.+.++.+++.||++..++.
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~---~~t---~~~~l~~i~~a~~~Gi~~~s~~i 166 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN---KLS---SDEWLEVIKTAHRLGIPTTATMM 166 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC---CCC---HHHHHHHHHHHHHcCCCceeeEE
Confidence 47889999999999885 2321 1 122233 233 45667999999999999987764
No 204
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=27.42 E-value=2.5e+02 Score=28.01 Aligned_cols=91 Identities=20% Similarity=0.353 Sum_probs=54.5
Q ss_pred HcCCCeeeecccccccccCCCCCCChhhhHHHHHHH--HHHHHcCCeeeeeecCCCCcHHHHHhh---CC---CCChhhH
Q 020989 90 DTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLI--NELISYGIQPHVTLHHLDLPQALEDEY---GG---WINRMIV 161 (319)
Q Consensus 90 ~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~i--d~l~~~GI~pivtL~H~~~P~wl~~~y---gg---~~~~~~~ 161 (319)
++|+...|+.|.=.+.-- .|..|. +|+++= ...++.|++++.+- |..|.|+-... || -+.+
T Consensus 77 ~lg~si~Rv~I~~ndfsl--~g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~--- 145 (433)
T COG5520 77 QLGFSILRVPIDSNDFSL--GGSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKY--- 145 (433)
T ss_pred ccCceEEEEEeccccccc--CCCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccch---
Confidence 578889998886555432 255552 344332 33567788877665 67999986432 33 3444
Q ss_pred HHHHHHHHHH---HHHhCC---CcceEEecCCCccc
Q 020989 162 KDFTAYADVC---FREFGD---RVSYWTTVNEPNGF 191 (319)
Q Consensus 162 ~~F~~ya~~v---~~r~gd---~V~~W~t~NEP~~~ 191 (319)
+.|++||+.+ +..+++ -+.+--+=|||.-.
T Consensus 146 e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 146 EKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 4555555444 444443 46666799999854
No 205
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.35 E-value=2.2e+02 Score=26.97 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=44.3
Q ss_pred chHHHHHHHHHcCCCeeeeccc----ccccccC---CCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHH
Q 020989 80 KYKEDVKLMADTGLDAYRFSIS----WSRLIPN---GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQAL 148 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~----Wsri~P~---g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl 148 (319)
..++-|+.|+..|+|.+-+=++ ++. .|. ++|.+.++ =++++++.++++||++|..+- +|..+
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~---ei~ei~~yA~~~gI~vIPeid---~pGH~ 86 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKE---EIREIDDYAAELGIEVIPLIQ---TLGHL 86 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHH---HHHHHHHHHHHcCCEEEecCC---CHHHH
Confidence 4678899999999999887553 221 122 14666654 468999999999999998774 45444
No 206
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=27.04 E-value=3.9e+02 Score=26.09 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHcCCCeeeeccc-c-cccccCC--CCCCChhhhHHHHHHHHHHHHcCCee-eeeecCCCCcHHHHHhhC
Q 020989 79 HKYKEDVKLMADTGLDAYRFSIS-W-SRLIPNG--RGPVNPKGLQYYNNLINELISYGIQP-HVTLHHLDLPQALEDEYG 153 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~-W-sri~P~g--~G~~n~~~l~~yd~~id~l~~~GI~p-ivtL~H~~~P~wl~~~yg 153 (319)
..-.++++.+|++|++.+.++++ = ....+.- .|. ...++.--+.++.+++.|++. -+.+. +++|.|..+.
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~--~h~~~~rl~~i~~a~~aG~~~v~~g~i-~Gl~e~~~d~-- 233 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGK--KKDFRYRLNTPERAAKAGMRKIGIGAL-LGLDDWRTDA-- 233 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCC--CCCHHHHHHHHHHHHHcCCCeeceeEE-EeCchhHHHH--
Confidence 46788899999999998888773 2 2233320 011 112445566789999999983 33333 3566544332
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCc
Q 020989 154 GWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 154 g~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~ 189 (319)
-..+.-.+.+-.+|.+ ....+.+|+-+
T Consensus 234 --------~~~a~~l~~L~~~~~~-~~~sv~~~~l~ 260 (366)
T TIGR02351 234 --------FFTAYHLRYLQKKYWK-TEISISVPRLR 260 (366)
T ss_pred --------HHHHHHHHHHHHHcCC-CCccccccccc
Confidence 2344455555566653 44457788743
No 207
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=26.95 E-value=1.4e+02 Score=24.12 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=32.0
Q ss_pred CeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 94 DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 94 ~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
+..|++++ +-+++|..|+..+-++++.+++.|..+.++-
T Consensus 40 ~~~~idLs-------~v~rvDSaglALL~~~~~~~k~~g~~~~L~~ 78 (99)
T COG3113 40 DTVRIDLS-------GVSRVDSAGLALLLHLIRLAKKQGNAVTLTG 78 (99)
T ss_pred CeEEEehh-------hcceechHHHHHHHHHHHHHHHcCCeeEEec
Confidence 67777765 4678899999999999999999999666543
No 208
>PRK08508 biotin synthase; Provisional
Probab=26.70 E-value=1.4e+02 Score=27.94 Aligned_cols=56 Identities=11% Similarity=0.069 Sum_probs=39.4
Q ss_pred hHHHHHHHHHcCCCeeeecccc-cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 81 YKEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~W-sri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
.+|.++.||++|++.+-.+++= +++.|.-... ..++..-+.++.+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~---~~~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICTT---HTWEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCCC---CCHHHHHHHHHHHHHcCCeeccee
Confidence 4899999999999999988732 3466652111 225555667788999999775544
No 209
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=26.64 E-value=2e+02 Score=30.99 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHH
Q 020989 120 YYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVC 171 (319)
Q Consensus 120 ~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v 171 (319)
.+..+|+.++++|+..=+...|-.++.-+..+||. +.+..++.-.+|++.|
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~ 261 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARIC 261 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999999875 4444666666666655
No 210
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=26.64 E-value=2.8e+02 Score=25.42 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHc-CCeeee
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHV 137 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~-GI~piv 137 (319)
..+++.++.++++|++.+=+.+......+. ...+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS--RPLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC--CCCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 678899999999999999888765544333 11232 3456666777777 655443
No 211
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=26.51 E-value=1.4e+02 Score=30.55 Aligned_cols=93 Identities=10% Similarity=0.110 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCC-eeeeeecCCCCcHHHHHhhCCCCCh
Q 020989 82 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGI-QPHVTLHHLDLPQALEDEYGGWINR 158 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si-~Ws-ri~P~g~G~~n~~~l~~yd~~id~l~~~GI-~pivtL~H~~~P~wl~~~ygg~~~~ 158 (319)
++-++.|+++|++.+-+++ +-+ ++... -|+. ...+-..+.++.+++.|+ .+-++|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~-igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg------------ 332 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKA-IGRH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG------------ 332 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHH-hCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC------------
Confidence 6779999999999444444 222 12211 2332 125667889999999999 4556665 46662
Q ss_pred hhHHHHHHHHHHHHHHhCCCcceEEecCCCcc
Q 020989 159 MIVKDFTAYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 159 ~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
++.+.+.+-.+.+.+.=-+.+......=+|..
T Consensus 333 Et~ed~~~tl~~l~~L~pd~isv~~L~i~~gT 364 (488)
T PRK08207 333 EGLEEVKHTLEEIEKLNPESLTVHTLAIKRAS 364 (488)
T ss_pred CCHHHHHHHHHHHHhcCcCEEEEEeceEcCCC
Confidence 23456666666654433344555544334443
No 212
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=26.51 E-value=1.4e+02 Score=26.33 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCC--eeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 83 EDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 83 eDi~l~k~lG~~--~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
.|.+.+|+.|++ .+|.+ +|.+..| ..+..-++.++++||. +..+||..|
T Consensus 16 ~dw~~vk~~Gi~faiikat--------eG~~~~D----~~~~~n~~~A~~aGl~--vG~Yhf~~~ 66 (192)
T cd06522 16 ADYNKLKNYGVKAVIVKLT--------EGTTYRN----PYAASQIANAKAAGLK--VSAYHYAHY 66 (192)
T ss_pred HHHHHHHHcCCCEEEEEEc--------CCCCccC----hHHHHHHHHHHHCCCe--eEEEEEEec
Confidence 477889999988 44442 3455567 4678999999999994 688998765
No 213
>PRK05474 xylose isomerase; Provisional
Probab=26.23 E-value=3e+02 Score=27.92 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHH----HHHcCCeeee-eecCCCCcHHHHHhhCCCCC
Q 020989 83 EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINE----LISYGIQPHV-TLHHLDLPQALEDEYGGWIN 157 (319)
Q Consensus 83 eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~----l~~~GI~piv-tL~H~~~P~wl~~~ygg~~~ 157 (319)
.-++.+.+||+..+-|- -..|.|+| .-..+.-+.++++++. +.+.||+... |..-|..|.... |+++|
T Consensus 83 ~afe~~~kLg~~~~~FH--D~D~~peg--~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tn 155 (437)
T PRK05474 83 AAFEFFTKLGVPYYCFH--DVDVAPEG--ASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAATN 155 (437)
T ss_pred HHHHHHHHhCCCeeccC--ccccCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCCC
Confidence 34677999999987654 33588884 2223333455666544 5678998655 566788998753 88998
Q ss_pred hh
Q 020989 158 RM 159 (319)
Q Consensus 158 ~~ 159 (319)
|+
T Consensus 156 pd 157 (437)
T PRK05474 156 PD 157 (437)
T ss_pred CC
Confidence 75
No 214
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.01 E-value=1.8e+02 Score=27.00 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=37.8
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecC
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 141 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H 141 (319)
..+-++.++++|.+++-+.+..+|.... ..++.... +.+-+.+.++++.......|
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~--~~~~~~~~---~~~~~~~~~~~~~~~~i~~H 68 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRR--PMLEEEVI---DWFKAALETNKNLSQIVLVH 68 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCC--CCCCHHHH---HHHHHHHHHcCCCCcceecc
Confidence 4667899999999999999888887544 22343333 34445578888874434455
No 215
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.55 E-value=1.7e+02 Score=26.98 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=38.3
Q ss_pred cchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeee
Q 020989 79 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 137 (319)
Q Consensus 79 ~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~piv 137 (319)
..|.+-+++++++|++.+=+++.-....|. .-.+. -....++-+.+.++||++..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~-~~~~~---~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLS-RLDWS---REQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhh-ccCCC---HHHHHHHHHHHHHcCCCcee
Confidence 468999999999999999987654322222 11122 24567788899999998753
No 216
>PTZ00445 p36-lilke protein; Provisional
Probab=25.48 E-value=91 Score=28.67 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCeeeeeecCCCCcHHHHH-hhCCCCChh---------hHHHHHHHHHHHHH
Q 020989 119 QYYNNLINELISYGIQPHVTLHHLDLPQALED-EYGGWINRM---------IVKDFTAYADVCFR 173 (319)
Q Consensus 119 ~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~-~ygg~~~~~---------~~~~F~~ya~~v~~ 173 (319)
+.-+.+++.|++.||+.+++=. |.= +.. .-|||.++. ..+.|....+.+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~--DnT--lI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDF--DLT--MITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecc--hhh--hhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 4568889999999999987532 211 111 238899887 55667766655443
No 217
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=25.24 E-value=55 Score=29.99 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCcceEEecCCCcc
Q 020989 166 AYADVCFREFGDRVSYWTTVNEPNG 190 (319)
Q Consensus 166 ~ya~~v~~r~gd~V~~W~t~NEP~~ 190 (319)
...+.+.+. +..+++++.||||+.
T Consensus 54 ~~~~~v~~~-~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 54 DWLANVQNA-HPGSKHLLGFNEPDL 77 (239)
T ss_pred HHHHHHHhh-ccCccceeeecCCCC
No 218
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=24.85 E-value=3.6e+02 Score=25.14 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=47.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCc
Q 020989 110 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 110 ~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~ 189 (319)
+|++| ++-+++.|+.+.+.|+.-++.+.+-+- .-.. +.+...+..+.+.+.-++++....-....+
T Consensus 13 ~g~iD---~~~~~~~i~~l~~~Gv~Gi~~~GstGE--------~~~L---s~~Er~~~~~~~~~~~~~~~~vi~gv~~~s 78 (285)
T TIGR00674 13 DGSVD---FAALEKLIDFQIENGTDAIVVVGTTGE--------SPTL---SHEEHKKVIEFVVDLVNGRVPVIAGTGSNA 78 (285)
T ss_pred CCCcC---HHHHHHHHHHHHHcCCCEEEECccCcc--------cccC---CHHHHHHHHHHHHHHhCCCCeEEEeCCCcc
Confidence 58899 566789999999999999988764110 1112 345677777777887788888776655544
Q ss_pred c
Q 020989 190 G 190 (319)
Q Consensus 190 ~ 190 (319)
+
T Consensus 79 ~ 79 (285)
T TIGR00674 79 T 79 (285)
T ss_pred H
Confidence 3
No 219
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=24.66 E-value=1.9e+02 Score=26.53 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCC---ChhhHHHHHHHHHHHHHHhCCCcceE
Q 020989 120 YYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWI---NRMIVKDFTAYADVCFREFGDRVSYW 182 (319)
Q Consensus 120 ~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~---~~~~~~~F~~ya~~v~~r~gd~V~~W 182 (319)
..+++++++.++|++-+.-.-|..+|..... ..|. +.+..+.|.+-++.+-++|+++++..
T Consensus 16 ~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~ 79 (253)
T TIGR01856 16 TLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLKIL 79 (253)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 4689999999999999999999665422111 1121 12234444445555677898776544
No 220
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=24.59 E-value=74 Score=18.75 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCCee
Q 020989 120 YYNNLINELISYGIQP 135 (319)
Q Consensus 120 ~yd~~id~l~~~GI~p 135 (319)
.-.++++.+++.||+|
T Consensus 19 ~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 19 AALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3467778888889887
No 221
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=24.39 E-value=1.9e+02 Score=28.91 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=60.4
Q ss_pred HHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCC--CCcH-----HHHHhh--------
Q 020989 88 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHL--DLPQ-----ALEDEY-------- 152 (319)
Q Consensus 88 ~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~--~~P~-----wl~~~y-------- 152 (319)
|.-+|+-..|+.+.|. |.+|+ +...++|+...++||.=|=|-.-+ +..- .|.+.|
T Consensus 13 ~s~lgfG~MRlp~~~~-------~~id~---~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaT 82 (391)
T COG1453 13 LSILGFGCMRLPLKEQ-------GSIDE---ENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLAT 82 (391)
T ss_pred cceeccceeecccccC-------CCccH---HHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEe
Confidence 4448999999999987 55784 467899999999999988776433 2221 121111
Q ss_pred --CCCCChhhHHHHHHHHHHHHHHhCC-CcceEEecC
Q 020989 153 --GGWINRMIVKDFTAYADVCFREFGD-RVSYWTTVN 186 (319)
Q Consensus 153 --gg~~~~~~~~~F~~ya~~v~~r~gd-~V~~W~t~N 186 (319)
..|.- +..+.|.++-..=.++++- +++++.+.|
T Consensus 83 Klp~~~~-~~~edm~r~fneqLekl~~Dy~D~yliH~ 118 (391)
T COG1453 83 KLPSWPV-KDREDMERIFNEQLEKLGTDYIDYYLIHG 118 (391)
T ss_pred ecCCccc-cCHHHHHHHHHHHHHHhCCchhhhhhhcc
Confidence 12221 3468899998888899884 788886543
No 222
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=24.11 E-value=5.4e+02 Score=25.46 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=44.5
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eeeeecCCCCcHHHHH
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLPQALED 150 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~-pivtL~H~~~P~wl~~ 150 (319)
--+.|..+.++|.+.+|+.+. |.++.+-..++.+.|++.|.. |++.=.||++-..+..
T Consensus 33 tv~QI~~L~~aGceivRvavp------------~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a 91 (359)
T PF04551_consen 33 TVAQIKRLEEAGCEIVRVAVP------------DMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA 91 (359)
T ss_dssp HHHHHHHHHHCT-SEEEEEE-------------SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH
Confidence 356788999999999999873 356677889999999999987 7777789998877764
No 223
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=23.78 E-value=86 Score=22.43 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=24.7
Q ss_pred HHHHHHHH-HcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHH
Q 020989 122 NNLINELI-SYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYA 168 (319)
Q Consensus 122 d~~id~l~-~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya 168 (319)
+++++.|. ..||+|.+|.. .|-. ..+++++.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~------Le~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQK------LEKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHH------HHHHCHHHHHHhh
Confidence 67888885 66999998875 4533 2245667777763
No 224
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.65 E-value=3e+02 Score=26.59 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=43.7
Q ss_pred chHHHHHHHHHcCCCeeeeccc----c-------cccccCC---------CCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 80 KYKEDVKLMADTGLDAYRFSIS----W-------SRLIPNG---------RGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~----W-------sri~P~g---------~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
..++-|+.|+..++|.+-+-+. | +++-..| .|.+-. +=++++++.++++||++|.-+
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec
Confidence 4677899999999998877663 3 2332111 123443 346899999999999999877
Q ss_pred cCCCCcHHHH
Q 020989 140 HHLDLPQALE 149 (319)
Q Consensus 140 ~H~~~P~wl~ 149 (319)
|+|....
T Consensus 96 ---D~PGH~~ 102 (329)
T cd06568 96 ---DMPGHTN 102 (329)
T ss_pred ---CCcHHHH
Confidence 4666543
No 225
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=23.58 E-value=3.8e+02 Score=27.22 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=45.5
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHH----HHHHcCCeeee-eecCCCCcHHHHHhhCCCCCh
Q 020989 84 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLIN----ELISYGIQPHV-TLHHLDLPQALEDEYGGWINR 158 (319)
Q Consensus 84 Di~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id----~l~~~GI~piv-tL~H~~~P~wl~~~ygg~~~~ 158 (319)
-++.+.+||+..+-|- -..|.|+| .-..+--+.++++++ .+.+.||++.. |..-|..|.... |+.+||
T Consensus 83 aFef~~kLg~~~~~FH--D~D~~peg--~~~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnP 155 (434)
T TIGR02630 83 AFEFFEKLGVPYYCFH--DRDIAPEG--ASLRETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSP 155 (434)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCC
Confidence 3567899999887654 34588884 222333344455554 45678999655 556788998753 889987
Q ss_pred h
Q 020989 159 M 159 (319)
Q Consensus 159 ~ 159 (319)
+
T Consensus 156 d 156 (434)
T TIGR02630 156 D 156 (434)
T ss_pred C
Confidence 5
No 226
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.08 E-value=2.8e+02 Score=25.26 Aligned_cols=52 Identities=6% Similarity=-0.002 Sum_probs=34.5
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeee
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 137 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~piv 137 (319)
.+++.+++++++|++.+=+........+. .... ..-+++-+.+.++||++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~---~~~~---~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAP---DLKA---GGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcccccc---ccCc---hHHHHHHHHHHHcCCeEEE
Confidence 57999999999999998874332222111 1221 2346677788899998753
No 227
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=22.98 E-value=2.3e+02 Score=21.36 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=31.4
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 86 ~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
+.++.+|+..+|-| . +..+.+-+.++++.|+ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS--------s-----~rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS--------S-----SRGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC--------C-----CCcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 66789999999999 2 2345677899999999 787777765
No 228
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=22.97 E-value=1.5e+02 Score=28.15 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=46.5
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCC
Q 020989 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGG 154 (319)
Q Consensus 86 ~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg 154 (319)
+..|+.|-..+=++-.|..+. |+ ...++...++|...+..|+++.+||.-.+--+..+-+-.|
T Consensus 127 k~AK~~GSTRFCmGaAWRD~~----GR--k~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAG 189 (380)
T KOG2900|consen 127 KEAKRNGSTRFCMGAAWRDMK----GR--KSAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAG 189 (380)
T ss_pred HHHHhcCCceeecchhhhhhc----cc--hhHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhcc
Confidence 455778888888888999884 22 3458889999999999999999999755544444433234
No 229
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=22.92 E-value=2.8e+02 Score=26.38 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 020989 119 QYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFG 176 (319)
Q Consensus 119 ~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~g 176 (319)
....+.|..|+++|+++++++-.++-. ....++...+.|++....+++.|+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~~~~-------~~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGANGH-------VDLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCc-------cccCCHHHHHHHHHHHHHHHHHhC
Confidence 345777889999999999998644321 113455566777777777777776
No 230
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=22.85 E-value=1.9e+02 Score=26.17 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=34.7
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 86 ~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
+++|++|++.+=++-|=.| +.+ .. ..+-+..+.++||+|+++.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~E-------td---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKL-------AD---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCc-------cH---HHHHHHHHHHCCCEEEEEE
Confidence 7899999999988887666 322 21 4677889999999999999
No 231
>PRK15108 biotin synthase; Provisional
Probab=22.65 E-value=2e+02 Score=27.95 Aligned_cols=49 Identities=14% Similarity=0.457 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 84 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 84 Di~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
-.+.+++.|++.+=++.+|. .|. ...++++.+++..+++.|+++++++.
T Consensus 84 ~a~~~~~~G~~~i~i~~~g~--~p~------~~~~e~i~~~i~~ik~~~i~v~~s~G 132 (345)
T PRK15108 84 SARKAKAAGSTRFCMGAAWK--NPH------ERDMPYLEQMVQGVKAMGLETCMTLG 132 (345)
T ss_pred HHHHHHHcCCCEEEEEecCC--CCC------cchHHHHHHHHHHHHhCCCEEEEeCC
Confidence 34555689999876666773 332 12378999999999999998876654
No 232
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.62 E-value=2.1e+02 Score=26.07 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=36.8
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeee
Q 020989 80 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 137 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~piv 137 (319)
.+++-++.++++|++.+=+++.=.+..+. ...++. ...+++-+.+.++||++..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~-~~~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLA-RLDWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccc-cccCCH---HHHHHHHHHHHHcCCCceE
Confidence 57889999999999999887541111111 122332 3456778899999999764
No 233
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.61 E-value=1.3e+02 Score=28.67 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=47.7
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC
Q 020989 84 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD 143 (319)
Q Consensus 84 Di~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~ 143 (319)
+.+.+|+.|-+++.|-+-|.-=+| ++|+.-+.+.+++...|.+.||--++-...++
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~----e~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDED----EINEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCch----HHhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 357899999999999998875443 58898999999999999999999888877644
No 234
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=22.38 E-value=38 Score=31.77 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCccccccccccCCC
Q 020989 122 NNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPNGFAMVGYDFGIA 201 (319)
Q Consensus 122 d~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~~~~~~gy~~g~~ 201 (319)
-+..-.+.++.+.|+++||||+. | ..-+.+....+.++.+.+=++.--.++-.+-.-|---....+.+..||....+
T Consensus 71 Gd~~G~~~a~~~~pl~SlHH~~~--~-~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy 147 (255)
T PF04646_consen 71 GDPSGFLEAHPLAPLVSLHHWDS--V-DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVY 147 (255)
T ss_pred cCcceeeecCCCCceeeeeehhh--c-cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEE
Confidence 33444556677999999999985 2 22345555566666666644433333332222222233334445678877665
No 235
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=22.26 E-value=1.2e+02 Score=21.60 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhcccccccC---CCCCCc-eehhhhhhhhhc
Q 020989 6 FLLIFLLNLAASALTAVEYTKN---DFPPGF-IFGSGTSAYQVE 45 (319)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~---~fp~~F-lwG~atsa~Q~E 45 (319)
++++++++||+ |-|.+++-.- -||-|- -|--+-|-.|+|
T Consensus 4 ~lL~l~l~La~-CqT~D~lAtckGpiFpLNVgrWqptpsDLq~~ 46 (55)
T PRK13859 4 CLLCLALALAG-CQTNDTLASCKGPIFPLNVGRWQPTPSDLQLT 46 (55)
T ss_pred hHHHHHHHHHh-ccccCccccccCCccccccccccCChhhcccc
Confidence 56777888888 8888885332 255432 355566666666
No 236
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=22.02 E-value=3.3e+02 Score=29.80 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=43.1
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCC-------CCCChh--hhHHHHHHHHHHHHcCCeeeeeec
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGR-------GPVNPK--GLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~-------G~~n~~--~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
-++-++.+|++||.++=.|=-|.-.=-+.- .++|++ |.+-+.+++..+++.||-.|+++.
T Consensus 21 A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIV 89 (889)
T COG3280 21 ARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIV 89 (889)
T ss_pred HHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEec
Confidence 356678899999999988865543311101 124443 567789999999999999999984
No 237
>PLN02561 triosephosphate isomerase
Probab=21.93 E-value=2.2e+02 Score=26.63 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=37.6
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 85 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 85 i~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.+++|++|++.+=++-+=.|.. -|+-| +...+-+..+.++||.|++++-
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~---f~Etd----~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRAL---LGESN----EFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEECcccccCc---cCCCh----HHHHHHHHHHHHCcCEEEEEcC
Confidence 3789999999998888755542 23334 4567778899999999999996
No 238
>PRK15492 triosephosphate isomerase; Provisional
Probab=21.92 E-value=2e+02 Score=26.95 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=36.9
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 86 ~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.++|++|++.+=++-+=.|.. -|+-| +...+-+..+.++||.|++++-
T Consensus 88 ~mLkd~G~~~viiGHSERR~~---f~Etd----~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 88 LMLKEIGTQLVMIGHSERRHK---FGETD----QEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHcCCCEEEECccccccc---cCcch----HHHHHHHHHHHHCCCEEEEEcC
Confidence 789999999998888755542 23333 3456678899999999999996
No 239
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.87 E-value=1.8e+02 Score=25.45 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=41.3
Q ss_pred cCCccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeee
Q 020989 73 VACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 138 (319)
Q Consensus 73 ~a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivt 138 (319)
.+.|.+-.-...+..+..+.++.++++.++-+-... +.......+.+++.+++.|++++++
T Consensus 149 ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 149 IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQT-----DPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhcc-----ChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 344444444556777777788888887766544322 2223567889999999999998875
No 240
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.80 E-value=3.4e+02 Score=26.60 Aligned_cols=72 Identities=8% Similarity=-0.027 Sum_probs=50.1
Q ss_pred CCccccchHHHHHHHHHcCCCeeeec---c-cccccccCCCCCC-ChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcH
Q 020989 74 ACDEYHKYKEDVKLMADTGLDAYRFS---I-SWSRLIPNGRGPV-NPKGLQYYNNLINELISYGIQPHVTLHHLDLPQ 146 (319)
Q Consensus 74 a~~~y~~~~eDi~l~k~lG~~~~R~s---i-~Wsri~P~g~G~~-n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~ 146 (319)
.-+..+.++++++.+.++|++++.+. + .++.+.......+ +.+.++.|+...+.|.++|.+.. .+.||.-|.
T Consensus 169 pgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y-ei~~fa~~~ 245 (378)
T PRK05660 169 PDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQY-ETSAYAKPG 245 (378)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEe-ecccccCCC
Confidence 33556778899999999998877654 2 3444443211112 34568999999999999998875 667777664
No 241
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.79 E-value=2.7e+02 Score=27.81 Aligned_cols=69 Identities=9% Similarity=0.035 Sum_probs=48.2
Q ss_pred CCccccchHHHHHHHHHcCCCeeeecccccccccCCC----C-CCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 74 ACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR----G-PVNPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 74 a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~----G-~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
..+..+.++++++.+.++|++.+.+-. =.++|..+ . .-+.+..+.|+...+.|.++|.+. ..+.||..|
T Consensus 203 P~qt~e~~~~~l~~~~~l~~~~is~y~--L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~-yei~~far~ 276 (430)
T PRK08208 203 PGQTHASWMESLDQALVYRPEELFLYP--LYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ-TSMRMFRRN 276 (430)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcc--ccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE-EeecceecC
Confidence 345567788999999999998777663 12333310 1 123566889999999999999887 477777765
No 242
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=21.61 E-value=2.4e+02 Score=24.62 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=45.4
Q ss_pred cccchHHHHHHHHHcCCCeeeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC
Q 020989 77 EYHKYKEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD 143 (319)
Q Consensus 77 ~y~~~~eDi~l~k~lG~~~~R~si--~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~ 143 (319)
....|.+-++...+.|.+.+|+.- .|.. .. +.+.+..|+..+|.+.... |+..|+.|+
T Consensus 103 ~i~~~~~~~~~a~~~G~~~lRv~ge~~w~~-----~~--~~~~l~~yE~~ln~~~~~~--~~~~lC~Yd 162 (191)
T PF14417_consen 103 MIAFWRAALEQALAEGYRGLRVIGEMTWAL-----RS--GWEELLRYEALLNRLFAEH--PFTALCAYD 162 (191)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEechhhc-----cc--cHHHHHHHHHHHHHHhcCC--CEEEEeccc
Confidence 445667778888889999999986 4542 22 5778999999999999888 888888665
No 243
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=21.41 E-value=1.6e+02 Score=31.47 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=51.2
Q ss_pred CcCCccccchHHHH-HHHH--H--cCCCeeeeccc-----ccccccCC---CCCCCh-hhhHHHHHHHHHHHHcCCeeee
Q 020989 72 DVACDEYHKYKEDV-KLMA--D--TGLDAYRFSIS-----WSRLIPNG---RGPVNP-KGLQYYNNLINELISYGIQPHV 137 (319)
Q Consensus 72 ~~a~~~y~~~~eDi-~l~k--~--lG~~~~R~si~-----Wsri~P~g---~G~~n~-~~l~~yd~~id~l~~~GI~piv 137 (319)
..-.|+-+.++.+| +.|= . +.++.+.+-|- =+.-||.- +++.|. .+.+| .++.++++++=..-+
T Consensus 53 rLL~dY~e~~r~qILd~LFkp~~Gasl~~lKvEiGgD~nst~GtEPshm~~~~d~n~~RGye~--~L~~eAKkrNP~ikl 130 (669)
T PF02057_consen 53 RLLMDYPEPQRSQILDYLFKPNFGASLQILKVEIGGDANSTSGTEPSHMHSEDDENYFRGYEW--WLMAEAKKRNPNIKL 130 (669)
T ss_dssp TTTTT--TTHHHHHHHHHHSTTTSS--SEEEEEE--SSB-SSSB---S-SSTT---S-SSSHH--HHHHHHHHH-TT-EE
T ss_pred hhhccCCchhHHHHHHHHhCCCCCceeeEEEEEecCCCCCCCCCCCcccccccccccccChhh--hhHHHHHhhCCCCeE
Confidence 34445555555443 4442 2 33666766652 22345541 122232 22222 577888988877777
Q ss_pred eecCCCCcHHHHHhhCCCCCh----h-hHHHHHHHHHHHHHHhCCCcceEEecCCCc
Q 020989 138 TLHHLDLPQALEDEYGGWINR----M-IVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 138 tL~H~~~P~wl~~~ygg~~~~----~-~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~ 189 (319)
...-|..|.|+. +||..+ . .+....++..-+.+.+|=.++|--++||=.
T Consensus 131 ~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~ 184 (669)
T PF02057_consen 131 YGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERG 184 (669)
T ss_dssp EEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS-
T ss_pred EEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccC
Confidence 888899999995 454332 2 233334555566788887888888899943
No 244
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.35 E-value=4.3e+02 Score=24.40 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=46.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCc
Q 020989 110 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 110 ~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~ 189 (319)
+|.+| ++-+++.|+.+.+.|+..++.+.+-+ -...-+.+...+..+.+.+.-++++....-...++
T Consensus 15 dg~iD---~~~~~~~i~~l~~~Gv~gl~v~GstG-----------E~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 15 DGSVD---FDALERLIEFQIENGTDGLVVCGTTG-----------ESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred CCCcC---HHHHHHHHHHHHHcCCCEEEECCCCc-----------chhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc
Confidence 58899 55678999999999999998876422 11112346677777777777777887776555444
No 245
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.32 E-value=2.6e+02 Score=28.09 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=49.6
Q ss_pred CccccchHHHHHHHHHcCCCeeeec----ccccc-cccC-CC-CCCC-hhhhHHHHHHHHHHHHcCCeeeeeecCCCCcH
Q 020989 75 CDEYHKYKEDVKLMADTGLDAYRFS----ISWSR-LIPN-GR-GPVN-PKGLQYYNNLINELISYGIQPHVTLHHLDLPQ 146 (319)
Q Consensus 75 ~~~y~~~~eDi~l~k~lG~~~~R~s----i~Wsr-i~P~-g~-G~~n-~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~ 146 (319)
-+..+.++++++.+.++|++.+.+- ..|.+ .+.. +. ..++ .+.++.|...++.|.++|-+++ .+.||..|.
T Consensus 215 gqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~~-~~~~far~~ 293 (453)
T PRK13347 215 HQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVPI-GLDHFALPD 293 (453)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEEE-eccceeCCC
Confidence 3456778999999999999977653 24522 1110 11 1122 4568899999999999999884 888888773
No 246
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=21.27 E-value=1.3e+02 Score=21.73 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHHHH-HcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHH
Q 020989 122 NNLINELI-SYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYA 168 (319)
Q Consensus 122 d~~id~l~-~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya 168 (319)
+++++.|. ..||+|.+|.. .|-. ..+++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~~-----VW~~------LekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTRF-----VWYL------LEKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHHH-----HHHH------HHHHHHHHHHHHh
Confidence 56776665 48999998875 5543 2356677887773
No 247
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=21.26 E-value=3.2e+02 Score=26.17 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=36.4
Q ss_pred chHHHHHHHHHcCCCeeeeccc-ccc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 80 KYKEDVKLMADTGLDAYRFSIS-WSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 80 ~~~eDi~l~k~lG~~~~R~si~-Wsr-i~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
.-++-++.+++.|++.+++|++ -.. +.-.-.|.. ..++..-+.|+.++++|+.+.+..
T Consensus 93 l~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~--g~f~~v~~~i~~l~~~g~~v~v~~ 152 (358)
T TIGR02109 93 LTEARLDALADAGLDHVQLSFQGVDEALADRIAGYK--NAFEQKLAMARAVKAAGLPLTLNF 152 (358)
T ss_pred CCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCc--cHHHHHHHHHHHHHhCCCceEEEE
Confidence 3366788899999999999984 211 111101211 135556677788999999866544
No 248
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=21.21 E-value=1.6e+02 Score=25.77 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=45.4
Q ss_pred CcCCccccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeee
Q 020989 72 DVACDEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 139 (319)
Q Consensus 72 ~~a~~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL 139 (319)
..+.|.+-.-..+++.+.++.++.++++-++-+-... |...-...+.++..+++.|++++++=
T Consensus 147 ~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 147 RIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET-----DPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred eEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc-----ChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 3566666677778888888888888888765443322 23345678889999999999988753
No 249
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=21.16 E-value=5.4e+02 Score=27.25 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eeeeecCCCCcHHHHHhh---------
Q 020989 83 EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHLDLPQALEDEY--------- 152 (319)
Q Consensus 83 eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~-pivtL~H~~~P~wl~~~y--------- 152 (319)
+.+..+.++|...+|+.+. +.+..+-..++.+.|++.|+. |++.=.||+.-..+...-
T Consensus 49 ~Qi~~L~~aGceiVRvtvp------------~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRINP 116 (606)
T PRK00694 49 RQICALQEWGCDIVRVTVQ------------GLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHVADFVDKVRINP 116 (606)
T ss_pred HHHHHHHHcCCCEEEEcCC------------CHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHHHhcCceEECC
Q ss_pred CCCCChhh-------------------HHHHHHHHHHHHHH
Q 020989 153 GGWINRMI-------------------VKDFTAYADVCFRE 174 (319)
Q Consensus 153 gg~~~~~~-------------------~~~F~~ya~~v~~r 174 (319)
|.+.++.- .+.|...++.|-++
T Consensus 117 GNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~ 157 (606)
T PRK00694 117 GNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRL 157 (606)
T ss_pred cccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHC
No 250
>PRK12465 xylose isomerase; Provisional
Probab=20.93 E-value=8.3e+02 Score=24.87 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=46.7
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHH----HHHcCCeeeee-ecCCCCcHHHHHhhCCC
Q 020989 81 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINE----LISYGIQPHVT-LHHLDLPQALEDEYGGW 155 (319)
Q Consensus 81 ~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~----l~~~GI~pivt-L~H~~~P~wl~~~ygg~ 155 (319)
.+.-++.+.+||+..|-|- -..|.|+| .-..+.-+.++++++. +.+.||+.... ..=|..|.... |+.
T Consensus 91 ~daaFEf~~kLG~~~~~FH--D~D~~Peg--~s~~E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs~prf~~---GA~ 163 (445)
T PRK12465 91 SDAAFEFFTKLGVPYYCFH--DIDLAPDA--DDIGEYESNLKHMVGIAKQRQADTGIKLLWGTANLFSHPRYMN---GAS 163 (445)
T ss_pred HHHHHHHHHHhCCCeeecc--ccccCCCC--CCHHHHHHHHHHHHHHHHHHhhhhCceeeeeccccccCccccC---CcC
Confidence 3444788899999987664 34588884 2223333445666654 55789997654 45578887652 888
Q ss_pred CChh
Q 020989 156 INRM 159 (319)
Q Consensus 156 ~~~~ 159 (319)
+||+
T Consensus 164 TnPD 167 (445)
T PRK12465 164 TNPD 167 (445)
T ss_pred CCCC
Confidence 8875
No 251
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.54 E-value=2.2e+02 Score=26.73 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=38.2
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 86 ~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
.+++++|++.+=++-|=.|.. -++.| +.-.+-+..++++|++|+++.-
T Consensus 82 ~mL~d~G~~~viiGHSERR~~---~~E~d----~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 82 EMLKDLGAKYVLIGHSERRLY---FGETD----ELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHcCCCEEEECccccccc---cccch----HHHHHHHHHHHHCCCeEEEEcC
Confidence 789999999999998866653 23334 4567888999999999999996
No 252
>PRK14566 triosephosphate isomerase; Provisional
Probab=20.54 E-value=2.2e+02 Score=26.78 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 86 ~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
+++|++|++.+=++-|=.|.. -++-| +...+-+..+.++||+|++++-
T Consensus 89 ~mL~d~G~~~viiGHSERR~~---f~Etd----~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 89 QMLKDAGCRYVIIGHSERRRM---YGETS----NIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHcCCCEEEECcccccCC---CCcCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 789999999998888755532 22333 3456778899999999999996
No 253
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=20.44 E-value=2.6e+02 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeec
Q 020989 86 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 140 (319)
Q Consensus 86 ~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~ 140 (319)
+++|++|++.+=++-|=.|-. -|+- -+...+-+..+.++||+|++++-
T Consensus 78 ~mL~d~G~~~viiGHSERR~~---f~Et----~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 78 EMLKDAGAKYVIIGHSERRQY---FGET----DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHcCCCEEEeCcccccCc---CCCC----cHHHHHHHHHHHHCCCEEEEEeC
Confidence 789999999998888644432 1122 25667888999999999999996
No 254
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.44 E-value=2.6e+02 Score=27.07 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHcCCCeeeecccccccccCCCC---------CC-ChhhhHHHHHHHHHHHHcCCeeeeeecCCCCc
Q 020989 76 DEYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG---------PV-NPKGLQYYNNLINELISYGIQPHVTLHHLDLP 145 (319)
Q Consensus 76 ~~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G---------~~-n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P 145 (319)
+..+.++++++.+.++|++.+.+.. +.|. +| .+ +.+..+.|+...+.|.++|.... .+.||..|
T Consensus 164 qt~~~~~~~l~~~~~l~~~~is~y~----l~~~-~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y-ei~~fa~~ 237 (360)
T TIGR00539 164 QTLNSLKEELKLAKELPINHLSAYA----LSVE-PNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQY-EVSNYAKA 237 (360)
T ss_pred CCHHHHHHHHHHHHccCCCEEEeec----ceEc-CCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCcee-ehhhhcCC
Confidence 4456677888888888887665542 2222 11 11 23457788888888888887643 55555544
No 255
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.38 E-value=1.7e+02 Score=24.89 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=33.1
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeee
Q 020989 85 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 137 (319)
Q Consensus 85 i~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~piv 137 (319)
++.++++|++.+=+.......... . -...+++.+.++++||++..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~-------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K-------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H-------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c-------hHHHHHHHHHHHHcCCeEEE
Confidence 478899999998887754443322 1 35678999999999999554
No 256
>PLN02808 alpha-galactosidase
Probab=20.33 E-value=2.8e+02 Score=27.67 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCC
Q 020989 77 EYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLD 143 (319)
Q Consensus 77 ~y~~~~eDi~l~k~lG~~~~R~si~Wsri~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~ 143 (319)
.+..++.|.+.+++.||+.+.+.-.-. ++. ..-..|..+-+.|.+-|-..++.|+.|+
T Consensus 131 s~~~e~~DA~~fA~WGvDylK~D~C~~------~~~---~~~~~y~~m~~AL~~tGRpi~~slc~wg 188 (386)
T PLN02808 131 SLGHEEQDAKTFASWGIDYLKYDNCEN------TGT---SPQERYPKMSKALLNSGRPIFFSLCEWG 188 (386)
T ss_pred chHHHHHHHHHHHHhCCCEEeecCcCC------CCc---cHHHHHHHHHHHHHHhCCCeEEEecCCC
Confidence 367889999999999999999887522 111 1245799999999999977777888765
No 257
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=20.04 E-value=2e+02 Score=28.39 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCeeeecc-cccc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcH
Q 020989 82 KEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQ 146 (319)
Q Consensus 82 ~eDi~l~k~lG~~~~R~si-~Wsr-i~P~g~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~ 146 (319)
+++++.++++|+|.+-+++ +=+. +... -|+... .+-..+.|+.+++.+..+-++|. +++|.
T Consensus 122 ~e~L~~l~~~GvnrisiGvQS~~~~~L~~-l~R~~~--~~~~~~~i~~~~~~~~~v~~dlI-~GlPg 184 (394)
T PRK08898 122 AEKFAQFRASGVNRLSIGIQSFNDAHLKA-LGRIHD--GAEARAAIEIAAKHFDNFNLDLM-YALPG 184 (394)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHH-hCCCCC--HHHHHHHHHHHHHhCCceEEEEE-cCCCC
Confidence 5889999999999888877 3222 2211 233321 34566778888887777777765 46664
No 258
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.00 E-value=5.3e+02 Score=23.66 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=46.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeeeeecCCCCcHHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCCcceEEecCCCc
Q 020989 110 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHLDLPQALEDEYGGWINRMIVKDFTAYADVCFREFGDRVSYWTTVNEPN 189 (319)
Q Consensus 110 ~G~~n~~~l~~yd~~id~l~~~GI~pivtL~H~~~P~wl~~~ygg~~~~~~~~~F~~ya~~v~~r~gd~V~~W~t~NEP~ 189 (319)
+|.+| ++-+++.|+.+.+.|+.-++.+-+-+- +-.. +.+...+.++.+.+.-+++++...-...++
T Consensus 12 dg~iD---~~~~~~~i~~l~~~Gv~gi~~~GstGE--------~~~l---s~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 77 (281)
T cd00408 12 DGEVD---LDALRRLVEFLIEAGVDGLVVLGTTGE--------APTL---TDEERKEVIEAVVEAVAGRVPVIAGVGANS 77 (281)
T ss_pred CCCcC---HHHHHHHHHHHHHcCCCEEEECCCCcc--------cccC---CHHHHHHHHHHHHHHhCCCCeEEEecCCcc
Confidence 68899 666799999999999999887764220 0112 235667777777777777888776666555
Q ss_pred c
Q 020989 190 G 190 (319)
Q Consensus 190 ~ 190 (319)
+
T Consensus 78 ~ 78 (281)
T cd00408 78 T 78 (281)
T ss_pred H
Confidence 4
Done!