Query 020992
Match_columns 319
No_of_seqs 114 out of 126
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 11:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020992.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020992hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ewsa_ g.9.1.1 (A:) Alpha-def 19.4 12 0.0009 21.0 0.2 16 300-316 3-20 (32)
2 d2hqha1 b.34.10.1 (A:26-97) Dy 8.3 38 0.0028 22.9 0.1 10 298-307 52-61 (72)
3 d2cp0a1 b.34.10.1 (A:7-89) CLI 8.1 39 0.0028 23.5 0.1 10 298-307 60-69 (83)
4 d2e3ha1 b.34.10.1 (A:212-282) 7.9 40 0.0029 22.7 0.0 10 298-307 50-59 (71)
5 d1whla_ b.34.10.1 (A:) Cylindr 6.9 47 0.0034 23.7 -0.0 11 297-307 67-77 (95)
6 d2axtm1 f.23.35.1 (M:1-36) Pho 6.5 2.3E+02 0.017 16.2 3.1 19 33-51 8-26 (36)
7 d1whja_ b.34.10.1 (A:) Restin- 6.1 55 0.004 23.6 -0.0 11 297-307 73-83 (102)
8 d1whka_ b.34.10.1 (A:) Restin- 6.1 58 0.0042 23.0 0.1 11 297-307 62-72 (91)
9 d1qvwa_ c.23.16.2 (A:) Hypothe 5.6 90 0.0065 25.3 1.1 29 214-245 130-164 (236)
10 d2e3ia1 b.34.10.1 (A:58-128) R 5.6 64 0.0046 21.7 0.1 10 298-307 50-59 (71)
No 1
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=19.40 E-value=12 Score=21.04 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=12.6
Q ss_pred hhcccccc--cccccCCCC
Q 020992 300 YDCKKRFI--EKKFDGSAE 316 (319)
Q Consensus 300 ~~CKs~h~--E~~iD~~~~ 316 (319)
+.||+|.. | -||++.|
T Consensus 3 csckkycdpwe-vidgscg 20 (32)
T d1ewsa_ 3 CSCKKYCDPWE-VIDGSCG 20 (32)
T ss_dssp SEEESSCCTTE-EEEECCS
T ss_pred cccccccChhh-eeccccc
Confidence 57999975 7 8998865
No 2
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.27 E-value=38 Score=22.94 Aligned_cols=10 Identities=10% Similarity=0.524 Sum_probs=7.2
Q ss_pred hhhhcccccc
Q 020992 298 YFYDCKKRFI 307 (319)
Q Consensus 298 fY~~CKs~h~ 307 (319)
=||+|+..|.
T Consensus 52 ~YF~C~~~~G 61 (72)
T d2hqha1 52 KYFTCDEGHG 61 (72)
T ss_dssp ESSCCCTTTE
T ss_pred EEEecCCCcE
Confidence 3788887765
No 3
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.10 E-value=39 Score=23.52 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=7.8
Q ss_pred hhhhcccccc
Q 020992 298 YFYDCKKRFI 307 (319)
Q Consensus 298 fY~~CKs~h~ 307 (319)
=||+|+..|.
T Consensus 60 rYF~C~~~~G 69 (83)
T d2cp0a1 60 RYFICPPKQG 69 (83)
T ss_dssp ECCCCSSSCE
T ss_pred EEeecCCCce
Confidence 3889988776
No 4
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.88 E-value=40 Score=22.70 Aligned_cols=10 Identities=10% Similarity=0.833 Sum_probs=7.5
Q ss_pred hhhhcccccc
Q 020992 298 YFYDCKKRFI 307 (319)
Q Consensus 298 fY~~CKs~h~ 307 (319)
-||+|+..|.
T Consensus 50 ~YF~c~~~~G 59 (71)
T d2e3ha1 50 RYFQCQPKYG 59 (71)
T ss_dssp ESCCCCTTCE
T ss_pred EEEecCCCCE
Confidence 4888887775
No 5
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.89 E-value=47 Score=23.68 Aligned_cols=11 Identities=9% Similarity=0.359 Sum_probs=8.4
Q ss_pred hhhhhcccccc
Q 020992 297 IYFYDCKKRFI 307 (319)
Q Consensus 297 VfY~~CKs~h~ 307 (319)
+-||+|+..|.
T Consensus 67 ~rYF~C~~~~G 77 (95)
T d1whla_ 67 KQLFQCDEDCG 77 (95)
T ss_dssp EECCCCCTTTE
T ss_pred EEEEecCCCcE
Confidence 56889987764
No 6
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.54 E-value=2.3e+02 Score=16.25 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 020992 33 FIFTILLTSFPLFCSLCLH 51 (319)
Q Consensus 33 ~f~~i~l~~lpl~~~l~l~ 51 (319)
|.+...+.++|..++++++
T Consensus 8 ~iAt~LFilvPt~FLliLy 26 (36)
T d2axtm1 8 LIATALFVLVPSVFLIILY 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4455555677776555543
No 7
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.10 E-value=55 Score=23.58 Aligned_cols=11 Identities=9% Similarity=0.784 Sum_probs=8.5
Q ss_pred hhhhhcccccc
Q 020992 297 IYFYDCKKRFI 307 (319)
Q Consensus 297 VfY~~CKs~h~ 307 (319)
+=||+||..|.
T Consensus 73 ~~YF~C~~~~G 83 (102)
T d1whja_ 73 VQYFKCAPKYG 83 (102)
T ss_dssp EECCCCCTTTE
T ss_pred EEEeecCCCcE
Confidence 44899998875
No 8
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.09 E-value=58 Score=23.00 Aligned_cols=11 Identities=18% Similarity=0.645 Sum_probs=8.6
Q ss_pred hhhhhcccccc
Q 020992 297 IYFYDCKKRFI 307 (319)
Q Consensus 297 VfY~~CKs~h~ 307 (319)
+-||+|+..|.
T Consensus 62 ~~YF~C~~~~G 72 (91)
T d1whka_ 62 KRYFTCKPNYG 72 (91)
T ss_dssp EECCCCSTTCC
T ss_pred EEEeecCCCce
Confidence 45899998875
No 9
>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.59 E-value=90 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=21.4
Q ss_pred eeEEEeecCcchhhhhhhcch------hhccCCceehh
Q 020992 214 GIVISILEQNKHGDVALGVSA------YISRGSRKRGF 245 (319)
Q Consensus 214 a~VVSVlE~~~~G~~Al~ks~------~L~kG~~~~g~ 245 (319)
+=+|+-. |||..++..+. .|++||+-+|+
T Consensus 130 gk~vaAI---ChGp~~L~~~~~~~~g~~ll~Gk~vT~f 164 (236)
T d1qvwa_ 130 GGVVAAV---CHGPAMFDGLTDKKTGRPLIEGKSITGF 164 (236)
T ss_dssp TCEEEEE---TTGGGGGTTCBCTTTCSBTTTTCEECCS
T ss_pred CCeEEEe---hhhHHHHHHHhhcccccccccCceeccC
Confidence 3444444 89998887654 59999999986
No 10
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.56 E-value=64 Score=21.66 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=7.3
Q ss_pred hhhhcccccc
Q 020992 298 YFYDCKKRFI 307 (319)
Q Consensus 298 fY~~CKs~h~ 307 (319)
=||+|+..|.
T Consensus 50 ~YF~c~~~~G 59 (71)
T d2e3ia1 50 RYFQCEPLKG 59 (71)
T ss_dssp ESSCCSTTCE
T ss_pred EEEecCCCcE
Confidence 4888887765
Done!