Query 020996
Match_columns 318
No_of_seqs 161 out of 659
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 11:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vut_I AREA, nitrogen regulato 99.6 5.5E-16 1.9E-20 109.4 2.3 37 242-279 2-38 (43)
2 1gnf_A Transcription factor GA 99.6 1.1E-15 3.7E-20 109.3 3.9 39 240-279 3-41 (46)
3 3dfx_A Trans-acting T-cell-spe 99.5 3E-15 1E-19 113.2 3.5 44 239-286 5-48 (63)
4 4gat_A Nitrogen regulatory pro 99.5 4.3E-15 1.5E-19 113.0 2.0 39 239-278 7-45 (66)
5 2kae_A GATA-type transcription 99.4 3.2E-14 1.1E-18 109.7 2.4 44 239-285 6-49 (71)
6 4hc9_A Trans-acting T-cell-spe 99.3 1.1E-12 3.9E-17 108.0 2.4 39 240-279 58-96 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 9.7E-12 3.3E-16 102.5 2.9 38 240-278 4-41 (115)
8 1dl6_A Transcription factor II 71.1 1.4 4.9E-05 31.9 1.2 42 241-285 11-54 (58)
9 1pft_A TFIIB, PFTFIIBN; N-term 68.9 1.3 4.3E-05 30.5 0.5 42 241-285 5-48 (50)
10 2b0o_E UPLC1; arfgap, structur 48.9 6 0.00021 34.8 1.4 31 239-271 40-70 (301)
11 3lju_X ARF-GAP with dual PH do 48.6 4.1 0.00014 38.4 0.3 35 238-274 31-65 (386)
12 3k7a_M Transcription initiatio 48.2 7.7 0.00026 35.9 2.1 42 241-284 21-65 (345)
13 3cw2_K Translation initiation 47.8 7.1 0.00024 33.0 1.6 33 240-273 102-134 (139)
14 2olm_A Nucleoporin-like protei 45.1 6.3 0.00022 33.2 0.9 35 239-275 23-57 (140)
15 2iqj_A Stromal membrane-associ 44.9 6.4 0.00022 32.9 0.9 35 239-275 25-59 (134)
16 2owa_A Arfgap-like finger doma 43.3 6.5 0.00022 33.2 0.7 35 239-275 34-68 (138)
17 2d74_B Translation initiation 42.3 7.5 0.00026 33.3 0.9 31 242-273 105-135 (148)
18 2crr_A Stromal membrane-associ 42.2 8.4 0.00029 32.5 1.2 35 239-275 27-61 (141)
19 1pqv_S STP-alpha, transcriptio 40.8 7.7 0.00026 36.0 0.9 34 241-274 268-307 (309)
20 1qyp_A RNA polymerase II; tran 39.3 4.1 0.00014 28.8 -1.0 35 241-275 15-55 (57)
21 2crw_A ARF GAP 3, ADP-ribosyla 39.0 12 0.0004 32.1 1.6 35 239-275 27-61 (149)
22 2yrk_A Zinc finger homeobox pr 38.8 6.3 0.00022 29.3 -0.1 40 256-308 6-45 (55)
23 2yrc_A Protein transport prote 38.6 5.1 0.00018 29.4 -0.6 45 236-283 4-50 (59)
24 3dwd_A ADP-ribosylation factor 37.7 12 0.0004 32.3 1.4 35 239-275 36-70 (147)
25 1nee_A EIF-2-beta, probable tr 36.2 7.4 0.00025 32.9 -0.0 30 242-272 103-132 (138)
26 1k81_A EIF-2-beta, probable tr 36.2 2.8 9.5E-05 28.0 -2.1 30 243-273 2-31 (36)
27 3po3_S Transcription elongatio 34.5 11 0.00036 32.7 0.6 34 241-274 137-176 (178)
28 3jue_A Arfgap with coiled-coil 34.1 9.8 0.00034 35.2 0.4 31 238-270 42-72 (368)
29 3cng_A Nudix hydrolase; struct 34.0 11 0.00037 30.9 0.6 30 241-270 3-32 (189)
30 2p57_A GTPase-activating prote 33.6 8.2 0.00028 33.0 -0.2 35 239-275 35-69 (144)
31 2zjr_Z 50S ribosomal protein L 33.4 9.9 0.00034 28.0 0.3 24 238-270 27-50 (60)
32 3v2d_5 50S ribosomal protein L 28.1 8.1 0.00028 28.5 -1.0 27 238-274 27-53 (60)
33 1tfi_A Transcriptional elongat 27.5 9.8 0.00034 26.9 -0.6 35 240-274 8-48 (50)
34 3sub_A ADP-ribosylation factor 21.0 27 0.00092 30.5 0.7 35 239-275 20-54 (163)
35 2g2k_A EIF-5, eukaryotic trans 21.0 12 0.00042 32.7 -1.4 33 242-274 97-130 (170)
36 3o47_A ADP-ribosylation factor 20.3 23 0.00079 31.8 0.2 35 239-275 35-69 (329)
No 1
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.57 E-value=5.5e-16 Score=109.38 Aligned_cols=37 Identities=43% Similarity=0.995 Sum_probs=34.4
Q ss_pred cccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCC
Q 020996 242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLL 279 (318)
Q Consensus 242 r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrll 279 (318)
+.|.+|++++||+||+||+|. +|||||||+|++++.+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence 679999999999999999996 9999999999998764
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.57 E-value=1.1e-15 Score=109.33 Aligned_cols=39 Identities=38% Similarity=0.762 Sum_probs=35.9
Q ss_pred CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCC
Q 020996 240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLL 279 (318)
Q Consensus 240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrll 279 (318)
+...|.+|++++||+||+||+|. +|||||||||++++.+
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence 56889999999999999999996 9999999999998764
No 3
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.53 E-value=3e-15 Score=113.16 Aligned_cols=44 Identities=36% Similarity=0.859 Sum_probs=38.4
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCCCCCCCCC
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAK 286 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrllP~yrPa~ 286 (318)
.....|.||++++||+||+||+|. +|||||||+|++++. +||..
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~~ 48 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPLT 48 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCGG
T ss_pred CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCcC
Confidence 356889999999999999999996 999999999999876 45554
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.49 E-value=4.3e-15 Score=113.01 Aligned_cols=39 Identities=41% Similarity=0.912 Sum_probs=36.0
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCC
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 278 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrl 278 (318)
.....|.||++++||+||+||+|. +|||||||+|++++.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence 467999999999999999999996 999999999998765
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.43 E-value=3.2e-14 Score=109.70 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=35.0
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCCCCCCCC
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPA 285 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrllP~yrPa 285 (318)
.....|.||++++||+||+|+.+..+|||||||+|++++. +||.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~---~RP~ 49 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK---TRPV 49 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS---CCCT
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC---CCCc
Confidence 4568999999999999999554444999999999998764 4555
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.26 E-value=1.1e-12 Score=108.04 Aligned_cols=39 Identities=36% Similarity=0.858 Sum_probs=35.9
Q ss_pred CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCC
Q 020996 240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLL 279 (318)
Q Consensus 240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrll 279 (318)
....|+||++++||+||+||+| .+|||||||||++++..
T Consensus 58 ~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 58 AGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN 96 (115)
T ss_dssp TTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred ccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC
Confidence 4589999999999999999999 89999999999987663
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.16 E-value=9.7e-12 Score=102.49 Aligned_cols=38 Identities=42% Similarity=0.850 Sum_probs=33.4
Q ss_pred CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCC
Q 020996 240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 278 (318)
Q Consensus 240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrl 278 (318)
..+.|.||+++.||+||+|++| .+|||||||+|+.++.
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQ 41 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhccc
Confidence 4689999999999999999999 7999999999987554
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=71.12 E-value=1.4 Score=31.91 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=29.6
Q ss_pred CcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCC--CCCCCCC
Q 020996 241 GRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL--LPEYRPA 285 (318)
Q Consensus 241 ~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrl--lP~yrPa 285 (318)
...|..|+... .-.....| .+.|..||+-|..+.+ -|+||-.
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~F 54 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRTF 54 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCCS
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCccccc
Confidence 45799998755 33344445 7999999999987654 3777754
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=68.87 E-value=1.3 Score=30.55 Aligned_cols=42 Identities=24% Similarity=0.489 Sum_probs=27.9
Q ss_pred CcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCC--CCCCCC
Q 020996 241 GRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLL--PEYRPA 285 (318)
Q Consensus 241 ~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrll--P~yrPa 285 (318)
...|-+|+.. ++-.....| ...|..||+-|....+- |+||.-
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~f 48 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRAF 48 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSCC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCccccc
Confidence 4579999873 232222235 79999999999876554 667643
No 10
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=48.92 E-value=6 Score=34.80 Aligned_cols=31 Identities=26% Similarity=0.670 Sum_probs=26.6
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGV 271 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGL 271 (318)
+....|..|+... |.|-.-..| ..+|-.|--
T Consensus 40 ~~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~ 70 (301)
T 2b0o_E 40 PGNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSG 70 (301)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHH
T ss_pred CCCCcCCCCCCCC-CCeEEeecC-eEEcHHHHH
Confidence 5678999999965 999999999 899999944
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=48.58 E-value=4.1 Score=38.44 Aligned_cols=35 Identities=26% Similarity=0.675 Sum_probs=28.2
Q ss_pred cCCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhh
Q 020996 238 QQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYK 274 (318)
Q Consensus 238 ~~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLryk 274 (318)
.+....|++|+.. -|.|-.=..| -.||-.|.---+
T Consensus 31 ~~~N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr 65 (386)
T 3lju_X 31 RPGNARCADCGAP-DPDWASYTLG-VFICLSCSGIHR 65 (386)
T ss_dssp SGGGSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHH
T ss_pred CcCCCcCccCCCC-CCCeEEeccc-EEEhhhhchHhh
Confidence 3456889999996 7999888888 899999975443
No 12
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=48.25 E-value=7.7 Score=35.91 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=27.6
Q ss_pred CcccCCCCCCCC-CCcCCCCCCChhhhhhhhhhhhhCCCC--CCCCC
Q 020996 241 GRRCSHCLSQRT-PQWRAGPLGPKTLCNACGVRYKSGRLL--PEYRP 284 (318)
Q Consensus 241 ~r~Cs~Cgtt~T-P~WRrGP~G~ktLCNACGLrykkgrll--P~yrP 284 (318)
...|.+|+...+ -.. +--.| .++|..||+-+.-+-+- ||||-
T Consensus 21 ~~~Cp~Cg~~~~~iv~-D~~~G-~~vC~~CG~Vl~e~~id~~~EwR~ 65 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVE-RFSEG-DVVCALCGLVLSDKLVDTRSEWRT 65 (345)
T ss_dssp CCCCSTTCCSCCCCCC-CSSSC-SCCCSSSCCCCCCCCCCTTCCCCC
T ss_pred CCcCcCCCCCCCceEE-ECCCC-CEecCCCCeEcccccccCCccccc
Confidence 457999998642 233 33356 78999999987655443 66654
No 13
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=47.77 E-value=7.1 Score=33.02 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=21.7
Q ss_pred CCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhh
Q 020996 240 QGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRY 273 (318)
Q Consensus 240 ~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLry 273 (318)
.--.|..|+..+|-.=+++-. --.-|+|||-.-
T Consensus 102 ~yVlC~~C~sPdT~l~k~~r~-~~l~C~ACGa~~ 134 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKKEKKS-WYIVCLACGAQT 134 (139)
T ss_dssp CCSSCCSSSSSCCCSCSSCST-TTSSCCC-----
T ss_pred HeeECCCCCCcCcEEEEeCCe-EEEEecCCCCCC
Confidence 346799999999999886522 246899999653
No 14
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=45.05 E-value=6.3 Score=33.18 Aligned_cols=35 Identities=20% Similarity=0.617 Sum_probs=28.6
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKS 275 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykk 275 (318)
+....|++|+.. -|.|=.=..| -.+|-.|.-..+.
T Consensus 23 p~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 23 PHNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred cCCCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 457899999985 6999888889 8899999765554
No 15
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=44.89 E-value=6.4 Score=32.90 Aligned_cols=35 Identities=23% Similarity=0.677 Sum_probs=28.7
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKS 275 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykk 275 (318)
+....|++|+... |.|=.=..| -.+|-.|.-..+.
T Consensus 25 p~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~ 59 (134)
T 2iqj_A 25 EDNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRN 59 (134)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred cCCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhc
Confidence 4678999999875 999888889 8899999765554
No 16
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=43.26 E-value=6.5 Score=33.16 Aligned_cols=35 Identities=23% Similarity=0.626 Sum_probs=29.1
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKS 275 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykk 275 (318)
+....|++|+... |.|-.=..| -.+|-.|.-..+.
T Consensus 34 p~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 68 (138)
T 2owa_A 34 PENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRK 68 (138)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHT
T ss_pred cCCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhC
Confidence 4568999999865 999988889 8899999776665
No 17
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=42.27 E-value=7.5 Score=33.28 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=24.0
Q ss_pred cccCCCCCCCCCCcCCCCCCChhhhhhhhhhh
Q 020996 242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVRY 273 (318)
Q Consensus 242 r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLry 273 (318)
-.|..|+..+|-+=+++- ---.-|+|||-..
T Consensus 105 VlC~~C~sPdT~L~k~~r-~~~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDR-FHFLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSS-SBCCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCC-EEEEEecCCCCCc
Confidence 579999999999888652 2246899999654
No 18
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.20 E-value=8.4 Score=32.46 Aligned_cols=35 Identities=20% Similarity=0.668 Sum_probs=28.3
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKS 275 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykk 275 (318)
+....|++|+.. -|.|=.=..| -.+|-.|.-..+.
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (141)
T 2crr_A 27 EDNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRN 61 (141)
T ss_dssp GGGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHH
T ss_pred ccCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhc
Confidence 456899999986 5999888888 8899999665554
No 19
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=40.80 E-value=7.7 Score=35.97 Aligned_cols=34 Identities=26% Similarity=0.634 Sum_probs=25.3
Q ss_pred CcccCCCCCCCCCCc----CCCCCCCh--hhhhhhhhhhh
Q 020996 241 GRRCSHCLSQRTPQW----RAGPLGPK--TLCNACGVRYK 274 (318)
Q Consensus 241 ~r~Cs~Cgtt~TP~W----RrGP~G~k--tLCNACGLryk 274 (318)
...|..||-...-.| |...+|-. +.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 458999998776555 66666632 48999999886
No 20
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=39.27 E-value=4.1 Score=28.75 Aligned_cols=35 Identities=29% Similarity=0.539 Sum_probs=25.5
Q ss_pred CcccCCCCCCCC----CCcCCCCCCCh--hhhhhhhhhhhh
Q 020996 241 GRRCSHCLSQRT----PQWRAGPLGPK--TLCNACGVRYKS 275 (318)
Q Consensus 241 ~r~Cs~Cgtt~T----P~WRrGP~G~k--tLCNACGLrykk 275 (318)
...|.+||-... -+||...++.. +.|..||-+|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 467999998543 47888766622 589999988764
No 21
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.97 E-value=12 Score=32.05 Aligned_cols=35 Identities=26% Similarity=0.615 Sum_probs=29.0
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKS 275 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykk 275 (318)
+..+.|++|+.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 61 (149)
T 2crw_A 27 PTNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRS 61 (149)
T ss_dssp TTTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHH
T ss_pred cCCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhcc
Confidence 567999999975 6999888889 8899999766554
No 22
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=38.77 E-value=6.3 Score=29.32 Aligned_cols=40 Identities=28% Similarity=0.498 Sum_probs=27.9
Q ss_pred CCCCCCChhhhhhhhhhhhhCCCCCCCCCCCCCCcccccccccchHHHHHHHh
Q 020996 256 RAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMA 308 (318)
Q Consensus 256 RrGP~G~ktLCNACGLrykkgrllP~yrPa~sP~f~~~~HSnshkkV~~~r~~ 308 (318)
..||+|+++-|.-||+.|-.+ ..-+-|--+...+.+.|..
T Consensus 6 ~~~~~~P~~eC~lC~vkYs~r-------------~slqDHIFs~qHI~~vk~~ 45 (55)
T 2yrk_A 6 SGGTDGTKPECTLCGVKYSAR-------------LSIRDHIFSKQHISKVRET 45 (55)
T ss_dssp CCCCCCCCSCCTTTTCCCCSS-------------SCHHHHHTSHHHHHHHHHT
T ss_pred CCCCCCCCccccccCcccccc-------------cchhhhhccHHHHHHHHHH
Confidence 358899999999999998743 2334566666666666643
No 23
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=38.61 E-value=5.1 Score=29.37 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=35.2
Q ss_pred cccCCCcccCC--CCCCCCCCcCCCCCCChhhhhhhhhhhhhCCCCCCCC
Q 020996 236 QQQQQGRRCSH--CLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYR 283 (318)
Q Consensus 236 ~~~~~~r~Cs~--Cgtt~TP~WRrGP~G~ktLCNACGLrykkgrllP~yr 283 (318)
+......+|.. |++-.-|.++-...|....||-|+.+.. +.++|.
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~---~P~~Y~ 50 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQ---FPPSYA 50 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEE---CCSCCS
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCC---CCHHHh
Confidence 33456789998 9999999999888888899999997643 444554
No 24
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=37.72 E-value=12 Score=32.27 Aligned_cols=35 Identities=26% Similarity=0.602 Sum_probs=29.0
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKS 275 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykk 275 (318)
+..+.|++|+... |.|-.=..| -.||-.|.-.-+.
T Consensus 36 p~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~ 70 (147)
T 3dwd_A 36 DENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRG 70 (147)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred cCCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhc
Confidence 5678999999875 999888888 8999999765554
No 25
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=36.18 E-value=7.4 Score=32.88 Aligned_cols=30 Identities=30% Similarity=0.632 Sum_probs=23.3
Q ss_pred cccCCCCCCCCCCcCCCCCCChhhhhhhhhh
Q 020996 242 RRCSHCLSQRTPQWRAGPLGPKTLCNACGVR 272 (318)
Q Consensus 242 r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLr 272 (318)
-.|..|+..+|-.=+++-. --.-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~-~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRI-SLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTT-TEEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCe-EEEEccCCCCC
Confidence 4799999999998886522 24689999954
No 26
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=36.17 E-value=2.8 Score=28.01 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=21.4
Q ss_pred ccCCCCCCCCCCcCCCCCCChhhhhhhhhhh
Q 020996 243 RCSHCLSQRTPQWRAGPLGPKTLCNACGVRY 273 (318)
Q Consensus 243 ~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLry 273 (318)
.|..|+..+|-+=+++.. --.-|+|||-..
T Consensus 2 lC~~C~~peT~l~~~~~~-~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRV-HLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTE-EEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCc-EEEEhhcCCCcc
Confidence 489999999988775411 124599999654
No 27
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=34.55 E-value=11 Score=32.72 Aligned_cols=34 Identities=26% Similarity=0.659 Sum_probs=23.7
Q ss_pred CcccCCCCCCCCCCc----CCCCCCCh--hhhhhhhhhhh
Q 020996 241 GRRCSHCLSQRTPQW----RAGPLGPK--TLCNACGVRYK 274 (318)
Q Consensus 241 ~r~Cs~Cgtt~TP~W----RrGP~G~k--tLCNACGLryk 274 (318)
...|..||-...--| |.+.+|-. ..|..||-+|+
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 468999998664333 55555522 47999999886
No 28
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=34.15 E-value=9.8 Score=35.15 Aligned_cols=31 Identities=32% Similarity=0.817 Sum_probs=26.6
Q ss_pred cCCCcccCCCCCCCCCCcCCCCCCChhhhhhhh
Q 020996 238 QQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACG 270 (318)
Q Consensus 238 ~~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACG 270 (318)
.+....|.+|+.. -|.|=.=..| -.+|-.|.
T Consensus 42 ~~~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~ 72 (368)
T 3jue_A 42 VDGNAQCCDCREP-APEWASINLG-VTLCIQCS 72 (368)
T ss_dssp STTTTBCTTTCCB-SCCEEETTTT-EEECHHHH
T ss_pred CCCcCcCCCCCCC-CCCeEEecCC-eEEcHhHH
Confidence 4567999999985 6999888888 89999995
No 29
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=33.98 E-value=11 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=25.8
Q ss_pred CcccCCCCCCCCCCcCCCCCCChhhhhhhh
Q 020996 241 GRRCSHCLSQRTPQWRAGPLGPKTLCNACG 270 (318)
Q Consensus 241 ~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACG 270 (318)
.+.|..||...+.....|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 478999999998877778777778999999
No 30
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=33.62 E-value=8.2 Score=33.00 Aligned_cols=35 Identities=26% Similarity=0.611 Sum_probs=28.7
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKS 275 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykk 275 (318)
+..+.|.+|+.. -|.|=.=..| -.+|-.|.-.-+.
T Consensus 35 p~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~ 69 (144)
T 2p57_A 35 PTNKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRS 69 (144)
T ss_dssp GGGGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCCCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcC
Confidence 466899999986 4999888888 7899999776665
No 31
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=33.38 E-value=9.9 Score=28.01 Aligned_cols=24 Identities=21% Similarity=0.750 Sum_probs=18.9
Q ss_pred cCCCcccCCCCCCCCCCcCCCCCCChhhhhhhh
Q 020996 238 QQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACG 270 (318)
Q Consensus 238 ~~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACG 270 (318)
.+....|.+||...-| ..+|-.||
T Consensus 27 ~p~l~~c~~cG~~~~p---------H~vc~~CG 50 (60)
T 2zjr_Z 27 APNLTECPQCHGKKLS---------HHICPNCG 50 (60)
T ss_dssp CCCCEECTTTCCEECT---------TBCCTTTC
T ss_pred CCCceECCCCCCEeCC---------ceEcCCCC
Confidence 3567889999987543 67999999
No 32
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=28.05 E-value=8.1 Score=28.53 Aligned_cols=27 Identities=30% Similarity=0.786 Sum_probs=20.0
Q ss_pred cCCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhh
Q 020996 238 QQQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYK 274 (318)
Q Consensus 238 ~~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLryk 274 (318)
.+..-.|.+||...-| ..+|-.|| +|+
T Consensus 27 ~p~l~~c~~cGe~~~~---------H~vc~~CG-~Y~ 53 (60)
T 3v2d_5 27 PPTLVPCPECKAMKPP---------HTVCPECG-YYA 53 (60)
T ss_dssp CCCCEECTTTCCEECT---------TSCCTTTC-EET
T ss_pred CCceeECCCCCCeecc---------eEEcCCCC-cCC
Confidence 3567889999986543 56899999 443
No 33
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=27.46 E-value=9.8 Score=26.90 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=25.1
Q ss_pred CCcccCCCCCCCCCCc----CCCCCCCh--hhhhhhhhhhh
Q 020996 240 QGRRCSHCLSQRTPQW----RAGPLGPK--TLCNACGVRYK 274 (318)
Q Consensus 240 ~~r~Cs~Cgtt~TP~W----RrGP~G~k--tLCNACGLryk 274 (318)
....|..|+-.+.--| |+.++|-. ..|..||-+|+
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 4567999998776444 77766632 38999998875
No 34
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=21.05 E-value=27 Score=30.55 Aligned_cols=35 Identities=26% Similarity=0.573 Sum_probs=27.9
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKS 275 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykk 275 (318)
+....|++|+.. -|.|-.=..| -.||-.|.-.-+.
T Consensus 20 p~N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~ 54 (163)
T 3sub_A 20 ESNNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRS 54 (163)
T ss_dssp GGGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcC
Confidence 356889999986 6999888888 8999999654443
No 35
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=21.02 E-value=12 Score=32.71 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=23.8
Q ss_pred cccCCCCCCCCCCcCCCCCC-Chhhhhhhhhhhh
Q 020996 242 RRCSHCLSQRTPQWRAGPLG-PKTLCNACGVRYK 274 (318)
Q Consensus 242 r~Cs~Cgtt~TP~WRrGP~G-~ktLCNACGLryk 274 (318)
-.|..|+..+|-+=+..-.+ --.-|+|||-..-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 46999999999888832122 2357999997654
No 36
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=20.33 E-value=23 Score=31.84 Aligned_cols=35 Identities=26% Similarity=0.604 Sum_probs=27.9
Q ss_pred CCCcccCCCCCCCCCCcCCCCCCChhhhhhhhhhhhh
Q 020996 239 QQGRRCSHCLSQRTPQWRAGPLGPKTLCNACGVRYKS 275 (318)
Q Consensus 239 ~~~r~Cs~Cgtt~TP~WRrGP~G~ktLCNACGLrykk 275 (318)
+....|++|+.. -|.|-.=..| -.+|-.|.---+.
T Consensus 35 ~~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~ 69 (329)
T 3o47_A 35 DENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRG 69 (329)
T ss_dssp TTTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhcc
Confidence 457899999985 5799887788 8899999765554
Done!