Query 020995
Match_columns 318
No_of_seqs 159 out of 1697
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 11:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.2E-55 1.1E-59 389.0 19.1 262 30-301 4-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2E-53 6.9E-58 376.6 24.1 263 25-299 5-297 (297)
3 2lck_A Mitochondrial uncouplin 100.0 1.6E-35 5.6E-40 262.3 14.0 181 25-205 102-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 7.7E-34 2.6E-38 250.9 16.6 174 26-202 111-296 (297)
5 3f2e_A SIRV coat protein; four 31.4 18 0.00063 23.7 1.2 67 55-140 1-71 (100)
6 4b19_A PEPA1; toxin, toxin apo 20.7 24 0.00082 18.6 0.2 23 222-244 4-26 (30)
7 3vjj_A P9-1; 3.00A {Rice black 18.4 72 0.0024 26.6 2.7 34 233-266 273-308 (368)
8 3tgu_G UQCRQ, mitochondrial ub 17.7 90 0.0031 20.8 2.6 36 264-300 32-67 (81)
9 1pp9_G Ubiquinol-cytochrome C 15.3 1E+02 0.0035 20.4 2.4 37 263-300 31-67 (81)
10 3vjj_A P9-1; 3.00A {Rice black 14.9 1.2E+02 0.0043 25.2 3.3 37 131-171 272-308 (368)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.2e-55 Score=389.00 Aligned_cols=262 Identities=19% Similarity=0.310 Sum_probs=237.6
Q ss_pred HHHHHHHHHhhhhhccchHhhhhhHheeCCC-----------CCCCHHHHHHHHHHhhccccccccchHhHHhhhhhhhh
Q 020995 30 CAIGGMLSAGTAHLAITPLDVVKVNMQVHPI-----------KYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGC 98 (318)
Q Consensus 30 ~~~ag~~a~~~~~~i~~Pld~ik~~~q~~~~-----------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 98 (318)
.+++|++|++++.++++|+|++|+|+|++.. .+++..+++++++++||++|||||+.+++++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999753 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhhhccHHHHHHHHHhCCC-----CCCChhhHHHHHHHhhCccc
Q 020995 99 RFGLYEYFKSLYSSVLGDCSRSSVFFLSSASAEVFANVALCPFEAIKVQVQAQPH-----FAKGLADGIPKLYASEGIFG 173 (318)
Q Consensus 99 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~-----~y~~~~~~~~~i~~~~G~~g 173 (318)
+|.+||.+++.+.+.. +..+....+++|++||+++.++++|+|++|+|+|++.. .|.+.++++++|+++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~-~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS-EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCC-cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 9999999999886542 23566778999999999999999999999999999753 68999999999999999999
Q ss_pred cccchhHHHhhHhhhhHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHhHHHHhHhHhhhcChhHHHHHhhhccC
Q 020995 174 FYRGLIPLLGRNLPFSIVMFSTFEHSVDFFYRNVLRRTKEDCSKTQQLGVTCIAGYAAGSFGSFISNPADNIVASLYNKK 253 (318)
Q Consensus 174 lyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~t~Pldvv~~r~q~~~ 253 (318)
||||+.+++++.+|+.+++|.+||.+++.+.+.. ....+....+++|++||++++++++|+|+||+|+|.+.
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 9999999999999999999999999998764321 11234567899999999999999999999999999864
Q ss_pred -------hhHHHHHHHhhchHHhhhcccchhhHhhccchhhHHHHHHHHHHHhCC
Q 020995 254 -------ADSLMLAVKKIGLISLFTRSLPIRIMLVGPVVTLQWFFYDTIKVLSGL 301 (318)
Q Consensus 254 -------~~~~~~i~~~eG~~gly~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 301 (318)
.+|+++++++||++|||| |+.++++|.+|.++++|.+||.+++.+..
T Consensus 235 ~~~y~~~~~~~~~i~~~eG~~glyr-G~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 235 LGQYHSAGHCALTMLRKEGPRAFYK-GFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp SSSCCSHHHHHHHHHHSSCTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred ccccCCHHHHHHHHHHHcChHHhhc-cHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999 99999999999999999999999988764
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2e-53 Score=376.56 Aligned_cols=263 Identities=19% Similarity=0.313 Sum_probs=228.6
Q ss_pred chhHHHHHHHHHHHhhhhhccchHhhhhhHheeCC--------CCCCCHHHHHHHHHHhhccccccccchHhHHhhhhhh
Q 020995 25 GHYSICAIGGMLSAGTAHLAITPLDVVKVNMQVHP--------IKYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQG 96 (318)
Q Consensus 25 ~~~~~~~~ag~~a~~~~~~i~~Pld~ik~~~q~~~--------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 96 (318)
..+...+++|++|++++.++++|+|++|+|+|++. ..|++..+++++++++||++|||||+.+++++.+++.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 34667899999999999999999999999999874 2578999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhcCCCC----chHHHHHHHHHHHHHHHhhhccHHHHHHHHHhCC------CCCCChhhHHHHHH
Q 020995 97 GCRFGLYEYFKSLYSSVLGDCS----RSSVFFLSSASAEVFANVALCPFEAIKVQVQAQP------HFAKGLADGIPKLY 166 (318)
Q Consensus 97 ~~~f~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~------~~y~~~~~~~~~i~ 166 (318)
+++|++||.+++.+....+... .....+++|++|++++.++++|+|++|+|+|++. .+|.++++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999995433222221 2356789999999999999999999999999973 36889999999999
Q ss_pred HhhCccccccchhHHHhhHhhhhHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHhHHHHhHhHhhhcChhHHHH
Q 020995 167 ASEGIFGFYRGLIPLLGRNLPFSIVMFSTFEHSVDFFYRNVLRRTKEDCSKTQQLGVTCIAGYAAGSFGSFISNPADNIV 246 (318)
Q Consensus 167 ~~~G~~glyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~t~Pldvv~ 246 (318)
++||++|||||+.+++++.+|+.+++|.+||.+++.+... ...+....+++|+++|++++++++|+||||
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvk 234 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 234 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCccHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 9999999999999999999999999999999998854211 112456788999999999999999999999
Q ss_pred HhhhccC------------hhHHHHHHHhhchHHhhhcccchhhHhhccchhhHHHHHHHHHHHh
Q 020995 247 ASLYNKK------------ADSLMLAVKKIGLISLFTRSLPIRIMLVGPVVTLQWFFYDTIKVLS 299 (318)
Q Consensus 247 ~r~q~~~------------~~~~~~i~~~eG~~gly~~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 299 (318)
+|+|.+. .+|+++|+++||++|||| |+.++++|. +.+++.|++||.+++.+
T Consensus 235 tr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyr-G~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 235 RRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFK-GAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGT-THHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEec-chHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999763 689999999999999999 999999995 57899999999988753
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.6e-35 Score=262.33 Aligned_cols=181 Identities=20% Similarity=0.308 Sum_probs=165.3
Q ss_pred chhHHHHHHHHHHHhhhhhccchHhhhhhHheeCCC-----CCCCHHHHHHHHHHhhccccccccchHhHHhhhhhhhhH
Q 020995 25 GHYSICAIGGMLSAGTAHLAITPLDVVKVNMQVHPI-----KYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGCR 99 (318)
Q Consensus 25 ~~~~~~~~ag~~a~~~~~~i~~Pld~ik~~~q~~~~-----~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~ 99 (318)
......+++|++|++++.++++|+|++|+|+|++.. .+++..+++++|+++||++|||||+.+++++.+++.+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 445678899999999999999999999999999753 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhhhccHHHHHHHHHhCC-CCCCChhhHHHHHHHhhCccccccch
Q 020995 100 FGLYEYFKSLYSSVLGDCSRSSVFFLSSASAEVFANVALCPFEAIKVQVQAQP-HFAKGLADGIPKLYASEGIFGFYRGL 178 (318)
Q Consensus 100 f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~-~~y~~~~~~~~~i~~~~G~~glyrG~ 178 (318)
|.+||.+++.+.+......+....+++|++|+++++++++|+|++|+|+|.+. ..|.++++++++++++||++|||||+
T Consensus 182 f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~ 261 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGF 261 (303)
T ss_dssp HHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCC
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccH
Confidence 99999999988654333456677899999999999999999999999999984 46899999999999999999999999
Q ss_pred hHHHhhHhhhhHHHHHHHHHHHHHHHH
Q 020995 179 IPLLGRNLPFSIVMFSTFEHSVDFFYR 205 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~~~y~~~~~~~~~ 205 (318)
.++++|.+|..+++|.+||.+++.+..
T Consensus 262 ~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 262 MPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877643
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.7e-34 Score=250.94 Aligned_cols=174 Identities=17% Similarity=0.304 Sum_probs=155.0
Q ss_pred hhHHHHHHHHHHHhhhhhccchHhhhhhHheeCC------CCCCCHHHHHHHHHHhhccccccccchHhHHhhhhhhhhH
Q 020995 26 HYSICAIGGMLSAGTAHLAITPLDVVKVNMQVHP------IKYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGCR 99 (318)
Q Consensus 26 ~~~~~~~ag~~a~~~~~~i~~Pld~ik~~~q~~~------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~ 99 (318)
.+...+++|++|++++.++++|+|++|+|+|++. ..|++..+++++++++||++|||||+.+++++.++..+++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999874 3578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHhhhccHHHHHHHHHhCC------CCCCChhhHHHHHHHhhCccc
Q 020995 100 FGLYEYFKSLYSSVLGDCSRSSVFFLSSASAEVFANVALCPFEAIKVQVQAQP------HFAKGLADGIPKLYASEGIFG 173 (318)
Q Consensus 100 f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~------~~y~~~~~~~~~i~~~~G~~g 173 (318)
|.+||.+++.+.+. +..+....+++|++|+++++++++|+|++|+|+|++. ..|.+.++++++++++||++|
T Consensus 191 f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~g 268 (297)
T 1okc_A 191 FGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKA 268 (297)
T ss_dssp HHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCe
Confidence 99999999977543 2345677889999999999999999999999999874 268999999999999999999
Q ss_pred cccchhHHHhhHhhhhHHHHHHHHHHHHH
Q 020995 174 FYRGLIPLLGRNLPFSIVMFSTFEHSVDF 202 (318)
Q Consensus 174 lyrG~~~~~~~~~~~~~~~~~~y~~~~~~ 202 (318)
||||+.++++|. +..++.|.+||.+++.
T Consensus 269 lyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 269 FFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp GGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred EecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 999999999996 5678999999988764
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=31.43 E-value=18 Score=23.68 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=34.6
Q ss_pred heeCCCCCCCHHHHHHHHHHhhcccc----ccccchHhHHhhhhhhhhHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 020995 55 MQVHPIKYSSIASCYTNLLKEQGASA----FWRGSAAKFFGYGAQGGCRFGLYEYFKSLYSSVLGDCSRSSVFFLSSASA 130 (318)
Q Consensus 55 ~q~~~~~~~~~~~~~~~i~~~~G~~g----ly~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a 130 (318)
||++-.++.+.-.-...++.+.|+.| .|+|+...+.+.+ .+- ...+.+...+.|.-+
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvaral-----------------nr~--g~gpalvnminglka 61 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL-----------------NRL--GGGPALVNMINGLKA 61 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH-----------------HHH--CSSHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH-----------------Hhc--CCchHHHHHHhhhhH
Confidence 57777788888888888888888744 4555554443322 111 233445555556555
Q ss_pred HHHHHhhhcc
Q 020995 131 EVFANVALCP 140 (318)
Q Consensus 131 ~~~~~~v~~P 140 (318)
--++.+-.+|
T Consensus 62 yyisafnanp 71 (100)
T 3f2e_A 62 YYISAFNANP 71 (100)
T ss_dssp HHHHHHCCCH
T ss_pred hhhHhhcCCc
Confidence 5555555555
No 6
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=20.67 E-value=24 Score=18.57 Aligned_cols=23 Identities=26% Similarity=0.078 Sum_probs=17.3
Q ss_pred hHHHHhHHHHhHhHhhhcChhHH
Q 020995 222 GVTCIAGYAAGSFGSFISNPADN 244 (318)
Q Consensus 222 ~~~~~~~~~a~~~a~~~t~Pldv 244 (318)
+.+.++..++|++-++++|-|+.
T Consensus 4 fv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHHh
Confidence 45566778888888888887763
No 7
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=18.37 E-value=72 Score=26.64 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=27.3
Q ss_pred HhHhhhcChhHHHHHhhhccC--hhHHHHHHHhhch
Q 020995 233 SFGSFISNPADNIVASLYNKK--ADSLMLAVKKIGL 266 (318)
Q Consensus 233 ~~a~~~t~Pldvv~~r~q~~~--~~~~~~i~~~eG~ 266 (318)
.++++=-||||.+|-.++... ...+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~Slistp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCCCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhccChHHHHHHHHhcCc
Confidence 467788899999988877543 6788999999984
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=17.67 E-value=90 Score=20.76 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=30.7
Q ss_pred hchHHhhhcccchhhHhhccchhhHHHHHHHHHHHhC
Q 020995 264 IGLISLFTRSLPIRIMLVGPVVTLQWFFYDTIKVLSG 300 (318)
Q Consensus 264 eG~~gly~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 300 (318)
.|+...+| -+..+++..+|..++.+.+|+...+...
T Consensus 32 ~~i~N~~R-R~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 32 DALPNVWR-RFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHH-HHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 47777888 7888899999999999999999887764
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=15.25 E-value=1e+02 Score=20.45 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=30.6
Q ss_pred hhchHHhhhcccchhhHhhccchhhHHHHHHHHHHHhC
Q 020995 263 KIGLISLFTRSLPIRIMLVGPVVTLQWFFYDTIKVLSG 300 (318)
Q Consensus 263 ~eG~~gly~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 300 (318)
+.|+...+| -+..+.+..+|..++.+.+|+...+...
T Consensus 31 ~~~i~n~~R-R~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 31 SKGIPNVLR-RTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHH-HHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 356777888 7788888899999999999999887764
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=14.92 E-value=1.2e+02 Score=25.22 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=28.2
Q ss_pred HHHHHhhhccHHHHHHHHHhCCCCCCChhhHHHHHHHhhCc
Q 020995 131 EVFANVALCPFEAIKVQVQAQPHFAKGLADGIPKLYASEGI 171 (318)
Q Consensus 131 ~~~~~~v~~P~d~ik~r~q~~~~~y~~~~~~~~~i~~~~G~ 171 (318)
-.++++-.+|||++|-.+++. -++...+++.+.++|+
T Consensus 272 yqLaTFdnypfdllRfqL~Sl----istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 272 YQLATFDNYPFDLLRFQLSSL----ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHHCTTCBHHHHHHHCSSC----CCCCHHHHHHHHHSCS
T ss_pred eeeecCCCCCHHHHHHHhhhh----ccChHHHHHHHHhcCc
Confidence 345667789999999988765 4566788888888773
Done!