BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020995
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 26/169 (15%)
Query: 32 IGGMLSAGTAHLAITPLDVVKVNMQVH--------PIKYSSIASCYTNLLKEQGASAFWR 83
+ G ++A + A+ P++ VK+ +QV +Y I C + KEQG +FWR
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 84 GSAAKFFGYGAQGGCRFGLYEYFKSLYSSVLGDCXXXXXXXXXXXXXXXXXNVA----LC 139
G+ A Y F + +K ++ LG A LC
Sbjct: 72 GNLANVIRYFPTQALNFAFKDKYKQIF---LGGVDRHKQFWRYFAGNLASGGAAGATSLC 128
Query: 140 ---PFEAIKVQV-------QAQPHFAKGLADGIPKLYASEGIFGFYRGL 178
P + + ++ AQ F GL + I K++ S+G+ G Y+G
Sbjct: 129 FVYPLDFARTRLAADVGKGAAQREFT-GLGNCITKIFKSDGLRGLYQGF 176
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 28 SICAIGGMLSAGTAHLAITPLDVVKVNMQVH------PIKYSSIASCYTNLLKEQGASAF 81
++ A+ G++S P D V+ M + I Y+ C+ + K++G AF
Sbjct: 218 TVTAVAGLVS--------YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAF 269
Query: 82 WRGS 85
++G+
Sbjct: 270 FKGA 273
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 85/240 (35%), Gaps = 28/240 (11%)
Query: 32 IGGMLSAGTAHLAITPLDVVKVNMQVH-----------PIKYSSIASCYTNLLKEQGASA 80
+G +A A L PLD KV +Q+ +Y + +++ +G +
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 81 FWRGSAAKFFGYGAQGGCRFGLYEYFKSLYSSVLGDCXXXXXXXXXXXXXXXXXNVALC- 139
+ G A + R GLY+ K Y+ G VA+
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSEHAGIGSRLLAGSTTGALAVAVAQ 123
Query: 140 PFEAIKVQVQAQPHFAKG-----LADGIPKLYASEGIFGFYRGLIPLLGRNLPFSIVMFS 194
P + +KV+ QAQ G + + EGI G ++G P + RN +
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183
Query: 195 TFEHSVDFFYRNVLRRTKEDCSKTQQLGVTCIAGYAAGSFGSFISNPADNIVASLYNKKA 254
T++ D + L C T G AG + I++P D +V + Y A
Sbjct: 184 TYDLIKDTLLKANLMTDDLPCHFTSAFG--------AGFCTTVIASPVD-VVKTRYMNSA 234
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 46 TPLDVVKVN-MQVHPIKYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGCRFGLYE 104
+P+DVVK M +Y S C +L+++G AF++G F G+ F YE
Sbjct: 221 SPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYE 280
Query: 105 YFK 107
K
Sbjct: 281 QLK 283
>pdb|3SR7|A Chain A, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|B Chain B, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|C Chain C, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|D Chain D, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
Length = 365
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 179 IPLLGRNLP---FSIVMFSTFEHSVDF---FYRNVL----RRTKEDCSKTQQLGVTCIAG 228
I L+ +LP + + ST DF FY N + ++ KE K Q+ TC
Sbjct: 59 IELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLL 118
Query: 229 YAAGSFGSFISNPADNIVASLYNKKADSLMLAVKKIGL 266
+ GS+ + + NP D S KK+ +L IGL
Sbjct: 119 FVTGSYSTALKNPDD---TSYQVKKSRPHLLLATNIGL 153
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 218 TQQLGVTCIAGYAAGSFGSFISNPADNIV 246
T + G C AG AG F S ISNP N++
Sbjct: 42 TVEYGAACFAGEQAGHFYSRISNPTLNLL 70
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 218 TQQLGVTCIAGYAAGSFGSFISNPADNIV 246
T + G C AG AG F S ISNP N++
Sbjct: 42 TVEYGAACFAGEQAGHFYSRISNPTLNLL 70
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 218 TQQLGVTCIAGYAAGSFGSFISNPADNIV 246
T + G C AG AG F S ISNP N++
Sbjct: 42 TVEYGAACFAGEQAGHFYSRISNPTLNLL 70
>pdb|2Q2R|A Chain A, Trypanosoma Cruzi Glucokinase In Complex With
Beta-D-Glucose And Adp
pdb|2Q2R|B Chain B, Trypanosoma Cruzi Glucokinase In Complex With
Beta-D-Glucose And Adp
Length = 373
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 25/112 (22%)
Query: 192 MFSTFEHSV-----DFFYRNVLRRTKEDCSKTQQLGVTCIAGYAAGSFGSFISNPADNIV 246
+F +E+ V +F YR V+R ++ CS AG S N
Sbjct: 237 LFPNYENMVSGAGLEFHYRQVVRGSRPPCS--------------AGEIAKLASEGDANAC 282
Query: 247 ASLYNKKADSLMLAVKKIGLISLFTRSLPIRIMLVGPVVTLQWFFYDTIKVL 298
++ KK ++ V ++L LP+ I+LVG + FFY + L
Sbjct: 283 KAM--KKYHEYLMRVGSEASMAL----LPLTIVLVGDNIVNNAFFYRNPQNL 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,853,626
Number of Sequences: 62578
Number of extensions: 330451
Number of successful extensions: 579
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 16
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)