Query 020997
Match_columns 318
No_of_seqs 187 out of 1360
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 11:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 2E-34 6.9E-39 233.6 8.7 105 11-117 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.8E-34 1.7E-38 233.0 7.8 103 14-118 1-103 (107)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 7.6E-34 2.6E-38 238.1 7.7 113 3-117 16-128 (128)
4 3osg_A MYB21; transcription-DN 100.0 1.3E-33 4.5E-38 236.7 8.9 106 8-116 5-110 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 2.7E-33 9.2E-38 236.1 9.7 104 14-119 2-105 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.3E-31 4.3E-36 232.0 6.4 109 7-117 51-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.8E-30 1.6E-34 222.1 5.9 105 11-117 3-108 (159)
8 2dim_A Cell division cycle 5-l 99.8 3.9E-22 1.3E-26 151.2 1.2 67 8-76 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 6.6E-21 2.3E-25 159.4 6.0 76 41-117 1-77 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 5.4E-19 1.8E-23 162.6 6.2 107 9-116 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 7.6E-19 2.6E-23 135.2 4.6 60 54-114 9-68 (73)
12 2din_A Cell division cycle 5-l 99.7 3.7E-17 1.3E-21 122.4 6.9 58 61-119 2-59 (66)
13 2cu7_A KIAA1915 protein; nucle 99.7 5E-17 1.7E-21 123.8 7.7 57 62-118 3-59 (72)
14 2juh_A Telomere binding protei 99.7 1.2E-17 4.1E-22 139.9 2.6 86 6-92 9-103 (121)
15 2d9a_A B-MYB, MYB-related prot 99.7 1.5E-17 5.2E-22 122.2 2.2 57 9-67 3-59 (60)
16 2d9a_A B-MYB, MYB-related prot 99.7 8.5E-17 2.9E-21 118.2 5.9 56 63-118 3-59 (60)
17 1gvd_A MYB proto-oncogene prot 99.6 3E-17 1E-21 117.3 2.0 52 12-65 1-52 (52)
18 1ity_A TRF1; helix-turn-helix, 99.6 4.2E-17 1.5E-21 123.2 1.6 64 8-72 4-68 (69)
19 2roh_A RTBP1, telomere binding 99.6 8.7E-17 3E-21 134.9 3.5 80 9-89 26-114 (122)
20 1guu_A C-MYB, MYB proto-oncoge 99.6 4.4E-16 1.5E-20 111.1 6.3 50 66-115 1-51 (52)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 5.2E-17 1.8E-21 116.0 1.0 52 12-65 1-52 (52)
22 1gvd_A MYB proto-oncogene prot 99.6 8.9E-16 3.1E-20 109.6 6.0 50 66-115 1-51 (52)
23 1ity_A TRF1; helix-turn-helix, 99.6 1.7E-15 5.7E-20 114.4 7.5 59 61-119 3-64 (69)
24 1w0t_A Telomeric repeat bindin 99.6 1.6E-15 5.4E-20 109.0 6.6 50 67-116 1-53 (53)
25 1x41_A Transcriptional adaptor 99.6 1.6E-15 5.4E-20 111.8 5.7 53 63-115 3-56 (60)
26 2dim_A Cell division cycle 5-l 99.6 1.7E-15 5.9E-20 114.5 5.9 56 63-118 4-60 (70)
27 3sjm_A Telomeric repeat-bindin 99.6 2.9E-16 1E-20 117.6 0.7 56 11-67 8-64 (64)
28 2yum_A ZZZ3 protein, zinc fing 99.6 4.8E-15 1.6E-19 113.4 6.4 56 63-118 3-64 (75)
29 1x41_A Transcriptional adaptor 99.6 6.1E-16 2.1E-20 114.0 1.3 56 9-66 3-58 (60)
30 3sjm_A Telomeric repeat-bindin 99.5 6.9E-15 2.4E-19 110.2 6.8 52 66-117 9-63 (64)
31 2din_A Cell division cycle 5-l 99.5 1.9E-16 6.6E-21 118.5 -1.8 60 7-70 2-61 (66)
32 2elk_A SPCC24B10.08C protein; 99.5 1.9E-14 6.6E-19 105.4 6.6 51 63-113 4-56 (58)
33 2ltp_A Nuclear receptor corepr 99.3 1.4E-15 4.6E-20 120.7 0.0 58 60-117 8-65 (89)
34 2yum_A ZZZ3 protein, zinc fing 99.5 1.4E-15 4.6E-20 116.4 -0.6 62 8-70 2-67 (75)
35 1w0t_A Telomeric repeat bindin 99.5 3.3E-15 1.1E-19 107.3 0.7 50 13-63 1-51 (53)
36 2elk_A SPCC24B10.08C protein; 99.5 5.1E-15 1.8E-19 108.5 1.3 52 10-62 5-56 (58)
37 2cu7_A KIAA1915 protein; nucle 99.4 7E-15 2.4E-19 111.9 -0.1 59 7-68 2-60 (72)
38 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.3E-13 7.9E-18 104.6 6.2 52 64-115 14-69 (73)
39 2llk_A Cyclin-D-binding MYB-li 99.4 6.1E-14 2.1E-18 107.8 1.7 61 2-67 11-71 (73)
40 1x58_A Hypothetical protein 49 99.4 6.2E-13 2.1E-17 99.1 6.3 51 66-116 6-59 (62)
41 3zqc_A MYB3; transcription-DNA 99.4 1.5E-13 5.1E-18 115.3 2.0 84 7-97 47-130 (131)
42 3osg_A MYB21; transcription-DN 99.3 1.1E-12 3.7E-17 109.5 6.8 55 63-117 6-60 (126)
43 2aje_A Telomere repeat-binding 99.3 2.4E-13 8.2E-18 111.3 2.5 81 6-87 5-94 (105)
44 2yus_A SWI/SNF-related matrix- 99.3 6.4E-13 2.2E-17 103.4 4.8 48 65-112 15-62 (79)
45 1gv2_A C-MYB, MYB proto-oncoge 99.3 1.2E-12 4E-17 105.5 5.7 52 65-116 1-53 (105)
46 2ckx_A NGTRF1, telomere bindin 99.3 2E-12 7E-17 101.6 6.9 49 69-117 1-54 (83)
47 2yus_A SWI/SNF-related matrix- 99.3 4.2E-13 1.4E-17 104.4 1.9 54 5-61 9-62 (79)
48 2aje_A Telomere repeat-binding 99.3 3.9E-12 1.3E-16 104.1 7.2 54 63-116 8-66 (105)
49 2juh_A Telomere binding protei 99.3 2.9E-12 9.8E-17 107.3 6.4 55 62-116 11-70 (121)
50 2ckx_A NGTRF1, telomere bindin 99.3 1E-12 3.4E-17 103.3 3.1 69 15-85 1-79 (83)
51 1ign_A Protein (RAP1); RAP1,ye 99.3 1.9E-12 6.3E-17 119.3 5.1 55 64-118 4-64 (246)
52 2ltp_A Nuclear receptor corepr 98.9 3.8E-13 1.3E-17 106.6 0.0 56 6-64 8-63 (89)
53 2k9n_A MYB24; R2R3 domain, DNA 99.2 5.7E-12 2E-16 102.2 5.5 50 68-117 1-51 (107)
54 2cjj_A Radialis; plant develop 99.2 1.5E-11 5.2E-16 98.5 6.9 50 67-116 7-60 (93)
55 2roh_A RTBP1, telomere binding 99.2 1.7E-11 5.8E-16 102.7 7.1 54 63-116 26-84 (122)
56 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2E-12 6.7E-17 99.4 1.0 58 5-63 9-68 (73)
57 3hm5_A DNA methyltransferase 1 99.0 5.7E-10 2E-14 89.4 6.2 65 51-119 17-86 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 8.8E-10 3E-14 81.3 6.7 47 67-113 11-57 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.8 4.6E-09 1.6E-13 80.3 6.3 51 65-116 5-59 (72)
60 2cjj_A Radialis; plant develop 98.8 3.1E-10 1E-14 90.9 -0.5 49 13-62 7-57 (93)
61 2iw5_B Protein corest, REST co 98.7 1.3E-08 4.5E-13 93.1 6.4 49 67-115 132-180 (235)
62 1x58_A Hypothetical protein 49 98.6 6.9E-09 2.4E-13 77.3 0.9 50 11-63 5-57 (62)
63 2eqr_A N-COR1, N-COR, nuclear 98.6 1.5E-08 5E-13 74.7 1.9 52 7-61 5-56 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.5 7.9E-08 2.7E-12 73.8 5.3 49 68-116 8-60 (73)
65 2xag_B REST corepressor 1; ami 98.4 2E-07 6.7E-12 93.6 5.2 46 69-114 381-426 (482)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.9E-08 1.3E-12 75.2 -0.2 52 10-63 4-57 (72)
67 1ug2_A 2610100B20RIK gene prod 98.3 9.3E-07 3.2E-11 70.3 5.6 48 69-116 34-84 (95)
68 1fex_A TRF2-interacting telome 98.2 1.5E-07 5.2E-12 69.2 0.0 48 14-63 2-58 (59)
69 1fex_A TRF2-interacting telome 98.2 1.5E-06 5.3E-11 63.8 5.4 47 68-114 2-58 (59)
70 2iw5_B Protein corest, REST co 98.2 3.3E-07 1.1E-11 83.9 1.3 54 7-63 126-179 (235)
71 2yqk_A Arginine-glutamic acid 98.1 5.6E-06 1.9E-10 61.3 6.7 48 63-110 4-52 (63)
72 2lr8_A CAsp8-associated protei 97.4 3.7E-07 1.3E-11 69.0 0.0 45 70-115 16-63 (70)
73 1wgx_A KIAA1903 protein; MYB D 98.0 6.1E-07 2.1E-11 68.8 0.1 50 14-64 8-59 (73)
74 4iej_A DNA methyltransferase 1 98.0 1.1E-05 3.8E-10 64.5 6.4 61 56-120 22-87 (93)
75 4eef_G F-HB80.4, designed hema 97.9 2E-06 6.7E-11 66.0 0.7 43 68-110 20-66 (74)
76 1ofc_X ISWI protein; nuclear p 97.9 2.3E-05 7.9E-10 74.6 7.7 100 15-116 111-276 (304)
77 4a69_C Nuclear receptor corepr 97.6 8.5E-05 2.9E-09 59.2 6.1 44 68-111 43-86 (94)
78 4eef_G F-HB80.4, designed hema 97.6 8.8E-06 3E-10 62.4 -0.3 45 14-59 20-66 (74)
79 2crg_A Metastasis associated p 97.6 0.00015 5.2E-09 54.7 6.5 43 68-110 8-51 (70)
80 2yqk_A Arginine-glutamic acid 97.4 4.7E-05 1.6E-09 56.3 1.7 49 8-59 3-52 (63)
81 2xag_B REST corepressor 1; ami 97.2 7.1E-05 2.4E-09 75.1 1.2 51 8-61 374-424 (482)
82 2ebi_A DNA binding protein GT- 97.2 0.00026 9E-09 54.7 4.0 49 68-116 4-66 (86)
83 3hm5_A DNA methyltransferase 1 97.1 8.6E-05 2.9E-09 59.3 0.3 48 13-62 29-80 (93)
84 2lr8_A CAsp8-associated protei 95.9 0.00015 5.1E-09 54.8 0.0 47 15-63 15-62 (70)
85 2y9y_A Imitation switch protei 96.6 0.0035 1.2E-07 61.1 7.4 103 15-118 124-294 (374)
86 1ug2_A 2610100B20RIK gene prod 96.5 0.00043 1.5E-08 55.1 0.3 45 15-60 34-79 (95)
87 4a69_C Nuclear receptor corepr 96.3 0.00077 2.6E-08 53.6 0.7 43 14-59 43-85 (94)
88 2crg_A Metastasis associated p 96.3 0.00082 2.8E-08 50.6 0.8 44 13-59 7-51 (70)
89 2ebi_A DNA binding protein GT- 95.5 0.00081 2.8E-08 52.0 -2.6 50 13-62 3-63 (86)
90 1irz_A ARR10-B; helix-turn-hel 93.9 0.2 6.7E-06 37.3 6.9 46 67-112 6-56 (64)
91 4iej_A DNA methyltransferase 1 93.5 0.016 5.4E-07 46.2 0.4 48 12-61 28-79 (93)
92 4b4c_A Chromodomain-helicase-D 92.8 0.088 3E-06 46.3 4.2 41 4-45 124-164 (211)
93 1ofc_X ISWI protein; nuclear p 92.0 0.26 8.8E-06 46.8 6.6 47 68-114 110-157 (304)
94 4b4c_A Chromodomain-helicase-D 91.9 0.21 7.1E-06 43.9 5.5 49 67-115 6-59 (211)
95 1irz_A ARR10-B; helix-turn-hel 86.7 0.21 7E-06 37.1 1.1 48 11-58 4-53 (64)
96 2xb0_X Chromo domain-containin 82.2 1.1 3.7E-05 41.8 4.1 31 15-46 169-199 (270)
97 2xb0_X Chromo domain-containin 79.3 4.1 0.00014 37.9 7.0 48 68-115 3-55 (270)
98 2o8x_A Probable RNA polymerase 68.4 7.2 0.00024 27.0 4.5 43 71-115 16-58 (70)
99 1ku3_A Sigma factor SIGA; heli 67.9 7.3 0.00025 27.8 4.6 44 71-116 11-58 (73)
100 1u78_A TC3 transposase, transp 64.2 22 0.00075 27.7 7.2 89 15-110 5-101 (141)
101 2p7v_B Sigma-70, RNA polymeras 63.6 7.7 0.00026 27.3 3.9 41 75-116 9-53 (68)
102 2rq5_A Protein jumonji; develo 55.7 65 0.0022 26.1 8.7 79 10-115 3-96 (121)
103 2li6_A SWI/SNF chromatin-remod 55.4 9.8 0.00034 30.5 3.6 38 78-115 53-98 (116)
104 3hug_A RNA polymerase sigma fa 53.7 17 0.00058 27.0 4.5 41 74-115 40-80 (92)
105 3i4p_A Transcriptional regulat 53.0 11 0.00039 31.2 3.7 44 74-118 3-47 (162)
106 2lm1_A Lysine-specific demethy 52.9 24 0.00083 27.5 5.5 38 78-115 48-97 (107)
107 3cz6_A DNA-binding protein RAP 50.6 9.8 0.00034 33.1 3.0 25 10-34 110-142 (168)
108 2jrz_A Histone demethylase jar 50.4 22 0.00075 28.5 4.9 38 78-115 44-93 (117)
109 1x3u_A Transcriptional regulat 48.4 37 0.0013 23.9 5.5 43 71-116 17-59 (79)
110 3ulq_B Transcriptional regulat 48.0 36 0.0012 25.7 5.6 47 67-116 26-72 (90)
111 1kkx_A Transcription regulator 47.7 16 0.00056 29.7 3.8 38 79-116 53-98 (123)
112 2eqy_A RBP2 like, jumonji, at 46.7 29 0.00099 28.0 5.1 38 78-115 46-95 (122)
113 2cxy_A BAF250B subunit, HBAF25 46.2 30 0.001 28.0 5.1 38 78-115 55-104 (125)
114 2yqf_A Ankyrin-1; death domain 44.2 48 0.0017 25.9 6.0 37 70-107 12-48 (111)
115 1tty_A Sigma-A, RNA polymerase 43.6 31 0.0011 25.4 4.6 40 75-115 22-65 (87)
116 1or7_A Sigma-24, RNA polymeras 43.3 35 0.0012 27.8 5.3 30 85-115 154-183 (194)
117 2dbb_A Putative HTH-type trans 42.5 38 0.0013 27.1 5.3 44 74-118 9-53 (151)
118 2y9y_A Imitation switch protei 42.2 44 0.0015 32.4 6.4 43 68-110 123-167 (374)
119 1fse_A GERE; helix-turn-helix 42.0 40 0.0014 23.2 4.8 45 69-116 10-54 (74)
120 1je8_A Nitrate/nitrite respons 42.0 38 0.0013 24.7 4.8 44 70-116 21-64 (82)
121 3c57_A Two component transcrip 42.0 42 0.0014 25.2 5.2 44 70-116 27-70 (95)
122 2jpc_A SSRB; DNA binding prote 41.9 50 0.0017 22.1 5.1 39 76-116 3-41 (61)
123 2k27_A Paired box protein PAX- 40.2 1.1E+02 0.0037 24.6 7.8 77 15-97 24-111 (159)
124 1c20_A DEAD ringer protein; DN 38.1 48 0.0016 26.8 5.2 38 78-115 56-106 (128)
125 1xsv_A Hypothetical UPF0122 pr 37.8 52 0.0018 25.7 5.3 39 75-114 29-67 (113)
126 2e1c_A Putative HTH-type trans 37.5 36 0.0012 28.5 4.5 45 73-118 26-71 (171)
127 2cyy_A Putative HTH-type trans 35.4 46 0.0016 26.8 4.7 44 74-118 7-51 (151)
128 2jxj_A Histone demethylase jar 35.3 21 0.00071 27.3 2.4 37 78-114 40-88 (96)
129 2kk0_A AT-rich interactive dom 34.9 49 0.0017 27.5 4.9 38 78-115 68-118 (145)
130 2q1z_A RPOE, ECF SIGE; ECF sig 34.5 23 0.00079 28.7 2.8 29 86-115 150-178 (184)
131 2of5_H Leucine-rich repeat and 34.2 39 0.0013 26.9 4.0 31 76-107 13-43 (118)
132 2rnj_A Response regulator prot 34.1 48 0.0016 24.4 4.3 44 70-116 29-72 (91)
133 1tc3_C Protein (TC3 transposas 33.8 81 0.0028 19.2 5.4 38 70-109 5-42 (51)
134 3cz6_A DNA-binding protein RAP 33.6 29 0.00099 30.1 3.2 35 53-87 98-141 (168)
135 2o71_A Death domain-containing 33.2 47 0.0016 26.6 4.3 34 69-106 20-53 (115)
136 3mzy_A RNA polymerase sigma-H 33.1 49 0.0017 25.8 4.5 29 86-115 123-151 (164)
137 1rp3_A RNA polymerase sigma fa 33.1 59 0.002 27.1 5.2 38 77-115 193-230 (239)
138 2of5_A Death domain-containing 31.9 45 0.0015 26.7 4.0 40 63-106 14-53 (114)
139 1k78_A Paired box protein PAX5 31.7 76 0.0026 25.1 5.4 100 12-116 28-146 (149)
140 1p4w_A RCSB; solution structur 30.2 97 0.0033 23.7 5.6 46 68-116 32-77 (99)
141 3e7l_A Transcriptional regulat 29.6 74 0.0025 22.1 4.4 34 73-107 18-51 (63)
142 2li6_A SWI/SNF chromatin-remod 29.5 8 0.00028 31.0 -0.9 40 24-64 53-98 (116)
143 1wxp_A THO complex subunit 1; 29.1 60 0.0021 25.4 4.3 30 77-107 19-48 (110)
144 1ig6_A MRF-2, modulator recogn 28.4 29 0.00098 27.2 2.2 38 78-115 37-87 (107)
145 1ntc_A Protein (nitrogen regul 27.8 95 0.0033 23.2 5.1 35 73-108 50-84 (91)
146 1s7o_A Hypothetical UPF0122 pr 27.7 86 0.0029 24.6 5.0 42 71-114 23-64 (113)
147 3k6g_A Telomeric repeat-bindin 27.3 26 0.00088 28.3 1.7 63 22-88 14-86 (111)
148 2p5v_A Transcriptional regulat 26.4 71 0.0024 25.9 4.4 44 74-118 10-54 (162)
149 2cg4_A Regulatory protein ASNC 26.3 77 0.0026 25.3 4.6 44 74-118 8-52 (152)
150 2pn6_A ST1022, 150AA long hypo 23.8 66 0.0023 25.6 3.7 45 74-119 3-48 (150)
151 2ia0_A Putative HTH-type trans 23.6 84 0.0029 26.1 4.4 44 74-118 17-61 (171)
152 2ba3_A NIKA; dimer, bacterial 23.3 30 0.001 23.2 1.2 34 1-34 4-39 (51)
153 1i1g_A Transcriptional regulat 23.0 85 0.0029 24.5 4.1 43 75-118 5-48 (141)
154 1fad_A Protein (FADD protein); 21.4 61 0.0021 24.6 2.9 32 75-107 13-44 (99)
155 2xsa_A Ogoga, hyaluronoglucosa 21.2 2.2E+02 0.0075 28.2 7.4 56 14-85 11-66 (447)
156 1qgp_A Protein (double strande 21.0 1.2E+02 0.004 22.2 4.3 46 72-118 12-61 (77)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2e-34 Score=233.58 Aligned_cols=105 Identities=41% Similarity=0.866 Sum_probs=99.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 020997 11 NVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASIGSRW 90 (318)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~G~kW 90 (318)
.++||+||+|||++|+++|++||. .+|..||+.++ +|+++||++||.++|+|.+++++||+|||.+|++++.+||++|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W 78 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW 78 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCH
Confidence 478999999999999999999998 58999999997 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 020997 91 STIAAQLPGRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 91 s~IAk~LpgRT~nq~KnRW~~llrkk~ 117 (318)
+.||++|||||+++|++||+.++++++
T Consensus 79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 79 AEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999998763
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=4.8e-34 Score=232.96 Aligned_cols=103 Identities=30% Similarity=0.637 Sum_probs=99.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 020997 14 KGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASIGSRWSTI 93 (318)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~G~kWs~I 93 (318)
||+||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~I 78 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA-KDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKI 78 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS-SCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHH
Confidence 799999999999999999997 59999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 94 AAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 94 Ak~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
|++|||||+++||+||+.++++...
T Consensus 79 a~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 79 SKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999988643
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=7.6e-34 Score=238.14 Aligned_cols=113 Identities=39% Similarity=0.796 Sum_probs=102.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHH
Q 020997 3 RAPCCDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSL 82 (318)
Q Consensus 3 r~~~~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llel 82 (318)
|..-..+|.+++|+||+|||++|+++|++||. .+|..||..++ +|+++||++||.++|+|.+++++||+|||.+|+++
T Consensus 16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGP-KRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp ------CTTCCCSCCCHHHHHHHHHHHHHTCS-CCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 34455789999999999999999999999998 58999999998 99999999999999999999999999999999999
Q ss_pred HHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 020997 83 FASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 83 v~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk~ 117 (318)
+.+||++|+.||++|||||+++|++||+.++++++
T Consensus 94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999998763
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=1.3e-33 Score=236.71 Aligned_cols=106 Identities=36% Similarity=0.683 Sum_probs=101.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 020997 8 DKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASIG 87 (318)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~G 87 (318)
.++.++||+||+|||++|+++|++||. +|..||+.++ +|+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 477899999999999999999999998 9999999998 8999999999999999999999999999999999999999
Q ss_pred CchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 88 SRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 88 ~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
++|+.||+.|||||+++||+||+.++++.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998774
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=2.7e-33 Score=236.06 Aligned_cols=104 Identities=39% Similarity=0.791 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 020997 14 KGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASIGSRWSTI 93 (318)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~G~kWs~I 93 (318)
||+||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP-QNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS-CCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 799999999999999999997 59999999998 8999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHhhhhc
Q 020997 94 AAQLPGRTDNDIKNYWNTKLKKKLIG 119 (318)
Q Consensus 94 Ak~LpgRT~nq~KnRW~~llrkk~~~ 119 (318)
|++|||||+++|++||+.++++++..
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988753
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.3e-31 Score=232.02 Aligned_cols=109 Identities=39% Similarity=0.826 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHHh
Q 020997 7 CDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASI 86 (318)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~ 86 (318)
..+|.+++|+||+|||++|+++|.+||. .+|..||..++ +|++.||++||.++|+|.+++++||+|||.+|++++.+|
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 128 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 128 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCS-CCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCc-ccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH
Confidence 4679999999999999999999999997 58999999997 999999999999999999999999999999999999999
Q ss_pred CCchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 020997 87 GSRWSTIAAQLPGRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 87 G~kWs~IAk~LpgRT~nq~KnRW~~llrkk~ 117 (318)
|++|+.||++|||||+++||+||+.++++++
T Consensus 129 g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 129 GNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999998763
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.8e-30 Score=222.10 Aligned_cols=105 Identities=32% Similarity=0.703 Sum_probs=62.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-c
Q 020997 11 NVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASIGS-R 89 (318)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~G~-k 89 (318)
+++|++||+|||++|+++|++||. .+|..||+.++ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||. +
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~ 80 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKR 80 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCccc
Confidence 478999999999999999999997 59999999998 89999999999999999999999999999999999999996 7
Q ss_pred hHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 020997 90 WSTIAAQLPGRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 90 Ws~IAk~LpgRT~nq~KnRW~~llrkk~ 117 (318)
|+.||+.|||||+.+|++||+++|.+.+
T Consensus 81 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 108 (159)
T 1h89_C 81 WSVIAKHLKGRIGKQCRERWHNHLNPEV 108 (159)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence 9999999999999999999999887654
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-22 Score=151.19 Aligned_cols=67 Identities=28% Similarity=0.587 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHH
Q 020997 8 DKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDED 76 (318)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED 76 (318)
..|.+++|+||+|||++|+++|++||. .+|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGK-NQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCS-SCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 468899999999999999999999997 59999999998 99999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.82 E-value=6.6e-21 Score=159.40 Aligned_cols=76 Identities=28% Similarity=0.630 Sum_probs=52.0
Q ss_pred ecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 020997 41 LPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASIGS-RWSTIAAQLPGRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 41 Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~LpgRT~nq~KnRW~~llrkk~ 117 (318)
||+.++ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||+.|||||+.+|++||+++|.+.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 77 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEV 77 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSS
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccc
Confidence 677777 99999999999999999999999999999999999999996 79999999999999999999999887643
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.75 E-value=5.4e-19 Score=162.63 Aligned_cols=107 Identities=22% Similarity=0.316 Sum_probs=93.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC----CceeecccccccccCCccccccccccCCCCC-----------------
Q 020997 9 KANVKKGPWSPEEDAKLKEYIEKNGTGG----NWIALPHKAGLMRCGKSCRLRWLNYLRPNIN----------------- 67 (318)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~~----~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ik----------------- 67 (318)
.+.++|++||+|||+.|+++|+++|... .|..||+.|+ |||+.|||.||+.+|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678999999999999999999998732 2999999998 99999999999999999997
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 020997 68 ------------HGEFSDDEDRIICSLFAS-I------------------------------------------------ 86 (318)
Q Consensus 68 ------------k~~WT~EED~~Llelv~k-~------------------------------------------------ 86 (318)
+..||.+||-.|+..+.+ +
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 889999999999998877 1
Q ss_pred -----CC----chHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 87 -----GS----RWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 87 -----G~----kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
|. .|.+||+.+|+||.+++|+||+..|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 21 7999999999999999999999988776
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.74 E-value=7.6e-19 Score=135.24 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=47.8
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 020997 54 CRLRWLNYLRPNINHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLK 114 (318)
Q Consensus 54 CreRW~n~L~P~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llr 114 (318)
.--||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 9999999999996543
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=122.39 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=55.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhhhhc
Q 020997 61 YLRPNINHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKKLIG 119 (318)
Q Consensus 61 ~L~P~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~~ 119 (318)
+|+|.+++++||+|||++|++++++||.+|.+||+ |+|||++|||+||+.+|++.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence 79999999999999999999999999999999999 88999999999999999998753
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.68 E-value=5e-17 Score=123.81 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=54.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 62 LRPNINHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 62 L~P~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
++|.+++++||+|||++|++++.+||.+|..||++|||||+++||+||+.++++++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999998765
No 14
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.67 E-value=1.2e-17 Score=139.88 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc---ccccCCccccccccccC-----CCCCCC-CCCHHHH
Q 020997 6 CCDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAG---LMRCGKSCRLRWLNYLR-----PNINHG-EFSDDED 76 (318)
Q Consensus 6 ~~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg---~~Rt~kQCreRW~n~L~-----P~ikk~-~WT~EED 76 (318)
.-.++..++++||+|||+.|+++|++||. ++|..|+..+. .+||+.+|++||+++|+ |.++++ +|++||+
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~-G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~ 87 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLL 87 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGG-GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHH
Confidence 34577899999999999999999999998 59999999851 38999999999999998 999999 9999999
Q ss_pred HHHHHHHHHhCCchHH
Q 020997 77 RIICSLFASIGSRWST 92 (318)
Q Consensus 77 ~~Llelv~k~G~kWs~ 92 (318)
.+|++++..+|++|.+
T Consensus 88 ~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 88 DRVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccchhc
Confidence 9999999999999976
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.5e-17 Score=122.17 Aligned_cols=57 Identities=26% Similarity=0.545 Sum_probs=54.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCC
Q 020997 9 KANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNIN 67 (318)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ik 67 (318)
.|.+++++||+|||++|+++|++||. .+|..||+.++ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ-QDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT-TCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 58899999999999999999999996 59999999998 99999999999999999876
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=8.5e-17 Score=118.16 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=52.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+|.+++++||+|||++|+++|.+|| ++|+.||++|+|||+.|||+||+++|++.+.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 5999999999999999999999999887643
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=3e-17 Score=117.31 Aligned_cols=52 Identities=40% Similarity=0.843 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCC
Q 020997 12 VKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPN 65 (318)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ 65 (318)
++||+||+|||++|+++|.+||. .+|..||+.++ +|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGP-KRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCT-TCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc-ChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 68999999999999999999997 58999999998 999999999999999985
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.63 E-value=4.2e-17 Score=123.16 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccc-cccCCccccccccccCCCCCCCCCC
Q 020997 8 DKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGL-MRCGKSCRLRWLNYLRPNINHGEFS 72 (318)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~-~Rt~kQCreRW~n~L~P~ikk~~WT 72 (318)
.+|..++++||+|||++|+++|++||. .+|..||+.+++ +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCS-SCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCC-CcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 467889999999999999999999997 599999999975 8999999999999999999998764
No 19
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.63 E-value=8.7e-17 Score=134.85 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=72.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc---ccccCCcccccccccc-----CCCCCCCCCCHHH-HHHH
Q 020997 9 KANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAG---LMRCGKSCRLRWLNYL-----RPNINHGEFSDDE-DRII 79 (318)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg---~~Rt~kQCreRW~n~L-----~P~ikk~~WT~EE-D~~L 79 (318)
+...++++||+|||+.|+++|++||. ++|..|+.... .+||+.||++||+++| +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT-GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS-SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 45678999999999999999999998 69999998641 3899999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 020997 80 CSLFASIGSR 89 (318)
Q Consensus 80 lelv~k~G~k 89 (318)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=4.4e-16 Score=111.11 Aligned_cols=50 Identities=28% Similarity=0.569 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 66 INHGEFSDDEDRIICSLFASIGS-RWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 66 ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
+++++||+|||.+|+++|.+||. +|+.||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 999999999999999999999999864
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=5.2e-17 Score=115.98 Aligned_cols=52 Identities=37% Similarity=0.748 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCC
Q 020997 12 VKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPN 65 (318)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ 65 (318)
+++++||+|||++|+++|++||. .+|..||+.++ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGT-DDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCS-SCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999998 59999999998 899999999999999985
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.60 E-value=8.9e-16 Score=109.63 Aligned_cols=50 Identities=30% Similarity=0.668 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 66 INHGEFSDDEDRIICSLFASIGS-RWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 66 ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
+++++||+|||++|+++|.+||. +|+.||+.|+|||+.|||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998864
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=1.7e-15 Score=114.40 Aligned_cols=59 Identities=27% Similarity=0.333 Sum_probs=54.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHHhhhhc
Q 020997 61 YLRPNINHGEFSDDEDRIICSLFASIG-SRWSTIAAQLP--GRTDNDIKNYWNTKLKKKLIG 119 (318)
Q Consensus 61 ~L~P~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~Lp--gRT~nq~KnRW~~llrkk~~~ 119 (318)
..+|..++++||+|||++|+++|.+|| ++|+.||+.|+ |||+.|||+||+++|++.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 456778999999999999999999999 69999999999 999999999999999987653
No 24
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.59 E-value=1.6e-15 Score=108.96 Aligned_cols=50 Identities=28% Similarity=0.388 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHHhh
Q 020997 67 NHGEFSDDEDRIICSLFASIG-SRWSTIAAQLP--GRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 67 kk~~WT~EED~~Llelv~k~G-~kWs~IAk~Lp--gRT~nq~KnRW~~llrkk 116 (318)
++++||+|||++|+++|.+|| ++|+.||+.|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 69999999999 999999999999998753
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.6e-15 Score=111.78 Aligned_cols=53 Identities=11% Similarity=0.268 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
.+.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||++++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999988764
No 26
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=114.48 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=52.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
.|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+++|++.+.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence 4778999999999999999999999 7999999999999999999999999887653
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=2.9e-16 Score=117.63 Aligned_cols=56 Identities=30% Similarity=0.501 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc-ccccCCccccccccccCCCCC
Q 020997 11 NVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAG-LMRCGKSCRLRWLNYLRPNIN 67 (318)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg-~~Rt~kQCreRW~n~L~P~ik 67 (318)
..+|++||+|||++|+++|++||. .+|..||+.++ .+|++.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE-GNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC-CchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 457899999999999999999998 59999998754 379999999999999999875
No 28
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.8e-15 Score=113.36 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIG------SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G------~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+|.+++++||+|||++|++++.+|| .+|.+||++|+|||+.||++||+.+|++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 7999999999999999999999988877653
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=6.1e-16 Score=113.99 Aligned_cols=56 Identities=18% Similarity=0.471 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCC
Q 020997 9 KANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNI 66 (318)
Q Consensus 9 Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~i 66 (318)
.+.+.+++||+|||++|+++|++||. .+|..||+.++ +|+++||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~-~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGF-GNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCT-TCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc-CcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 47899999999999999999999996 49999999998 8999999999999998753
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=6.9e-15 Score=110.17 Aligned_cols=52 Identities=21% Similarity=0.428 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC--CCCHHHHHHHHHHHHHhhh
Q 020997 66 INHGEFSDDEDRIICSLFASIG-SRWSTIAAQLP--GRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 66 ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~Lp--gRT~nq~KnRW~~llrkk~ 117 (318)
.++++||+|||++|+++|.+|| .+|+.||+.++ |||+.|||+||++++|..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4788999999999999999999 59999999865 9999999999999998754
No 31
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-16 Score=118.46 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCC
Q 020997 7 CDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGE 70 (318)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~ 70 (318)
...|.+++++||+|||++|+++|++||. +|..||+ ++ +|+++||++||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT--QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT--CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC--CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 4679999999999999999999999998 9999999 55 69999999999999999877653
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=1.9e-14 Score=105.41 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=46.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHhhhCC-CCCHHHHHHHHHHHH
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIG-SRWSTIAAQLP-GRTDNDIKNYWNTKL 113 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~Lp-gRT~nq~KnRW~~ll 113 (318)
+..+.+++||+|||++|+++|++|| ++|..||++|+ +||+.|||+||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3457789999999999999999999 89999999999 999999999998764
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-15 Score=120.74 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=54.3
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 020997 60 NYLRPNINHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 60 n~L~P~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk~ 117 (318)
..++|.+++++||+|||++|++++.+||++|+.||++|+|||+++||+||+.++++..
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3578899999999999999999999999999999999999999999999999988753
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-15 Score=116.42 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCC----CCceeecccccccccCCccccccccccCCCCCCCC
Q 020997 8 DKANVKKGPWSPEEDAKLKEYIEKNGTG----GNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGE 70 (318)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~----~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~ 70 (318)
.+|.+.+++||+|||++|+++|++||.. .+|..||+.|+ +||+.||++||+++|.+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999999952 38999999998 99999999999999998877654
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.49 E-value=3.3e-15 Score=107.27 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecccccc-cccCCccccccccccC
Q 020997 13 KKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGL-MRCGKSCRLRWLNYLR 63 (318)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~-~Rt~kQCreRW~n~L~ 63 (318)
+|++||+|||++|+++|++||. .+|..||..+++ +|++.||++||.++|+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGE-GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT-TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999997 599999999875 6999999999999875
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=5.1e-15 Score=108.49 Aligned_cols=52 Identities=25% Similarity=0.477 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCcccccccccc
Q 020997 10 ANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYL 62 (318)
Q Consensus 10 p~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L 62 (318)
..+.+++||+|||++|+++|++||. .+|..||+.++.+|+++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~-~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGL-GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTT-TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999997 599999999987899999999999875
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=7e-15 Score=111.91 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCC
Q 020997 7 CDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINH 68 (318)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk 68 (318)
...|.+++++||+|||++|+++|++||. +|..||+.++ +||+.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999998 9999999998 999999999999999876665
No 38
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.41 E-value=2.3e-13 Score=104.57 Aligned_cols=52 Identities=10% Similarity=0.282 Sum_probs=48.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 64 PNINHGEFSDDEDRIICSLFASIG----SRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 64 P~ikk~~WT~EED~~Llelv~k~G----~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
+.+.+++||.|||.+|++++.+|| .+|.+||++|||||+++|++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 457889999999999999999999 6899999999999999999999988754
No 39
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.39 E-value=6.1e-14 Score=107.84 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCC
Q 020997 2 GRAPCCDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNIN 67 (318)
Q Consensus 2 gr~~~~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ik 67 (318)
+|.--...|.++||+||+|||++|+++|++||. .|..||+.+ +|++.||+.||.. |....+
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~--kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN--DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSS--CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC--CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 355667889999999999999999999999998 699999998 6999999999974 554443
No 40
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=6.2e-13 Score=99.09 Aligned_cols=51 Identities=16% Similarity=0.367 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHh---hhCCCCCHHHHHHHHHHHHHhh
Q 020997 66 INHGEFSDDEDRIICSLFASIGSRWSTIA---AQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 66 ikk~~WT~EED~~Llelv~k~G~kWs~IA---k~LpgRT~nq~KnRW~~llrkk 116 (318)
-++.+||+|||+.|+++|++||.+|+.|+ .++++||+.++|+||++++|+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 5789999999999999998763
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.35 E-value=1.5e-13 Score=115.33 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHHh
Q 020997 7 CDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASI 86 (318)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~ 86 (318)
...|.+++|+||+|||++|+++|.+||. .|..||+.++ +|++.||+.||.++|++.+..++|+.+- +......
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~--~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~k 119 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLGS--KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSK 119 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSCS--CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC-
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhh
Confidence 4578999999999999999999999997 8999999998 9999999999999999999999988763 1111233
Q ss_pred CCchHHHhhhC
Q 020997 87 GSRWSTIAAQL 97 (318)
Q Consensus 87 G~kWs~IAk~L 97 (318)
+.+|+.|++.|
T Consensus 120 k~~~~~i~k~~ 130 (131)
T 3zqc_A 120 KRKAADVPKKL 130 (131)
T ss_dssp -----------
T ss_pred hhhhhhcchhc
Confidence 46788888765
No 42
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.34 E-value=1.1e-12 Score=109.51 Aligned_cols=55 Identities=25% Similarity=0.527 Sum_probs=50.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk~ 117 (318)
.+..++++||+|||++|+++|.+||.+|..||+.|+|||+.||+.||.+.|.+.+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~ 60 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI 60 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccc
Confidence 4568899999999999999999999999999999999999999999999887654
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.34 E-value=2.4e-13 Score=111.27 Aligned_cols=81 Identities=22% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc---ccccCCcccccccccc-----CCCCCCCCCCHHHHH
Q 020997 6 CCDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAG---LMRCGKSCRLRWLNYL-----RPNINHGEFSDDEDR 77 (318)
Q Consensus 6 ~~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg---~~Rt~kQCreRW~n~L-----~P~ikk~~WT~EED~ 77 (318)
...++..++++||+|||+.|+++|++||. ++|..|+..+. .+||+.+|++||++++ +|.++++.=++.|-.
T Consensus 5 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~-g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l 83 (105)
T 2aje_A 5 LEDPQRRIRRPFSVAEVEALVQAVEKLGT-GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELL 83 (105)
T ss_dssp ----CCCCCCSCCHHHHHHHHHHHHHHCS-SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCC-CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHH
Confidence 34567889999999999999999999998 69999998652 4899999999999998 699999988887766
Q ss_pred H-HHHHHHHhC
Q 020997 78 I-ICSLFASIG 87 (318)
Q Consensus 78 ~-Llelv~k~G 87 (318)
. +++|...+|
T Consensus 84 ~rv~~~~~~~~ 94 (105)
T 2aje_A 84 NRVLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5 777776665
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.34 E-value=6.4e-13 Score=103.40 Aligned_cols=48 Identities=10% Similarity=0.246 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHH
Q 020997 65 NINHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTK 112 (318)
Q Consensus 65 ~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~l 112 (318)
...+++||+|||++|++++.+||.+|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999865
No 45
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.32 E-value=1.2e-12 Score=105.47 Aligned_cols=52 Identities=29% Similarity=0.657 Sum_probs=48.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 65 NINHGEFSDDEDRIICSLFASIGS-RWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 65 ~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
++++++||+|||++|+++|.+||. +|..||+.|||||+.||+.||.++|.+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 53 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCc
Confidence 378999999999999999999997 7999999999999999999999987654
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.32 E-value=2e-12 Score=101.57 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-chHHHhhh----CCCCCHHHHHHHHHHHHHhhh
Q 020997 69 GEFSDDEDRIICSLFASIGS-RWSTIAAQ----LPGRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 69 ~~WT~EED~~Llelv~k~G~-kWs~IAk~----LpgRT~nq~KnRW~~llrkk~ 117 (318)
.+||+|||++|+++|++||. +|+.|++. |+|||+++||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999997 99999996 899999999999999998653
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.30 E-value=4.2e-13 Score=104.43 Aligned_cols=54 Identities=22% Similarity=0.406 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccc
Q 020997 5 PCCDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNY 61 (318)
Q Consensus 5 ~~~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~ 61 (318)
..+.++...+++||+|||++|+++|++||. +|..||+.|+ +||+.||++||.++
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~--~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 9 LAKSKGASAGREWTEQETLLLLEALEMYKD--DWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCCCSSCCSCCCCHHHHHHHHHHHHHSSS--CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred cCCccccccCCCcCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 356778888999999999999999999994 9999999999 89999999999998
No 48
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.29 E-value=3.9e-12 Score=104.06 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhhC----CCCCHHHHHHHHHHHHHhh
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIGS-RWSTIAAQL----PGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~L----pgRT~nq~KnRW~~llrkk 116 (318)
.+..++++||+|||++|+++|++||. +|+.|++.+ ++||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34578999999999999999999997 999999965 8999999999999999764
No 49
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.29 E-value=2.9e-12 Score=107.29 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=50.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhh----CCCCCHHHHHHHHHHHHHhh
Q 020997 62 LRPNINHGEFSDDEDRIICSLFASIGS-RWSTIAAQ----LPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 62 L~P~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~----LpgRT~nq~KnRW~~llrkk 116 (318)
+.+..++++||.|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 566788999999999999999999997 99999997 49999999999999999853
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.28 E-value=1e-12 Score=103.34 Aligned_cols=69 Identities=25% Similarity=0.363 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeccc----ccccccCCcccccccccc-----CCCCCCC-CCCHHHHHHHHHHHH
Q 020997 15 GPWSPEEDAKLKEYIEKNGTGGNWIALPHK----AGLMRCGKSCRLRWLNYL-----RPNINHG-EFSDDEDRIICSLFA 84 (318)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~----lg~~Rt~kQCreRW~n~L-----~P~ikk~-~WT~EED~~Llelv~ 84 (318)
++||+|||+.|+++|++||. ++|..|++. ++ +||+.+|++||+++| +|.++++ +..++...+++.|..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~-g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGT-GRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCS-SCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998 699999985 55 899999999999998 6776665 577787788888875
Q ss_pred H
Q 020997 85 S 85 (318)
Q Consensus 85 k 85 (318)
.
T Consensus 79 ~ 79 (83)
T 2ckx_A 79 Y 79 (83)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.28 E-value=1.9e-12 Score=119.30 Aligned_cols=55 Identities=29% Similarity=0.527 Sum_probs=48.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 64 PNINHGEFSDDEDRIICSLFASIGSR------WSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 64 P~ikk~~WT~EED~~Llelv~k~G~k------Ws~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+.+++++||+|||++|+++|+++|++ |++||++|||||+++||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45789999999999999999999875 99999999999999999999999999865
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.93 E-value=3.8e-13 Score=106.61 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=51.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCC
Q 020997 6 CCDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRP 64 (318)
Q Consensus 6 ~~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P 64 (318)
...-|.+++|+||+|||++|+++|.+||. +|..||..++ +||+.||+.||.++|..
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~--~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGR--NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 45678999999999999999999999998 8999999998 99999999999999863
No 53
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.24 E-value=5.7e-12 Score=102.21 Aligned_cols=50 Identities=22% Similarity=0.474 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHhhh
Q 020997 68 HGEFSDDEDRIICSLFASIGS-RWSTIAAQLPGRTDNDIKNYWNTKLKKKL 117 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G~-kWs~IAk~LpgRT~nq~KnRW~~llrkk~ 117 (318)
+++||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i 51 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPAL 51 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccc
Confidence 579999999999999999996 89999999999999999999999887643
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.22 E-value=1.5e-11 Score=98.52 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 67 NHGEFSDDEDRIICSLFASIG----SRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 67 kk~~WT~EED~~Llelv~k~G----~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
.+++||.|||.+|++++.+|| .+|.+||+.|||||+++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999996 68999999999999999999999988764
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.21 E-value=1.7e-11 Score=102.72 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHhhh----CCCCCHHHHHHHHHHHHHhh
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIGS-RWSTIAAQ----LPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~----LpgRT~nq~KnRW~~llrkk 116 (318)
....++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999997 99999986 48999999999999999764
No 56
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.21 E-value=2e-12 Score=99.40 Aligned_cols=58 Identities=14% Similarity=0.326 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--CCceeecccccccccCCccccccccccC
Q 020997 5 PCCDKANVKKGPWSPEEDAKLKEYIEKNGTG--GNWIALPHKAGLMRCGKSCRLRWLNYLR 63 (318)
Q Consensus 5 ~~~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~--~~W~~Ia~~lg~~Rt~kQCreRW~n~L~ 63 (318)
+.-.++.+.+++||+|||++|+++|++||.. ..|..||+.|+ +||++||+.||.+++.
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4457788999999999999999999999931 38999999998 9999999999998765
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.98 E-value=5.7e-10 Score=89.39 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=59.1
Q ss_pred CCccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhC-----CCCCHHHHHHHHHHHHHhhhhc
Q 020997 51 GKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASIGSRWSTIAAQL-----PGRTDNDIKNYWNTKLKKKLIG 119 (318)
Q Consensus 51 ~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~L-----pgRT~nq~KnRW~~llrkk~~~ 119 (318)
+.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.+..
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 46678999999976 89999999999999999999999999998 5899999999999999887653
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=8.8e-10 Score=81.31 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHH
Q 020997 67 NHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKL 113 (318)
Q Consensus 67 kk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~ll 113 (318)
..++||+||++++++++.+||++|..||.+||+||..+|+.+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997543
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.84 E-value=4.6e-09 Score=80.30 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 65 NINHGEFSDDEDRIICSLFASIG----SRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 65 ~ikk~~WT~EED~~Llelv~k~G----~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
..+.++||.|||++|.+++.+|+ .+|.+||+.| |||..+|++||+.+.+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 35678899999999999999997 5899999998 999999999999887653
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.83 E-value=3.1e-10 Score=90.93 Aligned_cols=49 Identities=12% Similarity=0.321 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC--CCceeecccccccccCCcccccccccc
Q 020997 13 KKGPWSPEEDAKLKEYIEKNGTG--GNWIALPHKAGLMRCGKSCRLRWLNYL 62 (318)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~~--~~W~~Ia~~lg~~Rt~kQCreRW~n~L 62 (318)
.+++||+|||++|.+++++||.+ ..|..||+.++ +||..||++||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 46899999999999999999842 47999999998 999999999998864
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.72 E-value=1.3e-08 Score=93.09 Aligned_cols=49 Identities=10% Similarity=0.306 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 67 NHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 67 kk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
...+||+||+.++++++.+||++|..||+.|++||..|||++|....++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999977665
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.61 E-value=6.9e-09 Score=77.28 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCceeecc---cccccccCCccccccccccC
Q 020997 11 NVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPH---KAGLMRCGKSCRLRWLNYLR 63 (318)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~---~lg~~Rt~kQCreRW~n~L~ 63 (318)
.-++.+||+|||+.|++.|++||. +|..|+. .+. +|+....++||++..+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN--HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH--hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 347899999999999999999998 9999994 444 8999999999998764
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=74.72 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccc
Q 020997 7 CDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNY 61 (318)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~ 61 (318)
..+.....++||+||++++.+++.+||. +|..||..++ +|+..||.++|...
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 4555567799999999999999999997 8999999888 99999999998654
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.54 E-value=7.9e-08 Score=73.78 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 68 HGEFSDDEDRIICSLFASIGS----RWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G~----kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
...||.+|+.+|.+++..|+. +|.+||..+||||..+|+.||..+++.+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 457999999999999999984 7999999999999999999999885543
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.39 E-value=2e-07 Score=93.56 Aligned_cols=46 Identities=11% Similarity=0.311 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 020997 69 GEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLK 114 (318)
Q Consensus 69 ~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llr 114 (318)
..||+||-.++++++.+||..|..||+.++.||..|||++|....+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999975433
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.38 E-value=3.9e-08 Score=75.17 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=44.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--CCCceeecccccccccCCccccccccccC
Q 020997 10 ANVKKGPWSPEEDAKLKEYIEKNGT--GGNWIALPHKAGLMRCGKSCRLRWLNYLR 63 (318)
Q Consensus 10 p~lkKG~WT~EEDe~L~~lV~kyG~--~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~ 63 (318)
.+.+++.||+|||++|.+++++|+. ...|..||+.++ |+..+|+.||.....
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 4567889999999999999999974 247999999975 999999999987654
No 67
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.28 E-value=9.3e-07 Score=70.33 Aligned_cols=48 Identities=19% Similarity=0.348 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---chHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 69 GEFSDDEDRIICSLFASIGS---RWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 69 ~~WT~EED~~Llelv~k~G~---kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
--||.|||+.|+..+++-|. .|+.||+.|.+|+.++|++||+.+++-.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 35999999999999999997 8999999999999999999999998643
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.23 E-value=1.5e-07 Score=69.20 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCCceeecc-cccccccCCccccccccccC
Q 020997 14 KGPWSPEEDAKLKEYIEKN--------GTGGNWIALPH-KAGLMRCGKSCRLRWLNYLR 63 (318)
Q Consensus 14 KG~WT~EEDe~L~~lV~ky--------G~~~~W~~Ia~-~lg~~Rt~kQCreRW~n~L~ 63 (318)
|.+||+|||+.|+++|.+| |. .-|+.+++ .++ .||-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn-~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGN-ALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSS-HHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccH-HHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 33 36999999 666 8999999999999885
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.22 E-value=1.5e-06 Score=63.79 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CC-chHHHhh-hCCCCCHHHHHHHHHHHHH
Q 020997 68 HGEFSDDEDRIICSLFASI--------GS-RWSTIAA-QLPGRTDNDIKNYWNTKLK 114 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~--------G~-kWs~IAk-~LpgRT~nq~KnRW~~llr 114 (318)
+.+||+|||.+|++.|.++ |+ -|.++|+ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 54 5999999 7999999999999987664
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.18 E-value=3.3e-07 Score=83.85 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccC
Q 020997 7 CDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLR 63 (318)
Q Consensus 7 ~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~ 63 (318)
........++||+||++.+++++.+||. +|..||+.++ +||..||+.+|.++.+
T Consensus 126 pe~~~k~s~~WTeEE~~lFleAl~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 126 PEVIQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3445566789999999999999999997 8999999999 9999999999988764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=5.6e-06 Score=61.31 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=44.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhh-hCCCCCHHHHHHHHH
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIGSRWSTIAA-QLPGRTDNDIKNYWN 110 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G~kWs~IAk-~LpgRT~nq~KnRW~ 110 (318)
.|.+...+||+||-.+..+++.+||..|..|++ .|++||..+|...|.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 367788899999999999999999999999999 589999999998875
No 72
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.39 E-value=3.7e-07 Score=69.02 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---chHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 70 EFSDDEDRIICSLFASIGS---RWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 70 ~WT~EED~~Llelv~k~G~---kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
-||.|||+.|+..+++-|. .|+.||+.| +||++||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 899999999 99999999999988753
No 73
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.04 E-value=6.1e-07 Score=68.85 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCCceeecccccccccCCccccccccccCC
Q 020997 14 KGPWSPEEDAKLKEYIEKNGT--GGNWIALPHKAGLMRCGKSCRLRWLNYLRP 64 (318)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~--~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P 64 (318)
...||.||+.+|.+++..|+. ...|..||..++ +|+..+|+.||...+.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 468999999999999999964 247999999999 89999999999887653
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.98 E-value=1.1e-05 Score=64.45 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=51.9
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCC-----CCCHHHHHHHHHHHHHhhhhcc
Q 020997 56 LRWLNYLRPNINHGEFSDDEDRIICSLFASIGSRWSTIAAQLP-----GRTDNDIKNYWNTKLKKKLIGI 120 (318)
Q Consensus 56 eRW~n~L~P~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~Lp-----gRT~nq~KnRW~~llrkk~~~~ 120 (318)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++.+..+
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45666665 3689999999999999999999999998863 7999999999999998876543
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.91 E-value=2e-06 Score=66.01 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chHHHhhhCCCCCHHHHHHHHH
Q 020997 68 HGEFSDDEDRIICSLFASIGS----RWSTIAAQLPGRTDNDIKNYWN 110 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G~----kWs~IAk~LpgRT~nq~KnRW~ 110 (318)
..+||.+|+++|.++...|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999985 8999999999999999998763
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.88 E-value=2.3e-05 Score=74.61 Aligned_cols=100 Identities=16% Similarity=0.237 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCcccc-------ccccc--------------------------
Q 020997 15 GPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRL-------RWLNY-------------------------- 61 (318)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCre-------RW~n~-------------------------- 61 (318)
+.||..+...++.++.+||. .+|..||..++ +++...++. ||...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr-~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR-DDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT-TCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998 69999999997 788755432 11000
Q ss_pred --------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----chHHHhh------------hCCCCCHHHHHHH
Q 020997 62 --------------L---RPNINHGEFSDDEDRIICSLFASIGS----RWSTIAA------------QLPGRTDNDIKNY 108 (318)
Q Consensus 62 --------------L---~P~ikk~~WT~EED~~Llelv~k~G~----kWs~IAk------------~LpgRT~nq~KnR 108 (318)
| .+.-+...||++||+.|+-++.+||- .|..|.. ++..||+..|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 1 12224567999999999999999994 7999962 3467999999999
Q ss_pred HHHHHHhh
Q 020997 109 WNTKLKKK 116 (318)
Q Consensus 109 W~~llrkk 116 (318)
-+.+++-.
T Consensus 269 c~tLi~~i 276 (304)
T 1ofc_X 269 CNTLITLI 276 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.62 E-value=8.5e-05 Score=59.19 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHH
Q 020997 68 HGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNT 111 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~ 111 (318)
...||+||.++..+++..||++|..||..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999988753
No 78
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.58 E-value=8.8e-06 Score=62.39 Aligned_cols=45 Identities=11% Similarity=0.250 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCCceeecccccccccCCccccccc
Q 020997 14 KGPWSPEEDAKLKEYIEKNGT--GGNWIALPHKAGLMRCGKSCRLRWL 59 (318)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~--~~~W~~Ia~~lg~~Rt~kQCreRW~ 59 (318)
.+.||.||++.|.+++++|.. ...|.+||+.++ ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 468999999999999999964 347999999998 899999999984
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.56 E-value=0.00015 Score=54.67 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHhh-hCCCCCHHHHHHHHH
Q 020997 68 HGEFSDDEDRIICSLFASIGSRWSTIAA-QLPGRTDNDIKNYWN 110 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G~kWs~IAk-~LpgRT~nq~KnRW~ 110 (318)
..+||+||-.+..+++.+||..|..|++ .||+||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 599999999999886
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=4.7e-05 Score=56.30 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=44.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecc-cccccccCCccccccc
Q 020997 8 DKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPH-KAGLMRCGKSCRLRWL 59 (318)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~-~lg~~Rt~kQCreRW~ 59 (318)
-.|.++...||+||-++..+++.+||. +|..|++ .++ +|+..+|.+.|.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK--NFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHh
Confidence 468888999999999999999999998 8999998 477 899999988764
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.22 E-value=7.1e-05 Score=75.15 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccc
Q 020997 8 DKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNY 61 (318)
Q Consensus 8 ~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~ 61 (318)
.+......+||.||-+++++++.+||. +|..||+.++ +|+..||+..|.++
T Consensus 374 e~~~~~~~~WT~eE~~~f~~al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 374 EVIQKCNARWTTEEQLLAVQAIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCCCCSCCCHHHHHHHHHHHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344456789999999999999999997 9999999999 99999999998764
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.20 E-value=0.00026 Score=54.72 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CchHHHhhhCC----CCCHHHHHHHHHHHHHhh
Q 020997 68 HGEFSDDEDRIICSLFASIG----------SRWSTIAAQLP----GRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G----------~kWs~IAk~Lp----gRT~nq~KnRW~~llrkk 116 (318)
...||.+|-.+||+++.++. ..|..||..|. .||+.||+++|.++.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999997642 16999998863 799999999999988764
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.10 E-value=8.6e-05 Score=59.35 Aligned_cols=48 Identities=10% Similarity=0.256 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc----ccccCCcccccccccc
Q 020997 13 KKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAG----LMRCGKSCRLRWLNYL 62 (318)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg----~~Rt~kQCreRW~n~L 62 (318)
...+||.||++.|++++++||. .|..|+.... .+|+..+.++||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999998 8999999883 2699999999987653
No 84
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.94 E-value=0.00015 Score=54.83 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CCCceeecccccccccCCccccccccccC
Q 020997 15 GPWSPEEDAKLKEYIEKNGT-GGNWIALPHKAGLMRCGKSCRLRWLNYLR 63 (318)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~-~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~ 63 (318)
-.||.|||..|+..+.+-|. ...|..||+.++ |++.|+.+||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK 62 (70)
Confidence 46999999999999999997 347999999885 999999999987654
No 85
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.63 E-value=0.0035 Score=61.13 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCcccc--------------------------------------
Q 020997 15 GPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRL-------------------------------------- 56 (318)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCre-------------------------------------- 56 (318)
+-||.-+=..++.++++||. .+...||..++.+++...++.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR-~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGR-NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCT-TCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-hHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998 689999998854466533331
Q ss_pred ----------ccccc-c--CCCC-CCCCCCHHHHHHHHHHHHHhC----CchHHHhhh------------CCCCCHHHHH
Q 020997 57 ----------RWLNY-L--RPNI-NHGEFSDDEDRIICSLFASIG----SRWSTIAAQ------------LPGRTDNDIK 106 (318)
Q Consensus 57 ----------RW~n~-L--~P~i-kk~~WT~EED~~Llelv~k~G----~kWs~IAk~------------LpgRT~nq~K 106 (318)
-|... + .++- +...||++||+.|+-++.+|| +.|..|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 11110 0 1111 345699999999999999999 479999543 3479999999
Q ss_pred HHHHHHHHhhhh
Q 020997 107 NYWNTKLKKKLI 118 (318)
Q Consensus 107 nRW~~llrkk~~ 118 (318)
.|.+.|++-...
T Consensus 283 rRc~tLi~~IeK 294 (374)
T 2y9y_A 283 RRGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999875443
No 86
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.55 E-value=0.00043 Score=55.08 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CCCceeecccccccccCCcccccccc
Q 020997 15 GPWSPEEDAKLKEYIEKNGT-GGNWIALPHKAGLMRCGKSCRLRWLN 60 (318)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~-~~~W~~Ia~~lg~~Rt~kQCreRW~n 60 (318)
-.||.|||..|+...++-|. ...|..||+.++ +|++.|+++||+.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 46999999999999999987 448999999998 8999999999965
No 87
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.34 E-value=0.00077 Score=53.61 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccc
Q 020997 14 KGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWL 59 (318)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~ 59 (318)
...||+||.++..++..+||. +|..|++.++ +|+..+|-+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK--~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK--NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT--CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CHHHHHHHcC-CCCHHHHHHHHh
Confidence 467999999999999999998 8999999888 999999988764
No 88
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.34 E-value=0.00082 Score=50.63 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCceeecc-cccccccCCccccccc
Q 020997 13 KKGPWSPEEDAKLKEYIEKNGTGGNWIALPH-KAGLMRCGKSCRLRWL 59 (318)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~-~lg~~Rt~kQCreRW~ 59 (318)
....||+||-++..+++.+||. +|..|++ .++ +|+..+|.+.|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 3468999999999999999998 8999998 477 899999988764
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.52 E-value=0.00081 Score=51.96 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC------C--CCCceeeccccc---ccccCCcccccccccc
Q 020997 13 KKGPWSPEEDAKLKEYIEKNG------T--GGNWIALPHKAG---LMRCGKSCRLRWLNYL 62 (318)
Q Consensus 13 kKG~WT~EEDe~L~~lV~kyG------~--~~~W~~Ia~~lg---~~Rt~kQCreRW~n~L 62 (318)
+...||.+|-..|+++....- . ...|..||..|. ..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 457899999999999997531 1 126999998864 5699999999998764
No 90
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.86 E-value=0.2 Score=37.27 Aligned_cols=46 Identities=7% Similarity=0.030 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc---hHHHhhhC--CCCCHHHHHHHHHHH
Q 020997 67 NHGEFSDDEDRIICSLFASIGSR---WSTIAAQL--PGRTDNDIKNYWNTK 112 (318)
Q Consensus 67 kk~~WT~EED~~Llelv~k~G~k---Ws~IAk~L--pgRT~nq~KnRW~~l 112 (318)
.+-.||+|.-+..++++.++|.. |..|-+.| +|.|..+|+.|...+
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45679999999999999999964 78998875 799999999987654
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.48 E-value=0.016 Score=46.22 Aligned_cols=48 Identities=10% Similarity=0.279 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeeccccc----ccccCCccccccccc
Q 020997 12 VKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAG----LMRCGKSCRLRWLNY 61 (318)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg----~~Rt~kQCreRW~n~ 61 (318)
++-..||.||.+.|++++++|.- .|..|+.... ..|+..+.++||..+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 34468999999999999999998 8999987753 247777777777654
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.76 E-value=0.088 Score=46.28 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCceeecccc
Q 020997 4 APCCDKANVKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKA 45 (318)
Q Consensus 4 ~~~~~Kp~lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~l 45 (318)
-+++.++.-....||++||..|+..|.+||- ++|..|..-.
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~-g~w~~Ir~D~ 164 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGY-GSWEMIKMDP 164 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCT-TCHHHHHHCS
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCc-CcHHHHHhCh
Confidence 3555666666678999999999999999998 5899885533
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.02 E-value=0.26 Score=46.82 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 020997 68 HGEFSDDEDRIICSLFASIGS-RWSTIAAQLPGRTDNDIKNYWNTKLK 114 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G~-kWs~IAk~LpgRT~nq~KnRW~~llr 114 (318)
.+.||..+...++.++.+||. .|..||..|+|+|...|+.+......
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 557999999999999999996 89999999999999999887665544
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.92 E-value=0.21 Score=43.86 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CchHHHhhh--CCCCCHHHHHHHHHHHHHh
Q 020997 67 NHGEFSDDEDRIICSLFASIG---SRWSTIAAQ--LPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 67 kk~~WT~EED~~Llelv~k~G---~kWs~IAk~--LpgRT~nq~KnRW~~llrk 115 (318)
....||+.|-+.|+.++.+|| .+|..|+.. |.+||...|+......+..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 489999864 8999999999877766554
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=86.72 E-value=0.21 Score=37.14 Aligned_cols=48 Identities=8% Similarity=-0.003 Sum_probs=33.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC-Cceeeccccc-ccccCCcccccc
Q 020997 11 NVKKGPWSPEEDAKLKEYIEKNGTGG-NWIALPHKAG-LMRCGKSCRLRW 58 (318)
Q Consensus 11 ~lkKG~WT~EEDe~L~~lV~kyG~~~-~W~~Ia~~lg-~~Rt~kQCreRW 58 (318)
...+-.||+|..++.+++|++.|... .++.|.+.|+ .+.|..++.-+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL 53 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence 45678999999999999999999521 3566766665 134445544433
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=82.17 E-value=1.1 Score=41.85 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeeccccc
Q 020997 15 GPWSPEEDAKLKEYIEKNGTGGNWIALPHKAG 46 (318)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg 46 (318)
..|+.+||..|+..|-+||. ++|..|..-..
T Consensus 169 c~W~~~dD~~LLvGIykyGy-G~We~Ir~Dp~ 199 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGY-GSWTQIRDDPF 199 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCT-TCHHHHHHCTT
T ss_pred CCcChHHHHHHHHHHHHHcC-CcHHHHhcCcc
Confidence 46999999999999999999 69999965443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=79.32 E-value=4.1 Score=37.86 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CchHHHhh--hCCCCCHHHHHHHHHHHHHh
Q 020997 68 HGEFSDDEDRIICSLFASIG---SRWSTIAA--QLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G---~kWs~IAk--~LpgRT~nq~KnRW~~llrk 115 (318)
+++||+-|-+.|++++.+|| .+|..|+. .|+.++...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 48999976 48999999999988876654
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=68.43 E-value=7.2 Score=27.01 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 71 FSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 71 WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
++ +.++.++.++-..|-.+.+||..| |-+...|+.+....+++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44 445556666667789999999999 88999999887665544
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=67.90 E-value=7.3 Score=27.81 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHH----hCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 71 FSDDEDRIICSLFAS----IGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 71 WT~EED~~Llelv~k----~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
.++.| +.++.+.-- .|..|.+||..| |-+...|+.+....+++.
T Consensus 11 L~~~e-r~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSERE-AMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 44444 455555554 578999999999 999999999877665543
No 100
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=64.23 E-value=22 Score=27.66 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccC------CCCCCCCCCHHHHHHHHHHHHHhCC
Q 020997 15 GPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLR------PNINHGEFSDDEDRIICSLFASIGS 88 (318)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~------P~ikk~~WT~EED~~Llelv~k~G~ 88 (318)
...|.++-..++.++. -|. .-..||+.++ .+...++ ||..... ..-.....+++++..|+++...-+-
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~--s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV--SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC--CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC--CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 4578888888887763 454 6788998887 3333332 2322211 1112235788888888887433223
Q ss_pred chHHHhhhCCC--CCHHHHHHHHH
Q 020997 89 RWSTIAAQLPG--RTDNDIKNYWN 110 (318)
Q Consensus 89 kWs~IAk~Lpg--RT~nq~KnRW~ 110 (318)
.-.+|+..| | -+...|....+
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r~l~ 101 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILNVIK 101 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHHHHH
Confidence 457888888 4 56666765443
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=63.56 E-value=7.7 Score=27.30 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHHHHHHHH----HhCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 75 EDRIICSLFA----SIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 75 ED~~Llelv~----k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
.++.++.+.- ..|..+.+||+.| |-|...|+.+....+++-
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444555554 3478999999999 999999999887666543
No 102
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=55.74 E-value=65 Score=26.13 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=51.5
Q ss_pred CCCCCCCCCHHHH--HHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 020997 10 ANVKKGPWSPEED--AKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFASIG 87 (318)
Q Consensus 10 p~lkKG~WT~EED--e~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k~G 87 (318)
++.=+.+|.+.+. +.|.+++++.|. ....++.. + +|.-. =-+|..+|.+.|
T Consensus 3 ~~~~~~r~~~~~~Fl~~L~~F~~~rGt--pl~~~P~i-~-gk~lD-----------------------L~~Ly~~V~~~G 55 (121)
T 2rq5_A 3 LGSLGRRWGPNVQRLACIKKHLRSQGI--TMDELPLI-G-GCELD-----------------------LACFFRLINEMG 55 (121)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHHTTC--CCSSCCEE-T-TEECC-----------------------HHHHHHHHHHTT
T ss_pred HHHhhHhcCCcHHHHHHHHHHHHHcCC--CCCCCCcC-C-CEecc-----------------------HHHHHHHHHHcC
Confidence 3455678998875 568888888887 45444432 2 12221 134778888888
Q ss_pred C--------chHHHhhhC--CCC---CHHHHHHHHHHHHHh
Q 020997 88 S--------RWSTIAAQL--PGR---TDNDIKNYWNTKLKK 115 (318)
Q Consensus 88 ~--------kWs~IAk~L--pgR---T~nq~KnRW~~llrk 115 (318)
+ .|.+||..| |.- ....+|.+|..+|-.
T Consensus 56 G~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 56 GMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp SHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 5 799999987 322 245788888766654
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.37 E-value=9.8 Score=30.51 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=29.7
Q ss_pred HHHHHHHHhCC--------chHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 78 IICSLFASIGS--------RWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 78 ~Llelv~k~G~--------kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
.|..+|.+.|+ .|..||..|.--.+..+|..|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 37888888885 799999987433478899999877754
No 104
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=53.66 E-value=17 Score=27.03 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 74 DEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 74 EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
+.++.++.++.-.|-.-.+||+.| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344556666666788999999999 99999999988765544
No 105
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=53.04 E-value=11 Score=31.16 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhCC-chHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 74 DEDRIICSLFASIGS-RWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 74 EED~~Llelv~k~G~-kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+-|..|+++.++.|. .|.+||+.+ |=|...|+.|++.+....+.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 567888888887775 899999999 99999999999998877654
No 106
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=52.95 E-value=24 Score=27.51 Aligned_cols=38 Identities=13% Similarity=0.369 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC--------chHHHhhhCCCCC----HHHHHHHHHHHHHh
Q 020997 78 IICSLFASIGS--------RWSTIAAQLPGRT----DNDIKNYWNTKLKK 115 (318)
Q Consensus 78 ~Llelv~k~G~--------kWs~IAk~LpgRT----~nq~KnRW~~llrk 115 (318)
.|..+|.+.|+ .|.+||..|.--. +..+|..|..+|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47777888885 7999999983322 46778888777654
No 107
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=50.60 E-value=9.8 Score=33.07 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=19.1
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCC
Q 020997 10 ANVKKGPWSPEEDAKLK--------EYIEKNGT 34 (318)
Q Consensus 10 p~lkKG~WT~EEDe~L~--------~lV~kyG~ 34 (318)
|.-..|-||+|+|+.|. ++++|||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 33456999999999875 57788874
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=50.39 E-value=22 Score=28.50 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC--------chHHHhhhCCCCC----HHHHHHHHHHHHHh
Q 020997 78 IICSLFASIGS--------RWSTIAAQLPGRT----DNDIKNYWNTKLKK 115 (318)
Q Consensus 78 ~Llelv~k~G~--------kWs~IAk~LpgRT----~nq~KnRW~~llrk 115 (318)
.|..+|.+.|+ .|.+||..|.--. ...+|..|..+|..
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47788888885 7999999873222 45788888877654
No 109
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=48.36 E-value=37 Score=23.91 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 71 FSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 71 WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
+|+.|-+ ++.++ -.|-...+||..| |-+...|+.+....+++-
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4555544 44555 6788999999999 889999999887666543
No 110
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=48.01 E-value=36 Score=25.65 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 67 NHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 67 kk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
.....|+.|-++|.-++ .|..-.+||..| |-+...|+.+...++++.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44568888877665444 789999999999 999999999998877654
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=47.66 E-value=16 Score=29.73 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=29.7
Q ss_pred HHHHHHHhCC--------chHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 79 ICSLFASIGS--------RWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 79 Llelv~k~G~--------kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
|..+|.+.|+ .|.+||..|.--.+..+|..|..+|-.-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 7777777775 7999999874334899999998887664
No 112
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.65 E-value=29 Score=28.03 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC--------chHHHhhhCCCC--C--HHHHHHHHHHHHHh
Q 020997 78 IICSLFASIGS--------RWSTIAAQLPGR--T--DNDIKNYWNTKLKK 115 (318)
Q Consensus 78 ~Llelv~k~G~--------kWs~IAk~LpgR--T--~nq~KnRW~~llrk 115 (318)
+|..+|.+.|+ .|.+||..|.-- + +..+|..|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47778888885 799999987322 2 35778888777665
No 113
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=46.16 E-value=30 Score=28.00 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC--------chHHHhhhCCCCC----HHHHHHHHHHHHHh
Q 020997 78 IICSLFASIGS--------RWSTIAAQLPGRT----DNDIKNYWNTKLKK 115 (318)
Q Consensus 78 ~Llelv~k~G~--------kWs~IAk~LpgRT----~nq~KnRW~~llrk 115 (318)
.|..+|.+.|+ .|.+||..|.--+ +..+|..|..+|..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47778888885 7999999883222 45778888777655
No 114
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=44.16 E-value=48 Score=25.95 Aligned_cols=37 Identities=16% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHH
Q 020997 70 EFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKN 107 (318)
Q Consensus 70 ~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~Kn 107 (318)
.=++.-+..|..+....|..|..+|..| |=+..+|..
T Consensus 12 ~~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 12 SGTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SCSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred chHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3467777888889999999999999999 777765543
No 115
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=43.57 E-value=31 Score=25.40 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH----hCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 75 EDRIICSLFAS----IGSRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 75 ED~~Llelv~k----~G~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
.++.++.+.-- .|-.+.+||..| |-|...|+.+-...+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34455555544 577999999999 99999999977655544
No 116
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=43.31 E-value=35 Score=27.78 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=24.2
Q ss_pred HhCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 85 SIGSRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 85 k~G~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
-.|-...+||..| |-+...|+++....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3477899999999 89999999987765543
No 117
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=42.46 E-value=38 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 74 DEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 74 EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+-|..|+.+..+.| -.+++||+.+ |=+...|+.+++.+.+..+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44666777777766 4899999999 88999999999998877655
No 118
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=42.22 E-value=44 Score=32.42 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-chHHHhhhCC-CCCHHHHHHHHH
Q 020997 68 HGEFSDDEDRIICSLFASIGS-RWSTIAAQLP-GRTDNDIKNYWN 110 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G~-kWs~IAk~Lp-gRT~nq~KnRW~ 110 (318)
.+.||.-+=..++.++.+||. .-..||..|. |+|...|+....
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~ 167 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAK 167 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHH
Confidence 557999998999999999996 6899999997 999999996543
No 119
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=42.03 E-value=40 Score=23.22 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 69 GEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 69 ~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
..+|+.|-++|.- + ..|....+||..| |-+...|+.+.....++-
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4577777666554 4 6678999999999 889999999887665543
No 120
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=42.01 E-value=38 Score=24.75 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 70 EFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 70 ~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
.+|+.|-++|. ++ ..|-.-.+||+.| |-+...|+.+....+++.
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46777765554 44 6788999999999 899999999887666543
No 121
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=41.99 E-value=42 Score=25.22 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 70 EFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 70 ~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
..|+.|-++|. ++ ..|-.-.+||..| |-+...|+.+....+++.
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46776665554 45 7788999999999 889999999887766554
No 122
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=41.88 E-value=50 Score=22.06 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 76 DRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 76 D~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
+..++.++ ..|-.-.+||..| |-+...|+.+....+++-
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 44556663 5688899999999 899999999888776553
No 123
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=40.23 E-value=1.1e+02 Score=24.57 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 020997 15 GPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNY------LRPNIN----HGEFSDDEDRIICSLFA 84 (318)
Q Consensus 15 G~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~------L~P~ik----k~~WT~EED~~Llelv~ 84 (318)
.+.|.|+-..++.++. -|. ....||+.++ .+... -.||.+. +.+... +...++++.+.|++++.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--s~~~IA~~lg--is~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--RPCDISRQLR--VSHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--CHHHHHHHHT--CCSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC--CHHHHHHHHC--cCHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4689999888888884 464 7788999887 33332 2334433 222111 33478888888888887
Q ss_pred HhC-CchHHHhhhC
Q 020997 85 SIG-SRWSTIAAQL 97 (318)
Q Consensus 85 k~G-~kWs~IAk~L 97 (318)
+.. -.-.+|+..|
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 643 2234455444
No 124
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=38.14 E-value=48 Score=26.80 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC--------chHHHhhhC--CCC---CHHHHHHHHHHHHHh
Q 020997 78 IICSLFASIGS--------RWSTIAAQL--PGR---TDNDIKNYWNTKLKK 115 (318)
Q Consensus 78 ~Llelv~k~G~--------kWs~IAk~L--pgR---T~nq~KnRW~~llrk 115 (318)
.|..+|.+.|+ .|.+||..| +.. ....+|..|..+|..
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 47788888885 799999987 332 256889999887765
No 125
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=37.84 E-value=52 Score=25.75 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 020997 75 EDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLK 114 (318)
Q Consensus 75 ED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llr 114 (318)
.++.++.++.-.|-...+||..| |-+...|+.+....++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34556666667789999999999 8999999988765443
No 126
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=37.52 E-value=36 Score=28.52 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 73 DDEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 73 ~EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
.+-|..|+++..+.| -.|.+||+.+ |-+...|+.|++.+....+.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 355667777777766 4899999999 88999999999988877654
No 127
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=35.37 E-value=46 Score=26.77 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 74 DEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 74 EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+-|..|+.+..+.| -.+++||+.+ |-+...|..|++.+....+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 34566777777766 4899999999 88999999999998877654
No 128
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=35.32 E-value=21 Score=27.35 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=24.9
Q ss_pred HHHHHHHHhCC--------chHHHhhhCC--C-C-CHHHHHHHHHHHHH
Q 020997 78 IICSLFASIGS--------RWSTIAAQLP--G-R-TDNDIKNYWNTKLK 114 (318)
Q Consensus 78 ~Llelv~k~G~--------kWs~IAk~Lp--g-R-T~nq~KnRW~~llr 114 (318)
.|..+|.+.|+ .|.+||..|. . - .+..+|..|..+|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 47777888774 7999999862 2 1 14567777765543
No 129
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=34.94 E-value=49 Score=27.50 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC--------chHHHhhhC--CCC---CHHHHHHHHHHHHHh
Q 020997 78 IICSLFASIGS--------RWSTIAAQL--PGR---TDNDIKNYWNTKLKK 115 (318)
Q Consensus 78 ~Llelv~k~G~--------kWs~IAk~L--pgR---T~nq~KnRW~~llrk 115 (318)
.|..+|.+.|+ .|.+||..| +.. .+..+|..|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 47788888885 799999987 332 256889988877655
No 130
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=34.46 E-value=23 Score=28.72 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=23.9
Q ss_pred hCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 86 IGSRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 86 ~G~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
.|-...+||..| |-+...|+++....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 477899999999 88999999988766544
No 131
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.25 E-value=39 Score=26.95 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCchHHHhhhCCCCCHHHHHH
Q 020997 76 DRIICSLFASIGSRWSTIAAQLPGRTDNDIKN 107 (318)
Q Consensus 76 D~~Llelv~k~G~kWs~IAk~LpgRT~nq~Kn 107 (318)
|..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3457777899999999999999 666665543
No 132
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.14 E-value=48 Score=24.45 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 70 EFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 70 ~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
..|+.|-++| .++ -.|-.-.+||..| |-+...|+.+....+++.
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4566665555 444 5788999999999 899999999887666553
No 133
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.77 E-value=81 Score=19.20 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHH
Q 020997 70 EFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYW 109 (318)
Q Consensus 70 ~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW 109 (318)
..++++-..++.++ .-|....+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666777665 4588899999999 78888776643
No 134
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.58 E-value=29 Score=30.12 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=23.6
Q ss_pred ccccccccccC-CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 020997 53 SCRLRWLNYLR-PNINHGEFSDDEDRIIC--------SLFASIG 87 (318)
Q Consensus 53 QCreRW~n~L~-P~ikk~~WT~EED~~Ll--------elv~k~G 87 (318)
+.-+.|..-.. |.-..|-||.|+|+.|. +|.++||
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 44445554444 45678899999999875 5566665
No 135
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=33.23 E-value=47 Score=26.61 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHH
Q 020997 69 GEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIK 106 (318)
Q Consensus 69 ~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~K 106 (318)
..=|++ .|..+....|..|..+|+.| |=+..+|.
T Consensus 20 ~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 20 SSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp SCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred CCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 344444 45666788999999999998 66665553
No 136
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.14 E-value=49 Score=25.77 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=23.6
Q ss_pred hCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 86 IGSRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 86 ~G~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
.|-...+||+.| |-+...|+++....+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467899999999 89999999988765443
No 137
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.10 E-value=59 Score=27.13 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHh
Q 020997 77 RIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKK 115 (318)
Q Consensus 77 ~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrk 115 (318)
+.++.+.--.|-...+||+.| |-|...|+.+....+++
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 334444444577999999999 99999999887655443
No 138
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=31.92 E-value=45 Score=26.71 Aligned_cols=40 Identities=28% Similarity=0.437 Sum_probs=26.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHH
Q 020997 63 RPNINHGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIK 106 (318)
Q Consensus 63 ~P~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~K 106 (318)
.+.+-...=|++ .|..+....|..|..+|+.| |=++.+|.
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp --CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred CchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 333444445555 35566788999999999998 66666553
No 139
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=31.71 E-value=76 Score=25.13 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccc-----cCCCCCCCC----CCHHHHHHHHHH
Q 020997 12 VKKGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNY-----LRPNINHGE----FSDDEDRIICSL 82 (318)
Q Consensus 12 lkKG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~-----L~P~ikk~~----WT~EED~~Llel 82 (318)
....+.|.|+-..++.++ .-|. ....||+.++ .+...++.-...+ +.+....+. .++++...|+++
T Consensus 28 ~~~~~~s~e~r~~iv~~~-~~G~--s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~ 102 (149)
T 1k78_A 28 VNGRPLPDVVRQRIVELA-HQGV--RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEY 102 (149)
T ss_dssp CTTSCCCHHHHHHHHHHH-HTTC--CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH-HcCC--CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHH
Q ss_pred HHHhCC-chHHHhhhC---------CCCCHHHHHHHHHHHHHhh
Q 020997 83 FASIGS-RWSTIAAQL---------PGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 83 v~k~G~-kWs~IAk~L---------pgRT~nq~KnRW~~llrkk 116 (318)
+.+... .-.+|+..| ..-+...|+...+..+..+
T Consensus 103 ~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~~ 146 (149)
T 1k78_A 103 KRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQP 146 (149)
T ss_dssp HHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC----
T ss_pred HHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcCC
No 140
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=30.22 E-value=97 Score=23.71 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHHhh
Q 020997 68 HGEFSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLKKK 116 (318)
Q Consensus 68 k~~WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llrkk 116 (318)
....|+.|-++|. ++ ..|-.-.+||..| |-+...|+.+....+++.
T Consensus 32 ~~~Lt~re~~Vl~-l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLR-LF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHH-HH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4567888877664 44 3688999999999 889999999888776554
No 141
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=29.61 E-value=74 Score=22.08 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHH
Q 020997 73 DDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKN 107 (318)
Q Consensus 73 ~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~Kn 107 (318)
.-|...|.++...+|.++++.|+.| |=+...+..
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 3477788899999999999999998 545544443
No 142
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.49 E-value=8 Score=31.03 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=27.1
Q ss_pred HHHHHHHHhCC------CCCceeecccccccccCCccccccccccCC
Q 020997 24 KLKEYIEKNGT------GGNWIALPHKAGLMRCGKSCRLRWLNYLRP 64 (318)
Q Consensus 24 ~L~~lV~kyG~------~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P 64 (318)
+|..+|.+.|- ...|..|+..++... +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 56677777762 247999988888443 56667777776654
No 143
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=29.11 E-value=60 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCchHHHhhhCCCCCHHHHHH
Q 020997 77 RIICSLFASIGSRWSTIAAQLPGRTDNDIKN 107 (318)
Q Consensus 77 ~~Llelv~k~G~kWs~IAk~LpgRT~nq~Kn 107 (318)
..|..+....|..|..+|+.| |=+..+|..
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 445566788899999999999 666666543
No 144
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=28.39 E-value=29 Score=27.18 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=27.3
Q ss_pred HHHHHHHHhCC--------chHHHhhhCC--CC---CHHHHHHHHHHHHHh
Q 020997 78 IICSLFASIGS--------RWSTIAAQLP--GR---TDNDIKNYWNTKLKK 115 (318)
Q Consensus 78 ~Llelv~k~G~--------kWs~IAk~Lp--gR---T~nq~KnRW~~llrk 115 (318)
.|..+|.+.|+ .|.+||..|. .. .+..+|..|..+|..
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777888874 7999999873 21 245788888877654
No 145
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=27.83 E-value=95 Score=23.16 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHH
Q 020997 73 DDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNY 108 (318)
Q Consensus 73 ~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnR 108 (318)
.-|...|.+++.++|.+.++.|+.| |=+...+..|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888899999999999999999 6666555443
No 146
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.71 E-value=86 Score=24.58 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 020997 71 FSDDEDRIICSLFASIGSRWSTIAAQLPGRTDNDIKNYWNTKLK 114 (318)
Q Consensus 71 WT~EED~~Llelv~k~G~kWs~IAk~LpgRT~nq~KnRW~~llr 114 (318)
+++.+ +.++.++...|-.-.+||..+ |-|...|+.+....++
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 44444 555666667799999999999 9999999998765543
No 147
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=27.31 E-value=26 Score=28.31 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCC-CCCC-CCCHHHHHHHH--------HHHHHhCC
Q 020997 22 DAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPN-INHG-EFSDDEDRIIC--------SLFASIGS 88 (318)
Q Consensus 22 De~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~-ikk~-~WT~EED~~Ll--------elv~k~G~ 88 (318)
-+.|+.+++++.. +...|.+.+. ++......--.-.+++. .... -|+..+|..|. +|+++||.
T Consensus 14 ~~~i~~lMeef~~--DL~sVTqAlL--K~SGel~at~~fL~~~~r~dg~PiWsr~DD~~Lqk~D~~~R~qL~~KfG~ 86 (111)
T 3k6g_A 14 IKIIRQLMEKFNL--DLSTVTQAFL--KNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFGA 86 (111)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHH--HTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhh--hHHHHHHHHH--HccccHHHHHHHHhCCCcCCCCcceeeccHHHHhcCCHHHHHHHHHHHhh
Confidence 4677888899987 7877777776 55544433222233442 2233 49999998874 67888885
No 148
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=26.39 E-value=71 Score=25.91 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 74 DEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 74 EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+-|..|+.+..+.| -.+++||+.+ |-+...|..|.+.+.+..+.
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 54 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGIV 54 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 34566777777766 4899999999 88999999999988877654
No 149
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=26.34 E-value=77 Score=25.34 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 74 DEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 74 EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+-|..|+++..+.| ..+.+||+.+ |-+...|+.|.+.+.+..+.
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 52 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGII 52 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCc
Confidence 34566777777766 4899999999 88999999999998877654
No 150
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=23.85 E-value=66 Score=25.58 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhhc
Q 020997 74 DEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLIG 119 (318)
Q Consensus 74 EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~~ 119 (318)
+-|..|+.+..+.| -.+++||+.+ |=+...|..+++.+.+..+..
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREI-RIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEE
Confidence 34666777777666 4899999999 889999999999988776653
No 151
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=23.58 E-value=84 Score=26.13 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 74 DEDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 74 EED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+-|..|+.+..+.| -.+++||+.+ |=+...|+.|.+.+.+..+.
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~~l~~L~~~G~I 61 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQL-KKPESTIHFRIKKLQERGVI 61 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44566777777666 4899999999 89999999999998877654
No 152
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=23.27 E-value=30 Score=23.25 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020997 1 MGRAPCC--DKANVKKGPWSPEEDAKLKEYIEKNGT 34 (318)
Q Consensus 1 mgr~~~~--~Kp~lkKG~WT~EEDe~L~~lV~kyG~ 34 (318)
+||+..- .+.....-+.|+||-+.|.+.++..|.
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~g~ 39 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDSGL 39 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHhCC
Confidence 4666544 233334557899999999999999986
No 153
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=22.97 E-value=85 Score=24.52 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhC-CchHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 75 EDRIICSLFASIG-SRWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 75 ED~~Llelv~k~G-~kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
-|..|+.+....| -.+.+||+.+ |-+...|+.+.+.+....+.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i 48 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGII 48 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 3556677776665 4899999999 88999999999988877654
No 154
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=21.38 E-value=61 Score=24.55 Aligned_cols=32 Identities=13% Similarity=0.327 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCchHHHhhhCCCCCHHHHHH
Q 020997 75 EDRIICSLFASIGSRWSTIAAQLPGRTDNDIKN 107 (318)
Q Consensus 75 ED~~Llelv~k~G~kWs~IAk~LpgRT~nq~Kn 107 (318)
-+..+..+....|..|..+|..| |=++.+|..
T Consensus 13 l~~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 13 LQVAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 33456667778899999999999 766666544
No 155
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=21.17 E-value=2.2e+02 Score=28.16 Aligned_cols=56 Identities=18% Similarity=0.354 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCceeecccccccccCCccccccccccCCCCCCCCCCHHHHHHHHHHHHH
Q 020997 14 KGPWSPEEDAKLKEYIEKNGTGGNWIALPHKAGLMRCGKSCRLRWLNYLRPNINHGEFSDDEDRIICSLFAS 85 (318)
Q Consensus 14 KG~WT~EEDe~L~~lV~kyG~~~~W~~Ia~~lg~~Rt~kQCreRW~n~L~P~ikk~~WT~EED~~Llelv~k 85 (318)
..|||.|+...|++...++|.+ ... -| + +.+---|.+| +.+++++|-+.|.+|++.
T Consensus 11 G~PWS~e~R~~l~~f~g~~kmN-tYi-YA---P--KDDpyhr~~W---------Re~Yp~eel~~l~eLv~~ 66 (447)
T 2xsa_A 11 GRDWRRDERATVMDWIAAAGMN-TYI-YG---P--KDDVHVRARW---------RVPYDAAGLARLTELRDA 66 (447)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCC-EEE-EC---C--TTCTTTTTTT---------TSCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCc-eEE-Ec---c--CCChHHHHhh---------cccCCHHHHHHHHHHHHH
Confidence 4599999999999999999872 222 22 2 3333334556 346777777776666654
No 156
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.98 E-value=1.2e+02 Score=22.18 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHhC---C-chHHHhhhCCCCCHHHHHHHHHHHHHhhhh
Q 020997 72 SDDEDRIICSLFASIG---S-RWSTIAAQLPGRTDNDIKNYWNTKLKKKLI 118 (318)
Q Consensus 72 T~EED~~Llelv~k~G---~-kWs~IAk~LpgRT~nq~KnRW~~llrkk~~ 118 (318)
+.+.|..|+++..+.| . .=.+||+.| |-+...|..+-..+.+..+.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~G~I 61 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKGKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 5677788889999988 3 679999999 77778888877776665543
Done!