Query 020992
Match_columns 319
No_of_seqs 114 out of 126
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06161 DUF975: Protein of un 97.6 0.0031 6.7E-08 58.0 15.4 67 222-306 177-243 (243)
2 PF10110 GPDPase_memb: Membran 96.7 0.0087 1.9E-07 51.5 8.5 56 198-254 90-145 (149)
3 PF06790 UPF0259: Uncharacteri 95.3 0.35 7.6E-06 45.4 12.5 34 213-247 160-193 (248)
4 PRK02868 hypothetical protein; 91.5 12 0.00027 35.1 18.0 32 219-251 163-194 (245)
5 PF10110 GPDPase_memb: Membran 28.4 3.6E+02 0.0078 22.7 11.8 51 9-65 17-71 (149)
6 PF00558 Vpu: Vpu protein; In 25.8 68 0.0015 25.1 2.6 28 286-313 14-41 (81)
7 PF15069 FAM163: FAM163 family 20.4 1.6E+02 0.0035 25.5 4.1 19 293-311 26-44 (143)
8 PF04341 DUF485: Protein of un 18.1 2E+02 0.0043 22.5 3.9 25 234-258 8-32 (91)
9 PF04544 Herpes_UL20: Herpesvi 16.5 5.8E+02 0.013 22.9 6.9 40 25-64 86-127 (179)
10 KOG1590 Uncharacterized conser 15.8 1.9E+02 0.0042 24.4 3.4 44 207-262 30-73 (132)
No 1
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=97.58 E-value=0.0031 Score=58.04 Aligned_cols=67 Identities=24% Similarity=0.170 Sum_probs=48.2
Q ss_pred CcchhhhhhhcchhhccCCceehhHHHHHHHHHHHHHHHhhhcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020992 222 QNKHGDVALGVSAYISRGSRKRGFLIMLVFFAWSFGLRLSSLCVGWQKGNVVIEVILAQACLDCLGSVMKWVAFMIYFYD 301 (319)
Q Consensus 222 ~~~~G~~Al~ks~~L~kG~~~~g~~l~l~f~~~~~~l~~~~~~~~~~~~~~~i~~~~v~v~L~~~v~L~~~v~~tVfY~~ 301 (319)
||.-..+|+++|+++|||++++-+.+.+.|..|...--..+ |+. . --+.-+--++++.||-+
T Consensus 177 ~~~~~~~al~~S~~lmkg~k~~~f~l~Lsfigw~~L~~~t~----------gi~--~------l~~~pY~~~~~a~fY~~ 238 (243)
T PF06161_consen 177 PELGAFEALKRSRKLMKGNKWRLFLLDLSFIGWYILGLLTF----------GIG--L------LWVIPYINTAQAEFYEE 238 (243)
T ss_pred cCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHH--H------HHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999998887733221111 111 1 12236788999999999
Q ss_pred ccccc
Q 020992 302 CKKRF 306 (319)
Q Consensus 302 CKs~h 306 (319)
.|+++
T Consensus 239 l~~~~ 243 (243)
T PF06161_consen 239 LRKRK 243 (243)
T ss_pred HHhcC
Confidence 99874
No 2
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=96.74 E-value=0.0087 Score=51.45 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhheeeeEEEeecCcchhhhhhhcchhhccCCceehhHHHHHHHHH
Q 020992 198 VALFTKYIEWSAVWNTGIVISILEQNKHGDVALGVSAYISRGSRKRGFLIMLVFFAW 254 (319)
Q Consensus 198 ~~~~~~~vy~s~vw~la~VVSVlE~~~~G~~Al~ks~~L~kG~~~~g~~l~l~f~~~ 254 (319)
.++.....|+++=|..+.-.=++|| ..-.+|+++||+++||+.++-+...+...+.
T Consensus 90 ~~~~~~~~~l~~R~if~lp~~vle~-~~~~~A~k~Sw~ltk~~~~~~~~~~l~~~~~ 145 (149)
T PF10110_consen 90 LLLYLILFYLNIRLIFVLPLIVLEN-KSFKEALKESWQLTKGRFWRILGRLLLLFII 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3444445577888888888889999 8888999999999999998876665544443
No 3
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=95.31 E-value=0.35 Score=45.43 Aligned_cols=34 Identities=21% Similarity=0.038 Sum_probs=23.3
Q ss_pred eeeEEEeecCcchhhhhhhcchhhccCCceehhHH
Q 020992 213 TGIVISILEQNKHGDVALGVSAYISRGSRKRGFLI 247 (319)
Q Consensus 213 la~VVSVlE~~~~G~~Al~ks~~L~kG~~~~g~~l 247 (319)
+|-++-|.|+ .-=.+|||+|+++.+|+.+.-...
T Consensus 160 lap~ilv~ek-~~i~~Amr~S~~Lt~~~~~ii~p~ 193 (248)
T PF06790_consen 160 LAPIILVLEK-KGIFDAMRASWKLTFGNFRIIIPA 193 (248)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444565 555889999999999987654433
No 4
>PRK02868 hypothetical protein; Provisional
Probab=91.49 E-value=12 Score=35.09 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=23.1
Q ss_pred eecCcchhhhhhhcchhhccCCceehhHHHHHH
Q 020992 219 ILEQNKHGDVALGVSAYISRGSRKRGFLIMLVF 251 (319)
Q Consensus 219 VlE~~~~G~~Al~ks~~L~kG~~~~g~~l~l~f 251 (319)
|.|+ .-=.+|+|.||++.+|+.|.-..++..-
T Consensus 163 v~ek-~~v~~Air~S~~l~~~~~~~i~p~il~W 194 (245)
T PRK02868 163 VTEK-MGIFASMRASMRLAWANMRLVAPAVLLW 194 (245)
T ss_pred HHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466 5446799999999999987766544433
No 5
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=28.40 E-value=3.6e+02 Score=22.70 Aligned_cols=51 Identities=25% Similarity=0.432 Sum_probs=33.4
Q ss_pred HHhhcCcHHHHHHHhhhccccC--ch-hHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 020992 9 AMKEKLEFVGIIKEALKIPIKN--PK-FIFTIL-LTSFPLFCSLCLHETMFQRALIESLRS 65 (319)
Q Consensus 9 ~~~~~l~~~~iLkEs~~I~~~n--~~-~f~~i~-l~~lpl~~~l~l~~~l~~~pL~~~i~~ 65 (319)
.-+++.+..++++++.+-.++= ++ ++.... ++++|. .|..+..++.+++++
T Consensus 17 ~~~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP~------~~~~~~s~ll~~l~I 71 (149)
T PF10110_consen 17 LRGEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILPF------ANLGFSSSLLSKLKI 71 (149)
T ss_pred HcCCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH------HHHHHHHHHHccCcC
Confidence 4566789999999999877653 33 333332 234444 477777888877774
No 6
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.80 E-value=68 Score=25.14 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhhhcccccccccccC
Q 020992 286 LGSVMKWVAFMIYFYDCKKRFIEKKFDG 313 (319)
Q Consensus 286 ~v~L~~~v~~tVfY~~CKs~h~E~~iD~ 313 (319)
+.-....++=|..|-+||+-..|++||+
T Consensus 14 v~~iiaIvvW~iv~ieYrk~~rqrkId~ 41 (81)
T PF00558_consen 14 VALIIAIVVWTIVYIEYRKIKRQRKIDR 41 (81)
T ss_dssp HHHHHHHHHHHHH------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344577777888999999988888886
No 7
>PF15069 FAM163: FAM163 family
Probab=20.43 E-value=1.6e+02 Score=25.47 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=12.5
Q ss_pred HHHHhhhhhcccccccccc
Q 020992 293 VAFMIYFYDCKKRFIEKKF 311 (319)
Q Consensus 293 v~~tVfY~~CKs~h~E~~i 311 (319)
+-+=-.||-||+...|+..
T Consensus 26 CYCRLQYYCCKK~~se~~~ 44 (143)
T PF15069_consen 26 CYCRLQYYCCKKNESEEDE 44 (143)
T ss_pred HHHhhHHHHhhccCCcccc
Confidence 3344678899997555443
No 8
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=18.07 E-value=2e+02 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=17.7
Q ss_pred hhhccCCceehhHHHHHHHHHHHHH
Q 020992 234 AYISRGSRKRGFLIMLVFFAWSFGL 258 (319)
Q Consensus 234 ~~L~kG~~~~g~~l~l~f~~~~~~l 258 (319)
.+|.|-|++.++.+..++.+...++
T Consensus 8 ~~L~r~r~r~~~~l~~i~l~~y~~~ 32 (91)
T PF04341_consen 8 QELVRRRRRLAWPLSAIFLVLYFGF 32 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888887777777666655
No 9
>PF04544 Herpes_UL20: Herpesvirus egress protein UL20; InterPro: IPR007629 UL20 is predicted to be a transmembrane protein with multiple membrane spans. It is involved in the trans-cellular transport of enveloped virions, and is therefore important for viral egress. However, UL20 operates in different cellular compartments and different stages of egress in Suid herpesvirus 1 (Pseudorabies virus) and herpes simplex virus. This is thought to be due to differences in egress pathways between these two viruses [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=16.53 E-value=5.8e+02 Score=22.89 Aligned_cols=40 Identities=15% Similarity=0.360 Sum_probs=26.1
Q ss_pred hccccCch-hHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHhh
Q 020992 25 KIPIKNPK-FIFTILLTSFPLFCSLCLHETMFQRA-LIESLR 64 (319)
Q Consensus 25 ~I~~~n~~-~f~~i~l~~lpl~~~l~l~~~l~~~p-L~~~i~ 64 (319)
++|.+++- ++.-+.....|..+....++..|++| ++.++.
T Consensus 86 rLPL~~~qq~~~g~~~~~~~i~f~~~a~~~~F~d~~lf~~v~ 127 (179)
T PF04544_consen 86 RLPLSTPQQWILGALCGGRAIYFLVIAYHEIFVDSELFFRVF 127 (179)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhCChHHHHHHh
Confidence 57777765 44444446777766666667777776 666665
No 10
>KOG1590 consensus Uncharacterized conserved protein [Function unknown]
Probab=15.82 E-value=1.9e+02 Score=24.38 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=31.1
Q ss_pred HHhhheeeeEEEeecCcchhhhhhhcchhhccCCceehhHHHHHHHHHHHHHHHhh
Q 020992 207 WSAVWNTGIVISILEQNKHGDVALGVSAYISRGSRKRGFLIMLVFFAWSFGLRLSS 262 (319)
Q Consensus 207 ~s~vw~la~VVSVlE~~~~G~~Al~ks~~L~kG~~~~g~~l~l~f~~~~~~l~~~~ 262 (319)
|.=|-|-|+.++-+-| |+|+-++|.|+.-.++.+ -++..+|.+.
T Consensus 30 WGPvaNwGlpiAal~D-------mkK~P~~ISG~MT~AL~~-----YS~vFMRfA~ 73 (132)
T KOG1590|consen 30 WGPVANWGLPIAALVD-------MKKSPEMISGRMTSALCL-----YSAVFMRFAW 73 (132)
T ss_pred ccchhhccchHHHHHh-------ccCChhhccccchHHHHH-----HHHHHHHHHH
Confidence 5555566666666656 999999999999887765 2445566554
Done!