BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020994
         (319 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis
           thaliana GN=At1g04990 PE=2 SV=1
          Length = 404

 Score =  211 bits (538), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/304 (42%), Positives = 166/304 (54%), Gaps = 48/304 (15%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MR  EK CPYY+RTG+C+FGVACKFHHPQP           N    + G S  P++ L+Y
Sbjct: 134 MRLGEKPCPYYLRTGTCRFGVACKFHHPQPD----------NGHSTAYGMSSFPAADLRY 183

Query: 61  AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGS 120
           A  L   S         R Q  QSY+P++VSPSQG +P  GW  YM           A S
Sbjct: 184 ASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM-----------AAS 229

Query: 121 NLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE 179
           N +Y+ +NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTCKYG DCK+ HP  
Sbjct: 230 NSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSHPGV 289

Query: 180 RIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP-INYGLSLPPL 238
           RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   YP +    SLP  
Sbjct: 290 RISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLPYPGLTMATSLP-- 347

Query: 239 SILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSS 298
           +   S +  HQ IS T             PN    SD+ S+ +  PD+K    K S ++ 
Sbjct: 348 TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPDVK----KESSETE 387

Query: 299 KVDH 302
           K D+
Sbjct: 388 KPDN 391



 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 59/99 (59%), Gaps = 5/99 (5%)

Query: 146 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERI-AQSAASNIGPLGLPSRPGQAICS 204
           + LPER  QPDC Y++ TG CKYG  CK+HHPK+R  AQ    N+  +GLP R G+  C 
Sbjct: 85  EELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPVMFNV--IGLPMRLGEKPCP 142

Query: 205 NYSMYGICKFGPTCRFDHPYA--GYPINYGLSLPPLSIL 241
            Y   G C+FG  C+F HP    G+   YG+S  P + L
Sbjct: 143 YYLRTGTCRFGVACKFHHPQPDNGHSTAYGMSSFPAADL 181



 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 111 PLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL---PERPDQPDCRYYMNTGTCK 167
           P+S T    S+L+    +     A  +M +     + L   P+RP + DC++Y+ TG C 
Sbjct: 4   PMSDTQHVQSSLVSIRSSDKIEDAFRKMKVNETGVEELNPYPDRPGERDCQFYLRTGLCG 63

Query: 168 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
           YG+ C+++HP   + Q  A       LP R GQ  C  +   G CK+GPTC++ HP
Sbjct: 64  YGSSCRYNHPTH-LPQDVAYYKE--ELPERIGQPDCEYFLKTGACKYGPTCKYHHP 116



 Score = 37.4 bits (85), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 20/27 (74%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHP 28
          R  E+ C +Y+RTG C +G +C+++HP
Sbjct: 47 RPGERDCQFYLRTGLCGYGSSCRYNHP 73


>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
           subsp. japonica GN=Os11g0472000 PE=2 SV=2
          Length = 444

 Score =  201 bits (512), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/298 (42%), Positives = 165/298 (55%), Gaps = 30/298 (10%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R +EK C YY+RTG CKFG  CKFHHPQPS+   A+      S+ S G SV   S   Y
Sbjct: 146 LRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAV----RGSVYSPGQSVTSPSQHTY 201

Query: 61  AGSLPTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP---- 114
            G++  W L R A +++S R  G  SY  +IV P  G+V  PGWN Y   IG  S     
Sbjct: 202 PGAVTNWPLSRSASFIASPRWPGHSSYAQVIVPP--GLVQVPGWNPYAAQIGSSSSDDQQ 259

Query: 115 TSIAGSNLIYSSR-----NQGDLG------AGAQ-MHILSASSQNL-PERPDQPDCRYYM 161
            +  G+     SR     N GD G      AG+  + + +   +++ PERPDQP+C++YM
Sbjct: 260 RTAGGAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYM 319

Query: 162 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 221
            TG CK+GA CKFHHPKERI  +    +  LGLP RPG+ IC+ YS YGICKFGP C+FD
Sbjct: 320 KTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFD 379

Query: 222 HPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 279
           HP     + YGL+  P    D S     A    HS E SPD  S     + +SD+  +
Sbjct: 380 HPMGT--VMYGLATSPTG--DVSARRMLAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432



 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 134 AGAQMHILSASSQ-NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPL 192
           A  +M + +A  +   P+R  QP+C+YY+ TGTCK+GA CKFHHP+E+ A +    +  L
Sbjct: 83  ADRKMAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNAL 142

Query: 193 GLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
           G P RP +  C+ Y   G CKFG TC+F HP
Sbjct: 143 GYPLRPNEKECAYYLRTGQCKFGSTCKFHHP 173



 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 131 DLGAGAQMHILSASSQN-LPERPDQPDCRYYMNTGTCKYGADCKFHHPKER-IAQSAASN 188
           D  A  QM++  A      PER  +PDC YYM TG C++G  CKF+HP +R +A +AA  
Sbjct: 35  DEEAMWQMNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARM 94

Query: 189 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
            G    P R GQ  C  Y   G CKFG TC+F HP
Sbjct: 95  KGE--YPQRIGQPECQYYLKTGTCKFGATCKFHHP 127



 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 127 RNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA 186
           R +  +    Q++ L       P RP++ +C YY+ TG CK+G+ CKFHHP     Q + 
Sbjct: 128 REKAAIATRVQLNAL-----GYPLRPNEKECAYYLRTGQCKFGSTCKFHHP-----QPSN 177

Query: 187 SNIGPLGLPSRPGQAICS 204
           + +   G    PGQ++ S
Sbjct: 178 TMVAVRGSVYSPGQSVTS 195



 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTA 36
          R  E  C YYMRTG C+FG+ CKF+HP    +  A
Sbjct: 56 RIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVA 90


>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum
           sativum PE=2 SV=1
          Length = 417

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 143/245 (58%), Gaps = 22/245 (8%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R +E    YY+RTG CKFG  CKFHHPQPS++   L + G+    ++ S   P     Y
Sbjct: 120 LRPNESERAYYLRTGQCKFGNTCKFHHPQPSNM--VLSMRGSTVYPTVQSPTTPGQ-QSY 176

Query: 61  AGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
           A  +  WS   + Y+ S R QG  SY PLI+   QG+V  PGW+TY G +G  SP     
Sbjct: 177 AAGITNWS--SSSYVPSPRWQGPSSYAPLILP--QGVVSVPGWSTYGGQMGSESPQQTMR 232

Query: 120 SNLIYSSRNQGDL-GAGAQ------------MHILSASSQNL-PERPDQPDCRYYMNTGT 165
           ++  Y + +QG+L  AG Q            +   +    N+ PERPDQP+C++YM TG 
Sbjct: 233 NDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGD 292

Query: 166 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 225
           CK+GA C+FHHP+ER   +    + P+GLP RPG+ +C  YS YGICKFGP+C+FDHP  
Sbjct: 293 CKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMG 352

Query: 226 GYPIN 230
            +  N
Sbjct: 353 IFTYN 357



 Score = 88.2 bits (217), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%)

Query: 147 NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNY 206
             PER  QP+C+YY+ TGTCK+GA C+FHHPK++   +    +  LG P RP ++  + Y
Sbjct: 71  EFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESERAYY 130

Query: 207 SMYGICKFGPTCRFDHP 223
              G CKFG TC+F HP
Sbjct: 131 LRTGQCKFGNTCKFHHP 147



 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 137 QMHILSASSQN---LPERPDQPDCRYYMNTGTCKYGADCKFHHPKER-IAQSAASNIGPL 192
           QM++ S+ +      PE P +PDC YY+ TG C++GA C+F+HP  R +A + A   G  
Sbjct: 13  QMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGE- 71

Query: 193 GLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
             P R GQ  C  Y   G CKFG TCRF HP
Sbjct: 72  -FPERLGQPECQYYLKTGTCKFGATCRFHHP 101



 Score = 41.6 bits (96), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 5  EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTA 36
          E  C YY+RTG C+FG  C+F+HP    L  A
Sbjct: 33 EPDCSYYIRTGLCRFGATCRFNHPPNRKLAIA 64


>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
           subsp. japonica GN=Os12g0405100 PE=2 SV=1
          Length = 454

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/271 (41%), Positives = 148/271 (54%), Gaps = 36/271 (13%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MR +EK C YY+RTG CKF   CKFHHPQPS+   A+      S+ S G S        Y
Sbjct: 156 MRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAV----RNSMYSPGQSATSPGQHTY 211

Query: 61  AGSLPTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP---- 114
            G++  W+L R A +++S R  G   Y  +IV   QG+V  PGWN Y   +G  SP    
Sbjct: 212 PGAVTNWTLSRSASFIASPRWPGHSGYAQVIVP--QGLVQVPGWNPYAAQMGSSSPDDQQ 269

Query: 115 ---------------TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCR 158
                          T   G + +Y S   G +  G    + +   +N+ PERPDQP+C+
Sbjct: 270 RTPVTTQYYGSRQSETGGMGDHGMYQSYQGGSVPVG----VYTVQGENIFPERPDQPECQ 325

Query: 159 YYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTC 218
           +YM TG CK+GA CKFHHPKER+  +    +  LGLP RPG+ +C+ YS YGICKFGP C
Sbjct: 326 FYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNC 385

Query: 219 RFDHPYAGYPINYGLSLPPLSILDSSLMNHQ 249
           +FDHP     + YG +  P    D S M++Q
Sbjct: 386 KFDHPMG--TLMYGSATSPRG--DVSSMHYQ 412



 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 49/77 (63%)

Query: 147 NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNY 206
             P R  QP+C+YY+ TGTCK+GA CKFHHP+E+ A +    +  LG P RP +  C+ Y
Sbjct: 107 EYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYY 166

Query: 207 SMYGICKFGPTCRFDHP 223
              G CKF  TC+F HP
Sbjct: 167 LRTGQCKFASTCKFHHP 183



 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 129 QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASN 188
           Q  LG G  M      S   PER  +PDC YYM TG C++G  CKF+HP  R    AA+ 
Sbjct: 49  QMTLGGGESM-----ESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAAR 103

Query: 189 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
           +     P R GQ  C  Y   G CKFG TC+F HP
Sbjct: 104 MNGE-YPYRVGQPECQYYLKTGTCKFGATCKFHHP 137



 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 127 RNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA 186
           R +  L    Q+++L       P RP++ +C YY+ TG CK+ + CKFHHP+      A 
Sbjct: 138 REKAALANRVQLNVL-----GYPMRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAV 192

Query: 187 SN 188
            N
Sbjct: 193 RN 194



 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTA 36
           R  E  C YYMRTG C+FG+ CKF+HP    L  A
Sbjct: 66  RIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVA 100


>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
           thaliana GN=ZFN2 PE=2 SV=1
          Length = 453

 Score =  187 bits (476), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 175/337 (51%), Gaps = 59/337 (17%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MRQ EK CPYYM+TG C+FGVACKFHHP P S     P  G+++      S  PS G  Y
Sbjct: 128 MRQGEKPCPYYMQTGLCRFGVACKFHHPHPHSQ----PSNGHSAYAM---SSFPSVGFPY 180

Query: 61  AGSLPTWSLQRAPYLS---SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSI 117
           A  +   SL  A Y +    ++  +Q+YMP +V+PSQG++P  GW TYM           
Sbjct: 181 ASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYM----------- 229

Query: 118 AGSNLIYSSRNQGDLGAGAQMHILSASSQN-LPERPDQPDCRYYMNTGTCKYGADCKFHH 176
             SN IY+ + Q D  + A + +   S  +   ER +   CR++MNTGTCKYG DCK+ H
Sbjct: 230 TASNPIYNMKTQLDSSSSASVAVTVTSHHHSFSERAE---CRFFMNTGTCKYGDDCKYSH 286

Query: 177 PKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH-------------- 222
           PKER+ QS  + + P+ LP+RPGQ  C N+  YG CKFG  C+FDH              
Sbjct: 287 PKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLNPYNNTGLAM 346

Query: 223 -----PYAGYP---INYGLSLPPLSILDSSLMNHQ-AISATHSIETSP-DASSKIPNWVQ 272
                PY   P    N  +S PP     ++L N + A +   S+ET   D S   P   +
Sbjct: 347 SSLPTPYPYAPPVSTNLRISSPPSPSDMTTLSNGKPAAAEAQSLETEKQDDSPTEPEKSE 406

Query: 273 --------NSDAVSVQHQNPDMKNSTTKNSDDSSKVD 301
                    SD+ S+ +  PD +  T K  DDS+++D
Sbjct: 407 VEDSLPPNGSDSTSLPNDKPDAE--TEKQDDDSAELD 441



 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 47/78 (60%), Gaps = 7/78 (8%)

Query: 148 LPERPDQPDCRYYMNTGTCKYGADCKFHHPKERI-AQSAASNIGPLGLPSRPGQAICSNY 206
           LPER  QPDC     TG CKYG  CK+HHPK+R  A     N+  LGLP R G+  C  Y
Sbjct: 85  LPERVGQPDCE----TGACKYGPTCKYHHPKDRNGAGPVLFNV--LGLPMRQGEKPCPYY 138

Query: 207 SMYGICKFGPTCRFDHPY 224
              G+C+FG  C+F HP+
Sbjct: 139 MQTGLCRFGVACKFHHPH 156



 Score = 36.6 bits (83), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHP 28
          R  E+ C +++RTG C +G +C+++HP
Sbjct: 44 RPGERDCQFFLRTGQCGYGNSCRYNHP 70



 Score = 35.4 bits (80), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 195 PSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP---INYGLSLP 236
           P RPG+  C  +   G C +G +CR++HP    P   I Y   LP
Sbjct: 42  PDRPGERDCQFFLRTGQCGYGNSCRYNHPLTNLPQGIIYYRDQLP 86


>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
           subsp. japonica GN=Os01g0917400 PE=2 SV=2
          Length = 439

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 136/253 (53%), Gaps = 36/253 (14%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPS----- 55
           +R  EK C YY++TG CK+G  CKFHHP+            NA   S GS + PS     
Sbjct: 170 LRPSEKECAYYLKTGQCKYGNTCKFHHPE----------LFNAMASSRGSPIYPSVHSSA 219

Query: 56  -SGLQYAGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLS 113
            +G  Y G++ +W+  R  ++ S R Q   +Y P+IV   QG+V  P WN+Y G + P+S
Sbjct: 220 TAGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVP--QGLVQVPSWNSYTGQMMPVS 277

Query: 114 PTSIA----GSNLIYSSRNQGDLGAGAQMHILSASSQN-------------LPERPDQPD 156
            +       G+   Y +  Q D  AG Q  +    S +              PERPDQP+
Sbjct: 278 SSESRLQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPE 337

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           C+YYM TG CK+GA CKFHHP+ R   +    + P+GLP RPG+ +C  YS YGICKFG 
Sbjct: 338 CQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGA 397

Query: 217 TCRFDHPYAGYPI 229
            C+FDHP    P+
Sbjct: 398 NCKFDHPTMAPPM 410



 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 49/77 (63%)

Query: 147 NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNY 206
             PER  QP+C+YY+ TGTCK+G  CKFHHP+E+   +    +  LG P RP +  C+ Y
Sbjct: 121 EYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYY 180

Query: 207 SMYGICKFGPTCRFDHP 223
              G CK+G TC+F HP
Sbjct: 181 LKTGQCKYGNTCKFHHP 197



 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 3/76 (3%)

Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKER-IAQSAASNIGPLGLPSRPGQAICSNYS 207
           PER  +PDC YY+ TG C++G  C+F+HP++R +A ++A   G    P R GQ  C  Y 
Sbjct: 78  PERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGE--YPERMGQPECQYYL 135

Query: 208 MYGICKFGPTCRFDHP 223
             G CKFGPTC+F HP
Sbjct: 136 KTGTCKFGPTCKFHHP 151



 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 127 RNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK--ERIAQS 184
           R +  +    Q++ L       P RP + +C YY+ TG CKYG  CKFHHP+    +A S
Sbjct: 152 REKAGIAGRVQLNTL-----GYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASS 206

Query: 185 AASNIGP 191
             S I P
Sbjct: 207 RGSPIYP 213



 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTA 36
           R  E  C YY+RTG C+FG++C+F+HPQ  +L  A
Sbjct: 80  RSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIA 114



 Score = 40.0 bits (92), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 179 ERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
           +++  S +  + P   P R G+  C+ Y   G+C+FG +CRF+HP
Sbjct: 62  QQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHP 106


>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
           thaliana GN=At3g48440 PE=1 SV=1
          Length = 448

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 126/228 (55%), Gaps = 19/228 (8%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R  E  CPYYMR GSCK+G  CKF+HP P+++G     +   + G    +  P +  Q 
Sbjct: 203 LRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRGNNGVSIGTFSPKATFQ- 261

Query: 61  AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPA-PGWNTYMGNI-----GPLSP 114
             S  +WS  R       + GT  ++P+++S + G+    P WN Y  ++     G  SP
Sbjct: 262 -ASSTSWSSPR------HVNGTSPFIPVMLSQTHGVTSQNPEWNGYQASVYSSERGVFSP 314

Query: 115 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 174
           ++   + L+ +S  +  +      H + A  +  PERPDQP+C YYM TG CK+  +CK+
Sbjct: 315 ST---TYLMNNSSAETSMLLSQYRHQMPA--EEFPERPDQPECSYYMKTGDCKFKFNCKY 369

Query: 175 HHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
           HHPK R+ +     +   GLP RP Q IC+ YS YGICKFGP CRFDH
Sbjct: 370 HHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417



 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 42/68 (61%)

Query: 156 DCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFG 215
           DC+YY  TG CKYG  C+F+H   +   ++A  +  LGLP RPG+  C  Y   G CK+G
Sbjct: 163 DCKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYG 222

Query: 216 PTCRFDHP 223
             C+F+HP
Sbjct: 223 AECKFNHP 230



 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 47/88 (53%), Gaps = 15/88 (17%)

Query: 144 SSQNL-PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI--------GPLGL 194
            S+N+ P RP   DC +YM TG+CK+G+ CKF+HP  R  Q A  N         G LGL
Sbjct: 102 ESENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGL 161

Query: 195 PSRPGQAICSNYSMYGICKFGPTCRFDH 222
                   C  Y   G CK+G TCRF+H
Sbjct: 162 ------IDCKYYFRTGGCKYGETCRFNH 183



 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query: 148 LPERPDQPDCRYYMNTGTCKYGADCKFHHP 177
           LP RP + +C YYM  G+CKYGA+CKF+HP
Sbjct: 201 LPLRPGEVECPYYMRNGSCKYGAECKFNHP 230



 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHP 28
           +R   + C +YMRTGSCKFG +CKF+HP
Sbjct: 109 VRPGAEDCSFYMRTGSCKFGSSCKFNHP 136



 Score = 40.8 bits (94), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 195 PSRPGQAICSNYSMYGICKFGPTCRFDHPYA 225
           P RPG   CS Y   G CKFG +C+F+HP A
Sbjct: 108 PVRPGAEDCSFYMRTGSCKFGSSCKFNHPLA 138


>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis
           thaliana GN=ZFN1 PE=1 SV=1
          Length = 397

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 143/285 (50%), Gaps = 45/285 (15%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R +E  C Y++RTG CKFG  CKF+HPQP      +P +G  S                
Sbjct: 130 LRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSY--------------- 174

Query: 61  AGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
                 WS  RA +++S R Q   SY  LI+   QG+VP  GWN Y G +G +SP+   G
Sbjct: 175 -----PWS--RASFIASPRWQDPSSYASLIMP--QGVVPVQGWNPYSGQLGSVSPSG-TG 224

Query: 120 SNLIYSSRNQGDLGAGAQMHILSASSQN------------------LPERPDQPDCRYYM 161
           ++  Y +  Q +          S S  N                   PERP QP+C++YM
Sbjct: 225 NDQNYRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYM 284

Query: 162 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 221
            TG CK+G  CKFHHP++R A      +  +GLP RPG+ +C  Y+ YGICKFGP+C+FD
Sbjct: 285 KTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFD 344

Query: 222 HPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSK 266
           HP   +  +   S     ++++S    + +S + + + +  +S K
Sbjct: 345 HPMRVFTYDNTASETD-EVVETSTGKSRRLSVSETRQAATTSSGK 388



 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 48/75 (64%)

Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 208
           PER  QP+C YY+ TGTCK+G  CKFHHP+ +   +   ++  LG P R  +  C+ +  
Sbjct: 83  PERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLR 142

Query: 209 YGICKFGPTCRFDHP 223
            G CKFG TC+F+HP
Sbjct: 143 TGHCKFGGTCKFNHP 157



 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 208
           PERP +PDC YY+ TG C++G+ C+F+HP++R    A + +     P R GQ  C  Y  
Sbjct: 38  PERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-EYPERIGQPECEYYLK 96

Query: 209 YGICKFGPTCRFDHP 223
            G CKFG TC+F HP
Sbjct: 97  TGTCKFGVTCKFHHP 111



 Score = 42.7 bits (99), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTA 36
          R  E  C YY+RTG C+FG  C+F+HP+   L  A
Sbjct: 40 RPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIA 74


>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
           thaliana GN=At2g47850 PE=2 SV=2
          Length = 468

 Score =  160 bits (406), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/234 (38%), Positives = 127/234 (54%), Gaps = 18/234 (7%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R+ +  C YY++TG CKFG+ CKFHHPQP+      P            S++P    QY
Sbjct: 135 VREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQSLMPD---QY 191

Query: 61  AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP----- 114
            G   +  + R     S +QG  +Y P++++P  G+VP PGW+ Y   + P LSP     
Sbjct: 192 GGPSSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGAQHA 247

Query: 115 ---TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYG 169
              TS+ G   + S+     G   + +    +    Q  PERP +P+C+YY+ TG CK+G
Sbjct: 248 VGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFG 307

Query: 170 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
             CKFHHP++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FDHP
Sbjct: 308 TSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361



 Score = 81.3 bits (199), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 49/88 (55%)

Query: 136 AQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLP 195
           A +     ++   PER  +P C++Y+ TGTCK+GA CKFHHPK      +   +   G P
Sbjct: 75  ASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYP 134

Query: 196 SRPGQAICSNYSMYGICKFGPTCRFDHP 223
            R G   CS Y   G CKFG TC+F HP
Sbjct: 135 VREGDNECSYYLKTGQCKFGITCKFHHP 162



 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 131 DLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIG 190
           D G    M  L   S + PERP  PDC YYM TG C YG  C+++HP++R   S  + + 
Sbjct: 25  DTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRA--SVEATVR 82

Query: 191 PLG-LPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
             G  P R G+  C  Y   G CKFG +C+F HP
Sbjct: 83  ATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHP 116



 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 134 AGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
           AG  M  +  +    P R    +C YY+ TG CK+G  CKFHHP+
Sbjct: 119 AGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHPQ 163



 Score = 36.2 bits (82), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
          R     C YYMRTG C +G  C+++HP+
Sbjct: 45 RPGAPDCAYYMRTGVCGYGNRCRYNHPR 72


>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
           thaliana GN=At5g63260 PE=2 SV=2
          Length = 435

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 29/232 (12%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALPLTGNASLGSMGSSVLPSSGLQ 59
           +R  EK CP+YMR GSCKFG  CKF+HP P+++G    PL      G+ G S  P +   
Sbjct: 193 IRPGEKECPFYMRNGSCKFGSDCKFNHPDPTAIGGVDSPLY----RGNNGGSFSPKA--- 245

Query: 60  YAGSLPTWSLQRAPYLSSRLQGTQS--YMPLIVSPSQGIVP-APGWNTYMGNIG------ 110
                P+ +   +   +  + GT +  ++P +   S+G+ P A  WN Y  +        
Sbjct: 246 -----PSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTPQASDWNGYQASSAYPPERS 300

Query: 111 PLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA 170
           PL+P+S   +N +  +       +    +    S +  PERPDQP+C YY+ TG CK+  
Sbjct: 301 PLAPSSYQVNNSLAET-------SSFSQYQHQMSVEEFPERPDQPECTYYLKTGDCKFKY 353

Query: 171 DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
            CK+HHPK R+ + AA +    GLP RP Q++C++YS YGICKFGP CRFDH
Sbjct: 354 KCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405



 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 44/74 (59%)

Query: 150 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMY 209
           E P   +C+YY  TG CKYG  C+F H KE  + ++   +  LGLP RPG+  C  Y   
Sbjct: 147 ENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRN 206

Query: 210 GICKFGPTCRFDHP 223
           G CKFG  C+F+HP
Sbjct: 207 GSCKFGSDCKFNHP 220



 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query: 148 LPERPDQPDCRYYMNTGTCKYGADCKFHHP 177
           LP RP + +C +YM  G+CK+G+DCKF+HP
Sbjct: 191 LPIRPGEKECPFYMRNGSCKFGSDCKFNHP 220



 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHP 28
           +R D + C +YMRTGSCK+G +CKF+HP
Sbjct: 100 VRPDSEDCSFYMRTGSCKYGSSCKFNHP 127



 Score = 37.4 bits (85), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL 33
           +R D+  C +Y R G CKFG AC+F H  P + 
Sbjct: 379 LRPDQSMCTHYSRYGICKFGPACRFDHSIPPTF 411



 Score = 35.4 bits (80), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 195 PSRPGQAICSNYSMYGICKFGPTCRFDHP 223
           P RP    CS Y   G CK+G +C+F+HP
Sbjct: 99  PVRPDSEDCSFYMRTGSCKYGSSCKFNHP 127


>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis
           thaliana GN=At5g18550 PE=2 SV=1
          Length = 465

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 126/232 (54%), Gaps = 15/232 (6%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R  EK C Y+MRTG CKFG  C++HHP P   G   P        S G ++ PS   Q 
Sbjct: 144 LRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQQQQLSAGPTMYPSLQSQT 201

Query: 61  AGSLPTWSLQRA-PYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SPTS 116
             S   + +  A P L   S +Q    Y  +++ P  G+VP  GWN Y  ++  + SP +
Sbjct: 202 VPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPP--GMVPYSGWNPYQASVSAMPSPGT 259

Query: 117 --IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGA 170
               G++ +Y     S +     +G     +S   Q  P+RP+QP+C+Y+M TG CK+G 
Sbjct: 260 QPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGT 319

Query: 171 DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
            C+FHHP E  A   AS +  +GLP RPG   C++++ +GICKFGP C+FDH
Sbjct: 320 SCRFHHPME-AASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370



 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 146 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 205
           +  PERPD+PDC YY+ TG C YG+ C+F+HP+ R              P R GQ +C +
Sbjct: 46  ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQH 105

Query: 206 YSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSI 240
           +   G CKFG +C++ HP  G     G S+ P+S+
Sbjct: 106 FMRTGTCKFGASCKYHHPRQG---GGGDSVTPVSL 137



 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 141 LSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAAS--NIGPLGLPSRP 198
           L   +   PER  QP C+++M TGTCK+GA CK+HHP++     + +  ++  +G P RP
Sbjct: 87  LRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRP 146

Query: 199 GQAICSNYSMYGICKFGPTCRFDHP 223
           G+  CS +   G CKFG TCR+ HP
Sbjct: 147 GEKECSYFMRTGQCKFGSTCRYHHP 171



 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 119 GSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
           G++  Y    QG  G G  +  +S +    P RP + +C Y+M TG CK+G+ C++HHP 
Sbjct: 115 GASCKYHHPRQG--GGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPV 172

Query: 179 ERIAQSAAS------NIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYG 232
               Q+ +       + GP   PS   Q + S+   YG+    P       Y   P  YG
Sbjct: 173 PPGVQAPSQQQQQQLSAGPTMYPSLQSQTVPSS-QQYGVVLARPQL-LPGSYVQSPYGYG 230

Query: 233 -LSLPPLSILDSSLMNHQA-ISATHSIETSP 261
            + LPP  +  S    +QA +SA  S  T P
Sbjct: 231 QMVLPPGMVPYSGWNPYQASVSAMPSPGTQP 261



 Score = 41.2 bits (95), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
          R DE  C YY+RTG C +G  C+F+HP+
Sbjct: 51 RPDEPDCIYYLRTGVCGYGSRCRFNHPR 78


>sp|Q2QTY2|C3H65_ORYSJ Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa
           subsp. japonica GN=Os12g0278800 PE=2 SV=1
          Length = 529

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 122/244 (50%), Gaps = 33/244 (13%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPL----TGNASLGSM-GSSVLPS 55
           +R  EK CPYYMRTGSCK+   CKFHHP PS++ +  P      G+A    + GSS  P+
Sbjct: 284 LRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQDVQGSSSQPN 343

Query: 56  SGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVS---------PSQGIVPAPGWNTY- 105
           + +        W  QR           + ++P I           P QG+ P P WN Y 
Sbjct: 344 ASI--------WPDQRT--------VNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYH 387

Query: 106 MGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGT 165
              + P  P  +   +   +  N     A          S+  PERP QP+C++++ +G 
Sbjct: 388 QVPLNPYYPPGVPFQHFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGF 447

Query: 166 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 225
           CK+   CK+HHP+  +  + A  + PLGLP +P Q +C+ Y  YG+CKFGP C ++HP+ 
Sbjct: 448 CKFRMKCKYHHPRSPVPPAGA--LSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFN 505

Query: 226 GYPI 229
             P+
Sbjct: 506 FSPV 509



 Score = 61.2 bits (147), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 154 QPDCRYYMNTGTCKYGADCKFHHP--KERIAQSAASNIGPLGLPSRPGQAICSNYSMYGI 211
           Q +C+YY   G CK+G  CK+ H   KE    +   ++  LGLP RPG+  C  Y   G 
Sbjct: 240 QEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGS 299

Query: 212 CKFGPTCRFDHP 223
           CK+   C+F HP
Sbjct: 300 CKYATNCKFHHP 311



 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 23/30 (76%)

Query: 148 LPERPDQPDCRYYMNTGTCKYGADCKFHHP 177
           LP RP + +C YYM TG+CKY  +CKFHHP
Sbjct: 282 LPLRPGEKECPYYMRTGSCKYATNCKFHHP 311



 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 144 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKER 180
           S    P RP +PDC YY+  G+C++G  CKF+HP  +
Sbjct: 101 SRPRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARK 137



 Score = 40.8 bits (94), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHP 28
           R  E  C YY++ GSC+FG+ CKF+HP
Sbjct: 108 RPGEPDCTYYVKFGSCRFGMKCKFNHP 134



 Score = 40.8 bits (94), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 194 LPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
            P RPG+  C+ Y  +G C+FG  C+F+HP
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHP 134


>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis
           thaliana GN=ZFN3 PE=2 SV=2
          Length = 375

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 139/291 (47%), Gaps = 57/291 (19%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R +E  C Y++R G CKFG  CKF+HPQ  S         N  +   GS V   S LQ 
Sbjct: 132 LRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQS 181

Query: 61  AGSLPTWSLQRAPYLSS--RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA 118
               P++S  R  ++++  RLQ    +     S SQG + + G+++  GN  PL   ++ 
Sbjct: 182 LTGQPSYSWSRTSFVANPPRLQDPSGF----ASGSQGGLFSSGFHS--GNSVPLGFYALP 235

Query: 119 GSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
             N+                          PERP QP+C++YM TG CK+G  CKFHHP+
Sbjct: 236 RENV-------------------------FPERPGQPECQFYMKTGDCKFGTVCKFHHPR 270

Query: 179 ERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPL 238
           +R        +  +GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  N   + P  
Sbjct: 271 DRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSP 330

Query: 239 SILDSSLMNHQAIS-------ATHSIETSPDASSKIPNWVQNSDA-VSVQH 281
           S   SSL    AI+        + S+E  P   + +P      D  V  QH
Sbjct: 331 S---SSLHQETAITTELRNLLVSSSVEAKP---TSLPETTSAKDTIVDAQH 375



 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 48/75 (64%)

Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 208
           PER  QP+C +Y+ TGTCK+G  CKFHHP+ +     + ++  L  P RP +  CS +  
Sbjct: 85  PERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLR 144

Query: 209 YGICKFGPTCRFDHP 223
            G CKFG TC+F+HP
Sbjct: 145 IGQCKFGGTCKFNHP 159



 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 129 QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASN 188
           Q +LG+   M +      + PER  +PDC YY+ TG C++G+ C+F+HP +R    A + 
Sbjct: 24  QMNLGSDDTMGV----DGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATAR 79

Query: 189 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLS 239
           I     P R GQ  C  Y   G CKFG TC+F HP     I+  +S+  LS
Sbjct: 80  IKG-EYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLS 129



 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)

Query: 127 RNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
           RN+  +     +++LS      P RP++ DC Y++  G CK+G  CKF+HP+
Sbjct: 114 RNKAGIDGSVSVNVLS-----YPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQ 160



 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTA 36
          R  E  C YY+RTG C+FG  C+F+HP    L  A
Sbjct: 42 RHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIA 76


>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
           japonica GN=Os01g0257400 PE=2 SV=1
          Length = 466

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/273 (37%), Positives = 139/273 (50%), Gaps = 56/273 (20%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLP---SSG 57
           +R  EK C YY++TG CKFG  CKFHHP+         + G +   +M   V P   SS 
Sbjct: 144 LRSGEKDCTYYVKTGHCKFGSTCKFHHPE---------IGGVSETPNMYPPVQPQPISSS 194

Query: 58  LQYAGSLPTWSLQRAPYL-SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTS 116
             Y   L  W + R P L  S L G  SY P+++ PS  +VP  GWN Y   I P++  +
Sbjct: 195 HPYQ-HLAGWQMGRPPVLPGSFLSG--SYPPMML-PST-VVPMQGWNPY---ISPVNQVA 246

Query: 117 IAGSNL------IYSSRNQGDLGA---GAQMHILSASSQN---------LPERPDQPDCR 158
            AG +        Y   +QG   A   G+Q   LS+S+            P RP QP+C+
Sbjct: 247 SAGGHQTVQAGPFYGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPECQ 306

Query: 159 YYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTC 218
           YY+ TG+CK+G+ CK+HHP+      +   + PLGLP RPG   C+ Y+ +G CKFGPTC
Sbjct: 307 YYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTC 366

Query: 219 RFDHPY-----------------AGYPINYGLS 234
           +FDHP                  A YP+NY ++
Sbjct: 367 KFDHPMGTLSYSPSASSITDLPIAPYPLNYAVA 399



 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 142 SASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLG----LPSR 197
           + ++  LPERP + DC YY+ TG C YG +C+++HP++R A +  +  G        P R
Sbjct: 42  AVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVLNGGGKTTHSAEYPER 101

Query: 198 PGQAICSNYSMYGICKFGPTCRFDHPYAG 226
           PGQ +C  Y   G CKFG  C++DHP  G
Sbjct: 102 PGQPVCEYYMKNGTCKFGSNCKYDHPREG 130



 Score = 85.1 bits (209), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 145 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICS 204
           S   PERP QP C YYM  GTCK+G++CK+ HP+E   Q+   N    G P R G+  C+
Sbjct: 95  SAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQAVMLNSS--GYPLRSGEKDCT 152

Query: 205 NYSMYGICKFGPTCRFDHPYAG 226
            Y   G CKFG TC+F HP  G
Sbjct: 153 YYVKTGHCKFGSTCKFHHPEIG 174



 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 67/177 (37%), Gaps = 55/177 (31%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYA 61
           R  E  C YY+RTG+C +G  C+++HP+  +    L    N    +  S+  P       
Sbjct: 51  RPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAVL----NGGGKTTHSAEYPE------ 100

Query: 62  GSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSN 121
                                         P Q     P    YM N      T   GSN
Sbjct: 101 -----------------------------RPGQ-----PVCEYYMKNG-----TCKFGSN 121

Query: 122 LIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPK 178
             Y    +G + A      +  +S   P R  + DC YY+ TG CK+G+ CKFHHP+
Sbjct: 122 CKYDHPREGSVQA------VMLNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPE 172


>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
           thaliana GN=At3g06410 PE=2 SV=2
          Length = 462

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 125/234 (53%), Gaps = 14/234 (5%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGS--SVLPSSGL 58
           +R  EK C YY+RTG CKFG+ C+F+HP P ++                   ++ P+   
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQS 206

Query: 59  QYAGSLPTWSL--QRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SPT 115
           Q   S   + L   R  +L+     +    P+++ P  G+VP  GWN Y  ++  + SP 
Sbjct: 207 QSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPP--GMVPYSGWNPYQASLSAMPSPG 264

Query: 116 S--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY 168
           +    GS+ IY     S       G    +   +++S+  P+RPDQP+C+Y+M TG CK+
Sbjct: 265 TQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKF 324

Query: 169 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
           G+ C++HHP + +       +  +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct: 325 GSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378



 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 3/95 (3%)

Query: 146 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 205
           ++ PERPD+PDC YY+ TG C YG+ C+F+HP++R A           LP R G  +C +
Sbjct: 49  ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQH 108

Query: 206 YSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSI 240
           +   G CKFG +C++ HP  G     G S+ P+S+
Sbjct: 109 FMRTGTCKFGASCKYHHPRQG---GGGGSVAPVSL 140



 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 115 TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKF 174
           T   G++  Y    QG  G G  +  +S S    P RP + +C YY+ TG CK+G  C+F
Sbjct: 114 TCKFGASCKYHHPRQG--GGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRF 171

Query: 175 HHP 177
           +HP
Sbjct: 172 NHP 174



 Score = 43.5 bits (101), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
           R     C ++MRTG+CKFG +CK+HHP+
Sbjct: 100 RMGHPVCQHFMRTGTCKFGASCKYHHPR 127



 Score = 41.2 bits (95), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
          R DE  C YY+RTG C +G  C+F+HP+
Sbjct: 54 RPDEPDCIYYLRTGVCGYGSRCRFNHPR 81


>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
           japonica GN=Os01g0258700 PE=2 SV=2
          Length = 476

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 135/258 (52%), Gaps = 31/258 (12%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           +R  EK C YYM+TG CKFG  CKFHHP+    G  +P+T          S+  +S   Y
Sbjct: 152 IRLGEKECSYYMKTGQCKFGTTCKFHHPE---FG-GVPMTPGIYPPLQSPSI--ASPHPY 205

Query: 61  AGSLPTWSLQRAPYL-SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAG 119
           A SL  W + R P +  S + G  SY P+++S   G++P  GW+ Y  ++ P+  +  A 
Sbjct: 206 A-SLANWQMGRPPVVPGSYIPG--SYTPMMLS--SGMIPLQGWSPYPASVNPVV-SGGAQ 259

Query: 120 SNL----IYSSRNQGDLG----AGAQMHILSASSQN--------LPERPDQPDCRYYMNT 163
            N+    +Y   + G        G  +   S++ Q+         PERP QPDC+YYM T
Sbjct: 260 QNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRT 319

Query: 164 GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
           G CK+GA CK+HHP+E  A  +   +  L LP RPG   C+ Y+  G C++G  C++DHP
Sbjct: 320 GDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379

Query: 224 YAGYPINYGLSLPPLSIL 241
                + Y  S  PLS +
Sbjct: 380 MGT--LGYSPSALPLSDM 395



 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 127 RNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA 186
           R   + G GA+    +A++ + PER  QP C YYM TGTCK+G +CK+HHPK+  A    
Sbjct: 88  RGGTEFGGGAR----NAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPV 143

Query: 187 SNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP-YAGYPINYGLSLPPL 238
             +   G P R G+  CS Y   G CKFG TC+F HP + G P+  G+  PPL
Sbjct: 144 M-LNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPEFGGVPMTPGI-YPPL 194



 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 147 NLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQS---AASNIGPLGLPSRPGQAIC 203
            LPERP + DC YY+ TG C +G  C+++HP++R        A N   L  P R GQ IC
Sbjct: 55  RLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPIC 114

Query: 204 SNYSMYGICKFGPTCRFDHP 223
             Y   G CKFG  C++ HP
Sbjct: 115 EYYMKTGTCKFGTNCKYHHP 134



 Score = 40.4 bits (93), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
          R  E+ C YY+RTG+C FG  C+++HP+
Sbjct: 59 RPGEEDCVYYLRTGACGFGDRCRYNHPR 86


>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
           thaliana GN=HUA1 PE=1 SV=1
          Length = 524

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 117/249 (46%), Gaps = 44/249 (17%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHPQ----PSS---LGTALPLTGNASLGSMGSSVLP 54
           R  E  C +YM+TG CKFG++CKFHHP+    PSS   +G+++ LT      +       
Sbjct: 268 RPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFT 327

Query: 55  SSGLQYAGSLPTWSLQ-RAPYL----SSRLQGT--------QSYMPLIVSPSQGIVPAPG 101
            +    +  LP  S +   P+     S +   T         +++P     +  +V +  
Sbjct: 328 PALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSS-- 385

Query: 102 WNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYM 161
            NT   N+G ++P     +   Y +  Q  LG      ++SA+    P+RP Q +C YYM
Sbjct: 386 -NTANLNLGLVTP-----ATSFYQTLTQPTLG------VISAT---YPQRPGQSECDYYM 430

Query: 162 NTGTCKYGADCKFHHPKERIA-------QSAASNIGPLGLPSRPGQAICSNYSMYGICKF 214
            TG CK+G  CKFHHP +R++       Q     +   G P R G   C  Y   G CK+
Sbjct: 431 KTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKY 490

Query: 215 GPTCRFDHP 223
           G TC+FDHP
Sbjct: 491 GATCKFDHP 499



 Score = 92.8 bits (229), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 99/249 (39%), Gaps = 83/249 (33%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYA 61
           R  EK C +YM+T +CKFG +C+F HP        +P                       
Sbjct: 174 RAGEKDCTHYMQTRTCKFGESCRFDHP------IWVP----------------------E 205

Query: 62  GSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSN 121
           G +P W  + AP                V P++     PG         P  P  I    
Sbjct: 206 GGIPDW--KEAP----------------VVPNEEYPERPG--------EPDCPYYIKTQR 239

Query: 122 LIYSSRNQGDLGAGAQMHILSASSQN-LPERPDQPDCRYYMNTGTCKYGADCKFHHPKER 180
             Y S+ +       +   +S  +Q+ LPERP +P C +YM TG CK+G  CKFHHPK+ 
Sbjct: 240 CKYGSKCK--FNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDI 297

Query: 181 IAQSAASNIG--------------------------PLGLPSRPGQAICSNYSMYGICKF 214
              S++ +IG                            GLP R G+  C  Y   G CK+
Sbjct: 298 QLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGLPVRSGEVDCPFYLKTGSCKY 357

Query: 215 GPTCRFDHP 223
           G TCR++HP
Sbjct: 358 GATCRYNHP 366



 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 54/196 (27%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTG--NASLGSMGSSVLPSSGL 58
           +R  E  CP+Y++TGSCK+G  C+++HP+ ++    +P     N SL S  ++ L + GL
Sbjct: 339 VRSGEVDCPFYLKTGSCKYGATCRYNHPERTAF---IPQAAGVNYSLVSSNTANL-NLGL 394

Query: 59  QYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA 118
                               +    S+   +  P+ G++ A    TY    G        
Sbjct: 395 --------------------VTPATSFYQTLTQPTLGVISA----TYPQRPG-------Q 423

Query: 119 GSNLIYSSRNQGDLGAGAQMH----ILSASSQNLPERPDQP-------------DCRYYM 161
                Y    +   G   + H     LSA ++  P++P+               +C YYM
Sbjct: 424 SECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYM 483

Query: 162 NTGTCKYGADCKFHHP 177
            TGTCKYGA CKF HP
Sbjct: 484 KTGTCKYGATCKFDHP 499



 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHH----PKERIAQSAASNIGP-LGLPSRPGQAIC 203
           P+R  + DC +YM T TCK+G  C+F H    P+  I     + + P    P RPG+  C
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPDC 231

Query: 204 SNYSMYGICKFGPTCRFDHP 223
             Y     CK+G  C+F+HP
Sbjct: 232 PYYIKTQRCKYGSKCKFNHP 251



 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL 33
           R+   +CPYYM+TG+CK+G  CKF HP P  +
Sbjct: 473 REGALNCPYYMKTGTCKYGATCKFDHPPPGEV 504


>sp|Q3ECU8|C3H13_ARATH Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis
           thaliana GN=At1g48195 PE=4 SV=1
          Length = 82

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 51/79 (64%)

Query: 144 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 203
           S +  PERP +P+C YY+ TG C    +CK+HHPK          +   GLP RPGQAIC
Sbjct: 2   SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61

Query: 204 SNYSMYGICKFGPTCRFDH 222
            +YS +GIC+ GPTC+FDH
Sbjct: 62  PHYSRFGICRSGPTCKFDH 80



 Score = 35.4 bits (80), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
          R  E  C YY+RTG+C     CK+HHP+
Sbjct: 9  RPGEPECSYYLRTGNCYLKQNCKYHHPK 36


>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
           japonica GN=Os01g0616400 PE=2 SV=2
          Length = 462

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 110/262 (41%), Gaps = 60/262 (22%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQ----PSSLG---TALPLTGNASLGSMGSSV- 52
           +R  E  C +Y +TG CKF   CKF+HP+    PSS     +A+ + G   +GS   SV 
Sbjct: 208 VRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVS 267

Query: 53  ----LPSSGLQYAGS--LPTWSLQ-RAPYL----SSRLQGTQSY---------MPLIVSP 92
                P +  Q   S  LP    +   P+     S +   T  +          PL +  
Sbjct: 268 AKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLG- 326

Query: 93  SQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRN--QGDLGAGAQMHILSASSQNLPE 150
            Q I+P P                   S L+ SS N  QG     A M +        P+
Sbjct: 327 -QTILPTPE------------------SMLLNSSANFMQGFDFHAAHMPV-GPGPVTYPQ 366

Query: 151 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGP---------LGLPSRPGQA 201
           RP    C +YM TG CK+   CKFHHP +R A   ++N  P          GLP R    
Sbjct: 367 RPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAV 426

Query: 202 ICSNYSMYGICKFGPTCRFDHP 223
           +C+ Y   G+CKFG  C+FDHP
Sbjct: 427 VCAFYMKTGVCKFGMQCKFDHP 448



 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 106/285 (37%), Gaps = 83/285 (29%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYA 61
           R  EK C +YM T +CKFG +CKF HPQ                       +P  G+   
Sbjct: 105 RPGEKDCAFYMMTRTCKFGGSCKFDHPQ----------------------WVPEGGI--- 139

Query: 62  GSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSN 121
              P W  Q A          +SY      P Q   P      +    G     S    N
Sbjct: 140 ---PNWKEQAA-------NVEESY------PEQEGEPD---CPFFMKTGKCKFGSKCKFN 180

Query: 122 LIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKE-- 179
                 N    G     H++ A S  LP RP +P C +Y  TG CK+ A CKF+HPK+  
Sbjct: 181 HPKEKVNALASGNTNDKHLI-ADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIE 239

Query: 180 -------------------------------RIAQSAASNIGPLGLPSRPGQAICSNYSM 208
                                          +   +AA      GLP RPG+  C  Y  
Sbjct: 240 IPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMK 299

Query: 209 YGICKFGPTCRFDHP---YAGYPINYGLSLPPLSILDSSLMNHQA 250
            G CKFG TCRF+HP      +P+  G ++ P    +S L+N  A
Sbjct: 300 MGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTP--ESMLLNSSA 342



 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 74/194 (38%), Gaps = 23/194 (11%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQY 60
           MR  E  CP+YM+ GSCKFG  C+F+HP    L   LPL         G ++LP+     
Sbjct: 287 MRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPL---------GQTILPTPE--- 334

Query: 61  AGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGS 120
                +  L  +           ++MP  V P     P     T             A  
Sbjct: 335 -----SMLLNSSANFMQGFDFHAAHMP--VGPGPVTYPQRPGATVCDFYMKTGFCKFADR 387

Query: 121 NLIYSSRNQGDLGAGAQMHILSASSQ----NLPERPDQPDCRYYMNTGTCKYGADCKFHH 176
              +   ++      A       S Q     LP R D   C +YM TG CK+G  CKF H
Sbjct: 388 CKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDH 447

Query: 177 PKERIAQSAASNIG 190
           P  + A +  SN G
Sbjct: 448 PPPQEAIAKVSNSG 461



 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 17/94 (18%)

Query: 141 LSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP-----------KERIAQSAASNI 189
           L +S    P+RP + DC +YM T TCK+G  CKF HP           KE+ A    S  
Sbjct: 95  LESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANVEES-- 152

Query: 190 GPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
                P + G+  C  +   G CKFG  C+F+HP
Sbjct: 153 ----YPEQEGEPDCPFFMKTGKCKFGSKCKFNHP 182


>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
           subsp. japonica GN=Os06g0520600 PE=2 SV=1
          Length = 711

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 21/103 (20%)

Query: 145 SQNLPERPDQPDCRYYMNTGTCKYGADCKFHHP---------------------KERIAQ 183
           ++  P RP +PDC YY+  G+CK+G +C+F+HP                      E  ++
Sbjct: 84  AEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSK 143

Query: 184 SAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226
                +  LGLP RPG  +CS Y   GICKFG  C+FDHP  G
Sbjct: 144 VEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHPDPG 186



 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 43/75 (57%)

Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSM 208
           P RP +PDC YY+  G+CK+G  C ++HP  R    A         P RPG+  CS Y  
Sbjct: 42  PRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVK 101

Query: 209 YGICKFGPTCRFDHP 223
           +G CKFG  CRF+HP
Sbjct: 102 FGSCKFGMNCRFNHP 116



 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 21/37 (56%)

Query: 8   CPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNAS 44
           C YYM  G CKFG  CKF HP P S      ++ NA+
Sbjct: 163 CSYYMNRGICKFGTNCKFDHPDPGSDHEKWVVSSNAN 199



 Score = 40.8 bits (94), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 2  RQDEKSCPYYMRTGSCKFGVACKFHHPQP 30
          R  E  C YY++ GSCKFG++C ++HP P
Sbjct: 44 RPGEPDCSYYVKFGSCKFGISCVYNHPDP 72



 Score = 40.4 bits (93), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHP 28
           R  E  C YY++ GSCKFG+ C+F+HP
Sbjct: 90  RPGEPDCSYYVKFGSCKFGMNCRFNHP 116


>sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa
           subsp. japonica GN=Os06g0519400 PE=2 SV=1
          Length = 279

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 34/144 (23%)

Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAA--------------------SN 188
           P+RP + DC +Y+  G CKYG +C+F+HP +R+ Q                         
Sbjct: 118 PQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVK 177

Query: 189 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY------------PINYGLSLP 236
           +  LGLP RPG  +CS Y   GICKFG  C+F HP +G              I+ G+++ 
Sbjct: 178 LNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGHEKWDGSLQTNQISSGVNI- 236

Query: 237 PLSILDSSLMNHQAISATHSIETS 260
             S+LD   +N Q + +    + S
Sbjct: 237 -YSVLDHGELNEQPVPSKDDFQVS 259



 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 5/78 (6%)

Query: 146 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSN 205
           Q  P RP  PDC YY+  G+CK+G  C ++HP +      A     L  P RPG+  C +
Sbjct: 74  QEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHPAKH-----AGGCDKLEHPQRPGEHDCLH 128

Query: 206 YSMYGICKFGPTCRFDHP 223
           Y  +G CK+G  CRF+HP
Sbjct: 129 YLRFGRCKYGMNCRFNHP 146



 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 22/30 (73%)

Query: 148 LPERPDQPDCRYYMNTGTCKYGADCKFHHP 177
           LP RP    C YYMN G CK+G++CKFHHP
Sbjct: 183 LPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212



 Score = 38.9 bits (89), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 16/25 (64%)

Query: 8   CPYYMRTGSCKFGVACKFHHPQPSS 32
           C YYM  G CKFG  CKFHHP   S
Sbjct: 192 CSYYMNRGICKFGSNCKFHHPNSGS 216



 Score = 37.7 bits (86), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 189 IGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
           + P   P RPG   CS Y  +G CKFG  C ++HP
Sbjct: 71  VEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHP 105



 Score = 36.6 bits (83), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHP 28
           R  E  C +Y+R G CK+G+ C+F+HP
Sbjct: 120 RPGEHDCLHYLRFGRCKYGMNCRFNHP 146



 Score = 33.9 bits (76), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 8   CPYYMRTGSCKFGVACKFHHP 28
           C YY+  GSCKFG+ C ++HP
Sbjct: 85  CSYYVEFGSCKFGMRCLYNHP 105


>sp|A3CEM4|C3H64_ORYSJ Putative zinc finger CCCH domain-containing protein 64 OS=Oryza
           sativa subsp. japonica GN=Os12g0129500 PE=4 SV=2
          Length = 527

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 103 NTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMN 162
           N + G +  ++   IAG ++   S     + AG  + +L    Q  PERP +P CRYYM 
Sbjct: 167 NAHDGILDDINCAQIAGKHVGDHSNCANVIKAGV-ISLLGKLVQ-YPERPGEPFCRYYMK 224

Query: 163 TGTCKYGADCKFHHPKERIAQSAASNI 189
            G CK+   CK++HPK+R +    + I
Sbjct: 225 FGECKHMTFCKYNHPKDRFSCKTTNTI 251



 Score = 35.0 bits (79), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 181 IAQSAASNIGPL-GLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
           I     S +G L   P RPG+  C  Y  +G CK    C+++HP
Sbjct: 196 IKAGVISLLGKLVQYPERPGEPFCRYYMKFGECKHMTFCKYNHP 239



 Score = 33.9 bits (76), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 2   RQDEKSCPYYMRTGSCKFGVACKFHHPQ 29
           R  E  C YYM+ G CK    CK++HP+
Sbjct: 213 RPGEPFCRYYMKFGECKHMTFCKYNHPK 240


>sp|Q9C7P1|C3H10_ARATH Putative zinc finger CCCH domain-containing protein 10
           OS=Arabidopsis thaliana GN=At1g29600/At1g29610 PE=2 SV=2
          Length = 389

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 33/117 (28%)

Query: 120 SNLIYSSRNQGDLGAGAQMH-----------ILSASSQNLPERPDQPDCRYYMNTGTCKY 168
           S L   +R Q   G+ ++M            +LS++    P RP + +C +YM    C++
Sbjct: 92  SRLWQRARTQDRRGSESRMMFDGRTQWSHAPVLSSA---YPVRPGEDNCLFYMKNHLCEW 148

Query: 169 GADCKFHHPKERIAQSAASNIGPL-GLPSRPGQAI-CSNYSMYGICKFGPTCRFDHP 223
           G++C ++HP             PL  +P R G+ + C      G CK G  C F+HP
Sbjct: 149 GSECCYNHP-------------PLQEIPCRIGKKLDCK----AGACKRGSNCPFNHP 188


>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
          Length = 325

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 14/69 (20%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQ---AICSNYSMYGICK 213
           CR +  +G C+YGA C+F H            +G L  PSR  +    +C  + + G C 
Sbjct: 107 CRTFSESGRCRYGAKCQFAH-----------GLGELRQPSRHPKYKTELCHKFYLQGRCP 155

Query: 214 FGPTCRFDH 222
           +G  C F H
Sbjct: 156 YGSRCHFIH 164


>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=zfs1 PE=1 SV=1
          Length = 404

 Score = 42.7 bits (99), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           C+ +  +GTC+YG+ C+F H  + + +       P   P    +  C ++ MYG C +G 
Sbjct: 332 CKNWQISGTCRYGSKCQFAHGNQELKE-------PPRHPKYKSER-CRSFMMYGYCPYGL 383

Query: 217 TCRFDH 222
            C F H
Sbjct: 384 RCCFLH 389



 Score = 31.6 bits (70), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 146 QNLPERPDQPD-----CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGP 191
           Q L E P  P      CR +M  G C YG  C F H +    +SA     P
Sbjct: 354 QELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCFLHDESNAQKSATIKQSP 404


>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
           musculus GN=Cpsf4 PE=2 SV=1
          Length = 211

 Score = 42.7 bits (99), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAA---SNIGPLGLPSRPGQAICSNYSMYGICK 213
           C++++  G CK G  C+F H  +          S  GPL       + IC NY + G C 
Sbjct: 68  CKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHRHTRRVICVNY-LVGFCP 125

Query: 214 FGPTCRFDHPYAGYPI 229
            GP+C+F HP    P+
Sbjct: 126 EGPSCKFMHPRFELPM 141


>sp|Q9C7P4|C3H9_ARATH Putative zinc finger CCCH domain-containing protein 9
           OS=Arabidopsis thaliana GN=At1g29570 PE=4 SV=1
          Length = 321

 Score = 42.7 bits (99), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKER 180
           P RP + DC++Y+  G C+Y + C+F+HP +R
Sbjct: 53  PVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR 84



 Score = 39.7 bits (91), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 178 KERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 223
           KER+ QS+         P RPG+  C  Y   G+C++  +CRF+HP
Sbjct: 43  KERMRQSSP-------YPVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81



 Score = 35.8 bits (81), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 6  KSCPYYMRTGSCKFGVACKFHHP 28
          K C +Y++ G C++  +C+F+HP
Sbjct: 59 KDCQFYLKNGLCRYRSSCRFNHP 81


>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
           GN=zfp36l2-A PE=2 SV=1
          Length = 363

 Score = 42.0 bits (97), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +  +G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 137 CRPFEESGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 188

Query: 217 TCRFDH 222
            C F H
Sbjct: 189 RCHFIH 194


>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
           discoideum GN=dus3l PE=3 SV=1
          Length = 671

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 27/104 (25%)

Query: 165 TCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 224
            C++   CKF H  E+   S   +IG           IC N+  YG CK+G  C F   +
Sbjct: 113 VCEFNETCKFSHDVEKYLASKPKSIG-----------ICQNFQTYGECKYGLNCYFGECH 161

Query: 225 AGYPINYGLSLPPLSILDS-SLMNHQAISATHSIETSPDASSKI 267
                          I+D+ +++N + I     ++T  + S++I
Sbjct: 162 ---------------IVDNKTIVNKELIGKVEPVKTLNEVSNEI 190


>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
           PE=1 SV=3
          Length = 494

 Score = 42.0 bits (97), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +  +GTCKYG  C+F H    +          L    +    +C  +   G C +GP
Sbjct: 159 CRPFEESGTCKYGEKCQFAHGFHELRS--------LTRHPKYKTELCRTFHTIGFCPYGP 210

Query: 217 TCRFDH 222
            C F H
Sbjct: 211 RCHFIH 216


>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
           PE=2 SV=1
          Length = 367

 Score = 41.6 bits (96), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +  +GTCKYG  C+F H    +          L    +    +C  +   G C +GP
Sbjct: 132 CRPFEESGTCKYGEKCQFAHGFHELRS--------LTRHPKYKTELCRTFHTIGFCPYGP 183

Query: 217 TCRFDH 222
            C F H
Sbjct: 184 RCHFIH 189


>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
           GN=zfp36l2-B PE=2 SV=1
          Length = 364

 Score = 41.2 bits (95), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +   G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 139 CRPFEENGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 190

Query: 217 TCRFDH 222
            C F H
Sbjct: 191 RCHFIH 196


>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
          Length = 547

 Score = 41.2 bits (95), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 20/70 (28%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           C+++ N GTC  G +C F H  E                 RP   IC  Y + G CKFGP
Sbjct: 47  CKFFRN-GTCTAGENCPFSHSLET---------------ERP---IC-KYFLKGNCKFGP 86

Query: 217 TCRFDHPYAG 226
            C   H   G
Sbjct: 87  KCALSHALPG 96


>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
          Length = 320

 Score = 41.2 bits (95), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR Y  +G C+YGA C+F H    + Q   +N  P     +    +C  + + G C +G 
Sbjct: 102 CRTYSESGRCRYGAKCQFAHGPGELRQ---ANRHP-----KYKTELCHKFYLQGRCPYGS 153

Query: 217 TCRFDH 222
            C F H
Sbjct: 154 RCHFIH 159


>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
          Length = 319

 Score = 41.2 bits (95), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR Y  +G C+YGA C+F H    + Q   +N  P     +    +C  + + G C +G 
Sbjct: 101 CRTYSESGRCRYGAKCQFAHGLGELRQ---ANRHP-----KYKTELCHKFYLQGRCPYGS 152

Query: 217 TCRFDH 222
            C F H
Sbjct: 153 RCHFIH 158


>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
          Length = 436

 Score = 41.2 bits (95), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 21/114 (18%)

Query: 118 AGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPD---------CRYYMNTGTCKY 168
           A ++L+  + N G++     +H     +Q+ P  P QP          CR +   G CKY
Sbjct: 97  AVASLVTITENLGNM----NLHRKLERTQSEPLPPQQPMNTSRYKTELCRPFEEAGECKY 152

Query: 169 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 222
           G  C+F H    +               +     C  +   G C +GP C F H
Sbjct: 153 GEKCQFAHGSHELRNVHRH--------PKYKTEYCRTFHSVGFCPYGPRCHFVH 198


>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
           PE=1 SV=1
          Length = 338

 Score = 40.8 bits (94), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +   G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171

Query: 217 TCRFDH 222
            C F H
Sbjct: 172 RCHFIH 177


>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
           GN=Zfp36l1 PE=1 SV=1
          Length = 338

 Score = 40.8 bits (94), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +   G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171

Query: 217 TCRFDH 222
            C F H
Sbjct: 172 RCHFIH 177


>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
           PE=1 SV=1
          Length = 338

 Score = 40.4 bits (93), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +   G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 120 CRPFEENGACKYGDKCQFAH--------GIHELRSLTRHPKYKTELCRTFHTIGFCPYGP 171

Query: 217 TCRFDH 222
            C F H
Sbjct: 172 RCHFIH 177


>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
          Length = 324

 Score = 40.0 bits (92), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 14/69 (20%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQ---AICSNYSMYGICK 213
           CR +  +G C+YGA C+F H            +G L   SR  +    +C  + + G C 
Sbjct: 107 CRTFSESGRCRYGAKCQFAH-----------GLGELRQASRHPKYKTELCHKFYLQGRCP 155

Query: 214 FGPTCRFDH 222
           +G  C F H
Sbjct: 156 YGSRCHFIH 164


>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
          Length = 326

 Score = 39.7 bits (91), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +  +G C+YGA C+F H    + Q   +N  P     +    +C  + + G C +G 
Sbjct: 109 CRTFSESGRCRYGAKCQFAHGLGELRQ---ANRHP-----KYKTELCHKFYLQGRCPYGS 160

Query: 217 TCRFDH 222
            C F H
Sbjct: 161 RCHFIH 166


>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
           nigroviridis GN=mkrn1 PE=3 SV=1
          Length = 372

 Score = 39.7 bits (91), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 17/66 (25%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CRY+M+ G CK G +C++ H          +N       S+P   IC  +   G C FG 
Sbjct: 24  CRYFMH-GLCKEGDNCRYSHD--------LTN-------SKPAAMICKFFQK-GNCVFGE 66

Query: 217 TCRFDH 222
            CRFDH
Sbjct: 67  RCRFDH 72


>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
           GN=zfp36l2 PE=2 SV=1
          Length = 333

 Score = 39.7 bits (91), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           CR +  +G CKYG  C+F H            +  L    +    +C  +   G C +GP
Sbjct: 107 CRPFEESGACKYGEKCQFAH--------GFHELRSLTRHPKYKTELCRTFHTIGFCPYGP 158

Query: 217 TCRFDH 222
            C   H
Sbjct: 159 RCHLIH 164


>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz
           PE=2 SV=1
          Length = 1860

 Score = 39.7 bits (91), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 112 LSPTSIAGSNLIYSSRNQGDLGAGAQMH-----ILSASSQNLPERPDQPDCRYYMNTGTC 166
           LS    A S +++S  N+ D+  G Q       + S+    L        C+ ++  G C
Sbjct: 132 LSEIEAARSKVVFSEENEEDVQEGWQFRPPPRGVTSSEEYTL--------CKRFLEQGLC 183

Query: 167 KYGADCKFHHPKERIAQ 183
           +YGA C   H +E + +
Sbjct: 184 RYGAQCTSAHSQEELTE 200


>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
           OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
          Length = 269

 Score = 39.3 bits (90), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
           P+C +Y   G C    +C F H  P+ +I             GPL       + IC NY 
Sbjct: 94  PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151

Query: 208 MYGICKFGPTCRFDHPYAGYPINYGLSLPPL 238
           + G C  GP C+F HP    P+      PPL
Sbjct: 152 LVGFCIEGPNCKFMHPRFELPMGTA-EQPPL 181


>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain JEC21 / ATCC MYA-565)
           GN=YTH1 PE=3 SV=1
          Length = 332

 Score = 39.3 bits (90), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 155 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL-PSRPGQAI----CSNYSMY 209
           P C +++  G C+ G +C + HP++R  +    N G   L P+ P + I    C  Y+  
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183

Query: 210 GICKFGPTCRFDHP 223
           G C  G  C+  HP
Sbjct: 184 GFCPDGKDCKLAHP 197


>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
           neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
          Length = 332

 Score = 39.3 bits (90), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 155 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL-PSRPGQAI----CSNYSMY 209
           P C +++  G C+ G +C + HP++R  +    N G   L P+ P + I    C  Y+  
Sbjct: 125 PVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYAA- 183

Query: 210 GICKFGPTCRFDHP 223
           G C  G  C+  HP
Sbjct: 184 GFCPDGKDCKLAHP 197


>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=CTH1 PE=1 SV=2
          Length = 325

 Score = 39.3 bits (90), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 157 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 216
           C  +   G CKYG  C+F H    +     SN       ++P    C N+S  G C +G 
Sbjct: 210 CESFTIKGYCKYGNKCQFAHGLNELKFKKKSN----NYRTKP----CINWSKLGYCPYGK 261

Query: 217 TCRFDH 222
            C F H
Sbjct: 262 RCCFKH 267


>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
           subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
           SV=2
          Length = 479

 Score = 38.9 bits (89), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 1   MRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 46
           M +D  +CP+Y +TG+C+FG  C   H  P+S  T L  +   + G
Sbjct: 170 MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFG 215


>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4
           OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1
          Length = 269

 Score = 38.9 bits (89), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 155 PDCRYYMNTGTCKYGADCKFHH--PKERIAQS-----AASNIGPLGLPSRPGQAICSNYS 207
           P+C +Y   G C    +C F H  P+ +I             GPL       + IC NY 
Sbjct: 94  PECYFYSKFGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNY- 151

Query: 208 MYGICKFGPTCRFDHPYAGYPI 229
           + G C  GP C+F HP    P+
Sbjct: 152 LVGFCIEGPNCKFMHPRFELPM 173


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.130    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,688,404
Number of Sequences: 539616
Number of extensions: 5484657
Number of successful extensions: 12442
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 11534
Number of HSP's gapped (non-prelim): 814
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)