BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020999
         (318 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 12/122 (9%)

Query: 137 HIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQP---------DSSGGTLT 187
           H++ V+ G D+   + +++++  R + +L  NG +S+VTLRQP            GG +T
Sbjct: 116 HVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVT 175

Query: 188 YEGRFEILSLSGSFMPSDSGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVG 247
             GRFEILSL+G+ +P         +GG+S+ LA   G+VVGG V   L+A++PV ++  
Sbjct: 176 LHGRFEILSLTGTVLPPP---APPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAA 232

Query: 248 SF 249
           SF
Sbjct: 233 SF 234


>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
           GN=glmU PE=3 SV=1
          Length = 621

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 15/110 (13%)

Query: 144 GEDVTMKIISFSQQGP-RAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFM 202
           G+D+  ++  F++Q P +A  +LSA G +S  TLR  D +   L  E R EIL+LSGS  
Sbjct: 478 GQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSE-RLEILALSGSLC 536

Query: 203 PSDSGGTRSRSGGMSVSLASPD--GRVVGGGVA-GLLVAASPVQVVVGSF 249
           P           G+ + LA  D  GR  GG +  G L+  +   V+  S 
Sbjct: 537 PD----------GVHLHLAVADAQGRTWGGHLRPGCLIYTTAEIVLADSL 576


>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
           JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
          Length = 632

 Score = 43.5 bits (101), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 12/84 (14%)

Query: 144 GEDVTMKIISFSQQGP-RAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFM 202
           G+D+  ++   ++Q P +A  +LSA G +S  TLR  D +G  L  E R EIL+LSGS  
Sbjct: 480 GQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-RLEILALSGSLC 538

Query: 203 PSDSGGTRSRSGGMSVSLASPDGR 226
           P           G+ + L   D R
Sbjct: 539 PD----------GVHLHLTVADAR 552


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.127    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,552,068
Number of Sequences: 539616
Number of extensions: 6031306
Number of successful extensions: 58647
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 1125
Number of HSP's that attempted gapping in prelim test: 38467
Number of HSP's gapped (non-prelim): 11543
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)