Query 020992
Match_columns 319
No_of_seqs 114 out of 126
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ews_A RK-1 defensin, alpha-de 19.4 26 0.0009 21.0 0.2 16 300-316 3-20 (32)
2 2ww9_B Protein transport prote 10.0 75 0.0026 23.7 0.5 28 4-31 9-40 (80)
3 2zxe_G FXYD10, phospholemman-l 6.1 3.5E+02 0.012 19.7 2.6 27 282-308 23-49 (74)
4 1zoq_C CREB-binding protein, i 5.8 2E+02 0.0067 19.2 0.9 17 21-37 20-36 (47)
5 3arc_M Photosystem II reaction 5.0 6.9E+02 0.024 15.7 3.3 18 33-50 8-25 (36)
6 3c5t_B Exendin-4, exenatide; l 4.7 1.7E+02 0.0059 17.9 0.1 11 235-245 17-27 (31)
7 2l9u_A Receptor tyrosine-prote 4.6 7.4E+02 0.025 15.5 3.4 30 279-308 9-38 (40)
8 4b6m_A Tubulin-specific chaper 4.5 1.8E+02 0.0061 21.8 0.1 11 297-307 56-66 (84)
9 1whk_A 1700024K14RIK, riken cD 4.4 1.9E+02 0.0064 21.9 0.1 11 297-307 62-72 (91)
10 1kbh_B CREB-binding protein, n 4.1 3.2E+02 0.011 19.0 1.2 16 22-37 28-43 (59)
No 1
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=19.40 E-value=26 Score=21.04 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=12.6
Q ss_pred hhcccccc--cccccCCCC
Q 020992 300 YDCKKRFI--EKKFDGSAE 316 (319)
Q Consensus 300 ~~CKs~h~--E~~iD~~~~ 316 (319)
+.||+|.. | -||++.|
T Consensus 3 csckkycdpwe-vidgscg 20 (32)
T 1ews_A 3 CSCKKYCDPWE-VIDGSCG 20 (32)
T ss_dssp SEEESSCCTTE-EEEECCS
T ss_pred cccccccChhh-eeccccc
Confidence 57999975 7 8998865
No 2
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=10.05 E-value=75 Score=23.72 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=14.0
Q ss_pred CchHHHHhhc----CcHHHHHHHhhhccccCc
Q 020992 4 DDSRIAMKEK----LEFVGIIKEALKIPIKNP 31 (319)
Q Consensus 4 ~~~~~~~~~~----l~~~~iLkEs~~I~~~n~ 31 (319)
+|+..||.|. -..-+++||+.+++.+.+
T Consensus 9 ~~~~~~~d~~~~~~e~~~~f~kd~~rvlk~~~ 40 (80)
T 2ww9_B 9 EEKKQSNNQVEKLVEAPVEFVREGTQFLAKCK 40 (80)
T ss_dssp ------------CCHHHHHHHHHHHHHHHSCC
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666666554 255679999999998764
No 3
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=6.11 E-value=3.5e+02 Score=19.74 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccccc
Q 020992 282 CLDCLGSVMKWVAFMIYFYDCKKRFIE 308 (319)
Q Consensus 282 ~L~~~v~L~~~v~~tVfY~~CKs~h~E 308 (319)
+|.+++.||-.-+..++.--||-..++
T Consensus 23 GLifA~vLfi~GI~iilS~kcrCk~~q 49 (74)
T 2zxe_G 23 GLIVAAVLCVIGIIILLAGKCRCKFNQ 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-------
T ss_pred cchhHHHHHHHHHHHHHcCccccCCCC
Confidence 344444455555555566566555444
No 4
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=5.78 E-value=2e+02 Score=19.18 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=12.3
Q ss_pred HHhhhccccCchhHHHH
Q 020992 21 KEALKIPIKNPKFIFTI 37 (319)
Q Consensus 21 kEs~~I~~~n~~~f~~i 37 (319)
.+-+.|+++||.+|+..
T Consensus 20 qqvl~ILksnPqLMAAf 36 (47)
T 1zoq_C 20 QQVLNILKSNPQLMAAF 36 (47)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHH
Confidence 35677888899887653
No 5
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=5.01 E-value=6.9e+02 Score=15.68 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 020992 33 FIFTILLTSFPLFCSLCL 50 (319)
Q Consensus 33 ~f~~i~l~~lpl~~~l~l 50 (319)
|.+....+.+|-.+++++
T Consensus 8 fiAt~Lfi~iPt~FLlil 25 (36)
T 3arc_M 8 LIATALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555567787654443
No 6
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=4.66 E-value=1.7e+02 Score=17.87 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=5.7
Q ss_pred hhccCCceehh
Q 020992 235 YISRGSRKRGF 245 (319)
Q Consensus 235 ~L~kG~~~~g~ 245 (319)
+|++|++++|+
T Consensus 17 WL~ngk~~~~~ 27 (31)
T 3c5t_B 17 WLKNGGPSSGA 27 (31)
T ss_dssp HHHTTGGGC--
T ss_pred HHHhCCCCCCC
Confidence 46666666553
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=4.57 E-value=7.4e+02 Score=15.48 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 020992 279 AQACLDCLGSVMKWVAFMIYFYDCKKRFIE 308 (319)
Q Consensus 279 v~v~L~~~v~L~~~v~~tVfY~~CKs~h~E 308 (319)
......+++..|-..-.|-.|..-+..||.
T Consensus 9 alt~i~gl~vif~~lg~tflywrgrrhhhh 38 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGRRHHHH 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHhCceeEEEcccccccc
Confidence 333444555667777888889888777653
No 8
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=4.47 E-value=1.8e+02 Score=21.76 Aligned_cols=11 Identities=9% Similarity=0.516 Sum_probs=7.9
Q ss_pred hhhhhcccccc
Q 020992 297 IYFYDCKKRFI 307 (319)
Q Consensus 297 VfY~~CKs~h~ 307 (319)
+=||+|+..|.
T Consensus 56 ~rYF~C~~~~G 66 (84)
T 4b6m_A 56 TRVFQCQPNYG 66 (84)
T ss_dssp EESSCCCTTSE
T ss_pred EEEEecCCCeE
Confidence 45888887765
No 9
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=4.41 E-value=1.9e+02 Score=21.89 Aligned_cols=11 Identities=18% Similarity=0.645 Sum_probs=7.7
Q ss_pred hhhhhcccccc
Q 020992 297 IYFYDCKKRFI 307 (319)
Q Consensus 297 VfY~~CKs~h~ 307 (319)
+=||+|+..|.
T Consensus 62 ~rYF~C~~~~G 72 (91)
T 1whk_A 62 KRYFTCKPNYG 72 (91)
T ss_dssp EECCCCSTTCC
T ss_pred EEEeecCCCeE
Confidence 45888887654
No 10
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=4.14 E-value=3.2e+02 Score=18.99 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=11.0
Q ss_pred HhhhccccCchhHHHH
Q 020992 22 EALKIPIKNPKFIFTI 37 (319)
Q Consensus 22 Es~~I~~~n~~~f~~i 37 (319)
+-+.|+++||.+|+.+
T Consensus 28 qvl~ILksNPqLMAAf 43 (59)
T 1kbh_B 28 QVLNILKSNPQLMAAF 43 (59)
T ss_dssp HHHHHHTTSHHHHHHH
T ss_pred HHHHHHHhCHHHHHHH
Confidence 3466778888877643
Done!