BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020993
         (319 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
 pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
           Escherichia Coli
          Length = 553

 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/305 (55%), Positives = 216/305 (70%), Gaps = 5/305 (1%)

Query: 2   LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPP 61
           L GMF+F L D+   +++  RD +G+ PLYMG+   G ++ ASEMKAL   C     FP 
Sbjct: 117 LQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPA 176

Query: 62  GHIYSSKQGGLRRWYNPPCYS-EQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFXXXXXXX 120
           G    S+ G +R +Y+   +  + +  N  D   LR+A E +V   LM+DVP+       
Sbjct: 177 GSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGG 236

Query: 121 XXXXXXAAVASRYLA----DSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176
                 +A+  +Y A    D E +  W  QLHSF +GL GSPDLKAA+EVA++LGT HHE
Sbjct: 237 LDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHE 296

Query: 177 FHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGG 236
            HFTVQEG+DA+ +VIYHIETYDVTTIRASTPM+LMSRKIK++G+KMV+SGEGSDE+FGG
Sbjct: 297 IHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGG 356

Query: 237 YLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSID 296
           YLYFHKAPN +E H+ET RK+ ALH+YDC RANK+ SAWGVEARVPFLDK+F++ AM I+
Sbjct: 357 YLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRIN 416

Query: 297 PEWKM 301
           P+ KM
Sbjct: 417 PQDKM 421


>pdb|1Q15|A Chain A, Carbapenam Synthetase
 pdb|1Q15|B Chain B, Carbapenam Synthetase
 pdb|1Q15|C Chain C, Carbapenam Synthetase
 pdb|1Q15|D Chain D, Carbapenam Synthetase
 pdb|1Q19|A Chain A, Carbapenam Synthetase
 pdb|1Q19|B Chain B, Carbapenam Synthetase
 pdb|1Q19|C Chain C, Carbapenam Synthetase
 pdb|1Q19|D Chain D, Carbapenam Synthetase
          Length = 503

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 6/157 (3%)

Query: 146 QLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRA 205
           +L+++ IG E S + + +++VAD LGT H     +  E I+ + E IY+ E +D  +   
Sbjct: 264 KLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEI 323

Query: 206 STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY-FHKAPNKEEFHQETCRKIKALHLYD 264
            + +F + R+ +   V  +++G GSD +FGG L    +  N  +   E   + +    + 
Sbjct: 324 QSGLFNVYRQAQG-QVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTRWTGEF- 381

Query: 265 CLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKM 301
              A    S +G++ R PF     I+   ++ P++K+
Sbjct: 382 ---ATHGASCYGIDIRHPFWSHSLISLCHALHPDYKI 415


>pdb|1JGT|A Chain A, Crystal Structure Of Beta-Lactam Synthetase
 pdb|1JGT|B Chain B, Crystal Structure Of Beta-Lactam Synthetase
 pdb|1M1Z|A Chain A, Beta-Lactam Synthetase Apo Enzyme
 pdb|1M1Z|B Chain B, Beta-Lactam Synthetase Apo Enzyme
 pdb|1MB9|A Chain A, Beta-Lactam Synthetase Complexed With Atp
 pdb|1MB9|B Chain B, Beta-Lactam Synthetase Complexed With Atp
 pdb|1MBZ|A Chain A, Beta-Lactam Synthetase With Trapped Intermediate
 pdb|1MBZ|B Chain B, Beta-Lactam Synthetase With Trapped Intermediate
 pdb|1MC1|A Chain A, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
 pdb|1MC1|B Chain B, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
          Length = 513

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 43/260 (16%)

Query: 1   MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSD--------- 51
           +++G F+ V+  T D+  +A  D  G  PLY      G +  ++E KAL+          
Sbjct: 116 LVNGRFATVV-RTGDRVLLAT-DHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPL 172

Query: 52  -DCERFISF------PPGHIYSSKQGG-----LRRWYNPPCYSEQIPSNPYDPLVLRKAF 99
            D  R          P G +     G       R W   P  S +I         +R A 
Sbjct: 173 ADARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHRTWT--PGLSRRILPEGEAVAAVRAAL 230

Query: 100 EKAVVKRLMT-DVPFXXXXXXXXXXXXXAAVASRYLADSEAAC--QWGSQLHSFCIGLEG 156
           EKAV +R+   D P                ++    +   AAC  +   +L +  +G + 
Sbjct: 231 EKAVAQRVTPGDTPL-------------VVLSGGIDSSGVAACAHRAAGELDTVSMGTDT 277

Query: 157 SPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKI 216
           S + + AR V D+L TRH E      E +  L   ++  E+ D   I    P+  + R +
Sbjct: 278 SNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL 337

Query: 217 KSLGVKMVISGEGSDEIFGG 236
                + +++G G+D   GG
Sbjct: 338 DGP-ERRILTGYGADIPLGG 356


>pdb|2WOE|A Chain A, Crystal Structure Of The D97n Variant Of Dinitrogenase
           Reductase-Activating Glycohydrolase (Drag) From
           Rhodospirillum Rubrum In Complex With Adp-Ribose
 pdb|2WOE|B Chain B, Crystal Structure Of The D97n Variant Of Dinitrogenase
           Reductase-Activating Glycohydrolase (Drag) From
           Rhodospirillum Rubrum In Complex With Adp-Ribose
 pdb|2WOE|C Chain C, Crystal Structure Of The D97n Variant Of Dinitrogenase
           Reductase-Activating Glycohydrolase (Drag) From
           Rhodospirillum Rubrum In Complex With Adp-Ribose
          Length = 299

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 11/65 (16%)

Query: 137 SEAAC-QWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEG------IDALE 189
           S+AAC   G  +H     L G   +KA RE A+ L  +H +FHF   +G      +D ++
Sbjct: 168 SDAACLTLGRMVHH----LIGGRGMKACREEANRLVHQHRDFHFEPYKGQSSAYIVDTMQ 223

Query: 190 EVIYH 194
            V+++
Sbjct: 224 TVLHY 228


>pdb|2WOC|A Chain A, Crystal Structure Of The Dinitrogenase
           Reductase-Activating Glycohydrolase (Drag) From
           Rhodospirillum Rubrum
 pdb|2WOC|B Chain B, Crystal Structure Of The Dinitrogenase
           Reductase-Activating Glycohydrolase (Drag) From
           Rhodospirillum Rubrum
 pdb|2WOC|C Chain C, Crystal Structure Of The Dinitrogenase
           Reductase-Activating Glycohydrolase (Drag) From
           Rhodospirillum Rubrum
 pdb|2WOD|A Chain A, Crystal Structure Of The Dinitrogenase
           Reductase-Activating Glycohydrolase (Drag) From
           Rhodospirillum Rubrum In Complex With Adp-Ribsoyllysine
 pdb|2WOD|B Chain B, Crystal Structure Of The Dinitrogenase
           Reductase-Activating Glycohydrolase (Drag) From
           Rhodospirillum Rubrum In Complex With Adp-Ribsoyllysine
          Length = 299

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 11/65 (16%)

Query: 137 SEAAC-QWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEG------IDALE 189
           S+AAC   G  +H     L G   +KA RE A+ L  +H +FHF   +G      +D ++
Sbjct: 168 SDAACLTLGRMVHH----LIGGRGMKACREEANRLVHQHRDFHFEPYKGQSSAYIVDTMQ 223

Query: 190 EVIYH 194
            V+++
Sbjct: 224 TVLHY 228


>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
 pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
          Length = 350

 Score = 28.1 bits (61), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 3   DGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEM 46
           D   SF+L D      +AA D  G++P    WG DG  W    M
Sbjct: 161 DRSISFLLGDGAGAVIVAASDEPGISPSV--WGSDGERWSTISM 202


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,497,716
Number of Sequences: 62578
Number of extensions: 368767
Number of successful extensions: 776
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 6
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)