Query 020999
Match_columns 318
No_of_seqs 269 out of 616
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 99.9 1.2E-26 4.2E-31 197.9 15.3 116 134-259 2-118 (142)
2 2dt4_A Hypothetical protein PH 99.9 1.7E-27 5.9E-32 202.7 9.6 118 135-259 10-130 (143)
3 2hx0_A Putative DNA-binding pr 99.9 1.4E-26 4.9E-31 200.0 15.3 120 130-259 14-134 (154)
4 3htn_A Putative DNA binding pr 99.9 5.4E-27 1.9E-31 201.7 10.8 118 135-259 16-136 (149)
5 2h6l_A Hypothetical protein; N 99.9 1.1E-26 3.7E-31 198.4 9.0 117 135-259 10-129 (146)
6 3hwu_A Putative DNA-binding pr 99.9 3.8E-24 1.3E-28 183.4 11.2 118 135-259 13-133 (147)
7 2ezd_A High mobility group pro 96.4 0.0015 5.3E-08 41.0 2.0 15 101-115 4-18 (26)
8 4dyq_A Gene 1 protein; GP1, oc 65.2 1.9 6.5E-05 35.6 1.0 14 61-74 3-16 (140)
9 1xv2_A ALDC, hypothetical prot 43.1 46 0.0016 30.3 6.4 95 145-244 97-202 (237)
10 4i95_A Putative uncharacterize 33.0 29 0.001 29.7 3.1 35 160-196 36-70 (142)
11 2esy_A LUNG surfactant protein 26.4 27 0.00094 22.7 1.4 12 24-35 1-12 (32)
12 1t3g_A X-linked interleukin-1 24.5 46 0.0016 27.8 2.9 27 141-167 51-77 (159)
13 4gzv_A Hypothetical protein; A 20.4 67 0.0023 27.5 3.1 35 160-196 36-70 (142)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.94 E-value=1.2e-26 Score=197.88 Aligned_cols=116 Identities=25% Similarity=0.384 Sum_probs=102.2
Q ss_pred ceeEEEEecCCCcHHHHHHHHHHc-CCccEEEEEeeceeeEEEEecCCCCCCceeeecceeEEEeeeccccCCCCCCCCC
Q 020999 134 FTPHIITVNTGEDVTMKIISFSQQ-GPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGGTRSR 212 (318)
Q Consensus 134 f~phVIrV~~GEDIve~I~~Faq~-~~raicILSaiGaVsnVTLrq~~~~~~~vt~eG~FEILSLSGsis~~e~g~~~~~ 212 (318)
|++|++||++||||+++|.+||++ +.+++||++++|++++++|++++... +++|+|+|||+||+|||+++
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-------- 72 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-------- 72 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS--------
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC--------
Confidence 789999999999999999999976 55578999999999999999999864 78899999999999999985
Q ss_pred CCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999 213 SGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH 259 (318)
Q Consensus 213 ~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~ 259 (318)
..|||++|+|.||+++||||.+++++..++||+|.+| .+..++|++
T Consensus 73 ~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~-~~~~~~R~~ 118 (142)
T 2p6y_A 73 HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY-PQHHFTREF 118 (142)
T ss_dssp CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC-TTEEEEEEE
T ss_pred CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc-cCCeEEEee
Confidence 2599999999999999999998777789999999995 444566655
No 2
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.94 E-value=1.7e-27 Score=202.71 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=104.0
Q ss_pred eeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCCCCC
Q 020999 135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGGTRS 211 (318)
Q Consensus 135 ~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~~~~ 211 (318)
++|++||++||||+++|++||+++.+..|+++++|++++|+|++++... ..++|+|+|||+||+|||++.++ +
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g----~ 85 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG----E 85 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC----C
Confidence 6999999999999999999998866666667999999999999998764 36889999999999999999755 4
Q ss_pred CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999 212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH 259 (318)
Q Consensus 212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~ 259 (318)
++.|||++|+|.||+|+||||.+++ +. ++||+|.+| .+..++|++
T Consensus 86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~-~~~~~~R~~ 130 (143)
T 2dt4_A 86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQEL-KGEKIERKP 130 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEE-EESCCEEBC
T ss_pred ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEc-CCCeEEEeC
Confidence 8999999999999999999999888 66 999999996 444577766
No 3
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.94 E-value=1.4e-26 Score=200.01 Aligned_cols=120 Identities=21% Similarity=0.370 Sum_probs=106.4
Q ss_pred CCCCceeEEEEecCCCcHHHHHHHHHHc-CCccEEEEEeeceeeEEEEecCCCCCCceeeecceeEEEeeeccccCCCCC
Q 020999 130 VGANFTPHIITVNTGEDVTMKIISFSQQ-GPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSGG 208 (318)
Q Consensus 130 ~g~~f~phVIrV~~GEDIve~I~~Faq~-~~raicILSaiGaVsnVTLrq~~~~~~~vt~eG~FEILSLSGsis~~e~g~ 208 (318)
....+++|++||++||||+++|.+||++ +.+++||++++|++++++|||++... .++|+|+|||+||+|+|+++
T Consensus 14 ~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---- 88 (154)
T 2hx0_A 14 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---- 88 (154)
T ss_dssp SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT----
T ss_pred CCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC----
Confidence 5678999999999999999999999965 66688999999999999999999874 78899999999999999985
Q ss_pred CCCCCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999 209 TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH 259 (318)
Q Consensus 209 ~~~~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~ 259 (318)
..|||++|++.||+|+||||.+++++..++||+|.+| .+..++|++
T Consensus 89 ----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~-~~~~~~R~~ 134 (154)
T 2hx0_A 89 ----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTFSRQP 134 (154)
T ss_dssp ----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC-TTEEEEEEE
T ss_pred ----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc-cCceEEEec
Confidence 2599999999999999999998777778999999985 444566654
No 4
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.94 E-value=5.4e-27 Score=201.69 Aligned_cols=118 Identities=14% Similarity=0.236 Sum_probs=104.4
Q ss_pred eeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCCCCC
Q 020999 135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGGTRS 211 (318)
Q Consensus 135 ~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~~~~ 211 (318)
+.|++||++||||+++|.+||+++.+..|+++++|++++|+|++++... ..++|+|+|||+||+|||++.++ +
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~ 91 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q 91 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence 6999999999999999999998888877777999999999999998753 37899999999999999999755 4
Q ss_pred CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999 212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH 259 (318)
Q Consensus 212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~ 259 (318)
++.|||++|+|.||+|+||||..+ ++..++||+|.++. + .++|++
T Consensus 92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~-~-~~~R~~ 136 (149)
T 3htn_A 92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYS-E-RISRTY 136 (149)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECC-S-CCEEEE
T ss_pred ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcC-C-eeEEee
Confidence 899999999999999999999987 67789999999963 3 455544
No 5
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.93 E-value=1.1e-26 Score=198.44 Aligned_cols=117 Identities=26% Similarity=0.289 Sum_probs=102.1
Q ss_pred eeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCCCCC
Q 020999 135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGGTRS 211 (318)
Q Consensus 135 ~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~~~~ 211 (318)
++|++||++||||+++|.+||+++.+..|+++++|+|++++|++++... ..++++|+|||+||+|||++.++ +
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg----~ 85 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS----K 85 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC----C
Confidence 6999999999999999999998766655556999999999999998765 37889999999999999999655 4
Q ss_pred CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999 212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH 259 (318)
Q Consensus 212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~ 259 (318)
++.|||++|+ .||+|+||||.+++| .|+||+|.+|. +..++|++
T Consensus 86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~-~~~~~R~~ 129 (146)
T 2h6l_A 86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLS-GEAPERAF 129 (146)
T ss_dssp EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECB-SCCCBEEE
T ss_pred ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcC-CCcEEEeE
Confidence 8999999999 999999999999884 69999999964 44566655
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.91 E-value=3.8e-24 Score=183.43 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=102.1
Q ss_pred eeEEEEecCCCcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCC---CceeeecceeEEEeeeccccCCCCCCCC
Q 020999 135 TPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSG---GTLTYEGRFEILSLSGSFMPSDSGGTRS 211 (318)
Q Consensus 135 ~phVIrV~~GEDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~---~~vt~eG~FEILSLSGsis~~e~g~~~~ 211 (318)
+.+++||++||||+++|.+||+++.+..++++++|++++++|++++... ...+++ ++||+||+|||++.++ +
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~ 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence 4699999999999999999999988888888999999999999998754 256788 8999999999998665 5
Q ss_pred CCCceEEEEeCCCCcEEeeecCCcceeecceEEEEEEccCCchhhhcc
Q 020999 212 RSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKH 259 (318)
Q Consensus 212 ~~~HLHVSLA~~dGqViGGHV~g~lIAastVEVVv~sF~~~~~~~~k~ 259 (318)
++.|||++|+|.||+++||||..+.|...|+||+|..+ +..+.|++
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~--~~~~~R~~ 133 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY--PQRLDRFV 133 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE--SSCCBEEE
T ss_pred ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc--CCeEEEEE
Confidence 89999999999999999999998854435999999984 33566554
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.37 E-value=0.0015 Score=40.96 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.7
Q ss_pred CCCCCCCCCCcCCCC
Q 020999 101 EKPRKVKPASSFSKS 115 (318)
Q Consensus 101 ~kr~RGRP~GS~~K~ 115 (318)
.||+||||.|||||.
T Consensus 4 pKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 4 PKRPRGRPKGSKNKG 18 (26)
T ss_dssp CCCCSSCCTTCCCCS
T ss_pred CcCCCCCcCcccccC
Confidence 699999999999984
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=65.18 E-value=1.9 Score=35.64 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=6.1
Q ss_pred cccccCCCCCCCCC
Q 020999 61 LKKKRGRPRKYGPD 74 (318)
Q Consensus 61 ~KkKRGRPRKY~~d 74 (318)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 48999999999875
No 9
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=43.06 E-value=46 Score=30.30 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=54.0
Q ss_pred CcHHHHHHHHHHcCCccEEEEEeeceeeEEEEecCCCCCC-------ceeeecceeEEEeeecc----ccCCCCCCCCCC
Q 020999 145 EDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGG-------TLTYEGRFEILSLSGSF----MPSDSGGTRSRS 213 (318)
Q Consensus 145 EDIve~I~~Faq~~~raicILSaiGaVsnVTLrq~~~~~~-------~vt~eG~FEILSLSGsi----s~~e~g~~~~~~ 213 (318)
+++-+.|.+.. .....|-+---|..+.|+.|-...... .+.-+-.|++=...|++ ++.--.+. -.
T Consensus 97 ~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi--~v 172 (237)
T 1xv2_A 97 DVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV--GS 172 (237)
T ss_dssp HHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT--BC
T ss_pred HHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc--CC
Confidence 34444444443 556678889999999999996542211 11122236666666665 44332221 23
Q ss_pred CceEEEEeCCCCcEEeeecCCcceeecceEE
Q 020999 214 GGMSVSLASPDGRVVGGGVAGLLVAASPVQV 244 (318)
Q Consensus 214 ~HLHVSLA~~dGqViGGHV~g~lIAastVEV 244 (318)
.++|+-+-+.|. -+||||.+-.+-..++++
T Consensus 173 ~G~HlHFisdDr-~~GGHVldf~~~~~~~~~ 202 (237)
T 1xv2_A 173 AGFHIHFADDER-AYGGHVLDFEVDDVVVEI 202 (237)
T ss_dssp SEEEEEEEETTS-SCEEEEEEEEEEEEEEEE
T ss_pred ceeEEEEEcCCC-CCCcceEEEEecceEEEE
Confidence 455555555444 489999985555455555
No 10
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=33.05 E-value=29 Score=29.68 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=29.6
Q ss_pred ccEEEEEeeceeeEEEEecCCCCCCceeeecceeEEE
Q 020999 160 RAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILS 196 (318)
Q Consensus 160 raicILSaiGaVsnVTLrq~~~~~~~vt~eG~FEILS 196 (318)
...=|||.-|...|++++. + .+..++.+|.|||.|
T Consensus 36 n~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 36 NTFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred ccEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence 3567999999999999993 2 457999999999997
No 11
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=26.36 E-value=27 Score=22.71 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=10.0
Q ss_pred CCCccccCcCCC
Q 020999 24 APSEFHIAPRSE 35 (318)
Q Consensus 24 ~p~~~~~a~r~~ 35 (318)
.|.||.++||.+
T Consensus 1 sPPdYSa~P~gr 12 (32)
T 2esy_A 1 SPPDYSAAPRGR 12 (32)
T ss_dssp CCCCCCSCCCSS
T ss_pred CCCccccCcCcc
Confidence 488999999875
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=24.49 E-value=46 Score=27.79 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=24.7
Q ss_pred ecCCCcHHHHHHHHHHcCCccEEEEEe
Q 020999 141 VNTGEDVTMKIISFSQQGPRAICILSA 167 (318)
Q Consensus 141 V~~GEDIve~I~~Faq~~~raicILSa 167 (318)
+.+|++|.+.|.+..++..+.++|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999999999999999985
No 13
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=20.43 E-value=67 Score=27.47 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=28.2
Q ss_pred ccEEEEEeeceeeEEEEecCCCCCCceeeecceeEEE
Q 020999 160 RAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILS 196 (318)
Q Consensus 160 raicILSaiGaVsnVTLrq~~~~~~~vt~eG~FEILS 196 (318)
-..=|||.-|...|+++..- .+.+++..|.|||.|
T Consensus 36 ~~~KIlS~DgtF~N~~m~~~--~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 36 NTFKVLSDDGRIVNFTIIPG--ADAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEEECTTSEEEEEECCTT--SCCEEEEEEEEEEEE
T ss_pred CceEEECCCCcEEEEEEeCC--CCcEEEEeEEEEecC
Confidence 34678999999999998442 246899999999987
Done!