Your job contains 1 sequence.
>021001
MEPSQKVNMPRVDRIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN
VAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLA
GDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLP
NGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVD
YLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVERVGFAISCCMTQKLHESVSAWDDI
VHFQGFLKVFASTFLARY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021001
(318 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504956231 - symbol:AT1G73875 "AT1G73875" speci... 633 6.2e-62 1
TAIR|locus:2832132 - symbol:AT5G11350 "AT5G11350" species... 300 2.1e-45 2
ZFIN|ZDB-GENE-030131-6498 - symbol:angel2 "angel homolog ... 194 1.0e-12 1
MGI|MGI:1196310 - symbol:Angel2 "angel homolog 2 (Drosoph... 193 1.2e-12 1
MGI|MGI:1915987 - symbol:Angel1 "angel homolog 1 (Drosoph... 182 3.4e-11 1
UNIPROTKB|F1NGS9 - symbol:PDE12 "Uncharacterized protein"... 133 1.4e-09 3
FB|FBgn0011725 - symbol:twin "twin" species:7227 "Drosoph... 91 1.1e-08 3
UNIPROTKB|Q6L8Q7 - symbol:PDE12 "2',5'-phosphodiesterase ... 135 1.4e-08 3
MGI|MGI:2443226 - symbol:Pde12 "phosphodiesterase 12" spe... 126 1.9e-08 3
RGD|1310975 - symbol:Pde12 "phosphodiesterase 12" species... 126 1.9e-08 3
UNIPROTKB|F1SGK9 - symbol:PDE12 "Uncharacterized protein"... 133 2.4e-08 3
UNIPROTKB|F1PFN1 - symbol:CCRN4L "Uncharacterized protein... 151 4.0e-08 1
UNIPROTKB|Q08DF7 - symbol:PDE12 "2',5'-phosphodiesterase ... 131 5.1e-08 3
UNIPROTKB|A2VE74 - symbol:CCRN4L "Uncharacterized protein... 151 5.5e-08 1
UNIPROTKB|I3LN01 - symbol:CCRN4L "Uncharacterized protein... 149 9.4e-08 1
MGI|MGI:109382 - symbol:Ccrn4l "CCR4 carbon catabolite re... 149 9.5e-08 1
UNIPROTKB|A6QR51 - symbol:CNOT6 "CNOT6 protein" species:9... 105 1.1e-07 3
UNIPROTKB|E2QS92 - symbol:CNOT6 "Uncharacterized protein"... 105 1.1e-07 3
UNIPROTKB|F1S5Q4 - symbol:CNOT6 "Uncharacterized protein"... 105 1.2e-07 3
FB|FBgn0016762 - symbol:angel "angel" species:7227 "Droso... 146 1.4e-07 1
UNIPROTKB|Q5BJ41 - symbol:cnot6 "CCR4-NOT transcription c... 102 1.4e-07 3
UNIPROTKB|E1C678 - symbol:CNOT6 "Uncharacterized protein"... 102 1.5e-07 3
MGI|MGI:2144529 - symbol:Cnot6 "CCR4-NOT transcription co... 102 1.5e-07 3
RGD|1310783 - symbol:Cnot6 "CCR4-NOT transcription comple... 102 1.5e-07 3
UNIPROTKB|Q9ULM6 - symbol:CNOT6 "CCR4-NOT transcription c... 102 2.4e-07 3
UNIPROTKB|Q9UK39 - symbol:CCRN4L "Nocturnin" species:9606... 145 2.7e-07 1
TAIR|locus:2028611 - symbol:AT1G31500 species:3702 "Arabi... 117 1.7e-06 3
UNIPROTKB|E2R412 - symbol:PDE12 "Uncharacterized protein"... 131 1.9e-06 2
WB|WBGene00000376 - symbol:ccr-4 species:6239 "Caenorhabd... 96 3.6e-06 3
POMBASE|SPCC31H12.08c - symbol:ccr4 "CCR4-Not complex sub... 87 3.9e-06 3
UNIPROTKB|F1NVT2 - symbol:CCRN4L "Uncharacterized protein... 124 5.2e-06 2
ZFIN|ZDB-GENE-071004-97 - symbol:zgc:171797 "zgc:171797" ... 87 9.3e-06 3
UNIPROTKB|E1BE73 - symbol:LOC100849029 "Uncharacterized p... 79 2.6e-05 3
UNIPROTKB|F1RYS2 - symbol:CNOT6L "Uncharacterized protein... 80 5.4e-05 3
ZFIN|ZDB-GENE-060519-25 - symbol:pde12 "phosphodiesterase... 126 6.7e-05 2
RGD|1309128 - symbol:Cnot6l "CCR4-NOT transcription compl... 79 6.8e-05 3
UNIPROTKB|Q96LI5 - symbol:CNOT6L "CCR4-NOT transcription ... 79 6.9e-05 3
MGI|MGI:2443154 - symbol:Cnot6l "CCR4-NOT transcription c... 79 6.9e-05 3
UNIPROTKB|E1C5L3 - symbol:CNOT6L "Uncharacterized protein... 79 0.00032 3
ZFIN|ZDB-GENE-050522-302 - symbol:cnot6l "CCR4-NOT transc... 81 0.00033 3
ASPGD|ASPL0000009331 - symbol:ccr4 species:162425 "Emeric... 87 0.00042 2
RGD|1587344 - symbol:Ccrn4l "CCR4 carbon catabolite repre... 112 0.00050 1
TAIR|locus:2204863 - symbol:AT1G02270 "AT1G02270" species... 114 0.00099 1
>TAIR|locus:504956231 [details] [associations]
symbol:AT1G73875 "AT1G73875" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03372 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AC016662 GO:GO:0004535
EMBL:BT010832 EMBL:BT011303 EMBL:AK230427 IPI:IPI00529493
IPI:IPI00915125 IPI:IPI00915130 RefSeq:NP_683491.2 UniGene:At.45165
ProteinModelPortal:Q0WKY2 SMR:Q0WKY2 EnsemblPlants:AT1G73875.1
GeneID:843724 KEGG:ath:AT1G73875 TAIR:At1g73875
HOGENOM:HOG000241777 OMA:ICKEISR PhylomeDB:Q0WKY2
ProtClustDB:CLSN2915147 Genevestigator:Q0WKY2 Uniprot:Q0WKY2
Length = 454
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 125/251 (49%), Positives = 169/251 (67%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEM------------RNTKSRRVL 78
DGCA+FWK + F LL+ IEF +FG+R NVAQL EM R++ RR++
Sbjct: 182 DGCAIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEMNCEEDPKSKLRVRSSDPRRLV 241
Query: 79 VGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSS 138
VGNIHVL+NP RG++KLGQ+ +A ++++WGNIPV +AGD N TPQSAIY F++S+
Sbjct: 242 VGNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVAIAGDLNSTPQSAIYDFIASA 301
Query: 139 ELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCY 198
+L+ + +DRR +SGQ + + A + L N W+ EE+++ATG +
Sbjct: 302 DLDTQLHDRRQISGQTEVEPKERSFRNHYAFSASASISGSLLNEWSQEELQLATGGQETT 361
Query: 199 LAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLP 258
H LKLNS+Y+ V G+ RTR GEPLAT+YHS+F GTVDY+W+TK LVP RVL+TLP
Sbjct: 362 HVQHQLKLNSAYSGVPGTYRTRDQRGEPLATTYHSRFLGTVDYIWHTKELVPVRVLETLP 421
Query: 259 VDILRRTGGLP 269
D+LRRTGGLP
Sbjct: 422 ADVLRRTGGLP 432
>TAIR|locus:2832132 [details] [associations]
symbol:AT5G11350 "AT5G11350" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535
EMBL:AL360314 EMBL:AY069916 EMBL:AY143977 IPI:IPI00526280
RefSeq:NP_196696.2 UniGene:At.27820 ProteinModelPortal:Q8VYU4
SMR:Q8VYU4 PaxDb:Q8VYU4 PRIDE:Q8VYU4 EnsemblPlants:AT5G11350.1
GeneID:831006 KEGG:ath:AT5G11350 TAIR:At5g11350
HOGENOM:HOG000111455 InParanoid:Q8VYU4 OMA:LYFHIPR PhylomeDB:Q8VYU4
ProtClustDB:CLSN2690149 Genevestigator:Q8VYU4 Uniprot:Q8VYU4
Length = 754
Score = 300 (110.7 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 61/141 (43%), Positives = 91/141 (64%)
Query: 30 VDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEM---RNTK------------S 74
VDGCA+FW++++F+L+ + SI+F + GLR+NVAQ+ E +TK S
Sbjct: 265 VDGCAIFWRSNRFKLVHEESIQFNQLGLRDNVAQICVLETLLTSHTKENETPPPESSAGS 324
Query: 75 RRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKF 134
RV++ NIHVL+NP RG+ KLGQ+ L +A V++ W + P+VL GDFN TP+S +Y F
Sbjct: 325 HRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHAVSKLWDDAPIVLCGDFNCTPKSPLYNF 384
Query: 135 LSSSELNIKSYDRRDLSGQRS 155
+S +L++ R +SGQ S
Sbjct: 385 ISDRKLDLSGLARDKVSGQVS 405
Score = 213 (80.0 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 40/90 (44%), Positives = 55/90 (61%)
Query: 180 PNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTV 239
P+ WT E+ ATG+ + H L+L S+Y+ V+G TR NGEP+ TSYH F GTV
Sbjct: 639 PSSWTPMEIATATGDPERTTVEHALELKSTYSEVEGQANTRDENGEPVVTSYHRCFMGTV 698
Query: 240 DYLWYTKGLVPTRVLDTLPVDILRRTGGLP 269
DY+W ++GL RVL +P ++ T G P
Sbjct: 699 DYIWRSEGLQTVRVLAPIPKQAMQWTPGFP 728
>ZFIN|ZDB-GENE-030131-6498 [details] [associations]
symbol:angel2 "angel homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-030131-6498 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BX649591
EMBL:BC124747 IPI:IPI00506952 RefSeq:NP_001025131.1
UniGene:Dr.105422 ProteinModelPortal:Q5RGT6
Ensembl:ENSDART00000036371 GeneID:562704 KEGG:dre:562704 CTD:90806
InParanoid:A0AUR1 OMA:EQTERES OrthoDB:EOG4255SF NextBio:20884542
ArrayExpress:Q5RGT6 Bgee:Q5RGT6 Uniprot:Q5RGT6
Length = 569
Score = 194 (73.4 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 63/232 (27%), Positives = 106/232 (45%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFEM--RNTKSRRVLVGNIHV 84
DGCA+ +K ++F L+ +E+ G+ R+NV + + + V N H+
Sbjct: 284 DGCAVIFKRERFSLVSCHPVEYFRRGVPLMDRDNVGLIVLLRPIDPHVSLSNICVANTHL 343
Query: 85 LYNPNRGEVKLGQICFLSSRAQIVAEKWGN--IPVVLAGDFNITPQSAIYKFLSSSELNI 142
LYNP RG++KL Q+ L + V++ + PV+L GDFN P S +Y+F+ L+
Sbjct: 344 LYNPRRGDIKLAQLAMLLAEISRVSQLPDSSVCPVLLCGDFNSVPWSPLYRFIKDRRLDY 403
Query: 143 KSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRL-LPNGWTDEEVK-VATGNAQCYLA 200
+SGQ Q + + N D E++ + + +
Sbjct: 404 DGMPIGKVSGQEETPRGQRILTVPIWPRSLGISQQCQYENQTRDSELRDLEQTERESFTE 463
Query: 201 V---HPLKLNSSYAS-VKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGL 248
H L+L S+Y+ +K S G+P T+ HS+ TVDY++Y+ L
Sbjct: 464 ASIEHCLRLTSAYSHHLKES-------GQPEITTCHSRTAITVDYIFYSAAL 508
>MGI|MGI:1196310 [details] [associations]
symbol:Angel2 "angel homolog 2 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1196310
eggNOG:COG5239 GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 CTD:90806
OrthoDB:EOG4255SF EMBL:AB041602 EMBL:AK088834 EMBL:AK135709
EMBL:AK158731 EMBL:AK166619 EMBL:AK169653 EMBL:BC024907
IPI:IPI00230182 IPI:IPI00757120 IPI:IPI00867916 IPI:IPI00867920
IPI:IPI00867925 RefSeq:NP_001185949.1 RefSeq:NP_067396.3
UniGene:Mm.289914 ProteinModelPortal:Q8K1C0 PhosphoSite:Q8K1C0
PaxDb:Q8K1C0 PRIDE:Q8K1C0 Ensembl:ENSMUST00000027947
Ensembl:ENSMUST00000066632 Ensembl:ENSMUST00000110899
Ensembl:ENSMUST00000123384 GeneID:52477 KEGG:mmu:52477
UCSC:uc007ebj.2 UCSC:uc007ebm.2 UCSC:uc007ebn.2 InParanoid:Q8K1C0
OMA:WEYICNH NextBio:309017 Bgee:Q8K1C0 CleanEx:MM_ANGEL2
Genevestigator:Q8K1C0 Uniprot:Q8K1C0
Length = 544
Score = 193 (73.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 47/145 (32%), Positives = 75/145 (51%)
Query: 18 GYYL-YATAHWDNVDGCAMFWKADKFRLLEQTSIEF--KEFGL--RENVAQLSAFEMR-- 70
GY+ Y DGCA+ +K +F LL +EF ++ L R+N+ + + +
Sbjct: 238 GYHCEYKMKTGRKPDGCAICFKHSRFSLLSVNPVEFCRRDIPLLDRDNIGLVLLLQPKIP 297
Query: 71 NTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSR-AQIVAEKWGN-IPVVLAGDFNITPQ 128
S + + N H+LYNP RG++KL Q+ L + A + K G+ P+V+ GDFN P
Sbjct: 298 RAASPSICIANTHLLYNPRRGDIKLTQLAMLLAEIANVTHRKDGSSCPIVMCGDFNSVPG 357
Query: 129 SAIYKFLSSSELNIKSYDRRDLSGQ 153
S +Y F+ +LN + +SGQ
Sbjct: 358 SPLYSFIKEGKLNYEGLAIGKVSGQ 382
Score = 165 (63.1 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 54/202 (26%), Positives = 96/202 (47%)
Query: 58 RENVAQLSAFEMR--NTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSR-AQIVAEKWGN 114
R+N+ + + + S + + N H+LYNP RG++KL Q+ L + A + K G+
Sbjct: 283 RDNIGLVLLLQPKIPRAASPSICIANTHLLYNPRRGDIKLTQLAMLLAEIANVTHRKDGS 342
Query: 115 -IPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQ----RSCHLVQVFEVKKEI- 168
P+V+ GDFN P S +Y F+ +LN + +SGQ R ++ + +
Sbjct: 343 SCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRGQRILSIPIWPPNLG 402
Query: 169 INPFAVMD-RLLPN-GWTDEEVKVATGN-AQCYLAVHPLKLNSSYASVKGSPRTRGI--N 223
I+ V + + +P TD +V A A+ ++ + + + S + +
Sbjct: 403 ISQNCVYEAQQVPKVEKTDSDVTQAQQEKAEVPVSADKVSSHLQHGFSLSSVYSHYVPDT 462
Query: 224 GEPLATSYHSKFFGTVDYLWYT 245
G P T+ HS+ TVDY++YT
Sbjct: 463 GVPEVTTCHSRSAITVDYIFYT 484
>MGI|MGI:1915987 [details] [associations]
symbol:Angel1 "angel homolog 1 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1915987
EMBL:AC102689 EMBL:BC019148 EMBL:AK220354 IPI:IPI00122555
RefSeq:NP_653107.2 UniGene:Mm.63979 ProteinModelPortal:Q8VCU0
PhosphoSite:Q8VCU0 PaxDb:Q8VCU0 PRIDE:Q8VCU0 DNASU:68737
Ensembl:ENSMUST00000021682 GeneID:68737 KEGG:mmu:68737
UCSC:uc011ypj.1 CTD:23357 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InParanoid:Q8VCU0 OMA:LYNFIRD OrthoDB:EOG4229KD
ChiTaRS:ANGEL1 NextBio:327814 Bgee:Q8VCU0 Genevestigator:Q8VCU0
InterPro:IPR005135 SUPFAM:SSF56219 Uniprot:Q8VCU0
Length = 667
Score = 182 (69.1 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 46/135 (34%), Positives = 66/135 (48%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFE------MRNTKSRRVLVG 80
DGCA+ +K +FRLL + +E+ GL R+NV + + + + V
Sbjct: 327 DGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDNVGLVLLLQPLVPEGLGQVSVAPLCVA 386
Query: 81 NIHVLYNPNRGEVKLGQICFLSSRAQIVAE--KWGNIPVVLAGDFNITPQSAIYKFLSSS 138
N HVLYNP RG+VKL Q+ L + VA + P++L GD N P S +Y F+
Sbjct: 387 NTHVLYNPRRGDVKLAQMAILLAEVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFIRDG 446
Query: 139 ELNIKSYDRRDLSGQ 153
EL +SGQ
Sbjct: 447 ELQYNGMPAWKVSGQ 461
>UNIPROTKB|F1NGS9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:AADN02014019 IPI:IPI00572753
Ensembl:ENSGALT00000009018 Uniprot:F1NGS9
Length = 569
Score = 133 (51.9 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNR--GEVKLGQICFLSSRAQIVA-EKWGN 114
R +V Q+S + S+++ V N H+ ++P G ++L QI S + VA + + N
Sbjct: 389 RSSVLQVSVLQSETDPSKKLCVANTHLYWHPKALGGNIRLIQIAVALSHIKYVACDLYPN 448
Query: 115 IPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHL 158
IP++ GDFN TP S Y F+++ + D + C++
Sbjct: 449 IPLIFCGDFNSTPSSGTYGFINTGGIAEDHEDWASNGEEERCNM 492
Score = 58 (25.5 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKEFGLRE 59
+G A F++ DKF LL + I F E L E
Sbjct: 338 EGLATFYRRDKFSLLSRHDITFSEALLSE 366
Score = 57 (25.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 224 GEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLP 258
GEP T+Y F+G +DY++ + + + LP
Sbjct: 505 GEPAYTNYVGGFYGCLDYVFIDQNALEVEQVIPLP 539
>FB|FBgn0011725 [details] [associations]
symbol:twin "twin" species:7227 "Drosophila melanogaster"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 EMBL:AE014297
GO:GO:0005737 InterPro:IPR003591 SMART:SM00369 GO:GO:0048477
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0030014 GO:GO:0000289
KO:K12603 OMA:YMLDNLA UniGene:Dm.33521 GeneID:42880
KEGG:dme:Dmel_CG31137 CTD:42880 FlyBase:FBgn0011725 ChiTaRS:twin
GenomeRNAi:42880 NextBio:831058 EMBL:BT010039 RefSeq:NP_732964.1
SMR:Q8IMX1 STRING:Q8IMX1 EnsemblMetazoa:FBtr0084569 UCSC:CG31137-RC
InParanoid:Q8IMX1 Uniprot:Q8IMX1
Length = 567
Score = 91 (37.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 74 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN------------IPVVLAG 121
S+ +LV H+ ++P +VKL Q LS+ + + ++ + + ++L G
Sbjct: 367 SQPLLVCTAHIHWDPEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKNDSNAVQLLLCG 426
Query: 122 DFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSC 156
DFN P S + +FL +++ D +D+ G +SC
Sbjct: 427 DFNSLPDSGVVEFLGKGRVSMDHLDFKDM-GYKSC 460
Score = 80 (33.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 30 VDGCAMFWKADKFRLLEQTSIEFKEFGL 57
VDGCA+F++A KF L++++ IEF + +
Sbjct: 298 VDGCAIFFRASKFTLIKESLIEFNQLAM 325
Score = 74 (31.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 229 TSYHSKFFGTVDYLWYTK-GLVPTRVLDTLPVDILRRTGGLPC 270
T+Y F G +DY++YTK G+VP +L + D LR + C
Sbjct: 490 TNYTFDFKGIIDYIFYTKTGMVPLGLLGPVSNDWLRENKVVGC 532
>UNIPROTKB|Q6L8Q7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 EMBL:CH471055 GO:GO:0016787 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AB115695
EMBL:AK074423 EMBL:AK300374 EMBL:AL831824 IPI:IPI00174390
IPI:IPI00886797 RefSeq:NP_808881.3 UniGene:Hs.572993
ProteinModelPortal:Q6L8Q7 SMR:Q6L8Q7 IntAct:Q6L8Q7 STRING:Q6L8Q7
PhosphoSite:Q6L8Q7 DMDM:172046137 PaxDb:Q6L8Q7 PRIDE:Q6L8Q7
DNASU:201626 Ensembl:ENST00000311180 GeneID:201626 KEGG:hsa:201626
UCSC:uc003diw.4 GeneCards:GC03P057541 H-InvDB:HIX0003393
HGNC:HGNC:25386 HPA:HPA043171 neXtProt:NX_Q6L8Q7
PharmGKB:PA162399016 InParanoid:Q6L8Q7 PhylomeDB:Q6L8Q7
GenomeRNAi:201626 NextBio:90179 ArrayExpress:Q6L8Q7 Bgee:Q6L8Q7
CleanEx:HS_PDE12 Genevestigator:Q6L8Q7 Uniprot:Q6L8Q7
Length = 609
Score = 135 (52.6 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICF-LSSRAQIVAEKWGNIP 116
R +V Q+S + S+R+ V N H+ ++P G ++L Q+ L+ + + + IP
Sbjct: 431 RSSVLQVSVLQSTKDSSKRICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIP 490
Query: 117 VVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCH--LVQVFEVKKEIINP 171
V+ GDFN TP + +Y F+ + + D + C+ L F++K P
Sbjct: 491 VIFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEERCNMSLTHFFKLKSACGEP 547
Score = 53 (23.7 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKE 54
+G A F++ KF LL Q I F E
Sbjct: 380 EGLATFYRKSKFSLLSQHDISFYE 403
Score = 51 (23.0 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 224 GEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLP 258
GEP T+Y F G +DY++ + + LP
Sbjct: 545 GEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLP 579
>MGI|MGI:2443226 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
Pfam:PF03372 MGI:MGI:2443226 GO:GO:0005739 GO:GO:0016787
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 UniGene:Mm.297768 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AK051991
EMBL:AK082947 EMBL:AK088843 EMBL:AK155088 EMBL:AK161083
EMBL:AK167708 EMBL:BC064450 IPI:IPI00420284 RefSeq:NP_848783.3
UniGene:Mm.290758 ProteinModelPortal:Q3TIU4 SMR:Q3TIU4
STRING:Q3TIU4 PhosphoSite:Q3TIU4 PaxDb:Q3TIU4 PRIDE:Q3TIU4
Ensembl:ENSMUST00000052932 GeneID:211948 KEGG:mmu:211948
UCSC:uc007stb.1 InParanoid:Q3TIU4 ChiTaRS:PDE12 NextBio:373405
Bgee:Q3TIU4 Genevestigator:Q3TIU4 Uniprot:Q3TIU4
Length = 608
Score = 126 (49.4 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQI-CFLSSRAQIVAEKWGNIP 116
R +V Q+S + S+++ V N H+ ++P G ++L Q+ L + + + IP
Sbjct: 430 RSSVLQISVLQSTTDSSKKICVANTHLYWHPKGGYIRLIQMEVALVHIRHVSRDLYPGIP 489
Query: 117 VVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCH--LVQVFEVKKEIINP 171
V+ GDFN TP + +Y F+ S + D + C L F++K P
Sbjct: 490 VIFCGDFNSTPSTGMYHFVISGSIAEDHEDWASNGEEERCSMPLSHCFKLKSACGEP 546
Score = 62 (26.9 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKE 54
+G A F++ KFRLL Q I F+E
Sbjct: 379 EGLATFYRKSKFRLLSQHDISFQE 402
Score = 51 (23.0 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 224 GEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLP 258
GEP T+Y F G +DY++ + + LP
Sbjct: 544 GEPAYTNYVGGFHGCLDYIFIDLNTLEVEQVIPLP 578
>RGD|1310975 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10116 "Rattus
norvegicus" [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] Pfam:PF03372
RGD:1310975 GO:GO:0016787 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
HOGENOM:HOG000006935 HOVERGEN:HBG061027 EMBL:BC079396
IPI:IPI00464947 UniGene:Rn.225980 ProteinModelPortal:Q6AXQ5
PhosphoSite:Q6AXQ5 Ensembl:ENSRNOT00000017800 UCSC:RGD:1310975
OMA:LICLANT ArrayExpress:Q6AXQ5 Genevestigator:Q6AXQ5
Uniprot:Q6AXQ5
Length = 608
Score = 126 (49.4 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICF-LSSRAQIVAEKWGNIP 116
R +V Q+S + S+++ V N H+ ++P G ++L Q+ L + + + IP
Sbjct: 430 RSSVLQISVLQSTTDSSKKICVANTHLYWHPKGGYIRLIQMAAALVHIRHVSCDLYPGIP 489
Query: 117 VVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSC--HLVQVFEVKKEIINP 171
V+ GDFN TP + +Y F+ + + D + C L F++K P
Sbjct: 490 VIFCGDFNSTPSTGMYHFVINGSVPEDHEDWASNGEEERCGMSLTHCFKLKSACGEP 546
Score = 62 (26.9 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKE 54
+G A F++ KFRLL Q I F+E
Sbjct: 379 EGLATFYRKSKFRLLSQHDISFQE 402
Score = 51 (23.0 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 224 GEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLP 258
GEP T+Y F G +DY++ + + LP
Sbjct: 544 GEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLP 578
>UNIPROTKB|F1SGK9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:CU467952 RefSeq:XP_001926497.2
UniGene:Ssc.33948 Ensembl:ENSSSCT00000012546 GeneID:100157651
KEGG:ssc:100157651 Uniprot:F1SGK9
Length = 609
Score = 133 (51.9 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICF-LSSRAQIVAEKWGNIP 116
R +V Q+S + S+++ V N H+ ++P G ++L Q+ L+ + + + IP
Sbjct: 431 RSSVLQVSVLQSTKDSSKKICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIP 490
Query: 117 VVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCH--LVQVFEVKKEIINP 171
VV GDFN TP + +Y F+ + + D + C+ L F++K P
Sbjct: 491 VVFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEERCNMSLTHFFKLKSACGEP 547
Score = 53 (23.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKE 54
+G A F++ KF LL Q I F E
Sbjct: 380 EGLATFYRKSKFSLLSQHDIAFHE 403
Score = 51 (23.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 224 GEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLP 258
GEP T+Y F G +DY++ + + LP
Sbjct: 545 GEPAYTNYVGGFHGCLDYIFIDLNTLEVEQVIPLP 579
>UNIPROTKB|F1PFN1 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0000290 "deadenylation-dependent decapping
of nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:HPEYLVS EMBL:AAEX03011735 Ensembl:ENSCAFT00000005996
Uniprot:F1PFN1
Length = 365
Score = 151 (58.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 26 HWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN-VAQLSAFEMRNTKSRRVLVGNIHV 84
H + DGCA+F+ ++F+L+ +I L+ N VA + E + + SR+ + H+
Sbjct: 163 HNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIVQTLECKES-SRQFCIAVTHL 221
Query: 85 LYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKS 144
+ Q C L Q + + IP+++ GDFN P +YK +SS LN+ S
Sbjct: 222 KARTGWERFRSAQGCDLLQNLQNITQG-AKIPLIVCGDFNAEPTEEVYKHFASSSLNLNS 280
Query: 145 -YDRRDLSGQ 153
Y GQ
Sbjct: 281 AYKLLSADGQ 290
>UNIPROTKB|Q08DF7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] Pfam:PF03372 GO:GO:0005739
GO:GO:0016787 eggNOG:COG5239 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BC123772 IPI:IPI00717658
RefSeq:NP_001069601.1 UniGene:Bt.42120 ProteinModelPortal:Q08DF7
Ensembl:ENSBTAT00000020675 GeneID:538860 KEGG:bta:538860 CTD:201626
HOGENOM:HOG000006935 HOVERGEN:HBG061027 InParanoid:Q08DF7
OMA:FRWYKEA OrthoDB:EOG4JDH6H NextBio:20877627 Uniprot:Q08DF7
Length = 609
Score = 131 (51.2 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICF-LSSRAQIVAEKWGNIP 116
R +V Q+S + S+++ V N H+ ++P G ++L Q+ L+ + + + IP
Sbjct: 431 RSSVVQVSVLQSTKDSSKKICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIP 490
Query: 117 VVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCH--LVQVFEVKKEIINP 171
V+ GDFN TP + +Y F+ + + D + C+ L F++K P
Sbjct: 491 VIFCGDFNSTPSTGMYHFVINGSIAEDHEDWTSNGEEERCNMSLSHFFKLKSACGEP 547
Score = 53 (23.7 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKE 54
+G A F++ KF LL Q I F E
Sbjct: 380 EGLATFYRKSKFSLLSQHDIAFHE 403
Score = 50 (22.7 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 224 GEPLATSYHSKFFGTVDYLW 243
GEP T+Y F G +DY++
Sbjct: 545 GEPAYTNYVGGFHGCLDYIF 564
>UNIPROTKB|A2VE74 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
CTD:25819 HOGENOM:HOG000237357 HOVERGEN:HBG006512 OMA:HPEYLVS
OrthoDB:EOG4NZTTH EMBL:DAAA02044446 EMBL:BC133608 IPI:IPI00693881
RefSeq:NP_001075923.1 UniGene:Bt.27843 STRING:A2VE74
Ensembl:ENSBTAT00000007876 GeneID:540641 KEGG:bta:540641
InParanoid:A2VE74 NextBio:20878745 Uniprot:A2VE74
Length = 427
Score = 151 (58.2 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 38/130 (29%), Positives = 61/130 (46%)
Query: 26 HWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN-VAQLSAFEMRNTKSRRVLVGNIHV 84
H + DGCA+F+ ++F+L+ +I L+ N VA E + + SR+ + H+
Sbjct: 229 HNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKES-SRQFCIAVTHL 287
Query: 85 LYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKS 144
+ Q C L Q + + IP+++ GDFN P +YK +SS LN+ S
Sbjct: 288 KARTGWERFRSAQGCDLLQNLQTITQG-AKIPLIVCGDFNAEPTEEVYKHFASSSLNLNS 346
Query: 145 -YDRRDLSGQ 153
Y GQ
Sbjct: 347 AYKLLSADGQ 356
>UNIPROTKB|I3LN01 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
CTD:25819 OMA:HPEYLVS EMBL:FP102607 RefSeq:XP_003129235.1
UniGene:Ssc.9136 Ensembl:ENSSSCT00000031350 GeneID:100513746
KEGG:ssc:100513746 Uniprot:I3LN01
Length = 427
Score = 149 (57.5 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 38/130 (29%), Positives = 61/130 (46%)
Query: 26 HWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN-VAQLSAFEMRNTKSRRVLVGNIHV 84
H + DGCA+F+ ++F+L+ +I L+ N VA E R ++ R+ + H+
Sbjct: 229 HNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECRASR-RQFCIAVTHL 287
Query: 85 LYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKS 144
+ Q C L Q + + IP+++ GDFN P +YK +SS LN+ S
Sbjct: 288 KARTGWERFRSAQGCDLLQNLQNITQG-AKIPLIICGDFNAEPTEEVYKHFASSSLNLSS 346
Query: 145 -YDRRDLSGQ 153
Y GQ
Sbjct: 347 AYKLLSADGQ 356
>MGI|MGI:109382 [details] [associations]
symbol:Ccrn4l "CCR4 carbon catabolite repression 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI] [GO:0048511 "rhythmic process" evidence=IEA]
Pfam:PF03372 MGI:MGI:109382 GO:GO:0048511 GO:GO:0000932
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0033962 CleanEx:MM_CCR4 GO:GO:0000290
CTD:25819 HOGENOM:HOG000237357 HOVERGEN:HBG006512 OMA:HPEYLVS
OrthoDB:EOG4NZTTH ChiTaRS:CCRN4L EMBL:U70139 EMBL:AF183960
EMBL:AF199491 EMBL:AK087790 IPI:IPI00133829 IPI:IPI00662222
RefSeq:NP_033964.1 UniGene:Mm.86541 ProteinModelPortal:O35710
SMR:O35710 STRING:O35710 PhosphoSite:O35710 PaxDb:O35710
PRIDE:O35710 Ensembl:ENSMUST00000023849 Ensembl:ENSMUST00000167780
GeneID:12457 KEGG:mmu:12457 UCSC:uc008pdn.2 InParanoid:O35710
BRENDA:3.1.13.4 NextBio:281308 Bgee:O35710 Genevestigator:O35710
GermOnline:ENSMUSG00000023087 Uniprot:O35710
Length = 429
Score = 149 (57.5 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 38/130 (29%), Positives = 61/130 (46%)
Query: 26 HWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN-VAQLSAFEMRNTKSRRVLVGNIHV 84
H + DGCA+F+ ++F+L+ T+I L+ N VA E + + R+ + H+
Sbjct: 227 HNNGPDGCALFFLQNRFKLISSTNIRLTAMTLKTNQVAIAQTLECKES-GRQFCIAVTHL 285
Query: 85 LYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKS 144
+ Q C L Q + + IP+++ GDFN P +YK +SS LN+ S
Sbjct: 286 KARTGWERFRSAQGCDLLQNLQNITQG-AKIPLIVCGDFNAEPTEEVYKHFASSSLNLNS 344
Query: 145 -YDRRDLSGQ 153
Y GQ
Sbjct: 345 AYKLLSPDGQ 354
>UNIPROTKB|A6QR51 [details] [associations]
symbol:CNOT6 "CNOT6 protein" species:9913 "Bos taurus"
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 eggNOG:COG4886
InterPro:IPR003591 SMART:SM00369 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472
EMBL:DAAA02018941 EMBL:DAAA02018942 EMBL:DAAA02018943 EMBL:BC150116
IPI:IPI00711873 RefSeq:NP_001094631.1 UniGene:Bt.37548
STRING:A6QR51 Ensembl:ENSBTAT00000023088 GeneID:534707
KEGG:bta:534707 InParanoid:A6QR51 NextBio:20876510 Uniprot:A6QR51
Length = 557
Score = 105 (42.0 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 57 LRENVAQLSAFEMR-NTKSRRVLVGNIHVLYNPNRGEVKLGQ-ICFLSSRAQIVAE---- 110
LR+ + ++S+ + T+ + +LV N H+ ++P +VKL Q + FLS I+ +
Sbjct: 334 LRKELIEISSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRS 393
Query: 111 -------KWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
++G IP+VL D N P S + ++LS+ + D ++L
Sbjct: 394 LQSSVLGEFGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKEL 440
Score = 80 (33.2 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 279 HVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
Score = 48 (22.0 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 229 TSYHSKFFGTVDYLWYTK 246
T+Y F G +DY++Y+K
Sbjct: 480 TNYTFDFKGIIDYIFYSK 497
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 207 NSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLV 249
N S G+ R +G L ++Y S +Y + KG++
Sbjct: 448 NFSCNGKNGTTNGRITHGFKLKSAYESGLMPYTNYTFDFKGII 490
>UNIPROTKB|E2QS92 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 InterPro:IPR003591 SMART:SM00369
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AAEX03007668 RefSeq:XP_538584.2 Ensembl:ENSCAFT00000000745
GeneID:481463 Uniprot:E2QS92
Length = 557
Score = 105 (42.0 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 57 LRENVAQLSAFEMR-NTKSRRVLVGNIHVLYNPNRGEVKLGQ-ICFLSSRAQIVAE---- 110
LR+ + ++S+ + T+ + +LV N H+ ++P +VKL Q + FLS I+ +
Sbjct: 334 LRKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRN 393
Query: 111 -------KWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
++G IP+VL D N P S + ++LS+ + D ++L
Sbjct: 394 LQSSVLGEFGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKEL 440
Score = 80 (33.2 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 279 HVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
Score = 48 (22.0 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 229 TSYHSKFFGTVDYLWYTK 246
T+Y F G +DY++Y+K
Sbjct: 480 TNYTFDFKGIIDYIFYSK 497
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 207 NSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLV 249
N S G+ R +G L ++Y S +Y + KG++
Sbjct: 448 NFSCNGKNGTTNGRITHGFKLKSAYESGLMPYTNYTFDFKGII 490
>UNIPROTKB|F1S5Q4 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 InterPro:IPR025875 Pfam:PF12799
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:ENNANED EMBL:CU929694 Ensembl:ENSSSCT00000015302 Uniprot:F1S5Q4
Length = 566
Score = 105 (42.0 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 57 LRENVAQLSAFEMR-NTKSRRVLVGNIHVLYNPNRGEVKLGQ-ICFLSSRAQIVAE---- 110
LR+ + ++S+ + T+ + +LV N H+ ++P +VKL Q + FLS I+ +
Sbjct: 343 LRKELIEISSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRS 402
Query: 111 -------KWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
++G IP+VL D N P S + ++LS+ + D ++L
Sbjct: 403 LQSSVLGEFGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKEL 449
Score = 80 (33.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 288 HVDGCAIFFKTEKFTLVQKHTVEFNQLAM 316
Score = 48 (22.0 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 229 TSYHSKFFGTVDYLWYTK 246
T+Y F G +DY++Y+K
Sbjct: 489 TNYTFDFKGIIDYIFYSK 506
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 207 NSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLV 249
N S G+ R +G L ++Y S +Y + KG++
Sbjct: 457 NFSCNGKNGTTNGRITHGFKLKSAYESGLMPYTNYTFDFKGII 499
>FB|FBgn0016762 [details] [associations]
symbol:angel "angel" species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03372 EMBL:AE013599 GO:GO:0007275
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 EMBL:X85743 EMBL:AY058301 PIR:S71925
RefSeq:NP_477204.1 UniGene:Dm.4319 ProteinModelPortal:Q24239
DIP:DIP-17505N IntAct:Q24239 MINT:MINT-777493 STRING:Q24239
EnsemblMetazoa:FBtr0072083 GeneID:37748 KEGG:dme:Dmel_CG12273
UCSC:CG12273-RA CTD:37748 FlyBase:FBgn0016762 InParanoid:Q24239
OMA:DVRCAQV OrthoDB:EOG4FQZ73 PhylomeDB:Q24239 GenomeRNAi:37748
NextBio:805224 Bgee:Q24239 GermOnline:CG12273 Uniprot:Q24239
Length = 354
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 36/131 (27%), Positives = 65/131 (49%)
Query: 20 YLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGL----RENVAQLSAFEMRNTKSR 75
Y+Y DGCA+ + + KF LL+ ++E + + R+NVA + F + + +
Sbjct: 144 YVYKKKTGCRTDGCAIVYDSSKFELLDHQAVELYDQAVALLNRDNVALFARFRFKKQQEQ 203
Query: 76 R--VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYK 133
+ +V H+L+N R +V+ Q+ + Q + + P+VL GDFN P S+ +
Sbjct: 204 QKEFVVATTHLLFNTKRSDVRCAQVERILEELQSFST---DTPIVLTGDFNSLPDSSPIE 260
Query: 134 FLSSSELNIKS 144
FL ++ S
Sbjct: 261 FLVGKNGDVDS 271
>UNIPROTKB|Q5BJ41 [details] [associations]
symbol:cnot6 "CCR4-NOT transcription complex subunit 6"
species:8355 "Xenopus laevis" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOVERGEN:HBG052641 CTD:57472
GO:GO:2000327 EMBL:BC091632 RefSeq:NP_001184194.1 UniGene:Xl.52932
ProteinModelPortal:Q5BJ41 GeneID:100505426 KEGG:xla:100505426
Uniprot:Q5BJ41
Length = 552
Score = 102 (41.0 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 57 LRENVAQLSAFEMR-NTKSRRVLVGNIHVLYNPNRGEVKLGQ-ICFLSSRAQIVAE---- 110
LR+ + ++S+ + T+ + +LV N H+ ++P +VKL Q + FLS I+ +
Sbjct: 329 LRKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRS 388
Query: 111 -------KWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
+ G IP+VL D N P S + ++LS+ + D ++L
Sbjct: 389 LKSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKEL 435
Score = 80 (33.2 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 274 HVDGCAIFFKTEKFTLVQKHTVEFNQLAM 302
Score = 50 (22.7 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 223 NGEPLATSYHSKFFGTVDYLWYTK 246
NG T+Y F G +DY++Y+K
Sbjct: 469 NGLMPYTNYTFDFKGIIDYIFYSK 492
>UNIPROTKB|E1C678 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY CTD:57472 EMBL:AADN02028573
EMBL:AADN02028574 EMBL:AADN02028575 IPI:IPI00583544
RefSeq:XP_414612.3 UniGene:Gga.56102 Ensembl:ENSGALT00000009699
GeneID:416293 KEGG:gga:416293 Uniprot:E1C678
Length = 557
Score = 102 (41.0 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 57 LRENVAQLSAFEMR-NTKSRRVLVGNIHVLYNPNRGEVKLGQ-ICFLSSRAQI------- 107
LR+ + ++S+ + + + VLV N H+ ++P+ +VKL Q + FLS I
Sbjct: 334 LRKELIEMSSGKPHLGMEKQLVLVANAHMHWDPDYSDVKLVQTMMFLSEVKNIIDKASRS 393
Query: 108 ----VAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
VA + G IP+VL D N P S + ++LS+ + D ++L
Sbjct: 394 LKPGVAGELGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKEL 440
Score = 80 (33.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 279 HVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
Score = 50 (22.7 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 223 NGEPLATSYHSKFFGTVDYLWYTK 246
NG T+Y F G +DY++Y+K
Sbjct: 474 NGLMPYTNYTFDFKGIIDYIFYSK 497
>MGI|MGI:2144529 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 MGI:MGI:2144529
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
KO:K12603 OMA:YATSDTY HOGENOM:HOG000294222 CleanEx:MM_CCR4
HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327
EMBL:AY043269 EMBL:AK129307 EMBL:AL606479 EMBL:BC049984
EMBL:BC057190 EMBL:BC062950 IPI:IPI00322541 IPI:IPI00410965
IPI:IPI00410966 RefSeq:NP_997649.1 UniGene:Mm.247113
UniGene:Mm.431753 ProteinModelPortal:Q8K3P5 SMR:Q8K3P5
STRING:Q8K3P5 PhosphoSite:Q8K3P5 PRIDE:Q8K3P5 DNASU:104625
Ensembl:ENSMUST00000020624 Ensembl:ENSMUST00000145353 GeneID:104625
KEGG:mmu:104625 UCSC:uc007iqy.1 UCSC:uc007iqz.1 UCSC:uc007ira.1
InParanoid:Q8K3P5 NextBio:357192 Bgee:Q8K3P5 CleanEx:MM_CNOT6
Genevestigator:Q8K3P5 GermOnline:ENSMUSG00000020362 Uniprot:Q8K3P5
Length = 557
Score = 102 (41.0 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 57 LRENVAQLSAFEMR-NTKSRRVLVGNIHVLYNPNRGEVKLGQ-ICFLSSRAQIVAE---- 110
LR+ + ++S+ + T+ + +LV N H+ ++P +VKL Q + FLS I+ +
Sbjct: 334 LRKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRS 393
Query: 111 -------KWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
+ G IP+VL D N P S + ++LS+ + D ++L
Sbjct: 394 LKSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKEL 440
Score = 80 (33.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 279 HVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
Score = 50 (22.7 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 223 NGEPLATSYHSKFFGTVDYLWYTK 246
NG T+Y F G +DY++Y+K
Sbjct: 474 NGLMPYTNYTFDFKGIIDYIFYSK 497
>RGD|1310783 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO;ISS]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1310783
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327 EMBL:BC079308
IPI:IPI00464576 RefSeq:NP_001013878.1 UniGene:Rn.93562
ProteinModelPortal:Q6AXU9 SMR:Q6AXU9 STRING:Q6AXU9
PhosphoSite:Q6AXU9 PRIDE:Q6AXU9 GeneID:287249 KEGG:rno:287249
UCSC:RGD:1310783 NextBio:625750 ArrayExpress:Q6AXU9
Genevestigator:Q6AXU9 GermOnline:ENSRNOG00000002803 Uniprot:Q6AXU9
Length = 557
Score = 102 (41.0 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 57 LRENVAQLSAFEMR-NTKSRRVLVGNIHVLYNPNRGEVKLGQ-ICFLSSRAQIVAE---- 110
LR+ + ++S+ + T+ + +LV N H+ ++P +VKL Q + FLS I+ +
Sbjct: 334 LRKELIEMSSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRS 393
Query: 111 -------KWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
+ G IP+VL D N P S + ++LS+ + D ++L
Sbjct: 394 LKSSVLGECGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKEL 440
Score = 80 (33.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 279 HVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
Score = 50 (22.7 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 223 NGEPLATSYHSKFFGTVDYLWYTK 246
NG T+Y F G +DY++Y+K
Sbjct: 474 NGLMPYTNYTFDFKGIIDYIFYSK 497
>UNIPROTKB|Q9ULM6 [details] [associations]
symbol:CNOT6 "CCR4-NOT transcription complex subunit 6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369
GO:GO:0006351 GO:GO:0003723 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:CH471165 GO:GO:0004535 GO:GO:0000289 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 CleanEx:HS_CCR4 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 EMBL:AB033020 EMBL:BC152469 IPI:IPI00008205
RefSeq:NP_056270.2 UniGene:Hs.608380 ProteinModelPortal:Q9ULM6
SMR:Q9ULM6 DIP:DIP-46838N IntAct:Q9ULM6 STRING:Q9ULM6
PhosphoSite:Q9ULM6 DMDM:46396033 PRIDE:Q9ULM6 DNASU:57472
Ensembl:ENST00000261951 Ensembl:ENST00000393356 GeneID:57472
KEGG:hsa:57472 UCSC:uc003mlx.3 CTD:57472 GeneCards:GC05P179921
HGNC:HGNC:14099 HPA:HPA044568 MIM:608951 neXtProt:NX_Q9ULM6
PharmGKB:PA26677 InParanoid:Q9ULM6 PhylomeDB:Q9ULM6
GenomeRNAi:57472 NextBio:63703 ArrayExpress:Q9ULM6 Bgee:Q9ULM6
CleanEx:HS_CNOT6 Genevestigator:Q9ULM6 GermOnline:ENSG00000113300
GO:GO:2000327 Uniprot:Q9ULM6
Length = 557
Score = 102 (41.0 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQ-ICFLSSRAQIVAE------ 110
+E++ S T+ + +LV N H+ ++P +VKL Q + FLS I+ +
Sbjct: 336 KESIEMPSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLK 395
Query: 111 -----KWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
++G IP+VL D N P S + ++LS+ + D ++L
Sbjct: 396 SSVLGEFGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKEL 440
Score = 80 (33.2 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 279 HVDGCAIFFKTEKFTLVQKHTVEFNQLAM 307
Score = 48 (22.0 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 229 TSYHSKFFGTVDYLWYTK 246
T+Y F G +DY++Y+K
Sbjct: 480 TNYTFDFKGIIDYIFYSK 497
Score = 38 (18.4 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 207 NSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLV 249
N S G+ R +G L ++Y S +Y + KG++
Sbjct: 448 NFSCHGKNGTTNGRITHGFKLQSAYESGLMPYTNYTFDFKGII 490
>UNIPROTKB|Q9UK39 [details] [associations]
symbol:CCRN4L "Nocturnin" species:9606 "Homo sapiens"
[GO:0048511 "rhythmic process" evidence=IEA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03372 GO:GO:0005654 GO:GO:0003700
GO:GO:0048511 GO:GO:0006366 EMBL:CH471056 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 Reactome:REACT_24941
CleanEx:HS_CCR4 EMBL:AF183961 EMBL:BC113494 EMBL:BC113500
EMBL:AF199492 EMBL:AF199493 EMBL:AF199494 IPI:IPI00015890
RefSeq:NP_036250.2 UniGene:Hs.639842 UniGene:Hs.656047
ProteinModelPortal:Q9UK39 SMR:Q9UK39 IntAct:Q9UK39 STRING:Q9UK39
PhosphoSite:Q9UK39 DMDM:212276446 PaxDb:Q9UK39 PRIDE:Q9UK39
Ensembl:ENST00000280614 GeneID:25819 KEGG:hsa:25819 UCSC:uc003ihl.3
CTD:25819 GeneCards:GC04P139936 H-InvDB:HIX0004503 HGNC:HGNC:14254
MIM:608468 neXtProt:NX_Q9UK39 PharmGKB:PA26176 HOGENOM:HOG000237357
HOVERGEN:HBG006512 InParanoid:Q9UK39 OMA:HPEYLVS OrthoDB:EOG4NZTTH
PhylomeDB:Q9UK39 ChiTaRS:CCRN4L GenomeRNAi:25819 NextBio:47067
Bgee:Q9UK39 CleanEx:HS_CCRN4L Genevestigator:Q9UK39
GermOnline:ENSG00000151014 Uniprot:Q9UK39
Length = 431
Score = 145 (56.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 37/130 (28%), Positives = 60/130 (46%)
Query: 26 HWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN-VAQLSAFEMRNTKSRRVLVGNIHV 84
H + DGCA+F+ ++F+L+ +I L+ N VA E + + R+ + H+
Sbjct: 229 HNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKES-GRQFCIAVTHL 287
Query: 85 LYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKS 144
+ Q C L Q + + IP+++ GDFN P +YK +SS LN+ S
Sbjct: 288 KARTGWERFRSAQGCDLLQNLQNITQG-AKIPLIVCGDFNAEPTEEVYKHFASSSLNLNS 346
Query: 145 -YDRRDLSGQ 153
Y GQ
Sbjct: 347 AYKLLSADGQ 356
>TAIR|locus:2028611 [details] [associations]
symbol:AT1G31500 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016787 "hydrolase activity" evidence=ISS]
Pfam:PF03372 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 GO:GO:0006351
EMBL:AC074360 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535 KO:K12603
EMBL:AC027135 EMBL:BT005746 EMBL:BT006109 EMBL:BX813786
EMBL:BX815872 EMBL:BX814736 EMBL:AK228566 IPI:IPI00516607
IPI:IPI00534982 IPI:IPI00548899 IPI:IPI00847028 IPI:IPI00915129
IPI:IPI00915138 RefSeq:NP_001077640.1 RefSeq:NP_174435.2
RefSeq:NP_973943.2 RefSeq:NP_973944.1 UniGene:At.40328
ProteinModelPortal:A8MS41 SMR:A8MS41 PaxDb:A8MS41 PRIDE:A8MS41
EnsemblPlants:AT1G31500.4 GeneID:840040 KEGG:ath:AT1G31500
TAIR:At1g31500 HOGENOM:HOG000265770 InParanoid:Q3ED43 OMA:CLKWKAR
PhylomeDB:A8MS41 ProtClustDB:CLSN2680732 Genevestigator:A8MS41
Uniprot:A8MS41
Length = 417
Score = 117 (46.2 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSR-AQ---IVAEKWG 113
R+ V ++AF + V+V N H+ ++P +VKL Q +L SR AQ ++++++
Sbjct: 239 RDCVGIMAAFRINKPFQHIVIVANTHLYWDPELADVKLAQAKYLLSRLAQFKTLISDEFE 298
Query: 114 NIP-VVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKK 166
P ++LAGDFN P +Y +L S N K + + + L V+EV +
Sbjct: 299 CTPSLLLAGDFNSIPGDMVYSYLVSG--NAKPTETIE-EEEAPVPLSSVYEVTR 349
Score = 54 (24.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 18 GYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKE 54
G Y+ T DGCA+F+K L+ + IE+ +
Sbjct: 162 GIYIQRTGQRKR-DGCAIFYKPSCAELVTKERIEYND 197
Score = 43 (20.2 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 224 GEPLATSYHSKFFGTVDYLWYTKG--LVPTRVLDTLPVDILRRTGGLP 269
GEP T+ F T+DY++ + + P +L D G LP
Sbjct: 350 GEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDSPDVVGFLP 397
>UNIPROTKB|E2R412 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
Pfam:PF03372 GO:GO:0005739 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 OMA:FRWYKEA
EMBL:AAEX03012165 RefSeq:XP_541830.2 Ensembl:ENSCAFT00000012438
GeneID:484714 KEGG:cfa:484714 Uniprot:E2R412
Length = 616
Score = 131 (51.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICF-LSSRAQIVAEKWGNIP 116
R +V Q+S + S+R+ V N H+ ++P G ++L Q+ L+ + + + IP
Sbjct: 438 RSSVLQVSVLQSTKDSSKRLCVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIP 497
Query: 117 VVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCH--LVQVFEVKKEIINP 171
V+ GDFN TP + +Y F+ + + D + C+ L F++K P
Sbjct: 498 VIFCGDFNSTPSTGMYHFVVNGSIPEDHEDWASNGEEERCNMSLSHFFKLKSACGEP 554
Score = 51 (23.0 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 224 GEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLP 258
GEP T+Y F G +DY++ + + LP
Sbjct: 552 GEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLP 586
>WB|WBGene00000376 [details] [associations]
symbol:ccr-4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
Pfam:PF03372 GO:GO:0008340 GO:GO:0009792 GO:GO:0040011
GO:GO:0040018 GO:GO:0000003 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0040002 KO:K12603 EMBL:Z68753 RefSeq:NP_001129877.1
UniGene:Cel.6023 ProteinModelPortal:B3GWC3 SMR:B3GWC3 STRING:B3GWC3
PaxDb:B3GWC3 EnsemblMetazoa:ZC518.3d GeneID:178184
KEGG:cel:CELE_ZC518.3 CTD:178184 WormBase:ZC518.3d
InParanoid:B3GWC3 NextBio:900070 ArrayExpress:B3GWC3 Uniprot:B3GWC3
Length = 677
Score = 96 (38.9 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 71 NTKSRRVLVGNIHVLYNPNRGEVKLGQICFLS---SRA-QIVAEKWG----NIPVVLAGD 122
N ++V H+ ++P +VKL Q L+ SR + V++K+ +PV++ GD
Sbjct: 456 NVVGNPLVVATAHIHWDPEFCDVKLVQSMMLTHEVSRVLEEVSKKYQITQQQVPVLICGD 515
Query: 123 FNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSC 156
FN P S ++++LS ++ + D + SC
Sbjct: 516 FNSLPDSGVFEYLSKGQITRRHMDLKSFRDD-SC 548
Score = 82 (33.9 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 30 VDGCAMFWKADKFRLLEQTSIEFKEFGLRE 59
VDGCA+FWK DKF + +Q EF +++
Sbjct: 382 VDGCAIFWKVDKFDMDKQYLFEFSSVAMKK 411
Score = 44 (20.5 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 202 HPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYT 245
HPL+L+S+ IN P T+Y F G +DY++ T
Sbjct: 563 HPLRLDSAC----------DINSIPF-TNYTLDFKGMIDYIFAT 595
>POMBASE|SPCC31H12.08c [details] [associations]
symbol:ccr4 "CCR4-Not complex subunit Ccr4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] InterPro:IPR001611
PROSITE:PS51450 PomBase:SPCC31H12.08c Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 eggNOG:COG4886 GO:GO:0003723 GO:GO:0090305
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 GO:GO:0030015 KO:K12603
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 PIR:T41296
RefSeq:NP_587901.1 ProteinModelPortal:O74874 STRING:O74874
EnsemblFungi:SPCC31H12.08c.1 GeneID:2538913 KEGG:spo:SPCC31H12.08c
NextBio:20800091 GO:GO:0006354 Uniprot:O74874
Length = 690
Score = 87 (35.7 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 45 LEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSR 104
++ TS + ++N++ ++ E + SR ++V N H+ ++P +VK+ Q+ L
Sbjct: 460 IKLTSNMYNRVMTKDNISVITLLENKENGSR-LIVANCHIHWDPQFRDVKVIQVAMLMDE 518
Query: 105 AQIVAEKWGNIPVVLAGD 122
VA K+ N+P + D
Sbjct: 519 IAQVATKFRNMPSKIPSD 536
Score = 70 (29.7 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 115 IPVVLAGDFNITPQSAIYKFLSSSELN 141
IP+++ GDFN S +Y FLSS ++
Sbjct: 551 IPILICGDFNSVQGSGVYDFLSSGSIS 577
Score = 69 (29.3 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 30 VDGCAMFWKADKFRLLEQTSIEFKEF-GLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNP 88
VDGCA F+K K+ + E+ IE+ + LR +L++ M N + + I +L N
Sbjct: 427 VDGCATFFKTSKYVMHEKMVIEYNQAPSLRRQDIKLTS-NMYNRVMTKDNISVITLLENK 485
Query: 89 NRG 91
G
Sbjct: 486 ENG 488
Score = 66 (28.3 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 206 LNSSYASVKGSPRTRGIN-----GEPLA---TSYHSKFFGTVDYLWYT-KGLVPTRVLDT 256
+N+ Y + R+ N GE A T+Y F G +D++WYT L T +L
Sbjct: 584 MNNDYGEYTVNGRSHAFNLKSAYGESEALSFTNYTPGFKGAIDHIWYTGNSLEVTGLLKG 643
Query: 257 LPVDILRRTGGLP 269
+ D L G P
Sbjct: 644 VDKDYLSGVVGFP 656
>UNIPROTKB|F1NVT2 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:HPEYLVS EMBL:AADN02016273 IPI:IPI00577593
Ensembl:ENSGALT00000015887 ArrayExpress:F1NVT2 Uniprot:F1NVT2
Length = 371
Score = 124 (48.7 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 33/125 (26%), Positives = 55/125 (44%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKEFGLREN-VAQLSAFEMRNTKSRRVLVGNIHVLYNPN 89
DGCA+F+ ++F L+ +I L+ N VA + T + + H+
Sbjct: 174 DGCALFFLKERFELINSANIRLTAMKLKTNQVAIAQTLKCSET-GKLFCIAVTHLKARTG 232
Query: 90 RGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKS-YDRR 148
+ Q C L + + + IP+++ GDFN P +Y+ S+S LN+ S Y
Sbjct: 233 WERFRSAQGCDLLQNLKSITQG-AKIPLIICGDFNAEPTEEVYREFSNSSLNLNSAYKLL 291
Query: 149 DLSGQ 153
GQ
Sbjct: 292 SPDGQ 296
Score = 48 (22.0 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 204 LKLNSSYASVKGSPRTRGINGEPLATSYHSKFFG----TVDYLWYTK 246
L LNS+Y + SP + EP T++ + G T+DY+WY++
Sbjct: 282 LNLNSAYKLL--SPDGQS---EPPYTTWKIRPSGECRHTLDYIWYSQ 323
>ZFIN|ZDB-GENE-071004-97 [details] [associations]
symbol:zgc:171797 "zgc:171797" species:7955 "Danio
rerio" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 ZFIN:ZDB-GENE-071004-97
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 OMA:ENVYANR EMBL:AL935334
IPI:IPI00495563 Ensembl:ENSDART00000030357 Bgee:F1QA17
Uniprot:F1QA17
Length = 558
Score = 87 (35.7 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 29/108 (26%), Positives = 58/108 (53%)
Query: 57 LRENVAQLSAFEMRNTKSRRVL-VGNIHVLYNPNRGEVKLGQ-ICFLS---------SRA 105
L++ + ++S+ + + +++L V N H+ ++P +VKL Q + FLS SR+
Sbjct: 334 LKKELIEVSSGKSIHAMEKQLLLVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRS 393
Query: 106 ---QIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDL 150
V+ + +IP+VL D N P S + ++LS+ ++ D ++L
Sbjct: 394 LKHSSVSGETSSIPLVLCADLNSLPDSGVVEYLSTGGVDCTHKDFKEL 441
Score = 79 (32.9 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF ++++ ++EF + +
Sbjct: 279 HVDGCAIFYKTEKFNVVQKHTVEFNQLAM 307
Score = 50 (22.7 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 223 NGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTL-PVD 260
NG T+Y F G +DY++Y++ + VL L P+D
Sbjct: 475 NGLMPYTNYTFDFRGVIDYIFYSRPQL--NVLGVLGPLD 511
>UNIPROTKB|E1BE73 [details] [associations]
symbol:LOC100849029 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:DAAA02018160 IPI:IPI00694976
Ensembl:ENSBTAT00000005694 Uniprot:E1BE73
Length = 422
Score = 79 (32.9 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 146 HVDGCAIFFKTEKFTLVQKHTVEFNQVAM 174
Score = 78 (32.5 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 77 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN-----------IPVVLAGDFNI 125
++V N H+ ++P +VKL Q S + + EK + IP+VL D N
Sbjct: 221 LIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS 280
Query: 126 TPQSAIYKFLSSSELNIKSYDRRDL 150
P S + ++LS+ + D ++L
Sbjct: 281 LPDSGVVEYLSNGGVADNHKDFKEL 305
Score = 51 (23.0 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 229 TSYHSKFFGTVDYLWYTKGLVPTRVLDTL-PVD 260
T+Y F G +DY++Y+K VL L P+D
Sbjct: 345 TNYTFDFKGVIDYIFYSK--THMNVLGVLGPLD 375
>UNIPROTKB|F1RYS2 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005737 GO:GO:0008284
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 OMA:YMLDNLA GO:GO:0061157 EMBL:CU914220
Ensembl:ENSSSCT00000009846 Uniprot:F1RYS2
Length = 557
Score = 80 (33.2 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 15/52 (28%), Positives = 33/52 (63%)
Query: 13 DRIEPGYYLYATA-------HWDNVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
D+++ G++L ++ +VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 258 DKLKDGFFLQSSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAM 309
Score = 78 (32.5 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 77 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN-----------IPVVLAGDFNI 125
++V N H+ ++P +VKL Q S + + EK + IP+VL D N
Sbjct: 356 LIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS 415
Query: 126 TPQSAIYKFLSSSELNIKSYDRRDL 150
P S + ++LS+ + D ++L
Sbjct: 416 LPDSGVVEYLSNGGVADNHKDFKEL 440
Score = 51 (23.0 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 229 TSYHSKFFGTVDYLWYTKGLVPTRVLDTL-PVD 260
T+Y F G +DY++Y+K VL L P+D
Sbjct: 480 TNYTFDFKGVIDYIFYSK--THMNVLGVLGPLD 510
>ZFIN|ZDB-GENE-060519-25 [details] [associations]
symbol:pde12 "phosphodiesterase 12" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-060519-25 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:FP067440 EMBL:CU638695
IPI:IPI00882873 Ensembl:ENSDART00000067608 ArrayExpress:F1RBC5
Bgee:F1RBC5 Uniprot:F1RBC5
Length = 591
Score = 126 (49.4 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 58 RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICF-LSSRAQIVAEKWGNIP 116
R Q++ + SR + VGN H+ + P G V+L QI L Q+V EK
Sbjct: 409 RSTTLQVTVLQSLCDPSRILCVGNTHLYWRPEGGNVRLVQIAVALEHMKQVVTEKHPGAR 468
Query: 117 VVLAGDFNITPQSAIYKFLS 136
++ +GDFN TP S +++ LS
Sbjct: 469 LIFSGDFNSTPSSGLFQLLS 488
Score = 41 (19.5 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 31 DGCAMFWKADKFRLLEQTSIEFKE 54
+G A +++ K +L+EQ + E
Sbjct: 358 EGLATYFRRSKLKLVEQYDVMLSE 381
>RGD|1309128 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit 6-like"
species:10116 "Rattus norvegicus" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IEA;ISO] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA;ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0061157 "mRNA destabilization" evidence=IEA;ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1309128
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
GO:GO:0061157 IPI:IPI00363898 Ensembl:ENSRNOT00000002843
Uniprot:F1M642
Length = 553
Score = 79 (32.9 bits), Expect = 6.8e-05, Sum P(3) = 6.8e-05
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 277 HVDGCAIFFKTEKFTLVQKHTVEFNQVAM 305
Score = 78 (32.5 bits), Expect = 6.8e-05, Sum P(3) = 6.8e-05
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 77 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN-----------IPVVLAGDFNI 125
++V N H+ ++P +VKL Q S + + EK + IP+VL D N
Sbjct: 352 LIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS 411
Query: 126 TPQSAIYKFLSSSELNIKSYDRRDL 150
P S + ++LS+ + D ++L
Sbjct: 412 LPDSGVVEYLSNGGVADNHKDFKEL 436
Score = 51 (23.0 bits), Expect = 6.8e-05, Sum P(3) = 6.8e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 229 TSYHSKFFGTVDYLWYTKGLVPTRVLDTL-PVD 260
T+Y F G +DY++Y+K VL L P+D
Sbjct: 476 TNYTFDFKGVIDYIFYSK--THMNVLGVLGPLD 506
>UNIPROTKB|Q96LI5 [details] [associations]
symbol:CNOT6L "CCR4-NOT transcription complex subunit
6-like" species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005829 GO:GO:0046872
GO:GO:0008284 eggNOG:COG4886 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 EMBL:AK058188 EMBL:AC104701
EMBL:AL133112 IPI:IPI00164061 IPI:IPI00878418 PIR:T42705
RefSeq:NP_653172.2 UniGene:Hs.592519 PDB:3NGN PDB:3NGO PDB:3NGQ
PDBsum:3NGN PDBsum:3NGO PDBsum:3NGQ ProteinModelPortal:Q96LI5
SMR:Q96LI5 DIP:DIP-46837N IntAct:Q96LI5 STRING:Q96LI5
PhosphoSite:Q96LI5 DMDM:166216089 PRIDE:Q96LI5 DNASU:246175
Ensembl:ENST00000264903 Ensembl:ENST00000504123 GeneID:246175
KEGG:hsa:246175 UCSC:uc003hks.3 UCSC:uc003hkt.1
GeneCards:GC04M078634 HGNC:HGNC:18042 HPA:HPA042688
neXtProt:NX_Q96LI5 PharmGKB:PA38480 InParanoid:Q96LI5
EvolutionaryTrace:Q96LI5 GenomeRNAi:246175 NextBio:91870
ArrayExpress:Q96LI5 Bgee:Q96LI5 CleanEx:HS_CNOT6L
Genevestigator:Q96LI5 GO:GO:0061157 Uniprot:Q96LI5
Length = 555
Score = 79 (32.9 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 279 HVDGCAIFFKTEKFTLVQKHTVEFNQVAM 307
Score = 78 (32.5 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 77 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN-----------IPVVLAGDFNI 125
++V N H+ ++P +VKL Q S + + EK + IP+VL D N
Sbjct: 354 LIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS 413
Query: 126 TPQSAIYKFLSSSELNIKSYDRRDL 150
P S + ++LS+ + D ++L
Sbjct: 414 LPDSGVVEYLSNGGVADNHKDFKEL 438
Score = 51 (23.0 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 229 TSYHSKFFGTVDYLWYTKGLVPTRVLDTL-PVD 260
T+Y F G +DY++Y+K VL L P+D
Sbjct: 478 TNYTFDFKGVIDYIFYSK--THMNVLGVLGPLD 508
>MGI|MGI:2443154 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit
6-like" species:10090 "Mus musculus" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0061157 "mRNA
destabilization" evidence=IMP] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 MGI:MGI:2443154 GO:GO:0005737 GO:GO:0046872
GO:GO:0008284 GO:GO:0006397 eggNOG:COG4886
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 OMA:YMLDNLA GO:GO:0061157
EMBL:AK030112 EMBL:AK151728 EMBL:AC129600 EMBL:AC149285
EMBL:BC018506 IPI:IPI00124574 IPI:IPI00828817 IPI:IPI00881655
RefSeq:NP_659159.1 RefSeq:NP_849185.2 UniGene:Mm.28374
UniGene:Mm.384746 HSSP:P24014 ProteinModelPortal:Q8VEG6 SMR:Q8VEG6
DIP:DIP-46842N IntAct:Q8VEG6 STRING:Q8VEG6 PhosphoSite:Q8VEG6
PRIDE:Q8VEG6 Ensembl:ENSMUST00000113005 Ensembl:ENSMUST00000122003
Ensembl:ENSMUST00000155901 GeneID:231464 KEGG:mmu:231464
UCSC:uc008yfd.1 UCSC:uc008yfe.1 UCSC:uc008yfg.1 InParanoid:Q8VEG6
NextBio:380566 Bgee:Q8VEG6 CleanEx:MM_CNOT6L Genevestigator:Q8VEG6
Uniprot:Q8VEG6
Length = 555
Score = 79 (32.9 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 279 HVDGCAIFFKTEKFTLVQKHTVEFNQVAM 307
Score = 78 (32.5 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 77 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN-----------IPVVLAGDFNI 125
++V N H+ ++P +VKL Q S + + EK + IP+VL D N
Sbjct: 354 LIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS 413
Query: 126 TPQSAIYKFLSSSELNIKSYDRRDL 150
P S + ++LS+ + D ++L
Sbjct: 414 LPDSGVVEYLSNGGVADNHKDFKEL 438
Score = 51 (23.0 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 229 TSYHSKFFGTVDYLWYTKGLVPTRVLDTL-PVD 260
T+Y F G +DY++Y+K VL L P+D
Sbjct: 478 TNYTFDFKGVIDYIFYSK--THMNVLGVLGPLD 508
>UNIPROTKB|E1C5L3 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:AADN02016133 IPI:IPI00594662
Ensembl:ENSGALT00000016820 NextBio:20825132 Uniprot:E1C5L3
Length = 549
Score = 79 (32.9 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGCA+F+K +KF L+++ ++EF + +
Sbjct: 274 HVDGCAIFFKTEKFSLVQKHTVEFNQVAM 302
Score = 76 (31.8 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 77 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN-----------IPVVLAGDFNI 125
++V N H+ ++P +VKL Q S + + EK + IP+VL D N
Sbjct: 348 LIVANAHMHWDPEYSDVKLIQTMMFVSELKNILEKASSRPGSPTADPNSIPLVLCADLNS 407
Query: 126 TPQSAIYKFLSSSELNIKSYDRRDL 150
P S + ++LS+ + D ++L
Sbjct: 408 LPDSGVVEYLSNGIVADNHKDFKEL 432
Score = 46 (21.3 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 229 TSYHSKFFGTVDYLWYTKGLVPTRVLDTL-PVD 260
T+Y F G +DY++Y+ VL L P+D
Sbjct: 472 TNYTFDFKGVIDYIFYSN--THMNVLGVLGPLD 502
>ZFIN|ZDB-GENE-050522-302 [details] [associations]
symbol:cnot6l "CCR4-NOT transcription complex,
subunit 6-like" species:7955 "Danio rerio" [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
ZFIN:ZDB-GENE-050522-302 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
eggNOG:COG4886 GO:GO:0004527 GO:GO:0090305 InterPro:IPR025875
Pfam:PF12799 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 EMBL:BX640512
EMBL:BC095634 IPI:IPI00487742 RefSeq:NP_001018474.1
UniGene:Dr.76067 ProteinModelPortal:A2BHJ4 STRING:A2BHJ4
Ensembl:ENSDART00000076807 GeneID:553665 KEGG:dre:553665 CTD:246175
HOVERGEN:HBG052641 OMA:YMLDNLA OrthoDB:EOG43TZV7 NextBio:20880398
Bgee:A2BHJ4 Uniprot:A2BHJ4
Length = 559
Score = 81 (33.6 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 77 VLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEK-------------WGNIPVVLAGDF 123
+LV N H+ ++P +VKL Q S + +AE+ +IP+VL D
Sbjct: 347 LLVANAHMHWDPEYSDVKLIQTMMFLSELKSIAERASGSINSSSPTSETSSIPIVLCADL 406
Query: 124 NITPQSAIYKFLSSSELNIKSYDRRDL 150
N P S + ++LS+ + D ++L
Sbjct: 407 NSLPDSGVVEYLSNGGVAENHKDFKEL 433
Score = 75 (31.5 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 29 NVDGCAMFWKADKFRLLEQTSIEFKEFGL 57
+VDGC +F+K +KF L+++ ++EF + +
Sbjct: 274 HVDGCGVFFKTEKFALVQKHTVEFNQVAM 302
Score = 45 (20.9 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 229 TSYHSKFFGTVDYLWYTK 246
T+Y F G +DY++++K
Sbjct: 473 TNYTYDFKGVIDYIFFSK 490
>ASPGD|ASPL0000009331 [details] [associations]
symbol:ccr4 species:162425 "Emericella nidulans"
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886
GO:GO:0006351 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000061
GO:GO:0090305 InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0004535 KO:K12603 RefSeq:XP_661206.1
ProteinModelPortal:Q5B778 STRING:Q5B778
EnsemblFungi:CADANIAT00005142 GeneID:2873021 KEGG:ani:AN3602.2
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 Uniprot:Q5B778
Length = 675
Score = 87 (35.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 31/105 (29%), Positives = 44/105 (41%)
Query: 170 NPFAVMDRLLPNGWTDEE----VKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGE 225
+P + L+ NG EE K GN HP KL S+Y ++ GE
Sbjct: 547 SPGSAAYNLIANGGLIEEHPDLEKRMYGNLSKVGMTHPFKLKSAYGAI----------GE 596
Query: 226 PLATSYHSKFFGTVDYLWYTKGLVPTR-VLDTLPVDILRRTGGLP 269
T+Y F +DY+WY+ V +L + D L+R G P
Sbjct: 597 LSFTNYTPDFKDILDYIWYSSNTVHVSGLLGEVDKDYLQRVPGFP 641
Score = 77 (32.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 28/103 (27%), Positives = 43/103 (41%)
Query: 30 VDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQ----------------LSAFEMRNTK 73
VDGCA F+K KF LL++ I F + +R A+ + F
Sbjct: 400 VDGCATFFKGSKFILLDKQVINFGQTAVRRPDAKGQDDIYNRLWQKDHIAVIVFLENRQT 459
Query: 74 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 116
R ++ N H+ ++P +VKL Q L +EK+ P
Sbjct: 460 GSRFIIVNAHLYWDPAFKDVKLIQTAILMEEITKHSEKYAKWP 502
>RGD|1587344 [details] [associations]
symbol:Ccrn4l "CCR4 carbon catabolite repression 4-like (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IEA;ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA;ISO] [GO:0048511 "rhythmic process"
evidence=IEA] Pfam:PF03372 RGD:1587344 GO:GO:0048511 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 HOGENOM:HOG000237357
HOVERGEN:HBG006512 OrthoDB:EOG4NZTTH EMBL:AF199495 IPI:IPI00890357
UniGene:Rn.15040 ProteinModelPortal:Q9ET55 STRING:Q9ET55
PRIDE:Q9ET55 UCSC:RGD:1587344 InParanoid:Q9ET55
Genevestigator:Q9ET55 GermOnline:ENSRNOG00000010799 Uniprot:Q9ET55
Length = 253
Score = 112 (44.5 bits), Expect = 0.00050, P = 0.00050
Identities = 29/103 (28%), Positives = 47/103 (45%)
Query: 26 HWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN-VAQLSAFEMRNTKSRRVLVGNIHV 84
H + DGCA+F+ +F+L+ T+I L+ N VA E + + R+ + H+
Sbjct: 153 HNNGPDGCALFFLQSRFKLINSTNIRLTAMTLKTNQVAIAQTLECKES-GRQFCIAVTHL 211
Query: 85 LYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITP 127
+ Q C L Q + E IP+++ GDFN P
Sbjct: 212 KARTGWERFRSAQGCDLLQSLQNITEG-AKIPLIVCGDFNAEP 253
>TAIR|locus:2204863 [details] [associations]
symbol:AT1G02270 "AT1G02270" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005509 "calcium ion binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] InterPro:IPR002048 InterPro:IPR011992 PROSITE:PS50222
Pfam:PF03372 Prosite:PS00018 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009409 GO:GO:0005509
Gene3D:1.10.238.10 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U89959
EMBL:AY052704 EMBL:AY063716 IPI:IPI00522847 RefSeq:NP_563646.1
UniGene:At.10716 ProteinModelPortal:O81916 SMR:O81916
EnsemblPlants:AT1G02270.1 GeneID:839381 KEGG:ath:AT1G02270
TAIR:At1g02270 eggNOG:NOG134127 HOGENOM:HOG000006305
InParanoid:O81916 OMA:VESNISC PhylomeDB:O81916
ProtClustDB:CLSN2916945 Genevestigator:O81916 Uniprot:O81916
Length = 484
Score = 114 (45.2 bits), Expect = 0.00099, P = 0.00099
Identities = 41/153 (26%), Positives = 72/153 (47%)
Query: 7 VNMPRVDRIEPGYYLYATAHWDNV-DGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLS 65
VNM GY +Y A ++ DG D F+++ + F +FG + VAQL
Sbjct: 134 VNMYHHQLSSSGYTIYQLARTNSRGDGLLTAIHKDHFKVVNYRELLFNDFG--DRVAQLL 191
Query: 66 ------AFEMRNTKS--RRVLVGNIHVLY--NPNRGEVKLGQICFLSSRAQIVAE--KWG 113
F + + + V++ N H+L+ + + V+L Q+ + + + K
Sbjct: 192 HVKTVIPFPLNGKQDVQQEVIIVNTHLLFPHDSSLSIVRLHQVYKILEYLEAYQKENKLN 251
Query: 114 NIPVVLAGDFNITPQSAIYKFLSSSELNIKSYD 146
++P++L GD+N + + +YKFL S I SYD
Sbjct: 252 HMPIILCGDWNGSKRGHVYKFLRSQGF-ISSYD 283
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 318 318 0.00083 116 3 11 22 0.50 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 621 (66 KB)
Total size of DFA: 235 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.08u 0.08s 26.16t Elapsed: 00:00:01
Total cpu time: 26.09u 0.08s 26.17t Elapsed: 00:00:01
Start: Fri May 10 20:33:08 2013 End: Fri May 10 20:33:09 2013