Query 020993
Match_columns 319
No_of_seqs 274 out of 2056
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0571 Asparagine synthase (g 100.0 6.5E-74 1.4E-78 511.6 25.7 313 1-315 116-432 (543)
2 PRK09431 asnB asparagine synth 100.0 7.3E-72 1.6E-76 541.0 31.0 317 1-317 117-440 (554)
3 PTZ00077 asparagine synthetase 100.0 2.4E-71 5.3E-76 539.3 31.7 316 1-316 124-449 (586)
4 PLN02549 asparagine synthase ( 100.0 3.9E-71 8.4E-76 536.6 32.3 316 1-316 116-435 (578)
5 TIGR03104 trio_amidotrans aspa 100.0 4.9E-63 1.1E-67 484.8 29.4 303 1-317 118-508 (589)
6 TIGR01536 asn_synth_AEB aspara 100.0 4.2E-62 9E-67 468.9 31.0 304 1-317 116-454 (467)
7 COG0367 AsnB Asparagine syntha 100.0 5.3E-60 1.2E-64 456.7 26.8 302 1-314 117-431 (542)
8 TIGR03108 eps_aminotran_1 exos 100.0 2.9E-57 6.2E-62 449.4 28.4 304 1-317 118-548 (628)
9 cd01991 Asn_Synthase_B_C The C 100.0 1.9E-39 4.2E-44 290.8 17.7 211 96-317 1-253 (269)
10 PF00733 Asn_synthase: Asparag 100.0 2.4E-38 5.3E-43 280.7 15.6 216 94-318 1-246 (255)
11 KOG0573 Asparagine synthase [A 100.0 1.4E-37 3.1E-42 280.3 18.8 306 2-319 114-483 (520)
12 cd01910 Wali7 This domain is p 99.8 9.8E-21 2.1E-25 160.8 10.6 85 1-86 124-209 (224)
13 cd01909 betaLS_CarA_N Glutamin 99.8 1.4E-20 3E-25 159.2 9.6 75 1-78 100-199 (199)
14 cd00712 AsnB Glutamine amidotr 99.7 4.9E-17 1.1E-21 141.4 9.3 76 1-77 116-220 (220)
15 cd01996 Alpha_ANH_like_III Thi 99.6 4.6E-15 9.9E-20 121.8 11.4 121 112-245 3-127 (154)
16 TIGR03573 WbuX N-acetyl sugar 99.6 1.5E-14 3.2E-19 133.6 13.9 118 111-239 60-179 (343)
17 PF13537 GATase_7: Glutamine a 99.5 1E-14 2.3E-19 115.4 6.1 51 1-51 75-125 (125)
18 cd03766 Gn_AT_II_novel Gn_AT_I 99.3 1.7E-12 3.7E-17 109.1 6.9 61 1-63 118-179 (181)
19 TIGR00268 conserved hypothetic 99.3 6.2E-12 1.3E-16 111.5 10.5 118 103-238 5-125 (252)
20 COG1606 ATP-utilizing enzymes 99.3 8.9E-12 1.9E-16 106.7 10.8 115 108-239 15-132 (269)
21 cd00553 NAD_synthase NAD+ synt 99.3 4.4E-11 9.5E-16 105.9 12.5 133 93-238 8-147 (248)
22 PRK14561 hypothetical protein; 99.3 4.2E-11 9.2E-16 101.8 11.0 106 112-233 2-107 (194)
23 cd00715 GPATase_N Glutamine am 99.3 1.9E-11 4.1E-16 108.4 9.3 71 1-73 153-224 (252)
24 PRK08341 amidophosphoribosyltr 99.2 8.1E-11 1.7E-15 111.5 12.3 116 1-120 154-283 (442)
25 PRK07847 amidophosphoribosyltr 99.2 1.1E-10 2.4E-15 112.2 12.9 116 1-119 183-313 (510)
26 PRK09123 amidophosphoribosyltr 99.2 1.8E-10 3.8E-15 110.4 14.0 121 1-127 174-309 (479)
27 PRK06388 amidophosphoribosyltr 99.2 1.6E-10 3.5E-15 110.3 13.4 116 1-119 171-302 (474)
28 PF06508 QueC: Queuosine biosy 99.2 2.5E-10 5.3E-15 98.1 13.1 156 113-296 2-174 (209)
29 PRK07631 amidophosphoribosyltr 99.2 2.1E-10 4.6E-15 109.4 13.4 104 1-107 163-280 (475)
30 PRK07272 amidophosphoribosyltr 99.2 4.5E-10 9.8E-15 107.4 15.2 70 1-72 164-234 (484)
31 PRK13980 NAD synthetase; Provi 99.2 1.5E-10 3.2E-15 103.5 11.2 133 93-238 15-149 (265)
32 PRK08525 amidophosphoribosyltr 99.2 2.3E-10 5.1E-15 109.0 13.2 106 1-108 153-273 (445)
33 COG0603 Predicted PP-loop supe 99.2 1.1E-10 2.4E-15 99.2 9.3 157 112-295 4-176 (222)
34 PRK00876 nadE NAD synthetase; 99.2 1.9E-10 4.2E-15 104.6 11.4 83 90-181 14-98 (326)
35 cd01990 Alpha_ANH_like_I This 99.2 7.7E-11 1.7E-15 101.1 8.0 110 113-238 1-113 (202)
36 TIGR00552 nadE NAD+ synthetase 99.2 8.9E-11 1.9E-15 104.0 8.5 135 90-238 4-145 (250)
37 PRK11106 queuosine biosynthesi 99.2 3E-10 6.5E-15 98.7 11.1 157 112-296 3-176 (231)
38 PRK07349 amidophosphoribosyltr 99.1 6.5E-10 1.4E-14 106.7 12.8 116 1-118 188-322 (500)
39 PRK06781 amidophosphoribosyltr 99.1 1.5E-09 3.3E-14 103.7 14.8 122 1-128 163-298 (471)
40 cd00714 GFAT Glutamine amidotr 99.1 1.7E-10 3.7E-15 99.9 7.6 62 1-66 152-214 (215)
41 cd00352 Gn_AT_II Glutamine ami 99.1 1.6E-10 3.5E-15 100.1 7.3 65 1-65 155-220 (220)
42 cd01907 GlxB Glutamine amidotr 99.1 2E-10 4.4E-15 101.5 7.8 63 1-66 182-248 (249)
43 PLN02440 amidophosphoribosyltr 99.1 2.5E-10 5.4E-15 109.7 8.8 68 1-70 153-221 (479)
44 PRK00143 mnmA tRNA-specific 2- 99.1 6.4E-10 1.4E-14 102.9 10.9 112 112-234 2-130 (346)
45 PF12481 DUF3700: Aluminium in 99.1 4.7E-10 1E-14 94.0 8.7 85 1-86 128-213 (228)
46 cd01998 tRNA_Me_trans tRNA met 99.1 1.1E-09 2.3E-14 101.6 11.6 112 112-234 1-127 (349)
47 PF03054 tRNA_Me_trans: tRNA m 99.1 1.6E-10 3.5E-15 106.3 5.8 113 112-235 2-131 (356)
48 TIGR01134 purF amidophosphorib 99.1 5.5E-10 1.2E-14 106.4 9.1 116 1-119 154-284 (442)
49 COG0482 TrmU Predicted tRNA(5- 99.1 1.1E-09 2.3E-14 99.6 10.3 110 110-231 3-127 (356)
50 TIGR00364 exsB protein. This p 99.0 3.2E-09 6.9E-14 91.0 12.5 155 114-296 2-172 (201)
51 cd01993 Alpha_ANH_like_II This 99.0 1.6E-09 3.4E-14 91.4 10.3 116 112-235 1-121 (185)
52 PRK14665 mnmA tRNA-specific 2- 99.0 9.1E-10 2E-14 101.9 9.4 112 108-231 3-124 (360)
53 PTZ00323 NAD+ synthase; Provis 99.0 6.6E-09 1.4E-13 93.4 13.8 140 94-239 28-181 (294)
54 PRK05793 amidophosphoribosyltr 99.0 9.5E-10 2.1E-14 105.4 8.6 68 1-71 168-236 (469)
55 PRK09246 amidophosphoribosyltr 99.0 8.1E-10 1.8E-14 106.8 7.8 68 1-69 162-233 (501)
56 PRK00331 glucosamine--fructose 99.0 1.3E-09 2.8E-14 108.6 9.2 68 1-72 153-221 (604)
57 PF02540 NAD_synthase: NAD syn 99.0 2.1E-09 4.5E-14 94.5 8.8 134 93-239 3-139 (242)
58 PRK04527 argininosuccinate syn 99.0 4.2E-09 9E-14 97.9 10.6 109 110-229 2-118 (400)
59 PRK14664 tRNA-specific 2-thiou 98.9 8.1E-09 1.8E-13 95.5 12.0 111 110-232 5-120 (362)
60 TIGR00420 trmU tRNA (5-methyla 98.9 6.4E-09 1.4E-13 96.3 11.0 108 112-230 2-127 (352)
61 PRK00768 nadE NAD synthetase; 98.9 1.6E-08 3.4E-13 89.5 12.2 141 95-239 21-170 (268)
62 TIGR00884 guaA_Cterm GMP synth 98.9 1E-08 2.2E-13 93.3 11.1 117 102-233 9-130 (311)
63 TIGR01135 glmS glucosamine--fr 98.9 3.1E-09 6.7E-14 105.9 8.5 67 1-71 152-219 (607)
64 PRK00919 GMP synthase subunit 98.9 1.4E-08 3E-13 91.9 11.1 123 95-233 7-132 (307)
65 PRK00509 argininosuccinate syn 98.9 1.1E-08 2.3E-13 95.5 10.6 110 111-230 3-119 (399)
66 PRK13981 NAD synthetase; Provi 98.9 2E-08 4.2E-13 98.8 12.7 138 92-240 260-406 (540)
67 cd01712 ThiI ThiI is required 98.9 1.7E-08 3.7E-13 84.7 10.0 108 112-232 1-115 (177)
68 PRK08349 hypothetical protein; 98.8 4.4E-08 9.6E-13 83.7 10.4 110 112-233 2-118 (198)
69 PTZ00295 glucosamine-fructose- 98.8 1.5E-08 3.2E-13 101.5 8.3 72 1-76 183-255 (640)
70 PRK10696 tRNA 2-thiocytidine b 98.8 7E-08 1.5E-12 85.9 11.5 131 93-234 10-145 (258)
71 TIGR02432 lysidine_TilS_N tRNA 98.8 8.4E-08 1.8E-12 81.3 11.0 108 112-233 1-112 (189)
72 PRK13820 argininosuccinate syn 98.7 6.7E-08 1.5E-12 90.1 10.7 110 111-231 3-120 (394)
73 cd01997 GMP_synthase_C The C-t 98.7 5.3E-08 1.1E-12 87.9 9.0 108 112-233 1-113 (295)
74 PRK00074 guaA GMP synthase; Re 98.7 1.3E-07 2.7E-12 92.0 11.9 125 94-233 200-329 (511)
75 cd01999 Argininosuccinate_Synt 98.7 1.6E-07 3.6E-12 87.6 11.5 108 113-230 1-116 (385)
76 COG0037 MesJ tRNA(Ile)-lysidin 98.7 1.1E-07 2.3E-12 86.5 9.6 123 95-233 6-133 (298)
77 cd01986 Alpha_ANH_like Adenine 98.7 1.5E-07 3.3E-12 71.7 8.5 76 113-235 1-76 (103)
78 PLN00200 argininosuccinate syn 98.6 2.7E-07 5.8E-12 86.3 11.4 111 111-230 6-123 (404)
79 PLN02347 GMP synthetase 98.6 1.9E-07 4.1E-12 90.8 10.3 122 101-234 220-349 (536)
80 PRK01565 thiamine biosynthesis 98.6 1.8E-07 4E-12 88.1 9.9 108 110-234 176-293 (394)
81 cd01992 PP-ATPase N-terminal d 98.6 1.3E-07 2.8E-12 79.8 8.0 104 112-233 1-109 (185)
82 COG0171 NadE NAD synthase [Coe 98.6 1E-06 2.2E-11 77.9 13.4 140 93-239 6-155 (268)
83 PRK02628 nadE NAD synthetase; 98.6 6.5E-07 1.4E-11 90.1 13.4 144 92-241 341-495 (679)
84 PF01171 ATP_bind_3: PP-loop f 98.6 1.6E-07 3.5E-12 79.1 7.7 104 112-233 1-109 (182)
85 TIGR00032 argG argininosuccina 98.6 2.6E-07 5.7E-12 86.5 9.8 104 112-230 1-116 (394)
86 KOG2805 tRNA (5-methylaminomet 98.5 6E-07 1.3E-11 79.2 10.0 117 111-238 6-139 (377)
87 PRK08384 thiamine biosynthesis 98.5 9.1E-07 2E-11 82.5 10.4 109 110-233 180-297 (381)
88 TIGR00342 thiazole biosynthesi 98.5 1.1E-06 2.3E-11 82.3 10.4 110 110-233 172-288 (371)
89 cd01713 PAPS_reductase This do 98.5 1.1E-06 2.3E-11 72.7 9.3 116 112-235 1-120 (173)
90 cd01995 ExsB ExsB is a transcr 98.5 1.1E-06 2.4E-11 73.0 9.3 131 112-295 1-136 (169)
91 cd00713 GltS Glutamine amidotr 98.4 9.1E-07 2E-11 82.7 8.7 66 2-69 326-394 (413)
92 cd01994 Alpha_ANH_like_IV This 98.4 2E-06 4.4E-11 73.1 9.6 90 112-232 1-100 (194)
93 PRK05253 sulfate adenylyltrans 98.4 6.5E-06 1.4E-10 74.5 13.0 108 111-232 28-139 (301)
94 TIGR03679 arCOG00187 arCOG0018 98.4 2.1E-06 4.5E-11 74.4 9.4 89 115-232 2-98 (218)
95 COG2117 Predicted subunit of t 98.4 1.6E-06 3.6E-11 69.3 7.7 62 112-183 2-63 (198)
96 PRK01269 tRNA s(4)U8 sulfurtra 98.3 3.4E-06 7.4E-11 81.7 10.0 109 111-233 178-293 (482)
97 PRK05370 argininosuccinate syn 98.3 6.4E-06 1.4E-10 77.1 11.1 115 106-233 7-138 (447)
98 PF02568 ThiI: Thiamine biosyn 98.2 2.6E-06 5.6E-11 72.2 6.6 110 110-233 3-121 (197)
99 PF00764 Arginosuc_synth: Argi 98.2 6.4E-06 1.4E-10 76.5 9.4 110 114-233 1-121 (388)
100 PRK08576 hypothetical protein; 98.2 2.1E-05 4.6E-10 74.5 12.2 121 95-232 217-342 (438)
101 COG1365 Predicted ATPase (PP-l 98.2 6.6E-06 1.4E-10 68.9 7.2 125 94-239 34-170 (255)
102 PLN02339 NAD+ synthase (glutam 98.2 3.3E-05 7.1E-10 78.0 13.5 90 92-181 328-449 (700)
103 PRK10660 tilS tRNA(Ile)-lysidi 98.1 1.5E-05 3.2E-10 76.3 10.2 77 100-181 5-85 (436)
104 COG0137 ArgG Argininosuccinate 98.1 4E-05 8.6E-10 70.1 11.4 113 111-233 5-128 (403)
105 PTZ00394 glucosamine-fructose- 98.1 1.4E-05 3E-10 80.3 8.8 68 1-71 187-275 (670)
106 PLN02981 glucosamine:fructose- 98.0 1.4E-05 3.1E-10 80.5 8.4 68 1-71 181-272 (680)
107 COG0034 PurF Glutamine phospho 97.9 3.5E-05 7.7E-10 71.8 8.5 65 1-67 160-225 (470)
108 TIGR02039 CysD sulfate adenyly 97.9 9E-05 2E-09 66.7 9.8 124 94-233 7-132 (294)
109 KOG0572 Glutamine phosphoribos 97.8 7.6E-05 1.6E-09 67.8 7.8 68 1-70 163-235 (474)
110 PRK02090 phosphoadenosine phos 97.7 0.00016 3.4E-09 63.8 8.6 71 97-180 30-102 (241)
111 COG0519 GuaA GMP synthase, PP- 97.6 0.00049 1.1E-08 60.3 10.0 76 94-179 6-84 (315)
112 PRK12563 sulfate adenylyltrans 97.5 0.00075 1.6E-08 61.1 9.9 108 111-232 38-149 (312)
113 PRK08557 hypothetical protein; 97.5 0.0016 3.6E-08 61.6 12.5 58 111-178 182-241 (417)
114 PRK11750 gltB glutamate syntha 97.5 0.00037 7.9E-09 74.0 8.2 65 2-68 336-403 (1485)
115 PF01507 PAPS_reduct: Phosphoa 97.5 0.00044 9.5E-09 57.3 7.2 108 112-233 1-112 (174)
116 COG0301 ThiI Thiamine biosynth 97.3 0.00099 2.1E-08 61.8 8.2 109 110-233 175-292 (383)
117 PRK13795 hypothetical protein; 97.3 0.0015 3.2E-08 65.5 9.6 61 110-180 243-305 (636)
118 PRK13794 hypothetical protein; 97.2 0.0058 1.3E-07 59.2 12.3 61 110-179 247-309 (479)
119 KOG1706 Argininosuccinate synt 97.2 0.0016 3.4E-08 57.8 7.5 121 110-244 5-138 (412)
120 TIGR03442 conserved hypothetic 97.1 0.0016 3.5E-08 57.7 7.5 59 6-73 189-247 (251)
121 TIGR00289 conserved hypothetic 97.1 0.0065 1.4E-07 52.6 10.9 59 112-181 2-68 (222)
122 cd01908 YafJ Glutamine amidotr 97.1 0.0021 4.6E-08 57.1 8.1 60 4-69 180-256 (257)
123 cd01984 AANH_like Adenine nucl 96.9 0.0034 7.4E-08 45.6 6.3 21 113-133 1-21 (86)
124 TIGR00434 cysH phosophoadenyly 96.9 0.012 2.7E-07 50.6 10.5 59 111-179 14-74 (212)
125 PRK06850 hypothetical protein; 96.6 0.04 8.6E-07 53.4 12.7 133 98-233 21-172 (507)
126 TIGR03183 DNA_S_dndC putative 96.5 0.023 5E-07 54.3 10.5 129 101-232 3-150 (447)
127 TIGR02057 PAPS_reductase phosp 96.5 0.021 4.5E-07 49.8 9.3 65 110-181 25-89 (226)
128 COG0175 CysH 3'-phosphoadenosi 96.5 0.037 8E-07 49.3 11.0 113 110-235 39-155 (261)
129 KOG1622 GMP synthase [Nucleoti 96.2 0.024 5.3E-07 53.0 8.6 70 103-181 224-295 (552)
130 COG3969 Predicted phosphoadeno 96.1 0.038 8.3E-07 50.0 8.8 56 108-168 25-82 (407)
131 PF09147 DUF1933: Domain of un 96.0 0.041 8.9E-07 45.1 7.9 62 3-67 99-186 (201)
132 COG2102 Predicted ATPases of P 95.5 0.2 4.3E-06 43.0 10.3 60 112-181 2-69 (223)
133 PF01902 ATP_bind_4: ATP-bindi 95.2 0.068 1.5E-06 46.2 6.8 69 112-191 2-80 (218)
134 COG0449 GlmS Glucosamine 6-pho 94.9 0.1 2.3E-06 51.3 7.9 67 1-71 150-217 (597)
135 TIGR00290 MJ0570_dom MJ0570-re 94.6 0.16 3.4E-06 44.1 7.6 57 113-179 3-66 (223)
136 KOG2303 Predicted NAD synthase 93.2 0.78 1.7E-05 43.9 9.6 70 112-181 351-449 (706)
137 COG0367 AsnB Asparagine syntha 90.7 0.19 4.1E-06 49.6 2.9 44 270-316 419-462 (542)
138 KOG2840 Uncharacterized conser 87.8 2 4.3E-05 39.0 6.9 117 110-233 51-176 (347)
139 PLN02309 5'-adenylylsulfate re 82.7 7.7 0.00017 37.5 8.7 61 111-180 111-171 (457)
140 TIGR02055 APS_reductase thiore 81.9 3.5 7.6E-05 34.8 5.5 51 120-180 2-54 (191)
141 TIGR00424 APS_reduc 5'-adenyly 77.4 14 0.0003 35.8 8.5 61 111-180 116-176 (463)
142 PF13230 GATase_4: Glutamine a 72.7 8.8 0.00019 34.4 5.6 61 4-73 170-254 (271)
143 KOG0053 Cystathionine beta-lya 68.3 96 0.0021 29.5 11.5 121 98-237 81-204 (409)
144 PF02677 DUF208: Uncharacteriz 62.1 47 0.001 27.7 7.4 94 119-227 7-111 (176)
145 PRK05967 cystathionine beta-ly 56.7 1.1E+02 0.0023 29.1 9.9 103 111-228 79-187 (395)
146 PF08057 Ery_res_leader2: Eryt 55.4 6.1 0.00013 17.8 0.6 13 273-285 1-13 (14)
147 PF07287 DUF1446: Protein of u 54.6 1.5E+02 0.0032 27.9 10.2 25 216-240 156-181 (362)
148 COG1856 Uncharacterized homolo 52.4 14 0.0003 32.0 2.8 19 109-127 53-71 (275)
149 PF01053 Cys_Met_Meta_PP: Cys/ 51.5 69 0.0015 30.3 7.7 106 111-228 70-179 (386)
150 PRK05968 hypothetical protein; 50.7 1.7E+02 0.0037 27.5 10.3 118 99-231 68-188 (389)
151 COG0041 PurE Phosphoribosylcar 48.5 51 0.0011 26.8 5.3 60 158-238 13-75 (162)
152 PF13519 VWA_2: von Willebrand 46.2 1.1E+02 0.0025 24.0 7.5 87 94-189 81-170 (172)
153 PRK05613 O-acetylhomoserine am 45.2 1E+02 0.0022 29.7 7.9 105 112-228 85-193 (437)
154 COG0626 MetC Cystathionine bet 43.8 1.6E+02 0.0034 28.0 8.7 106 110-227 77-186 (396)
155 PRK07582 cystathionine gamma-l 42.4 86 0.0019 29.2 6.8 102 113-228 67-170 (366)
156 PLN02360 probable 6-phosphoglu 42.4 28 0.0006 31.1 3.4 33 89-121 20-52 (268)
157 PRK08574 cystathionine gamma-s 40.0 1.4E+02 0.003 28.1 7.8 59 168-228 113-175 (385)
158 PF08144 CPL: CPL (NUC119) dom 39.4 11 0.00023 30.5 0.2 28 22-49 2-29 (148)
159 TIGR01198 pgl 6-phosphoglucono 39.3 34 0.00073 29.8 3.3 41 92-132 9-49 (233)
160 TIGR01329 cysta_beta_ly_E cyst 38.7 2E+02 0.0044 26.9 8.8 116 98-228 51-169 (378)
161 TIGR01328 met_gam_lyase methio 37.7 2.5E+02 0.0053 26.5 9.2 118 99-230 64-184 (391)
162 COG1435 Tdk Thymidine kinase [ 37.3 85 0.0018 26.7 5.2 30 209-238 99-131 (201)
163 PRK08247 cystathionine gamma-s 36.4 3.4E+02 0.0073 25.2 9.8 115 99-228 57-174 (366)
164 PRK08114 cystathionine beta-ly 34.3 2E+02 0.0042 27.4 7.8 106 110-228 76-187 (395)
165 PRK08248 O-acetylhomoserine am 34.1 2E+02 0.0044 27.5 8.0 115 99-227 69-186 (431)
166 cd00614 CGS_like CGS_like: Cys 34.1 3.1E+02 0.0067 25.4 9.2 117 99-229 45-164 (369)
167 KOG0399 Glutamate synthase [Am 34.0 90 0.002 34.0 5.7 63 4-68 412-477 (2142)
168 PRK08776 cystathionine gamma-s 33.7 3.1E+02 0.0068 26.0 9.2 117 99-230 65-185 (405)
169 PRK08133 O-succinylhomoserine 31.2 3.2E+02 0.0069 25.7 8.8 115 99-227 66-183 (390)
170 PRK07503 methionine gamma-lyas 30.6 2.9E+02 0.0064 26.1 8.5 104 113-229 82-189 (403)
171 PRK07810 O-succinylhomoserine 30.5 4E+02 0.0086 25.2 9.3 116 99-228 75-193 (403)
172 PRK03359 putative electron tra 30.2 2.8E+02 0.006 24.6 7.6 57 114-176 84-144 (256)
173 cd01400 6PGL 6PGL: 6-Phosphogl 29.6 79 0.0017 27.1 4.1 39 94-132 6-44 (219)
174 PRK06767 methionine gamma-lyas 29.4 3.1E+02 0.0066 25.7 8.3 106 112-230 77-186 (386)
175 PRK09762 galactosamine-6-phosp 28.5 95 0.0021 27.0 4.4 39 94-132 11-49 (232)
176 PRK05939 hypothetical protein; 27.9 4.3E+02 0.0093 25.0 9.0 101 111-227 62-168 (397)
177 TIGR03436 acidobact_VWFA VWFA- 27.5 4.4E+02 0.0096 23.4 9.4 72 110-192 164-251 (296)
178 PRK08134 O-acetylhomoserine am 27.1 2.9E+02 0.0064 26.5 7.8 101 113-228 81-187 (433)
179 PF00274 Glycolytic: Fructose- 27.0 1.8E+02 0.004 27.0 6.1 33 91-123 230-262 (348)
180 PRK09028 cystathionine beta-ly 26.3 4.8E+02 0.01 24.7 9.0 103 113-227 78-183 (394)
181 COG1066 Sms Predicted ATP-depe 26.1 6E+02 0.013 24.5 9.8 95 122-229 106-219 (456)
182 PRK06460 hypothetical protein; 26.0 5.2E+02 0.011 24.1 9.2 103 113-228 62-168 (376)
183 PRK08064 cystathionine beta-ly 25.5 3.9E+02 0.0083 25.1 8.3 102 113-228 71-176 (390)
184 PTZ00285 glucosamine-6-phospha 25.4 1.4E+02 0.0031 26.2 5.0 45 89-133 10-55 (253)
185 PRK06702 O-acetylhomoserine am 25.3 3.4E+02 0.0074 26.1 7.9 114 99-227 66-184 (432)
186 cd01455 vWA_F11C1-5a_type Von 25.0 3.6E+02 0.0078 22.8 7.0 26 97-122 95-123 (191)
187 cd01456 vWA_ywmD_type VWA ywmD 25.0 2.5E+02 0.0055 23.4 6.4 28 146-173 168-195 (206)
188 PRK07671 cystathionine beta-ly 24.9 5.1E+02 0.011 24.2 8.9 115 99-228 55-172 (377)
189 PF01182 Glucosamine_iso: Gluc 24.1 2.5E+02 0.0054 23.6 6.1 42 93-134 3-44 (199)
190 PF04566 RNA_pol_Rpb2_4: RNA p 24.0 1.2E+02 0.0026 20.5 3.3 24 9-33 36-61 (63)
191 PRK08249 cystathionine gamma-s 23.9 4.5E+02 0.0099 24.8 8.4 106 112-230 80-189 (398)
192 PF00266 Aminotran_5: Aminotra 23.6 5.7E+02 0.012 23.4 9.3 124 92-228 41-177 (371)
193 PRK02122 glucosamine-6-phospha 23.2 3.1E+02 0.0066 28.1 7.4 46 88-133 36-81 (652)
194 PRK12342 hypothetical protein; 22.8 2.3E+02 0.0051 25.1 5.8 58 113-176 80-141 (254)
195 PRK07050 cystathionine beta-ly 22.7 6.5E+02 0.014 23.7 9.3 113 99-228 70-188 (394)
196 PRK07811 cystathionine gamma-s 22.5 3.4E+02 0.0075 25.4 7.3 18 210-227 166-183 (388)
197 PRK12358 putative 6-phosphoglu 22.2 2.8E+02 0.0061 24.1 6.2 41 93-133 10-50 (239)
198 KOG3147 6-phosphogluconolacton 22.1 1E+02 0.0022 27.2 3.2 40 92-134 21-60 (252)
199 TIGR01324 cysta_beta_ly_B cyst 22.0 6.6E+02 0.014 23.5 10.8 102 112-228 66-173 (377)
200 cd01453 vWA_transcription_fact 21.8 4.6E+02 0.0099 21.6 8.9 73 94-177 87-165 (183)
201 PF10624 TraS: Plasmid conjuga 21.8 32 0.0007 27.0 0.1 16 109-124 135-150 (164)
202 PRK00443 nagB glucosamine-6-ph 21.6 2.8E+02 0.0061 24.2 6.2 41 92-132 13-54 (261)
203 KOG2316 Predicted ATPase (PP-l 21.6 1E+02 0.0022 26.8 3.1 58 112-179 2-72 (277)
204 TIGR01162 purE phosphoribosyla 20.8 3.3E+02 0.0071 22.2 5.8 24 214-237 47-70 (156)
205 KOG2594 Uncharacterized conser 20.5 6E+02 0.013 23.8 7.9 23 211-233 187-209 (396)
206 TIGR03301 PhnW-AepZ 2-aminoeth 20.4 6.3E+02 0.014 22.6 10.4 121 94-227 31-162 (355)
No 1
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-74 Score=511.63 Aligned_cols=313 Identities=70% Similarity=1.122 Sum_probs=293.3
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCeEEEeeCCCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~~~~~~~~~~ 80 (319)
.|+|||||+++|...+++.++||++|++||||.++.+++++||||+|+|-..|+.|...||||+++.+.+.+.||++|.|
T Consensus 116 ~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w 195 (543)
T KOG0571|consen 116 MLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEW 195 (543)
T ss_pred HhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhhhhceeecCCcceeecccccccCCCCchh
Confidence 48999999999999999999999999999999998889999999999999999999999999999998888999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccH
Q 020993 81 YSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDL 160 (319)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~ 160 (319)
.....|+.+.....+++.|.+||++|+.+|+|+|++||||+|||+||+++++...+.+. +.|.++++|++|+++++|+
T Consensus 196 ~~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL 273 (543)
T KOG0571|consen 196 FDENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDL 273 (543)
T ss_pred hhccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHHHHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhH
Confidence 87767777777778999999999999999999999999999999999999998765322 2256899999999999999
Q ss_pred HHHHHHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCcccc
Q 020993 161 KAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (319)
Q Consensus 161 ~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~ 240 (319)
..|++||+++|+.|+++.++.++-+++++++++++|+++.++++++++||+++++++++|++++|||+|+||+||||-+|
T Consensus 274 ~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIRastpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYf 353 (543)
T KOG0571|consen 274 LAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIRASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYF 353 (543)
T ss_pred HHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEecCCchHHHHHHHHhcceEEEEecCCchhhhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHhhhhhccccchhhhccCceeccccCCHHHHHHHhcCCccccccC---C-CcchhHHHhhh
Q 020993 241 HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVW---E-FSYIVLHFILW 315 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~l~r~dr~~~~~gve~r~Pfld~~lve~~~~lp~~~k~~~---~-~~~~~~r~~~~ 315 (319)
+++|+..+|++|..++++.||.++++|.||.+|+||+|+|+||||+++++++++|||++|+-. + ..|.+||..+-
T Consensus 354 h~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFLDk~F~~~~~sldPe~K~~k~~~~r~eK~vlrsafd 432 (543)
T KOG0571|consen 354 HKAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFLDKRFLELAMSLDPEEKMIKPKEGRIEKYVLRSAFD 432 (543)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccccHHHHHHHhcCChhHhcCCcchhhHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999975 3 37777777654
No 2
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=7.3e-72 Score=541.00 Aligned_cols=317 Identities=61% Similarity=1.011 Sum_probs=277.4
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCeEEEeeCCCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~~~~~~~~~~ 80 (319)
+|+|||||++||.++++++++|||+|+|||||++..++.++||||+|+|+..+++|++|||||++.+++++.++||++.|
T Consensus 117 ~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~g~~~~y~~~~~ 196 (554)
T PRK09431 117 DLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCKTIKEFPPGHYYWSKDGEFVRYYQRDW 196 (554)
T ss_pred hCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHHhcCCEEEECCCeEEEECCCcEEEecCCCc
Confidence 58999999999999999999999999999999986448899999999999999999999999999887667889999876
Q ss_pred CCC-CCCCCCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhh----hhhhcCCCcceeeccCC
Q 020993 81 YSE-QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSE----AACQWGSQLHSFCIGLE 155 (319)
Q Consensus 81 ~~~-~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~----~~~~~~~~~~~~t~~~~ 155 (319)
... ..++.++.+++++++|.+||++|+.+|+|+|++||||+|||+|++++++...+.. ....|..+++|||++++
T Consensus 197 ~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~ 276 (554)
T PRK09431 197 FDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE 276 (554)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC
Confidence 422 2234455688999999999999999999999999999999999999988753210 00011136899999999
Q ss_pred CCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCcccccc
Q 020993 156 GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (319)
Q Consensus 156 ~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~ 235 (319)
+++|..+|+++|+++|++|+++.++.+++++.++++++++|++++..+.+++++|++++.+++.|++|+|||+||||+||
T Consensus 277 ~~~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~dp~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElFg 356 (554)
T PRK09431 277 GSPDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFG 356 (554)
T ss_pred CCChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccCCccchhHHHHHHHHHHHHHcCCEEEEecCchhhhhc
Confidence 99999999999999999999999999999999999999999977666777899999999987789999999999999999
Q ss_pred CccccccCCChhHHHHHHHHHHHHhhhhhccccchhhhccCceeccccCCHHHHHHHhcCCccccccC-C-CcchhHHHh
Q 020993 236 GYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVW-E-FSYIVLHFI 313 (319)
Q Consensus 236 Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~dr~~~~~gve~r~Pfld~~lve~~~~lp~~~k~~~-~-~~~~~~r~~ 313 (319)
||.+|+.+|+...+..+..+++..++..++.|.||++|++|+|+|+||||++||+++++||+++|+.+ + ..|.+||.+
T Consensus 357 GY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~lv~~a~~ip~~~K~~~~~~~~K~iLR~a 436 (554)
T PRK09431 357 GYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEARVPFLDKEFLDVAMRINPEDKMCGNGKMEKHILREA 436 (554)
T ss_pred CchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCceeecCcCCHHHHHHHHhCCHHHHhcCCCCCCHHHHHHH
Confidence 99999877765566677788888888889999999999999999999999999999999999999995 3 478888887
Q ss_pred hhcc
Q 020993 314 LWPL 317 (319)
Q Consensus 314 ~~~~ 317 (319)
++++
T Consensus 437 ~~~~ 440 (554)
T PRK09431 437 FEGY 440 (554)
T ss_pred Hhhh
Confidence 7653
No 3
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=2.4e-71 Score=539.34 Aligned_cols=316 Identities=61% Similarity=1.047 Sum_probs=277.3
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecC--CeEEEeeCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQ--GGLRRWYNP 78 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~--~~~~~~~~~ 78 (319)
+|+|||||++||..+++++++|||+|+|||||.+..++.++||||+|+|...+.+|++|||||++.++. .+.++||+|
T Consensus 124 ~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~~~~~~~~y~~~ 203 (586)
T PTZ00077 124 HLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFVRYYNP 203 (586)
T ss_pred hcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecHHHHHHhcCCEEEeCCCcEEEecCCcceeEEecCC
Confidence 589999999999999999999999999999998744678999999999999999999999999998864 467899998
Q ss_pred CCCCC--CCCCCCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhh--hhhhcCCCcceeeccC
Q 020993 79 PCYSE--QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSE--AACQWGSQLHSFCIGL 154 (319)
Q Consensus 79 ~~~~~--~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~--~~~~~~~~~~~~t~~~ 154 (319)
.|... ..++.++.+++++++|.+||++|+.+|+|+|++||||+|||+|++++++...+.. ..+.+..+++|||+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~ 283 (586)
T PTZ00077 204 NWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGL 283 (586)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCC
Confidence 76432 1334455678999999999999999999999999999999999999988653110 0001113689999999
Q ss_pred CCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccc
Q 020993 155 EGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (319)
Q Consensus 155 ~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf 234 (319)
++++|..+|+++|+++|++|+++.++.++.++.++++++++|+|+.+.+++++++|++++.+++.|++|+|||+||||+|
T Consensus 284 ~~~~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 284 EGSPDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred CCCchHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhc
Confidence 98999999999999999999999999999999999999999999776777889999999999999999999999999999
Q ss_pred cCccccccCCChhHHHHHHHHHHHHhhhhhccccchhhhccCceeccccCCHHHHHHHhcCCccccccC----CCcchhH
Q 020993 235 GGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVW----EFSYIVL 310 (319)
Q Consensus 235 ~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~dr~~~~~gve~r~Pfld~~lve~~~~lp~~~k~~~----~~~~~~~ 310 (319)
|||.+|+.+|+..+|..++.++++.++.+++.|.||++|++|+|+|+||||++||+++++||+++|+.+ +..|.+|
T Consensus 364 gGY~~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~~K~~~~~~~~~~K~iL 443 (586)
T PTZ00077 364 GGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKATMAWGIEARVPFLDKDFLEYVMNIDPKYKMCNAFEGQMEKYIL 443 (586)
T ss_pred cCcHhhhhCcchHHHHHHHHHHHHHHhccCCchhhHHHHhcCceeecCcCCHHHHHHHHhCCHHHhcCCCCCCCCCHHHH
Confidence 999999887766667777777788888889999999999999999999999999999999999999987 4577788
Q ss_pred HHhhhc
Q 020993 311 HFILWP 316 (319)
Q Consensus 311 r~~~~~ 316 (319)
|.+++.
T Consensus 444 R~a~~~ 449 (586)
T PTZ00077 444 RKAFEG 449 (586)
T ss_pred HHHHhc
Confidence 887765
No 4
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=3.9e-71 Score=536.55 Aligned_cols=316 Identities=84% Similarity=1.374 Sum_probs=278.4
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCeEEEeeCCCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPC 80 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~~~~~~~~~~ 80 (319)
+|+|||||++||.++++++++|||+|+|||||.+..++.++||||+|+|...+++|+.|||||++.++.++.++||++.|
T Consensus 116 ~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~~~~~I~~lpPGh~l~~~~~~~~~y~~~~~ 195 (578)
T PLN02549 116 MLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDCERFEEFPPGHYYSSKAGGFRRWYNPPW 195 (578)
T ss_pred hCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHHHhCCEEEeCCCeEEEEcCCCEEEEEeccc
Confidence 58999999999999999999999999999999875467899999999999999999999999999987667899999877
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccH
Q 020993 81 YSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDL 160 (319)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~ 160 (319)
.....++.++..++++++|.+||++|+.+|+|+|++||||+|||+|++++++...+......++.+++|||+++++++|.
T Consensus 196 ~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~ 275 (578)
T PLN02549 196 FSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCVGLEGSPDL 275 (578)
T ss_pred CccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEecCCCCCCHH
Confidence 53333444566789999999999999999999999999999999999999886532100001123689999999989999
Q ss_pred HHHHHHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCcccc
Q 020993 161 KAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (319)
Q Consensus 161 ~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~ 240 (319)
.+|+++|+++|++|+++.++.+++++.+++++++++++++..+++++++|++++.+++.|++|+|||+||||+||||.+|
T Consensus 276 ~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~s~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~ 355 (578)
T PLN02549 276 KAAREVADYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYF 355 (578)
T ss_pred HHHHHHHHHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhcCCEEEEecCchHhhhcChHhh
Confidence 99999999999999999999999999999999999987665677789999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHhhhhhccccchhhhccCceeccccCCHHHHHHHhcCCccccccC----CCcchhHHHhhhc
Q 020993 241 HKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVW----EFSYIVLHFILWP 316 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~l~r~dr~~~~~gve~r~Pfld~~lve~~~~lp~~~k~~~----~~~~~~~r~~~~~ 316 (319)
+++|+..+|..++.++++.++..++.|.||++|++|+|+|+||||++||+++++||+++|+.+ +..|.+||.++..
T Consensus 356 ~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD~~~v~~a~~ip~~~k~~~~~~~~~eK~iLR~a~~~ 435 (578)
T PLN02549 356 HKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLDKEFIDVAMSIDPEWKMIRPGEGRIEKWVLRKAFDD 435 (578)
T ss_pred hhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCCHHHHHHHHhCCHHHHhcCCCCCCCchHHHHHHHhh
Confidence 888766667788888888888889999999999999999999999999999999999999985 2467788877765
No 5
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=4.9e-63 Score=484.85 Aligned_cols=303 Identities=31% Similarity=0.507 Sum_probs=243.4
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc----------------------------
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------- 52 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~---------------------------- 52 (319)
+|+|||||++||..+++++++|||+|+|||||+.. ++.++||||+|+|+..
T Consensus 118 ~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~ 196 (589)
T TIGR03104 118 RFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTI 196 (589)
T ss_pred HhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCch
Confidence 58999999999999999999999999999999985 7889999999998752
Q ss_pred cccceeeCCCcEEEec-CC--eEEEeeCCCCCCC---CCCCCCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHH
Q 020993 53 CERFISFPPGHIYSSK-QG--GLRRWYNPPCYSE---QIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLV 126 (319)
Q Consensus 53 ~~~i~~l~pG~~l~~~-~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~i 126 (319)
+++|++|||||+++++ ++ +.++||++..... ...+.++.+++++++|.+||++|+.+|+|+|++||||+|||+|
T Consensus 197 ~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~I 276 (589)
T TIGR03104 197 LKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLI 276 (589)
T ss_pred hhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCHHHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHH
Confidence 3689999999999885 34 4578999864321 1123345578899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhcCCCcceeeccCCCC-----ccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcC
Q 020993 127 AAVASRYLADSEAACQWGSQLHSFCIGLEGS-----PDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVT 201 (319)
Q Consensus 127 aa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-----~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 201 (319)
++++++... .++.|||+++++. +|.++|+++|+++|++|+++.++++++.+.+++++++.++|..
T Consensus 277 aa~~~~~~~---------~~l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~- 346 (589)
T TIGR03104 277 VGLLAEAGV---------DGLRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMV- 346 (589)
T ss_pred HHHHHHhcC---------CCceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCC-
Confidence 999887642 4689999999753 7999999999999999999999999999999999999888853
Q ss_pred ccCchHHHHHHHHHHHhcCCeEEEeccCccccccCccccccC------C-----------ChhHHH----H---------
Q 020993 202 TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA------P-----------NKEEFH----Q--------- 251 (319)
Q Consensus 202 ~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~------~-----------~~~~~~----~--------- 251 (319)
..+.+++|++++.+++ +++|+|||+||||+||||.+|... + ....+. .
T Consensus 347 -~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (589)
T TIGR03104 347 -SHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFGGYHWYPPLAAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSG 424 (589)
T ss_pred -CchHHHHHHHHHHHhC-CCeEEeecCchHhcccCcHhHHHHHhhccCchHHHHHHHhccCHHHHHHHhhhhhhccchhH
Confidence 2345778889988775 799999999999999999876421 0 000000 0
Q ss_pred HHH----H------HHHH---------hhhhhccccchhhhccCceeccccCCHHHHHHHhcCCccccccCCCcchhHHH
Q 020993 252 ETC----R------KIKA---------LHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVWEFSYIVLHF 312 (319)
Q Consensus 252 ~~~----~------~~~~---------l~~~~l~r~dr~~~~~gve~r~Pfld~~lve~~~~lp~~~k~~~~~~~~~~r~ 312 (319)
++. . .+++ +....|.+.||++|++|||+|+||||++|||||.+||+++|++++ .|.+||.
T Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa~svE~R~PFLD~~lve~a~~lP~~~k~~~~-~K~iLR~ 503 (589)
T TIGR03104 425 EFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMAWGLEARVPFLDHELVELAARIPPELKLADG-GKGVLKE 503 (589)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhhccccccCCccCHHHHHHHHhCCHHHhcCCC-cCHHHHH
Confidence 000 0 0111 011125678999999999999999999999999999999999986 5666666
Q ss_pred hhhcc
Q 020993 313 ILWPL 317 (319)
Q Consensus 313 ~~~~~ 317 (319)
+++++
T Consensus 504 a~~~~ 508 (589)
T TIGR03104 504 AARGV 508 (589)
T ss_pred HHhhh
Confidence 66543
No 6
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=4.2e-62 Score=468.89 Aligned_cols=304 Identities=43% Similarity=0.666 Sum_probs=252.3
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc----------------------------
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------- 52 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~---------------------------- 52 (319)
+|+|||||++||..+++++++|||+|+|||||+.. ++.++||||+++|+..
T Consensus 116 ~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~ 194 (467)
T TIGR01536 116 RLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTF 194 (467)
T ss_pred HcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHHhccccCcCCCCHHHHHHHhccCccCCCCcc
Confidence 58999999999999999999999999999999985 7889999999988642
Q ss_pred cccceeeCCCcEEEecCC---eEEEeeCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHH
Q 020993 53 CERFISFPPGHIYSSKQG---GLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAV 129 (319)
Q Consensus 53 ~~~i~~l~pG~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~ 129 (319)
+++|++|||||+++++.+ ..++||.+. . ....+.++.+++++++|.+||++|+.+++|+|++||||+|||+|+++
T Consensus 195 ~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~ 272 (467)
T TIGR01536 195 FRGVFELEPGHDLPLEDDGLNIERYYWERR-D-EHTDSEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAI 272 (467)
T ss_pred cCCcEEcCCCeEEEEeCCCceEEEEecCCC-C-CCCCCHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHH
Confidence 478999999999988632 244566532 1 12223455688999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhcCCCcceeeccCCC---CccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcCccCch
Q 020993 130 ASRYLADSEAACQWGSQLHSFCIGLEG---SPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS 206 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~t~~~~~---~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 206 (319)
+++...+ .++.+||+++++ .+|..+|+++|+++|++|+++.++++++.+.+++.+++++.|.. ....
T Consensus 273 a~~~~~~--------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~~~~p~~--~~~~ 342 (467)
T TIGR01536 273 ARREAPR--------GPVHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYHLEDPTT--IRAS 342 (467)
T ss_pred HHHhcCC--------CCceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHhhCCCCC--CchH
Confidence 9876521 268999998873 36788999999999999999999999999999999998887752 3446
Q ss_pred HHHHHHHHHHHhcCCeEEEeccCccccccCccccccCCChhHHHHHHH-HHHHHhhhhhccccchhhhccCceeccccCC
Q 020993 207 TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETC-RKIKALHLYDCLRANKSTSAWGVEARVPFLD 285 (319)
Q Consensus 207 ~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~r~dr~~~~~gve~r~Pfld 285 (319)
+++|++++.|++.|++|++||+||||+|+||.+|...+....+.++.. .+++.....++.+.||++|++|+|+|+||||
T Consensus 343 ~~~~~l~~~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD 422 (467)
T TIGR01536 343 IPLYLLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALREELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLD 422 (467)
T ss_pred HHHHHHHHHHHhcCCEEEEecCcchhcccCchhhhhccccHHHHHHHHHHHHHHhCcccchhHHHHHhhccccccCCcCC
Confidence 778899999999999999999999999999998876543333322222 2344444456777799999999999999999
Q ss_pred HHHHHHHhcCCccccccCCCcchhHHHhhhcc
Q 020993 286 KEFINTAMSIDPEWKMVWEFSYIVLHFILWPL 317 (319)
Q Consensus 286 ~~lve~~~~lp~~~k~~~~~~~~~~r~~~~~~ 317 (319)
++||+|+++||+++|++++..|.+||.+++++
T Consensus 423 ~~lv~~a~~lp~~~k~~~~~~K~iLR~a~~~~ 454 (467)
T TIGR01536 423 HELVEYALSIPPEMKLRDGKEKYLLREAFEGY 454 (467)
T ss_pred HHHHHHHHhCCHHHhcCCCCcHHHHHHHHhhh
Confidence 99999999999999999988888888888764
No 7
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-60 Score=456.68 Aligned_cols=302 Identities=40% Similarity=0.652 Sum_probs=258.2
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-----cccceeeCCCcEEEecCCe-EEE
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-----CERFISFPPGHIYSSKQGG-LRR 74 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-----~~~i~~l~pG~~l~~~~~~-~~~ 74 (319)
+|+|||||++||..+++|+++|||+|+|||||+.. ++.++||||+|+|+.+ +++|++|||||.++++.++ +.+
T Consensus 117 ~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~faSE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~~~~ 195 (542)
T COG0367 117 HLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRR 195 (542)
T ss_pred HhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEEechhhhhhCCcccccCCeEEcCCCcEEEEcCCCceee
Confidence 58999999999999999999999999999999985 6779999999999999 9999999999999997655 899
Q ss_pred eeCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccC
Q 020993 75 WYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL 154 (319)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~ 154 (319)
||.+.+.... .+.++..++++++|.++|++|+.+++|+|++||||+|||+|++++++..... ..+|||+++
T Consensus 196 y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a~~~~~~~--------~~~~fsvg~ 266 (542)
T COG0367 196 YWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAAEELGKE--------GKTTFTVGF 266 (542)
T ss_pred eecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHHHHhcccc--------ceeeeEeec
Confidence 9998776433 3456678999999999999999999999999999999999999999886431 223599999
Q ss_pred CCCc--cHHHHHHHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccc
Q 020993 155 EGSP--DLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (319)
Q Consensus 155 ~~~~--e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~De 232 (319)
+++. |.++|+++|+.+|++|+.+.++++++.+.+++++++.+.|+. +...+++|++++.+++.|.+|++||+||||
T Consensus 267 ~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADE 344 (542)
T COG0367 267 EDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVVKALDTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADE 344 (542)
T ss_pred CCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhcCCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHH
Confidence 9774 999999999999999999999999999999999999999975 556789999999999999999999999999
Q ss_pred cccCc-cccccCCChhH-HHHHHHHHHHHhhhhhccccchhhhccCceeccccCCHHHHHHHhcCCccccccCC---Ccc
Q 020993 233 IFGGY-LYFHKAPNKEE-FHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVWE---FSY 307 (319)
Q Consensus 233 lf~Gy-~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~r~dr~~~~~gve~r~Pfld~~lve~~~~lp~~~k~~~~---~~~ 307 (319)
+|||| +++...+.... +.+++.+++......++.|++++.|++|+|.|.||+|.+++.+++++|+..++..+ .++
T Consensus 345 lFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~~E~r~p~ld~~~~~l~l~~~~~~~i~~~~~m~~~ 424 (542)
T COG0367 345 LFGGYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAAAFGVEARVPFLDRELVDLALKIPPEHKLNRDRSMAKK 424 (542)
T ss_pred HhcCCchhhhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccCchHHHHHHHHhcCCcccccchhhhhhhh
Confidence 99999 45544444322 33344444444444445789999999999999999999999999999999999885 455
Q ss_pred hhHHHhh
Q 020993 308 IVLHFIL 314 (319)
Q Consensus 308 ~~~r~~~ 314 (319)
+.+|..+
T Consensus 425 le~Rvpf 431 (542)
T COG0367 425 LERRVPF 431 (542)
T ss_pred hheeccc
Confidence 5555443
No 8
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=2.9e-57 Score=449.40 Aligned_cols=304 Identities=26% Similarity=0.438 Sum_probs=239.6
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc---------------------------c
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------C 53 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~---------------------------~ 53 (319)
+|+|||||++||..+++++++|||+|+|||||+...++.++||||+++|+.. +
T Consensus 118 ~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~ 197 (628)
T TIGR03108 118 RFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIF 197 (628)
T ss_pred HcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchh
Confidence 5899999999999999999999999999999987445679999999998652 4
Q ss_pred ccceeeCCCcEEEecCC----eEEEeeCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHH
Q 020993 54 ERFISFPPGHIYSSKQG----GLRRWYNPPCYSEQIPSNPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAV 129 (319)
Q Consensus 54 ~~i~~l~pG~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~ 129 (319)
++|++|||||+++++.+ +.++||++...+....+.++.+++++++|.+||+.|+.+++|+|++||||+|||+|+++
T Consensus 198 ~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~ 277 (628)
T TIGR03108 198 KGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVAL 277 (628)
T ss_pred cCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHH
Confidence 79999999999988632 34689997643212223455678999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhcCCCcceeeccCCC--CccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcCccCchH
Q 020993 130 ASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAST 207 (319)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 207 (319)
+++... .+++|||+++++ .+|..+|+++|+++|++|+++.+++++ .+.++.++++.++|.. ..+..
T Consensus 278 ~~~~~~---------~~i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~~-~~~~~~~~~~~~~P~~--~~~~~ 345 (628)
T TIGR03108 278 MAGLSD---------TPVNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPDD-FSLVDRLAGLYDEPFA--DSSAL 345 (628)
T ss_pred HHHhcC---------CCCcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHHH-HHHHHHHHHHhCCCCC--CchHH
Confidence 887542 468999999875 489999999999999999999999877 5677888887777752 22356
Q ss_pred HHHHHHHHHHhcCCeEEEeccCccccccCccccccC----------C----------------Ch--------h--H---
Q 020993 208 PMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA----------P----------------NK--------E--E--- 248 (319)
Q Consensus 208 ~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~----------~----------------~~--------~--~--- 248 (319)
++|.+++.+++ +++|+|||+||||+|+||++|... + .. . .
T Consensus 346 ~~~~~~~~a~~-~~kV~LsG~GgDElf~GY~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (628)
T TIGR03108 346 PTYRVCELARK-RVTVALSGDGGDELFAGYRRYRWHMAEERVRGILPLGLRRPLFGTLGRLYPKADWAPRMLRAKTTFQA 424 (628)
T ss_pred HHHHHHHHHHC-CCCEEEeccchhhcccCcHHHHHHHHHHHHhhhCCHHHHHHHHHHHHhhCcccccchhhhhhhhhHhh
Confidence 77888887765 799999999999999999754310 0 00 0 0
Q ss_pred --------H-H------HHHHHH-----------------H-H-------------Hhhh---------hhccccchhhh
Q 020993 249 --------F-H------QETCRK-----------------I-K-------------ALHL---------YDCLRANKSTS 273 (319)
Q Consensus 249 --------~-~------~~~~~~-----------------~-~-------------~l~~---------~~l~r~dr~~~ 273 (319)
+ . .+.... + . .+.. ..+.+.||++|
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lL~~~Dr~sM 504 (628)
T TIGR03108 425 LARDPLEGYFHSVSVLDNALRRQLFSPDFRRELQGYRAIEVLRRHAARAPTDDALSLAQYLDLKTYLPGDILTKVDRASM 504 (628)
T ss_pred hhcchHHHHHHHhhhcChHHHHHHHHHHhhhhcccCCHHHHHHHHhccccCCCHHHHHHHHHHHHhCccccccccCccch
Confidence 0 0 000000 0 0 0000 01335799999
Q ss_pred ccCceeccccCCHHHHHHHhcCCccccccCCCcchhHHHhhhcc
Q 020993 274 AWGVEARVPFLDKEFINTAMSIDPEWKMVWEFSYIVLHFILWPL 317 (319)
Q Consensus 274 ~~gve~r~Pfld~~lve~~~~lp~~~k~~~~~~~~~~r~~~~~~ 317 (319)
++|||+|+||||++|||||++||+++|++++..|.++|.++++.
T Consensus 505 a~svE~R~PFLD~~lve~a~slP~~~k~~~~~~K~iLR~a~~~~ 548 (628)
T TIGR03108 505 AHGLEVRVPLLDHRLVEWAAGLPPDLKLRGGEGKYLLKKAMRPY 548 (628)
T ss_pred hccccccCCCCCHHHHHHHHhCCHHHhcCCCCchHHHHHHHHhh
Confidence 99999999999999999999999999999988888888887653
No 9
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=1.9e-39 Score=290.77 Aligned_cols=211 Identities=43% Similarity=0.684 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHHHHHHhCCc
Q 020993 96 RKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTR 173 (319)
Q Consensus 96 ~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~va~~lg~~ 173 (319)
+++|.+||++|+.+++|+|++||||+|||+|++++++... .++.+||+++. +.+|..+|+++|+++|++
T Consensus 1 r~~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~ 71 (269)
T cd01991 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP---------EPVKTFSIGFGFEGSDEREYARRVAEHLGTE 71 (269)
T ss_pred ChHHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC---------CCCceEEEeeCCCCCChHHHHHHHHHHhCCc
Confidence 3689999999999999999999999999999999988753 34788888765 456799999999999999
Q ss_pred ceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCccccccCCCh-------
Q 020993 174 HHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK------- 246 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~~~------- 246 (319)
|+++.++.+++.+.++..++..+.|.. ..+..+++.+++.+++.|++|++||+||||+|+||.++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~ 149 (269)
T cd01991 72 HHEVEFTPADLLAALPDVIWELDEPFA--DSSAIPLYLLSRLARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRL 149 (269)
T ss_pred ceEEEcCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHHHHHHHHhCCEEEEecCCccccccChHHHHHHHHHhhccccC
Confidence 999999998888888888777776653 33456778899999999999999999999999999876532110
Q ss_pred -------------hHHHHHHHHHHHHhhhh--------------------hccccchhhhccCceeccccCCHHHHHHHh
Q 020993 247 -------------EEFHQETCRKIKALHLY--------------------DCLRANKSTSAWGVEARVPFLDKEFINTAM 293 (319)
Q Consensus 247 -------------~~~~~~~~~~~~~l~~~--------------------~l~r~dr~~~~~gve~r~Pfld~~lve~~~ 293 (319)
..+.+.+...+..+... .+.+.|+++|++|+|+|+||||.+||||++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~ 229 (269)
T cd01991 150 LGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFAL 229 (269)
T ss_pred cchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhcccccCCCCCHHHHHHHH
Confidence 00111111112222111 145689999999999999999999999999
Q ss_pred cCCccccccCCCcchhHHHhhhcc
Q 020993 294 SIDPEWKMVWEFSYIVLHFILWPL 317 (319)
Q Consensus 294 ~lp~~~k~~~~~~~~~~r~~~~~~ 317 (319)
++|+++|+.++..|.++|.+++++
T Consensus 230 ~lP~~~k~~~~~~K~iLR~a~~~~ 253 (269)
T cd01991 230 SLPPELKIRGGREKYLLREAAAGL 253 (269)
T ss_pred cCCHHHhcCCCCchHHHHHHHHhh
Confidence 999999999998888888877653
No 10
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=100.00 E-value=2.4e-38 Score=280.72 Aligned_cols=216 Identities=34% Similarity=0.579 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCc--cHHHHHHHHHHhC
Q 020993 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSP--DLKAAREVADYLG 171 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--e~~~A~~va~~lg 171 (319)
||+++|.+||++|+.++.++++.||||+||++|++++++.. +.++++||+++++.. |..+|+++|+++|
T Consensus 1 ~~r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~---------~~~~~~~t~~~~~~~~~e~~~a~~va~~~~ 71 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQG---------GPPIKTFTIGFEDDDYDEREYARKVARHLG 71 (255)
T ss_dssp HHHHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTC---------CSEEEEEEEECSSCC--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhh---------CCceeEEEEEcCCCcchhHHHHHHHhcccc
Confidence 68999999999999999999999999999999999999833 358999999998776 9999999999999
Q ss_pred CcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCccccccCCCh----h
Q 020993 172 TRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK----E 247 (319)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~~~----~ 247 (319)
++|+.+.++.+++.+.+++.++..+.|.........+.+.+++.+++.|+++++||+||||+|+||+.+...... .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~ 151 (255)
T PF00733_consen 72 LEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLG 151 (255)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHH
T ss_pred cccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccccccchHhHHHHhhhhhhh
Confidence 999999999999988899988888877631122345667788888888999999999999999999766532211 1
Q ss_pred HHHHHHHHHH------------------------HHhhhhhccccchhhhccCceeccccCCHHHHHHHhcCCccccccC
Q 020993 248 EFHQETCRKI------------------------KALHLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVW 303 (319)
Q Consensus 248 ~~~~~~~~~~------------------------~~l~~~~l~r~dr~~~~~gve~r~Pfld~~lve~~~~lp~~~k~~~ 303 (319)
.....+...+ ..+....+.+.+++++.+|+|+|.||||.+||+||+++|.++|+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~~~ 231 (255)
T PF00733_consen 152 RLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRFDG 231 (255)
T ss_dssp HHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCCET
T ss_pred hhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecCHHHHHHHHhCCHHHHcCC
Confidence 1111111111 1222233456788999999999999999999999999999999999
Q ss_pred CCcchhHHHhhhccC
Q 020993 304 EFSYIVLHFILWPLA 318 (319)
Q Consensus 304 ~~~~~~~r~~~~~~~ 318 (319)
+..|.++|.+++.+.
T Consensus 232 ~~~K~llR~a~~~~l 246 (255)
T PF00733_consen 232 GIYKYLLREAMKDLL 246 (255)
T ss_dssp TECTHHHHHHHTCCS
T ss_pred CCCcHHHHHHHHhhC
Confidence 998999999887653
No 11
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-37 Score=280.32 Aligned_cols=306 Identities=21% Similarity=0.289 Sum_probs=218.9
Q ss_pred cceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCeEEEeeCCCCC
Q 020993 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWYNPPCY 81 (319)
Q Consensus 2 l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~~~~~~~~~~~ 81 (319)
++|.|+|++||.+.++||+.||++|+++|-|...+.+..+..|.... ....|+++||+........-.-.|.+....
T Consensus 114 ~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g~---~~~~i~e~~~~F~~~~~d~~~w~y~s~~le 190 (520)
T KOG0573|consen 114 LQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVGT---SGKLIYEVPPVFRNKLTDRVPWPYLSTKLE 190 (520)
T ss_pred ccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeecccc---CCccccccCchhhhccCCccccccccceec
Confidence 68999999999999999999999999999999864443332232221 124577999994443322101011110000
Q ss_pred C---CCCCCC-------------CccHHHHHHHHHHHHHHHHh-------h--------CCCeEEeecCcccHHHHHHHH
Q 020993 82 S---EQIPSN-------------PYDPLVLRKAFEKAVVKRLM-------T--------DVPFGVLLSGGLDSSLVAAVA 130 (319)
Q Consensus 82 ~---~~~~~~-------------~~~~~~l~~~l~~av~~rl~-------~--------~~~v~v~LSGGlDSs~iaa~~ 130 (319)
. ++.+.. .+.+..+.+.+.++++.|.. + ..+|+|++|||+||++||.++
T Consensus 191 ~~~~~s~~p~~~i~~~~l~~~~~~~~v~~l~~~l~ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~ 270 (520)
T KOG0573|consen 191 NSLGPSLPPLCDISEIFLNQSHRSEVVSGLHTGLRDSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLA 270 (520)
T ss_pred ccCCCcCCCccchHHHHhhhHHHHHHHhhhHHHHHHHHhhhhhccChhHhhhccccccccCcEEEEecCCchHHHHHHHH
Confidence 0 011111 12345677778888877642 1 268999999999999999999
Q ss_pred HHHhhhhhhhhhcCCCcceeeccCC---C-----CccHHHHHHHHHHhCC-------cceEEEeChhHHHHHHHHHHHhh
Q 020993 131 SRYLADSEAACQWGSQLHSFCIGLE---G-----SPDLKAAREVADYLGT-------RHHEFHFTVQEGIDALEEVIYHI 195 (319)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~t~~~~---~-----~~e~~~A~~va~~lg~-------~~~~~~~~~~~~~~~~~~~~~~~ 195 (319)
....+.. .++...++.|. . .+|+..+++-++.|.. ....++++-+++.+.-+. +.++
T Consensus 271 h~~vp~n-------e~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~-I~~L 342 (520)
T KOG0573|consen 271 HYVVPEN-------EPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEH-IKHL 342 (520)
T ss_pred HhhcCCC-------CceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHH-HHHh
Confidence 9887653 56777777773 2 2788888888887764 334556677776655444 5555
Q ss_pred ccCCcCccC--chHHHHHHHH----------HHHhcCCeEEEeccCccccccCccccccCC---ChhHHHHHHHHHHHHh
Q 020993 196 ETYDVTTIR--ASTPMFLMSR----------KIKSLGVKMVISGEGSDEIFGGYLYFHKAP---NKEEFHQETCRKIKAL 260 (319)
Q Consensus 196 e~~~~~~~~--~~~~~~~l~~----------~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~---~~~~~~~~~~~~~~~l 260 (319)
-.|..+.++ .+.++|+.++ .-+ ..++|+++|.||||+||||.+|+... ....+.+|+..++.++
T Consensus 343 iyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~-s~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~rI 421 (520)
T KOG0573|consen 343 IYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYR-SYARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLFRI 421 (520)
T ss_pred hCcCccccccccceEEEEeeccccccccCccccc-cccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHhhh
Confidence 555433222 2345666665 222 35799999999999999999887432 2245889999999999
Q ss_pred hhhhccccchhhhccCceeccccCCHHHHHHHhcCCccccccCCC---cchhHHHhhhccCC
Q 020993 261 HLYDCLRANKSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVWEF---SYIVLHFILWPLAV 319 (319)
Q Consensus 261 ~~~~l~r~dr~~~~~gve~r~Pfld~~lve~~~~lp~~~k~~~~~---~~~~~r~~~~~~~~ 319 (319)
..+|+.|+||+...+|+|+|+||||..||+|..++|...|+..+. +|+++|...+.||.
T Consensus 422 s~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l~~~~k~~l~l~GG~KlllRe~~~~lGl 483 (520)
T KOG0573|consen 422 SHRNLGRDDRVIADSGKEVRSPFLDENVVKLSNALPVSVKMMLGLRGGEKLLLREAGRRLGL 483 (520)
T ss_pred hhcccCccchhhhccCceEeccchHHHHHHHHHhcchhHHhhhcccchhhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999987664 99999999999984
No 12
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.84 E-value=9.8e-21 Score=160.77 Aligned_cols=85 Identities=36% Similarity=0.734 Sum_probs=76.3
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhcc-ccceeeCCCcEEEecCCeEEEeeCCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDC-ERFISFPPGHIYSSKQGGLRRWYNPP 79 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~-~~i~~l~pG~~l~~~~~~~~~~~~~~ 79 (319)
+|+|||||+|||.++++++++|||+|++||||++..++.++||||+|+|...| +.+..+||||++.. .+.+++|++|.
T Consensus 124 ~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~ 202 (224)
T cd01910 124 DLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPM 202 (224)
T ss_pred hcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCC
Confidence 58999999999999999999999999999999976578999999999999999 78999999999875 66789999998
Q ss_pred CCCCCCC
Q 020993 80 CYSEQIP 86 (319)
Q Consensus 80 ~~~~~~~ 86 (319)
|....+|
T Consensus 203 ~~~~~vp 209 (224)
T cd01910 203 NKLKAVP 209 (224)
T ss_pred chhhcCC
Confidence 8644444
No 13
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.83 E-value=1.4e-20 Score=159.17 Aligned_cols=75 Identities=27% Similarity=0.511 Sum_probs=65.3
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc------------------cccceeeCCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD------------------CERFISFPPG 62 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~------------------~~~i~~l~pG 62 (319)
+|+|||||+|||++ ++|+++|||+|+|||||+. . +.++||||+|+|++. +++|++||||
T Consensus 100 ~L~G~FAfai~D~~-~~L~laRDr~GikPLYy~~-~-~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG 176 (199)
T cd01909 100 LAEGDFCFFIEDGN-GRLTLATDHAGSVPVYLVQ-A-GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPG 176 (199)
T ss_pred HcCEEEEEEEEcCC-CEEEEEECCCCCcCeEEEE-C-CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCC
Confidence 58999999999999 9999999999999999987 4 789999999999753 5799999999
Q ss_pred cEEEecC-------CeEEEeeCC
Q 020993 63 HIYSSKQ-------GGLRRWYNP 78 (319)
Q Consensus 63 ~~l~~~~-------~~~~~~~~~ 78 (319)
|++.++. ...++||.|
T Consensus 177 ~~l~~~~~g~~~~~~~~~~yW~p 199 (199)
T cd01909 177 TVNVLTFDGGSYGTAESRRTWTP 199 (199)
T ss_pred cEEEEeeCCcccceEEEEEeecC
Confidence 9996631 146789976
No 14
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.70 E-value=4.9e-17 Score=141.43 Aligned_cols=76 Identities=41% Similarity=0.782 Sum_probs=67.6
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc---------------------------c
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD---------------------------C 53 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~---------------------------~ 53 (319)
+|+|+|||++||.++++++++|||+|.+||||+.. ++.++||||+++|+.. +
T Consensus 116 ~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~ 194 (220)
T cd00712 116 RLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIF 194 (220)
T ss_pred HhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchh
Confidence 47999999999999999999999999999999986 6789999999999763 3
Q ss_pred ccceeeCCCcEEEecCC--eEEEeeC
Q 020993 54 ERFISFPPGHIYSSKQG--GLRRWYN 77 (319)
Q Consensus 54 ~~i~~l~pG~~l~~~~~--~~~~~~~ 77 (319)
++|++|||||+++++.+ +.++||+
T Consensus 195 ~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 195 KGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred cCceEECCceEEEEECCCeEEeeeCC
Confidence 69999999999998754 5678984
No 15
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.62 E-value=4.6e-15 Score=121.79 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=84.1
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceee--ccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~ 189 (319)
.+.|++|||+||+++++++.+... .++.+++ .++....+.+.++++|+. |+++..+.++..+..+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHH
Confidence 478999999999999999987642 1444444 455444467899999999 8888777777655443322
Q ss_pred HHH-HhhccCCcCccCc-hHHHHHHHHHHHhcCCeEEEeccCccccccCccccccCCC
Q 020993 190 EVI-YHIETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 245 (319)
Q Consensus 190 ~~~-~~~e~~~~~~~~~-~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~~ 245 (319)
..+ ...+.|. ..+ ......+.+.|++.|++++++|+++||+|+||++++..+.
T Consensus 73 ~~l~~~~~~p~---~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~Gy~~~~~~~~ 127 (154)
T cd01996 73 ARFKAKVGDPC---WPCDTAIFTSLYKVALKFGIPLIITGENPAQEFGGIREEEGGII 127 (154)
T ss_pred HHHhcccCCCC---hhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcccccccccchh
Confidence 221 1223332 222 2334566778889999999999999999999998876543
No 16
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.60 E-value=1.5e-14 Score=133.62 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=87.8
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCc--ceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQL--HSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~ 188 (319)
-.+.|++|||+||+.+++++++... .++ .|++.++....+.+.++++++++|++|+.+.++++.+.+..
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~~g---------l~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~ 130 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKKLG---------LNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQ 130 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHhC---------CceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHH
Confidence 3489999999999999988865432 233 45555665444667999999999999999999987766655
Q ss_pred HHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCccc
Q 020993 189 EEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (319)
Q Consensus 189 ~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~ 239 (319)
...+.....|...+ .......+.+.|++.|++++++|+++||+|+||..
T Consensus 131 ~~~~~~~~~pc~~c--~~~~~~~l~~~A~~~gi~~Il~G~~~dE~fgGy~~ 179 (343)
T TIGR03573 131 RAYFKKVGDPEWPQ--DHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSE 179 (343)
T ss_pred HHHHhccCCCchhh--hhHHHHHHHHHHHHhCCCEEEeCCCHHHhcCCccc
Confidence 55555444443211 12344567788999999999999999999999874
No 17
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.53 E-value=1e-14 Score=115.38 Aligned_cols=51 Identities=45% Similarity=0.702 Sum_probs=37.6
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhh
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSD 51 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~ 51 (319)
+|+|+|||++||+.+++++++|||+|+|||||++.+++.++||||+++|++
T Consensus 75 ~l~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 75 RLDGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp T--EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred hCCceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 589999999999999999999999999999999964469999999999874
No 18
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.35 E-value=1.7e-12 Score=109.08 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=49.5
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEec-CCeEEEeecchhhhhccccceeeCCCc
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL-DGSIWFASEMKALSDDCERFISFPPGH 63 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~-~~~~~fsSe~~~l~~~~~~i~~l~pG~ 63 (319)
+|+|+|||++||..+++++++|||+|+|||||++.. ++.|+|||+..... .....++||+.
T Consensus 118 ~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~--~~~~~e~~~~g 179 (181)
T cd03766 118 SIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS--GSGFQEVLAGG 179 (181)
T ss_pred hcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC--CCceEECCCCc
Confidence 589999999999999999999999999999999853 67899999965321 12456666643
No 19
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.34 E-value=6.2e-12 Score=111.48 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=81.9
Q ss_pred HHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCC--CccHHHHHHHHHHhCCcceEEEeC
Q 020993 103 VVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGTRHHEFHFT 180 (319)
Q Consensus 103 v~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~va~~lg~~~~~~~~~ 180 (319)
++..+.+..++.|++|||+||+++++++.+.+ .++.++++..+. ..|.+.|+++|+++|++|++++++
T Consensus 5 l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~g----------~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~ 74 (252)
T TIGR00268 5 LRNFLKEFKKVLIAYSGGVDSSLLAAVCSDAG----------TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKID 74 (252)
T ss_pred HHHHHHhcCCEEEEecCcHHHHHHHHHHHHhC----------CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcH
Confidence 34445556789999999999999999998763 467888876543 347789999999999999998875
Q ss_pred hhHHHHHHHHHHHhhccCCcCccCchHH-HHHHHHHHHhcCCeEEEeccCccccccCcc
Q 020993 181 VQEGIDALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (319)
Q Consensus 181 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~ 238 (319)
. +.+.+ .. ..+. .+..+... +..+.+.|++.|+++++||+++|+++.+++
T Consensus 75 ~--~~~~~---~~--n~~~-~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rp 125 (252)
T TIGR00268 75 K--MINPF---RA--NVEE-RCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRP 125 (252)
T ss_pred H--HHHHH---Hh--CCCc-ccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccH
Confidence 3 22111 11 1111 11111122 234567788899999999999999986544
No 20
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.34 E-value=8.9e-12 Score=106.70 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=83.0
Q ss_pred hhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCC--ccHHHHHHHHHHhCCcceEEEeChhHHH
Q 020993 108 MTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVADYLGTRHHEFHFTVQEGI 185 (319)
Q Consensus 108 ~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~e~~~A~~va~~lg~~~~~~~~~~~~~~ 185 (319)
.+...+.|++|||+|||+++.+|.+... .++.++|+..+-. .+.+.|+..|+.+|+.|.++.++..+
T Consensus 15 k~~~kv~vAfSGGvDSslLa~la~~~lG---------~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~-- 83 (269)
T COG1606 15 KEKKKVVVAFSGGVDSSLLAKLAKEALG---------DNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD-- 83 (269)
T ss_pred hhcCeEEEEecCCccHHHHHHHHHHHhc---------cceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc--
Confidence 3344799999999999999999988763 5789999877643 37889999999999999999876422
Q ss_pred HHHHHHHHhhccCCcCccCch-HHHHHHHHHHHhcCCeEEEeccCccccccCccc
Q 020993 186 DALEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (319)
Q Consensus 186 ~~~~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~ 239 (319)
++..+..+.+ +.-+- ...-.+-+.|.+.|.+++++|-.+|+++++-|-
T Consensus 84 ---~~~~~n~~~r---CY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RPG 132 (269)
T COG1606 84 ---PEFKENPENR---CYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRPG 132 (269)
T ss_pred ---hhhccCCCCc---chHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCcc
Confidence 2333222222 11111 112245577888999999999999999985443
No 21
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.28 E-value=4.4e-11 Score=105.87 Aligned_cols=133 Identities=23% Similarity=0.285 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCC--CccHHHHHHHHHHh
Q 020993 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYL 170 (319)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~va~~l 170 (319)
+.+...|++.++.. ....+.+.||||+||+++++++.+...+ .++.++++.... ..|.+.|+++|+++
T Consensus 8 ~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~~~~--------~~v~~~~~~~~~~~~~~~~~a~~~a~~l 77 (248)
T cd00553 8 NALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRALGR--------ENVLALFMPSRYSSEETREDAKELAEAL 77 (248)
T ss_pred HHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHHhCc--------ccEEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 34444444444432 2357999999999999999999987632 368888887653 45889999999999
Q ss_pred CCcceEEEeChhHHHHHHHHHHHhh--ccCCcC---ccCchHHHHHHHHHHHhcCCeEEEeccCccccccCcc
Q 020993 171 GTRHHEFHFTVQEGIDALEEVIYHI--ETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (319)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~--e~~~~~---~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~ 238 (319)
|++|+++++++ ..+.+...+... ..+... .+.+.+-+..+...|.+.|+.|+-||+ .+|++.||.
T Consensus 78 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G~~ 147 (248)
T cd00553 78 GIEHVNIDIDP--AVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLGYF 147 (248)
T ss_pred CCeEEEeccHH--HHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhCCe
Confidence 99999988654 233322222211 111110 111112234456677788988888987 778888985
No 22
>PRK14561 hypothetical protein; Provisional
Probab=99.26 E-value=4.2e-11 Score=101.83 Aligned_cols=106 Identities=25% Similarity=0.317 Sum_probs=77.5
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEV 191 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~ 191 (319)
++++++|||+||+++++++.+.. + ..+.+++.++ .+|.++|+++|+.+|++|+.+.++.+ ..+...+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~~-~--------v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~-~~~~~~~~ 69 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY-D--------VELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDRE-ILEKAVDM 69 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC-C--------eEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHH
Confidence 48999999999999999886641 1 2345666665 35789999999999999999998865 46666666
Q ss_pred HHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCcccc
Q 020993 192 IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 192 ~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
++.++.|...+ ..+..+++.. ++ .|+.++++|+..|.+
T Consensus 70 ~~~~~~P~~~~--~~l~~~~l~~-~a-~g~~~Ia~G~n~DD~ 107 (194)
T PRK14561 70 IIEDGYPNNAI--QYVHEHALEA-LA-EEYDVIADGTRRDDR 107 (194)
T ss_pred HHHcCCCCchh--HHHHHHHHHH-HH-cCCCEEEEEecCCCc
Confidence 77777665321 1233344444 33 789999999999984
No 23
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.26 E-value=1.9e-11 Score=108.43 Aligned_cols=71 Identities=31% Similarity=0.412 Sum_probs=61.8
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEecCCeEE
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLR 73 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~~~~ 73 (319)
+|+|+|++++||. ++++++||++|++||||+...++.++||||.++|... .+.+++||||+++.++.+.+.
T Consensus 153 ~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~ 224 (252)
T cd00715 153 RVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLE 224 (252)
T ss_pred hccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceE
Confidence 4789999999998 8899999999999999998533789999999999875 678999999999998755443
No 24
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.23 E-value=8.1e-11 Score=111.55 Aligned_cols=116 Identities=23% Similarity=0.278 Sum_probs=79.8
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCeEEEe-eCCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRW-YNPP 79 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~~~~~-~~~~ 79 (319)
+|+|+|||++.+. ++++++|||+|+|||||.+ . +.++||||.++|....+.|+.|+||+++.++.+.++.+ +.+.
T Consensus 154 ~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~-~-~~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~~~~~~~~~ 229 (442)
T PRK08341 154 EVKGAYSVAILFD--GKIIVARDPVGFRPLSYGE-G-DGHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEVESKVLARE 229 (442)
T ss_pred hccCceEEEEEEC--CEEEEEEcCCCceEEEEEE-C-CEEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCceEEEeeccC
Confidence 5899999999985 7899999999999999997 3 45899999999998888999999999998875533321 1110
Q ss_pred CCCC--------CCCC---CCccHHHHHHHHHHHHHHHHhh--CCCeEEeecCc
Q 020993 80 CYSE--------QIPS---NPYDPLVLRKAFEKAVVKRLMT--DVPFGVLLSGG 120 (319)
Q Consensus 80 ~~~~--------~~~~---~~~~~~~l~~~l~~av~~rl~~--~~~v~v~LSGG 120 (319)
.... ..|+ ....+.+.|..+-+........ |.-+++..||-
T Consensus 230 ~~~~C~fe~iYfarpds~~~g~~v~~~R~~~G~~La~~~~~~~D~Vv~VPdsg~ 283 (442)
T PRK08341 230 KHHHCVFEYIYFARPDSVIDGVSVYSARYRMGVELARESPAEGDVVIAVPDSGR 283 (442)
T ss_pred CCccceEEEEEecCCccccCCcCHHHHHHHHHHHhhcccCCCCceEEEecCchH
Confidence 0000 1121 1223556666666665554432 33356666666
No 25
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.23 E-value=1.1e-10 Score=112.17 Aligned_cols=116 Identities=24% Similarity=0.314 Sum_probs=83.0
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEecCC--eEEEeeC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQG--GLRRWYN 77 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~--~~~~~~~ 77 (319)
+|+|+|||+++|. ++++++||++|+|||||.+. ++.++||||.++|... .+.|+.|+||+++.++.+ +..++|.
T Consensus 183 ~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~~~~ 259 (510)
T PRK07847 183 TVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTRFAE 259 (510)
T ss_pred HhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEeccC
Confidence 4799999999996 68999999999999999986 6779999999999876 688999999999998654 3444554
Q ss_pred CCCCC---C----CCCC---CCccHHHHHHHHHHHHHHHHhhC--CCeEEeecC
Q 020993 78 PPCYS---E----QIPS---NPYDPLVLRKAFEKAVVKRLMTD--VPFGVLLSG 119 (319)
Q Consensus 78 ~~~~~---~----~~~~---~~~~~~~l~~~l~~av~~rl~~~--~~v~v~LSG 119 (319)
+.... + ..|+ ....+.+.|..+-+.+.+....+ .=+.|..||
T Consensus 260 ~~~~~C~fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG 313 (510)
T PRK07847 260 PTPKGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313 (510)
T ss_pred CCCCCCeEEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCch
Confidence 32110 0 1222 23346677777766666554322 224556664
No 26
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.22 E-value=1.8e-10 Score=110.44 Aligned_cols=121 Identities=26% Similarity=0.356 Sum_probs=83.1
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEecCCe-EEEe--e
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGG-LRRW--Y 76 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~~-~~~~--~ 76 (319)
+|+|+|||++|+. ++++++|||+|+|||||.+. ++.++||||.++|... .+.++.|+||+.+.++... ++.+ .
T Consensus 174 ~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~ 250 (479)
T PRK09123 174 QVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPF 250 (479)
T ss_pred HhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEec
Confidence 4899999999986 68999999999999999985 6789999999999654 5678999999999886433 4332 2
Q ss_pred CCCCCCC--------CCCC---CCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHH
Q 020993 77 NPPCYSE--------QIPS---NPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVA 127 (319)
Q Consensus 77 ~~~~~~~--------~~~~---~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~ia 127 (319)
....... ..|+ ....+-++|+.+.+.+.+....+.. .+.+=.||+..+
T Consensus 251 ~~~~~~~C~FE~VYfarPdS~~~g~~vy~~R~~~g~~La~~~~~~~D---~Vv~VP~sg~~~ 309 (479)
T PRK09123 251 PPQPARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDAD---VVVPVPDSGVPA 309 (479)
T ss_pred CCCCCCCChhheEEecCCCceECCeEHHHHHHHHHHHHHHhCCCCCe---EEEEcCccHHHH
Confidence 2110000 1121 2334678888888888776543222 233444555443
No 27
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.22 E-value=1.6e-10 Score=110.31 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=82.2
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEecCCeEEEeeC-C
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRRWYN-P 78 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~~~~~~~~-~ 78 (319)
+|+|+|||++.+. ++++++|||+|+|||||.+. ++.++||||.++|... .+.|+.|+||+++.+++..++.++. +
T Consensus 171 ~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~ 247 (474)
T PRK06388 171 RLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLD 247 (474)
T ss_pred hccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecC
Confidence 5899999999865 78999999999999999985 6779999999999986 4579999999999886544433322 1
Q ss_pred CCCCC---------CCCC---CCccHHHHHHHHHHHHHHHHhh--CCCeEEeecC
Q 020993 79 PCYSE---------QIPS---NPYDPLVLRKAFEKAVVKRLMT--DVPFGVLLSG 119 (319)
Q Consensus 79 ~~~~~---------~~~~---~~~~~~~l~~~l~~av~~rl~~--~~~v~v~LSG 119 (319)
..... ..|+ ....+.+.|..+-+........ |.-+.|.+||
T Consensus 248 ~~~~~~C~fE~iYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~ 302 (474)
T PRK06388 248 GDKVAHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSG 302 (474)
T ss_pred CCccccceEEEEeecCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCc
Confidence 10000 1222 1234566777776666665432 3347788887
No 28
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=99.21 E-value=2.5e-10 Score=98.12 Aligned_cols=156 Identities=24% Similarity=0.317 Sum_probs=84.4
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcc--eeeccCCCCccHHHHHHHHHHhCC-cceEEEeCh-hH-----
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLH--SFCIGLEGSPDLKAAREVADYLGT-RHHEFHFTV-QE----- 183 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~--~~t~~~~~~~e~~~A~~va~~lg~-~~~~~~~~~-~~----- 183 (319)
+.+++|||+||+++++.+.+.+. .+. +|.+|+....|.+.|+++++++|+ +|++++++. .+
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~~----------~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~ 71 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEGY----------EVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSA 71 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH-S----------EEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcCC----------eEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCc
Confidence 57899999999999999887753 454 555677766799999999999999 999999872 11
Q ss_pred HHHH---HHHHHHhhccCCcCccCc--hHHHHHHHHHHHhcCCeEEEeccCccccccCccccccCCChhHHHHHHHHHHH
Q 020993 184 GIDA---LEEVIYHIETYDVTTIRA--STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIK 258 (319)
Q Consensus 184 ~~~~---~~~~~~~~e~~~~~~~~~--~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~~~~~~~~~~~~~~~ 258 (319)
+.+. +++.-...+......++. .+.+-..+..|.+.|+..++.|.-+++ +.||+..+ .+|. ..++
T Consensus 72 L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D-~~~ypDc~-----~~F~----~~~~ 141 (209)
T PF06508_consen 72 LTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAED-ASGYPDCR-----PEFI----DAMN 141 (209)
T ss_dssp HHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-S-TT--GGGS-----HHHH----HHHH
T ss_pred ccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCc-cCCCCCCh-----HHHH----HHHH
Confidence 1111 111000001111122332 222223345567789999999998877 57888643 2233 3333
Q ss_pred HhhhhhccccchhhhccCceeccccCC---HHHHHHHhcCC
Q 020993 259 ALHLYDCLRANKSTSAWGVEARVPFLD---KEFINTAMSID 296 (319)
Q Consensus 259 ~l~~~~l~r~dr~~~~~gve~r~Pfld---~~lve~~~~lp 296 (319)
.+... .+...+++..||++ .++++.+..+.
T Consensus 142 ~~~~~--------~~~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 142 RLLNL--------GEGGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp HHHHH--------HHTS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred HHHHh--------cCCCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 33321 24578899999999 57888877764
No 29
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.20 E-value=2.1e-10 Score=109.41 Aligned_cols=104 Identities=23% Similarity=0.299 Sum_probs=74.3
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEecCCeEEEee-CC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRRWY-NP 78 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~~~~~~~-~~ 78 (319)
+|+|+|||+++|. ++++++|||+|+|||||.+. ++.++||||.++|... .+-++.|+||+++.+++..++.+- .+
T Consensus 163 ~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~ 239 (475)
T PRK07631 163 MLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAP 239 (475)
T ss_pred hCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCC
Confidence 5899999999996 67999999999999999985 6789999999999655 356889999999988654333221 11
Q ss_pred CCCCC---------CCCC---CCccHHHHHHHHHHHHHHHH
Q 020993 79 PCYSE---------QIPS---NPYDPLVLRKAFEKAVVKRL 107 (319)
Q Consensus 79 ~~~~~---------~~~~---~~~~~~~l~~~l~~av~~rl 107 (319)
..... ..|+ ....+.+.|..+-+...+..
T Consensus 240 ~~~~~~C~fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~ 280 (475)
T PRK07631 240 NQNRSICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEA 280 (475)
T ss_pred CCCcccceEEEEEeecCCcccCCeEHHHHHHHHHHHHHhhC
Confidence 11100 1222 23346677777777666654
No 30
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.19 E-value=4.5e-10 Score=107.43 Aligned_cols=70 Identities=31% Similarity=0.432 Sum_probs=59.6
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEecCCeE
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGL 72 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~~~ 72 (319)
+|+|+|||++.+. ++++++|||+|+|||||....++.++||||.++|... .+.|+.|+||+.+.++.+.+
T Consensus 164 ~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~ 234 (484)
T PRK07272 164 TVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGI 234 (484)
T ss_pred HccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCce
Confidence 5899999999986 6899999999999999987435579999999999765 36788999999998875433
No 31
>PRK13980 NAD synthetase; Provisional
Probab=99.19 E-value=1.5e-10 Score=103.46 Aligned_cols=133 Identities=25% Similarity=0.275 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHHHHHHh
Q 020993 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYL 170 (319)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~va~~l 170 (319)
+++...+++.|++. ....+.+.||||+||+++++++.+.... .++.++++... ...|...|+++|+++
T Consensus 15 ~~l~~~l~~~v~~~--g~~~vvv~lSGGiDSsv~a~l~~~~~~~--------~~v~av~~~~~~~~~~~~~~a~~la~~l 84 (265)
T PRK13980 15 EIIVDFIREEVEKA--GAKGVVLGLSGGIDSAVVAYLAVKALGK--------ENVLALLMPSSVSPPEDLEDAELVAEDL 84 (265)
T ss_pred HHHHHHHHHHHHHc--CCCcEEEECCCCHHHHHHHHHHHHHhCc--------cceEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 34444555555432 2357899999999999999999887532 36788887654 335888999999999
Q ss_pred CCcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCcc
Q 020993 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (319)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~ 238 (319)
|++|+++++++ +.+.+...+..........+...+.+..+...|.+.|..|+-||+..+ ++.||.
T Consensus 85 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~sE-~~~G~~ 149 (265)
T PRK13980 85 GIEYKVIEITP--IVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKSE-LLLGYF 149 (265)
T ss_pred CCCeEEEECHH--HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHhH-HHhCCc
Confidence 99999988764 333332221100000000111123334566677788988888987654 556665
No 32
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.19 E-value=2.3e-10 Score=108.96 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=74.2
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEec--CCeE--EEe
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSK--QGGL--RRW 75 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~--~~~~--~~~ 75 (319)
+|+|+|||+++|. ++++++||++|+|||||....++.++||||.++|... .+.++.++||+++.++ ++.+ .++
T Consensus 153 ~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~ 230 (445)
T PRK08525 153 KIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQL 230 (445)
T ss_pred hcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEe
Confidence 5899999999985 6899999999999999987434679999999998543 4568889999999886 2222 334
Q ss_pred eCCCCCC-------CCCCC---CCccHHHHHHHHHHHHHHHHh
Q 020993 76 YNPPCYS-------EQIPS---NPYDPLVLRKAFEKAVVKRLM 108 (319)
Q Consensus 76 ~~~~~~~-------~~~~~---~~~~~~~l~~~l~~av~~rl~ 108 (319)
+...... ...|+ ....+-+++..+-+.+.+.+.
T Consensus 231 ~~~~~~~c~fe~iY~~rpds~~~g~~v~~~R~~~G~~La~~~~ 273 (445)
T PRK08525 231 FEPTPRICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFP 273 (445)
T ss_pred cCCCCccceeEeeeecCCCceECCEEHHHHHHHHHHHHHHHhc
Confidence 4321100 01222 223455677777766666554
No 33
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=99.18 E-value=1.1e-10 Score=99.17 Aligned_cols=157 Identities=25% Similarity=0.330 Sum_probs=98.5
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhH-H-----H
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQE-G-----I 185 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~-~-----~ 185 (319)
+..|.||||+||+++++.+.+.+.. ....+|.+|.++..|.+.|+++|+.+|++|++++++.-. + .
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~~e--------v~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~saLt 75 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEGYE--------VHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSALT 75 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcCCE--------EEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCcCc
Confidence 4678999999999999999987642 133456677778789999999999999999988875321 1 0
Q ss_pred HH---HHHHHHhhc-cCCcCccC--chHHHHHHHHHHHhcCCeEEEeccCccccccCccccccCCChhHHHHHHHHHHHH
Q 020993 186 DA---LEEVIYHIE-TYDVTTIR--ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKA 259 (319)
Q Consensus 186 ~~---~~~~~~~~e-~~~~~~~~--~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~~~~~~~~~~~~~~~~ 259 (319)
+. +|+.-...+ .|. +.++ |.+.+.+.+-.|...|++.+++|-.+.+ |.|||..+. +| ++.++.
T Consensus 76 d~~~~vp~~~~~~~~~p~-t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D-~sgYPDcrp-----ef----i~a~~~ 144 (222)
T COG0603 76 DDSIDVPKYEFAEEEIPA-TFVPARNLIFLSIAAAYAEALGADAIIIGVNEED-FSGYPDCRP-----EF----IEALNE 144 (222)
T ss_pred CCCccccccccccccCcc-eEeccccHHHHHHHHHHHHHcCCCeEEEEecccc-cCCCCCCCH-----HH----HHHHHH
Confidence 10 111000001 011 1222 3333334445567789999999988877 577886532 23 333333
Q ss_pred hhhhhccccchhhhccCce-eccccCC---HHHHHHHhcC
Q 020993 260 LHLYDCLRANKSTSAWGVE-ARVPFLD---KEFINTAMSI 295 (319)
Q Consensus 260 l~~~~l~r~dr~~~~~gve-~r~Pfld---~~lve~~~~l 295 (319)
+. +++|..+++ +..|+.+ .+++..+..+
T Consensus 145 ~~--------~l~~~~~~~~i~aPl~~l~Ka~iv~l~~el 176 (222)
T COG0603 145 AL--------NLGTEKGVRIIHAPLMELTKAEIVKLADEL 176 (222)
T ss_pred HH--------HhhccCCccEEeCCeeeccHHHHHHHHHHh
Confidence 32 246667777 5899877 4555555543
No 34
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.18 E-value=1.9e-10 Score=104.62 Aligned_cols=83 Identities=28% Similarity=0.299 Sum_probs=66.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccC--CCCccHHHHHHHH
Q 020993 90 YDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGSPDLKAAREVA 167 (319)
Q Consensus 90 ~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~e~~~A~~va 167 (319)
+..+.+.+.|+++|++++.++ ++++.||||+||+++++++.+.... .++.++.+.. ....|.+.|+++|
T Consensus 14 ~~~e~i~~~l~~~V~~~~~~~-~VvVgLSGGIDSSvvaaLa~~a~g~--------~~v~av~~~~~~s~~~e~~~A~~lA 84 (326)
T PRK00876 14 AEAERIRAAIREQVRGTLRRR-GVVLGLSGGIDSSVTAALCVRALGK--------ERVYGLLMPERDSSPESLRLGREVA 84 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CEEEEccCCHHHHHHHHHHHHhhCC--------CcEEEEEecCCCCChHHHHHHHHHH
Confidence 456889999999999988776 8999999999999999999876421 1344444332 2346889999999
Q ss_pred HHhCCcceEEEeCh
Q 020993 168 DYLGTRHHEFHFTV 181 (319)
Q Consensus 168 ~~lg~~~~~~~~~~ 181 (319)
+++|++|+.+++++
T Consensus 85 ~~LGi~~~~i~i~~ 98 (326)
T PRK00876 85 EHLGVEYVVEDITP 98 (326)
T ss_pred HHcCCCEEEEECch
Confidence 99999999999875
No 35
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.17 E-value=7.7e-11 Score=101.10 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=75.8
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHH
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~ 190 (319)
+.+++|||+||++++.++.+... .++.++++... ...|.+.++++|+++|++|++++++... ...+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---------~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~-- 68 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---------DRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEF-- 68 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---------CcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHH--
Confidence 47899999999999999988652 25677776543 3458889999999999999999876311 1111
Q ss_pred HHHhhccCCcCccCch-HHHHHHHHHHHhcCCeEEEeccCccccccCcc
Q 020993 191 VIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (319)
Q Consensus 191 ~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~ 238 (319)
.. ..+. .+..+. ..+-.+.+.|.+.|+.++++|+.+|+.+.+++
T Consensus 69 --~~-~~~~-~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~ 113 (202)
T cd01990 69 --AK-NPPD-RCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRP 113 (202)
T ss_pred --hc-CCCC-ccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccCh
Confidence 11 1111 111111 22234567788899999999999999988654
No 36
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.17 E-value=8.9e-11 Score=104.01 Aligned_cols=135 Identities=21% Similarity=0.203 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC---CCccHHHHHHH
Q 020993 90 YDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE---GSPDLKAAREV 166 (319)
Q Consensus 90 ~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~---~~~e~~~A~~v 166 (319)
...+++.+.|+++|+.+.. ..+.+.||||+||+++++++.+... ..+.+..+... ...|.+.|+++
T Consensus 4 ~~~~~l~~~l~~~v~~~~~--~~V~vglSGGiDSsvla~l~~~~~~---------~~~~~~~~~~~~~~~~~e~~~a~~~ 72 (250)
T TIGR00552 4 KYVEEIEDFLRGYVQKSGA--KGVVLGLSGGIDSAVVAALCVEALG---------EQNHALLLPHSVQTPEQDVQDALAL 72 (250)
T ss_pred hHHHHHHHHHHHHHHHhCC--CCEEEECCCcHHHHHHHHHHHHhhC---------CceEEEEECCccCCCHHHHHHHHHH
Confidence 3467899999999998753 4577889999999999999987652 23444433221 23588999999
Q ss_pred HHHhCCcceEEEeChhHHHHHHHHHHHhh-ccCCc---CccCchHHHHHHHHHHHhcCCeEEEeccCccccccCcc
Q 020993 167 ADYLGTRHHEFHFTVQEGIDALEEVIYHI-ETYDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 238 (319)
Q Consensus 167 a~~lg~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~---~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~ 238 (319)
|+.+|++|+++++++.. ..+....... +.... ..+...+.+..+...|.+.|+.++.||+.. |.+.||.
T Consensus 73 a~~lgi~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~-E~~~G~~ 145 (250)
T TIGR00552 73 AEPLGINYKNIDIAPIA--ASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKS-ELMLGYF 145 (250)
T ss_pred HHHhCCeEEEEcchHHH--HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHH-HHhhCCe
Confidence 99999999998876532 1111100000 00000 011112345567778888999999999986 5667875
No 37
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=99.16 E-value=3e-10 Score=98.71 Aligned_cols=157 Identities=21% Similarity=0.252 Sum_probs=97.6
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCccHHHHHHHHHHhCCc-ceEEEeChhHHH-H-
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTR-HHEFHFTVQEGI-D- 186 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~va~~lg~~-~~~~~~~~~~~~-~- 186 (319)
++.|++|||+||+++++++.+.+ .++.++++ |.....|.+.|+++|+++|++ |++++++.-..+ .
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~----------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s 72 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY----------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVS 72 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC----------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 58899999999999999886643 24566555 444456899999999999996 998887631100 0
Q ss_pred HH-------HHHHHhhccCCcCccCchHHHHH-HH-HHHHhcCCeEEEeccCccccccCccccccCCChhHHHHHHHHHH
Q 020993 187 AL-------EEVIYHIETYDVTTIRASTPMFL-MS-RKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKI 257 (319)
Q Consensus 187 ~~-------~~~~~~~e~~~~~~~~~~~~~~~-l~-~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~~~~~~~~~~~~~~ 257 (319)
.+ ++.....+.+....+++-...++ ++ ..|.+.|++.++.|-.+|+. +||+..+ .+|.+. +
T Consensus 73 ~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~-~~YpDcr-----~~Fi~A----~ 142 (231)
T PRK11106 73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDF-SGYPDCR-----DEFVKA----L 142 (231)
T ss_pred ccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcC-CCCCCCC-----HHHHHH----H
Confidence 01 10000001111122333222232 33 35778999999999999885 7887532 234333 3
Q ss_pred HHhhhhhccccchhhhccCceeccccCC---HHHHHHHhcCC
Q 020993 258 KALHLYDCLRANKSTSAWGVEARVPFLD---KEFINTAMSID 296 (319)
Q Consensus 258 ~~l~~~~l~r~dr~~~~~gve~r~Pfld---~~lve~~~~lp 296 (319)
+.+.. .++..++.+..||++ .++++.+..+.
T Consensus 143 ~~~~~--------~~~~~~i~I~aPl~~lsK~eI~~l~~~lg 176 (231)
T PRK11106 143 NHAVS--------LGMAKDIRFETPLMWLNKAETWALADYYG 176 (231)
T ss_pred HHHHH--------hccCCCcEEEecCCCCCHHHHHHHHHHcC
Confidence 33322 233456899999998 67888877654
No 38
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.12 E-value=6.5e-10 Score=106.66 Aligned_cols=116 Identities=25% Similarity=0.321 Sum_probs=79.1
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEec---CCeEEEeecchhhhhc-cccceeeCCCcEEEecCCeEEEe-
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL---DGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLRRW- 75 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~---~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~~~~~~- 75 (319)
+|+|+|||++.+. ++++++|||+|+|||||.... ++.++||||.++|... .+.|+.++||+++.++.+.++.+
T Consensus 188 ~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~ 265 (500)
T PRK07349 188 RCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFH 265 (500)
T ss_pred HhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEe
Confidence 5899999999875 689999999999999998741 3479999999999654 46789999999998865433322
Q ss_pred eCCCCCCC---------CCCC---CCccHHHHHHHHHHHHHHHHh--hCCCeEEeec
Q 020993 76 YNPPCYSE---------QIPS---NPYDPLVLRKAFEKAVVKRLM--TDVPFGVLLS 118 (319)
Q Consensus 76 ~~~~~~~~---------~~~~---~~~~~~~l~~~l~~av~~rl~--~~~~v~v~LS 118 (319)
+.+..... ..|+ ....+.+.|..+-+.+.+... .|.=++|..|
T Consensus 266 ~~~~~~~~~C~fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~s 322 (500)
T PRK07349 266 WAQEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDS 322 (500)
T ss_pred cccCCCcceeEEEeeeccCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 21111100 1222 233466778777777665543 2333555555
No 39
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.11 E-value=1.5e-09 Score=103.70 Aligned_cols=122 Identities=25% Similarity=0.313 Sum_probs=83.6
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEecCCeEE--EeeC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGGLR--RWYN 77 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~~~~--~~~~ 77 (319)
+|+|+|||+++|. ++++++||++|+|||||... ++.++||||.++|... .+.++.|+||+++.++.+.++ ++..
T Consensus 163 ~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~ 239 (471)
T PRK06781 163 KVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTN 239 (471)
T ss_pred hCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCc
Confidence 5899999999985 78999999999999999986 6789999999999754 356888999999988654332 2322
Q ss_pred CCCCCC--------CCCC---CCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHH
Q 020993 78 PPCYSE--------QIPS---NPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAA 128 (319)
Q Consensus 78 ~~~~~~--------~~~~---~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa 128 (319)
+..... ..|+ ....+.+.|..+-+...+....+.. .+.|=-||+..+|
T Consensus 240 ~~~~~~C~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D---~vv~VP~s~~~~A 298 (471)
T PRK06781 240 EVDHAICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEAD---VVTGVPDSSISAA 298 (471)
T ss_pred CcccccceEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCCCCCc---EEEEcChhHHHHH
Confidence 111000 1222 1234667777777777665543322 3344556776654
No 40
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.11 E-value=1.7e-10 Score=99.87 Aligned_cols=62 Identities=31% Similarity=0.571 Sum_probs=56.1
Q ss_pred CcceeEEEEEEECCCC-EEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEE
Q 020993 1 MLDGMFSFVLLDTRDK-SFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYS 66 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~-~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~ 66 (319)
+|+|+|||++||..++ +++++|| .|||||... ++.++||||.++|...+..+..|..|.++.
T Consensus 152 ~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 152 RLEGAYALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred HhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 4899999999998764 9999999 599999985 678999999999999999999999998864
No 41
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.11 E-value=1.6e-10 Score=100.13 Aligned_cols=65 Identities=43% Similarity=0.682 Sum_probs=58.0
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhcc-ccceeeCCCcEE
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDC-ERFISFPPGHIY 65 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~-~~i~~l~pG~~l 65 (319)
+++|.|+|+++|..+++++++||++|.+||||....++.++||||..++.... +.+.++|||+++
T Consensus 155 ~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 155 RLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred hCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 47899999999998899999999999999999985267899999999998765 789999999863
No 42
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.10 E-value=2e-10 Score=101.49 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=56.1
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc----cccceeeCCCcEEE
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD----CERFISFPPGHIYS 66 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~----~~~i~~l~pG~~l~ 66 (319)
+|+|+|||+++|. +.++++|||+|.|||||... ++.++||||.++|... .+.+..++||+++.
T Consensus 182 ~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~ 248 (249)
T cd01907 182 DLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI 248 (249)
T ss_pred cCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence 5899999999986 56999999999999999985 6789999999999876 47889999999874
No 43
>PLN02440 amidophosphoribosyltransferase
Probab=99.10 E-value=2.5e-10 Score=109.69 Aligned_cols=68 Identities=32% Similarity=0.473 Sum_probs=59.1
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEecCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQG 70 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~ 70 (319)
+|+|+||+++||. ++++++|||+|+|||||.+..++.++||||.++|... .+.|+.|+||+.+.++.+
T Consensus 153 ~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~ 221 (479)
T PLN02440 153 KLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKD 221 (479)
T ss_pred HhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECC
Confidence 4799999999996 5699999999999999986445679999999999875 577899999999988643
No 44
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=99.09 E-value=6.4e-10 Score=102.89 Aligned_cols=112 Identities=21% Similarity=0.175 Sum_probs=77.4
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCC------------CccHHHHHHHHHHhCCcceEEEe
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG------------SPDLKAAREVADYLGTRHHEFHF 179 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~------------~~e~~~A~~va~~lg~~~~~~~~ 179 (319)
+|++++|||+||+++++++.+.+ ..+.++++.... ..|.+.|+++|+++|++|+.+++
T Consensus 2 kVlValSGGvDSsvla~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQG----------YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 58999999999999999998753 357777765421 24678999999999999999988
Q ss_pred ChhHHHHHHHHHHH---hhccCCcCccCchH-H-HHHHHHHHHhcCCeEEEeccCccccc
Q 020993 180 TVQEGIDALEEVIY---HIETYDVTTIRAST-P-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (319)
Q Consensus 180 ~~~~~~~~~~~~~~---~~e~~~~~~~~~~~-~-~~~l~~~a~~~g~~v~ltG~G~Delf 234 (319)
..+...+.+...+. .-.+|++ +..+.. . +..+.+.|.+.|++.+.||+.+|...
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tpnp-c~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTPNP-CVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCc-ChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 65322222222221 2234543 333322 2 23566778889999999999998653
No 45
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=99.08 E-value=4.7e-10 Score=93.98 Aligned_cols=85 Identities=38% Similarity=0.779 Sum_probs=71.5
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccc-cceeeCCCcEEEecCCeEEEeeCCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCE-RFISFPPGHIYSSKQGGLRRWYNPP 79 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~-~i~~l~pG~~l~~~~~~~~~~~~~~ 79 (319)
.|+|.|||++||..++++++|||+-|..||||....+|.++||+++..|...|. .....|+|+.+... +.++.|-+|.
T Consensus 128 ~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~ 206 (228)
T PF12481_consen 128 DLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPK 206 (228)
T ss_pred hccCceEEEEEecCCCcEEEeecCCCCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCc
Confidence 489999999999999999999999999999999988899999999998887775 55689999988765 5577777776
Q ss_pred CCCCCCC
Q 020993 80 CYSEQIP 86 (319)
Q Consensus 80 ~~~~~~~ 86 (319)
......|
T Consensus 207 nk~k~~p 213 (228)
T PF12481_consen 207 NKVKAMP 213 (228)
T ss_pred ccccccc
Confidence 5443333
No 46
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.07 E-value=1.1e-09 Score=101.60 Aligned_cols=112 Identities=25% Similarity=0.205 Sum_probs=75.4
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC----------CCccHHHHHHHHHHhCCcceEEEeCh
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE----------GSPDLKAAREVADYLGTRHHEFHFTV 181 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~----------~~~e~~~A~~va~~lg~~~~~~~~~~ 181 (319)
++++++|||+||+++++++.+.+ .++.++++... ...|.+.|+++|+.+|++|+.++++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~g----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 47899999999999999998754 35555554221 12578899999999999999999876
Q ss_pred hHHHHHHHHHHH---hhccCCcCccCchH-H-HHHHHHHHHhcCCeEEEeccCccccc
Q 020993 182 QEGIDALEEVIY---HIETYDVTTIRAST-P-MFLMSRKIKSLGVKMVISGEGSDEIF 234 (319)
Q Consensus 182 ~~~~~~~~~~~~---~~e~~~~~~~~~~~-~-~~~l~~~a~~~g~~v~ltG~G~Delf 234 (319)
+...+.+...+. ...+|++ +..+.. . +..+.+.|.+.|+..+.||+.+|...
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpnp-c~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPNP-DILCNKEIKFGALLDYAKKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCCc-hHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee
Confidence 432222222222 1234543 222222 2 23455778889999999999998754
No 47
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=99.07 E-value=1.6e-10 Score=106.25 Aligned_cols=113 Identities=20% Similarity=0.175 Sum_probs=67.2
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCC-----------ccHHHHHHHHHHhCCcceEEEeC
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-----------PDLKAAREVADYLGTRHHEFHFT 180 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-----------~e~~~A~~va~~lg~~~~~~~~~ 180 (319)
+|.|++|||+|||+.|+++++++. +++.+++..-+. .|...|+++|++||++|+.+++.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~----------~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGY----------DVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-----------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhhcc----------cceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 588999999999999999998764 566666543222 25788999999999999999987
Q ss_pred hh---HHHHHHHHHHHhhccCCcCccCchHH--HHHHHHHHHh-cCCeEEEeccCcccccc
Q 020993 181 VQ---EGIDALEEVIYHIETYDVTTIRASTP--MFLMSRKIKS-LGVKMVISGEGSDEIFG 235 (319)
Q Consensus 181 ~~---~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~l~~~a~~-~g~~v~ltG~G~Delf~ 235 (319)
.+ ++++.+-+....-.+|++ ++.++-. +-.|.+.|.+ .|+..+.||+.|--...
T Consensus 72 ~~f~~~Vi~~f~~~Y~~G~TPNP-cv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~ 131 (356)
T PF03054_consen 72 EEFWEEVIEPFLDEYRKGRTPNP-CVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD 131 (356)
T ss_dssp HHHHHHTHHHHHHHHHTT----H-HHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCh-HHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee
Confidence 53 223333333333456765 3332211 1246677888 89999999999975544
No 48
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.06 E-value=5.5e-10 Score=106.44 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=79.4
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhh-ccccceeeCCCcEEEecCCeEEEe-eCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSD-DCERFISFPPGHIYSSKQGGLRRW-YNP 78 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~-~~~~i~~l~pG~~l~~~~~~~~~~-~~~ 78 (319)
+|+|+|+|+++|. ++++++|||+|++||||.+. ++.++||||..+|.. ..+.++.|+||+.+.++.+.++.+ +.+
T Consensus 154 ~l~G~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~ 230 (442)
T TIGR01134 154 RVRGAYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFAN 230 (442)
T ss_pred HhCccceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccC
Confidence 5799999999975 78999999999999999985 678999999999875 357899999999998876544321 111
Q ss_pred CCCCC--------CCCC---CCccHHHHHHHHHHHHHHHHhh--CCCeEEeecC
Q 020993 79 PCYSE--------QIPS---NPYDPLVLRKAFEKAVVKRLMT--DVPFGVLLSG 119 (319)
Q Consensus 79 ~~~~~--------~~~~---~~~~~~~l~~~l~~av~~rl~~--~~~v~v~LSG 119 (319)
..... ..|+ ....+-+.|..+-+.+.+.... |.=++|..||
T Consensus 231 ~~~~~c~fe~vYfarpds~~~g~~v~~~R~~~g~~La~~~~~~~D~Vv~VP~sg 284 (442)
T TIGR01134 231 TPRAPCIFEYVYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDSG 284 (442)
T ss_pred CCCcceEEEEEEecCCcceECCeEHHHHHHHHHHHHHHhcCCCCEEEEEccCCH
Confidence 10000 1121 1233556676666666665432 2235556663
No 49
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.1e-09 Score=99.58 Aligned_cols=110 Identities=25% Similarity=0.202 Sum_probs=76.6
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCC----C---CccHHHHHHHHHHhCCcceEEEeC
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLE----G---SPDLKAAREVADYLGTRHHEFHFT 180 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~----~---~~e~~~A~~va~~lg~~~~~~~~~ 180 (319)
..+|.+++|||+|||+.|+++++++. ++..+++ .+. . ..|...|+++|+++|++|+.+++.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QGy----------eViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~ 72 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQGY----------EVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFE 72 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcCC----------eEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchH
Confidence 35689999999999999999999875 4555443 221 1 147788999999999999999987
Q ss_pred hhHHHH----HHHHHHHhhccCCcCccCc-hHHHH-HHHHHHHhcCCeEEEeccCcc
Q 020993 181 VQEGID----ALEEVIYHIETYDVTTIRA-STPMF-LMSRKIKSLGVKMVISGEGSD 231 (319)
Q Consensus 181 ~~~~~~----~~~~~~~~~e~~~~~~~~~-~~~~~-~l~~~a~~~g~~v~ltG~G~D 231 (319)
. ++.+ .+.+.-..-.+|++ ++.+ ....| .+.+.|.+.|++.+.||+.+=
T Consensus 73 ~-~y~~~V~~~f~~~Y~~G~TPNP-ci~CN~~iKF~~~l~~a~~lgad~iATGHYar 127 (356)
T COG0482 73 K-EFWNKVFEYFLAEYKAGKTPNP-CILCNKEIKFKALLDYAKELGADYIATGHYAR 127 (356)
T ss_pred H-HHHHHHHHHHHHHHhCCCCCCc-chhcCHHHHHHHHHHHHHHcCCCeEEEeeeEe
Confidence 5 3333 22222223356775 4444 22233 355677889999999999764
No 50
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=99.04 E-value=3.2e-09 Score=91.00 Aligned_cols=155 Identities=24% Similarity=0.340 Sum_probs=95.4
Q ss_pred EEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHHHHHHhCCcceEEEeChhHHHH--HHH
Q 020993 114 GVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTVQEGID--ALE 189 (319)
Q Consensus 114 ~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~--~~~ 189 (319)
.+++|||+||++++.++.+.+ .++.++++.+. ...|.+.++++|+.+|++|++++++.-..+. .+.
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~ 71 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEG----------YEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALT 71 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcC----------CcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhccccccccc
Confidence 689999999999999987753 46778877654 3357889999999999999998876311100 000
Q ss_pred H---HHHh-hccC---CcCccC--chHHHHHHHHHHHhcCCeEEEeccCccccccCccccccCCChhHHHHHHHHHHHHh
Q 020993 190 E---VIYH-IETY---DVTTIR--ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKAL 260 (319)
Q Consensus 190 ~---~~~~-~e~~---~~~~~~--~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~~~~~~~~~~~~~~~~l 260 (319)
. .... .... ....++ +.+.+-.+.+.|.+.|+..+++|...|++ +.|+..+ ..|.+ .++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~-~~~~d~~-----~~f~~----~~~~~ 141 (201)
T TIGR00364 72 DESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDF-SGYPDCR-----DEFVK----AFNHA 141 (201)
T ss_pred CCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcC-CCCCCCc-----HHHHH----HHHHH
Confidence 0 0000 0000 000011 11212235577888999999999999985 6665321 22322 23332
Q ss_pred hhhhccccchhhhccCceeccccCC---HHHHHHHhcCC
Q 020993 261 HLYDCLRANKSTSAWGVEARVPFLD---KEFINTAMSID 296 (319)
Q Consensus 261 ~~~~l~r~dr~~~~~gve~r~Pfld---~~lve~~~~lp 296 (319)
.. .....++.+..||++ .++++.+..+.
T Consensus 142 ~~--------~~~~~~~~i~~Pl~~~~K~eI~~la~~~g 172 (201)
T TIGR00364 142 LN--------LGMLTPVKIRAPLMDLTKAEIVQLADELG 172 (201)
T ss_pred HH--------hhcCCCeEEEECCcCCCHHHHHHHHHHcC
Confidence 21 123466889999987 67888887655
No 51
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.04 E-value=1.6e-09 Score=91.43 Aligned_cols=116 Identities=22% Similarity=0.236 Sum_probs=74.7
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeecc--CCC--CccHHHHHHHHHHhCCcceEEEeChhHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEG--SPDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~--~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~ 187 (319)
+++|++|||.||++++.++.+...... .+.++.++++. ... ..+.++++++|+.+|++++.+.++. ++ ..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKE-EY-TD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhh-hc-ch
Confidence 478999999999999999988653210 01256666664 332 2567899999999999999988763 22 00
Q ss_pred HHHHHHhhccCCcCccCc-hHHHHHHHHHHHhcCCeEEEeccCcccccc
Q 020993 188 LEEVIYHIETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (319)
Q Consensus 188 ~~~~~~~~e~~~~~~~~~-~~~~~~l~~~a~~~g~~v~ltG~G~Delf~ 235 (319)
.... ........+..+ ......+.+.|++.|+.++++|+.+|++..
T Consensus 75 ~~~~--~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~e 121 (185)
T cd01993 75 DIEV--KKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAE 121 (185)
T ss_pred hhhh--hccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHH
Confidence 0100 001111111111 233456777888899999999999998743
No 52
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=99.04 E-value=9.1e-10 Score=101.93 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=75.1
Q ss_pred hhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCC----CccHHHHHHHHHHhCCcceEEEeChhH
Q 020993 108 MTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG----SPDLKAAREVADYLGTRHHEFHFTVQE 183 (319)
Q Consensus 108 ~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~----~~e~~~A~~va~~lg~~~~~~~~~~~~ 183 (319)
.++.++.|++|||+||++++.++++.+ .++.++++...+ ..+.+.|+++|+++|++|+.++++. +
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G----------~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~-~ 71 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAG----------YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARK-V 71 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcC----------CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHH-H
Confidence 355689999999999999999998764 367777764321 2357889999999999999988653 2
Q ss_pred HHHHH----HHHHHhhccCCcCccCchH-HH-HHHHHHHHhcCCeEEEeccCcc
Q 020993 184 GIDAL----EEVIYHIETYDVTTIRAST-PM-FLMSRKIKSLGVKMVISGEGSD 231 (319)
Q Consensus 184 ~~~~~----~~~~~~~e~~~~~~~~~~~-~~-~~l~~~a~~~g~~v~ltG~G~D 231 (319)
+.+.+ .+......+|++ ++.+.. .. -.+.+.|.+.|++.++||+.+.
T Consensus 72 f~~~v~~~f~~~y~~g~tpnp-C~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 72 FRKQIIDYFIDEYMSGHTPVP-CTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHhhhhhHHhccCCCCH-HHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 22222 111111233432 222222 22 2456778889999999999985
No 53
>PTZ00323 NAD+ synthase; Provisional
Probab=99.02 E-value=6.6e-09 Score=93.42 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHhh--CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC-CCccHHHHHHHHHHh
Q 020993 94 VLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPDLKAAREVADYL 170 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~e~~~A~~va~~l 170 (319)
++.+...+.++.+++. ...+.+.||||+||+++++++.+....... ....++++..... ...+.+.|+++|+.+
T Consensus 28 ~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~---~~~~~~~v~~P~~ss~~~~~~A~~la~~l 104 (294)
T PTZ00323 28 AWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNS---PIQKNVGLCQPIHSSAWALNRGRENIQAC 104 (294)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccC---CceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334444555555544 568999999999999999999987643100 0012334443322 235788999999999
Q ss_pred CCcceEEEeChhHHHHHHHHHHHhhccCCc---------CccCchHHHHHHHHHHHhcCCeEEEecc-Ccccc-ccCccc
Q 020993 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDV---------TTIRASTPMFLMSRKIKSLGVKMVISGE-GSDEI-FGGYLY 239 (319)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---------~~~~~~~~~~~l~~~a~~~g~~v~ltG~-G~Del-f~Gy~~ 239 (319)
|++|+++++++ +.+.+...+........ +.++ +...|.+++.+.+.|...++.|- ..||. .-||..
T Consensus 105 Gi~~~~idi~~--l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R-~~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~Gy~t 181 (294)
T PTZ00323 105 GATEVTVDQTE--IHTQLSSLVEKAVGIKGGAFARGQLRSYMR-TPVAFYVAQLLSQEGTPAVVMGTGNFDEDGYLGYFC 181 (294)
T ss_pred CCcEEEEECcH--HHHHHHHHHhhhhcccchhhHHHhHHHHHH-hHHHHHHHHHHhhcCCCeEEECCCCchhhhHhchHh
Confidence 99999999875 33333222221100000 0011 12347777777677888888887 68885 358864
No 54
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.01 E-value=9.5e-10 Score=105.41 Aligned_cols=68 Identities=28% Similarity=0.449 Sum_probs=59.2
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEecCCe
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSSKQGG 71 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~~ 71 (319)
+|+|+|++++++. ++++++||++|+|||||.+. ++.++||||.++|... .+.++.|+||+++.++...
T Consensus 168 ~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g 236 (469)
T PRK05793 168 AIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDG 236 (469)
T ss_pred HhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCc
Confidence 4789999999986 78999999999999999986 6789999999999764 3678899999999886543
No 55
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.00 E-value=8.1e-10 Score=106.80 Aligned_cols=68 Identities=25% Similarity=0.311 Sum_probs=57.2
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEec---CCeEEEeecchhhhhc-cccceeeCCCcEEEecC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL---DGSIWFASEMKALSDD-CERFISFPPGHIYSSKQ 69 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~---~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~ 69 (319)
+|+|+||++++.. .++++++|||+|+|||||.+.+ ++.++||||.++|... .+-|+.|+||+.+.++.
T Consensus 162 ~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~ 233 (501)
T PRK09246 162 RVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITE 233 (501)
T ss_pred hcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEEC
Confidence 4789999998843 4579999999999999999752 3479999999999875 46689999999998864
No 56
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=98.99 E-value=1.3e-09 Score=108.59 Aligned_cols=68 Identities=29% Similarity=0.576 Sum_probs=60.5
Q ss_pred CcceeEEEEEEECCC-CEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCeE
Q 020993 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGL 72 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~-~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~~ 72 (319)
+|+|+|||++||..+ ++++++||+ |||||.+. ++.++||||+++|......++.|+||+++.++...+
T Consensus 153 ~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~ 221 (604)
T PRK00331 153 RLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRRVIYLEDGEIAVLTRDGV 221 (604)
T ss_pred hccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeE
Confidence 589999999999886 899999996 99999985 678999999999999989999999999998864433
No 57
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.98 E-value=2.1e-09 Score=94.51 Aligned_cols=134 Identities=22% Similarity=0.251 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHHHHHHh
Q 020993 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYL 170 (319)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~va~~l 170 (319)
+.+.+.|++-+++. ....+.+.||||+||+++++++.+...+ .++.++.+... ...+.+.|+++|+.+
T Consensus 3 ~~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~Alg~--------~~v~~v~mp~~~~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKALGP--------DNVLAVIMPSGFSSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHHHGG--------GEEEEEEEESSTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHHhhh--------ccccccccccccCChHHHHHHHHHHHHh
Confidence 44555566655543 3467889999999999999999998743 36778877532 234778899999999
Q ss_pred CCcceEEEeChhHHHHHHHHHHHhhc-cCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCccc
Q 020993 171 GTRHHEFHFTVQEGIDALEEVIYHIE-TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (319)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~ 239 (319)
|+++.++++++ ..+.+...+.... ......+...+-+-.++..|...+. ++++....+|...||..
T Consensus 73 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~-lVlgT~N~sE~~~Gy~T 139 (242)
T PF02540_consen 73 GIEYIVIDIDP--IFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNY-LVLGTGNKSELLLGYFT 139 (242)
T ss_dssp TSEEEEEESHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTE-EEBE--CHHHHHHTCSH
T ss_pred CCCeeccchHH--HHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccce-EEecCCcHHHhhcCccc
Confidence 99999998864 3333332221111 0000011111222233333444553 44444447888889864
No 58
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.96 E-value=4.2e-09 Score=97.92 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=75.0
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHHHHHHhCC-cceEEEeChhHHHH
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGT-RHHEFHFTVQEGID 186 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~va~~lg~-~~~~~~~~~~~~~~ 186 (319)
..++.+++|||+|||++++++.+.+ ..+.++++... ...|.+.|+++|+.+|+ +|+++++..+...+
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~G----------~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~ 71 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQERG----------YAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEG 71 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHcC----------CcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHH
Confidence 3578999999999999999988753 46788876543 35789999999999998 59998887543222
Q ss_pred HHHHHH-----HhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccC
Q 020993 187 ALEEVI-----YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (319)
Q Consensus 187 ~~~~~~-----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G 229 (319)
.+...+ +.-.+|..++-+ ....-.+.+.|++.|+.++.+|.-
T Consensus 72 vi~p~i~aNa~y~G~yPl~~~nR-~~~~~~l~e~A~~~G~~~IA~G~t 118 (400)
T PRK04527 72 FVKPLVWAGEGYQGQYPLLVSDR-YLIVDAALKRAEELGTRIIAHGCT 118 (400)
T ss_pred HHHHHHhcchhhcCCCCCccccH-HHHHHHHHHHHHHCCCCEEEecCc
Confidence 333222 222345433211 111224567788899999999994
No 59
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.95 E-value=8.1e-09 Score=95.48 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=76.3
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChh---HHHH
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQ---EGID 186 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~---~~~~ 186 (319)
..++.|++|||+||+++++++++.+ ..+.++++... ..|...|+++|+++|++|+.++++.. ++++
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~eV~av~~~~~-~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~ 73 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQG----------YEIVGVTMRVW-GDEPQDARELAARMGIEHYVADERVPFKDTIVK 73 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHcC----------CcEEEEEecCc-chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHH
Confidence 4579999999999999999988753 46777777543 24567799999999999999988742 1222
Q ss_pred HHHHHHHhhccCCcCccCch-HH-HHHHHHHHHhcCCeEEEeccCccc
Q 020993 187 ALEEVIYHIETYDVTTIRAS-TP-MFLMSRKIKSLGVKMVISGEGSDE 232 (319)
Q Consensus 187 ~~~~~~~~~e~~~~~~~~~~-~~-~~~l~~~a~~~g~~v~ltG~G~De 232 (319)
.+-+....-.+|++ +..+. .. .-.+.+.|.+.|+..+.||+.++-
T Consensus 74 ~~~~~~~~G~tpnp-C~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 74 NFIDEYRQGRTPNP-CVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred HhHHHHHcCCCCCC-chhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 22122222234553 33333 22 234677888999999999999963
No 60
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.94 E-value=6.4e-09 Score=96.31 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=72.4
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccC-------C-----CCccHHHHHHHHHHhCCcceEEEe
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL-------E-----GSPDLKAAREVADYLGTRHHEFHF 179 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~-------~-----~~~e~~~A~~va~~lg~~~~~~~~ 179 (319)
++.+++|||+||+++++++.+.+ .++.++++.. . ...|.+.|+++|+.+|++|+.+++
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 57899999999999999998864 3567776621 0 113678899999999999999887
Q ss_pred ChhH---HHHHHHHHHHhhccCCcCccCchHH--HHHHHHHHHhc-CCeEEEeccCc
Q 020993 180 TVQE---GIDALEEVIYHIETYDVTTIRASTP--MFLMSRKIKSL-GVKMVISGEGS 230 (319)
Q Consensus 180 ~~~~---~~~~~~~~~~~~e~~~~~~~~~~~~--~~~l~~~a~~~-g~~v~ltG~G~ 230 (319)
..+- +.+.+.+....-.+|++ ++.+... +..+.+.|.+. |+..+.||+.+
T Consensus 72 ~~~f~~~v~~~~~~~y~~g~tpnp-C~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 72 QKEYWNKVFEPFIQEYKEGRTPNP-DILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCc-chhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 6431 12222222112234543 3333222 23456777776 99999999999
No 61
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.92 E-value=1.6e-08 Score=89.46 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhh--CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCC--cceeeccCCCCccHHHHHHHHHHh
Q 020993 95 LRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQ--LHSFCIGLEGSPDLKAAREVADYL 170 (319)
Q Consensus 95 l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~e~~~A~~va~~l 170 (319)
..+.+.+.++..+.. ...+.+.||||+||++++++|.+........ ..+.. +.++...+....+.+.|+++|+.+
T Consensus 21 ~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~-~~~~~~~~~~l~mP~~~~~~~~da~~la~~l 99 (268)
T PRK00768 21 EIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAE-TGDDDYQFIAVRLPYGVQADEDDAQDALAFI 99 (268)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhccc-ccCcceeEEEEECCCCCcCCHHHHHHHHHhc
Confidence 334444555555432 3568899999999999999999886432100 00011 334444433345678899999999
Q ss_pred CC-cceEEEeChhHHHHHHHHHHHhhcc-C-Cc--CccCchHHHHHHHHHHHhcCCeEEEeccCccccccCccc
Q 020993 171 GT-RHHEFHFTVQEGIDALEEVIYHIET-Y-DV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (319)
Q Consensus 171 g~-~~~~~~~~~~~~~~~~~~~~~~~e~-~-~~--~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~ 239 (319)
|+ +|.++++++ ..+.+.+.+...+. . +. ..+.+..-+-.++..|...|.-|+=||. -+|+.-||..
T Consensus 100 gi~~~~~i~I~~--~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N-~sE~~~Gy~T 170 (268)
T PRK00768 100 QPDRVLTVNIKP--AVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDH-AAEAVTGFFT 170 (268)
T ss_pred CCCeeEEEECHH--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCc-ccHHHhCcee
Confidence 99 788988764 34444333321000 0 00 0111122233344445556665555554 7788899974
No 62
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.91 E-value=1e-08 Score=93.33 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=73.6
Q ss_pred HHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeecc--CCCCccHHHHHHHH-HHhCCcceEEE
Q 020993 102 AVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVA-DYLGTRHHEFH 178 (319)
Q Consensus 102 av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~va-~~lg~~~~~~~ 178 (319)
.+++.+. +.++.+++|||+||+++++++.+... .++.++++. +....|.+.+++.+ +++|++|+.++
T Consensus 9 ~l~~~v~-~~kVvValSGGVDSsvla~ll~~~~G---------~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd 78 (311)
T TIGR00884 9 EIREQVG-DAKVIIALSGGVDSSVAAVLAHRAIG---------DRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVD 78 (311)
T ss_pred HHHHHhC-CCcEEEEecCChHHHHHHHHHHHHhC---------CCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEe
Confidence 3344443 36799999999999999999987652 467777764 43345777776664 58999999988
Q ss_pred eChhHHHHHHHHHHHhhccCCcCc-cCchHHHHHHHHHHHhcC-CeEEEeccCcccc
Q 020993 179 FTVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 233 (319)
Q Consensus 179 ~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~g-~~v~ltG~G~Del 233 (319)
.+. .+.+.+.. ...|.... +........+.+.|++.| ++.+++|...|.+
T Consensus 79 ~~e-~fl~~l~~----v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 79 AKE-RFLSALKG----VTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred CcH-HHHhhhcC----CCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 763 22332221 11111000 000111223556677888 9999999998754
No 63
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=98.91 E-value=3.1e-09 Score=105.92 Aligned_cols=67 Identities=31% Similarity=0.555 Sum_probs=59.1
Q ss_pred CcceeEEEEEEECCC-CEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCe
Q 020993 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGG 71 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~-~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~ 71 (319)
+|+|+|||++||... ++++++||+ |||||.+. ++.++||||+++|......+..|+||+++.++.+.
T Consensus 152 ~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~ 219 (607)
T TIGR01135 152 QLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRRVIYLEDGDIAILTRDG 219 (607)
T ss_pred HhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCe
Confidence 589999999999875 569999995 99999985 67899999999999988899999999999876443
No 64
>PRK00919 GMP synthase subunit B; Validated
Probab=98.89 E-value=1.4e-08 Score=91.90 Aligned_cols=123 Identities=18% Similarity=0.216 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeecc--CCCCccHHHHHHHHHHhCC
Q 020993 95 LRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYLGT 172 (319)
Q Consensus 95 l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~va~~lg~ 172 (319)
+.+...+.++.++.. .++.+++|||+||+++++++.+.. |.+++++++. .....|.+.++++++.+ +
T Consensus 7 ~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~l---------G~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i 75 (307)
T PRK00919 7 FIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAI---------GDRLTPVFVDTGLMRKGETERIKETFSDM-L 75 (307)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHh---------CCeEEEEEEECCCCCHHHHHHHHHHHhcc-C
Confidence 333334455566654 789999999999999999998854 2467777764 33346889999999988 8
Q ss_pred cceEEEeChhHHHHHHHHHHHhhccCCcCc-cCchHHHHHHHHHHHhcCCeEEEeccCcccc
Q 020993 173 RHHEFHFTVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
+|+.++.+. .+.+.+.. ...|.... +........+.+.|++.|++.+++|...|.+
T Consensus 76 ~~~vvd~~e-~fl~~L~~----v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~ 132 (307)
T PRK00919 76 NLRIVDAKD-RFLDALKG----VTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDW 132 (307)
T ss_pred CcEEEECCH-HHHHhccC----CCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 898887653 23333221 11111100 0001112345567888899999999988765
No 65
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.89 E-value=1.1e-08 Score=95.53 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=73.8
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCc-ceEEEeChhHHHH-HH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTR-HHEFHFTVQEGID-AL 188 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~-~~~~~~~~~~~~~-~~ 188 (319)
.++++++|||+||++++.++.+.. |.+++++++......|.+.|+++|+.+|+. |.++++.. ++.+ .+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l---------G~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~~-ef~~~~i 72 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY---------GCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLRE-EFVRDYV 72 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh---------CCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCHH-HHHHHhH
Confidence 368999999999999999998753 246888888665557899999999999985 55556542 3332 12
Q ss_pred HHHH-----HhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCc
Q 020993 189 EEVI-----YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (319)
Q Consensus 189 ~~~~-----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~ 230 (319)
...+ +....|.++.+......-.+.+.|++.|++++.+|..+
T Consensus 73 ~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 73 FPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 2222 22344543222111122235567888999999999876
No 66
>PRK13981 NAD synthetase; Provisional
Probab=98.88 E-value=2e-08 Score=98.78 Aligned_cols=138 Identities=21% Similarity=0.247 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHhh--CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCC--ccHHHHHHHH
Q 020993 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVA 167 (319)
Q Consensus 92 ~~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~e~~~A~~va 167 (319)
.+++.+.+...++..+.. ...+.+.||||+||+++++++.+.... .+++++++....+ .+.+.|+++|
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--------~~v~~~~~p~~~~~~~~~~~a~~~a 331 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--------ERVRAVMMPSRYTSEESLDDAAALA 331 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--------CcEEEEECCCCCCCHHHHHHHHHHH
Confidence 456667777777776654 367899999999999999999887632 3688888765433 4678899999
Q ss_pred HHhCCcceEEEeChhHHHHHHHHHHHhh---ccCCcC--ccCchHHHHHHHHHHHhcCCeEEEeccCccccccCcccc
Q 020993 168 DYLGTRHHEFHFTVQEGIDALEEVIYHI---ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (319)
Q Consensus 168 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~---e~~~~~--~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~ 240 (319)
+.+|++|+++++++ ..+.+.+.+... +.++.. .+.+.+-+-.++..|.+.|.-|+=||+ -+|+.-||...
T Consensus 332 ~~lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n-~sE~~~Gy~t~ 406 (540)
T PRK13981 332 KNLGVRYDIIPIEP--AFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGN-KSEMAVGYATL 406 (540)
T ss_pred HHcCCeEEEEECHH--HHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCc-cCHHHcCCeEe
Confidence 99999999998875 333333322211 111110 111122233445556667766666665 67888898743
No 67
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.86 E-value=1.7e-08 Score=84.71 Aligned_cols=108 Identities=16% Similarity=0.111 Sum_probs=64.3
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeecc--CCCCc----cHHHHHHHHHHhCCcceEEEeChhHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSP----DLKAAREVADYLGTRHHEFHFTVQEGI 185 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~----e~~~A~~va~~lg~~~~~~~~~~~~~~ 185 (319)
++.+++|||+||++++.++.+.+ .++.++++. +.... +...+.+.+..++.+|....++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g----------~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRG----------IEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcC----------CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH-
Confidence 47899999999999999998753 356666654 43332 23444455567787776544443221
Q ss_pred HHHHHHHHhhccCCcCccCchHHH-HHHHHHHHhcCCeEEEeccCccc
Q 020993 186 DALEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDE 232 (319)
Q Consensus 186 ~~~~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~v~ltG~G~De 232 (319)
...+......+++ ++..+...+ ..+.+.|.+.|++++++|+.+|+
T Consensus 70 -~~~~~~~~~~~~~-~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 70 -VQKEIYGYGKEKY-RCILCKRMMYRIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred -HHHHHHHhCCCcc-HhHHHHHHHHHHHHHHHHHcCCCEEEEccCccc
Confidence 1112222222222 233322222 34556778899999999998776
No 68
>PRK08349 hypothetical protein; Validated
Probab=98.79 E-value=4.4e-08 Score=83.72 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=65.5
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhC----Ccce-EEEeChhHH-H
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG----TRHH-EFHFTVQEG-I 185 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg----~~~~-~~~~~~~~~-~ 185 (319)
++.+++|||+||++.+.++.+.+ .++.++++.. +..+.+.++++|++++ ++|. .+.++..+. .
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g----------~~v~av~~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRG----------VEVYPVHFRQ-DEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcC----------CeEEEEEEeC-CHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 46799999999999999887653 4677777765 3356666777777664 7774 233332221 1
Q ss_pred HHHHHHHHhhccCCcCccCchHH-HHHHHHHHHhcCCeEEEeccCcccc
Q 020993 186 DALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 186 ~~~~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
..+..+......+ .+++.+... ...+.+.|.+.|+..++||+..|+.
T Consensus 71 ~~~~~~~~~~~~~-~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~ 118 (198)
T PRK08349 71 PVFEKLRELKKEK-WTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQV 118 (198)
T ss_pred HHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchH
Confidence 1222211111112 122222222 2345667888999999999866553
No 69
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.78 E-value=1.5e-08 Score=101.49 Aligned_cols=72 Identities=31% Similarity=0.538 Sum_probs=62.2
Q ss_pred CcceeEEEEEEECC-CCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCeEEEee
Q 020993 1 MLDGMFSFVLLDTR-DKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLRRWY 76 (319)
Q Consensus 1 ~l~G~fa~~i~D~~-~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~~~~~~ 76 (319)
+|+|+|||++||.. .++++++||+ |||||... ++.++||||.++|......+..|+||+++.++.+.++.|.
T Consensus 183 ~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 183 RLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred HhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEEeCCCeEEEEECCeEEEEe
Confidence 48999999999976 5899999997 99999985 6679999999999988888889999999988766555443
No 70
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=98.78 E-value=7e-08 Score=85.93 Aligned_cols=131 Identities=21% Similarity=0.161 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHH-H-hhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccC--CCCccHHHHHHHHH
Q 020993 93 LVLRKAFEKAVVKR-L-MTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGSPDLKAAREVAD 168 (319)
Q Consensus 93 ~~l~~~l~~av~~r-l-~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~e~~~A~~va~ 168 (319)
+.+.+.+.+++++. + ....++.|++|||.||++++.++.+...... .+.++.++++.. .+ .+.+.++++|+
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----~~~~l~av~vd~g~~~-~~~~~~~~~~~ 84 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----INFELVAVNLDQKQPG-FPEHVLPEYLE 84 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----CCeEEEEEEecCCCCC-CCHHHHHHHHH
Confidence 45667777777763 2 3456799999999999999999977542210 012456666533 33 24457899999
Q ss_pred HhCCcceEEEeChhHHHHHHHHHHHhhccCCcCccCch-HHHHHHHHHHHhcCCeEEEeccCccccc
Q 020993 169 YLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (319)
Q Consensus 169 ~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~v~ltG~G~Delf 234 (319)
.+|++++++.++...+. ..... .... .+..+. .-...+.+.|.+.|+.++++|+-+|+..
T Consensus 85 ~lgI~~~v~~~~~~~~~---~~~~~--~~~~-~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 85 SLGVPYHIEEQDTYSIV---KEKIP--EGKT-TCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred HhCCCEEEEEecchhhh---hhhhc--cCCC-hhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 99999998876532211 11110 1000 010011 2234566778889999999999999753
No 71
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.76 E-value=8.4e-08 Score=81.29 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=70.3
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeecc--CCC--CccHHHHHHHHHHhCCcceEEEeChhHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEG--SPDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~--~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~ 187 (319)
++.+++|||.||++++.++.+..... +.++.++++. +.. ..+.+.++++|+.+|++++.+.++..+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccc
Confidence 47899999999999999998764321 2356666654 332 2367889999999999999988764321110
Q ss_pred HHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCcccc
Q 020993 188 LEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 188 ~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
. ...+. ...-..-+..+.+.+.+.|++++++|+-+|++
T Consensus 75 ---~---~~~~~--~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~ 112 (189)
T TIGR02432 75 ---K---KKNLE--EAAREARYDFFEEIAKKHGADYILTAHHADDQ 112 (189)
T ss_pred ---c---CCCHH--HHHHHHHHHHHHHHHHHcCCCEEEEcCccHHH
Confidence 0 00000 00001122345667788999999999998875
No 72
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.74 E-value=6.7e-08 Score=90.15 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=71.9
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCC-CcceeeccCCC-CccHHHHHHHHHHhCCcceEEEeChhHHH-HH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGS-QLHSFCIGLEG-SPDLKAAREVADYLGTRHHEFHFTVQEGI-DA 187 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~-~~~~~t~~~~~-~~e~~~A~~va~~lg~~~~~~~~~~~~~~-~~ 187 (319)
.++++++|||+||++++.++++.. |. ++.++++.... ..|.+.++++|+.+|++++++++.. ++. +.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~---------g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~e-ef~~~~ 72 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY---------GYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKE-EFAKDY 72 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc---------CCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHH-HHHHHH
Confidence 468999999999999999997653 22 67777765432 3588899999999999999987763 343 22
Q ss_pred HHHHHHhh----ccCCcCccCchHHHH-HHHHHHHhcCCeEEEeccCcc
Q 020993 188 LEEVIYHI----ETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSD 231 (319)
Q Consensus 188 ~~~~~~~~----e~~~~~~~~~~~~~~-~l~~~a~~~g~~v~ltG~G~D 231 (319)
+...+... ..|.. +..+....+ .+.+.|++.|++++.+|..++
T Consensus 73 i~~~i~~n~~~~gYpl~-~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 73 IFPAIKANALYEGYPLG-TALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHhCccccCCcCc-HHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 22232211 12221 100111112 355668889999999998554
No 73
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.72 E-value=5.3e-08 Score=87.86 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=71.2
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHHHHHHhCC-cceEEEeChhHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGT-RHHEFHFTVQEGIDAL 188 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~va~~lg~-~~~~~~~~~~~~~~~~ 188 (319)
++.+++|||+||+++++++.+... .++.++++... ...|.+.++++++.+|. +|+.++.+. .+.+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG---------~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e-~fl~~l 70 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIG---------DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASE-RFLSAL 70 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhC---------CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcH-HHHHHh
Confidence 368999999999999999988642 46777776433 34688899999999886 999887653 233322
Q ss_pred HHHHHhhccCCcCc-cCchHHHHHHHHHHHhcC-CeEEEeccCcccc
Q 020993 189 EEVIYHIETYDVTT-IRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 233 (319)
Q Consensus 189 ~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~g-~~v~ltG~G~Del 233 (319)
.. ...|.... +........+.+.|++.| ++.+++|+.+|.+
T Consensus 71 ~~----v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~ 113 (295)
T cd01997 71 KG----VTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDV 113 (295)
T ss_pred cC----CCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccch
Confidence 11 11111000 000111224566788889 9999999999875
No 74
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.71 E-value=1.3e-07 Score=92.04 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHH-HHHHh
Q 020993 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAARE-VADYL 170 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~-va~~l 170 (319)
.+.+...+.+++.+. +.++.+++|||+||+++++++.+... .++.++++... ...|.+.+++ +|+.+
T Consensus 200 ~~~~~~~~~l~~~v~-~~~vlva~SGGvDS~vll~ll~~~lg---------~~v~av~vd~g~~~~~e~~~~~~~~a~~l 269 (511)
T PRK00074 200 NFIEEAIEEIREQVG-DKKVILGLSGGVDSSVAAVLLHKAIG---------DQLTCVFVDHGLLRKNEAEQVMEMFREHF 269 (511)
T ss_pred HHHHHHHHHHHHhcC-CCcEEEEeCCCccHHHHHHHHHHHhC---------CceEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 344444445555554 47899999999999999999988752 46777766432 2356777775 67999
Q ss_pred CCcceEEEeChhHHHHHHHHHHHhhccCCcCc-cCchHHHHHHHHHHHhc-CCeEEEeccCcccc
Q 020993 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTT-IRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 233 (319)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~-g~~v~ltG~G~Del 233 (319)
|++|+.++++. .+.+.+... ..|.... +........+.+.|++. |++.+++|+..|.+
T Consensus 270 gi~~~vvd~~~-~f~~~l~g~----~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~ 329 (511)
T PRK00074 270 GLNLIHVDASD-RFLSALAGV----TDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDV 329 (511)
T ss_pred CCcEEEEccHH-HHHHhccCC----CCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchh
Confidence 99999988753 223322111 1111000 11111223456677788 99999999977765
No 75
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.69 E-value=1.6e-07 Score=87.57 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=67.8
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCc-cHHHHHHHHHHhCCc-ceEEEeChhHHHH-HHH
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSP-DLKAAREVADYLGTR-HHEFHFTVQEGID-ALE 189 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-e~~~A~~va~~lg~~-~~~~~~~~~~~~~-~~~ 189 (319)
+.+++|||+||++++.++.+... .++.++++...... +.+.+++.|+.+|++ |+++++.. ++.+ .+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~---------~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~-ef~~~~i~ 70 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGG---------YEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLRE-EFVEDYIF 70 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCC---------CeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHH-HHHHHhhH
Confidence 47899999999999999987642 36788887654333 348899999999996 77776643 3332 222
Q ss_pred HHHHhhc-----cCCcCccCchHHHHHHHHHHHhcCCeEEEeccCc
Q 020993 190 EVIYHIE-----TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (319)
Q Consensus 190 ~~~~~~e-----~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~ 230 (319)
..+.... .|..+.+.-....-.+.+.|++.|++++.+|.-+
T Consensus 71 ~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 71 PAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 2332211 1211111101111234567888999999888765
No 76
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.1e-07 Score=86.52 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCC--CccHHHHHHHHHHh
Q 020993 95 LRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEG--SPDLKAAREVADYL 170 (319)
Q Consensus 95 l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~--~~e~~~A~~va~~l 170 (319)
+...+.+.++....-+..+.|++|||.||++++.++.+.... ..+.++++ ++.. ..+...++.+++.+
T Consensus 6 ~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~--------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 6 LERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR--------IEVEAVHVDHGLRGYSDQEAELVEKLCEKL 77 (298)
T ss_pred HHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccC--------ceEEEEEecCCCCCccchHHHHHHHHHHHh
Confidence 344444444442111468999999999999999999987531 14555554 4443 35778899999999
Q ss_pred CCcceEEEeChhHHHHHHHHHHHhhccCCcCccCch-HHHHHHHHHHHhcCCeEEEeccCcccc
Q 020993 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
|+++.+..++........+ ...+. ..+. ....++.+.|.+.|+++++||+.+|+.
T Consensus 78 ~~~~~v~~~~~~~~~~~~~-----~~~~c---~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~ 133 (298)
T COG0037 78 GIPLIVERVTDDLGRETLD-----GKSIC---AACRRLRRGLLYKIAKELGADKIATGHHLDDQ 133 (298)
T ss_pred CCceEEEEEEeeccccccC-----CCChh---HHHHHHHHHHHHHHHHHcCCCeEEeccCcHHH
Confidence 9988888776432211111 00111 1112 234567888999999999999999974
No 77
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.65 E-value=1.5e-07 Score=71.66 Aligned_cols=76 Identities=28% Similarity=0.316 Sum_probs=56.1
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHHH
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVI 192 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~ 192 (319)
+.|++|||+||++++.++.+.. .++.++++.....+|.+.+++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----------YQVIAVTVDHGISPRLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----------CCEEEEEEcCCCcccHHHHHHHHHH-----------------------
Confidence 4789999999999999998764 2567776654433466677777766
Q ss_pred HhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCcccccc
Q 020993 193 YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (319)
Q Consensus 193 ~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~ 235 (319)
.....+.+.+++.|++++++|+.+|++..
T Consensus 48 --------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~ 76 (103)
T cd01986 48 --------------AREEAAKRIAKEKGAETIATGTRRDDVAN 76 (103)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCcchHHH
Confidence 11234556677889999999999998744
No 78
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.64 E-value=2.7e-07 Score=86.35 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=69.3
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCC-ccHHHHHHHHHHhCCcceEEEeChhHHHHH-H
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADYLGTRHHEFHFTVQEGIDA-L 188 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~e~~~A~~va~~lg~~~~~~~~~~~~~~~~-~ 188 (319)
.++++++|||+||++++.++.+.. |.+++++++..... .|.+.++++|+.+|++|+.+.--.+++.+. +
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---------G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i 76 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---------GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYI 76 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---------CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhc
Confidence 478999999999999999997752 24688888765433 588999999999999875543222344332 2
Q ss_pred HHHHHhhcc-----CCcCccCchHHHHHHHHHHHhcCCeEEEeccCc
Q 020993 189 EEVIYHIET-----YDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (319)
Q Consensus 189 ~~~~~~~e~-----~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~ 230 (319)
...+..... |....+.-....-.+.+.|++.|++++.+|..+
T Consensus 77 ~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tg 123 (404)
T PLN00200 77 FPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATG 123 (404)
T ss_pred CHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcC
Confidence 222221111 111100000112245567888999999887765
No 79
>PLN02347 GMP synthetase
Probab=98.62 E-value=1.9e-07 Score=90.81 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=75.9
Q ss_pred HHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeecc--CCCCccHHHH-HHHHHHhCCcceEE
Q 020993 101 KAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAA-REVADYLGTRHHEF 177 (319)
Q Consensus 101 ~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A-~~va~~lg~~~~~~ 177 (319)
+.++.++..+.++.++||||+||+++++++.+... .++.++++. +....|...+ +.+|+++|++|+.+
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG---------~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vv 290 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAIG---------DRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCV 290 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhC---------CcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEE
Confidence 44455566677899999999999999999998653 468888775 4344566666 77999999999999
Q ss_pred EeChhHHHHHHHHHHHhhccCCcCccCch-HHHH-HHH-HHHHhcCC--eEEEeccCccccc
Q 020993 178 HFTVQEGIDALEEVIYHIETYDVTTIRAS-TPMF-LMS-RKIKSLGV--KMVISGEGSDEIF 234 (319)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~-~l~-~~a~~~g~--~v~ltG~G~Delf 234 (319)
++++ .+++.++.+. ..+.-... +... +..+ .+. +.+.+.|. +.++.|.-.|.+.
T Consensus 291 d~~e-~fl~~l~~~~-~pe~k~~~-~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~ 349 (536)
T PLN02347 291 DASE-RFLSKLKGVT-DPEKKRKI-IGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVI 349 (536)
T ss_pred eCcH-HHHhhCCCCC-ChHHhcch-hCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccc
Confidence 8774 4455433322 11100000 0000 1111 122 22223344 8899999888775
No 80
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.62 E-value=1.8e-07 Score=88.13 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=69.7
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec---cCCCCccHHHHHHHHHHhC-----CcceEEEeCh
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI---GLEGSPDLKAAREVADYLG-----TRHHEFHFTV 181 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~---~~~~~~e~~~A~~va~~lg-----~~~~~~~~~~ 181 (319)
+.++.++||||+||++++.++.+.+ .++.++++ .+....+.+.++++|+.++ ++|+.+++++
T Consensus 176 ~gkvvvllSGGiDS~vaa~l~~k~G----------~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~ 245 (394)
T PRK01565 176 SGKALLLLSGGIDSPVAGYLAMKRG----------VEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTE 245 (394)
T ss_pred CCCEEEEECCChhHHHHHHHHHHCC----------CEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECHH
Confidence 3467799999999999999987753 35565555 3333346677888888885 8899888764
Q ss_pred hHHHHHHHHHHHhhccCC-cCccCchHHHH-HHHHHHHhcCCeEEEeccCccccc
Q 020993 182 QEGIDALEEVIYHIETYD-VTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEIF 234 (319)
Q Consensus 182 ~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~-~l~~~a~~~g~~v~ltG~G~Delf 234 (319)
. .+.+.. . .+. ..++.+-..++ .+.+.|.+.|+.+++||+..|++.
T Consensus 246 ~--~~~i~~---~--~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~ 293 (394)
T PRK01565 246 I--QEEIKK---K--VPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVA 293 (394)
T ss_pred H--HHHHhh---c--CCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEcccccccc
Confidence 2 122211 1 111 11222222233 345667889999999999987764
No 81
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.62 E-value=1.3e-07 Score=79.81 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=68.0
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CC--ccHHHHHHHHHHhCCcceEEEeChhHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GS--PDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~--~e~~~A~~va~~lg~~~~~~~~~~~~~~~~ 187 (319)
++.+++|||.||++++.++.+..... +.++.++++... .. .+.+.++++|+.+|++++.+......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 70 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAP---- 70 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecccc----
Confidence 47899999999999999998875321 135777776543 22 46889999999999999887211000
Q ss_pred HHHHHHhhccCCcCccCch-HHHHHHHHHHHhcCCeEEEeccCcccc
Q 020993 188 LEEVIYHIETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 188 ~~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
....+. ...+. .-...+.+.|.+.|++.+++|+-+|++
T Consensus 71 -------~~~~~~-~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 71 -------KPGGNL-EAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred -------CCCCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 000000 00011 112345677888999999999998874
No 82
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.60 E-value=1e-06 Score=77.93 Aligned_cols=140 Identities=21% Similarity=0.247 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHhh--CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHHHHH
Q 020993 93 LVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVAD 168 (319)
Q Consensus 93 ~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~va~ 168 (319)
++..+.+.+-++.++.. ...+.+.+|||+||+++++++.+...+.. ....+.++..... ...+.+.|+.+++
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~----~~~~~~av~mP~~~~~~~~~~da~~~~~ 81 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGD----SKENVLAVRLPYGYTVQADEEDAQDLAE 81 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhcccc----chhheeeEECCCCCccccCHHHHHHHHH
Confidence 44455555556665542 35688999999999999999999875310 0023666766655 4467888999999
Q ss_pred HhCCcceEEEeChhHHHHHH-HHHHHhhcc-----CCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCccc
Q 020993 169 YLGTRHHEFHFTVQEGIDAL-EEVIYHIET-----YDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (319)
Q Consensus 169 ~lg~~~~~~~~~~~~~~~~~-~~~~~~~e~-----~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~ 239 (319)
.+|++..++++.+ ..+.+ ..+...... ....++.+..-|-.++..|.+.|.-|+=||+ .+|+.-||..
T Consensus 82 ~lg~~~~~i~I~~--~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn-~sE~~~Gy~T 155 (268)
T COG0171 82 ALGIDYKEINIKP--AVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGN-KSELALGYFT 155 (268)
T ss_pred HhCCceEEEecHH--HHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCCc-HHHHhcCcee
Confidence 9999988887764 33332 221111111 1001122223343444455566655555554 8898899963
No 83
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.59 E-value=6.5e-07 Score=90.13 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHhh--CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCC--ccHHHHHHHH
Q 020993 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVA 167 (319)
Q Consensus 92 ~~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~e~~~A~~va 167 (319)
.+++.+.+...++++++. ...+.+.||||+||+++++++.+....-. .-..++.++++...++ ...+.|+++|
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg---~~~~~v~~v~mp~~~ss~~s~~~a~~la 417 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLG---LPRKNILAYTMPGFATTDRTKNNAVALM 417 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhC---CCcceEEEEECCCCCCCHHHHHHHHHHH
Confidence 355666666677776643 46799999999999999999888742100 0003677777743333 3567899999
Q ss_pred HHhCCcceEEEeChhHHHHHHHHHHHhh-c--cC-CcC---ccCchHHHHHHHHHHHhcCCeEEEeccCccccccCcccc
Q 020993 168 DYLGTRHHEFHFTVQEGIDALEEVIYHI-E--TY-DVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 240 (319)
Q Consensus 168 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~-e--~~-~~~---~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~ 240 (319)
+.+|++|+++++.+ ..+...+.+... . .+ ... ++.+.+-+..|...|.+.|.-|+-||+ -+|+.-||..+
T Consensus 418 ~~LGi~~~~i~I~~--~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tgn-~sE~~~Gy~T~ 494 (679)
T PRK02628 418 KALGVTAREIDIRP--AALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTGD-LSELALGWCTY 494 (679)
T ss_pred HHhCCeEEEEEcHH--HHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCCc-hhhHHhCceec
Confidence 99999999999854 333222222111 0 01 100 112223456677778888998888995 77888899754
Q ss_pred c
Q 020993 241 H 241 (319)
Q Consensus 241 ~ 241 (319)
.
T Consensus 495 ~ 495 (679)
T PRK02628 495 G 495 (679)
T ss_pred C
Confidence 4
No 84
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=98.59 E-value=1.6e-07 Score=79.15 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=61.7
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCC--ccHHHHHHHHHHhCCcceEEEeChhHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGS--PDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~--~e~~~A~~va~~lg~~~~~~~~~~~~~~~~ 187 (319)
++.|++|||.||++++.++.+..... +.++.++++ ++... .+....+++++.+|++++...++..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~----- 69 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED----- 69 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH-----
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee-----
Confidence 37899999999999999998875432 235566555 44432 3667899999999999999887640
Q ss_pred HHHHHHhhccCCcCccCchHHH-HHHHHHHHhcCCeEEEeccCcccc
Q 020993 188 LEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 188 ~~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
..........+.... -++.+.|.+.|+.++++|+-+|+.
T Consensus 70 -------~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 70 -------RKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp -------CCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred -------ecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 000000000011112 256678889999999999988864
No 85
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.59 E-value=2.6e-07 Score=86.46 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=69.3
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCC-CccHHHHHHHHHHhCC-cceEEEeChhHHHHH--
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG-SPDLKAAREVADYLGT-RHHEFHFTVQEGIDA-- 187 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~e~~~A~~va~~lg~-~~~~~~~~~~~~~~~-- 187 (319)
++++++|||+||++++.++.+.+ .++.++++.... ..|.+.+++.|+.+|+ +|+++++.. ++.+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g----------~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~-ef~~~~~ 69 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKG----------YEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDARE-EFVKDYG 69 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC----------CEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHH-HHHHhhc
Confidence 47899999999999999998753 467888765433 4588899999999997 788887753 34333
Q ss_pred HHHHH----HhhccCCcCccCchHHHH----HHHHHHHhcCCeEEEeccCc
Q 020993 188 LEEVI----YHIETYDVTTIRASTPMF----LMSRKIKSLGVKMVISGEGS 230 (319)
Q Consensus 188 ~~~~~----~~~e~~~~~~~~~~~~~~----~l~~~a~~~g~~v~ltG~G~ 230 (319)
++.+. +.+..|.. .++... .+.+.|++.|+.++++|.-+
T Consensus 70 ~~~i~~n~~y~~~Y~l~----t~laR~li~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 70 FAAIQANAFYEGTYPLS----TALARPLIAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred hhhhcCCccccCccccc----chhhHHHHHHHHHHHHHHcCCCEEEECccC
Confidence 22221 11111211 111222 34566888999999999844
No 86
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=6e-07 Score=79.17 Aligned_cols=117 Identities=20% Similarity=0.188 Sum_probs=76.0
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeecc----C-------CCCccHHHHHHHHHHhCCcceEEEe
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG----L-------EGSPDLKAAREVADYLGTRHHEFHF 179 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~----~-------~~~~e~~~A~~va~~lg~~~~~~~~ 179 (319)
..|.|++|||+||++-|.++++.+. +++.+-+. . +...|...|+.|+++++++.+.+++
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~----------~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGY----------NVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCC----------CeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 4689999999999999999998764 34443221 1 1235889999999999999999999
Q ss_pred ChhHHHHHHHHHHHh---hccCCcCccCch-HHHHH-HHHHHH-hcCCeEEEeccCccccccCcc
Q 020993 180 TVQEGIDALEEVIYH---IETYDVTTIRAS-TPMFL-MSRKIK-SLGVKMVISGEGSDEIFGGYL 238 (319)
Q Consensus 180 ~~~~~~~~~~~~~~~---~e~~~~~~~~~~-~~~~~-l~~~a~-~~g~~v~ltG~G~Delf~Gy~ 238 (319)
..+...+-+...+.. -.+|++ .+.+. ...+- +.+.|. ..|.+.+.||+.|--.++-+.
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~TPNP-DI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRTPNP-DILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED 139 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-CccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc
Confidence 865443333333321 134554 23221 11121 333333 357889999999977766554
No 87
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.49 E-value=9.1e-07 Score=82.53 Aligned_cols=109 Identities=22% Similarity=0.231 Sum_probs=67.9
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcce-----EEEeChh--
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHH-----EFHFTVQ-- 182 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~-----~~~~~~~-- 182 (319)
..++.+++|||+||++.+.++.+.+ .++.++++... ..+.+.++++|+.++..+. .+.++..
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~krG----------~~V~~v~f~~g-~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~ 248 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKRG----------VEVIPVHIYMG-EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQER 248 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHcC----------CeEEEEEEEeC-HHHHHHHHHHHHHhcccccCCcceEEEEChHHH
Confidence 4578899999999999999998865 45666665322 3467789999999984422 2233322
Q ss_pred -HHHHHHHHHHHhhccCCcCccCchHHH-HHHHHHHHhcCCeEEEeccCcccc
Q 020993 183 -EGIDALEEVIYHIETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 183 -~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
++.+.+.+.. .....++.+...+ ..+.+.|.+.|+..++||+..+.+
T Consensus 249 ~~v~~~i~~~~----~~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 249 ERIIQKLKELK----KENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred HHHHHHHHHhc----cCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 2223222211 1111222222223 345567888999999999987765
No 88
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.46 E-value=1.1e-06 Score=82.32 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=67.7
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC---CCccHHHHHHHHHHhC---CcceEEEeChhH
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE---GSPDLKAAREVADYLG---TRHHEFHFTVQE 183 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~---~~~e~~~A~~va~~lg---~~~~~~~~~~~~ 183 (319)
+.++.+++|||+||++++.++.+.+ .++.++++... ...+.+.++++++.++ .+...+.++-.+
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~krG----------~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~ 241 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMKRG----------CRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFTD 241 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHHcC----------CeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCHH
Confidence 3468899999999999999997754 45666655432 2256778899999884 323343343333
Q ss_pred HHHHHHHHHHhhccCCcCccCchHHHH-HHHHHHHhcCCeEEEeccCcccc
Q 020993 184 GIDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 184 ~~~~~~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~v~ltG~G~Del 233 (319)
..+ ++.....+. ..++.+...+| .+.+.|.+.|++.++||+.+|++
T Consensus 242 ~~~---~i~~~~~~~-~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 242 VQE---EIIHIIPEG-YTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQV 288 (371)
T ss_pred HHH---HHHhcCCCC-ceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhh
Confidence 322 222111111 12222222233 34566788999999999998875
No 89
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.46 E-value=1.1e-06 Score=72.74 Aligned_cols=116 Identities=20% Similarity=0.143 Sum_probs=68.7
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~ 189 (319)
++.+++|||.||++++.++.+...+. .++..+++ +.+.....++++++++.+|++++.+......... ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 72 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEG-LA 72 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHH-HH
Confidence 47899999999999999998875310 14454444 4433345788999999999999988765432211 01
Q ss_pred HHHHhhccCCcCccCch--HHHHHHHHHHHhcCCeEEEeccCcccccc
Q 020993 190 EVIYHIETYDVTTIRAS--TPMFLMSRKIKSLGVKMVISGEGSDEIFG 235 (319)
Q Consensus 190 ~~~~~~e~~~~~~~~~~--~~~~~l~~~a~~~g~~v~ltG~G~Delf~ 235 (319)
........+....-.+. .-.-.+.+.+++.+..++++|.-+||...
T Consensus 73 ~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~ 120 (173)
T cd01713 73 LGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120 (173)
T ss_pred HhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchh
Confidence 11111111111000000 00112344555668899999999999644
No 90
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.45 E-value=1.1e-06 Score=73.03 Aligned_cols=131 Identities=22% Similarity=0.310 Sum_probs=82.9
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--CCccHHHHHHHHHHhCCcceEEEeChhHHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--GSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~ 189 (319)
++.+++|||+||++++.++.+.. .++.++++.+. ...|.+.++++++.+| ++..+....
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~-------- 61 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPARN-------- 61 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCcC--------
Confidence 46899999999999999988753 35677776543 2356789999999999 333322100
Q ss_pred HHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCccccccCCChhHHHHHHHHHHHHhhhhhccccc
Q 020993 190 EVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRAN 269 (319)
Q Consensus 190 ~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d 269 (319)
....-.+.+.|.+.|++.+++|+..|+. +.|... +..+.+. ++.+..
T Consensus 62 ----------------~~~~~~l~~~a~~~g~~~i~~G~~~~d~-~~~~~~-----~~~~~~~----~~~~~~------- 108 (169)
T cd01995 62 ----------------LIFLSIAAAYAEALGAEAIIIGVNAEDY-SGYPDC-----RPEFIEA----MNKALN------- 108 (169)
T ss_pred ----------------HHHHHHHHHHHHHCCCCEEEEeeccCcc-CCCCCC-----CHHHHHH----HHHHHH-------
Confidence 0011134556678899999999999885 334321 1122211 222111
Q ss_pred hhhhccCceeccccCC---HHHHHHHhcC
Q 020993 270 KSTSAWGVEARVPFLD---KEFINTAMSI 295 (319)
Q Consensus 270 r~~~~~gve~r~Pfld---~~lve~~~~l 295 (319)
.....++++..||++ .++++++...
T Consensus 109 -~~~~~~~~v~~PL~~~~K~ei~~~~~~~ 136 (169)
T cd01995 109 -LGTENGIKIHAPLIDLSKAEIVRLGGEL 136 (169)
T ss_pred -hhcCCCeEEEeCcccCCHHHHHHHHhHc
Confidence 234467889999987 6777777653
No 91
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.42 E-value=9.1e-07 Score=82.72 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=56.3
Q ss_pred cceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccce---eeCCCcEEEecC
Q 020993 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFI---SFPPGHIYSSKQ 69 (319)
Q Consensus 2 l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~---~l~pG~~l~~~~ 69 (319)
++|.|++++-|. +.+..+|||.|.||++|...+++.++||||..++-...+.|. +|.||..+.++.
T Consensus 326 ~dGp~aiv~~dg--~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~ 394 (413)
T cd00713 326 WDGPAAIAFTDG--RQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDL 394 (413)
T ss_pred CCCcEEEEEEeC--CEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEEC
Confidence 789999999886 789999999999999999865567999999988855456675 899999987753
No 92
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.40 E-value=2e-06 Score=73.07 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=60.7
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC--------CCccHHHHHHHHHHhCCcceEEEeChh-
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE--------GSPDLKAAREVADYLGTRHHEFHFTVQ- 182 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~--------~~~e~~~A~~va~~lg~~~~~~~~~~~- 182 (319)
++.+++|||.||++.+.++.+.+ .++.++++..+ ...+.+.++++|+.+|++|+.+.++..
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~ 70 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE 70 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCc
Confidence 36799999999999999998854 34555443221 123788999999999999999887431
Q ss_pred -HHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccc
Q 020993 183 -EGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (319)
Q Consensus 183 -~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~De 232 (319)
++.+. ++...+.+++.|++++++|+-.++
T Consensus 71 e~~~~~---------------------l~~~l~~~~~~g~~~vv~G~i~sd 100 (194)
T cd01994 71 EDEVED---------------------LKELLRKLKEEGVDAVVFGAILSE 100 (194)
T ss_pred hHHHHH---------------------HHHHHHHHHHcCCCEEEECccccH
Confidence 11111 122222233348999999997776
No 93
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=98.38 E-value=6.5e-06 Score=74.53 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=68.4
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~ 188 (319)
.++++++|||.||++++.++.+..... +.++..+++ ++.-....+++.++++.+|++++++... +..
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~------~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~--~~i--- 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG------KLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP--EGI--- 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc------CCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh--HHH---
Confidence 568899999999999999999876431 124555554 3332234678999999999999887543 111
Q ss_pred HHHHHhhccCCc-CccCchH-HHHHHHHHHHhcCCeEEEeccCccc
Q 020993 189 EEVIYHIETYDV-TTIRAST-PMFLMSRKIKSLGVKMVISGEGSDE 232 (319)
Q Consensus 189 ~~~~~~~e~~~~-~~~~~~~-~~~~l~~~a~~~g~~v~ltG~G~De 232 (319)
. .....+.. .+..+.. -...+.+.+++.|++++++|.-.||
T Consensus 97 ~---~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 97 A---RGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred h---cCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 1 11111110 0111111 1234556677789999999999998
No 94
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.38 E-value=2.1e-06 Score=74.41 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=58.8
Q ss_pred EeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcc-eeeccCC-------CCccHHHHHHHHHHhCCcceEEEeChhHHHH
Q 020993 115 VLLSGGLDSSLVAAVASRYLADSEAACQWGSQLH-SFCIGLE-------GSPDLKAAREVADYLGTRHHEFHFTVQEGID 186 (319)
Q Consensus 115 v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~-~~t~~~~-------~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~ 186 (319)
+++|||+||++.+..+.+.+ .++. .+++..+ ...+.+.++++|+.+|++|..++++...- +
T Consensus 2 vl~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~-~ 70 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG----------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKE-K 70 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC----------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCCh-H
Confidence 68999999999999888754 2443 3333211 23588999999999999999988763100 0
Q ss_pred HHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccc
Q 020993 187 ALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 232 (319)
Q Consensus 187 ~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~De 232 (319)
..+ .++...+.+++.|++.+++|.-.++
T Consensus 71 ~~~------------------~l~~~l~~~~~~g~~~vv~G~i~sd 98 (218)
T TIGR03679 71 EVE------------------DLKGALKELKREGVEGIVTGAIASR 98 (218)
T ss_pred HHH------------------HHHHHHHHHHHcCCCEEEECCcccH
Confidence 000 0222233444459999999987763
No 95
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.6e-06 Score=69.30 Aligned_cols=62 Identities=32% Similarity=0.377 Sum_probs=50.5
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQE 183 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~ 183 (319)
.+++++|||.|||+-|.++.+.+.+ ..++|.++|. -+...+|++.|+.+|.+|..+.++.+-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgye--------v~LVTvnFGv--~d~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGYE--------VELVTVNFGV--LDSWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCCC--------cEEEEEEecc--ccchhhHHHHHHHhCCCcceeccCHHH
Confidence 4789999999999999999988653 3455555554 467899999999999999999988643
No 96
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.31 E-value=3.4e-06 Score=81.68 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=65.8
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccC--CCC--ccHHHHHHHHHHhCCcce--EEEeChhHH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGL--EGS--PDLKAAREVADYLGTRHH--EFHFTVQEG 184 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~--~e~~~A~~va~~lg~~~~--~~~~~~~~~ 184 (319)
.++.++||||+||++.+.++.+.+ ..+.++++.+ ... .+.+.++.++++++.+|. .+.++-.+.
T Consensus 178 gk~lvllSGGiDS~va~~~~~krG----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~~~ 247 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRRG----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFEPV 247 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHcC----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecHHH
Confidence 357799999999999999887754 3566655543 322 267889999998886554 444443332
Q ss_pred HHHHHHHHHhhccCCcCccCchHHHH-HHHHHHHhcCCeEEEeccCcccc
Q 020993 185 IDALEEVIYHIETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 185 ~~~~~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~v~ltG~G~Del 233 (319)
.. ++..... +....+..-..++ ...+.|.+.|+..++||+..|++
T Consensus 248 ~~---~i~~~~~-~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dv 293 (482)
T PRK01269 248 VG---EILEKVD-DGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQV 293 (482)
T ss_pred HH---HHHhcCC-CceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhh
Confidence 22 2221111 1111110011122 22566778999999999998875
No 97
>PRK05370 argininosuccinate synthase; Validated
Probab=98.29 E-value=6.4e-06 Score=77.08 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=76.7
Q ss_pred HHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCC--CccHHHHHHHHHHhCC-cceEEEeChh
Q 020993 106 RLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG--SPDLKAAREVADYLGT-RHHEFHFTVQ 182 (319)
Q Consensus 106 rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~e~~~A~~va~~lg~-~~~~~~~~~~ 182 (319)
.+....+|++++|||+|||+++..+++.. -.++||++..-. ..|.+.+++-|..+|. +|.+++...
T Consensus 7 ~l~~~~KVvLAYSGGLDTSv~l~wL~e~~----------~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~- 75 (447)
T PRK05370 7 HLPVGQRVGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRA- 75 (447)
T ss_pred hCCCCCEEEEEecCCchHHHHHHHHHhcC----------CeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHH-
Confidence 34455689999999999999999888752 468999875433 5688899999999999 588877754
Q ss_pred HHHHHHHHHHHhhc---------cCCcCccCchHHH--HHHHHHHHhcCCeEEE---eccCcccc
Q 020993 183 EGIDALEEVIYHIE---------TYDVTTIRASTPM--FLMSRKIKSLGVKMVI---SGEGSDEI 233 (319)
Q Consensus 183 ~~~~~~~~~~~~~e---------~~~~~~~~~~~~~--~~l~~~a~~~g~~v~l---tG~G~Del 233 (319)
++.+..-..+...- .|.... .+.+. -.+.+.|++.|++++. ||-|-|++
T Consensus 76 eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~--LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 76 QLVAEGIAAIQCGAFHISTGGVTYFNTTP--LGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHHHHHHHHHcCCccccccCccccCCCc--chHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH
Confidence 45443224444321 111111 12222 2345678889999887 66777775
No 98
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=98.24 E-value=2.6e-06 Score=72.16 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec---cCCCCccHHHHHHHHHHhCC-----cceEEEeCh
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI---GLEGSPDLKAAREVADYLGT-----RHHEFHFTV 181 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~---~~~~~~e~~~A~~va~~lg~-----~~~~~~~~~ 181 (319)
..++.++||||+||.+-+.++.+.+ ..+.+.++ .+.+....+.++++++.+.. ....+.++-
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~krG----------~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKRG----------CEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCBT-----------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred CceEEEEecCCccHHHHHHHHHHCC----------CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 4568899999999999999988765 34554443 23333445556666666542 333333443
Q ss_pred hHHHHHHHHHHHhhccCCcCccCchHHHHHHH-HHHHhcCCeEEEeccCcccc
Q 020993 182 QEGIDALEEVIYHIETYDVTTIRASTPMFLMS-RKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 182 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~-~~a~~~g~~v~ltG~G~Del 233 (319)
.++... +..... ...+++.+-..|+..+ +.|.+.|++.++||+--.++
T Consensus 73 ~~~~~~---i~~~~~-~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 73 TEVQKE---ILRGVK-ERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp HHHHHH---HHHHS--GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSST
T ss_pred HHHHHH---HHhcCC-ccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHH
Confidence 333332 222221 1122333333445444 45678999999999865554
No 99
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=98.22 E-value=6.4e-06 Score=76.48 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=66.4
Q ss_pred EEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCC-ccHHHHHHHHHHhCC-cceEEEeChhHHH-HHHHH
Q 020993 114 GVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADYLGT-RHHEFHFTVQEGI-DALEE 190 (319)
Q Consensus 114 ~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~e~~~A~~va~~lg~-~~~~~~~~~~~~~-~~~~~ 190 (319)
.+++|||+|||+++..+.+... .+++||++..-.. .|.+.+++-|..+|. +++.++... ++. +.+-.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~---------~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~-ef~~~~i~~ 70 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGG---------YEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARD-EFAEDYIFP 70 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTT---------EEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HH-HHHHHTHHH
T ss_pred CeeeCCChHHHHHHHHHHhhcC---------ceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHH-HHHHHHHHH
Confidence 3789999999999999988762 4789998765433 688899999999998 899988764 454 44444
Q ss_pred HHHhhccCCc-CccCchHHHH----HHHHHHHhcCCeEEE---eccCcccc
Q 020993 191 VIYHIETYDV-TTIRASTPMF----LMSRKIKSLGVKMVI---SGEGSDEI 233 (319)
Q Consensus 191 ~~~~~e~~~~-~~~~~~~~~~----~l~~~a~~~g~~v~l---tG~G~Del 233 (319)
.+...-.+.. -.+..++... .+.+.|++.|++++. ||-|-|++
T Consensus 71 aI~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv 121 (388)
T PF00764_consen 71 AIKANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV 121 (388)
T ss_dssp HHHTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH
T ss_pred HHHHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh
Confidence 4443211111 0011122222 244567889999887 56677764
No 100
>PRK08576 hypothetical protein; Provisional
Probab=98.19 E-value=2.1e-05 Score=74.51 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhCC--CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeecc--CCCCccHHHHHHHHHHh
Q 020993 95 LRKAFEKAVVKRLMTDV--PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEGSPDLKAAREVADYL 170 (319)
Q Consensus 95 l~~~l~~av~~rl~~~~--~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~e~~~A~~va~~l 170 (319)
+.+.+.+.+.+.++... ++.+++|||.||++++.++.+... ++.++++. +......++++++++.+
T Consensus 217 ~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~----------~V~aV~iDTG~e~pet~e~~~~lae~L 286 (438)
T PRK08576 217 VLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFG----------DVTAVYVDTGYEMPLTDEYVEKVAEKL 286 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhCC----------CCEEEEeCCCCCChHHHHHHHHHHHHc
Confidence 44444444444444333 799999999999999998887652 35666553 33334578899999999
Q ss_pred CCcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHH-HHHHHHHHHhcCCeEEEeccCccc
Q 020993 171 GTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDE 232 (319)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~v~ltG~G~De 232 (319)
|++++...++... ... ....|...+-.+... ...+.+.+++.|+.++++|+-.||
T Consensus 287 GI~lii~~v~~~~---~~~----~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~dE 342 (438)
T PRK08576 287 GVDLIRAGVDVPM---PIE----KYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGE 342 (438)
T ss_pred CCCEEEcccCHHH---Hhh----hcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHH
Confidence 9998773232111 111 111121111111111 123556677788999999987777
No 101
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=98.16 E-value=6.6e-06 Score=68.89 Aligned_cols=125 Identities=21% Similarity=0.140 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhh---------C-CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHH
Q 020993 94 VLRKAFEKAVVKRLMT---------D-VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAA 163 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~---------~-~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A 163 (319)
+..+.|++.++.|+.. | .+++|++|||.|||+.+.++...+. .+.--|+-.++ .=...+
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g~----------~v~p~t~~Lp~-~ir~n~ 102 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAGF----------TVDPGTAILPD-HIRRNK 102 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhce----------eeccccccCCH-HHhHHH
Confidence 4566677777777742 2 6799999999999999998887542 11111111221 123457
Q ss_pred HHHHHHhCCcceEEEeChhHHHHHHHHHHH-hhccCCcCccCc-hHHHHHHHHHHHhcCCeEEEeccCccccccCccc
Q 020993 164 REVADYLGTRHHEFHFTVQEGIDALEEVIY-HIETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 239 (319)
Q Consensus 164 ~~va~~lg~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~-~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy~~ 239 (319)
...+..+|..+..+..+ +.++.. ..+.-.+++-++ ++..-.+..+|++.+++++++|++ |-.||..
T Consensus 103 ~~l~~~lg~~p~yveed-------l~~i~kGalnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDl---Ls~G~~s 170 (255)
T COG1365 103 EELETLLGEVPEYVEED-------LEDIEKGALNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDL---LSTGYGS 170 (255)
T ss_pred HHHHHHHccCHHHHHHH-------HHHHHhhhccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccc---ccccccc
Confidence 77889999876654322 222221 111111122332 233445667889999999999854 5568863
No 102
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=98.15 E-value=3.3e-05 Score=77.96 Aligned_cols=90 Identities=22% Similarity=0.213 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhh--CCCeEEeecCcccHHHHHHHH-------HHHhhhhhhh------------hh--------
Q 020993 92 PLVLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVA-------SRYLADSEAA------------CQ-------- 142 (319)
Q Consensus 92 ~~~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~-------~~~~~~~~~~------------~~-------- 142 (319)
.+++.......++.+++. ...+.+.||||+||+++|+++ .+....+... ..
T Consensus 328 ~~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (700)
T PLN02339 328 EEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKE 407 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhh
Confidence 356777766777777753 356889999999999988885 3333110000 00
Q ss_pred -cCCCcceeeccCCCC--ccHHHHHHHHHHhCCcceEEEeCh
Q 020993 143 -WGSQLHSFCIGLEGS--PDLKAAREVADYLGTRHHEFHFTV 181 (319)
Q Consensus 143 -~~~~~~~~t~~~~~~--~e~~~A~~va~~lg~~~~~~~~~~ 181 (319)
.+.-+++++.+..++ .....|+++|+.+|+.|+++++++
T Consensus 408 ~~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~ 449 (700)
T PLN02339 408 FAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDG 449 (700)
T ss_pred hhcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 000145666654443 346789999999999999999874
No 103
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.14 E-value=1.5e-05 Score=76.28 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=54.2
Q ss_pred HHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeecc--CCC-Cc-cHHHHHHHHHHhCCcce
Q 020993 100 EKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIG--LEG-SP-DLKAAREVADYLGTRHH 175 (319)
Q Consensus 100 ~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~--~~~-~~-e~~~A~~va~~lg~~~~ 175 (319)
.+.++..+....++.|++|||.||++++.++.+..... .+.++.++++. ... ++ +.++++++|+.+|++++
T Consensus 5 ~~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~ 79 (436)
T PRK10660 5 TLTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-----PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLV 79 (436)
T ss_pred HHHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEE
Confidence 34445556667889999999999999999987643110 02356666654 332 22 35788999999999999
Q ss_pred EEEeCh
Q 020993 176 EFHFTV 181 (319)
Q Consensus 176 ~~~~~~ 181 (319)
...++.
T Consensus 80 ~~~~~~ 85 (436)
T PRK10660 80 VERVQL 85 (436)
T ss_pred EEEEec
Confidence 887753
No 104
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=98.09 E-value=4e-05 Score=70.06 Aligned_cols=113 Identities=22% Similarity=0.226 Sum_probs=73.8
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCC-CccHHHHHHHHHHhCCc-ceEEEeChhHHH-HH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG-SPDLKAAREVADYLGTR-HHEFHFTVQEGI-DA 187 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~e~~~A~~va~~lg~~-~~~~~~~~~~~~-~~ 187 (319)
.+|++++|||+|+|++...+.+.+. ..+.|||+..-. ..|.+.+++-|..+|.. |..++... ++. +.
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~---------~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~re-eF~~~y 74 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGG---------AEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDARE-EFVEDY 74 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcC---------ceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHH-HHHHHH
Confidence 5689999999999999999988762 478899875543 47899999999999986 77777654 444 33
Q ss_pred HHHHHHhhccCCc-CccCchHHHHH----HHHHHHhcCCeEEE---eccCcccc
Q 020993 188 LEEVIYHIETYDV-TTIRASTPMFL----MSRKIKSLGVKMVI---SGEGSDEI 233 (319)
Q Consensus 188 ~~~~~~~~e~~~~-~~~~~~~~~~~----l~~~a~~~g~~v~l---tG~G~Del 233 (319)
+-..++....+.. -.+..+++..+ +-+.|++.|+..+- ||-|-|.+
T Consensus 75 i~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 75 IFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 3333332211110 00111222223 33457788888776 67788876
No 105
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.06 E-value=1.4e-05 Score=80.33 Aligned_cols=68 Identities=18% Similarity=0.400 Sum_probs=58.4
Q ss_pred CcceeEEEEEEEC-CCCEEEEEecCCCCcceEEEEecC--------------------CeEEEeecchhhhhccccceee
Q 020993 1 MLDGMFSFVLLDT-RDKSFIAARDAIGVTPLYMGWGLD--------------------GSIWFASEMKALSDDCERFISF 59 (319)
Q Consensus 1 ~l~G~fa~~i~D~-~~~~l~l~rD~~G~kpLyy~~~~~--------------------~~~~fsSe~~~l~~~~~~i~~l 59 (319)
+|+|+|||++... ..++++++||+ +||++...++ +.++|||++.+|....+.|..|
T Consensus 187 ~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~~~~t~~~~~l 263 (670)
T PTZ00394 187 MVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSFAEYTREVVFL 263 (670)
T ss_pred HccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHHHHhhceEEEe
Confidence 5899999999853 45899999999 9999998531 4799999999999999999999
Q ss_pred CCCcEEEecCCe
Q 020993 60 PPGHIYSSKQGG 71 (319)
Q Consensus 60 ~pG~~l~~~~~~ 71 (319)
++|++..+..+.
T Consensus 264 ~dg~~~~~~~~~ 275 (670)
T PTZ00394 264 EDGDIAHYCDGA 275 (670)
T ss_pred cCCeEEEEECCE
Confidence 999998876543
No 106
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=98.04 E-value=1.4e-05 Score=80.53 Aligned_cols=68 Identities=19% Similarity=0.479 Sum_probs=58.0
Q ss_pred CcceeEEEEEEECC-CCEEEEEecCCCCcceEEEEec--C---------------------CeEEEeecchhhhhccccc
Q 020993 1 MLDGMFSFVLLDTR-DKSFIAARDAIGVTPLYMGWGL--D---------------------GSIWFASEMKALSDDCERF 56 (319)
Q Consensus 1 ~l~G~fa~~i~D~~-~~~l~l~rD~~G~kpLyy~~~~--~---------------------~~~~fsSe~~~l~~~~~~i 56 (319)
+|+|+|||++.+.. .++++++||+ +||++...+ + +.++||||..+|....+.|
T Consensus 181 ~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~~al~~~~~~~ 257 (680)
T PLN02981 181 QLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDASAVVEHTKRV 257 (680)
T ss_pred hccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCHHHHHHhcCEE
Confidence 58999999999965 4999999996 899888752 0 3699999999999999999
Q ss_pred eeeCCCcEEEecCCe
Q 020993 57 ISFPPGHIYSSKQGG 71 (319)
Q Consensus 57 ~~l~pG~~l~~~~~~ 71 (319)
..|+||+++.++.+.
T Consensus 258 ~~l~~gei~~i~~~~ 272 (680)
T PLN02981 258 LVIEDNEVVHLKDGG 272 (680)
T ss_pred EEECCCeEEEEECCe
Confidence 999999999886543
No 107
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.95 E-value=3.5e-05 Score=71.83 Aligned_cols=65 Identities=32% Similarity=0.348 Sum_probs=54.8
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc-cccceeeCCCcEEEe
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD-CERFISFPPGHIYSS 67 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~ 67 (319)
++.|.|++++--. +.|+.+|||.|+|||-+.+..+|..+||||-.+|-.. .+-++.++||+.+.+
T Consensus 160 ~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i 225 (470)
T COG0034 160 RVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVII 225 (470)
T ss_pred hcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEE
Confidence 4789999999865 4899999999999999998645559999999888654 456789999999874
No 108
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=97.88 E-value=9e-05 Score=66.70 Aligned_cols=124 Identities=11% Similarity=0.016 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCccHHHHHHHHHHhC
Q 020993 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLG 171 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~va~~lg 171 (319)
+-.++|++++..- ...++++|||.||++++.++.+.+.+. +.++..+++ |+.-..-.++..++++.+|
T Consensus 7 esi~ilRe~~~~f----~~~vv~~SGGKDS~VlLhLa~kaf~~~------~~p~~vl~IDTG~~F~Et~efrd~~a~~~g 76 (294)
T TIGR02039 7 EAIHIIREVAAEF----ERPVMLYSIGKDSSVLLHLARKAFYPG------PLPFPLLHVDTGWKFREMIAFRDHMVAKYG 76 (294)
T ss_pred HHHHHHHHHHHhc----CCcEEEEecChHHHHHHHHHHHHhccc------CCCeEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 3444555555432 234688999999999999999986432 134555655 3332223578889999999
Q ss_pred CcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCcccc
Q 020993 172 TRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
++++++.... .+...+.. .. .+........-...|.+.+.+.|.+++++|.-.||-
T Consensus 77 l~l~v~~~~~-~~~~g~~~----~~-~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe 132 (294)
T TIGR02039 77 LRLIVHSNEE-GIADGINP----FT-EGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE 132 (294)
T ss_pred CCEEEEechh-hhhcCccc----cc-cChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh
Confidence 9988876532 11100000 00 000000011122446666777899999999998874
No 109
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.80 E-value=7.6e-05 Score=67.81 Aligned_cols=68 Identities=26% Similarity=0.363 Sum_probs=56.0
Q ss_pred CcceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCC----eEEEeecchhhhhc-cccceeeCCCcEEEecCC
Q 020993 1 MLDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDG----SIWFASEMKALSDD-CERFISFPPGHIYSSKQG 70 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~----~~~fsSe~~~l~~~-~~~i~~l~pG~~l~~~~~ 70 (319)
+++|.|+.++.-. ++|+.+|||+|.|||...+-.+. .++||||--++... .+-.+.+.||+++.++..
T Consensus 163 ~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~ 235 (474)
T KOG0572|consen 163 LLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRN 235 (474)
T ss_pred hcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecC
Confidence 4789999998754 66999999999999999875332 69999999888765 566789999999987643
No 110
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=97.72 E-value=0.00016 Score=63.77 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCccHHHHHHHHHHhCCcc
Q 020993 97 KAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRH 174 (319)
Q Consensus 97 ~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~va~~lg~~~ 174 (319)
+.++++++.. ..++.+.+|||.||++++.++.+.. .++..+.+ |+....-.++++++++++|+++
T Consensus 30 e~i~~a~~~~---~~~i~vs~SGGKDS~vlL~L~~~~~----------~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l 96 (241)
T PRK02090 30 ERLAWALENF---GGRLALVSSFGAEDAVLLHLVAQVD----------PDIPVIFLDTGYLFPETYRFIDELTERLLLNL 96 (241)
T ss_pred HHHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCCE
Confidence 3444444431 2358999999999999999999864 24555554 4433234578999999999999
Q ss_pred eEEEeC
Q 020993 175 HEFHFT 180 (319)
Q Consensus 175 ~~~~~~ 180 (319)
+++...
T Consensus 97 ~v~~~~ 102 (241)
T PRK02090 97 KVYRPD 102 (241)
T ss_pred EEECCC
Confidence 988755
No 111
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00049 Score=60.29 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCccHHHHHHH-HHHh
Q 020993 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREV-ADYL 170 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~v-a~~l 170 (319)
.+.+...+.++.++. +.++-++||||+|||..+.++.++.. .+++|.-+ |+-.-.|.+...++ .+++
T Consensus 6 ~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~AiG---------d~l~cvfVD~GLlR~~E~e~V~~~f~~~~ 75 (315)
T COG0519 6 NFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAIG---------DQLTCVFVDHGLLRKGEAEQVVEMFREHL 75 (315)
T ss_pred HHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHhh---------cceEEEEecCCcccCCcHHHHHHHHHhhc
Confidence 344445556666664 67889999999999999999999874 57777765 33334565555554 4558
Q ss_pred CCcceEEEe
Q 020993 171 GTRHHEFHF 179 (319)
Q Consensus 171 g~~~~~~~~ 179 (319)
|++...++-
T Consensus 76 ~~nl~~VdA 84 (315)
T COG0519 76 GLNLIVVDA 84 (315)
T ss_pred CCceEEEch
Confidence 888777653
No 112
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.51 E-value=0.00075 Score=61.12 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=65.8
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC-CCcc-HHHHHHHHHHhCCcceEEEeChhHHHHHH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LKAAREVADYLGTRHHEFHFTVQEGIDAL 188 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~e-~~~A~~va~~lg~~~~~~~~~~~~~~~~~ 188 (319)
.++++++|||.||++++.++.+.+... +.++..+.+... ..+| .++..++++.+|+++++.... +. ++
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~------~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~~-~~-~~-- 107 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPT------RPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHNP-DG-IA-- 107 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhccc------CCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecCh-HH-HH--
Confidence 346799999999999999999886432 135566665432 2234 578889999999988776532 22 11
Q ss_pred HHHHHhhccCCc-CccCch-HHHHHHHHHHHhcCCeEEEeccCccc
Q 020993 189 EEVIYHIETYDV-TTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDE 232 (319)
Q Consensus 189 ~~~~~~~e~~~~-~~~~~~-~~~~~l~~~a~~~g~~v~ltG~G~De 232 (319)
. ....+.. ....+. .-..-|.+.+.+.|.+++++|.=-||
T Consensus 108 -~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE 149 (312)
T PRK12563 108 -R---GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDE 149 (312)
T ss_pred -h---CCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHH
Confidence 1 1111110 000011 11233455556678899999988887
No 113
>PRK08557 hypothetical protein; Provisional
Probab=97.50 E-value=0.0016 Score=61.61 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=43.6
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceee--ccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
.++.+.+|||.||++++.++.+... ++..++ .|.+...-.++++++++++|++.+.+.
T Consensus 182 ~~i~vsfSGGKDS~vlL~L~~~~~~----------~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 182 YAINASFSGGKDSSVSTLLAKEVIP----------DLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHhCC----------CCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 4688999999999999999887642 344444 344433346789999999999988865
No 114
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.46 E-value=0.00037 Score=74.04 Aligned_cols=65 Identities=22% Similarity=0.195 Sum_probs=53.2
Q ss_pred cceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccc-e--eeCCCcEEEec
Q 020993 2 LDGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERF-I--SFPPGHIYSSK 68 (319)
Q Consensus 2 l~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i-~--~l~pG~~l~~~ 68 (319)
++|.|++++-|. +.+..+|||.|.|||-|....++.+++|||..++--....+ + +|.||..+.++
T Consensus 336 wdGpaaiv~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 336 WDGPAGIVMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred CCCCEEEEEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 489999999985 79999999999999977676567799999988765443443 4 79999998764
No 115
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=97.45 E-value=0.00044 Score=57.31 Aligned_cols=108 Identities=19% Similarity=0.077 Sum_probs=56.3
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEV 191 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~ 191 (319)
.+.+.+|||.||++++.++.+...+ ..+.....+.+...-.++++++++.+|++.+...... .....+...
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~--------~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~ 71 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRK--------VPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPE-TFEQRFILY 71 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTT--------CEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTS-HHHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEecCccCHHHHHHHHHHHhhhhhhhhhccccc-chhhccccc
Confidence 3679999999999999999988742 1233334444332335889999999999965554432 222222211
Q ss_pred HHhhccCCcCccCc-hHHH---HHHHHHHHhcCCeEEEeccCcccc
Q 020993 192 IYHIETYDVTTIRA-STPM---FLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 192 ~~~~e~~~~~~~~~-~~~~---~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
- .|.. .... .... --+.+..++.+..++++|.=+||=
T Consensus 72 ~----~~~~-~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es 112 (174)
T PF01507_consen 72 G----WPSK-LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADES 112 (174)
T ss_dssp H----HSTT-HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTST
T ss_pred c----ccch-hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhch
Confidence 1 1110 0000 0000 112334455677799999988884
No 116
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=97.30 E-value=0.00099 Score=61.83 Aligned_cols=109 Identities=17% Similarity=0.261 Sum_probs=56.9
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCC-CccH--HHHHHHH-HHhCCcc---eEEEeChh
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEG-SPDL--KAAREVA-DYLGTRH---HEFHFTVQ 182 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~e~--~~A~~va-~~lg~~~---~~~~~~~~ 182 (319)
.+++.++||||+||-+-+.++-+.+ .++...++..++ ..+. .-+...+ ..+.-.+ ....++-.
T Consensus 175 ~Gk~l~LlSGGIDSPVA~~l~mkRG----------~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~ 244 (383)
T COG0301 175 QGKVLLLLSGGIDSPVAAWLMMKRG----------VEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFT 244 (383)
T ss_pred CCcEEEEEeCCCChHHHHHHHHhcC----------CEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchH
Confidence 3457799999999999998887754 456555553322 2222 2222333 3333322 22233333
Q ss_pred HHHHHHHHHHHhh-ccCCcCccCchHHHHHHH-HHHHhcCCeEEEeccCcccc
Q 020993 183 EGIDALEEVIYHI-ETYDVTTIRASTPMFLMS-RKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 183 ~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~l~-~~a~~~g~~v~ltG~G~Del 233 (319)
++.+.+. ... +.+. ++-.--.||-++ +.|.+.|+..++||+.--++
T Consensus 245 ~v~~~i~---~~~~~~y~--~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQV 292 (383)
T COG0301 245 EVQEEIL---EKVPESYR--CVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQV 292 (383)
T ss_pred HHHHHHH---hhcCccce--ehHHHHHHHHHHHHHHHHhCCeEEEecCcchhh
Confidence 3333332 222 1111 121122345444 46778899999999865443
No 117
>PRK13795 hypothetical protein; Provisional
Probab=97.26 E-value=0.0015 Score=65.52 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=46.4
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceee--ccCCCCccHHHHHHHHHHhCCcceEEEeC
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLEGSPDLKAAREVADYLGTRHHEFHFT 180 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~e~~~A~~va~~lg~~~~~~~~~ 180 (319)
+.++.+.+|||.||++++.++.+... ++..+. .+.+.....++++++++++|++++.+...
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~~----------~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~ 305 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREALK----------DFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAG 305 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhCC----------CcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEccc
Confidence 45799999999999999999998753 344443 34443345688999999999998887654
No 118
>PRK13794 hypothetical protein; Provisional
Probab=97.16 E-value=0.0058 Score=59.18 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=45.1
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCccHHHHHHHHHHhCCcceEEEe
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHF 179 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~va~~lg~~~~~~~~ 179 (319)
..++.+.+|||.||++++.++.+... .++..+.+ |++.....++++++++++|++++.+..
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~---------~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~ 309 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALG---------INFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKS 309 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhC---------CCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEch
Confidence 35799999999999999999887742 24444443 444334567899999999999877653
No 119
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0016 Score=57.80 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHH
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE 189 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~ 189 (319)
...+.++.|||+|+|.|++.+.+++ -.+.+|........|.+.|++-|-..|..-..+.=-.+++.+.
T Consensus 5 ~~~vVLAySGgLDTscil~WLkeqG----------yeViay~AnvGQ~edfe~ar~kAlk~Gakk~~~ed~~~eFved-- 72 (412)
T KOG1706|consen 5 KKSVVLAYSGGLDTSCILAWLKEQG----------YEVIAYLANVGQKEDFEEARKKALKSGAKKVVVEDVREEFVED-- 72 (412)
T ss_pred CceEEEEecCCcCchhhhHHHHhcC----------ceEEEeeccccchhhHHHHHHhhhhcCceEEEehhhhHHHHhh--
Confidence 3567799999999999999999876 4788997654445688899999999998654443222344332
Q ss_pred HHHHhh-------c-cCCc-Ccc-CchHHHHHHHHHHHhcCCeEE---EeccCccccccCccccccCC
Q 020993 190 EVIYHI-------E-TYDV-TTI-RASTPMFLMSRKIKSLGVKMV---ISGEGSDEIFGGYLYFHKAP 244 (319)
Q Consensus 190 ~~~~~~-------e-~~~~-~~~-~~~~~~~~l~~~a~~~g~~v~---ltG~G~Delf~Gy~~~~~~~ 244 (319)
.+|.. | .+.. +++ +..++. .-.+.|++.|+..+ -||-|.|.+-.--.+|...|
T Consensus 73 -fi~Pa~qs~a~YEd~YLLGTSlaRp~ia~-~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~ysl~P 138 (412)
T KOG1706|consen 73 -FIWPALQSSALYEDRYLLGTSLARPVIAK-AQVDVAQREGAKAVSHGCTGKGNDQVRFELTFYSLKP 138 (412)
T ss_pred -cchhhhhhcchhhceeeeccccccchhhh-hhhhHHhhcCceeeecccccCCCcceeeeeeeeccCC
Confidence 22211 1 1100 000 001110 11123555677654 48889998866655555443
No 120
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=97.14 E-value=0.0016 Score=57.65 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=48.2
Q ss_pred EEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCeEE
Q 020993 6 FSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGGLR 73 (319)
Q Consensus 6 fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~~~ 73 (319)
|+|++-|. .+|+..||+. ||||... ++.++||||. |-.. +.++.+|||+.+.++++.++
T Consensus 189 ~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~-~~W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 189 LNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD-PGWQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred eEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC-CCceEeCCCeEEEEECCcEE
Confidence 99999885 7899999987 9999985 5689999997 3222 48999999999998766543
No 121
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=97.12 E-value=0.0065 Score=52.60 Aligned_cols=59 Identities=29% Similarity=0.242 Sum_probs=41.9
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCccee-eccCC-------CCccHHHHHHHHHHhCCcceEEEeCh
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSF-CIGLE-------GSPDLKAAREVADYLGTRHHEFHFTV 181 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~-t~~~~-------~~~e~~~A~~va~~lg~~~~~~~~~~ 181 (319)
++++++|||.||+.-+..+.+. . +++++ ++-.. +..+...++..|+.+|++++.+..+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-H----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-C----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 4688999999999988877665 2 23332 22111 13467889999999999998877654
No 122
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=97.11 E-value=0.0021 Score=57.14 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=50.0
Q ss_pred eeEEEEEEECCCCEEEEEecCCCCcceEEEEec-----------------CCeEEEeecchhhhhccccceeeCCCcEEE
Q 020993 4 GMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGL-----------------DGSIWFASEMKALSDDCERFISFPPGHIYS 66 (319)
Q Consensus 4 G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~-----------------~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~ 66 (319)
|.|+|++.|. .+++++||+. .+||||.... ++.++||||.-+... +.+.+|||+.+.
T Consensus 180 ~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE~l~~~~---~w~~v~~ge~~~ 253 (257)
T cd01908 180 GRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTDDE---GWTEVPPGELVV 253 (257)
T ss_pred eEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeCCCCCCC---CceEeCCCEEEE
Confidence 7899999886 7899999999 8999999742 368999999776543 799999999988
Q ss_pred ecC
Q 020993 67 SKQ 69 (319)
Q Consensus 67 ~~~ 69 (319)
++.
T Consensus 254 i~~ 256 (257)
T cd01908 254 VSE 256 (257)
T ss_pred EeC
Confidence 754
No 123
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.90 E-value=0.0034 Score=45.64 Aligned_cols=21 Identities=52% Similarity=0.665 Sum_probs=18.6
Q ss_pred eEEeecCcccHHHHHHHHHHH
Q 020993 113 FGVLLSGGLDSSLVAAVASRY 133 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~ 133 (319)
+.+.+|||.||+.++.++.+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~ 21 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRL 21 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHH
Confidence 468999999999999998876
No 124
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=96.86 E-value=0.012 Score=50.62 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=42.8
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC-CCcc-HHHHHHHHHHhCCcceEEEe
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-GSPD-LKAAREVADYLGTRHHEFHF 179 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~e-~~~A~~va~~lg~~~~~~~~ 179 (319)
..+++.+|||.||++++.++.+... ++..+.+... +.+| .++.+++++.+|++...+..
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~~----------~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~ 74 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKISP----------DIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKP 74 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcCC----------CCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECC
Confidence 3689999999999999999988653 4455544332 2244 46799999999987666543
No 125
>PRK06850 hypothetical protein; Provisional
Probab=96.60 E-value=0.04 Score=53.40 Aligned_cols=133 Identities=19% Similarity=0.151 Sum_probs=66.5
Q ss_pred HHHHHHHHHHh-hCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCcc--------HHHHHHH
Q 020993 98 AFEKAVVKRLM-TDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPD--------LKAAREV 166 (319)
Q Consensus 98 ~l~~av~~rl~-~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e--------~~~A~~v 166 (319)
.+.+.+++... .+.|..|.+|||-||++++.++.+....... .....+++.++. +.+. ++ .+..+..
T Consensus 21 ~~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~-e~r~k~v~Vi~~DTgvE~-Pe~~~~v~~~l~~i~~~ 98 (507)
T PRK06850 21 ELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPP-EKRTKPVYVISSDTLVEN-PVVVDWVNKSLERINEA 98 (507)
T ss_pred HHHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcch-hccCCcEEEEECCCCCcc-HHHHHHHHHHHHHHHHH
Confidence 33455555443 4678999999999999999888776432100 000012333332 2222 22 1234455
Q ss_pred HHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcC-ccCchH------HH-HHHHHHHHhcCCeEEEeccCcccc
Q 020993 167 ADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVT-TIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 167 a~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~------~~-~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
|+..|++.+...+.+..-...+..++. -..|.+. ..+.+. |+ -++.+..++.|-.++++|.=.||=
T Consensus 99 a~~~glpi~~~~v~P~~~~sFwv~liG-rG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES 172 (507)
T PRK06850 99 AKKQGLPITPHKLTPKINDTFWVNLIG-KGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAES 172 (507)
T ss_pred HHHcCCceEEEeeCCCcchhHHHHHhc-CCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeecccc
Confidence 778888877655554311112222221 1122111 111111 11 123333345566788999877763
No 126
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=96.52 E-value=0.023 Score=54.26 Aligned_cols=129 Identities=21% Similarity=0.209 Sum_probs=64.3
Q ss_pred HHHHHHH-hhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCcc--------HHHHHHHHHH
Q 020993 101 KAVVKRL-MTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPD--------LKAAREVADY 169 (319)
Q Consensus 101 ~av~~rl-~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e--------~~~A~~va~~ 169 (319)
+.+++.. ..+.|..|.+|||-||++++.++-++...... ......++.++. +.+. ++ .+..+..|+.
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~-e~~~k~v~VI~~DTgvE~-Pe~~~~v~~~l~~i~~~a~~ 80 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPA-EQRTKKIHVISTDTLVEN-PIVAAWVNASLERMQEAAQD 80 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccc-cccCcceEEEECcCCCcc-HHHHHHHHHHHHHHHHHHHH
Confidence 3444433 35678999999999999999888776432100 000012333332 2222 22 1234556778
Q ss_pred hCCcceEEEeChhHHHHHHHHHHHhhccCCcC-ccC-ch-----HHH-HHHHHHHHhcCCeEEEeccCccc
Q 020993 170 LGTRHHEFHFTVQEGIDALEEVIYHIETYDVT-TIR-AS-----TPM-FLMSRKIKSLGVKMVISGEGSDE 232 (319)
Q Consensus 170 lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~-~~-----~~~-~~l~~~a~~~g~~v~ltG~G~De 232 (319)
.|++.....+.+..-...+..++- ...|.+. ..+ +. .|+ -++.+.+++.|..++++|.=.||
T Consensus 81 ~~lpi~~~~v~P~~~~~Fwv~liG-rG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~E 150 (447)
T TIGR03183 81 QGLPIEPHRLTPEIKDTFWVNLIG-KGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAE 150 (447)
T ss_pred cCCCeEEEecCCCcchHHHHHHhc-CCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhh
Confidence 888876655554311122222221 1222111 111 11 111 23333444567788999988776
No 127
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=96.49 E-value=0.021 Score=49.76 Aligned_cols=65 Identities=6% Similarity=-0.102 Sum_probs=44.6
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeCh
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTV 181 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~ 181 (319)
..++++..|||.||++++.++.+.... ..++.....|..-..-.+++.++++++|+..+.+...+
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~~-------~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~ 89 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISEP-------MIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDG 89 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhCC-------CCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCC
Confidence 346899999999999999999987621 02333333444433345789999999996655554444
No 128
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.47 E-value=0.037 Score=49.32 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=64.0
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceee--ccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHH
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFC--IGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDA 187 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~ 187 (319)
+.++.+..|||.||++++.++.+... ++..+. .++.-..-.+++.++++++|++..+...... ..+.
T Consensus 39 ~~~~~~~~S~Gkds~V~l~L~~k~~~----------~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~~~~~-~~~~ 107 (261)
T COG0175 39 SNPVVVSFSGGKDSTVLLHLAAKAFP----------DFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRPDDE-VAEG 107 (261)
T ss_pred CCCeEEEecCchhHHHHHHHHHHhcC----------CCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEecCccc-hhhh
Confidence 45679999999999999999998874 234443 3443333468899999999977766654432 2222
Q ss_pred HHHHHHhhccCCcCcc-CchHHH-HHHHHHHHhcCCeEEEeccCcccccc
Q 020993 188 LEEVIYHIETYDVTTI-RASTPM-FLMSRKIKSLGVKMVISGEGSDEIFG 235 (319)
Q Consensus 188 ~~~~~~~~e~~~~~~~-~~~~~~-~~l~~~a~~~g~~v~ltG~G~Delf~ 235 (319)
.........|+ ..- .+.+.. --+.+..++.+....++|.=-||=+.
T Consensus 108 -~~~~~~~~~~~-~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~~ 155 (261)
T COG0175 108 -EKYGGKLWEPS-VERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESPT 155 (261)
T ss_pred -hhcccCCCCCC-cchhhhhhHhhhhHHHHHhhcCCceEEEecccccccc
Confidence 11111111222 000 011110 11233344444467888877777554
No 129
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.024 Score=53.02 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=52.1
Q ss_pred HHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCccHHHHHHHHHHhCCcceEEEeC
Q 020993 103 VVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFT 180 (319)
Q Consensus 103 v~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~va~~lg~~~~~~~~~ 180 (319)
+++++. +..+.+++|||+|||+.++++.++... .++++..+ |+-.-.|.+.-++....+|++.+.++.+
T Consensus 224 i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~--------~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as 294 (552)
T KOG1622|consen 224 IRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGP--------DRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDAS 294 (552)
T ss_pred HHHHhc-ccceEEEecCCchHHHHHHHHHHhhCC--------CceEEEEecccchhhhHHHHHHHHHHHcCCceEEeech
Confidence 334443 677889999999999999999998753 35666654 4444567777777777799999988765
Q ss_pred h
Q 020993 181 V 181 (319)
Q Consensus 181 ~ 181 (319)
.
T Consensus 295 ~ 295 (552)
T KOG1622|consen 295 E 295 (552)
T ss_pred H
Confidence 3
No 130
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=96.09 E-value=0.038 Score=50.02 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=37.4
Q ss_pred hhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCC--ccHHHHHHHHH
Q 020993 108 MTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS--PDLKAAREVAD 168 (319)
Q Consensus 108 ~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~e~~~A~~va~ 168 (319)
..-..|+|.+|||.||++++.++.+...+.. -.++.-+-+.+++. --.++.+++-.
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~-----~~~i~VlfiD~E~QYs~TidyV~em~~ 82 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENG-----RDKISVLFIDWEAQYSCTIDYVQEMRE 82 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHHHHhC-----CCceEEEEEcchhhhhhHHHHHHHHHh
Confidence 4556799999999999999999988765431 02566666666542 23344444444
No 131
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=96.03 E-value=0.041 Score=45.08 Aligned_cols=62 Identities=24% Similarity=0.455 Sum_probs=45.0
Q ss_pred ceeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhc--------------------------cccc
Q 020993 3 DGMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDD--------------------------CERF 56 (319)
Q Consensus 3 ~G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~--------------------------~~~i 56 (319)
+|.|+|.|=|+ +++|.+.+|+-|.-|+|.-. ++..|+...+|-+-.. .+++
T Consensus 99 EGdfcffiE~k-ng~L~l~Tds~G~~pv~lV~--~~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na 175 (201)
T PF09147_consen 99 EGDFCFFIEDK-NGELTLITDSRGFNPVYLVQ--SKFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNA 175 (201)
T ss_dssp -SSEEEEEEET-TSEEEEEE-SSSSS-EEEEE--SSSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTE
T ss_pred cCceEEEEecC-CCcEEEEecCCCCceEEEEe--cCceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccc
Confidence 69999999665 79999999999999999976 3467888887765431 2588
Q ss_pred eeeCCCcEEEe
Q 020993 57 ISFPPGHIYSS 67 (319)
Q Consensus 57 ~~l~pG~~l~~ 67 (319)
.++.||++-.+
T Consensus 176 ~RlkPGsin~l 186 (201)
T PF09147_consen 176 QRLKPGSINVL 186 (201)
T ss_dssp EEE-SSEEEEE
T ss_pred eecCCCceEEE
Confidence 99999998544
No 132
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=95.47 E-value=0.2 Score=42.98 Aligned_cols=60 Identities=23% Similarity=0.208 Sum_probs=42.1
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcce-eeccCCC-------CccHHHHHHHHHHhCCcceEEEeCh
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHS-FCIGLEG-------SPDLKAAREVADYLGTRHHEFHFTV 181 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~-~t~~~~~-------~~e~~~A~~va~~lg~~~~~~~~~~ 181 (319)
++.+++|||.||..-+..+-+.+ ..+.+ +++..++ ....+.+...|+.+|+++.....+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G----------~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEG----------HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcC----------CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc
Confidence 46789999999987777766553 34443 3332222 2467889999999999988877664
No 133
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=95.19 E-value=0.068 Score=46.22 Aligned_cols=69 Identities=23% Similarity=0.237 Sum_probs=38.5
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcce-eeccCC-------CCccHHHHHHHHHHhCCcceEEEeC--h
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHS-FCIGLE-------GSPDLKAAREVADYLGTRHHEFHFT--V 181 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~-~t~~~~-------~~~e~~~A~~va~~lg~~~~~~~~~--~ 181 (319)
++++++|||-||++-+..+.+. . ++.+ +|+-.+ +....+..+..|+.+|+++..+.++ .
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~ 70 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-H----------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDE 70 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT------------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---C
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-C----------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCcc
Confidence 3678999999999887766654 2 2222 222111 1223556888899999999988876 3
Q ss_pred hHHHHHHHHH
Q 020993 182 QEGIDALEEV 191 (319)
Q Consensus 182 ~~~~~~~~~~ 191 (319)
++..+.+.+.
T Consensus 71 ~~~~~~l~~~ 80 (218)
T PF01902_consen 71 EDYVEDLKEA 80 (218)
T ss_dssp CCHHHHHHHH
T ss_pred chhhHHHHHH
Confidence 3334444433
No 134
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=94.90 E-value=0.1 Score=51.26 Aligned_cols=67 Identities=28% Similarity=0.512 Sum_probs=56.6
Q ss_pred CcceeEEEEEEECCC-CEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccceeeCCCcEEEecCCe
Q 020993 1 MLDGMFSFVLLDTRD-KSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERFISFPPGHIYSSKQGG 71 (319)
Q Consensus 1 ~l~G~fa~~i~D~~~-~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i~~l~pG~~l~~~~~~ 71 (319)
+|.|.||+++.|... ++++++|- -.||..... ++..+++|++-+++...+.+..|..|.+..+..+.
T Consensus 150 ~l~Gsyal~~~~~~~p~~i~~ar~---~sPL~iG~g-~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~ 217 (597)
T COG0449 150 RLEGSYALLCTHSDFPDELVAARK---GSPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDG 217 (597)
T ss_pred HhcceeEEEEEecCCCCeEEEEcC---CCCeEEEec-CCcceEecChhhhhhhhceEEEeCCCCEEEEECCc
Confidence 589999999999876 78999986 379999985 67788999999999998889999999887665443
No 135
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=94.64 E-value=0.16 Score=44.10 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=38.7
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC-------CCccHHHHHHHHHHhCCcceEEEe
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-------GSPDLKAAREVADYLGTRHHEFHF 179 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-------~~~e~~~A~~va~~lg~~~~~~~~ 179 (319)
+.+++|||-||+.-+..+.+. .+ .+..+|+... +....+..+..|+.+|+++..+..
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~-~~---------v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKE-HE---------VISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHh-Ce---------eEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 568999999999888777665 32 2222232111 123567889999999999877554
No 136
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=93.17 E-value=0.78 Score=43.85 Aligned_cols=70 Identities=29% Similarity=0.392 Sum_probs=41.4
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhh--------hh-hh------------------hcCCCcceeeccCCCCc-c-HHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADS--------EA-AC------------------QWGSQLHSFCIGLEGSP-D-LKA 162 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~--------~~-~~------------------~~~~~~~~~t~~~~~~~-e-~~~ 162 (319)
-.-+.||||+||+++|++....-... ++ .. -.+.-+.|.-++.+++. | ..-
T Consensus 351 GfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~r 430 (706)
T KOG2303|consen 351 GFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRR 430 (706)
T ss_pred ceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHH
Confidence 45689999999999988654322110 00 00 00011112223334432 3 356
Q ss_pred HHHHHHHhCCcceEEEeCh
Q 020993 163 AREVADYLGTRHHEFHFTV 181 (319)
Q Consensus 163 A~~va~~lg~~~~~~~~~~ 181 (319)
|+++|+.+|.-|..+.++.
T Consensus 431 ak~La~~igs~H~~i~iD~ 449 (706)
T KOG2303|consen 431 AKELANQIGSYHIDLNIDT 449 (706)
T ss_pred HHHHHHhhcceeeeeeehH
Confidence 9999999999999998875
No 137
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=90.71 E-value=0.19 Score=49.62 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=39.0
Q ss_pred hhhhccCceeccccCCHHHHHHHhcCCccccccCCCcchhHHHhhhc
Q 020993 270 KSTSAWGVEARVPFLDKEFINTAMSIDPEWKMVWEFSYIVLHFILWP 316 (319)
Q Consensus 270 r~~~~~gve~r~Pfld~~lve~~~~lp~~~k~~~~~~~~~~r~~~~~ 316 (319)
+ +|+.++|.|+||+|. ++++.+||++.|...+.++.++|...++
T Consensus 419 ~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~~~~~gk~~lr~~~~~ 462 (542)
T COG0367 419 R-SMAKKLERRVPFSDG--VELPEEIPWREKIAFGYGKGILRIAYEK 462 (542)
T ss_pred h-hhhhhhheecccccc--hhhHhhCChhhhhhcCCcchhhHhhhhc
Confidence 7 999999999999999 9999999999999988777777766553
No 138
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=87.84 E-value=2 Score=39.00 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=63.1
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCC-ccH-HHHHHHHHHhCCcceEEEeChhHHH
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGS-PDL-KAAREVADYLGTRHHEFHFTVQEGI 185 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~-~e~-~~A~~va~~lg~~~~~~~~~~~~~~ 185 (319)
...+++.-|||-||+.++..+..+..... -|.++...++ +..+. ++. ...++....+|+|..++.. .++.
T Consensus 51 ge~v~igasGgkdstvlA~v~~~Ln~r~~----~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~--~dl~ 124 (347)
T KOG2840|consen 51 GERVAIGASGGKDSTVLAYVLDALNERHD----YGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSY--KDLY 124 (347)
T ss_pred CCccccccccchhHHHHHHHHHHhhhhcC----CCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecH--HHHh
Confidence 34589999999999999988876643210 0223444443 22222 233 3445567789999998653 4443
Q ss_pred H-----HHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCcccc
Q 020993 186 D-----ALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 186 ~-----~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Del 233 (319)
. .+...+. .+.-+..++....-.-.+-+.+...|+.-+.||+.+|..
T Consensus 125 ~~~tmd~i~~~i~-~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~ 176 (347)
T KOG2840|consen 125 GEWTMDEIVSEIG-QEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDW 176 (347)
T ss_pred ccchHHHHHHHHh-hhhhcCceeecHHHHHHHHhhccccchhhhhhcccchHH
Confidence 3 2222211 111111111111112234444555667778899999975
No 139
>PLN02309 5'-adenylylsulfate reductase
Probab=82.67 E-value=7.7 Score=37.50 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=39.6
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeC
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT 180 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~ 180 (319)
.++++..|||-|| +++.++.+...+ .++.....|+.-..-.+++.++++++|++.+.+..+
T Consensus 111 ~~ia~~~SG~ed~-vll~l~~~~~~~--------ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~P~ 171 (457)
T PLN02309 111 NDIAIAFSGAEDV-ALIEYAHLTGRP--------FRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFPD 171 (457)
T ss_pred CCEEEEecchHHH-HHHHHHHHhCCC--------CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCC
Confidence 4688999977666 455566654321 234444445443345688999999999988776544
No 140
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=81.93 E-value=3.5 Score=34.79 Aligned_cols=51 Identities=10% Similarity=0.140 Sum_probs=36.7
Q ss_pred cccHHHHHHHHHHHhhhhhhhhhcCCCcceeec--cCCCCccHHHHHHHHHHhCCcceEEEeC
Q 020993 120 GLDSSLVAAVASRYLADSEAACQWGSQLHSFCI--GLEGSPDLKAAREVADYLGTRHHEFHFT 180 (319)
Q Consensus 120 GlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~e~~~A~~va~~lg~~~~~~~~~ 180 (319)
|+||.+++.++.+... ++..+.+ |+.-..-.+++.++++++|++.+.+..+
T Consensus 2 ~~~s~Vll~L~~~~~~----------~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~ 54 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRP----------DVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPP 54 (191)
T ss_pred ChHHHHHHHHHHhcCC----------CCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 7899999999998763 3444444 3333234578999999999988777543
No 141
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=77.36 E-value=14 Score=35.84 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=40.3
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeC
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT 180 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~ 180 (319)
.++++..|||-||. ++.++.+.... .++.....|+.-..-.+++.++++++|++.+.+...
T Consensus 116 ~~iavasSG~edsv-Llhl~~~~~~~--------ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~p~ 176 (463)
T TIGR00424 116 NDIAIAFSGAEDVA-LIEYAHLTGRP--------FRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMFPD 176 (463)
T ss_pred CCEEEEeccHHHHH-HHHHHHHhCCC--------CcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCC
Confidence 36899999887765 56666665421 234444445544345688999999999988766443
No 142
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=72.70 E-value=8.8 Score=34.38 Aligned_cols=61 Identities=30% Similarity=0.400 Sum_probs=30.5
Q ss_pred eeEEEEEEECCCCEEEEEecCCCCcceEEE------------------------EecCCeEEEeecchhhhhccccceee
Q 020993 4 GMFSFVLLDTRDKSFIAARDAIGVTPLYMG------------------------WGLDGSIWFASEMKALSDDCERFISF 59 (319)
Q Consensus 4 G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~------------------------~~~~~~~~fsSe~~~l~~~~~~i~~l 59 (319)
|.+.|++.|. ++|++.|+. +|||. ...+..+++|||.-. . -+....+
T Consensus 170 ~~~N~~lsDG--~~l~a~~~~----~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSePLt--~-~e~W~~v 240 (271)
T PF13230_consen 170 GSLNFLLSDG--ERLFAHRYT----SLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEPLT--D-DEDWEPV 240 (271)
T ss_dssp EEEEEEEE-S--S-EEEEEEE----SSS----------------------EEEEETTTTEEEEESS-------SS--EE-
T ss_pred eeEEEEEECC--ceEEEEEcC----CeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEeccCC--C-CCCeEEc
Confidence 7788999987 689999982 23332 112456778888433 2 2468999
Q ss_pred CCCcEEEecCCeEE
Q 020993 60 PPGHIYSSKQGGLR 73 (319)
Q Consensus 60 ~pG~~l~~~~~~~~ 73 (319)
|+|+.+.+..|++.
T Consensus 241 p~g~~l~~~~G~v~ 254 (271)
T PF13230_consen 241 PPGSLLVFRDGEVV 254 (271)
T ss_dssp -SSEEEE-------
T ss_pred CCCcEEEEeccccc
Confidence 99999999887654
No 143
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=68.30 E-value=96 Score=29.51 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEE
Q 020993 98 AFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEF 177 (319)
Q Consensus 98 ~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~ 177 (319)
.+++.+..- ...+-++++|-|+=+...+. ..+.+. |..+++.. +.-..-..+.+++..++|+.-..+
T Consensus 81 ~le~~iaal--~ga~~~l~fsSGmaA~~~al--~~L~~~-------g~~iV~~~--~~Y~gT~~~l~~~~~~~gie~~~v 147 (409)
T KOG0053|consen 81 VLESGIAAL--EGAAHALLFSSGMAAITVAL--LHLLPA-------GDHIVATG--DVYGGTLRILRKFLPKFGGEGDFV 147 (409)
T ss_pred HHHHHHHHH--hCCceEEEecccHHHHHHHH--HHhcCC-------CCcEEEeC--CCcccHHHHHHHHHHHhCceeeee
Confidence 344444442 23455899999995444332 222222 23445444 333456778899999999988887
Q ss_pred EeChh-HHHHHHHHHH--HhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccccCc
Q 020993 178 HFTVQ-EGIDALEEVI--YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 237 (319)
Q Consensus 178 ~~~~~-~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf~Gy 237 (319)
+++.- ++.+.+.+-+ -++|.|.++.... .=.-.+.+.|++.|+-|++. +-|++.
T Consensus 148 d~~~~~~~~~~i~~~t~~V~~ESPsNPll~v-~DI~~l~~la~~~g~~vvVD-----nTf~~p 204 (409)
T KOG0053|consen 148 DVDDLKKILKAIKENTKAVFLESPSNPLLKV-PDIEKLARLAHKYGFLVVVD-----NTFGSP 204 (409)
T ss_pred chhhHHHHHHhhccCceEEEEECCCCCcccc-ccHHHHHHHHhhCCCEEEEe-----CCcCcc
Confidence 76532 2333333211 1257776543321 11234567788889888874 446654
No 144
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=62.09 E-value=47 Score=27.66 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=52.9
Q ss_pred CcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCcc------HHHHHHHHHHhCCcceEEEeChhHHHHHHHHHH
Q 020993 119 GGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPD------LKAAREVADYLGTRHHEFHFTVQEGIDALEEVI 192 (319)
Q Consensus 119 GGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e------~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~ 192 (319)
=|-||+...-.+.+.+ .+++.|-....-.+. .+..+++|+.+|++..+-+.+++++++.+.
T Consensus 7 CaPCs~~~~~~L~~~g----------~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~--- 73 (176)
T PF02677_consen 7 CAPCSTYPLERLREEG----------FDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVK--- 73 (176)
T ss_pred CccccHHHHHHHHHCC----------CCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHh---
Confidence 4778888887777653 355655443222232 344667899999988776666555544332
Q ss_pred Hhhc-cCCcCccCch----HHHHHHHHHHHhcCCeEEEec
Q 020993 193 YHIE-TYDVTTIRAS----TPMFLMSRKIKSLGVKMVISG 227 (319)
Q Consensus 193 ~~~e-~~~~~~~~~~----~~~~~l~~~a~~~g~~v~ltG 227 (319)
..+ .|.. ..++. +-+-..++.|++.|.+..=|-
T Consensus 74 -~~e~epE~-g~RC~~Cy~~RL~~tA~~A~e~gfd~FtTT 111 (176)
T PF02677_consen 74 -GLEDEPEG-GKRCRVCYDLRLEKTAQYAKELGFDYFTTT 111 (176)
T ss_pred -hCccCCcc-CchhHHHHHHHHHHHHHHHHHcCCCEEEcc
Confidence 222 2321 12222 222345677888887755543
No 145
>PRK05967 cystathionine beta-lyase; Provisional
Probab=56.70 E-value=1.1e+02 Score=29.08 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~ 190 (319)
.+-++.+|.|+ +.+.+++.....+ |..+.+-.-.+. .-....+.+++.+|++...++.+.. +.+++
T Consensus 79 ~~~~v~~sSG~--aAi~~~l~all~~-------GD~Vlv~~~~Y~--~~~~l~~~~l~~~Gi~v~~vd~~~~---e~l~~ 144 (395)
T PRK05967 79 SAGTILVPSGL--AAVTVPFLGFLSP-------GDHALIVDSVYY--PTRHFCDTMLKRLGVEVEYYDPEIG---AGIAK 144 (395)
T ss_pred CCCEEEECcHH--HHHHHHHHHhcCC-------CCEEEEccCCcH--HHHHHHHHHHHhcCeEEEEeCCCCH---HHHHH
Confidence 34568888886 4444333333332 234444332222 2334566788999998888765432 22333
Q ss_pred HHH------hhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 191 VIY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 191 ~~~------~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
.+. .++.|.++... ....-.+++.|++.|+-+++..-
T Consensus 145 al~~~TklV~lesPsNP~l~-v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 145 LMRPNTKVVHTEAPGSNTFE-MQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred hcCcCceEEEEECCCCCCCc-HHHHHHHHHHHHHhCCEEEEECC
Confidence 221 23556543322 23344577888888888887665
No 146
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=55.44 E-value=6.1 Score=17.75 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=10.2
Q ss_pred hccCceeccccCC
Q 020993 273 SAWGVEARVPFLD 285 (319)
Q Consensus 273 ~~~gve~r~Pfld 285 (319)
|.|+...|+|-|+
T Consensus 1 mthsmrlrfptln 13 (14)
T PF08057_consen 1 MTHSMRLRFPTLN 13 (14)
T ss_pred CccceeeeccccC
Confidence 5678888998775
No 147
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=54.59 E-value=1.5e+02 Score=27.86 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=20.3
Q ss_pred HHhcCCeEEEeccCcc-ccccCcccc
Q 020993 216 IKSLGVKMVISGEGSD-EIFGGYLYF 240 (319)
Q Consensus 216 a~~~g~~v~ltG~G~D-elf~Gy~~~ 240 (319)
|-+.|+++|++|=-+| .+|.|...|
T Consensus 156 AL~~GADIVI~GR~~D~Al~~a~~~~ 181 (362)
T PF07287_consen 156 ALEAGADIVITGRVADPALFAAPAIH 181 (362)
T ss_pred HHHcCCCEEEeCcccchHHHHhHHHH
Confidence 4457999999999999 688888653
No 148
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=52.44 E-value=14 Score=31.97 Aligned_cols=19 Identities=42% Similarity=0.419 Sum_probs=14.8
Q ss_pred hCCCeEEeecCcccHHHHH
Q 020993 109 TDVPFGVLLSGGLDSSLVA 127 (319)
Q Consensus 109 ~~~~v~v~LSGGlDSs~ia 127 (319)
..+-.|++||||+||..=.
T Consensus 53 kkGy~g~llSGGm~srg~V 71 (275)
T COG1856 53 KKGYEGCLLSGGMDSRGKV 71 (275)
T ss_pred hcCceeEEEeCCcCCCCCc
Confidence 3455799999999998543
No 149
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=51.47 E-value=69 Score=30.29 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=55.2
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeCh-hHHHHHHH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTV-QEGIDALE 189 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~-~~~~~~~~ 189 (319)
..-++.+|.|+ ++|.+.+...... |..+......|. .-....+.....+|++...++.+. +++.+.+.
T Consensus 70 g~~a~~~~SGm--aAi~~~l~~ll~~-------Gd~iv~~~~~Y~--~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~ 138 (386)
T PF01053_consen 70 GEDALLFSSGM--AAISAALLALLKP-------GDHIVASDDLYG--GTYRLLEELLPRFGVEVTFVDPTDLEALEAALR 138 (386)
T ss_dssp -SEEEEESSHH--HHHHHHHHHHS-T-------TBEEEEESSSSH--HHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHC
T ss_pred ccceeeccchH--HHHHHHHHhhccc-------CCceEecCCccC--cchhhhhhhhcccCcEEEEeCchhHHHHHhhcc
Confidence 35678899998 4443333333322 234444332222 234556677888999888876543 22222222
Q ss_pred HHH--HhhccCCcCccCchHHHHHHHHHHHhcC-CeEEEecc
Q 020993 190 EVI--YHIETYDVTTIRASTPMFLMSRKIKSLG-VKMVISGE 228 (319)
Q Consensus 190 ~~~--~~~e~~~~~~~~~~~~~~~l~~~a~~~g-~~v~ltG~ 228 (319)
+-. -.+|.|.++.+.. .-.-.+++.|++.| +.+++..-
T Consensus 139 ~~t~~v~~EspsNP~l~v-~Dl~~i~~~a~~~g~~~~vVDnT 179 (386)
T PF01053_consen 139 PNTKLVFLESPSNPTLEV-PDLEAIAKLAKEHGDILVVVDNT 179 (386)
T ss_dssp TTEEEEEEESSBTTTTB----HHHHHHHHHHTTT-EEEEECT
T ss_pred ccceEEEEEcCCCccccc-ccHHHHHHHHHHhCCceEEeecc
Confidence 211 1357776554331 22345677888888 88887654
No 150
>PRK05968 hypothetical protein; Provisional
Probab=50.73 E-value=1.7e+02 Score=27.53 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+.+.... +-++.+++|. +.+.+++.. ...+ |..+.+....+. .-.......+...|++...++
T Consensus 68 le~~lA~l~g~--~~av~~~sG~-~Ai~~al~a-l~~~-------Gd~Vl~~~~~y~--~t~~~~~~~~~~~G~~v~~vd 134 (389)
T PRK05968 68 FEEMLAKLEGA--EDARGFASGM-AAISSTVLS-FVEP-------GDRIVAVRHVYP--DAFRLFETILKRMGVEVDYVD 134 (389)
T ss_pred HHHHHHHHhCC--CcEEEECCHH-HHHHHHHHH-HhCC-------CCEEEEeCCCch--HHHHHHHHHHHHcCceEEEeC
Confidence 34444444332 3467788897 333333332 2222 234444332221 112234456778898877776
Q ss_pred eCh-hHHHHHHHH--HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCcc
Q 020993 179 FTV-QEGIDALEE--VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSD 231 (319)
Q Consensus 179 ~~~-~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~D 231 (319)
... +++.+.+++ ++ ..+.|..+... ...+-.+++.+++.|+.+++.+--+.
T Consensus 135 ~~d~~~l~~~i~~tklV-~ie~pt~~~~~-~~dl~~i~~la~~~gi~vivD~a~a~ 188 (389)
T PRK05968 135 GRDEEAVAKALPGAKLL-YLESPTSWVFE-LQDVAALAALAKRHGVVTMIDNSWAS 188 (389)
T ss_pred CCCHHHHHHhcccCCEE-EEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 542 222222211 11 12334322221 12334567778888998888875433
No 151
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=48.49 E-value=51 Score=26.76 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=38.9
Q ss_pred ccHHHHH---HHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCccccc
Q 020993 158 PDLKAAR---EVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 234 (319)
Q Consensus 158 ~e~~~A~---~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~Delf 234 (319)
.|++..+ .+.+.+|++++..-++. ..+|. -++-.++.+.+.|++|++.|-|+-.-+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~VvSA-------------HRTPe--------~m~~ya~~a~~~g~~viIAgAGgAAHL 71 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVRVVSA-------------HRTPE--------KMFEYAEEAEERGVKVIIAGAGGAAHL 71 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEEec-------------cCCHH--------HHHHHHHHHHHCCCeEEEecCcchhhc
Confidence 4655544 55567788777655442 12232 133446778889999999999998776
Q ss_pred cCcc
Q 020993 235 GGYL 238 (319)
Q Consensus 235 ~Gy~ 238 (319)
-|.-
T Consensus 72 PGmv 75 (162)
T COG0041 72 PGMV 75 (162)
T ss_pred chhh
Confidence 7763
No 152
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=46.22 E-value=1.1e+02 Score=23.97 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhh--CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCC-ccHHHHHHHHHHh
Q 020993 94 VLRKAFEKAVVKRLMT--DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGS-PDLKAAREVADYL 170 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~--~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~e~~~A~~va~~l 170 (319)
.+.+.+..+.+.--.. .....+.+|.|-|+......+..... ..+..|++++... ......+++|+..
T Consensus 81 ~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~~~~~~~~~~~~---------~~i~i~~v~~~~~~~~~~~l~~la~~t 151 (172)
T PF13519_consen 81 NLYDALQEAAKMLASSDNRRRAIVLITDGEDNSSDIEAAKALKQ---------QGITIYTVGIGSDSDANEFLQRLAEAT 151 (172)
T ss_dssp -HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHCHHHHHHHHHHC---------TTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCCCceEEEEecCCCCCcchhHHHHHHHH---------cCCeEEEEEECCCccHHHHHHHHHHhc
Confidence 3455555555432222 34577899999987554454444332 3455666655432 2346788899988
Q ss_pred CCcceEEEeChhHHHHHHH
Q 020993 171 GTRHHEFHFTVQEGIDALE 189 (319)
Q Consensus 171 g~~~~~~~~~~~~~~~~~~ 189 (319)
|-....+.-+.+++.+.+.
T Consensus 152 gG~~~~~~~~~~~l~~~~~ 170 (172)
T PF13519_consen 152 GGRYFHVDNDPEDLDDAFQ 170 (172)
T ss_dssp EEEEEEE-SSSHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHh
Confidence 8765555334455444443
No 153
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=45.20 E-value=1e+02 Score=29.68 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=49.2
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE-e-ChhHHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH-F-TVQEGIDALE 189 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~-~-~~~~~~~~~~ 189 (319)
+-++.++.|. +++.+++..- ... |..+.+-...+.. -.....+..+.+|++...+. . +.+++.+.+.
T Consensus 85 ~~~v~fsSG~-~Ai~~al~~l-l~~-------Gd~VI~~~~~y~~--t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~ 153 (437)
T PRK05613 85 VHAVAFASGQ-AAETAAILNL-AGA-------GDHIVTSPRLYGG--TETLFLVTLNRLGIEVTFVENPDDPESWQAAVQ 153 (437)
T ss_pred CeEEEeCCHH-HHHHHHHHHh-cCC-------CCEEEECCCccHH--HHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCC
Confidence 5688999999 5555544432 221 2333332222211 12233456677888877765 1 1222222221
Q ss_pred HHHH--hhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 190 EVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 190 ~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
+-.. ..+.+.++.. ....+-.+++.+++.|+.+++.+-
T Consensus 154 ~~tk~V~~e~~~Np~~-~v~di~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 154 PNTKAFFGETFANPQA-DVLDIPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred ccCeEEEEECCCCCCC-cccCHHHHHHHHHHcCCeEEEECC
Confidence 1000 1233322111 012334566777778888777654
No 154
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=43.78 E-value=1.6e+02 Score=28.03 Aligned_cols=106 Identities=13% Similarity=0.085 Sum_probs=56.8
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChh-HHHHHH
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQ-EGIDAL 188 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~-~~~~~~ 188 (319)
...-++++|.|+=....+ ++ ..... |..+..-.-.| ..-.....++.+++|++...+..... +..+.+
T Consensus 77 g~~~~~afsSGmaAI~~~-~l-~ll~~-------GD~vl~~~~~Y--G~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~ 145 (396)
T COG0626 77 GGEDAFAFSSGMAAISTA-LL-ALLKA-------GDHVLLPDDLY--GGTYRLFEKILQKFGVEVTFVDPGDDEALEAAI 145 (396)
T ss_pred CCCcEEEecCcHHHHHHH-HH-HhcCC-------CCEEEecCCcc--chHHHHHHHHHHhcCeEEEEECCCChHHHHHHh
Confidence 455689999999444332 22 22221 23333322112 23456788888889998887665433 333333
Q ss_pred HH--H-HHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEec
Q 020993 189 EE--V-IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (319)
Q Consensus 189 ~~--~-~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG 227 (319)
.+ . +-.+|+|.++.+... -.-.+++.|++.|+.+++..
T Consensus 146 ~~~~tk~v~lEtPsNP~l~v~-DI~~i~~~A~~~g~~vvVDN 186 (396)
T COG0626 146 KEPNTKLVFLETPSNPLLEVP-DIPAIARLAKAYGALVVVDN 186 (396)
T ss_pred cccCceEEEEeCCCCcccccc-cHHHHHHHHHhcCCEEEEEC
Confidence 21 1 113578865544311 12245677888887777753
No 155
>PRK07582 cystathionine gamma-lyase; Validated
Probab=42.42 E-value=86 Score=29.23 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=51.8
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHH--
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE-- 190 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~-- 190 (319)
-.+.+++|.+ .+.+++.+ .... |..+.+..-.+. .-...++...+.+|++...+..+... ....++
T Consensus 67 ~~v~~~sG~~-Ai~~~l~a-ll~~-------Gd~Vl~~~~~y~--~~~~~~~~~l~~~G~~v~~v~~~~~~-~~~~~~t~ 134 (366)
T PRK07582 67 EALVFPSGMA-AITAVLRA-LLRP-------GDTVVVPADGYY--QVRALAREYLAPLGVTVREAPTAGMA-EAALAGAD 134 (366)
T ss_pred CEEEECCHHH-HHHHHHHH-hcCC-------CCEEEEeCCCcH--hHHHHHHHHHhcCeEEEEEECCCChH-HHhccCce
Confidence 4688899985 33333322 3322 234444322221 22344555667789887777665321 111111
Q ss_pred HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 191 VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 191 ~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
++ ..+.|.+++... ...-.+.+.+++.|+.+++.+-
T Consensus 135 lV-~le~p~NPtg~v-~di~~I~~~a~~~g~~lvVD~t 170 (366)
T PRK07582 135 LV-LAETPSNPGLDV-CDLAALAAAAHAAGALLVVDNT 170 (366)
T ss_pred EE-EEECCCCCCCCc-cCHHHHHHHHHHcCCEEEEECC
Confidence 12 235665443321 1234456777778888888774
No 156
>PLN02360 probable 6-phosphogluconolactonase
Probab=42.37 E-value=28 Score=31.07 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=22.4
Q ss_pred CccHHHHHHHHHHHHHHHHhhCCCeEEeecCcc
Q 020993 89 PYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGL 121 (319)
Q Consensus 89 ~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGl 121 (319)
++..+.+.+.+.+.++..+.....+++.||||-
T Consensus 20 ~el~~~~a~~i~~~~~~a~~~~~~~~lalsGGS 52 (268)
T PLN02360 20 DELSTDLAEYIAELSEASVKERGVFAIALSGGS 52 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 334455666666666655556678999999994
No 157
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=39.98 E-value=1.4e+02 Score=28.15 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=29.4
Q ss_pred HHhCCcceEEEeChhHHHHHHHH----HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 168 DYLGTRHHEFHFTVQEGIDALEE----VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 168 ~~lg~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
+..|++...+..+.+++.+.+.+ +++ .+.|.+++.. ....-.+.+.+++.|+.+++..-
T Consensus 113 ~~~g~~v~~~~~d~~~l~~~i~~~~tklV~-ie~p~NPtG~-v~dl~~I~~la~~~gi~livD~t 175 (385)
T PRK08574 113 EKFGVKVVLAYPSTEDIIEAIKEGRTKLVF-IETMTNPTLK-VIDVPEVAKAAKELGAILVVDNT 175 (385)
T ss_pred hccCcEEEEECCCHHHHHHhcCccCceEEE-EECCCCCCCE-ecCHHHHHHHHHHcCCEEEEECC
Confidence 56677766655554444433322 111 2444433211 11223456677778887776544
No 158
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=39.36 E-value=11 Score=30.52 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=21.2
Q ss_pred ecCCCCcceEEEEecCCeEEEeecchhh
Q 020993 22 RDAIGVTPLYMGWGLDGSIWFASEMKAL 49 (319)
Q Consensus 22 rD~~G~kpLyy~~~~~~~~~fsSe~~~l 49 (319)
.|++|+|||.|-..+.+.-+|+.++..+
T Consensus 2 ~dk~gRr~llYLl~~~d~~~f~p~~i~~ 29 (148)
T PF08144_consen 2 NDKYGRRVLLYLLSPRDPRYFSPEIIKL 29 (148)
T ss_pred CCccCceeeeeeccCCCcccCCHHHHHH
Confidence 6999999999987656667787665443
No 159
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=39.25 E-value=34 Score=29.81 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHH
Q 020993 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASR 132 (319)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~ 132 (319)
.+.+.+.+.+.+++.+....+..+.||||--=..+...+++
T Consensus 9 ~~~~a~~i~~~i~~~i~~~~~~~lalsGGstp~~~y~~L~~ 49 (233)
T TIGR01198 9 AEALAERIATKLQTALAERGQFSLALSGGRSPIALLEALAA 49 (233)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEECCCccHHHHHHHHhh
Confidence 34455555555555555567789999999877666666554
No 160
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=38.67 E-value=2e+02 Score=26.86 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEE
Q 020993 98 AFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEF 177 (319)
Q Consensus 98 ~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~ 177 (319)
.|++.+.+.... +-++.+++|.. .+.+++. ...+ |..+.+-...+. .-....+..++.+|++...+
T Consensus 51 ~le~~la~l~g~--~~~l~~~sG~~--al~~~l~-ll~~-------Gd~Vl~~~~~y~--~~~~~~~~~~~~~G~~v~~v 116 (378)
T TIGR01329 51 ALESLLAKLDKA--DRAFAFSSGMA--ALDVITR-LLNN-------GDEIIAGDDLYG--GTDRLLTQVVPRSGVVVVHV 116 (378)
T ss_pred HHHHHHHHHhCC--CcEEEECCHHH--HHHHHHH-HhCC-------CCEEEEcCCCch--HHHHHHHHHHHHcCcEEEEe
Confidence 344444443332 45788899974 3444443 3322 233333222221 11223456678889988887
Q ss_pred EeC-hhHHHHHHHHHHH--hhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 178 HFT-VQEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 178 ~~~-~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
+.. .+++.+.+.+-.. .++.|.+++.. ....-.+.+.|++.|+.+++.+-
T Consensus 117 d~~d~~~le~~i~~~tklv~le~psnptg~-v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 117 DTTDLDKVKAALGPKTKLVLLESPTNPLQK-IVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred CCCCHHHHHHhcCcCceEEEEECCCCCCCe-eecHHHHHHHHHHcCCEEEEECC
Confidence 764 2222222211000 12344332211 11234466777888888887653
No 161
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=37.70 E-value=2.5e+02 Score=26.45 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+.+.... +.++.+++|... +..++.....+ |..+.+-...+. .-....+..+..+|.....++
T Consensus 64 le~~lA~l~g~--~~av~~~sG~~A--i~~~l~al~~~-------Gd~Vi~~~~~y~--~t~~~~~~~~~~~G~~~~~vd 130 (391)
T TIGR01328 64 LEGRIAFLEGT--EAAVATSSGMGA--IAATLLTILKA-------GDHLISDECLYG--CTFALLEHALTKFGIQVDFIN 130 (391)
T ss_pred HHHHHHHHhCC--CcEEEECCHHHH--HHHHHHHHhCC-------CCEEEEecCcch--HHHHHHHHHHhcCCeEEEEEC
Confidence 33444444332 347899999853 33222222221 233333221111 122334556677888777776
Q ss_pred eCh-hHHHHHHHHH--HHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCc
Q 020993 179 FTV-QEGIDALEEV--IYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (319)
Q Consensus 179 ~~~-~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~ 230 (319)
++. +++.+.+.+- +-..+.|.+++.. ...+-.+.+.+++.|+.+++.+--+
T Consensus 131 ~~d~e~l~~~i~~~tklV~le~p~Np~G~-v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 131 MAIPEEVKAHIKDNTKIVYFETPANPTMK-LIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CCCHHHHHHhhccCCeEEEEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEECCCc
Confidence 642 2232222110 0013445433211 1122345666777888888766544
No 162
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=37.32 E-value=85 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCeEEEeccCcc---ccccCcc
Q 020993 209 MFLMSRKIKSLGVKMVISGEGSD---EIFGGYL 238 (319)
Q Consensus 209 ~~~l~~~a~~~g~~v~ltG~G~D---elf~Gy~ 238 (319)
.+.+.+.|...|+.|+..|.--| |+|.|-.
T Consensus 99 v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~ 131 (201)
T COG1435 99 VYVLNELADRLGIPVICYGLDTDFRGEPFEGSK 131 (201)
T ss_pred HHHHHHHHhhcCCEEEEeccccccccCCCccHH
Confidence 35677777666999999998777 5555544
No 163
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=36.44 E-value=3.4e+02 Score=25.16 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+.+.... +.++.++||.. .+.+++. .... |..+..-.-.+.. -.......++.+|++...++
T Consensus 57 le~~la~l~g~--~~~~~~~sG~~--ai~~~~~-ll~~-------Gd~Vl~~~~~y~~--t~~~~~~~~~~~G~~v~~vd 122 (366)
T PRK08247 57 LEQAIADLEGG--DQGFACSSGMA--AIQLVMS-LFRS-------GDELIVSSDLYGG--TYRLFEEHWKKWNVRFVYVN 122 (366)
T ss_pred HHHHHHHHhCC--CcEEEEcCHHH--HHHHHHH-HhCC-------CCEEEEecCCcCc--HHHHHHHHhhccCceEEEEC
Confidence 44444454332 34689999964 3333333 3322 2344433322322 22234556677888877766
Q ss_pred eC-hhHHHHHHHHHHH--hhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 179 FT-VQEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 179 ~~-~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
.. .+++.+.+.+-.. ..+.|.++... ....-.+.+.+++.|+.+++..-
T Consensus 123 ~~d~~~l~~~i~~~tklv~le~P~NP~~~-~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 123 TASLKAIEQAITPNTKAIFIETPTNPLMQ-ETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred CCCHHHHHHhcccCceEEEEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEECC
Confidence 53 2222222211001 13456544322 12334566777778877776543
No 164
>PRK08114 cystathionine beta-lyase; Provisional
Probab=34.33 E-value=2e+02 Score=27.35 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=55.1
Q ss_pred CCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeCh-hHHHHHH
Q 020993 110 DVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTV-QEGIDAL 188 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~-~~~~~~~ 188 (319)
...-++.+|.|+-....+.++ .... |..+.+-...+. .-....+++++.+|++.+.++... +++.+.+
T Consensus 76 g~~~a~~~~SGmaAi~~~~~~--ll~~-------GD~Vv~~~~~Yg--~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l 144 (395)
T PRK08114 76 GGAGCALYPCGAAAVANAILA--FVEQ-------GDHVLMTGTAYE--PTQDFCSKILSKLGVTTTWFDPLIGADIAKLI 144 (395)
T ss_pred CCCeEEEEhHHHHHHHHHHHH--HcCC-------CCEEEEeCCCcH--HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhc
Confidence 355788999998655433321 2221 234443222221 233456677888999988876542 2333332
Q ss_pred HH---HHHhhccCCcCccCchHHHHHHHHHHHhc--CCeEEEecc
Q 020993 189 EE---VIYHIETYDVTTIRASTPMFLMSRKIKSL--GVKMVISGE 228 (319)
Q Consensus 189 ~~---~~~~~e~~~~~~~~~~~~~~~l~~~a~~~--g~~v~ltG~ 228 (319)
.+ ++ .+|.|.++... ....-.+++.+++. |+.+++.+-
T Consensus 145 ~~~TrlV-~~EtpsNp~~~-v~DI~~Ia~ia~~~g~g~~lvVDnT 187 (395)
T PRK08114 145 QPNTKVV-FLESPGSITME-VHDVPAIVAAVRSVNPDAVIMIDNT 187 (395)
T ss_pred CCCceEE-EEECCCCCCCE-eecHHHHHHHHHHhCCCCEEEEECC
Confidence 21 11 24555443221 12234567777776 488887765
No 165
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.07 E-value=2e+02 Score=27.53 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+..... .+.++..|+|.... .+++.. .... |..+.+....+. .-......+++.+|++...++
T Consensus 69 Le~~lA~leg--~~~al~~~sG~~Ai-~~al~~-ll~~-------GD~Vlv~~~~y~--~t~~~~~~~~~~~Gv~v~~vd 135 (431)
T PRK08248 69 FEKRIAALEG--GIGALAVSSGQAAI-TYSILN-IASA-------GDEIVSSSSLYG--GTYNLFAHTLPKLGITVKFVD 135 (431)
T ss_pred HHHHHHHHhC--CCcEEEECCHHHHH-HHHHHH-HhCC-------CCEEEEccCchh--hHHHHHHHHHHhCCEEEEEEC
Confidence 4444444432 45789999998433 333322 2221 233433322221 122344566788898877776
Q ss_pred eCh-hHHHHHHHHHHH--hhccCCcCccCchHHHHHHHHHHHhcCCeEEEec
Q 020993 179 FTV-QEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (319)
Q Consensus 179 ~~~-~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG 227 (319)
... +++.+.+.+-.. ..+.|.+++.. ....-.+.+.+++.|+.+++.+
T Consensus 136 ~~d~e~l~~ai~~~tklV~l~sp~NPtG~-v~di~~I~~la~~~gi~vIvD~ 186 (431)
T PRK08248 136 PSDPENFEAAITDKTKALFAETIGNPKGD-VLDIEAVAAIAHEHGIPLIVDN 186 (431)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEeC
Confidence 532 222222211000 12344322211 1112345666777787777654
No 166
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=34.05 E-value=3.1e+02 Score=25.43 Aligned_cols=117 Identities=12% Similarity=0.050 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+..... .+-++.+|+|. +.+..++...... |..+.+-...+. .-....+.+++..|.+...++
T Consensus 45 le~~la~l~g--~~~a~~~~sG~--~Ai~~~l~~l~~~-------gd~Vl~~~~~y~--~~~~~~~~~~~~~g~~~~~v~ 111 (369)
T cd00614 45 LEKKLAALEG--GEAALAFSSGM--AAISTVLLALLKA-------GDHVVASDDLYG--GTYRLFERLLPKLGIEVTFVD 111 (369)
T ss_pred HHHHHHHHHC--CCCEEEEcCHH--HHHHHHHHHHcCC-------CCEEEECCCCcc--hHHHHHHHHHhhcCeEEEEeC
Confidence 3344444332 23578889997 3333333223221 223333222221 122334456677888777766
Q ss_pred eCh-hHHHHHHHHHH--HhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccC
Q 020993 179 FTV-QEGIDALEEVI--YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (319)
Q Consensus 179 ~~~-~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G 229 (319)
.+. +++.+.+.+-. -..+.|.++... ....-.+.+.+++.|+.+++.+--
T Consensus 112 ~~d~~~l~~~i~~~~~~v~~e~~~np~g~-~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 112 PDDPEALEAAIKPETKLVYVESPTNPTLK-VVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECCC
Confidence 542 22222221100 012444332211 112335667778888888887653
No 167
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=34.02 E-value=90 Score=34.00 Aligned_cols=63 Identities=21% Similarity=0.158 Sum_probs=42.1
Q ss_pred eeEEEEEEECCCCEEEEEecCCCCcceEEEEecCCeEEEeecchhhhhccccc---eeeCCCcEEEec
Q 020993 4 GMFSFVLLDTRDKSFIAARDAIGVTPLYMGWGLDGSIWFASEMKALSDDCERF---ISFPPGHIYSSK 68 (319)
Q Consensus 4 G~fa~~i~D~~~~~l~l~rD~~G~kpLyy~~~~~~~~~fsSe~~~l~~~~~~i---~~l~pG~~l~~~ 68 (319)
|.=-+.+-|. +.+=..=||-|.||.-|+...++.++.|||+..+--..+.| -+|.||..+.++
T Consensus 412 GPALl~FsDG--ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 412 GPALLTFSDG--RYCGAILDRNGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred CceEEEecCC--ceeeeeeccCCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 3333444343 45666779999999977777789999999987543222222 378999887653
No 168
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=33.65 E-value=3.1e+02 Score=25.96 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+..... .+-++.+|+|. ..|..++...... |..+..-+-.|. .-....+.+++..|++...+.
T Consensus 65 Le~~lA~l~g--~~~~v~~~sG~--~Ai~~~l~all~p-------GD~Vvv~~p~Y~--~t~~~~~~~~~~~g~~v~~v~ 131 (405)
T PRK08776 65 LGEALAELEG--GAGGVITATGM--GAINLVLNALLQP-------GDTLVVPHDAYG--GSWRLFNALAKKGHFALITAD 131 (405)
T ss_pred HHHHHHHHhC--CCceEEEcCHH--HHHHHHHHHHhCC-------CCEEEEccCCch--HHHHHHHHHHHhcCcEEEEEC
Confidence 3344444332 24578999995 4444444333322 233443222221 112234455667777766665
Q ss_pred eC-hhHHHHHHHH---HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCc
Q 020993 179 FT-VQEGIDALEE---VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (319)
Q Consensus 179 ~~-~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~ 230 (319)
.. .+++.+.+.+ ++ ..+.|.+++... ...-.+.+.+++.|+.+++..--+
T Consensus 132 ~~d~~~l~~~i~~~tklV-~l~~P~NPtG~v-~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 132 LTDPRSLADALAQSPKLV-LIETPSNPLLRI-TDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCCHHHHHHhcCcCCeEE-EEECCCCCCCcc-CCHHHHHHHHHHcCCEEEEECCCc
Confidence 43 2222222211 11 224454332211 123345666777788777765533
No 169
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=31.22 E-value=3.2e+02 Score=25.66 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+......+ -++.+|||......+.. + ...+ |..+.+-...+. .-.......++.+|++...++
T Consensus 66 le~~la~l~g~~--~~v~~ssG~~Ai~~al~-a-l~~~-------Gd~Vi~~~~~y~--~t~~~~~~~~~~~G~~v~~vd 132 (390)
T PRK08133 66 FQERLAALEGAE--ACVATASGMAAILAVVM-A-LLQA-------GDHVVSSRSLFG--STVSLFEKIFARFGIETTFVD 132 (390)
T ss_pred HHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H-HhCC-------CCEEEEccCcch--hHHHHHHHHHHHcCcEEEEEC
Confidence 344444444332 36889999865443322 1 2221 233333221121 122334556778898877776
Q ss_pred eCh-hHHHHHHHHHHH--hhccCCcCccCchHHHHHHHHHHHhcCCeEEEec
Q 020993 179 FTV-QEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (319)
Q Consensus 179 ~~~-~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG 227 (319)
++. +++.+.+.+-.. ..+.|.+++.. ....-.+.+.+++.|+.+++..
T Consensus 133 ~~d~~~l~~~i~~~tklV~ie~p~NptG~-v~dl~~I~~la~~~gi~livD~ 183 (390)
T PRK08133 133 LTDLDAWRAAVRPNTKLFFLETPSNPLTE-LADIAALAEIAHAAGALLVVDN 183 (390)
T ss_pred CCCHHHHHHhcCcCCeEEEEECCCCCCCC-cCCHHHHHHHHHHcCCEEEEEC
Confidence 642 222222211000 12344432211 1123345666777888777655
No 170
>PRK07503 methionine gamma-lyase; Provisional
Probab=30.64 E-value=2.9e+02 Score=26.05 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=49.4
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeC-hhHHHHHHHH-
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT-VQEGIDALEE- 190 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~-~~~~~~~~~~- 190 (319)
-++.+|+|.+...+ ++...... |..+.+-...+ ..-.......++.+|++...++++ ++++.+.+.+
T Consensus 82 ~~i~~~sG~~Al~~--~l~~ll~~-------Gd~Viv~~~~y--~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~ 150 (403)
T PRK07503 82 AAVALASGMGAITA--TLWTLLRP-------GDEVIVDQTLY--GCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDK 150 (403)
T ss_pred cEEEEcCHHHHHHH--HHHHHcCC-------CCEEEEccCcc--chHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCcc
Confidence 46899999864322 22222222 23343322111 112223445567788887777654 2233222211
Q ss_pred --HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccC
Q 020993 191 --VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 229 (319)
Q Consensus 191 --~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G 229 (319)
+++ .+.|.+++.. ....-.+.+.+++.|+.+++.+--
T Consensus 151 tklV~-le~p~NPtG~-~~di~~I~~la~~~gi~lIvD~a~ 189 (403)
T PRK07503 151 TRMVY-FETPANPNMR-LVDIAAVAEIAHGAGAKVVVDNTY 189 (403)
T ss_pred CcEEE-EeCCCCCCCe-eeCHHHHHHHHHHcCCEEEEECCC
Confidence 111 2344433221 122345667777788888876643
No 171
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=30.53 E-value=4e+02 Score=25.22 Aligned_cols=116 Identities=15% Similarity=0.080 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+..... .+-++.+|+|+..... ++.. ...+ |..+.+-...+ ..-.......++..|.+...++
T Consensus 75 le~~lA~l~g--~~~al~~~sG~~Ai~~-~l~a-ll~~-------Gd~Vl~~~~~~--~~t~~~~~~~~~~~G~~v~~vd 141 (403)
T PRK07810 75 FEERLRLIEG--AEACFATASGMSAVFT-ALGA-LLGA-------GDRLVAARSLF--GSCFVVCNEILPRWGVETVFVD 141 (403)
T ss_pred HHHHHHHHhC--CCcEEEECChHHHHHH-HHHH-HhCC-------CCEEEEccCCc--chHHHHHHHHHHHcCcEEEEEC
Confidence 3344444432 3468999999955433 2222 2221 23333222111 1223344566778898877776
Q ss_pred eCh-hHHHHHHHHHH--HhhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 179 FTV-QEGIDALEEVI--YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 179 ~~~-~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
... +++.+.+.+-. -.++.|.++... ...+-.+.+.+++.|+.+++..-
T Consensus 142 ~~d~~~l~~ai~~~tklV~~esp~Nptg~-v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 142 GEDLSQWEEALSVPTQAVFFETPSNPMQS-LVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECC
Confidence 532 22222222100 013445433221 11233456667777887776543
No 172
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=30.22 E-value=2.8e+02 Score=24.61 Aligned_cols=57 Identities=11% Similarity=-0.040 Sum_probs=32.0
Q ss_pred EEeec----CcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceE
Q 020993 114 GVLLS----GGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176 (319)
Q Consensus 114 ~v~LS----GGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~ 176 (319)
++.+| +|.|+...+..+++...+. +.++...-....+.+-....-.+|+.||+++..
T Consensus 84 avli~d~~~~g~D~~~tA~~La~ai~~~------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 84 LIVVIDDQFEQALPQQTASALAAAAQKA------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred EEEEecCcccCcCHHHHHHHHHHHHHHh------CCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 56666 5778888887777766431 112222211111222334566788999988753
No 173
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=29.58 E-value=79 Score=27.14 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHH
Q 020993 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASR 132 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~ 132 (319)
.+.+.+.+.+++.+.....+.+.||||--=..+...+++
T Consensus 6 ~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~ 44 (219)
T cd01400 6 ALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAA 44 (219)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEECCCccHHHHHHHhcc
Confidence 344444445555444456788999999877776666554
No 174
>PRK06767 methionine gamma-lyase; Provisional
Probab=29.38 E-value=3.1e+02 Score=25.70 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=48.5
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeC-hhHHHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT-VQEGIDALEE 190 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~-~~~~~~~~~~ 190 (319)
+-++.+++|.. .+.+++ .....+ |..+.+-...+ .......+..++.+|++...+... .+++.+.+.+
T Consensus 77 ~~al~~~sG~~-Ai~~~l-~al~~~-------Gd~Vv~~~~~y--~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~ 145 (386)
T PRK06767 77 EEALAFGSGMA-AISATL-IGFLKA-------GDHIICSNGLY--GCTYGFLEVLEEKFMITHSFCDMETEADIENKIRP 145 (386)
T ss_pred CcEEEECCHHH-HHHHHH-HHHhCC-------CCEEEEcCCcH--HHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCc
Confidence 34788999974 333333 222221 23333211111 122334555566777766555433 2233322221
Q ss_pred ---HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCc
Q 020993 191 ---VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (319)
Q Consensus 191 ---~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~ 230 (319)
++ ..+.|.+++.. ....-.+.+.+++.|+.+++.+--+
T Consensus 146 ~tklV-~lesp~NptG~-v~dl~~I~~la~~~g~~vivD~a~a 186 (386)
T PRK06767 146 NTKLI-FVETPINPTMK-LIDLKQVIRVAKRNGLLVIVDNTFC 186 (386)
T ss_pred CceEE-EEeCCCCCCce-ecCHHHHHHHHHHcCCEEEEECCCc
Confidence 11 12445443221 1122345566777788888766543
No 175
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=28.52 E-value=95 Score=26.97 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHH
Q 020993 94 VLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASR 132 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~ 132 (319)
++.+.+.+.+.+.+.......+.||||-==..+...+++
T Consensus 11 ~~~~~~a~~i~~~i~~~~~~~l~lsgGstP~~~y~~L~~ 49 (232)
T PRK09762 11 ALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLVE 49 (232)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHHH
Confidence 344444444444444456789999999876666666664
No 176
>PRK05939 hypothetical protein; Provisional
Probab=27.86 E-value=4.3e+02 Score=24.95 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=48.5
Q ss_pred CCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHH
Q 020993 111 VPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEE 190 (319)
Q Consensus 111 ~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~ 190 (319)
...++.+|.|+ +.+.+++...... |..+.+.+..+... .... ..++.+|++...++... .+.+++
T Consensus 62 ~~~~v~~ssG~--~Ai~~~l~all~~-------Gd~Vv~~~~~y~~t--~~~~-~~l~~~G~~v~~v~~~d---~e~l~~ 126 (397)
T PRK05939 62 GVGTVCFATGM--AAIAAVFLTLLRA-------GDHLVSSQFLFGNT--NSLF-GTLRGLGVEVTMVDATD---VQNVAA 126 (397)
T ss_pred CCeEEEeCCHH--HHHHHHHHHHcCC-------CCEEEECCCccccH--HHHH-HHHHhcCCEEEEECCCC---HHHHHH
Confidence 34578899896 4444443333322 23444433222211 1122 23567888877776532 122332
Q ss_pred HHH------hhccCCcCccCchHHHHHHHHHHHhcCCeEEEec
Q 020993 191 VIY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (319)
Q Consensus 191 ~~~------~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG 227 (319)
.+. ..+.|.+++.. ....-.+.+.+++.|+.+++.+
T Consensus 127 ~l~~~tklV~vesp~NptG~-v~dl~~I~~la~~~gi~livD~ 168 (397)
T PRK05939 127 AIRPNTRMVFVETIANPGTQ-VADLAGIGALCRERGLLYVVDN 168 (397)
T ss_pred hCCCCCeEEEEECCCCCCCC-HHhHHHHHHHHHHcCCEEEEEC
Confidence 221 12344332211 1233456677788888887765
No 177
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=27.50 E-value=4.4e+02 Score=23.41 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=41.6
Q ss_pred CCCeEEeecCcccHHH---HHHHHHHHhhhhhhhhhcCCCcceeeccCCCC-------------ccHHHHHHHHHHhCCc
Q 020993 110 DVPFGVLLSGGLDSSL---VAAVASRYLADSEAACQWGSQLHSFCIGLEGS-------------PDLKAAREVADYLGTR 173 (319)
Q Consensus 110 ~~~v~v~LSGGlDSs~---iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-------------~e~~~A~~va~~lg~~ 173 (319)
..++.+.||.|.|+.. +..++..+.. ..+..|++++.+. .+.+.-+++|+..|-.
T Consensus 164 ~rk~iIllTDG~~~~~~~~~~~~~~~~~~---------~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~ 234 (296)
T TIGR03436 164 GRKALIVISDGGDNRSRDTLERAIDAAQR---------ADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGR 234 (296)
T ss_pred CCeEEEEEecCCCcchHHHHHHHHHHHHH---------cCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCe
Confidence 3567899999999753 2222222211 3567777776421 2356678888888876
Q ss_pred ceEEEeChhHHHHHHHHHH
Q 020993 174 HHEFHFTVQEGIDALEEVI 192 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~ 192 (319)
.... +..++.+.+..+.
T Consensus 235 ~~~~--~~~~l~~~f~~i~ 251 (296)
T TIGR03436 235 AFYV--NSNDLDGAFAQIA 251 (296)
T ss_pred Eecc--cCccHHHHHHHHH
Confidence 5333 4445544444443
No 178
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.07 E-value=2.9e+02 Score=26.46 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=49.5
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHHH
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVI 192 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~ 192 (319)
-+++.|+|.....++..+- ... |..+.+-...+. .-.......++.+|++...++++. .+.+++.+
T Consensus 81 ~av~~sSGt~Al~~al~~l--l~~-------Gd~Vi~~~~~y~--~t~~~~~~~l~~~Gi~v~~vd~~d---~~~l~~~i 146 (433)
T PRK08134 81 GAIATASGQAALHLAIATL--MGA-------GSHIVASSALYG--GSHNLLHYTLRRFGIETTFVKPGD---IDGWRAAI 146 (433)
T ss_pred cEEEeCCHHHHHHHHHHHH--hCC-------CCEEEEeCCccH--HHHHHHHHHHhhCCeEEEEECCCC---HHHHHHhc
Confidence 3799999987766544322 211 234443332222 122233344567888877776642 22233222
Q ss_pred H------hhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 193 Y------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 193 ~------~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
. ..+.+.++... ...+-.+++.+++.|+.+++.+-
T Consensus 147 ~~~TklV~~e~~~np~g~-v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 147 RPNTRLLFGETLGNPGLE-VLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred CCCCeEEEEECCCcccCc-ccCHHHHHHHHHHcCCEEEEECC
Confidence 1 12333322110 11233456777778888877643
No 179
>PF00274 Glycolytic: Fructose-bisphosphate aldolase class-I; InterPro: IPR000741 Fructose-bisphosphate aldolase (4.1.2.13 from EC) [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms: class I enzymes [] do not require a metal ion, and are characterised by the formation of a Schiff base intermediate between a highly conserved active site lysine and a substrate carbonyl group, while the class II enzymes require an active-site divalent metal ion. This entry represents the class I enzymes. In vertebrates, three forms of this enzyme are found: aldolase A is expressed in muscle, aldolase B in liver, kidney, stomach and intestine, and aldolase C in brain, heart and ovary. The different isozymes have different catalytic functions: aldolases A and C are mainly involved in glycolysis, while aldolase B is involved in both glycolysis and gluconeogenesis. Defects in aldolase B result in hereditary fructose intolerance.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis; PDB: 1EX5_B 6ALD_D 2QUU_B 3DFN_B 1ADO_B 3DFO_A 1ZAL_A 1J4E_C 3DFP_A 1ZAJ_B ....
Probab=27.03 E-value=1.8e+02 Score=27.00 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHhhCCCeEEeecCcccH
Q 020993 91 DPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDS 123 (319)
Q Consensus 91 ~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDS 123 (319)
..+++...--++.++.++..+|-.++||||..-
T Consensus 230 ~~~~vA~~T~~~l~~~vP~aVpgIvFLSGGqs~ 262 (348)
T PF00274_consen 230 SPEEVAEATVRALRRTVPAAVPGIVFLSGGQSE 262 (348)
T ss_dssp -HHHHHHHHHHHHHHHSBTTSSEEEEB-TTS-H
T ss_pred CHHHHHHHHHHHHHHhcccccceeEecCCCCCH
Confidence 356677777778888888889999999999854
No 180
>PRK09028 cystathionine beta-lyase; Provisional
Probab=26.33 E-value=4.8e+02 Score=24.68 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=50.4
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhH-HHHHHHHH
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQE-GIDALEEV 191 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~-~~~~~~~~ 191 (319)
-++.++||......+..+ .... |..+.+.+-.+. .-........+.+|++...+..+..+ +.+.+.+-
T Consensus 78 ~~~~~~sG~~Ai~~~l~a--ll~~-------GD~Vvv~~~~Y~--~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~ 146 (394)
T PRK09028 78 GTALYPSGAAAISNALLS--FLKA-------GDHLLMVDSCYE--PTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPN 146 (394)
T ss_pred cEEEECCHHHHHHHHHHH--HhCC-------CCEEEEECCCcH--HHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcC
Confidence 468999998765433322 2221 234544433332 12233445566788877766543322 22222110
Q ss_pred H--HhhccCCcCccCchHHHHHHHHHHHhcCCeEEEec
Q 020993 192 I--YHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (319)
Q Consensus 192 ~--~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG 227 (319)
. -.++.|.+++.. ....-.+++.|++.|+-+++..
T Consensus 147 TklV~lespsNPtg~-v~dl~~I~~la~~~g~~lvvD~ 183 (394)
T PRK09028 147 TKVLFLESPGSITME-VQDVPTLSRIAHEHDIVVMLDN 183 (394)
T ss_pred ceEEEEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEEC
Confidence 0 113555544322 1233456777888888777654
No 181
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.10 E-value=6e+02 Score=24.49 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHHHHhhccCCc-
Q 020993 122 DSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEVIYHIETYDV- 200 (319)
Q Consensus 122 DSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~~e~~~~- 200 (319)
=|++++-++++.... .-..|-.| ++ -....+.-|++||+++..+.+-.+.-++.+...+.. +.|..
T Consensus 106 KSTLLLQva~~lA~~---------~~vLYVsG-EE--S~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~-~~p~lv 172 (456)
T COG1066 106 KSTLLLQVAARLAKR---------GKVLYVSG-EE--SLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ-EKPDLV 172 (456)
T ss_pred HHHHHHHHHHHHHhc---------CcEEEEeC-Cc--CHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHh-cCCCEE
Confidence 367777676665421 22233222 22 234466678999988776666554334433333222 12211
Q ss_pred -------------CccCchH-----HHHHHHHHHHhcCCeEEEeccC
Q 020993 201 -------------TTIRAST-----PMFLMSRKIKSLGVKMVISGEG 229 (319)
Q Consensus 201 -------------~~~~~~~-----~~~~l~~~a~~~g~~v~ltG~G 229 (319)
...+.++ ....|.+.|++.|+.+++.||=
T Consensus 173 VIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 173 VIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred EEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 1111122 1245667889999999998874
No 182
>PRK06460 hypothetical protein; Provisional
Probab=26.04 E-value=5.2e+02 Score=24.06 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=47.0
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHH-H-
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALE-E- 190 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~-~- 190 (319)
.++.+++|.. .+..++.....+ |..+..-+-.+. .-...-...++..|.+...+..+..+.++.+. +
T Consensus 62 ~~v~~~sG~~--ai~~~l~al~~~-------Gd~Vl~~~~~~~--~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~ 130 (376)
T PRK06460 62 MGVAFSSGMG--AISTTALALLKP-------GNSVLVHRDMFG--RSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKR 130 (376)
T ss_pred cEEEeCCHHH--HHHHHHHHHhCC-------CCEEEEecCCcC--cHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCC
Confidence 4678899973 444433333322 233333211111 12233445677888877666554433333221 0
Q ss_pred --HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 191 --VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 191 --~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
++ ..+.|.+++.. ....-.+.+.+++.|+.+++..-
T Consensus 131 tklV-~l~sp~NPtG~-v~d~~~I~~la~~~g~~vivDea 168 (376)
T PRK06460 131 YDVV-FVENITNPLLR-VVDITELSKVCKENGSILIVDAT 168 (376)
T ss_pred ceEE-EEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEECC
Confidence 11 12444433221 11122355667777777776543
No 183
>PRK08064 cystathionine beta-lyase; Provisional
Probab=25.45 E-value=3.9e+02 Score=25.11 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=50.3
Q ss_pred eEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeCh-hHHHHHHHH-
Q 020993 113 FGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTV-QEGIDALEE- 190 (319)
Q Consensus 113 v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~-~~~~~~~~~- 190 (319)
-++.+|-|+.. +.+.+. .... |..+.+-...|. .-.....++++..|++...+.+.. +++.+.+.+
T Consensus 71 ~~v~~~sG~~a--i~~~l~-~l~~-------Gd~Vlv~~~~y~--~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~ 138 (390)
T PRK08064 71 KGFAFASGMAA--ISTAFL-LLSK-------GDHVLISEDVYG--GTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPN 138 (390)
T ss_pred CeEEECCHHHH--HHHHHH-HhCC-------CCEEEEccCccc--hHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC
Confidence 36788999753 333332 3322 233433322222 123345566788899888877642 222222211
Q ss_pred --HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 191 --VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 191 --~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
++ ..+.|.+++.. ....-.+.+.+++.|+.+++.+-
T Consensus 139 tklV-~l~~p~NptG~-~~dl~~I~~la~~~g~~vvvD~a 176 (390)
T PRK08064 139 TKLF-YVETPSNPLLK-VTDIRGVVKLAKAIGCLTFVDNT 176 (390)
T ss_pred ceEE-EEECCCCCCcE-eccHHHHHHHHHHcCCEEEEECC
Confidence 11 12445433221 12233456777788888888764
No 184
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=25.36 E-value=1.4e+02 Score=26.16 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=30.9
Q ss_pred CccHHHHHHHHHHHHHH-HHhhCCCeEEeecCcccHHHHHHHHHHH
Q 020993 89 PYDPLVLRKAFEKAVVK-RLMTDVPFGVLLSGGLDSSLVAAVASRY 133 (319)
Q Consensus 89 ~~~~~~l~~~l~~av~~-rl~~~~~v~v~LSGGlDSs~iaa~~~~~ 133 (319)
++..+.+.+.+.+.++. .+..+.+..+.||||-.=.-+...+++.
T Consensus 10 ~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgG~tP~~~y~~L~~~ 55 (253)
T PTZ00285 10 DAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRA 55 (253)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCeEEEEcCCCCHHHHHHHHHHH
Confidence 33445566666666665 4455678899999998877777666654
No 185
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.25 E-value=3.4e+02 Score=26.10 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+.... ....++.+++|+....++.++. ..+ |..+.+-...|.. -..........+|++...++
T Consensus 66 lE~~la~le--g~~~av~~~SG~aAi~~al~al--l~~-------GD~VI~~~~~Y~~--T~~~~~~~l~~~Gi~v~~vd 132 (432)
T PRK06702 66 FEQKLAELE--GGVGAVATASGQAAIMLAVLNI--CSS-------GDHLLCSSTVYGG--TFNLFGVSLRKLGIDVTFFN 132 (432)
T ss_pred HHHHHHHHh--CCCcEEEECCHHHHHHHHHHHh--cCC-------CCEEEECCCchHH--HHHHHHHHHHHCCCEEEEEC
Confidence 344444432 2345789999997765544322 221 2344432222211 12333445678899887776
Q ss_pred eC--hhHHHHHHHH---HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEec
Q 020993 179 FT--VQEGIDALEE---VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 227 (319)
Q Consensus 179 ~~--~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG 227 (319)
+. ++++.+.+.+ +++ .+.|.++.... ..+-.+.+.|++.|+.++..-
T Consensus 133 ~~~d~~~l~~~I~~~Tk~I~-~e~pgnP~~~v-~Di~~I~~iA~~~gi~livD~ 184 (432)
T PRK06702 133 PNLTADEIVALANDKTKLVY-AESLGNPAMNV-LNFKEFSDAAKELEVPFIVDN 184 (432)
T ss_pred CCCCHHHHHHhCCcCCeEEE-EEcCCCccccc-cCHHHHHHHHHHcCCEEEEEC
Confidence 53 2333322221 122 35554433211 113345677777888777755
No 186
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=25.05 E-value=3.6e+02 Score=22.78 Aligned_cols=26 Identities=23% Similarity=0.069 Sum_probs=13.2
Q ss_pred HHHHHHHHHHH-h--hCCCeEEeecCccc
Q 020993 97 KAFEKAVVKRL-M--TDVPFGVLLSGGLD 122 (319)
Q Consensus 97 ~~l~~av~~rl-~--~~~~v~v~LSGGlD 122 (319)
+.+..|+++-. . ++..+.++||=|-+
T Consensus 95 dAi~~av~rl~~~~~a~~kvvILLTDG~n 123 (191)
T cd01455 95 EATEFAIKELAAKEDFDEAIVIVLSDANL 123 (191)
T ss_pred HHHHHHHHHHHhcCcCCCcEEEEEeCCCc
Confidence 44445554421 1 23456677766665
No 187
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=24.95 E-value=2.5e+02 Score=23.41 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=14.3
Q ss_pred CcceeeccCCCCccHHHHHHHHHHhCCc
Q 020993 146 QLHSFCIGLEGSPDLKAAREVADYLGTR 173 (319)
Q Consensus 146 ~~~~~t~~~~~~~e~~~A~~va~~lg~~ 173 (319)
.+..+++++....+....+++|+.-|-.
T Consensus 168 ~i~i~~igiG~~~~~~~l~~iA~~tgG~ 195 (206)
T cd01456 168 PIKVNVIDFGGDADRAELEAIAEATGGT 195 (206)
T ss_pred CceEEEEEecCcccHHHHHHHHHhcCCe
Confidence 3444444444334455566666666543
No 188
>PRK07671 cystathionine beta-lyase; Provisional
Probab=24.88 E-value=5.1e+02 Score=24.16 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+..... .+-++.+|-|.+ .+.+++. .... |..+.+-...|. .-.....++++.+|++...+.
T Consensus 55 Le~~lA~l~g--~~~~~~~~sG~a--ai~~~~~-~l~~-------Gd~Viv~~~~y~--~~~~~~~~~~~~~G~~v~~v~ 120 (377)
T PRK07671 55 LEELIAVLEG--GHAGFAFGSGMA--AITAVMM-LFSS-------GDHVILTDDVYG--GTYRVMTKVLNRFGIEHTFVD 120 (377)
T ss_pred HHHHHHHHhC--CCceEEeCCHHH--HHHHHHH-HhCC-------CCEEEECCCccc--hHHHHHHHHHhcCCeEEEEEC
Confidence 4444444432 234678888974 3333332 2221 233433222221 123334456677888877765
Q ss_pred eC-hhHHHHHHHHHHH--hhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 179 FT-VQEGIDALEEVIY--HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 179 ~~-~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
.. .+++.+.+.+-.. ..+.|.+++.. ...+-.+.+.+++.|+.+++..-
T Consensus 121 ~~d~~~l~~ai~~~tklV~le~P~NPtg~-~~dl~~I~~la~~~g~~lvvD~a 172 (377)
T PRK07671 121 TSNLEEVEEAIRPNTKAIYVETPTNPLLK-ITDIKKISTIAKEKGLLTIVDNT 172 (377)
T ss_pred CCCHHHHHHhcCCCCeEEEEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEECC
Confidence 43 2233332211001 12455443221 11233456667778888887654
No 189
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=24.15 E-value=2.5e+02 Score=23.58 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHh
Q 020993 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYL 134 (319)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~ 134 (319)
+++.+.+.+.+...+.......+.||||---..+...+.+..
T Consensus 3 ~~~a~~i~~~i~~~i~~~~~~~i~LsgGstp~~~y~~L~~~~ 44 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAERGRAVIALSGGSTPKPLYQELAKLH 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEE--SCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhhhc
Confidence 344555555556655556778999999988887777776654
No 190
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=24.01 E-value=1.2e+02 Score=20.54 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=17.5
Q ss_pred EEEECCCCEEEEEecCCCC--cceEEE
Q 020993 9 VLLDTRDKSFIAARDAIGV--TPLYMG 33 (319)
Q Consensus 9 ~i~D~~~~~l~l~rD~~G~--kpLyy~ 33 (319)
+.||...+++.+..|. |+ +||+.-
T Consensus 36 i~~~~~~~ei~I~tD~-GR~~RPL~vV 61 (63)
T PF04566_consen 36 IVYDIREKEIRINTDA-GRLCRPLFVV 61 (63)
T ss_dssp EEEETTTTEEEEE-SS-CEEEEEEEEE
T ss_pred EEEeccCCEEEEEccC-CcccceeEEe
Confidence 4688889999999994 54 687763
No 191
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=23.91 E-value=4.5e+02 Score=24.76 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=47.6
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeC-hhHHHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFT-VQEGIDALEE 190 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~-~~~~~~~~~~ 190 (319)
+-++.+++|.. .+..++...... |..+.+-...+.. -....+..++.+|++...++.. .+++.+.+.+
T Consensus 80 ~~~i~~ssG~~--Ai~~~l~all~~-------GD~Vi~~~~~y~~--~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~ 148 (398)
T PRK08249 80 EAATAFSTGMA--AISNTLYTFLKP-------GDRVVSIKDTYGG--TNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAK 148 (398)
T ss_pred CeEEEeCChHH--HHHHHHHHhcCC-------CCEEEEcCCchHH--HHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCC
Confidence 34789999963 333333222221 2334332222211 1122334566778776555432 2222222211
Q ss_pred ---HHHhhccCCcCccCchHHHHHHHHHHHhcCCeEEEeccCc
Q 020993 191 ---VIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 230 (319)
Q Consensus 191 ---~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~G~ 230 (319)
++ ..+.|.+++... ...-.+.+.+++.|+.+++..--+
T Consensus 149 ~tklV-~ie~p~NPtg~v-~dl~~I~~la~~~gi~livD~t~a 189 (398)
T PRK08249 149 GCDLL-YLETPTNPTLKI-VDIERLAAAAKKVGALVVVDNTFA 189 (398)
T ss_pred CCeEE-EEECCCCCCCcc-CCHHHHHHHHHHcCCEEEEECCcC
Confidence 11 123454332211 122345677778888887766544
No 192
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=23.60 E-value=5.7e+02 Score=23.39 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeE-EeecCcccHHHHHHHHHHH---hhhhhhhhhcCCCcceeeccCCCCccHHHHHHHH
Q 020993 92 PLVLRKAFEKAVVKRLMTDVPFG-VLLSGGLDSSLVAAVASRY---LADSEAACQWGSQLHSFCIGLEGSPDLKAAREVA 167 (319)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~-v~LSGGlDSs~iaa~~~~~---~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va 167 (319)
..++.+..++.+++.+....+-. ++.+|+-. .+-.++... ..+ +..+.+.+.++ .......+.++
T Consensus 41 ~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~--a~~~~~~~l~~~~~~-------g~~vl~~~~~~--~s~~~~~~~~~ 109 (371)
T PF00266_consen 41 FAEILEEAREALAKLLGAPPDEEVVFTSNGTE--ALNAVASSLLNPLKP-------GDEVLVTSNEH--PSNRYPWEEIA 109 (371)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTEEEEEESSHHH--HHHHHHHHHHHHGTT-------TCEEEEEESSH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCccccccccccccch--hhhhhhhcccccccc-------ccccccccccc--ccccccccccc
Confidence 34555566666777665544233 44555543 333333333 221 23454444433 23455577888
Q ss_pred HHhCCcceEEEeChhHH--HHHHHHHHHhhccCCc---CccC----chHHHHHHHHHHHhcCCeEEEecc
Q 020993 168 DYLGTRHHEFHFTVQEG--IDALEEVIYHIETYDV---TTIR----ASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 168 ~~lg~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~---~~~~----~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
+..|.+...++.+.... .+.+.+.+. +.+.. +.+. ...+.-.+++.+++.|+-+++.|-
T Consensus 110 ~~~g~~v~~i~~~~~~~~~~~~~~~~l~--~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~ 177 (371)
T PF00266_consen 110 KRKGAEVRVIPADPGGSLDLEDLEEALN--PDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAA 177 (371)
T ss_dssp HHTTEEEEEEEEGTTSSCSHHHHHHHHH--TTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-T
T ss_pred ccchhhhccccccccchhhhhhhhhhhc--cccceEEeecccccccEEeeeceehhhhhccCCceeEech
Confidence 89999988887743221 233443332 11110 0000 012344567778888888888875
No 193
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=23.23 E-value=3.1e+02 Score=28.05 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=34.6
Q ss_pred CCccHHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHH
Q 020993 88 NPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRY 133 (319)
Q Consensus 88 ~~~~~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~ 133 (319)
.++....+.+.+.+.+++......+..+.||||-.=..+...+.+.
T Consensus 36 ~ee~a~~vA~~I~~~I~~~~~~~~~~~laLsGGsTP~~~Y~~L~~~ 81 (652)
T PRK02122 36 SEEASRAVAQEIATLIRERQAEGKPCVLGLATGSSPIGVYAELIRM 81 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcCHHHHHHHHHhh
Confidence 3444566777777777777777788999999998888887776654
No 194
>PRK12342 hypothetical protein; Provisional
Probab=22.81 E-value=2.3e+02 Score=25.06 Aligned_cols=58 Identities=12% Similarity=-0.063 Sum_probs=32.2
Q ss_pred eEEeec----CcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceE
Q 020993 113 FGVLLS----GGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHE 176 (319)
Q Consensus 113 v~v~LS----GGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~ 176 (319)
-++.+| +|.|+...+..+++...+. +.++...--...+.+.-...-.+|+.||+++..
T Consensus 80 ~avli~d~~~~g~D~~ata~~La~~i~~~------~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 80 SLYLVQDAQLEHALPLDTAKALAAAIEKI------GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred EEEEEecCccCCCCHHHHHHHHHHHHHHh------CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 367777 5778877776666655421 122222211111223345567888999988753
No 195
>PRK07050 cystathionine beta-lyase; Provisional
Probab=22.68 E-value=6.5e+02 Score=23.66 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEE
Q 020993 99 FEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFH 178 (319)
Q Consensus 99 l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~ 178 (319)
|++.+.+... ..-++..+||...-.++..+- ..+ |..+.+-...|.. -.......++.+|++...++
T Consensus 70 Le~~lA~l~g--~~~~l~~~sgt~Ai~~~l~al--~~~-------GD~Vl~~~~~y~~--~~~~~~~~~~~~Gi~v~~vd 136 (394)
T PRK07050 70 LAQRLAEIEG--GRHALLQPSGLAAISLVYFGL--VKA-------GDDVLIPDNAYGP--NRDHGEWLARDFGITVRFYD 136 (394)
T ss_pred HHHHHHHHhC--CCeEEEeccHHHHHHHHHHHH--hCC-------CCEEEEecCCccc--HHHHHHHHHHhcCeEEEEEC
Confidence 4444444432 335788899987765544322 221 2344443333322 12234556788898877665
Q ss_pred eChhHHHHHHHHHHH------hhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 179 FTVQEGIDALEEVIY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 179 ~~~~~~~~~~~~~~~------~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
.... +.+++.+. ..+.|.++... ...+-.+++.+++.|+.+++.+-
T Consensus 137 ~~~~---~~l~~~i~~~tklV~le~p~Np~~~-~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 137 PLIG---AGIADLIQPNTRLIWLEAPGSVTME-VPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred CCCH---HHHHHhcCCCCeEEEEECCCCCCcc-HhhHHHHHHHHHHcCCEEEEECC
Confidence 4321 22222221 13445443322 12234566777888888888764
No 196
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=22.47 E-value=3.4e+02 Score=25.41 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCeEEEec
Q 020993 210 FLMSRKIKSLGVKMVISG 227 (319)
Q Consensus 210 ~~l~~~a~~~g~~v~ltG 227 (319)
-.+.+.+++.|+.+++..
T Consensus 166 ~~I~~la~~~gi~lIvD~ 183 (388)
T PRK07811 166 AALAELAHDAGAKVVVDN 183 (388)
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 345566777787777665
No 197
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=22.24 E-value=2.8e+02 Score=24.08 Aligned_cols=41 Identities=2% Similarity=-0.002 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHH
Q 020993 93 LVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRY 133 (319)
Q Consensus 93 ~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~ 133 (319)
+++.+.+.+.+..++....+..+.||||-.-..+...+++.
T Consensus 10 ~e~~~~~a~~i~~~i~~~~~~~l~lsgG~tp~~~y~~L~~~ 50 (239)
T PRK12358 10 EEMSRVAAHHLLGYMSKTKRVNLAITAGSTPKGMYEYLITL 50 (239)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHH
Confidence 34444444445555555667899999999888888777764
No 198
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=22.08 E-value=1e+02 Score=27.17 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCeEEeecCcccHHHHHHHHHHHh
Q 020993 92 PLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYL 134 (319)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~v~v~LSGGlDSs~iaa~~~~~~ 134 (319)
.+++.+.+.+--..-+..++...+.|||| |++-++.....
T Consensus 21 ~~~l~~~~~~~s~~~~~~~g~F~i~lSGG---SLi~~L~~~l~ 60 (252)
T KOG3147|consen 21 IEALAGYIAEKSEKALKKRGRFTLALSGG---SLIQVLSKLLE 60 (252)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcCC---cHHHHHHHHhc
Confidence 34444444444444445667799999999 56665555443
No 199
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.03 E-value=6.6e+02 Score=23.49 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=48.3
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhCCcceEEEeChhHHHHHHHHH
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLGTRHHEFHFTVQEGIDALEEV 191 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg~~~~~~~~~~~~~~~~~~~~ 191 (319)
+-++.++||......+ +.....+ |..+.+....+. .-...+....+.+|++...++.... +.+++.
T Consensus 66 ~~~~~~~sG~~Ai~~a--l~all~~-------GD~Vl~~~~~y~--~t~~~~~~~~~~~gi~v~~~d~~~~---e~l~~~ 131 (377)
T TIGR01324 66 AGCYLYPSGLAAVTNS--ILAFVKA-------GDHVLMVDSAYE--PTRYFCDIVLKRMGVDITYYDPLIG---EDIATL 131 (377)
T ss_pred CcEEEECcHHHHHHHH--HHHhcCC-------CCEEEEcCCCcH--HHHHHHHHHHHhcCcEEEEECCCCH---HHHHHh
Confidence 3578899996544333 2222222 233433222221 1122344556778887666544322 223322
Q ss_pred HH------hhccCCcCccCchHHHHHHHHHHHhcCCeEEEecc
Q 020993 192 IY------HIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGE 228 (319)
Q Consensus 192 ~~------~~e~~~~~~~~~~~~~~~l~~~a~~~g~~v~ltG~ 228 (319)
+. .++.|.+++.. ...+-.+++.+++.|+.+++..-
T Consensus 132 i~~~tklV~lesp~Np~g~-~~dl~~I~~la~~~g~~livD~t 173 (377)
T TIGR01324 132 IQPNTKVLFLEAPSSITFE-IQDIPAIAKAARNPGIVIMIDNT 173 (377)
T ss_pred cCCCceEEEEECCCCCCCc-HHHHHHHHHHHHHcCCEEEEECC
Confidence 21 12344432221 12233566777888888877654
No 200
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=21.84 E-value=4.6e+02 Score=21.60 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHh--h--CCCeEEeecCcccHH--HHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHH
Q 020993 94 VLRKAFEKAVVKRLM--T--DVPFGVLLSGGLDSS--LVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVA 167 (319)
Q Consensus 94 ~l~~~l~~av~~rl~--~--~~~v~v~LSGGlDSs--~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va 167 (319)
.+.+.|..|.+.-.. . ...+.+.+|+|-|+. -+..+++++.. ..+.-+++++. .+...-+++|
T Consensus 87 ~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~---------~~I~v~~IgiG--~~~~~L~~ia 155 (183)
T cd01453 87 SLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDKLKK---------ENIRVSVIGLS--AEMHICKEIC 155 (183)
T ss_pred hHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHHHHH---------cCcEEEEEEec--hHHHHHHHHH
Confidence 466666666544321 1 234778889887652 22222222221 24555556553 4566788999
Q ss_pred HHhCCcceEE
Q 020993 168 DYLGTRHHEF 177 (319)
Q Consensus 168 ~~lg~~~~~~ 177 (319)
+.-|-.+...
T Consensus 156 ~~tgG~~~~~ 165 (183)
T cd01453 156 KATNGTYKVI 165 (183)
T ss_pred HHhCCeeEee
Confidence 9999876654
No 201
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=21.82 E-value=32 Score=27.02 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=13.3
Q ss_pred hCCCeEEeecCcccHH
Q 020993 109 TDVPFGVLLSGGLDSS 124 (319)
Q Consensus 109 ~~~~v~v~LSGGlDSs 124 (319)
++...|..+|||+||.
T Consensus 135 tnpatg~pm~gg~d~~ 150 (164)
T PF10624_consen 135 TNPATGLPMHGGVDSA 150 (164)
T ss_pred cCCCcCCcccCCcccC
Confidence 4566899999999985
No 202
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=21.62 E-value=2.8e+02 Score=24.19 Aligned_cols=41 Identities=12% Similarity=-0.041 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCC-eEEeecCcccHHHHHHHHHH
Q 020993 92 PLVLRKAFEKAVVKRLMTDVP-FGVLLSGGLDSSLVAAVASR 132 (319)
Q Consensus 92 ~~~l~~~l~~av~~rl~~~~~-v~v~LSGGlDSs~iaa~~~~ 132 (319)
.....+.+.+.++..+....+ ..+.+|||---..+...+.+
T Consensus 13 ~~~aa~~l~~~l~~~~~~~~~~~~iglsgG~T~~~~~~~L~~ 54 (261)
T PRK00443 13 GKWAARHIANRINAFLPTKERPFVLGLATGSSPLETYKALIE 54 (261)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEecCCCCHHHHHHHHHH
Confidence 344455555555444433333 44679999886666665553
No 203
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=21.60 E-value=1e+02 Score=26.75 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=34.6
Q ss_pred CeEEeecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCC-C--CccH----------HHHHHHHHHhCCcceEEE
Q 020993 112 PFGVLLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLE-G--SPDL----------KAAREVADYLGTRHHEFH 178 (319)
Q Consensus 112 ~v~v~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~-~--~~e~----------~~A~~va~~lg~~~~~~~ 178 (319)
++..++|||.||-.-.-.+.+.+ ..+++..--.+ + .+|. +.+...|+-++++...-.
T Consensus 2 rvvaLiSGGKDScynmm~cv~~g----------HeiVaLanl~p~~d~~delDSyMyQtVGh~~i~lyaecm~lPlyrr~ 71 (277)
T KOG2316|consen 2 RVVALISGGKDSCYNMMCCVRLG----------HEIVALANLHPKEDESDELDSYMYQTVGHDVIDLYAECMGLPLYRRR 71 (277)
T ss_pred cEEEEEeCChHHHHHHHHHHHcC----------CeeeeeecccCCcccchhHHHHHHHhhhHHHHHHHHHHhcCceeeee
Confidence 36679999999997665555443 45666542222 2 2332 235556788888775544
Q ss_pred e
Q 020993 179 F 179 (319)
Q Consensus 179 ~ 179 (319)
+
T Consensus 72 i 72 (277)
T KOG2316|consen 72 I 72 (277)
T ss_pred c
Confidence 3
No 204
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.77 E-value=3.3e+02 Score=22.22 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=16.4
Q ss_pred HHHHhcCCeEEEeccCccccccCc
Q 020993 214 RKIKSLGVKMVISGEGSDEIFGGY 237 (319)
Q Consensus 214 ~~a~~~g~~v~ltG~G~Delf~Gy 237 (319)
+.+.++|++|++.+-|...-+.|.
T Consensus 47 ~~a~~~g~~viIa~AG~aa~Lpgv 70 (156)
T TIGR01162 47 KEAEERGIKVIIAGAGGAAHLPGM 70 (156)
T ss_pred HHHHHCCCeEEEEeCCccchhHHH
Confidence 445556788888888877655554
No 205
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.52 E-value=6e+02 Score=23.82 Aligned_cols=23 Identities=13% Similarity=0.427 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCeEEEeccCcccc
Q 020993 211 LMSRKIKSLGVKMVISGEGSDEI 233 (319)
Q Consensus 211 ~l~~~a~~~g~~v~ltG~G~Del 233 (319)
++.+.|.++|+..++-|+-++.+
T Consensus 187 ll~~vA~~~g~~~i~~g~~~t~l 209 (396)
T KOG2594|consen 187 LLQKVAAENGYNRIVLGDSTTDL 209 (396)
T ss_pred HHHHHHHHcCCCEEEecCchhHH
Confidence 45567889999999999999875
No 206
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=20.39 E-value=6.3e+02 Score=22.64 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhhCCC-eEE-eecCcccHHHHHHHHHHHhhhhhhhhhcCCCcceeeccCCCCccHHHHHHHHHHhC
Q 020993 94 VLRKAFEKAVVKRLMTDVP-FGV-LLSGGLDSSLVAAVASRYLADSEAACQWGSQLHSFCIGLEGSPDLKAAREVADYLG 171 (319)
Q Consensus 94 ~l~~~l~~av~~rl~~~~~-v~v-~LSGGlDSs~iaa~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~e~~~A~~va~~lg 171 (319)
+..+.+++.+++.+..+.. +.+ ..+|| |..+.+++.....+ +..+...+-+.- .. ....+++.+|
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~g--t~~l~~~~~~~~~~-------~~~vi~~~~~~~--~~--~~~~~a~~~g 97 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSG--TFAVEATIGSLVPR-------DGKLLVLINGAY--GE--RLAKICEYLG 97 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCc--HHHHHHHHHhccCC-------CCeEEEECCCch--hh--HHHHHHHHcC
Confidence 4455555666666654332 334 56677 44444444443321 122222221111 11 1346678899
Q ss_pred CcceEEEeChhH--HHHHHHHHHHhhcc------CCcCcc-CchHHHHHHHHHHHhcCCeEEEec
Q 020993 172 TRHHEFHFTVQE--GIDALEEVIYHIET------YDVTTI-RASTPMFLMSRKIKSLGVKMVISG 227 (319)
Q Consensus 172 ~~~~~~~~~~~~--~~~~~~~~~~~~e~------~~~~~~-~~~~~~~~l~~~a~~~g~~v~ltG 227 (319)
.++..+.++... -.+.+.+.+..... +...+. -...+.-.+.+.+++.|+-+++.+
T Consensus 98 ~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~ 162 (355)
T TIGR03301 98 IPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDA 162 (355)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEe
Confidence 998888764311 12334433321000 000000 011233456677777888888775
Done!