Your job contains 1 sequence.
>020994
MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY
AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGS
NLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKER
IAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSI
LDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKV
DHPPHSVPNCSEPPHDQSN
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020994
(319 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 422 3.7e-48 2
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 449 1.9e-42 1
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 441 1.4e-41 1
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 430 2.0e-40 1
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 399 3.9e-37 1
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 381 3.1e-35 1
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 353 2.9e-32 1
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 295 1.5e-25 1
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 251 1.9e-21 1
UNIPROTKB|C9K0K2 - symbol:CPSF4 "Cleavage and polyadenyla... 91 6.4e-07 2
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 116 1.0e-06 2
POMBASE|SPAC227.08c - symbol:yth1 "mRNA cleavage and poly... 105 1.4e-05 2
UNIPROTKB|I3LCK9 - symbol:LOC100738395 "Uncharacterized p... 104 2.7e-05 3
UNIPROTKB|F1REX3 - symbol:LOC100518830 "Uncharacterized p... 105 3.7e-05 3
WB|WBGene00013319 - symbol:ccch-5 species:6239 "Caenorhab... 118 3.9e-05 1
UNIPROTKB|D4A905 - symbol:Cpsf4 "Cleavage and polyadenyla... 109 4.6e-05 2
UNIPROTKB|B7Z7B0 - symbol:CPSF4 "Cleavage and polyadenyla... 104 4.7e-05 2
UNIPROTKB|O95639 - symbol:CPSF4 "Cleavage and polyadenyla... 104 5.1e-05 3
UNIPROTKB|E1BV31 - symbol:CPSF4 "Uncharacterized protein"... 108 6.0e-05 2
WB|WBGene00009537 - symbol:ccch-2 species:6239 "Caenorhab... 113 0.00011 1
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 94 0.00013 2
UNIPROTKB|O19137 - symbol:CPSF4 "Cleavage and polyadenyla... 104 0.00019 2
RGD|620440 - symbol:Cpsf4 "cleavage and polyadenylation s... 104 0.00019 2
UNIPROTKB|H9KVA5 - symbol:CPSF4L "Putative cleavage and p... 91 0.00020 2
UNIPROTKB|C9JEV9 - symbol:CPSF4 "Cleavage and polyadenyla... 113 0.00020 1
MGI|MGI:1861602 - symbol:Cpsf4 "cleavage and polyadenylat... 113 0.00020 1
UNIPROTKB|E2RBK7 - symbol:CPSF4 "Uncharacterized protein"... 113 0.00021 1
UNIPROTKB|J9P398 - symbol:CPSF4 "Uncharacterized protein"... 104 0.00029 2
CGD|CAL0005897 - symbol:YTH1 species:5476 "Candida albica... 101 0.00030 2
UNIPROTKB|Q59T36 - symbol:YTH1 "mRNA 3'-end-processing pr... 101 0.00030 2
UNIPROTKB|H7C4T5 - symbol:MBNL1 "Muscleblind-like protein... 111 0.00030 2
UNIPROTKB|F1LPR3 - symbol:Mbnl1 "Protein Mbnl1" species:1... 114 0.00036 1
UNIPROTKB|C9JP00 - symbol:MBNL1 "Muscleblind-like protein... 111 0.00037 2
MGI|MGI:1928482 - symbol:Mbnl1 "muscleblind-like 1 (Droso... 115 0.00040 1
UNIPROTKB|Q5ZKW9 - symbol:MBNL1 "Muscleblind-like protein... 115 0.00046 1
UNIPROTKB|F1M9N4 - symbol:Mbnl1 "Protein Mbnl1" species:1... 114 0.00047 1
UNIPROTKB|F1NBC8 - symbol:MBNL1 "Muscleblind-like protein... 115 0.00049 1
UNIPROTKB|E2QSA8 - symbol:MBNL1 "Uncharacterized protein"... 114 0.00052 1
UNIPROTKB|Q9NR56 - symbol:MBNL1 "Muscleblind-like protein... 111 0.00052 2
UNIPROTKB|G3X6F9 - symbol:MBNL1 "Uncharacterized protein"... 114 0.00060 1
UNIPROTKB|E2QSC6 - symbol:MBNL1 "Uncharacterized protein"... 114 0.00063 1
UNIPROTKB|F6UUJ0 - symbol:MBNL1 "Uncharacterized protein"... 114 0.00064 1
UNIPROTKB|Q66KE3 - symbol:cpsf4 "Cleavage and polyadenyla... 101 0.00064 2
UNIPROTKB|Q6DJP7 - symbol:cpsf4 "Cleavage and polyadenyla... 101 0.00064 2
UNIPROTKB|F6UU15 - symbol:MBNL1 "Uncharacterized protein"... 114 0.00068 1
UNIPROTKB|F1SJM7 - symbol:MBNL1 "Uncharacterized protein"... 114 0.00068 1
UNIPROTKB|E2RBM0 - symbol:CPSF4 "Uncharacterized protein"... 91 0.00078 2
SGD|S000005975 - symbol:LEE1 "Zinc-finger protein of unkn... 111 0.00089 1
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 422 (153.6 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 101/263 (38%), Positives = 134/263 (50%)
Query: 38 PLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIV 97
P N + G S P++ L+YA L S R Q QSY+P++VSPSQG +
Sbjct: 161 PQPDNGHSTAYGMSSFPAADLRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFL 217
Query: 98 PAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPD 156
P GW YM A SN +Y+ +NQ G+ A M + A ++ L E DQP+
Sbjct: 218 PPQGWAPYM-----------AASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPE 266
Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
CR++MNTGTCKYG DCK+ HP RI+Q S I P LP+RPGQ C N+ YG CKFGP
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGP 326
Query: 217 TCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQAISATHSIETSPDASSKIPNWVQNSDA 276
C+FDHP YP HQ IS T + S S+ P+ + S
Sbjct: 327 NCKFDHPMLPYP-GLTMATSLPTPFASPVTTHQRISPTPNRSDSKSLSNGKPDVKKESS- 384
Query: 277 VSVQHQNPDMKNSTTKN-SDDSS 298
+ + PD N ++ S+D+S
Sbjct: 385 ---ETEKPD--NGEVQDLSEDAS 402
Score = 236 (88.1 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 50/106 (47%), Positives = 65/106 (61%)
Query: 1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
MR EK CPYY+RTG+C+FGVACKFHHPQP + G+++ + G S P++ L+Y
Sbjct: 134 MRLGEKPCPYYLRTGTCRFGVACKFHHPQPDN--------GHST--AYGMSSFPAADLRY 183
Query: 61 AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYM 106
A L S R Q QSY+P++VSPSQG +P GW YM
Sbjct: 184 ASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM 226
Score = 230 (86.0 bits), Expect = 3.4e-26, Sum P(2) = 3.4e-26
Identities = 43/90 (47%), Positives = 54/90 (60%)
Query: 146 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERI-AQSAASNIGPLGLPSRPGQAICS 204
+ LPER QPDC Y++ TG CKYG CK+HHPK+R AQ N+ +GLP R G+ C
Sbjct: 85 EELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNV--IGLPMRLGEKPCP 142
Query: 205 NYSMYGICKFGPTCRFDHPYA--GYPINYG 232
Y G C+FG C+F HP G+ YG
Sbjct: 143 YYLRTGTCRFGVACKFHHPQPDNGHSTAYG 172
Score = 190 (71.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 41/117 (35%), Positives = 63/117 (53%)
Query: 111 PLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNL---PERPDQPDCRYYMNTGTC 166
P+S T S+L+ S R+ + A +M + + L P+RP + DC++Y+ TG C
Sbjct: 4 PMSDTQHVQSSLV-SIRSSDKIEDAFRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLC 62
Query: 167 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
YG+ C+++HP + Q A L P R GQ C + G CK+GPTC++ HP
Sbjct: 63 GYGSSCRYNHPTH-LPQDVAYYKEEL--PERIGQPDCEYFLKTGACKYGPTCKYHHP 116
Score = 98 (39.6 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
R + C Y+++TG+CK+G CK+HHP+
Sbjct: 90 RIGQPDCEYFLKTGACKYGPTCKYHHPK 117
Score = 89 (36.4 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHP 28
R E+ C +Y+RTG C +G +C+++HP
Sbjct: 47 RPGERDCQFYLRTGLCGYGSSCRYNHP 73
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 97/236 (41%), Positives = 134/236 (56%)
Query: 1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
+R+ + C YY++TG CKFG+ CKFHHPQP+ GT +P AS SV QY
Sbjct: 135 VREGDNECSYYLKTGQCKFGITCKFHHPQPA--GTTVP-PPPASAPQFYPSVQSLMPDQY 191
Query: 61 AGSLPTWSLQRAPYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP--- 114
G P+ SL+ A L S +QG +Y P++++P G+VP PGW+ Y + P LSP
Sbjct: 192 GG--PSSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGAQ 245
Query: 115 -----TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 167
TS+ G + S+ G + + + Q PERP +P+C+YY+ TG CK
Sbjct: 246 HAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCK 305
Query: 168 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
+G CKFHHP++R+ A + P+GLP RPG C+ Y G CKFG TC+FDHP
Sbjct: 306 FGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361
Score = 211 (79.3 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 41/78 (52%), Positives = 50/78 (64%)
Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPL---GLPSRPGQAICSN 205
PER +P C++Y+ TGTCK+GA CKFHHPK A + S++ PL G P R G CS
Sbjct: 88 PERFGEPPCQFYLKTGTCKFGASCKFHHPKN--AGGSMSHV-PLNIYGYPVREGDNECSY 144
Query: 206 YSMYGICKFGPTCRFDHP 223
Y G CKFG TC+F HP
Sbjct: 145 YLKTGQCKFGITCKFHHP 162
Score = 211 (79.3 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 40/94 (42%), Positives = 51/94 (54%)
Query: 131 DLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIG 190
D G M L S + PERP PDC YYM TG C YG C+++HP++R S + +
Sbjct: 25 DTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRA--SVEATVR 82
Query: 191 PLG-LPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
G P R G+ C Y G CKFG +C+F HP
Sbjct: 83 ATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHP 116
Score = 114 (45.2 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 134 AGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
AG M + + P R +C YY+ TG CK+G CKFHHP+
Sbjct: 119 AGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHPQ 163
Score = 109 (43.4 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
R E C +Y++TG+CKFG +CKFHHP+
Sbjct: 90 RFGEPPCQFYLKTGTCKFGASCKFHHPK 117
Score = 96 (38.9 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 148 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQS-AASNI 189
LP RP C +Y+ G CK+G+ CKF HP I + +AS++
Sbjct: 332 LPLRPGVQRCTFYVQNGFCKFGSTCKFDHPMGTIRYNPSASSL 374
Score = 88 (36.0 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQP-SSLGTALPLTG 41
R C YYMRTG C +G C+++HP+ +S+ + TG
Sbjct: 45 RPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRATG 85
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 93/230 (40%), Positives = 131/230 (56%)
Query: 1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALP-LTGNASLGSMGSSVLPSSGL 58
+R E CPYYMR GSCK+G CKF+HP P+++G T P GN + S+G+ P +
Sbjct: 203 LRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNGV-SIGT-FSPKATF 260
Query: 59 QYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPA-PGWNTYMGNI-----GPL 112
Q S +WS R + GT ++P+++S + G+ P WN Y ++ G
Sbjct: 261 Q--ASSTSWSSPR------HVNGTSPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVF 312
Query: 113 SPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADC 172
SP++ + L+ +S + + H + A + PERPDQP+C YYM TG CK+ +C
Sbjct: 313 SPST---TYLMNNSSAETSMLLSQYRHQMPA--EEFPERPDQPECSYYMKTGDCKFKFNC 367
Query: 173 KFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
K+HHPK R+ + + GLP RP Q IC+ YS YGICKFGP CRFDH
Sbjct: 368 KYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417
Score = 191 (72.3 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 34/70 (48%), Positives = 43/70 (61%)
Query: 156 DCRYYMNTGTCKYGADCKFHH--PKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICK 213
DC+YY TG CKYG C+F+H PK +A + N LGLP RPG+ C Y G CK
Sbjct: 163 DCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNF--LGLPLRPGEVECPYYMRNGSCK 220
Query: 214 FGPTCRFDHP 223
+G C+F+HP
Sbjct: 221 YGAECKFNHP 230
Score = 168 (64.2 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 37/87 (42%), Positives = 48/87 (55%)
Query: 145 SQNL-PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI--GPLGLPSRPGQA 201
S+N+ P RP DC +YM TG+CK+G+ CKF+HP R Q A N + G
Sbjct: 103 SENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLI 162
Query: 202 ICSNYSMYGICKFGPTCRFDH--PYAG 226
C Y G CK+G TCRF+H P +G
Sbjct: 163 DCKYYFRTGGCKYGETCRFNHTIPKSG 189
Score = 123 (48.4 bits), Expect = 3.7e-16, Sum P(3) = 3.7e-16
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 148 LPERPDQPDCRYYMNTGTCKYGADCKFHHP 177
LP RP + +C YYM G+CKYGA+CKF+HP
Sbjct: 201 LPLRPGEVECPYYMRNGSCKYGAECKFNHP 230
Score = 108 (43.1 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 1 MRQDEKSCPYYMRTGSCKFGVACKFHHP 28
+R + C +YMRTGSCKFG +CKF+HP
Sbjct: 109 VRPGAEDCSFYMRTGSCKFGSSCKFNHP 136
Score = 92 (37.4 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 8 CPYYMRTGSCKFGVACKFHHPQPSS 32
C YY RTG CK+G C+F+H P S
Sbjct: 164 CKYYFRTGGCKYGETCRFNHTIPKS 188
Score = 78 (32.5 bits), Expect = 3.7e-16, Sum P(3) = 3.7e-16
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 195 PSRPGQAICSNYSMYGICKFGPTCRFDHP 223
P RP Q CS Y G CKF C++ HP
Sbjct: 344 PERPDQPECSYYMKTGDCKFKFNCKYHHP 372
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 89/241 (36%), Positives = 129/241 (53%)
Query: 1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
+R EK C Y+MRTG CKFG C++HHP P G P S G ++ PS Q
Sbjct: 144 LRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQQQQLSAGPTMYPSLQSQT 201
Query: 61 AGSLPTWSLQRA-PYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SPTS 116
S + + A P L S +Q Y +++ P G+VP GWN Y ++ + SP +
Sbjct: 202 VPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPP--GMVPYSGWNPYQASVSAMPSPGT 259
Query: 117 --IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA 170
G++ +Y S + +G +S Q P+RP+QP+C+Y+M TG CK+G
Sbjct: 260 QPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGT 319
Query: 171 DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPIN 230
C+FHHP E A AS + +GLP RPG C++++ +GICKFGP C+FDH ++
Sbjct: 320 SCRFHHPMEA-ASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLS 378
Query: 231 Y 231
Y
Sbjct: 379 Y 379
Score = 218 (81.8 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 141 LSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAAS--NIGPLGLPSRP 198
L + PER QP C+++M TGTCK+GA CK+HHP++ + + ++ +G P RP
Sbjct: 87 LRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRP 146
Query: 199 GQAICSNYSMYGICKFGPTCRFDHP 223
G+ CS + G CKFG TCR+ HP
Sbjct: 147 GEKECSYFMRTGQCKFGSTCRYHHP 171
Score = 215 (80.7 bits), Expect = 8.8e-16, P = 8.8e-16
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 146 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 205
+ PERPD+PDC YY+ TG C YG+ C+F+HP+ R P R GQ +C +
Sbjct: 46 ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQH 105
Query: 206 YSMYGICKFGPTCRFDHPYAG 226
+ G CKFG +C++ HP G
Sbjct: 106 FMRTGTCKFGASCKYHHPRQG 126
Score = 151 (58.2 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 49/194 (25%), Positives = 75/194 (38%)
Query: 119 GSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
G++ Y QG G G + +S + P RP + +C Y+M TG CK+G+ C++HHP
Sbjct: 115 GASCKYHHPRQG--GGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPV 172
Query: 179 ERIAQSAAS------NIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYG 232
Q+ + + GP PS Q + S+ YG+ P Y P YG
Sbjct: 173 PPGVQAPSQQQQQQLSAGPTMYPSLQSQTVPSS-QQYGVVLARPQL-LPGSYVQSPYGYG 230
Query: 233 XXXXXXXXXXXXXMN-HQA-ISATHSIETSPD-ASSKIPNWVQNSDAVSVQHQNPDMKNS 289
N +QA +SA S T P +S + S + P
Sbjct: 231 QMVLPPGMVPYSGWNPYQASVSAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGV 290
Query: 290 TTKNSDDSSKVDHP 303
+ K + + P
Sbjct: 291 SNKEQTFPQRPEQP 304
Score = 97 (39.2 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
R DE C YY+RTG C +G C+F+HP+
Sbjct: 51 RPDEPDCIYYLRTGVCGYGSRCRFNHPR 78
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 86/235 (36%), Positives = 129/235 (54%)
Query: 1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL-GTAL-PLTGNASLGSMGSSVLPSSGL 58
+R EK C YY+RTG CKFG+ C+F+HP P ++ G P ++ P+
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQS 206
Query: 59 QYAGSLPTWSL--QRAPYLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SP 114
Q S + L R +L+ S LQ Y P +V P G+VP GWN Y ++ + SP
Sbjct: 207 QSIPSSQQYGLVLTRPSFLTGSYLQSP--YGPPMVLPP-GMVPYSGWNPYQASLSAMPSP 263
Query: 115 TS--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 167
+ GS+ IY S G + +++S+ P+RPDQP+C+Y+M TG CK
Sbjct: 264 GTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCK 323
Query: 168 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
+G+ C++HHP + + + +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct: 324 FGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378
Score = 222 (83.2 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 148 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAAS--NIGPLGLPSRPGQAICSN 205
LPER P C+++M TGTCK+GA CK+HHP++ + + ++ LG P RPG+ CS
Sbjct: 97 LPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSY 156
Query: 206 YSMYGICKFGPTCRFDHP 223
Y G CKFG TCRF+HP
Sbjct: 157 YLRTGQCKFGLTCRFNHP 174
Score = 220 (82.5 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 146 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG-LPSRPGQAICS 204
++ PERPD+PDC YY+ TG C YG+ C+F+HP++R A G G LP R G +C
Sbjct: 49 ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVR-GEAGALPERMGHPVCQ 107
Query: 205 NYSMYGICKFGPTCRFDHPYAG 226
++ G CKFG +C++ HP G
Sbjct: 108 HFMRTGTCKFGASCKYHHPRQG 129
Score = 124 (48.7 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 119 GSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP 177
G++ Y QG G G + +S S P RP + +C YY+ TG CK+G C+F+HP
Sbjct: 118 GASCKYHHPRQG--GGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHP 174
Score = 116 (45.9 bits), Expect = 0.00051, P = 0.00051
Identities = 39/129 (30%), Positives = 58/129 (44%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPS-SGLQY 60
R D+ C Y+MRTG CKFG +C++HHP + P TG L S+G + P + +
Sbjct: 307 RPDQPECQYFMRTGDCKFGSSCRYHHP----VDAVPPKTGIV-LSSIGLPLRPGVAQCTH 361
Query: 61 AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGS 120
A + + SY P S + V AP Y P+ +S++GS
Sbjct: 362 FAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPV-AP----Y-----PIGSSSLSGS 411
Query: 121 NLIYSSRNQ 129
+ SS N+
Sbjct: 412 SAPVSSSNE 420
Score = 109 (43.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHP-QPSSLGTALPLTGNASLGSMGSSVLP 54
R C ++MRTG+CKFG +CK+HHP Q G+ P+ SL +G + P
Sbjct: 100 RMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPV----SLSYLGYPLRP 149
Score = 97 (39.2 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
R DE C YY+RTG C +G C+F+HP+
Sbjct: 54 RPDEPDCIYYLRTGVCGYGSRCRFNHPR 81
Score = 91 (37.1 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 186 ASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYG 232
+SN P RP Q C + G CKFG +CR+ HP P G
Sbjct: 296 SSNSTSKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTG 342
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
Identities = 85/225 (37%), Positives = 116/225 (51%)
Query: 1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
+R +E C Y++RTG CKFG CKF+HPQP +P +G S +S + S Q
Sbjct: 130 LRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRWQD 189
Query: 61 AGSLPTWSLQRAPYLSSRLQGTQSYMPLI--VSPSQGIVPAPGWNTYMGNIGPLSPTSIA 118
S + + P +QG Y + VSPS G + N S +
Sbjct: 190 PSSYASLIM---PQGVVPVQGWNPYSGQLGSVSPS-GTGNDQNYRNLQQNETIESGSQSQ 245
Query: 119 GSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
GS +S N G + L + PERP QP+C++YM TG CK+G CKFHHP+
Sbjct: 246 GS---FSGYNPGSSVPLGGYYALPRENV-FPERPGQPECQFYMKTGDCKFGTVCKFHHPR 301
Query: 179 ERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
+R A + +GLP RPG+ +C Y+ YGICKFGP+C+FDHP
Sbjct: 302 DRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346
Score = 220 (82.5 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 35/75 (46%), Positives = 48/75 (64%)
Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 208
PER QP+C YY+ TGTCK+G CKFHHP+ + + ++ LG P R + C+ +
Sbjct: 83 PERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLR 142
Query: 209 YGICKFGPTCRFDHP 223
G CKFG TC+F+HP
Sbjct: 143 TGHCKFGGTCKFNHP 157
Score = 206 (77.6 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 38/90 (42%), Positives = 54/90 (60%)
Query: 137 QMHILSASSQ---NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG 193
QM++ S + + PERP +PDC YY+ TG C++G+ C+F+HP++R A + +
Sbjct: 23 QMNLSSDETMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-E 81
Query: 194 LPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
P R GQ C Y G CKFG TC+F HP
Sbjct: 82 YPERIGQPECEYYLKTGTCKFGVTCKFHHP 111
Score = 169 (64.5 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 66/234 (28%), Positives = 99/234 (42%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYA 61
R + C YY++TG+CKFGV CKFHHP+ + G A G SL +G L S+ + A
Sbjct: 85 RIGQPECEYYLKTGTCKFGVTCKFHHPR-NKAGIA----GRVSLNMLGYP-LRSNEVDCA 138
Query: 62 GSLPTWSLQ---RAPYLSSRLQGTQSYMPLIVSPSQ-----GIVPAPGW---NTYMGNIG 110
L T + + + Q T +P S + +P W ++Y I
Sbjct: 139 YFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRWQDPSSYASLIM 198
Query: 111 PLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA 170
P + G N YS G LG+ + + + QN Q + + +G+ G+
Sbjct: 199 PQGVVPVQGWNP-YS----GQLGSVSPSG--TGNDQNY-RNLQQNET---IESGSQSQGS 247
Query: 171 DCKFHHPKERIAQSAASNIGPLGL-PSRPGQAICSNYSMYGICKFGPTCRFDHP 223
++ P + + + P RPGQ C Y G CKFG C+F HP
Sbjct: 248 FSGYN-PGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHP 300
Score = 101 (40.6 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL 33
R E C YY+RTG C+FG C+F+HP+ L
Sbjct: 40 RPGEPDCSYYIRTGLCRFGSTCRFNHPRDREL 71
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 82/244 (33%), Positives = 125/244 (51%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSG-LQY 60
R + C +Y++TG+CKFGV CKFHHP+ + G + G+ S+ + + P+ Y
Sbjct: 87 RIGQPECEFYLKTGTCKFGVTCKFHHPR-NKAG----IDGSVSVNVLSYPLRPNEDDCSY 141
Query: 61 ---AGSLP---TWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIV--PAPGWN--TYMGNIG 110
G T S+ L + P + S Q + P+ W+ +++ N
Sbjct: 142 FLRIGQCKFGGTCKFNHPQTQSTNLMVSVRGSP-VYSALQSLTGQPSYSWSRTSFVANPP 200
Query: 111 PLS-PTSIAGSNL--IYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMNTGTC 166
L P+ A + ++SS G + + +N+ PERP QP+C++YM TG C
Sbjct: 201 RLQDPSGFASGSQGGLFSSGFHS--GNSVPLGFYALPRENVFPERPGQPECQFYMKTGDC 258
Query: 167 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226
K+G CKFHHP++R + +GLP RPG+ +C YS YGICKFGP+C+FDHP
Sbjct: 259 KFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRV 318
Query: 227 YPIN 230
+ N
Sbjct: 319 FTYN 322
Score = 222 (83.2 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 35/75 (46%), Positives = 48/75 (64%)
Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 208
PER QP+C +Y+ TGTCK+G CKFHHP+ + + ++ L P RP + CS +
Sbjct: 85 PERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLR 144
Query: 209 YGICKFGPTCRFDHP 223
G CKFG TC+F+HP
Sbjct: 145 IGQCKFGGTCKFNHP 159
Score = 195 (73.7 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 35/75 (46%), Positives = 45/75 (60%)
Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 208
PER +PDC YY+ TG C++G+ C+F+HP +R A + I P R GQ C Y
Sbjct: 40 PERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKG-EYPERIGQPECEFYLK 98
Query: 209 YGICKFGPTCRFDHP 223
G CKFG TC+F HP
Sbjct: 99 TGTCKFGVTCKFHHP 113
Score = 188 (71.2 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 63/200 (31%), Positives = 88/200 (44%)
Query: 1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
+R +E C Y++R G CKFG CKF+HPQ S N + GS V S LQ
Sbjct: 132 LRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQS 181
Query: 61 AGSLPTWSLQRAPYLSS--RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA 118
P++S R ++++ RLQ + S SQG + + G+++ GN PL ++
Sbjct: 182 LTGQPSYSWSRTSFVANPPRLQDPSGF----ASGSQGGLFSSGFHS--GNSVPLGFYALP 235
Query: 119 GSNLIYSSRNQ---------GD--LGAGAQMHI----------LSASSQNLPERPDQPDC 157
N+ Q GD G + H SS LP RP +P C
Sbjct: 236 RENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLC 295
Query: 158 RYYMNTGTCKYGADCKFHHP 177
+Y G CK+G CKF HP
Sbjct: 296 VFYSRYGICKFGPSCKFDHP 315
Score = 101 (40.6 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL 33
R E C YY+RTG C+FG C+F+HP L
Sbjct: 42 RHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKL 73
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 295 (108.9 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 83/248 (33%), Positives = 116/248 (46%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQ----PSS---LGTALPLTGNASLGSMGSSVLP 54
R E C +YM+TG CKFG++CKFHHP+ PSS +G+++ LT +
Sbjct: 268 RPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFT 327
Query: 55 SSGLQYAGSLPTWSLQ-RAP-YL---SSRLQGTQSYMPLIVSPSQ-GIVP-APGWNTYM- 106
+ + LP S + P YL S + T Y P + +P A G N +
Sbjct: 328 PALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYN----HPERTAFIPQAAGVNYSLV 383
Query: 107 -GNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGT 165
N L+ + + Y + Q LG ++SA+ P+RP Q +C YYM TG
Sbjct: 384 SSNTANLNLGLVTPATSFYQTLTQPTLG------VISAT---YPQRPGQSECDYYMKTGE 434
Query: 166 CKYGADCKFHHPKERIA-------QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTC 218
CK+G CKFHHP +R++ Q + G P R G C Y G CK+G TC
Sbjct: 435 CKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATC 494
Query: 219 RFDHPYAG 226
+FDHP G
Sbjct: 495 KFDHPPPG 502
Score = 216 (81.1 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 145 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICS 204
++ PERP +PDC YY+ T CKYG+ CKF+HP+E A S + LP RP + +C+
Sbjct: 219 NEEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDS---LPERPSEPMCT 275
Query: 205 NYSMYGICKFGPTCRFDHP 223
Y G CKFG +C+F HP
Sbjct: 276 FYMKTGKCKFGLSCKFHHP 294
Score = 162 (62.1 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 141 LSASSQN-LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGP-LGLPSRP 198
+S +Q+ LPERP +P C +YM TG CK+G CKFHHPK+ S++ +IG +GL S P
Sbjct: 257 VSVETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEP 316
Score = 153 (58.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHP----KERIAQSAASNIGPLG-LPSRPGQAIC 203
P+R + DC +YM T TCK+G C+F HP + I + + P P RPG+ C
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDC 231
Query: 204 SNYSMYGICKFGPTCRFDHP 223
Y CK+G C+F+HP
Sbjct: 232 PYYIKTQRCKYGSKCKFNHP 251
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL 33
R+ +CPYYM+TG+CK+G CKF HP P +
Sbjct: 473 REGALNCPYYMKTGTCKYGATCKFDHPPPGEV 504
Score = 116 (45.9 bits), Expect = 0.00061, P = 0.00061
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 1 MRQDEKSCPYYMRTGSCKFGVACKFHHPQ-----PSSLGTALPL-TGNASLGSMGSSVLP 54
+R E CP+Y++TGSCK+G C+++HP+ P + G L + N + ++G V P
Sbjct: 339 VRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGL-VTP 397
Query: 55 SSGLQYAGSLPTWSLQRAPY 74
++ + PT + A Y
Sbjct: 398 ATSFYQTLTQPTLGVISATY 417
Score = 99 (39.9 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
R E CPYY++T CK+G CKF+HP+
Sbjct: 225 RPGEPDCPYYIKTQRCKYGSKCKFNHPR 252
Score = 96 (38.9 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHHP 28
R EK C +YM+T +CKFG +C+F HP
Sbjct: 174 RAGEKDCTHYMQTRTCKFGESCRFDHP 200
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 40/79 (50%), Positives = 51/79 (64%)
Query: 144 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 203
S + PERP +P+C YY+ TG C +CK+HHPK + GLP RPGQAIC
Sbjct: 2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61
Query: 204 SNYSMYGICKFGPTCRFDH 222
+YS +GIC+ GPTC+FDH
Sbjct: 62 PHYSRFGICRSGPTCKFDH 80
>UNIPROTKB|C9K0K2 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HOGENOM:HOG000212457
HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI01014332
ProteinModelPortal:C9K0K2 SMR:C9K0K2 STRING:C9K0K2
Ensembl:ENST00000412686 ArrayExpress:C9K0K2 Bgee:C9K0K2
Uniprot:C9K0K2
Length = 112
Score = 91 (37.1 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 41 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 98
Query: 208 MYGICKFGPTCRF 220
+ G C GP+C+F
Sbjct: 99 LVGFCPEGPSCKF 111
Score = 48 (22.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 15 CKHWLR-GLCKKGDQCEFLH 33
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 116 (45.9 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 37/136 (27%), Positives = 48/136 (35%)
Query: 138 MHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPS- 196
+H L P R + P CR + G C +G C F H + A PS
Sbjct: 121 VHNLKEQRPIRPRRRNVP-CRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQ 179
Query: 197 ----RPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGXXXXXXXXXXXXXMNHQAIS 252
+P A+C +S +G C +G CRF H G P N +IS
Sbjct: 180 SQEWKPRGALCRTFSAFGFCLYGTRCRFQH---GLPNTIKGHNANHTSWPQQMTNGGSIS 236
Query: 253 ATHSIETSPDASSKIP 268
TSP S P
Sbjct: 237 PISDTCTSPSPPSSSP 252
Score = 61 (26.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 2 RQDEKSCPYYMRTGSCKFGVACKFHH 27
R + C Y TG+CK+ C+F H
Sbjct: 59 RYKTELCSRYAETGTCKYAERCQFAH 84
Score = 46 (21.3 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C Y G C +G C F H
Sbjct: 103 CRTYHTAGYCVYGTRCLFVH 122
>POMBASE|SPAC227.08c [details] [associations]
symbol:yth1 "mRNA cleavage and polyadenylation
specificity factor complex Yth1" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0006378 "mRNA polyadenylation"
evidence=IC] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
PomBase:SPAC227.08c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006378
GO:GO:0003723 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
KO:K14404 OrthoDB:EOG4PG99D PIR:T50164 RefSeq:NP_592962.1
ProteinModelPortal:Q9UTD1 SMR:Q9UTD1 STRING:Q9UTD1
EnsemblFungi:SPAC227.08c.1 GeneID:2541506 KEGG:spo:SPAC227.08c
NextBio:20802605 Uniprot:Q9UTD1
Length = 170
Score = 105 (42.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 27/83 (32%), Positives = 37/83 (44%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQSAASNIG--PLGLPSRPGQAI-----CSN 205
P C +Y G C G +C + H P +++ A N+G PLG P G+ + C
Sbjct: 80 PPCHFYAERGWCSNGEECLYLHLDPSKQVGVCAWYNMGFCPLG-PICRGKHVRKPRPCPK 138
Query: 206 YSMYGICKFGPTCRFDHPYAGYP 228
Y + G C GP C HP P
Sbjct: 139 Y-LAGFCPLGPNCPDAHPKHSEP 160
Score = 47 (21.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C F H
Sbjct: 54 CKHWLR-GLCKKGEQCDFLH 72
>UNIPROTKB|I3LCK9 [details] [associations]
symbol:LOC100738395 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 OMA:PLDQVTC EMBL:FP103031
Ensembl:ENSSSCT00000031676 Uniprot:I3LCK9
Length = 243
Score = 104 (41.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 68 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 125
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP+C+F HP P+
Sbjct: 126 LVGFCPEGPSCKFMHPRFELPM 147
Score = 48 (22.0 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 42 CKHWLR-GLCKKGDQCEFLH 60
Score = 39 (18.8 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 301 DHPPHSVPNCSEPPHDQSN 319
+ PP +P ++PP QSN
Sbjct: 151 EQPP--LPQQTQPPAKQSN 167
>UNIPROTKB|F1REX3 [details] [associations]
symbol:LOC100518830 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 KO:K14404 EMBL:FP102617
RefSeq:XP_003124350.1 Ensembl:ENSSSCT00000008355 GeneID:100518830
KEGG:ssc:100518830 OMA:MQDIVAS Uniprot:F1REX3
Length = 269
Score = 105 (42.0 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 26/82 (31%), Positives = 37/82 (45%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQ-----SAASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I + GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDARFCKHGPLCRHRHTRRVICVNY- 151
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 48 (22.0 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH 86
Score = 39 (18.8 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 301 DHPPHSVPNCSEPPHDQSN 319
+ PP +P ++PP QSN
Sbjct: 177 EQPP--LPQQTQPPAKQSN 193
>WB|WBGene00013319 [details] [associations]
symbol:ccch-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0009792 EMBL:Z99281 GO:GO:0008270 GO:GO:0000003
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262
PIR:T27239 RefSeq:NP_502805.1 ProteinModelPortal:O18251 SMR:O18251
STRING:O18251 EnsemblMetazoa:Y57G11C.25 GeneID:178412
KEGG:cel:CELE_Y57G11C.25 UCSC:Y57G11C.25 CTD:178412
WormBase:Y57G11C.25 HOGENOM:HOG000114059 InParanoid:O18251
NextBio:901036 Uniprot:O18251
Length = 199
Score = 118 (46.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
C+ + T C YG CKF H E + Q N+G + P +C N+S G CK+G
Sbjct: 74 CKTFQLTKACSYGEQCKFAHSVEEL-QLKHQNLG-INNPKYK-TVLCDNFSTTGHCKYGT 130
Query: 217 TCRFDH 222
C+F H
Sbjct: 131 KCQFIH 136
>UNIPROTKB|D4A905 [details] [associations]
symbol:Cpsf4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000009627
OMA:PLDQVTC OrthoDB:EOG4KH2VQ IPI:IPI00358639
Ensembl:ENSRNOT00000038958 Uniprot:D4A905
Length = 243
Score = 109 (43.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 27/82 (32%), Positives = 37/82 (45%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL R + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRRTRRVICVNY- 151
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 48 (22.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH 86
>UNIPROTKB|B7Z7B0 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000212457
HOVERGEN:HBG051108 OrthoDB:EOG4KH2VQ UniGene:Hs.489287
HGNC:HGNC:2327 EMBL:AC073063 EMBL:AK301745 IPI:IPI00924476
SMR:B7Z7B0 STRING:B7Z7B0 Ensembl:ENST00000441580 UCSC:uc011kix.2
Uniprot:B7Z7B0
Length = 191
Score = 104 (41.7 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 41 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 98
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP+C+F HP P+
Sbjct: 99 LVGFCPEGPSCKFMHPRFELPM 120
Score = 48 (22.0 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 15 CKHWLR-GLCKKGDQCEFLH 33
>UNIPROTKB|O95639 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0019048
"virus-host interaction" evidence=TAS] [GO:0019054 "modulation by
virus of host cellular process" evidence=TAS] [GO:0019058 "viral
infectious cycle" evidence=TAS] [GO:0046778 "modification by virus
of host mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0005739 Reactome:REACT_116125
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
EMBL:CH236956 EMBL:CH471091 GO:GO:0019058 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
HOVERGEN:HBG051108 CTD:10898 KO:K14404 OMA:PLDQVTC
OrthoDB:EOG4KH2VQ EMBL:U79569 EMBL:CR542161 EMBL:EF191081
EMBL:BC003101 EMBL:BC050738 IPI:IPI00009137 IPI:IPI00029707
IPI:IPI00375469 RefSeq:NP_001075028.1 RefSeq:NP_006684.1
UniGene:Hs.489287 PDB:2D9N PDB:2RHK PDBsum:2D9N PDBsum:2RHK
ProteinModelPortal:O95639 SMR:O95639 DIP:DIP-48675N IntAct:O95639
MINT:MINT-1429837 STRING:O95639 PhosphoSite:O95639 PaxDb:O95639
PRIDE:O95639 DNASU:10898 Ensembl:ENST00000292476
Ensembl:ENST00000436336 GeneID:10898 KEGG:hsa:10898 UCSC:uc003uqi.3
UCSC:uc003uqj.3 UCSC:uc003uqk.3 GeneCards:GC07P099036
HGNC:HGNC:2327 HPA:HPA049094 MIM:603052 neXtProt:NX_O95639
PharmGKB:PA26844 InParanoid:O95639 PhylomeDB:O95639
EvolutionaryTrace:O95639 GenomeRNAi:10898 NextBio:41385
ArrayExpress:O95639 Bgee:O95639 CleanEx:HS_CPSF4
Genevestigator:O95639 GermOnline:ENSG00000160917 GO:GO:0046778
Uniprot:O95639
Length = 269
Score = 104 (41.7 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 48 (22.0 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH 86
Score = 39 (18.8 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 301 DHPPHSVPNCSEPPHDQSN 319
+ PP +P ++PP QSN
Sbjct: 177 EQPP--LPQQTQPPAKQSN 193
>UNIPROTKB|E1BV31 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AADN02023770 IPI:IPI00572429 RefSeq:XP_414800.1
UniGene:Gga.12217 Ensembl:ENSGALT00000007510 GeneID:416494
KEGG:gga:416494 NextBio:20819939 Uniprot:E1BV31
Length = 243
Score = 108 (43.1 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 27/82 (32%), Positives = 36/82 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GPTC+F HP P+
Sbjct: 152 LVGFCPEGPTCKFMHPRFELPM 173
Score = 48 (22.0 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH 86
>WB|WBGene00009537 [details] [associations]
symbol:ccch-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0009792
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5063
GeneTree:ENSGT00530000063262 EMBL:Z82267 HOGENOM:HOG000114059
PIR:T21961 RefSeq:NP_502931.1 ProteinModelPortal:O45491 SMR:O45491
IntAct:O45491 STRING:O45491 EnsemblMetazoa:F38C2.5 GeneID:178454
KEGG:cel:CELE_F38C2.5 UCSC:F38C2.5 CTD:178454 WormBase:F38C2.5
InParanoid:O45491 NextBio:901202 Uniprot:O45491
Length = 186
Score = 113 (44.8 bits), Expect = 0.00011, P = 0.00011
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
C+ + T C YG CKF H E + Q N G + P +C N+S G CK+G
Sbjct: 78 CKTFQLTRACSYGEQCKFAHSVEEL-QLKQKNRG-VNHPKYK-TVLCDNFSRTGHCKYGT 134
Query: 217 TCRFDH 222
C+F H
Sbjct: 135 KCQFIH 140
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 94 (38.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASN-------IGPLGLPSRPGQAICSNYS 207
P+C+ + +G C G DC + H +E+ + +GPL + +C Y
Sbjct: 118 PECQSFSRSGYCPNGDDCLYQHVREQARLPPCEHYDQGFCPLGPLCAKRHVRRRLCPYY- 176
Query: 208 MYGICKFGPTCRFDHP 223
+ G C GP C HP
Sbjct: 177 VAGFCPEGPNCANAHP 192
Score = 62 (26.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 26/81 (32%), Positives = 33/81 (40%)
Query: 4 DEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPL-TGNASLGSMGSSVLPS--SGLQY 60
D C Y G C G AC HP PS + T+ +G A + GS V GL
Sbjct: 43 DVPVCKAYSE-GHCPLGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCK 101
Query: 61 AGS----LPTWSLQRAPYLSS 77
G L ++L+R P S
Sbjct: 102 KGMKCEYLHEYNLRRMPECQS 122
>UNIPROTKB|O19137 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 HSSP:P47974
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 EMBL:U96448
IPI:IPI00715166 RefSeq:NP_776367.1 UniGene:Bt.55595
ProteinModelPortal:O19137 SMR:O19137 STRING:O19137
Ensembl:ENSBTAT00000002701 GeneID:280875 KEGG:bta:280875 CTD:10898
GeneTree:ENSGT00390000009627 InParanoid:O19137 KO:K14404
OMA:PLDQVTC OrthoDB:EOG4KH2VQ NextBio:20805014 Uniprot:O19137
Length = 243
Score = 104 (41.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 48 (22.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH 86
>RGD|620440 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor 4"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
HSSP:P47974 GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:BC089824 IPI:IPI00553898 RefSeq:NP_001012351.1
UniGene:Rn.104788 ProteinModelPortal:Q5FVR7 SMR:Q5FVR7
Ensembl:ENSRNOT00000042474 GeneID:304277 KEGG:rno:304277
InParanoid:Q5FVR7 NextBio:652764 ArrayExpress:Q5FVR7
Genevestigator:Q5FVR7 GermOnline:ENSRNOG00000025217 Uniprot:Q5FVR7
Length = 243
Score = 104 (41.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 48 (22.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH 86
>UNIPROTKB|H9KVA5 [details] [associations]
symbol:CPSF4L "Putative cleavage and
polyadenylation-specificity factor subunit 4-like protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC087301 HGNC:HGNC:33632
ProteinModelPortal:H9KVA5 SMR:H9KVA5 PRIDE:H9KVA5
Ensembl:ENST00000397671 Bgee:H9KVA5 Uniprot:H9KVA5
Length = 152
Score = 91 (37.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/76 (30%), Positives = 31/76 (40%)
Query: 155 PDCRYYMNTGTCKYGADCKFHHPKERIA--------QSAASNIGPLGLPSRPGQAICSNY 206
P+C +Y G C +C F H K Q + GPL + +C NY
Sbjct: 30 PECYFYSKFGDCS-NKECSFLHVKPAFKSQDCPWYDQGFCKDAGPLCKYRHVPRIMCLNY 88
Query: 207 SMYGICKFGPTCRFDH 222
+ G C GP C+F H
Sbjct: 89 -LVGFCPEGPKCQFAH 103
Score = 51 (23.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G CKF H
Sbjct: 4 CKHWLR-GLCKKGDHCKFLH 22
>UNIPROTKB|C9JEV9 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000212457 HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI00927478
ProteinModelPortal:C9JEV9 SMR:C9JEV9 STRING:C9JEV9
Ensembl:ENST00000451876 ArrayExpress:C9JEV9 Bgee:C9JEV9
Uniprot:C9JEV9
Length = 211
Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 213
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 214 FGPTCRFDHPYAGYPI 229
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>MGI|MGI:1861602 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor
4" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
MGI:MGI:1861602 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:AK046064 EMBL:AF033201 EMBL:BC057067 IPI:IPI00309761
IPI:IPI00380450 IPI:IPI01027761 RefSeq:NP_848671.1
UniGene:Mm.196884 ProteinModelPortal:Q8BQZ5 SMR:Q8BQZ5
STRING:Q8BQZ5 PhosphoSite:Q8BQZ5 PaxDb:Q8BQZ5 PRIDE:Q8BQZ5
Ensembl:ENSMUST00000070487 GeneID:54188 KEGG:mmu:54188
UCSC:uc009amj.1 ChiTaRS:CPSF4 NextBio:311022 Bgee:Q8BQZ5
CleanEx:MM_CPSF4 Genevestigator:Q8BQZ5
GermOnline:ENSMUSG00000029625 Uniprot:Q8BQZ5
Length = 211
Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 213
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 214 FGPTCRFDHPYAGYPI 229
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>UNIPROTKB|E2RBK7 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 GeneTree:ENSGT00390000009627
EMBL:AAEX03004276 Ensembl:ENSCAFT00000023892 Uniprot:E2RBK7
Length = 212
Score = 113 (44.8 bits), Expect = 0.00021, P = 0.00021
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 213
C++++ G CK G C+F H + S GPL + IC NY + G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125
Query: 214 FGPTCRFDHPYAGYPI 229
GP+C+F HP P+
Sbjct: 126 EGPSCKFMHPRFELPM 141
>UNIPROTKB|J9P398 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AAEX03004276 RefSeq:XP_850149.1 ProteinModelPortal:J9P398
Ensembl:ENSCAFT00000043832 GeneID:489859 KEGG:cfa:489859
Uniprot:J9P398
Length = 269
Score = 104 (41.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP+C+F HP P+
Sbjct: 152 LVGFCPEGPSCKFMHPRFELPM 173
Score = 48 (22.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH 86
>CGD|CAL0005897 [details] [associations]
symbol:YTH1 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 CGD:CAL0005897
GO:GO:0005634 GO:GO:0042493 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 eggNOG:COG5084 KO:K14404
EMBL:AACQ01000145 EMBL:AACQ01000144 RefSeq:XP_712810.1
RefSeq:XP_712839.1 ProteinModelPortal:Q59T36 SMR:Q59T36
STRING:Q59T36 GeneID:3645540 GeneID:3645572 KEGG:cal:CaO19.14170
KEGG:cal:CaO19.6881 Uniprot:Q59T36
Length = 215
Score = 101 (40.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 23/76 (30%), Positives = 34/76 (44%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQSAASNIG-----PLGLPSRPGQAICSNYS 207
P+C +Y G C ++C + H P+ +I + N G P + +C Y
Sbjct: 97 PECLFYSKNGYCTQTSECLYLHVDPQSKIPECLNYNQGFCSEGPNCKNRHVRRVLCPLY- 155
Query: 208 MYGICKFGPTCRFDHP 223
+YG C GP C F HP
Sbjct: 156 LYGFCPKGPECEFTHP 171
Score = 47 (21.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 71 CKHWLR-GLCKKGDHCEFLH 89
>UNIPROTKB|Q59T36 [details] [associations]
symbol:YTH1 "mRNA 3'-end-processing protein YTH1"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 CGD:CAL0005897 GO:GO:0005634 GO:GO:0042493
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 KO:K14404 EMBL:AACQ01000145 EMBL:AACQ01000144
RefSeq:XP_712810.1 RefSeq:XP_712839.1 ProteinModelPortal:Q59T36
SMR:Q59T36 STRING:Q59T36 GeneID:3645540 GeneID:3645572
KEGG:cal:CaO19.14170 KEGG:cal:CaO19.6881 Uniprot:Q59T36
Length = 215
Score = 101 (40.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 23/76 (30%), Positives = 34/76 (44%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQSAASNIG-----PLGLPSRPGQAICSNYS 207
P+C +Y G C ++C + H P+ +I + N G P + +C Y
Sbjct: 97 PECLFYSKNGYCTQTSECLYLHVDPQSKIPECLNYNQGFCSEGPNCKNRHVRRVLCPLY- 155
Query: 208 MYGICKFGPTCRFDHP 223
+YG C GP C F HP
Sbjct: 156 LYGFCPKGPECEFTHP 171
Score = 47 (21.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 71 CKHWLR-GLCKKGDHCEFLH 89
>UNIPROTKB|H7C4T5 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 EMBL:AC026347 EMBL:AC106722 HGNC:HGNC:6923
ChiTaRS:MBNL1 ProteinModelPortal:H7C4T5 Ensembl:ENST00000464596
Uniprot:H7C4T5
Length = 329
Score = 111 (44.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 57/209 (27%), Positives = 86/209 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 65 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 118
Query: 82 TQSYMPLIVSPSQGI-VPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQM 138
V+PS A +N Y+G + P L P I + + + N G + A A
Sbjct: 119 --------VAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA-- 168
Query: 139 HILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPS 196
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 ---AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT------- 216
Query: 197 RPGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 217 ---VTVCMDY-IKGRCS-REKCKYFHPPA 240
Score = 43 (20.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 8 CPYYMRTGSC-KFGVACKFHHPQPS 31
C + R G+C + CKF HP S
Sbjct: 18 CREFQR-GTCSRPDTECKFAHPSKS 41
>UNIPROTKB|F1LPR3 [details] [associations]
symbol:Mbnl1 "Protein Mbnl1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 IPI:IPI00567436 Ensembl:ENSRNOT00000018867
ArrayExpress:F1LPR3 Uniprot:F1LPR3
Length = 283
Score = 114 (45.2 bits), Expect = 0.00036, P = 0.00036
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 8 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 61
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 62 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 110
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 111 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 158
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 159 --VTVCMDY-IKGRCS-REKCKYFHPPA 182
>UNIPROTKB|C9JP00 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 EMBL:AC026347 EMBL:AC106722 HGNC:HGNC:6923
HOGENOM:HOG000230928 ChiTaRS:MBNL1 IPI:IPI00945690
ProteinModelPortal:C9JP00 SMR:C9JP00 STRING:C9JP00
Ensembl:ENST00000498502 ArrayExpress:C9JP00 Bgee:C9JP00
Uniprot:C9JP00
Length = 348
Score = 111 (44.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 57/209 (27%), Positives = 86/209 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGI-VPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQM 138
V+PS A +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA-- 169
Query: 139 HILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPS 196
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 170 ---AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT------- 217
Query: 197 RPGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 218 ---VTVCMDY-IKGRCS-REKCKYFHPPA 241
Score = 43 (20.2 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 8 CPYYMRTGSC-KFGVACKFHHPQPS 31
C + R G+C + CKF HP S
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKS 42
>MGI|MGI:1928482 [details] [associations]
symbol:Mbnl1 "muscleblind-like 1 (Drosophila)" species:10090
"Mus musculus" [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO;IMP] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006376 "mRNA splice site
selection" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007519 "skeletal muscle tissue development"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO] [GO:0045445 "myoblast differentiation"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:1928482 GO:GO:0005634 GO:GO:0007399 GO:GO:0046872
GO:GO:0008270 GO:GO:0001701 GO:GO:0030326 GO:GO:0003725
GO:GO:0045445 GO:GO:0010494 GO:GO:0007519 GO:GO:0000380
GO:GO:0006376 GO:GO:0000381 eggNOG:NOG241142 KO:K14943 CTD:4154
HOVERGEN:HBG006999 HOGENOM:HOG000230928 EMBL:AF231110
IPI:IPI00466710 RefSeq:NP_001240637.1 UniGene:Mm.255723
ProteinModelPortal:Q9JKP5 SMR:Q9JKP5 STRING:Q9JKP5
PhosphoSite:Q9JKP5 PaxDb:Q9JKP5 PRIDE:Q9JKP5 GeneID:56758
KEGG:mmu:56758 UCSC:uc008pjh.1 CleanEx:MM_MBNL1
Genevestigator:Q9JKP5 GermOnline:ENSMUSG00000027763 Uniprot:Q9JKP5
Length = 341
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATSASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
>UNIPROTKB|Q5ZKW9 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 eggNOG:NOG241142
GeneTree:ENSGT00390000001586 KO:K14943 EMBL:AJ719965
IPI:IPI00587570 RefSeq:NP_001026493.1 UniGene:Gga.4840
ProteinModelPortal:Q5ZKW9 SMR:Q5ZKW9 STRING:Q5ZKW9
Ensembl:ENSGALT00000016870 GeneID:425033 KEGG:gga:425033 CTD:4154
HOVERGEN:HBG006999 OrthoDB:EOG4BRWN5 NextBio:20827282
ArrayExpress:Q5ZKW9 Uniprot:Q5ZKW9
Length = 369
Score = 115 (45.5 bits), Expect = 0.00046, P = 0.00046
Identities = 58/208 (27%), Positives = 89/208 (42%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPGLVPAEILPTAPMLVAGNPGVPVPAAA--- 168
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP A SA + +
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHP----ADSAMIDTNDNTV--- 217
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 218 ---TVCMDY-IKGRCS-REKCKYFHPPA 240
>UNIPROTKB|F1M9N4 [details] [associations]
symbol:Mbnl1 "Protein Mbnl1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0008270 GO:GO:0003725 GO:GO:0010494 GO:GO:0007519
GO:GO:0006376 GO:GO:0000381 GeneTree:ENSGT00390000001586
IPI:IPI00373207 Ensembl:ENSRNOT00000036808 ArrayExpress:F1M9N4
Uniprot:F1M9N4
Length = 323
Score = 114 (45.2 bits), Expect = 0.00047, P = 0.00047
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 8 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 61
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 62 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 110
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 111 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 158
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 159 --VTVCMDY-IKGRCS-REKCKYFHPPA 182
>UNIPROTKB|F1NBC8 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0007519
"skeletal muscle tissue development" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0008270
GO:GO:0003725 GO:GO:0010494 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00390000001586 OMA:QQQAAFI EMBL:AADN02021113
EMBL:AADN02021114 EMBL:AADN02021115 EMBL:AADN02021116
IPI:IPI00944391 Ensembl:ENSGALT00000016871 ArrayExpress:F1NBC8
Uniprot:F1NBC8
Length = 384
Score = 115 (45.5 bits), Expect = 0.00049, P = 0.00049
Identities = 58/208 (27%), Positives = 89/208 (42%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 69 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 122
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 123 --------VAPSLATNASAAFNPYLGPVSPGLVPAEILPTAPMLVAGNPGVPVPAAA--- 171
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP A SA + +
Sbjct: 172 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHP----ADSAMIDTNDNTV--- 220
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 221 ---TVCMDY-IKGRCS-REKCKYFHPPA 243
>UNIPROTKB|E2QSA8 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 KO:K14943 CTD:4154 RefSeq:XP_866180.2
Ensembl:ENSCAFT00000013668 GeneID:477116 KEGG:cfa:477116
NextBio:20852652 Uniprot:E2QSA8
Length = 341
Score = 114 (45.2 bits), Expect = 0.00052, P = 0.00052
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
>UNIPROTKB|Q9NR56 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0007519 "skeletal muscle tissue
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0001701 "in utero
embryonic development" evidence=ISS] [GO:0030326 "embryonic limb
morphogenesis" evidence=ISS] [GO:0045445 "myoblast differentiation"
evidence=ISS] [GO:0007399 "nervous system development"
evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0007399 GO:GO:0008380 GO:GO:0046872 EMBL:CH471052
GO:GO:0008270 GO:GO:0001701 GO:GO:0003676 GO:GO:0030326
GO:GO:0003725 GO:GO:0043484 GO:GO:0045445 GO:GO:0010494
GO:GO:0007519 GO:GO:0006376 GO:GO:0000381 MIM:160900
eggNOG:NOG241142 KO:K14943 CTD:4154 HOVERGEN:HBG006999
OrthoDB:EOG4BRWN5 EMBL:Y13829 EMBL:AB007888 EMBL:AF255334
EMBL:AF395876 EMBL:AF401998 EMBL:AJ308400 EMBL:AF497718
EMBL:AF497719 EMBL:AC026347 EMBL:AC106722 EMBL:BC043493
IPI:IPI00021692 IPI:IPI00178116 IPI:IPI00218263 IPI:IPI00384261
IPI:IPI00395357 IPI:IPI00410205 IPI:IPI00410279 RefSeq:NP_066368.2
RefSeq:NP_997175.1 RefSeq:NP_997176.1 RefSeq:NP_997177.1
RefSeq:NP_997178.1 RefSeq:NP_997179.1 RefSeq:NP_997180.1
UniGene:Hs.201858 UniGene:Hs.725347 PDB:3D2N PDB:3D2Q PDB:3D2S
PDBsum:3D2N PDBsum:3D2Q PDBsum:3D2S ProteinModelPortal:Q9NR56
SMR:Q9NR56 IntAct:Q9NR56 MINT:MINT-3072751 STRING:Q9NR56
PhosphoSite:Q9NR56 DMDM:17369313 PaxDb:Q9NR56 PeptideAtlas:Q9NR56
PRIDE:Q9NR56 DNASU:4154 Ensembl:ENST00000282486
Ensembl:ENST00000282488 Ensembl:ENST00000324196
Ensembl:ENST00000324210 Ensembl:ENST00000355460
Ensembl:ENST00000357472 Ensembl:ENST00000463374
Ensembl:ENST00000465907 Ensembl:ENST00000485910
Ensembl:ENST00000492948 Ensembl:ENST00000545754 GeneID:4154
KEGG:hsa:4154 UCSC:uc003ezi.3 UCSC:uc003ezm.3 UCSC:uc003ezo.3
GeneCards:GC03P151961 HGNC:HGNC:6923 HPA:CAB016398 MIM:606516
neXtProt:NX_Q9NR56 PharmGKB:PA30666 HOGENOM:HOG000230928
InParanoid:Q9NR56 OMA:QQQAAFI PhylomeDB:Q9NR56 ChEMBL:CHEMBL1293317
ChiTaRS:MBNL1 EvolutionaryTrace:Q9NR56 GenomeRNAi:4154
NextBio:16346 ArrayExpress:Q9NR56 Bgee:Q9NR56 CleanEx:HS_MBNL1
Genevestigator:Q9NR56 GermOnline:ENSG00000152601 Uniprot:Q9NR56
Length = 388
Score = 111 (44.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 57/209 (27%), Positives = 86/209 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGI-VPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQM 138
V+PS A +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA-- 169
Query: 139 HILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPS 196
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 170 ---AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT------- 217
Query: 197 RPGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 218 ---VTVCMDY-IKGRCS-REKCKYFHPPA 241
Score = 43 (20.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 8 CPYYMRTGSC-KFGVACKFHHPQPS 31
C + R G+C + CKF HP S
Sbjct: 19 CREFQR-GTCSRPDTECKFAHPSKS 42
>UNIPROTKB|G3X6F9 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0007519 "skeletal muscle tissue development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0008270 GO:GO:0003725
GO:GO:0010494 GO:GO:0007519 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00390000001586 OMA:QQQAAFI EMBL:DAAA02002626
Ensembl:ENSBTAT00000005998 Uniprot:G3X6F9
Length = 370
Score = 114 (45.2 bits), Expect = 0.00060, P = 0.00060
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
>UNIPROTKB|E2QSC6 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
Ensembl:ENSCAFT00000013656 Uniprot:E2QSC6
Length = 381
Score = 114 (45.2 bits), Expect = 0.00063, P = 0.00063
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
>UNIPROTKB|F6UUJ0 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000001586 Ensembl:ENSCAFT00000013656
EMBL:AAEX03013688 EMBL:AAEX03013689 EMBL:AAEX03013690
Uniprot:F6UUJ0
Length = 387
Score = 114 (45.2 bits), Expect = 0.00064, P = 0.00064
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
>UNIPROTKB|Q66KE3 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG5084 GO:GO:0042462 GO:GO:0005847 HOVERGEN:HBG051108
CTD:10898 KO:K14404 OrthoDB:EOG4KH2VQ EMBL:BC080440
RefSeq:NP_001007933.1 UniGene:Str.3196 ProteinModelPortal:Q66KE3
SMR:Q66KE3 STRING:Q66KE3 GeneID:493312 KEGG:xtr:493312
Xenbase:XB-GENE-948302 InParanoid:Q66KE3 Bgee:Q66KE3 Uniprot:Q66KE3
Length = 269
Score = 101 (40.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 26/82 (31%), Positives = 35/82 (42%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP C+F HP P+
Sbjct: 152 LVGFCIEGPNCKFMHPRFELPM 173
Score = 48 (22.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH 86
>UNIPROTKB|Q6DJP7 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0005847
HOVERGEN:HBG051108 CTD:10898 KO:K14404 EMBL:BC075128
RefSeq:NP_001086337.1 UniGene:Xl.25683 ProteinModelPortal:Q6DJP7
SMR:Q6DJP7 GeneID:444766 KEGG:xla:444766 Xenbase:XB-GENE-948308
Uniprot:Q6DJP7
Length = 269
Score = 101 (40.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 26/82 (31%), Positives = 35/82 (42%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 94 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151
Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
+ G C GP C+F HP P+
Sbjct: 152 LVGFCIEGPNCKFMHPRFELPM 173
Score = 48 (22.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 68 CKHWLR-GLCKKGDQCEFLH 86
>UNIPROTKB|F6UU15 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000001586 OMA:QQQAAFI Ensembl:ENSCAFT00000013668
EMBL:AAEX03013688 EMBL:AAEX03013689 EMBL:AAEX03013690
Uniprot:F6UU15
Length = 399
Score = 114 (45.2 bits), Expect = 0.00068, P = 0.00068
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
>UNIPROTKB|F1SJM7 [details] [associations]
symbol:MBNL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0007519 "skeletal muscle tissue development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0008270 GO:GO:0003725
GO:GO:0010494 GO:GO:0007519 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00390000001586 OMA:QQQAAFI EMBL:CU856483
Ensembl:ENSSSCT00000012830 Uniprot:F1SJM7
Length = 399
Score = 114 (45.2 bits), Expect = 0.00068, P = 0.00068
Identities = 56/208 (26%), Positives = 86/208 (41%)
Query: 23 CKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL-PTWSLQRAPYLSSRLQG 81
CK+ HP P L T L + G +L + + + +Q A ++ P LQ P S
Sbjct: 66 CKYLHPPPH-LKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFS----- 119
Query: 82 TQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSPTSIAGSNLIYSSRNQG-DLGAGAQMH 139
V+PS + +N Y+G + P L P I + + + N G + A A
Sbjct: 120 --------VAPSLATNASAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--- 168
Query: 140 ILSASSQNLPERPDQPD-CRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSR 197
+A++Q L R D+ + CR Y G C G DC+F HP + N
Sbjct: 169 --AAAAQKLM-RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMIDTNDNT-------- 216
Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYA 225
+C +Y + G C C++ HP A
Sbjct: 217 --VTVCMDY-IKGRCS-REKCKYFHPPA 240
>UNIPROTKB|E2RBM0 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:AAEX03004276
Ensembl:ENSCAFT00000023887 NextBio:20862973 Uniprot:E2RBM0
Length = 164
Score = 91 (37.1 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
P+C +Y G C +C F H P+ +I GPL + IC NY
Sbjct: 92 PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 149
Query: 208 MYGICKFGPTCRF 220
+ G C GP+C+F
Sbjct: 150 LVGFCPEGPSCKF 162
Score = 48 (22.0 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 8 CPYYMRTGSCKFGVACKFHH 27
C +++R G CK G C+F H
Sbjct: 66 CKHWLR-GLCKKGDQCEFLH 84
>SGD|S000005975 [details] [associations]
symbol:LEE1 "Zinc-finger protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 SGD:S000005975 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:BK006949 EMBL:U39205 eggNOG:COG5084
InterPro:IPR026290 PANTHER:PTHR11224 OrthoDB:EOG49S9H4 EMBL:X86735
EMBL:AY693073 PIR:S60936 RefSeq:NP_015271.1
ProteinModelPortal:Q02799 SMR:Q02799 STRING:Q02799
EnsemblFungi:YPL054W GeneID:856053 KEGG:sce:YPL054W CYGD:YPL054w
NextBio:981014 Genevestigator:Q02799 GermOnline:YPL054W
Uniprot:Q02799
Length = 301
Score = 111 (44.1 bits), Expect = 0.00089, P = 0.00089
Identities = 58/218 (26%), Positives = 92/218 (42%)
Query: 68 SLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAP-GWNTYMGNIGPLSPTSIAGSNLIYSS 126
S+ P ++R + +QS ++ S Q P +N N+ LS G+ L +SS
Sbjct: 8 SVSNHPGGNAR-RNSQSANEMLASQIQDFQNIPRSFNDSNANVN-LSKNCTVGNQLPFSS 65
Query: 127 RNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA 186
R Q + + I +SQ + P C+++ G C+ G+ C F H + I S+A
Sbjct: 66 RQQKIIME--HLLITKNNSQQQKDYSHVP-CKFF-KMGNCQAGSSCPFSHSPDII--SSA 119
Query: 187 SNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA-GYPINYGXXXXXXXXXXXXX 245
+N LP C Y G CKFG C H G+ +N
Sbjct: 120 NN-----LP-------CK-YFAKGNCKFGNKCVNAHVLPNGFKMNSKEPIDITPPSQNNY 166
Query: 246 MNHQAISATHSIETSP--DASSKIPNWVQNSDAVSVQH 281
++H A SA+ S TSP A ++ + N++ S Q+
Sbjct: 167 LSH-ARSASFSTYTSPPLSAQTEFSHSASNANYFSSQY 203
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 319 306 0.00099 115 3 11 23 0.46 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 48
No. of states in DFA: 606 (64 KB)
Total size of DFA: 237 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.18u 0.10s 28.28t Elapsed: 00:00:01
Total cpu time: 28.19u 0.10s 28.29t Elapsed: 00:00:01
Start: Fri May 10 20:08:30 2013 End: Fri May 10 20:08:31 2013