Query 020994
Match_columns 319
No_of_seqs 260 out of 1099
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.6 2.7E-16 9.4E-21 119.9 3.6 68 150-225 8-75 (77)
2 2cqe_A KIAA1064 protein; CCCH 99.4 1.5E-13 5.2E-18 111.1 5.5 57 146-225 5-61 (98)
3 2d9n_A Cleavage and polyadenyl 99.3 4.1E-13 1.4E-17 103.8 3.7 57 151-226 7-63 (77)
4 2rhk_C Cleavage and polyadenyl 99.3 4.4E-13 1.5E-17 102.8 2.2 59 149-226 11-69 (72)
5 1m9o_A Tristetraproline; Cys3H 99.1 2.8E-11 9.6E-16 92.0 3.6 26 4-29 11-36 (77)
6 3d2q_A Muscleblind-like protei 99.1 1.9E-11 6.6E-16 92.9 1.9 61 153-226 5-66 (70)
7 2e5s_A Otthump00000018578; ZF- 99.1 1.7E-11 5.7E-16 99.4 0.2 65 149-226 15-80 (98)
8 2cqe_A KIAA1064 protein; CCCH 98.9 2.1E-10 7.3E-15 92.6 1.8 56 156-211 38-95 (98)
9 2d9n_A Cleavage and polyadenyl 98.8 1.8E-09 6.3E-14 83.2 4.3 36 156-210 40-75 (77)
10 3d2n_A Muscleblind-like protei 98.8 1.1E-09 3.8E-14 86.3 3.0 59 153-226 8-67 (83)
11 2rpp_A Muscleblind-like protei 98.6 6.5E-09 2.2E-13 83.1 2.0 59 153-226 16-75 (89)
12 2rhk_C Cleavage and polyadenyl 98.4 8.4E-08 2.9E-12 73.4 2.3 26 2-28 13-38 (72)
13 3d2q_A Muscleblind-like protei 97.9 4.8E-06 1.7E-10 63.0 2.9 26 154-181 42-67 (70)
14 2d9m_A Zinc finger CCCH-type d 97.9 3.7E-06 1.3E-10 64.5 2.0 30 153-183 19-48 (69)
15 2e5s_A Otthump00000018578; ZF- 97.8 3E-06 1E-10 68.4 0.8 25 155-181 57-81 (98)
16 3d2n_A Muscleblind-like protei 97.5 4.4E-05 1.5E-09 60.0 3.4 25 155-181 44-68 (83)
17 3u9g_A Zinc finger CCCH-type a 97.3 7.2E-05 2.5E-09 68.8 2.4 28 153-181 88-119 (229)
18 3u9g_A Zinc finger CCCH-type a 97.2 0.00022 7.6E-09 65.6 3.6 43 155-225 152-198 (229)
19 2d9m_A Zinc finger CCCH-type d 97.0 5.9E-05 2E-09 57.9 -1.2 28 199-227 19-46 (69)
20 2fc6_A Nuclear, target of EGR1 96.5 0.00085 2.9E-08 48.4 1.7 28 199-226 19-46 (50)
21 2fc6_A Nuclear, target of EGR1 95.9 0.0019 6.3E-08 46.7 0.9 28 152-179 18-45 (50)
22 2rpp_A Muscleblind-like protei 95.4 0.0065 2.2E-07 48.3 2.2 26 200-226 17-43 (89)
23 2lhn_A Nuclear polyadenylated 94.0 0.0042 1.4E-07 48.7 0.0 22 154-179 9-30 (80)
24 3u1l_A PRE-mRNA-splicing facto 93.9 0.014 4.8E-07 53.5 0.9 25 153-178 69-93 (240)
25 2lhn_A Nuclear polyadenylated 92.6 0.013 4.6E-07 45.8 0.0 43 155-226 32-74 (80)
26 3u1l_A PRE-mRNA-splicing facto 92.1 0.042 1.4E-06 50.3 1.2 28 4-32 69-96 (240)
27 3v33_A Ribonuclease ZC3H12A; r 80.5 0.33 1.1E-05 44.4 0.0 25 153-180 191-215 (223)
28 3v33_A Ribonuclease ZC3H12A; r 80.0 0.35 1.2E-05 44.2 0.0 25 199-226 191-215 (223)
29 2kqb_A Aprataxin and PNK-like 58.0 3.7 0.00013 32.7 1.4 20 210-229 57-76 (89)
30 2kuo_A Aprataxin and PNK-like 36.9 7.8 0.00027 31.0 0.2 12 210-221 62-73 (91)
31 1ans_A Neurotoxin III; NMR {An 21.8 42 0.0014 21.0 1.5 15 8-24 4-18 (27)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.60 E-value=2.7e-16 Score=119.88 Aligned_cols=68 Identities=31% Similarity=0.759 Sum_probs=30.5
Q ss_pred CCCCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 020994 150 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 225 (319)
Q Consensus 150 erpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~ 225 (319)
.+.++.+|++|+++|.|++|++|+|+|+.++++... ..| +.++.+|++|..+|.|++|++|+|.|...
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~-------~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN-------RHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc-------ccc-cccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 456889999998789999999999999998875422 112 34578999888789999999999999865
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.41 E-value=1.5e-13 Score=111.12 Aligned_cols=57 Identities=25% Similarity=0.579 Sum_probs=49.6
Q ss_pred cCCCCCCCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 020994 146 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 225 (319)
Q Consensus 146 ~~fPerpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~ 225 (319)
+.+..+.++.+|+||++ |.|++|++|+|+|+ +.+|++|++.|.|++|++|+|.|...
T Consensus 5 H~~~~~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 5 SSGELPKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCCCSCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred ccCCCCCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 34556678999999985 99999999999997 36899997669999999999999964
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.1e-13 Score=103.76 Aligned_cols=57 Identities=28% Similarity=0.613 Sum_probs=49.5
Q ss_pred CCCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994 151 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226 (319)
Q Consensus 151 rpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~ 226 (319)
..++.+|+||++ |.|++|++|+|+|+.+.. +.++|+||+++|.|. |++|+|.|....
T Consensus 7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CCcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 356789999999 999999999999987531 256899999999999 999999999864
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.31 E-value=4.4e-13 Score=102.85 Aligned_cols=59 Identities=27% Similarity=0.565 Sum_probs=50.7
Q ss_pred CCCCCCcccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994 149 PERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226 (319)
Q Consensus 149 Perpgq~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~ 226 (319)
....++.+|+||++ |.|++|++|+|+|+.+.. +.++|+||+++|.|.+ ++|+|.|....
T Consensus 11 ~~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 11 MSGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SSCCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCCCcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 34567889999999 999999999999986421 3579999999999999 99999999764
No 5
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.11 E-value=2.8e-11 Score=92.03 Aligned_cols=26 Identities=31% Similarity=0.903 Sum_probs=23.8
Q ss_pred CCCCcccccccCCCCCCCCCccCCCC
Q 020994 4 DEKSCPYYMRTGSCKFGVACKFHHPQ 29 (319)
Q Consensus 4 ~e~~C~~y~~tg~C~fG~~Ckf~Hp~ 29 (319)
..+.|.+|+++|.|+||+.|+|.|..
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~ 36 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGL 36 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSS
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCC
Confidence 45789999999999999999999975
No 6
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.09 E-value=1.9e-11 Score=92.88 Aligned_cols=61 Identities=31% Similarity=0.730 Sum_probs=48.8
Q ss_pred CCcccccccccCcCCCCC-CCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994 153 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226 (319)
Q Consensus 153 gq~lCryF~ktG~CKfG~-~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~ 226 (319)
+..+|++|++ |.|+.|+ .|+|+|+.+..... +...+..+|.+|++ |.|..| .|+|.|+...
T Consensus 5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~ 66 (70)
T 3d2q_A 5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAH 66 (70)
T ss_dssp EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHH
T ss_pred cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHH
Confidence 3468999987 9999999 59999988654211 11234789999999 999999 9999998754
No 7
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.7e-11 Score=99.37 Aligned_cols=65 Identities=29% Similarity=0.654 Sum_probs=51.9
Q ss_pred CCCCCCcccccccccCcCCCCC-CCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994 149 PERPDQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226 (319)
Q Consensus 149 Perpgq~lCryF~ktG~CKfG~-~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~ 226 (319)
....+..+|++|++ |.|+.|+ .|+|+|+.+..... +......+|.+|++ |.|..| .|+|.|+...
T Consensus 15 ~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 15 LRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp CCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred cChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChHH
Confidence 34445679999999 9999999 79999998754211 11235689999999 999999 9999999754
No 8
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.93 E-value=2.1e-10 Score=92.64 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=38.2
Q ss_pred ccccccccCcCCCCCCCCCCCcchhhhccc--cccCCCCCCCCCCCCccccccccccc
Q 020994 156 DCRYYMNTGTCKYGADCKFHHPKERIAQSA--ASNIGPLGLPSRPGQAICSNYSMYGI 211 (319)
Q Consensus 156 lCryF~ktG~CKfG~~CrFsH~~~~~~~~~--~~~ls~~glP~r~~~~~C~~y~r~G~ 211 (319)
+|++|+.+|.|++|++|+|+|+........ ...|...+.+.+.+++.|..+.++|+
T Consensus 38 ~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~ 95 (98)
T 2cqe_A 38 PCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKSGP 95 (98)
T ss_dssp BCSHHHHTSCCSSCTTCSSBCCCCCHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred cCcCcccCCcCCCCCCCcccCCCCcccchhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence 599997669999999999999854321110 01122223355777899999998775
No 9
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.8e-09 Score=83.19 Aligned_cols=36 Identities=22% Similarity=0.566 Sum_probs=30.7
Q ss_pred ccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccc
Q 020994 156 DCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYG 210 (319)
Q Consensus 156 lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G 210 (319)
+|+||+++|.|. |++|+|.|.... .++.+|.+|++ |
T Consensus 40 ~C~~f~~~G~C~-~~~C~f~H~~~~-----------------~~~~~C~~f~~-g 75 (77)
T 2d9n_A 40 ECYFYSKFGECS-NKECPFLHIDPE-----------------SKIKDCPWSGP-S 75 (77)
T ss_dssp BCHHHHHTCCCC-CSSCSSBCCCTT-----------------SSCSSSSCCTT-T
T ss_pred CCcccCCCCccC-CCCeeccCCCcc-----------------ccCCCCccccc-C
Confidence 799999989999 999999997632 24689999998 5
No 10
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=86.34 Aligned_cols=59 Identities=27% Similarity=0.581 Sum_probs=48.0
Q ss_pred CCcccccccccCcCCCCC-CCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994 153 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226 (319)
Q Consensus 153 gq~lCryF~ktG~CKfG~-~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~ 226 (319)
+..+|++|++ |.|+.|+ .|+|+|+....... .-...+|.+|++ |.|..+ .|+|.|+...
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence 4568999999 9999997 99999998643110 123689999999 999999 9999999753
No 11
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.65 E-value=6.5e-09 Score=83.06 Aligned_cols=59 Identities=27% Similarity=0.591 Sum_probs=48.1
Q ss_pred CCcccccccccCcCCCCC-CCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994 153 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226 (319)
Q Consensus 153 gq~lCryF~ktG~CKfG~-~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~ 226 (319)
+.++|+.|++ |.|+.|+ .|+|+|+.+.... . .-...+|..|++ |.|..+ .|+|.|+...
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v-----------~-~~~~~vC~dflk-G~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV-----------E-NGRVIACFDSLK-GRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC-----------B-TTBEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCccccc-----------c-CCceeeehhhhh-CcCCCC-CcceecCHHH
Confidence 3579999999 9999998 9999998865311 0 123689999999 999998 9999999753
No 12
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.41 E-value=8.4e-08 Score=73.39 Aligned_cols=26 Identities=35% Similarity=0.787 Sum_probs=23.5
Q ss_pred CCCCCCcccccccCCCCCCCCCccCCC
Q 020994 2 RQDEKSCPYYMRTGSCKFGVACKFHHP 28 (319)
Q Consensus 2 R~~e~~C~~y~~tg~C~fG~~Ckf~Hp 28 (319)
+.....|.|||+ |.|+.|++|+|.|.
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHE 38 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCS
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccc
Confidence 356789999999 99999999999997
No 13
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.91 E-value=4.8e-06 Score=62.96 Aligned_cols=26 Identities=31% Similarity=0.843 Sum_probs=23.1
Q ss_pred CcccccccccCcCCCCCCCCCCCcchhh
Q 020994 154 QPDCRYYMNTGTCKYGADCKFHHPKERI 181 (319)
Q Consensus 154 q~lCryF~ktG~CKfG~~CrFsH~~~~~ 181 (319)
.++|++|++ |.|.+| +|+|.|....+
T Consensus 42 ~~vC~~flk-G~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 42 VTVCMDYIK-GRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp EEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred ceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence 358999999 999999 99999988765
No 14
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=3.7e-06 Score=64.53 Aligned_cols=30 Identities=40% Similarity=0.787 Sum_probs=26.7
Q ss_pred CCcccccccccCcCCCCCCCCCCCcchhhhc
Q 020994 153 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQ 183 (319)
Q Consensus 153 gq~lCryF~ktG~CKfG~~CrFsH~~~~~~~ 183 (319)
+..+|++|++ |.|+||++|.|+|+.++++.
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCHHHHhh
Confidence 4589999965 99999999999999999865
No 15
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=3e-06 Score=68.43 Aligned_cols=25 Identities=32% Similarity=0.877 Sum_probs=22.6
Q ss_pred cccccccccCcCCCCCCCCCCCcchhh
Q 020994 155 PDCRYYMNTGTCKYGADCKFHHPKERI 181 (319)
Q Consensus 155 ~lCryF~ktG~CKfG~~CrFsH~~~~~ 181 (319)
.+|++|++ |.|.+| +|+|.|....+
T Consensus 57 ~vC~~flk-G~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 57 TVCMDYIK-GRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp EBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred ccchhhcc-CCCCCC-CcCccCChHHH
Confidence 48999999 999999 99999988765
No 16
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.55 E-value=4.4e-05 Score=59.98 Aligned_cols=25 Identities=28% Similarity=0.743 Sum_probs=22.2
Q ss_pred cccccccccCcCCCCCCCCCCCcchhh
Q 020994 155 PDCRYYMNTGTCKYGADCKFHHPKERI 181 (319)
Q Consensus 155 ~lCryF~ktG~CKfG~~CrFsH~~~~~ 181 (319)
.+|.+|++ |.|..+ +|+|.|+...+
T Consensus 44 ~vC~dflk-G~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 44 IACFDSLK-GRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp ECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred eehhHhhh-ccccCC-CcceeCChHHH
Confidence 47999999 999999 89999987655
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.33 E-value=7.2e-05 Score=68.83 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=22.4
Q ss_pred CCcccccccccCcCC----CCCCCCCCCcchhh
Q 020994 153 DQPDCRYYMNTGTCK----YGADCKFHHPKERI 181 (319)
Q Consensus 153 gq~lCryF~ktG~CK----fG~~CrFsH~~~~~ 181 (319)
.-.+|++|+. |.|+ .+..|||+|+....
T Consensus 88 ~LHLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~ 119 (229)
T 3u9g_A 88 SLHLCKLNLL-GRCHYAQSQRNLCKYSHDVLSE 119 (229)
T ss_dssp SBCCCHHHHT-TCCGGGTCCSSCCSSCSCTTCH
T ss_pred ceeechhhhc-CcCCcccCCCCCcccccccCch
Confidence 3579999998 9993 35789999998654
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.15 E-value=0.00022 Score=65.61 Aligned_cols=43 Identities=28% Similarity=0.685 Sum_probs=37.1
Q ss_pred ccccccccc----CcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 020994 155 PDCRYYMNT----GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 225 (319)
Q Consensus 155 ~lCryF~kt----G~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~ 225 (319)
++|.+| +. |.|+++++|...| +|++|++ |.|+| .+||..|...
T Consensus 152 eiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~ 198 (229)
T 3u9g_A 152 EICKSY-KGEGRKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLM 198 (229)
T ss_dssp CBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred hHHHHh-CCCCCCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCcc
Confidence 489999 72 5799999887666 8999999 99999 8999999974
No 19
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=5.9e-05 Score=57.85 Aligned_cols=28 Identities=36% Similarity=0.723 Sum_probs=24.0
Q ss_pred CCcccccccccccCCCCCCCCCCCCCCCC
Q 020994 199 GQAICSNYSMYGICKFGPTCRFDHPYAGY 227 (319)
Q Consensus 199 ~~~~C~~y~r~G~CkfG~~CkF~Hp~~~l 227 (319)
+..+|++|.. |.|+||++|.|+|...+|
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCHHHH
Confidence 3589999955 999999999999987654
No 20
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.53 E-value=0.00085 Score=48.44 Aligned_cols=28 Identities=43% Similarity=1.028 Sum_probs=25.9
Q ss_pred CCcccccccccccCCCCCCCCCCCCCCC
Q 020994 199 GQAICSNYSMYGICKFGPTCRFDHPYAG 226 (319)
Q Consensus 199 ~~~~C~~y~r~G~CkfG~~CkF~Hp~~~ 226 (319)
.+.+|..|..+|+|+.|.+|.|.|....
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCC
Confidence 5789999999999999999999999864
No 21
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.95 E-value=0.0019 Score=46.67 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=26.0
Q ss_pred CCCcccccccccCcCCCCCCCCCCCcch
Q 020994 152 PDQPDCRYYMNTGTCKYGADCKFHHPKE 179 (319)
Q Consensus 152 pgq~lCryF~ktG~CKfG~~CrFsH~~~ 179 (319)
.++.+|+.|...|.|++|.+|.++|+.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 4678999999999999999999999886
No 22
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.37 E-value=0.0065 Score=48.28 Aligned_cols=26 Identities=27% Similarity=0.801 Sum_probs=23.8
Q ss_pred CcccccccccccCCCCC-CCCCCCCCCC
Q 020994 200 QAICSNYSMYGICKFGP-TCRFDHPYAG 226 (319)
Q Consensus 200 ~~~C~~y~r~G~CkfG~-~CkF~Hp~~~ 226 (319)
..+|+.|++ |.|+.|+ .|+|.|+...
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSS
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCcc
Confidence 569999999 9999998 9999999864
No 23
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=93.98 E-value=0.0042 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.815 Sum_probs=18.6
Q ss_pred CcccccccccCcCCCCCCCCCCCcch
Q 020994 154 QPDCRYYMNTGTCKYGADCKFHHPKE 179 (319)
Q Consensus 154 q~lCryF~ktG~CKfG~~CrFsH~~~ 179 (319)
.+.|+||.. |+. ..|.|.|+..
T Consensus 9 ~e~CKf~~~---Ctn-~~C~f~Hp~~ 30 (80)
T 2lhn_A 9 LEQCKFGTH---CTN-KRCKYRHARS 30 (80)
Confidence 357999998 999 9999999763
No 24
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.90 E-value=0.014 Score=53.53 Aligned_cols=25 Identities=24% Similarity=0.685 Sum_probs=22.5
Q ss_pred CCcccccccccCcCCCCCCCCCCCcc
Q 020994 153 DQPDCRYYMNTGTCKYGADCKFHHPK 178 (319)
Q Consensus 153 gq~lCryF~ktG~CKfG~~CrFsH~~ 178 (319)
...+|-||.+ |.|+.|+.|.|.|..
T Consensus 69 ~~~~C~ffak-G~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 69 QLFFCLFFAK-GMCCLGPKCEYLHHI 93 (240)
T ss_dssp CCSBCHHHHT-TCCSCGGGCSSBBSC
T ss_pred CCeEcCcccc-CCCCCCCCCCccCCC
Confidence 4569999999 999999999999964
No 25
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=92.59 E-value=0.013 Score=45.83 Aligned_cols=43 Identities=37% Similarity=0.602 Sum_probs=32.5
Q ss_pred cccccccccCcCCCCCCCCCCCcchhhhccccccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 020994 155 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 226 (319)
Q Consensus 155 ~lCryF~ktG~CKfG~~CrFsH~~~~~~~~~~~~ls~~glP~r~~~~~C~~y~r~G~CkfG~~CkF~Hp~~~ 226 (319)
..|+|+.. |+. .+|.|.|+. ...|+|+. .|+. ..|.|.|+...
T Consensus 32 ~~Cr~g~~---C~~-~~C~f~HP~---------------------~~~Crf~~---~C~n-~~C~F~Hp~g~ 74 (80)
T 2lhn_A 32 IMCREGAN---CTR-IDCLFGHPI---------------------NEDCRFGV---NCKN-IYCLFRHPPGR 74 (80)
Confidence 36888776 887 679999962 25688765 5887 89999999654
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.06 E-value=0.042 Score=50.33 Aligned_cols=28 Identities=25% Similarity=0.725 Sum_probs=24.9
Q ss_pred CCCCcccccccCCCCCCCCCccCCCCCCC
Q 020994 4 DEKSCPYYMRTGSCKFGVACKFHHPQPSS 32 (319)
Q Consensus 4 ~e~~C~~y~~tg~C~fG~~Ckf~Hp~~~~ 32 (319)
...-|.||.| |.|+.|+.|.|.|-.|..
T Consensus 69 ~~~~C~ffak-G~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 69 QLFFCLFFAK-GMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CCSBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred CCeEcCcccc-CCCCCCCCCCccCCCCCc
Confidence 3458999999 999999999999998874
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=80.46 E-value=0.33 Score=44.41 Aligned_cols=25 Identities=36% Similarity=0.998 Sum_probs=0.0
Q ss_pred CCcccccccccCcCCCCCCCCCCCcchh
Q 020994 153 DQPDCRYYMNTGTCKYGADCKFHHPKER 180 (319)
Q Consensus 153 gq~lCryF~ktG~CKfG~~CrFsH~~~~ 180 (319)
+...|.|=.| |.||.+|||.|++..
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGRK---CTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCcc---cccCCcceecCCccC
Confidence 4668999776 999999999998743
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=79.98 E-value=0.35 Score=44.24 Aligned_cols=25 Identities=32% Similarity=0.668 Sum_probs=0.0
Q ss_pred CCcccccccccccCCCCCCCCCCCCCCC
Q 020994 199 GQAICSNYSMYGICKFGPTCRFDHPYAG 226 (319)
Q Consensus 199 ~~~~C~~y~r~G~CkfG~~CkF~Hp~~~ 226 (319)
+..+|.|-. .|.||.+|||.|+...
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGR---KCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCc---ccccCCcceecCCccC
Confidence 356899854 5999999999999864
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=58.00 E-value=3.7 Score=32.73 Aligned_cols=20 Identities=25% Similarity=0.628 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCC
Q 020994 210 GICKFGPTCRFDHPYAGYPI 229 (319)
Q Consensus 210 G~CkfG~~CkF~Hp~~~l~y 229 (319)
-.|+||.+|--..+.....|
T Consensus 57 p~C~YG~~CYRkNp~H~~ey 76 (89)
T 2kqb_A 57 PECPYGPSCYRKNPQHKIEY 76 (89)
T ss_dssp --------------------
T ss_pred CCCCCchhhhcCCHHHHHhc
Confidence 46999999977766655544
No 30
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=36.87 E-value=7.8 Score=30.97 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=9.0
Q ss_pred ccCCCCCCCCCC
Q 020994 210 GICKFGPTCRFD 221 (319)
Q Consensus 210 G~CkfG~~CkF~ 221 (319)
-.|+||.+|--.
T Consensus 62 p~C~YG~~CYRk 73 (91)
T 2kuo_A 62 PECPYGPSCYRK 73 (91)
T ss_dssp CBCTTGGGCCCC
T ss_pred CCCCCchhhhcC
Confidence 468999999543
No 31
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=21.81 E-value=42 Score=21.02 Aligned_cols=15 Identities=47% Similarity=1.300 Sum_probs=11.9
Q ss_pred cccccccCCCCCCCCCc
Q 020994 8 CPYYMRTGSCKFGVACK 24 (319)
Q Consensus 8 C~~y~~tg~C~fG~~Ck 24 (319)
|+-| +|.|.+|.+|.
T Consensus 4 CPC~--~~gCpWGQ~~~ 18 (27)
T 1ans_A 4 CPCY--WGGCPWGQNCY 18 (27)
T ss_dssp CCST--TTTCSSSCSSC
T ss_pred cccc--ccCCccccccc
Confidence 5556 59999999984
Done!