Query 021001
Match_columns 318
No_of_seqs 218 out of 1642
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:49:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 9.9E-52 2.1E-56 413.2 20.5 247 2-288 297-602 (606)
2 KOG2338 Transcriptional effect 100.0 1.3E-42 2.9E-47 332.8 17.4 281 3-287 162-494 (495)
3 KOG0620 Glucose-repressible al 100.0 1E-34 2.2E-39 276.5 8.2 247 3-295 63-360 (361)
4 COG5239 CCR4 mRNA deadenylase, 100.0 3E-34 6.5E-39 265.6 9.8 241 3-295 73-374 (378)
5 COG3568 ElsH Metal-dependent h 99.8 3.6E-20 7.9E-25 168.0 11.4 122 4-137 42-187 (259)
6 PRK11756 exonuclease III; Prov 99.8 2.4E-19 5.3E-24 165.4 11.4 118 2-130 25-159 (268)
7 TIGR03395 sphingomy sphingomye 99.7 1.9E-17 4.2E-22 154.3 13.5 129 2-137 35-200 (283)
8 PRK05421 hypothetical protein; 99.7 1.7E-17 3.7E-22 153.1 13.0 117 2-128 68-196 (263)
9 PTZ00297 pantothenate kinase; 99.7 1.9E-16 4.2E-21 173.4 15.5 133 1-137 40-226 (1452)
10 KOG3873 Sphingomyelinase famil 99.7 8.3E-16 1.8E-20 143.0 13.5 232 2-294 40-300 (422)
11 TIGR00195 exoDNase_III exodeox 99.7 8.7E-16 1.9E-20 140.5 13.0 114 2-129 25-153 (254)
12 PRK13911 exodeoxyribonuclease 99.6 5.4E-14 1.2E-18 128.9 13.5 113 2-128 26-150 (250)
13 COG0708 XthA Exonuclease III [ 99.5 3.3E-14 7.2E-19 129.5 11.5 112 3-129 26-155 (261)
14 TIGR00633 xth exodeoxyribonucl 99.5 6.5E-14 1.4E-18 127.5 12.7 115 2-129 26-156 (255)
15 PRK15251 cytolethal distending 99.4 2.1E-12 4.5E-17 118.4 12.4 103 17-136 101-206 (271)
16 smart00476 DNaseIc deoxyribonu 99.3 1.5E-11 3.3E-16 114.0 11.0 122 2-128 47-190 (276)
17 KOG2756 Predicted Mg2+-depende 99.3 6.2E-12 1.4E-16 113.3 7.9 116 3-125 130-254 (349)
18 COG3021 Uncharacterized protei 99.2 9.9E-11 2.1E-15 108.6 11.3 122 3-137 114-245 (309)
19 PF03372 Exo_endo_phos: Endonu 99.2 1.2E-10 2.7E-15 102.7 11.1 123 3-131 29-173 (249)
20 COG2374 Predicted extracellula 98.2 6.3E-06 1.4E-10 84.0 8.9 111 27-138 566-698 (798)
21 smart00128 IPPc Inositol polyp 97.8 5.7E-05 1.2E-09 71.5 8.3 108 28-138 90-209 (310)
22 PLN03191 Type I inositol-1,4,5 97.5 0.0026 5.7E-08 64.4 14.1 94 29-126 373-481 (621)
23 COG5239 CCR4 mRNA deadenylase, 97.5 0.00019 4.2E-09 67.9 5.7 88 59-148 121-209 (378)
24 PF14529 Exo_endo_phos_2: Endo 97.4 0.00018 3.8E-09 57.3 4.4 42 228-281 78-119 (119)
25 KOG0566 Inositol-1,4,5-triphos 97.4 0.0014 3E-08 68.7 11.1 108 29-140 624-743 (1080)
26 KOG1294 Apurinic/apyrimidinic 96.7 0.031 6.7E-07 53.4 12.8 62 206-285 265-334 (335)
27 PTZ00312 inositol-1,4,5-tripho 96.2 0.017 3.7E-07 53.7 7.6 76 56-136 64-151 (356)
28 COG5411 Phosphatidylinositol 5 95.0 0.12 2.5E-06 50.6 8.4 52 74-125 164-217 (460)
29 KOG1976 Inositol polyphosphate 94.1 0.095 2.1E-06 48.9 5.3 75 61-140 158-244 (391)
30 KOG0565 Inositol polyphosphate 71.4 11 0.00025 31.1 5.7 57 74-130 58-124 (145)
31 COG1407 Predicted ICC-like pho 48.3 19 0.00042 32.7 3.3 51 74-124 20-74 (235)
32 TIGR00024 SbcD_rel_arch putati 44.6 43 0.00093 30.1 5.0 52 74-125 15-70 (225)
33 PTZ00235 DNA polymerase epsilo 42.1 45 0.00097 31.4 4.7 46 76-128 30-78 (291)
34 cd08165 MPP_MPPE1 human MPPE1 36.5 51 0.0011 27.6 4.0 49 77-125 1-50 (156)
35 KOG1387 Glycosyltransferase [C 34.0 39 0.00084 32.8 3.0 50 76-130 43-93 (465)
36 PF08477 Miro: Miro-like prote 29.7 91 0.002 23.8 4.2 27 95-121 89-115 (119)
37 cd07391 MPP_PF1019 Pyrococcus 29.5 40 0.00087 28.5 2.2 48 78-125 2-53 (172)
38 PHA02546 47 endonuclease subun 26.8 1.5E+02 0.0033 28.2 5.9 50 76-126 3-52 (340)
39 cd07393 MPP_DR1119 Deinococcus 25.7 1E+02 0.0022 27.5 4.2 48 77-126 2-54 (232)
40 cd00840 MPP_Mre11_N Mre11 nucl 24.5 1.4E+02 0.003 25.7 4.8 51 76-127 2-55 (223)
41 cd07380 MPP_CWF19_N Schizosacc 21.3 1.1E+02 0.0025 25.6 3.4 29 99-129 11-42 (150)
42 PF05970 PIF1: PIF1-like helic 20.0 70 0.0015 30.8 2.1 17 111-127 138-154 (364)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=9.9e-52 Score=413.22 Aligned_cols=247 Identities=29% Similarity=0.443 Sum_probs=198.9
Q ss_pred CccccccHHHHhhc---------C--CCCc-EEEEecC-------CCceeEEEEEeCCceeeeeeeEEeccCCc------
Q 021001 2 EPSQKVNMPRVDRI---------E--PGYY-LYATAHW-------DNVDGCAMFWKADKFRLLEQTSIEFKEFG------ 56 (318)
Q Consensus 2 ~~~~ivclqEv~~~---------~--~GY~-~y~~r~g-------~~~~G~AIf~r~~rf~l~~~~~i~~~~~~------ 56 (318)
.++|||||||++.. + .||. +|..|.+ ...||||||||++||++++...++|+...
T Consensus 297 ~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~ 376 (606)
T PLN03144 297 YRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEA 376 (606)
T ss_pred cCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCcc
Confidence 36899999999532 1 6898 8876653 25899999999999999999999876421
Q ss_pred --------------cCCcEEEEEEEEeccc--------CCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 021001 57 --------------LRENVAQLSAFEMRNT--------KSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN 114 (318)
Q Consensus 57 --------------~~~~v~~~~~l~~~~~--------~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~ 114 (318)
+++|+|++++|+.+.+ .++.|+|+||||+|+|...++|+.|++.|+++++++... .+
T Consensus 377 ~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~-~~ 455 (606)
T PLN03144 377 LIPSAQKKAALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAAS-AD 455 (606)
T ss_pred ccccccchhhhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhc-CC
Confidence 2467999999998721 245799999999999999999999999999999988653 37
Q ss_pred CcEEEeecCCCCCCCcchhhcccCcccccccccccccCCccccccccccccccccCCcccccCCCCCCCChHHHHhhhcC
Q 021001 115 IPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGN 194 (318)
Q Consensus 115 ~PvIl~GDFNs~P~s~~y~~L~~g~l~~~~~d~~~~sg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (318)
.|+|+|||||+.|+|++|++|++|.+...+.|+.. ++. + -|.
T Consensus 456 ~PvIlcGDFNS~P~S~vy~lLt~G~v~~~h~d~~~--------------------~~~----~----~~~---------- 497 (606)
T PLN03144 456 IPMLVCGDFNSVPGSAPHCLLATGKVDPLHPDLAV--------------------DPL----G----ILR---------- 497 (606)
T ss_pred CceEEeccCCCCCCChhhhhhhcCCcCCCchhhcc--------------------Ccc----c----ccc----------
Confidence 89999999999999999999999998776654310 000 0 011
Q ss_pred cccccccCCCCCccccccc---CCCC------CCC--CCCCCCccccccCccCcceeEEEeecC-ccccccccCCChhhh
Q 021001 195 AQCYLAVHPLKLNSSYASV---KGSP------RTR--GINGEPLATSYHSKFFGTVDYLWYTKG-LVPTRVLDTLPVDIL 262 (318)
Q Consensus 195 ~~~~~~~h~~~l~SaY~~~---~g~~------~~~--~~~~ep~fTn~~~~f~~~lDYIfys~~-~~~~~~L~~~~~~~l 262 (318)
....+.|+|+|+|||+.+ .|.. +.| ..++||.||||+.+|+||||||||+++ +.+.++|++|+++++
T Consensus 498 -~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNyt~~F~gtlDYIfys~~~L~v~~vL~lp~e~~l 576 (606)
T PLN03144 498 -PASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEESL 576 (606)
T ss_pred -ccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceeecCCcceeEEEEEEcCCCceEEeecCCCCHHHh
Confidence 024578999999999876 2211 011 125899999999999999999999975 556789999999999
Q ss_pred ccCCCCCCCCCCCcchheeeEEEEEe
Q 021001 263 RRTGGLPCKVRTVERVGFAISCCMTQ 288 (318)
Q Consensus 263 ~~~~~lPn~~~pSDHl~l~a~~~~~~ 288 (318)
.+..||||..||||||||+|+|+|+.
T Consensus 577 ~~~~gLPn~~~PSDHI~L~AeF~~~~ 602 (606)
T PLN03144 577 RKDTALPSPEWSSDHIALLAEFRCKP 602 (606)
T ss_pred cccCCCCCCCCCCccccEeEEEEecc
Confidence 99999999999999999999999975
No 2
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=1.3e-42 Score=332.84 Aligned_cols=281 Identities=25% Similarity=0.401 Sum_probs=210.4
Q ss_pred ccccccHHHHhhcC-----------CCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCc----cCCcEEEEEE
Q 021001 3 PSQKVNMPRVDRIE-----------PGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFG----LRENVAQLSA 66 (318)
Q Consensus 3 ~~~ivclqEv~~~~-----------~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~----~~~~v~~~~~ 66 (318)
++||+|||||++.. .||. +|+.+++.+.+||||+|++++|+++....+.+...+ -++||++++.
T Consensus 162 dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~ 241 (495)
T KOG2338|consen 162 DPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVS 241 (495)
T ss_pred CCCeeeehhhhhhhhHHHHHHHHhhcCceEEEEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEE
Confidence 68999999999763 7999 888888889999999999999999999998887543 2479999999
Q ss_pred EEecccC--CceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhC-CCcEEEeecCCCCCCCcchhhcccCccccc
Q 021001 67 FEMRNTK--SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWG-NIPVVLAGDFNITPQSAIYKFLSSSELNIK 143 (318)
Q Consensus 67 l~~~~~~--~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~-~~PvIl~GDFNs~P~s~~y~~L~~g~l~~~ 143 (318)
|+.+..+ ++.++|+||||.|||..+++|++|.+.|++.++++++... ..|+++|||||+.|++++|.+|+.+.+.+.
T Consensus 242 l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~ 321 (495)
T KOG2338|consen 242 LEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDSPPYLFLTSGPLIYD 321 (495)
T ss_pred EEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCCCcchhhhcCCceec
Confidence 9985431 5689999999999999999999999999999999987532 579999999999999999999999999887
Q ss_pred ccccccccCCccccccccccccc----cccCCc---ccccC---CCCCCCChHHHHhhhcCcc----c-ccccCCCC-Cc
Q 021001 144 SYDRRDLSGQRSCHLVQVFEVKK----EIINPF---AVMDR---LLPNGWTDEEVKVATGNAQ----C-YLAVHPLK-LN 207 (318)
Q Consensus 144 ~~d~~~~sg~~~~~~~~~~g~~~----~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~----~-~~~~h~~~-l~ 207 (318)
..+.+. .+|.+..++++.- ++.+.. +...+ .....|++.++..++|... . .....+++ ..
T Consensus 322 ~~~~~~----~e~s~~~~~~~~~~ge~g~d~~~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~~~~~~~~h~~~~~~~ 397 (495)
T KOG2338|consen 322 GRAAHT----IEDSHRYVFSESRLGEEGEDDEEESAAFSRGKGQLSQASIPKPEIFTATGDKNHLVELTYSEHESLKVNV 397 (495)
T ss_pred cccccc----ccccccccccccccCcccccchhhhhhhccCccccccccCCCccccccccccchhHHHHHHHhhhhhccc
Confidence 666542 2344443333110 000000 00111 1233455444444444211 0 11111233 34
Q ss_pred ccccccCCCCCCCCC---CCCCccccccCccCcceeEEEeecC-------------c-cccccccCCChhhhccCCCCCC
Q 021001 208 SSYASVKGSPRTRGI---NGEPLATSYHSKFFGTVDYLWYTKG-------------L-VPTRVLDTLPVDILRRTGGLPC 270 (318)
Q Consensus 208 SaY~~~~g~~~~~~~---~~ep~fTn~~~~f~~~lDYIfys~~-------------~-~~~~~L~~~~~~~l~~~~~lPn 270 (318)
|-|++.+|.++|+.. .+||.+|||...|+|++|||||++. . ....+|++|+..++.++...||
T Consensus 398 s~~s~g~~~~~~~~~~~~~gep~vt~~~~~~~g~~dyif~~~~~~~~~~~~~~~~~~ikl~~~l~ip~~~e~~k~~~p~~ 477 (495)
T KOG2338|consen 398 SLYSHGYGLVHTENAWLDRGEPGVTNYALTWKGTLDYIFYSPGDCKQSNREFEEDEAIKLKGLLRIPSPQEMWKAGQPPN 477 (495)
T ss_pred ceeeccccccchhhccccCCCcceecHHhhhccceeeEEeccCcccccchhhhcccceeEEEEecCCCHHHhhccCCCCC
Confidence 667777777666644 7899999999999999999999976 1 2335788999999998888899
Q ss_pred CCCCCcchheeeEEEEE
Q 021001 271 KVRTVERVGFAISCCMT 287 (318)
Q Consensus 271 ~~~pSDHl~l~a~~~~~ 287 (318)
..|+|||++|+|+|.+-
T Consensus 478 ~~~~SDH~aL~~~~~~~ 494 (495)
T KOG2338|consen 478 GRYGSDHIALVAQFSLV 494 (495)
T ss_pred CCCcccceEeeEeeEee
Confidence 99999999999999874
No 3
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=100.00 E-value=1e-34 Score=276.50 Aligned_cols=247 Identities=26% Similarity=0.437 Sum_probs=184.6
Q ss_pred ccccccHHHHhhcC---------CCCc-EEEEec------CCCceeEEEEEeCCceeeeeeeEEeccCCcc---------
Q 021001 3 PSQKVNMPRVDRIE---------PGYY-LYATAH------WDNVDGCAMFWKADKFRLLEQTSIEFKEFGL--------- 57 (318)
Q Consensus 3 ~~~ivclqEv~~~~---------~GY~-~y~~r~------g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~--------- 57 (318)
++|++|||||+++. .||+ .|..|+ .+..+|||||||+++|+++....++|+....
T Consensus 63 ~ad~icLqev~~~~~~~~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~ 142 (361)
T KOG0620|consen 63 NADILCLQEVDRYHDFFSPELEASGYSGIFIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQ 142 (361)
T ss_pred CcceeecchhhHHHHHccchhhhcCCcceeecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHH
Confidence 57999999997662 7999 887653 4569999999999999999998988876431
Q ss_pred ------CCcEEE-EEEEEecccCCceEE----EEEecccCCCCChhhHHHHHHHHHHHHH----HHH---------HHhC
Q 021001 58 ------RENVAQ-LSAFEMRNTKSRRVL----VGNIHVLYNPNRGEVKLGQICFLSSRAQ----IVA---------EKWG 113 (318)
Q Consensus 58 ------~~~v~~-~~~l~~~~~~~~~i~----V~ntHL~~~p~~~~~R~~Q~~~l~~~l~----~~~---------~~~~ 113 (318)
.++++. ++.|+... +..+. ++|+|+.|.+...++++.|+..++..++ ++. .+..
T Consensus 143 ~~~~~~~d~~~~~l~~L~~~~--~~~~~~~~~~~n~h~~~~~~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (361)
T KOG0620|consen 143 LNRLTTLDNSGNKLVSLKAEL--GNMVSLPHLLLNTHILWDLPYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIA 220 (361)
T ss_pred HHhhhccccccchhhhhhhhc--CCceeeccccccceeccCCCccchHHHHHHHHhhcccccchhhhhhhcccccccccc
Confidence 244444 33443322 33333 3799999999889999999999888742 111 1123
Q ss_pred CCcEEEeecCCCCCCCcchhhcccCcccccccccccccCCccccccccccccccccCCcccccCCCCCCCChHHHHhhhc
Q 021001 114 NIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATG 193 (318)
Q Consensus 114 ~~PvIl~GDFNs~P~s~~y~~L~~g~l~~~~~d~~~~sg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (318)
..|+++|||||++|.+++|.++..|.+..++.|++.+.-- .+.. .....
T Consensus 221 ~~p~l~~gdfNs~p~~~v~~~~~~~~~~~~~~d~~~~~~~-~~~~-------------------~~~~~----------- 269 (361)
T KOG0620|consen 221 SFPLLLCGDFNSTPLSPVYALLASGILSPEDADNKDLPLM-SALG-------------------SKVNK----------- 269 (361)
T ss_pred ccceeeeccccCCCCccceeecccCCCCcchhhHhhcccc-cccc-------------------ccccc-----------
Confidence 5899999999999999999999999998776665543200 0000 00000
Q ss_pred CcccccccCCCCCcccccccCCCCCCCCCCCCCccccccCccCcceeEEEeecCcc-ccccccCCCh-hhhccCCCCCCC
Q 021001 194 NAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLV-PTRVLDTLPV-DILRRTGGLPCK 271 (318)
Q Consensus 194 ~~~~~~~~h~~~l~SaY~~~~g~~~~~~~~~ep~fTn~~~~f~~~lDYIfys~~~~-~~~~L~~~~~-~~l~~~~~lPn~ 271 (318)
....+.|.+.++++|.. ++|.||||+.+|+|++|||||++... +..+|..+++ +.+.+..++||.
T Consensus 270 --~~~~~~~~~~~~~~~~~-----------~~~~ftn~t~~F~g~~DYIfys~~~~~~~~~L~~~~e~~~~~~~~~lPs~ 336 (361)
T KOG0620|consen 270 --SYEEMSHDQRRKLEYTT-----------GEPRFTNYTPGFKGTLDYIFYSKAALIVESALELLDEDELVIKVTGLPSP 336 (361)
T ss_pred --cccccchhhhccccccc-----------CccccccccCCccceeeEEEEccccccccccccCCChhhhhcccccCCCC
Confidence 01346788888888854 57889999999999999999998644 4567887774 777889999999
Q ss_pred CCCCcchheeeEEEEEecCCCCCC
Q 021001 272 VRTVERVGFAISCCMTQKLHESVS 295 (318)
Q Consensus 272 ~~pSDHl~l~a~~~~~~~~~~~~~ 295 (318)
.+||||++|+|+|++.+...+..+
T Consensus 337 ~~pSDHi~L~~ef~~~~~~~~~~~ 360 (361)
T KOG0620|consen 337 HHPSDHIPLLAEFEIAPPKDPLDS 360 (361)
T ss_pred CCCCccchhhccccccCcccCCCC
Confidence 999999999999999988777654
No 4
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=100.00 E-value=3e-34 Score=265.63 Aligned_cols=241 Identities=24% Similarity=0.379 Sum_probs=178.8
Q ss_pred ccccccHHHHhhcC-----------CCCc-EEEEecC----------CCceeEEEEEeC----CceeeeeeeEEeccCC-
Q 021001 3 PSQKVNMPRVDRIE-----------PGYY-LYATAHW----------DNVDGCAMFWKA----DKFRLLEQTSIEFKEF- 55 (318)
Q Consensus 3 ~~~ivclqEv~~~~-----------~GY~-~y~~r~g----------~~~~G~AIf~r~----~rf~l~~~~~i~~~~~- 55 (318)
++||+|||||++.. .||+ +|.++.+ ...+||||||++ +|+.++..-...|...
T Consensus 73 n~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~ 152 (378)
T COG5239 73 NADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPY 152 (378)
T ss_pred CCceeeeehhhhhHHHHHHHHHhcccccceEEecCCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccc
Confidence 68999999999763 8999 7654332 268999999998 5544443333222211
Q ss_pred ----------------ccCCcEE---EEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHh----
Q 021001 56 ----------------GLRENVA---QLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKW---- 112 (318)
Q Consensus 56 ----------------~~~~~v~---~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~---- 112 (318)
+..++++ +++.+..+.+ +.+++|+|||+.|+|...++++-|..++++++++...+.
T Consensus 153 ~~~er~r~t~~~lnri~e~~~~~w~~l~~~l~n~e~-gd~~~va~Th~~w~~~~~dvk~iq~s~l~~~~k~~~~e~~~~d 231 (378)
T COG5239 153 GYYERFRQTYILLNRIGEKDNIAWVCLFVGLFNKEP-GDTPYVANTHLPWDPKYRDVKLIQCSLLYRELKKVLKEELNDD 231 (378)
T ss_pred eeehhhhHHHHHHHHHhhhhhcchhheeeeeccCCC-CCceeEEeccccccCCCCchheehhhHHHHHHHHHhhhcCCcc
Confidence 1124555 6777777765 999999999999999999999999999999988765431
Q ss_pred ---------CCCcEEEeecCCCCCCCcchhhcccCcccccccccccccCCccccccccccccccccCCcccccCCCCCCC
Q 021001 113 ---------GNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGW 183 (318)
Q Consensus 113 ---------~~~PvIl~GDFNs~P~s~~y~~L~~g~l~~~~~d~~~~sg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (318)
+..++.+|||||+.-.|.+|.+|.++.+..+. + .+|.+... +
T Consensus 232 ~~~~d~k~~~~~~~l~~gd~ns~~~s~vy~~l~~~~~q~H~-~--------------~~~~~~~l----------y---- 282 (378)
T COG5239 232 KEEGDIKSYPEVDILITGDFNSLRASLVYKFLVTSQIQLHE-S--------------LNGRDFSL----------Y---- 282 (378)
T ss_pred hhccccccCcccccccCCCccceecceehhhhhhHHHHhhh-c--------------ccccchhh----------h----
Confidence 23477999999999999999999996553221 0 01111100 0
Q ss_pred ChHHHHhhhcCcccccccCCCCCcccccccCCCCCCCCCCCCCccccccCccCcceeEEEeecC--ccccccccCCChhh
Q 021001 184 TDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKG--LVPTRVLDTLPVDI 261 (318)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~h~~~l~SaY~~~~g~~~~~~~~~ep~fTn~~~~f~~~lDYIfys~~--~~~~~~L~~~~~~~ 261 (318)
+......|++.+.|.+. .+||.||||+++|+|.||||||..+ ...+..|..+..+.
T Consensus 283 -----------svg~~~~h~~n~~~~~~-----------~~~~~fTN~t~~~kG~iDYIfy~~~~~~~~~~~l~~ve~e~ 340 (378)
T COG5239 283 -----------SVGYKFVHPENLKSDNS-----------KGELGFTNWTPGFKGVIDYIFYHGGLLTRQTGLLGVVEGEY 340 (378)
T ss_pred -----------cccccccChhhcccCCC-----------cCCcccccccccccceeEEEEEecCcceeeeccccccccch
Confidence 01134678888888443 3799999999999999999999988 44566777777777
Q ss_pred hccCCCCCCCCCCCcchheeeEEEEEecCCCCCC
Q 021001 262 LRRTGGLPCKVRTVERVGFAISCCMTQKLHESVS 295 (318)
Q Consensus 262 l~~~~~lPn~~~pSDHl~l~a~~~~~~~~~~~~~ 295 (318)
..+..|+||..+||||+||.|+|.+.+.....+.
T Consensus 341 ~~k~~G~pn~~~pSdhipl~~ef~~~~~~~~~~~ 374 (378)
T COG5239 341 ASKVIGLPNMPFPSDHIPLLAEFASDHKNLMCNA 374 (378)
T ss_pred hhhhcccCCCCCccccccchhccccccccccccc
Confidence 7778899999999999999999999988776654
No 5
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.83 E-value=3.6e-20 Score=167.99 Aligned_cols=122 Identities=24% Similarity=0.273 Sum_probs=91.6
Q ss_pred cccccHHHHhhcC-----------------CCCc--EEEE----ecCCCceeEEEEEeCCceeeeeeeEEeccCC-ccCC
Q 021001 4 SQKVNMPRVDRIE-----------------PGYY--LYAT----AHWDNVDGCAMFWKADKFRLLEQTSIEFKEF-GLRE 59 (318)
Q Consensus 4 ~~ivclqEv~~~~-----------------~GY~--~y~~----r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~-~~~~ 59 (318)
+|||||||++... .|.. ++.. ..+...+|+||+ ++.++.......++.. +..+
T Consensus 42 ~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~GnaiL---S~~pi~~v~~~~lp~~~~~~~ 118 (259)
T COG3568 42 ADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYGEGQHGNAIL---SRLPIRDVENLALPDPTGLEP 118 (259)
T ss_pred cCeeeeecccccccccccccchhHHHHHHhcCCccccchhhhhhhcccceeeeEEE---ecCcccchhhccCCCCCCCCC
Confidence 7999999999521 1111 1111 124578999999 5777877777777763 5678
Q ss_pred cEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhccc
Q 021001 60 NVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSS 137 (318)
Q Consensus 60 ~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~ 137 (318)
|.++++.++.. . ++.+.|+|+||.+ ....|+.|+..|++.+. +.+ ..|+|+|||||++|+|+.|++...
T Consensus 119 Rgal~a~~~~~-~-g~~l~V~~~HL~l---~~~~R~~Q~~~L~~~~~-l~~---~~p~vl~GDFN~~p~s~~yr~~~~ 187 (259)
T COG3568 119 RGALLAEIELP-G-GKPLRVINAHLGL---SEESRLRQAAALLALAG-LPA---LNPTVLMGDFNNEPGSAEYRLAAR 187 (259)
T ss_pred ceeEEEEEEcC-C-CCEEEEEEEeccc---cHHHHHHHHHHHHhhcc-Ccc---cCceEEEccCCCCCCCccceeccC
Confidence 99999999875 2 7899999999987 56789999999988322 211 239999999999999999966554
No 6
>PRK11756 exonuclease III; Provisional
Probab=99.80 E-value=2.4e-19 Score=165.40 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=75.7
Q ss_pred CccccccHHHHhhc----------CCCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCC-ccCCcEEEEEEEEe
Q 021001 2 EPSQKVNMPRVDRI----------EPGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEF-GLRENVAQLSAFEM 69 (318)
Q Consensus 2 ~~~~ivclqEv~~~----------~~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~-~~~~~v~~~~~l~~ 69 (318)
+.+|||||||++.. ..||. ++.. .....|+||+.| ++++.... .+... ....+.++.+.++.
T Consensus 25 ~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~~--~~~~~GvailSr---~p~~~~~~-~~~~~~~~~~~r~l~~~i~~ 98 (268)
T PRK11756 25 HQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHG--QKGHYGVALLSK---QTPIAVRK-GFPTDDEEAQRRIIMATIPT 98 (268)
T ss_pred cCCCEEEEEecccccccCCHHHHHhcCCEEEEeC--CCCCCEEEEEEC---CChHHeEE-CCCCccccccCCEEEEEEEc
Confidence 46899999998622 26887 4432 235689999955 44443322 22211 11235556777765
Q ss_pred cccCCceEEEEEecccCCCCC-----hhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCc
Q 021001 70 RNTKSRRVLVGNIHVLYNPNR-----GEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSA 130 (318)
Q Consensus 70 ~~~~~~~i~V~ntHL~~~p~~-----~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~ 130 (318)
. ++.+.|+|+|+-..... ...|++|+..|.+.+.+... ...|+|+|||||..|++.
T Consensus 99 ~---~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~--~~~pvIl~GDfN~~~~~~ 159 (268)
T PRK11756 99 P---NGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETELS--PDNPLLIMGDMNISPTDL 159 (268)
T ss_pred C---CCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHHhc--cCCCEEEEeecccCCChh
Confidence 3 34599999999542211 12467788888888876533 367999999999998754
No 7
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.74 E-value=1.9e-17 Score=154.25 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=90.6
Q ss_pred CccccccHHHHhhc---------C-CCCc-E---EEE-e------------cCCCceeEEEEEeCCceeeeeeeEEeccC
Q 021001 2 EPSQKVNMPRVDRI---------E-PGYY-L---YAT-A------------HWDNVDGCAMFWKADKFRLLEQTSIEFKE 54 (318)
Q Consensus 2 ~~~~ivclqEv~~~---------~-~GY~-~---y~~-r------------~g~~~~G~AIf~r~~rf~l~~~~~i~~~~ 54 (318)
+.+|||||||+... + .+|. . .+. + ......|++|+ ||++++......|+.
T Consensus 35 ~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~~~g~~~~~g~~~~~~~~~~G~~iL---Sr~Pi~~~~~~~f~~ 111 (283)
T TIGR03395 35 KNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRSKKGWDKTLGNYSSSALEDGGVAIV---SKWPIEEKIQYIFNK 111 (283)
T ss_pred cCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccccccchhccccccccCccCCEEEEE---ECCCccccEEEEccC
Confidence 57899999999632 1 3453 1 111 0 01246799999 889998887766754
Q ss_pred Ccc----CCcEEEEEEEEecccCCceEEEEEecccCCCC------ChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCC
Q 021001 55 FGL----RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPN------RGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFN 124 (318)
Q Consensus 55 ~~~----~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~------~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFN 124 (318)
... ..+.++.+.++. . |+.+.|+||||.+... ....|..|+..|.+.+++... ..+.|+|||||||
T Consensus 112 ~~~~d~~~~kg~l~a~i~~--~-g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~-~~~~pvIl~GDfN 187 (283)
T TIGR03395 112 GCGADNLSNKGFAYVKINK--N-GKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNI-PKDETVLIGGDLN 187 (283)
T ss_pred CCCCccccCCceEEEEEec--C-CeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccC-CCCceEEEEeeCC
Confidence 321 246777777754 2 7899999999987421 145699999999988764211 1257899999999
Q ss_pred CCCCCcchhhccc
Q 021001 125 ITPQSAIYKFLSS 137 (318)
Q Consensus 125 s~P~s~~y~~L~~ 137 (318)
..|+|..|+.|..
T Consensus 188 ~~~~s~~~~~ml~ 200 (283)
T TIGR03395 188 VNKGSNEYHDMFK 200 (283)
T ss_pred CCCCCHHHHHHHH
Confidence 9999999988754
No 8
>PRK05421 hypothetical protein; Provisional
Probab=99.74 E-value=1.7e-17 Score=153.08 Aligned_cols=117 Identities=20% Similarity=0.159 Sum_probs=79.9
Q ss_pred CccccccHHHHhhc--------CCCCc-EEEE--ecCCCceeEEEEEeCCceeeeeeeEEeccCCcc-CCcEEEEEEEEe
Q 021001 2 EPSQKVNMPRVDRI--------EPGYY-LYAT--AHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGL-RENVAQLSAFEM 69 (318)
Q Consensus 2 ~~~~ivclqEv~~~--------~~GY~-~y~~--r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~-~~~v~~~~~l~~ 69 (318)
..+|+|||||++.. ..|+. .|.. ..+...+|+||+ +|+++.....+....... .+|.++++.++.
T Consensus 68 ~~~DiI~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvaiL---SR~pi~~~~~~~~~~~~~~~~r~~l~a~~~~ 144 (263)
T PRK05421 68 KDADLVLLQEAQTTPELVQFATANYLAADQAPAFVLPQHPSGVMTL---SKAHPVYCCPLREREPWLRLPKSALITEYPL 144 (263)
T ss_pred cCCCEEEEEecccCcchHHHhhcccchHHhccccccCCCccceeEe---eecccceeeccCCCCccccCcceeEEEEEEe
Confidence 36899999999732 23444 3322 123457899999 788887665543332222 247888888876
Q ss_pred cccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCC
Q 021001 70 RNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQ 128 (318)
Q Consensus 70 ~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~ 128 (318)
. .++.+.|+||||.+.......|..|+..|.+.+.+. ..|+|+|||||+.+.
T Consensus 145 ~--~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~~~~-----~~p~Il~GDFN~~~~ 196 (263)
T PRK05421 145 P--NGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQIAHH-----SGPVILAGDFNTWSR 196 (263)
T ss_pred C--CCCEEEEEEECccccCcChHHHHHHHHHHHHHHHhC-----CCCEEEEcccccCcc
Confidence 4 267899999999642112456889998888876543 469999999998654
No 9
>PTZ00297 pantothenate kinase; Provisional
Probab=99.70 E-value=1.9e-16 Score=173.35 Aligned_cols=133 Identities=18% Similarity=0.248 Sum_probs=92.8
Q ss_pred CCccccccHHHHhhcC----------------------CCCc--EEEEec--CC-------CceeEEEEEeCCceeeeee
Q 021001 1 MEPSQKVNMPRVDRIE----------------------PGYY--LYATAH--WD-------NVDGCAMFWKADKFRLLEQ 47 (318)
Q Consensus 1 ~~~~~ivclqEv~~~~----------------------~GY~--~y~~r~--g~-------~~~G~AIf~r~~rf~l~~~ 47 (318)
|+.+|||||||+.... .||. +|++.. .. ...|+||+ |||++++.
T Consensus 40 l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL---SR~PI~~~ 116 (1452)
T PTZ00297 40 VDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA---SRFPIWQR 116 (1452)
T ss_pred ccCCCEEEEecccccccccccccccchhhHHHHHHHHhcCCceeEeecCccccccccCccccCCEEEEE---ECCChhhc
Confidence 4578999999998631 4776 343311 11 57899999 99999999
Q ss_pred eEEeccCCcc----CCcEEEEEEEEeccc--CCceEEEEEecccCCCCChhhHHHHHHHHHHHHHH-HHHH------hCC
Q 021001 48 TSIEFKEFGL----RENVAQLSAFEMRNT--KSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQI-VAEK------WGN 114 (318)
Q Consensus 48 ~~i~~~~~~~----~~~v~~~~~l~~~~~--~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~-~~~~------~~~ 114 (318)
..+.++.... ..|.++.+.++.... .++.+.|+||||.+... ...|..|+..+.+.++. +..- ..+
T Consensus 117 ~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~-~~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~ 195 (1452)
T PTZ00297 117 GSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDS-LPSTSSQVQETRRFVESVIANVYEQNNDGAE 195 (1452)
T ss_pred eeeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCC-cchHHHHHHHHHHHHHHhhhhhcccccCCCC
Confidence 9999886432 357888888886421 12589999999998532 24588888888877765 3110 135
Q ss_pred CcEEEeecCCCC--------CCCcchhhccc
Q 021001 115 IPVVLAGDFNIT--------PQSAIYKFLSS 137 (318)
Q Consensus 115 ~PvIl~GDFNs~--------P~s~~y~~L~~ 137 (318)
.|+|||||||.. |.+..|+.|.+
T Consensus 196 ~PvILaGDFN~~~~~~~~~~~~s~e~~~ml~ 226 (1452)
T PTZ00297 196 IPFVIAGDFNINGIDPHNGGHPTKRFQELLN 226 (1452)
T ss_pred CCEEEEeeCCCccccccccCCccHHHHHHHH
Confidence 699999999955 24466665554
No 10
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.67 E-value=8.3e-16 Score=143.03 Aligned_cols=232 Identities=19% Similarity=0.204 Sum_probs=138.5
Q ss_pred CccccccHHHHhhcC----------C--CCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCcc----------C
Q 021001 2 EPSQKVNMPRVDRIE----------P--GYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGL----------R 58 (318)
Q Consensus 2 ~~~~ivclqEv~~~~----------~--GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~----------~ 58 (318)
|.-||+-||||.... . -|. +|. .|-.+-|+|+| ||+++++.-.-.++-.|. .
T Consensus 40 E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FH--SGimGaGL~vf---SK~PI~~t~~~~y~lNG~p~~i~rGDWf~ 114 (422)
T KOG3873|consen 40 EKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFH--SGIMGAGLCVF---SKHPILETLFHRYSLNGYPHAIHRGDWFG 114 (422)
T ss_pred cccchhhHHHHHHHHHHHHHHHhccccCchHHhhh--cccccCceEEe---ecCchhhhhhhccccCCccceeeeccccc
Confidence 678999999996442 2 233 443 35578999999 999999876555544331 1
Q ss_pred CcEEEEEEEEecccCCceEEEEEecccCCCC-Chhh----HHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchh
Q 021001 59 ENVAQLSAFEMRNTKSRRVLVGNIHVLYNPN-RGEV----KLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYK 133 (318)
Q Consensus 59 ~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~-~~~~----R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~ 133 (318)
+...-+++|.. +|+.+.++||||...-. .+|. |..||-.+.+.++...+ +..-||+|||||+.|.+-.++
T Consensus 115 GK~Vgl~~l~~---~g~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t~q--~~~vVI~~GDLN~~P~dl~~~ 189 (422)
T KOG3873|consen 115 GKGVGLTVLLV---GGRMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRATRQ--NADVVILAGDLNMQPQDLGHK 189 (422)
T ss_pred cceeEEEEEee---CCEEeeeeehhccccccccCchhhhHHHHHHHHHHHHHHHHhc--CCcEEEEecCCCCCcccccee
Confidence 23333445554 37899999999976322 2333 99999999998877655 245699999999999999999
Q ss_pred hcccCcccccccccccccCCccccccccccccccccCCcccccCCCCCCCChHHHHhhhcCcccccccCCCCCccccccc
Q 021001 134 FLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGNAQCYLAVHPLKLNSSYASV 213 (318)
Q Consensus 134 ~L~~g~l~~~~~d~~~~sg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~l~SaY~~~ 213 (318)
+|+.-++ .|.|+..=--.|.... ...++ ..++++|. .+. .....|.+.
T Consensus 190 ll~~a~l----~daw~~~h~~q~e~~~--------------------~r~s~-~~~l~~g~-tcd------~~~N~y~~a 237 (422)
T KOG3873|consen 190 LLLSAGL----VDAWTSLHLDQCESDS--------------------FRLSE-DKELVEGN-TCD------SPLNCYTSA 237 (422)
T ss_pred eeeccch----hhhHhhhchhhhcCcc--------------------cccch-hhhhhcCC-ccc------CcchhhhHH
Confidence 9985444 2445322100011000 00000 11112221 000 011223211
Q ss_pred CCCCCCCCCCCCCccccccCccCcceeEEEeecCccccccccCCChhhhccCCCCCCCCCC-CcchheeeEEEEEecCCC
Q 021001 214 KGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRT-VERVGFAISCCMTQKLHE 292 (318)
Q Consensus 214 ~g~~~~~~~~~ep~fTn~~~~f~~~lDYIfys~~~~~~~~L~~~~~~~l~~~~~lPn~~~p-SDHl~l~a~~~~~~~~~~ 292 (318)
. +.++ .-+...|||+|+++....++.-+ -+++ .+..|...++ |||.+++|.+.|.+.+-+
T Consensus 238 q--------k~~d------dp~~~RiDYvl~k~~~~~~~~a~----~~~t-~~rvP~~d~s~SDH~Al~a~L~I~~~~~~ 298 (422)
T KOG3873|consen 238 Q--------KRED------DPLGKRIDYVLVKPGDCNAKIAE----VEFT-EPRVPGEDCSYSDHEALMATLKIFKQPPR 298 (422)
T ss_pred H--------hCCC------CccceeeeEEEEcCcceEEEeee----EEec-CCCCCCCCCCccchhhheeEEEeecCCCC
Confidence 0 0111 12467999999998753222111 0111 2368888888 999999999999977666
Q ss_pred CC
Q 021001 293 SV 294 (318)
Q Consensus 293 ~~ 294 (318)
+.
T Consensus 299 ~~ 300 (422)
T KOG3873|consen 299 SE 300 (422)
T ss_pred CC
Confidence 55
No 11
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.66 E-value=8.7e-16 Score=140.54 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=71.3
Q ss_pred CccccccHHHHhhc----------CCCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEec
Q 021001 2 EPSQKVNMPRVDRI----------EPGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMR 70 (318)
Q Consensus 2 ~~~~ivclqEv~~~----------~~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~ 70 (318)
..+|||||||++.. ..||. ++... ....|+||++|+....+.. .+.........|+. .+.+
T Consensus 25 ~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~--~g~~Gvailsr~~~~~~~~--~~~~~~~~~~~r~i-~~~~--- 96 (254)
T TIGR00195 25 NQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ--KGYSGVAIFSKEEPLSVRR--GFGVEEEDAEGRII-MAEF--- 96 (254)
T ss_pred cCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC--CCcceEEEEEcCCcceEEE--CCCCcccccCCCEE-EEEE---
Confidence 36899999998753 17887 44333 3567999998865443321 11111111234543 2332
Q ss_pred ccCCceEEEEEecccCCCCCh----hhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 71 NTKSRRVLVGNIHVLYNPNRG----EVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 71 ~~~~~~i~V~ntHL~~~p~~~----~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
..+.|+|||+....... ..|..+...|.+.+.++.. ...|+|+|||||..|.+
T Consensus 97 ----~~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~--~~~pvIi~GDfN~~~~~ 153 (254)
T TIGR00195 97 ----DSFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLEKLVD--KDKPVLICGDMNIAPTE 153 (254)
T ss_pred ----CCEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeecccCCCh
Confidence 13889999996521111 2377778888888777643 25799999999998875
No 12
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.55 E-value=5.4e-14 Score=128.87 Aligned_cols=113 Identities=14% Similarity=0.204 Sum_probs=64.8
Q ss_pred CccccccHHHHhhc-------CCCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccC
Q 021001 2 EPSQKVNMPRVDRI-------EPGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTK 73 (318)
Q Consensus 2 ~~~~ivclqEv~~~-------~~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~ 73 (318)
+.+||+||||++.. .+||. ++.....++..|+||+.|.....+.. .+.........|+. .++.
T Consensus 26 ~~~DIiclQEtK~~~~~~~~~~~gY~~~~~~~~~kgy~GVAi~~k~~~~~v~~--~~~~~~~d~eGR~I---~~~~---- 96 (250)
T PRK13911 26 VDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKKEPLSVSY--GINIEEHDKEGRVI---TCEF---- 96 (250)
T ss_pred cCCCEEEEEeecccccccccccCCceEEEEecccCccceEEEEEcCCchheEE--cCCCCcccccCCEE---EEEE----
Confidence 57999999999943 37998 43322234678999998865322211 11111111234553 2232
Q ss_pred CceEEEEEecccCCCCChhh----HHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCC
Q 021001 74 SRRVLVGNIHVLYNPNRGEV----KLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQ 128 (318)
Q Consensus 74 ~~~i~V~ntHL~~~p~~~~~----R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~ 128 (318)
..+.|+|+..--.- .+.. |+.-...+.+.++.+. ...|+|+|||||..|.
T Consensus 97 -~~~~l~nvY~Pn~~-~~~~r~~~K~~~~~~~~~~l~~l~---~~~~~Ii~GD~Nva~~ 150 (250)
T PRK13911 97 -ESFYLVNVYTPNSQ-QALSRLSYRMSWEVEFKKFLKALE---LKKPVIVCGDLNVAHN 150 (250)
T ss_pred -CCEEEEEEEecCCC-CCCcchHHHHHHHHHHHHHHHhcc---cCCCEEEEccccCCCC
Confidence 25899999973211 1222 3333344444554442 2579999999998776
No 13
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.55 E-value=3.3e-14 Score=129.48 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=67.2
Q ss_pred ccccccHHHHhhcC----------CCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccC---CccCCcEEEEEEEE
Q 021001 3 PSQKVNMPRVDRIE----------PGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKE---FGLRENVAQLSAFE 68 (318)
Q Consensus 3 ~~~ivclqEv~~~~----------~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~---~~~~~~v~~~~~l~ 68 (318)
.+|||||||+|... .||. ++.... ++..|+||+.|.....+ ..-|.. .....|+. .+.+.
T Consensus 26 ~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~gq-KgysGVailsr~~~~~v----~~g~~~~~~~d~e~R~I-~a~~~ 99 (261)
T COG0708 26 QPDVLCLQETKAQDEQFPREELEALGYHHVFNHGQ-KGYSGVAILSKKPPDDV----RRGFPGEEEDDEEGRVI-EAEFD 99 (261)
T ss_pred CCCEEEEEecccCcccCCHhHHhhCCceEEEecCc-CCcceEEEEEccCchhh----hcCCCCCccccccCcEE-EEEEC
Confidence 57999999999653 7996 554322 57899999976543311 111221 11123543 23331
Q ss_pred ecccCCceEEEEEecccCCCCChhh----HHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 69 MRNTKSRRVLVGNIHVLYNPNRGEV----KLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 69 ~~~~~~~~i~V~ntHL~~~p~~~~~----R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
+ |.|+|..+--+...+.. |+.-...+.+.+.+..+ .+.|+|+|||||-.|..
T Consensus 100 -----~--~~v~~~Y~PnG~~~~~~k~~yKl~f~~~l~~~l~~l~~--~~~~~vl~GD~NIap~~ 155 (261)
T COG0708 100 -----G--FRVINLYFPNGSSIGLEKFDYKLRFLDALRNYLEELLK--KGKPVVLCGDFNIAPEE 155 (261)
T ss_pred -----C--EEEEEEEcCCCCCCCCcchHHHHHHHHHHHHHHHHHhh--cCCCEEEecccccCCch
Confidence 2 88888887332111222 55555566666666554 25899999999998863
No 14
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=6.5e-14 Score=127.47 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=68.1
Q ss_pred CccccccHHHHhhc----------CCCCc-EEEEecCCCceeEEEEEeCCceeeeeeeE-EeccCCccCCcEEEEEEEEe
Q 021001 2 EPSQKVNMPRVDRI----------EPGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTS-IEFKEFGLRENVAQLSAFEM 69 (318)
Q Consensus 2 ~~~~ivclqEv~~~----------~~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~-i~~~~~~~~~~v~~~~~l~~ 69 (318)
..+|||||||++.. ..||. +|.........|+||++|.. +..... +.........|. + .++
T Consensus 26 ~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~ailsr~~---~~~~~~~~~~~~~~~~~r~-l--~~~- 98 (255)
T TIGR00633 26 EQPDVLCLQETKVADEQFPAELFEELGYHVFFHGAKSKGYSGVAILSKVE---PLDVRYGFGGEEHDEEGRV-I--TAE- 98 (255)
T ss_pred cCCCEEEEEeccCchhhCCHhHhccCCceEEEeecccCCcceEEEEEcCC---cceEEECCCCCcccCCCcE-E--EEE-
Confidence 36899999999842 26888 55443323568999997754 322211 111111112232 2 222
Q ss_pred cccCCceEEEEEecccCCCCCh----hhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 70 RNTKSRRVLVGNIHVLYNPNRG----EVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 70 ~~~~~~~i~V~ntHL~~~p~~~----~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
.+.+.|+|+|+-.....+ ..|..|...+.+.+.+... ...|+|+|||||+.|..
T Consensus 99 ----~~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~Il~GDFN~~~~~ 156 (255)
T TIGR00633 99 ----FDGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYEKELD--AGKPVIICGDMNVAHTE 156 (255)
T ss_pred ----ECCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeecccCCCh
Confidence 236899999985432111 2466677777766544322 35799999999998863
No 15
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.41 E-value=2.1e-12 Score=118.41 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=70.1
Q ss_pred CCCc-EEEEec--CCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccCCceEEEEEecccCCCCChhh
Q 021001 17 PGYY-LYATAH--WDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEV 93 (318)
Q Consensus 17 ~GY~-~y~~r~--g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~ 93 (318)
+|+. +|.++. +....|+||+ +|++..+...+..+. ...|-.+.+.++ + +.++|||+.+.. +..
T Consensus 101 pgm~YiY~~aiD~~ggr~glAIl---Sr~~a~~~~~l~~p~--~~~Rpilgi~i~-----~--~~ffstH~~a~~--~~d 166 (271)
T PRK15251 101 PNQVYIYYSRVDVGANRVNLAIV---SRRRADEVIVLRPPT--VASRPIIGIRIG-----N--DVFFSIHALANG--GTD 166 (271)
T ss_pred CCceEEEEecccCCCCceeEEEE---ecccccceEEecCCC--CcccceEEEEec-----C--eEEEEeeecCCC--Ccc
Confidence 4454 443322 4688999999 888877666666543 234544444431 2 799999998852 445
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhcc
Q 021001 94 KLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLS 136 (318)
Q Consensus 94 R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~ 136 (318)
|.+|++.+.+.... .....|.++|||||..|+|..+.++.
T Consensus 167 a~aiV~~I~~~f~~---~~~~~pw~I~GDFNr~P~sl~~~l~~ 206 (271)
T PRK15251 167 AGAIVRAVHNFFRP---NMRHINWMIAGDFNRSPDRLESTLDT 206 (271)
T ss_pred HHHHHHHHHHHHhh---ccCCCCEEEeccCCCCCcchhhhhcc
Confidence 88888888777641 12347999999999999999776653
No 16
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.30 E-value=1.5e-11 Score=113.97 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=83.7
Q ss_pred CccccccHHHHhhcC----------------CCCcEE-EEecC--CCceeEEEEEeCCceeeeeeeEEeccCCcc---CC
Q 021001 2 EPSQKVNMPRVDRIE----------------PGYYLY-ATAHW--DNVDGCAMFWKADKFRLLEQTSIEFKEFGL---RE 59 (318)
Q Consensus 2 ~~~~ivclqEv~~~~----------------~GY~~y-~~r~g--~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~---~~ 59 (318)
-++|||++||+.... .+|++. ..+.| ..+|..|+|||++|+++++...+.-...++ =.
T Consensus 47 ~~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~~F~ 126 (276)
T smart00476 47 SRYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGNDVFS 126 (276)
T ss_pred ccCCEEEEEEeecchhHHHHHHHHHHhhcCCCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCcccccc
Confidence 368999999997421 278844 33443 357999999999999999887652211112 14
Q ss_pred cEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCC
Q 021001 60 NVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQ 128 (318)
Q Consensus 60 ~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~ 128 (318)
|...++.|+.+.+.++.|.++|+|+.+ ..+..++..|.+.+....+++...|+|++||||+.+.
T Consensus 127 ReP~~~~F~~~~~~~~~F~li~~H~~p-----~~~~~e~~aL~~v~~~~~~~~~~~~villGDFNa~~~ 190 (276)
T smart00476 127 REPFVVKFSSPSTAVKEFVIVPLHTTP-----EAAVAEIDALYDVYLDVRQKWGTEDVIFMGDFNAGCS 190 (276)
T ss_pred ccceEEEEEeCCCCCccEEEEEecCCh-----HHHHHHHHHHHHHHHHHHHhhccCCEEEEccCCCCCC
Confidence 788899999875435789999999965 2344455444443333333445789999999999774
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.30 E-value=6.2e-12 Score=113.28 Aligned_cols=116 Identities=14% Similarity=0.185 Sum_probs=84.4
Q ss_pred ccccccHHHHhhcC--------CCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccC
Q 021001 3 PSQKVNMPRVDRIE--------PGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTK 73 (318)
Q Consensus 3 ~~~ivclqEv~~~~--------~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~ 73 (318)
++|+||||||--.. .-|. ++... ....|-+++ .+++|.+-+...+.|...++ .|-.+++.....
T Consensus 130 sPdiiflQEV~p~~y~~~~K~~s~y~i~~~~~--~~~~~~~~l-~~s~~~Vks~~~i~F~NS~M-~R~L~I~Ev~v~--- 202 (349)
T KOG2756|consen 130 SPDVIFLQEVIPPYYSYLKKRSSNYEIITGHE--EGYFTAIML-KKSRVKVKSQEIIPFPNSKM-MRNLLIVEVNVS--- 202 (349)
T ss_pred CCCEEEEeecCchhhHHHHHhhhheeEEEecc--ceeeeeeee-ehhhcCccccceeccCcchh-hheeEEEEEeec---
Confidence 78999999986321 2233 33322 234554444 56899999999999998776 355567776653
Q ss_pred CceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCC
Q 021001 74 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNI 125 (318)
Q Consensus 74 ~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs 125 (318)
|..+++.|+||...-.....|.+|-...++++++..+..++.-||+.||.|.
T Consensus 203 G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~EaIe~lPnA~ViFGGD~Nl 254 (349)
T KOG2756|consen 203 GNKLCLMTSHLESTRGHAPERMNQFKMVLKKMQEAIESLPNATVIFGGDTNL 254 (349)
T ss_pred CceEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHhCCCceEEEcCcccc
Confidence 7889999999987433345699998888888887776556777999999996
No 18
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.21 E-value=9.9e-11 Score=108.56 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=73.7
Q ss_pred ccccccHHHHhhcC--------CCCcEE--EEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEeccc
Q 021001 3 PSQKVNMPRVDRIE--------PGYYLY--ATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNT 72 (318)
Q Consensus 3 ~~~ivclqEv~~~~--------~GY~~y--~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~ 72 (318)
..|+|-+||..+.. ..|..| ... +....+.+++-|+... ......-++... ++.++....+ .
T Consensus 114 ~~D~v~~~E~~~~~~~~~~~l~~~yP~~~~~~~-~~~~~~~a~~sr~~~~-~~~~~e~~~~~p--k~~~~t~~~~----~ 185 (309)
T COG3021 114 DADAVTTPEGVQLWTAKVGALAAQYPAFILCQH-PTGVFTLAILSRRPCC-PLTEAEPWLRLP--KSALATAYPL----P 185 (309)
T ss_pred CcchhhhHHHHHHhHhHHHHHHHhCCceeecCC-CCCeeeeeeccccccc-cccccCccccCC--ccceeEEEEc----C
Confidence 46788888888664 345422 222 2256777777554321 111111111111 2334333222 1
Q ss_pred CCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhccc
Q 021001 73 KSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSS 137 (318)
Q Consensus 73 ~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~ 137 (318)
.|+.+.|++.|..-.|-..+....|...+.+.+... +.|+|+.||||+.|.|..++.+..
T Consensus 186 ~g~~l~v~~lh~~~~~~~~~~~~~ql~~l~~~i~~~-----~gpvIlaGDfNa~pWS~~~~R~~~ 245 (309)
T COG3021 186 DGTELTVVALHAVNFPVGTDPQRAQLLELGDQIAGH-----SGPVILAGDFNAPPWSRTAKRMAA 245 (309)
T ss_pred CCCEEEEEeeccccccCCccHHHHHHHHHHHHHHcC-----CCCeEEeecCCCcchhHHHHHHHH
Confidence 388999999999832433444338888888877665 579999999999999998877654
No 19
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.20 E-value=1.2e-10 Score=102.73 Aligned_cols=123 Identities=21% Similarity=0.256 Sum_probs=72.8
Q ss_pred ccccccHHHHhhc---------C---CCCc-EEEEecCC----CceeEEEEEeCCceeeeeeeEEeccCCccCCc-----
Q 021001 3 PSQKVNMPRVDRI---------E---PGYY-LYATAHWD----NVDGCAMFWKADKFRLLEQTSIEFKEFGLREN----- 60 (318)
Q Consensus 3 ~~~ivclqEv~~~---------~---~GY~-~y~~r~g~----~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~----- 60 (318)
.+|||||||+... + .++. ........ ...|+||++|.+.+.........+........
T Consensus 29 ~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (249)
T PF03372_consen 29 DPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSK 108 (249)
T ss_dssp T-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEE
T ss_pred CCCEEEEecchhhhhhhhhhhhcccccccccceeccccccccccCceEEEEEcccccccccccccccccccccccccccc
Confidence 4899999999821 1 2212 22222111 36899999998766555444433333321110
Q ss_pred EEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcc
Q 021001 61 VAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAI 131 (318)
Q Consensus 61 v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~ 131 (318)
....+.++.. ++.|.|+|+|+.+ ....|..|...+++.+..+.......|+|||||||+.|.+..
T Consensus 109 ~~~~~~~~~~---~~~i~v~~~H~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~ 173 (249)
T PF03372_consen 109 SKGIVPVSIN---GKPITVVNVHLPS---SNDERQEQWRELLARIQKIYADNPNEPVIVMGDFNSRPDSRD 173 (249)
T ss_dssp EEEEEEEEEE---TEEEEEEEEETTS---HHHHHHHHHHHHHHHHHHHHHTSSCCEEEEEEE-SS-BSSGG
T ss_pred cccccccccc---ceEEEeeeccccc---cchhhhhhhhhhhhhhhhcccccccceEEEEeecccCCccch
Confidence 0011112221 6789999999865 345567667788888877766433347999999999998766
No 20
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=98.17 E-value=6.3e-06 Score=84.04 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=78.3
Q ss_pred CCCceeEEEEEeCCceeeeeeeEEeccCCcc--------CCcEEEEEEEEecccCCceEEEEEecccCC----CCC----
Q 021001 27 WDNVDGCAMFWKADKFRLLEQTSIEFKEFGL--------RENVAQLSAFEMRNTKSRRVLVGNIHVLYN----PNR---- 90 (318)
Q Consensus 27 g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~--------~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~----p~~---- 90 (318)
+.-..+++++||.++..++....+.=...-. +.|--+...++.... +..|.|+..||... |-+
T Consensus 566 gtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~~~~-~ekfvvVvNHfkSKgs~~p~~gd~~ 644 (798)
T COG2374 566 GTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTFQDLSG-GEKFVVVVNHFKSKGSDCPVDGDTQ 644 (798)
T ss_pred CCCceeEEEEeccceEEecccccccccccccccccccccccCcchhhhhhhccC-CcEEEEEEeeecccCCCCCCccccc
Confidence 4567889999999988877654433121100 123334445666654 67799999999863 311
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhcccC
Q 021001 91 ------GEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSS 138 (318)
Q Consensus 91 ------~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~g 138 (318)
...|.+||..|..+++.......+.|++|.||||+-..+.+++.|.+.
T Consensus 645 dgQg~~~~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~edpI~~l~~a 698 (798)
T COG2374 645 DGQGNSNQTRVRAAQALAAFLATNPTGKADADIVILGDFNDYAFEDPIQALEGA 698 (798)
T ss_pred ccccchhhHHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhhccHHHHHhhc
Confidence 123999999999999865444457899999999999999999999884
No 21
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=97.85 E-value=5.7e-05 Score=71.51 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=66.7
Q ss_pred CCceeEEEEEeCCceeeee---eeEEeccCCc-cCCcEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHH
Q 021001 28 DNVDGCAMFWKADKFRLLE---QTSIEFKEFG-LRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSS 103 (318)
Q Consensus 28 ~~~~G~AIf~r~~rf~l~~---~~~i~~~~~~-~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~ 103 (318)
..+-++.||.|++-..-+. ...+...-.+ +....++.+.++.. +..++++|+||..+...-..|..|...+++
T Consensus 90 l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~---~~~~~fv~~HL~a~~~~~~~R~~~~~~I~~ 166 (310)
T smart00128 90 LVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLS---DTSFCFVNSHLAAGASNVEQRNQDYKTILR 166 (310)
T ss_pred ecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEc---CcEEEEEeeccccccchhhhhHHHHHHHHH
Confidence 3567899998887643332 2223222222 23556677777763 679999999998865444568888888876
Q ss_pred HHHHHHH----HhCCCcEEEeecCCCCCCC----cchhhcccC
Q 021001 104 RAQIVAE----KWGNIPVVLAGDFNITPQS----AIYKFLSSS 138 (318)
Q Consensus 104 ~l~~~~~----~~~~~PvIl~GDFNs~P~s----~~y~~L~~g 138 (318)
.+.--.. ......+|++||||.-=+. .+-+++..+
T Consensus 167 ~~~f~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~ 209 (310)
T smart00128 167 ALSFPERAELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKK 209 (310)
T ss_pred hcCCCCCccccccccceEEEecCcceeecCCCHHHHHHHHhhC
Confidence 6521000 0124679999999965442 334555544
No 22
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=97.47 E-value=0.0026 Score=64.42 Aligned_cols=94 Identities=10% Similarity=0.068 Sum_probs=55.3
Q ss_pred CceeEEEEEeCCceeeeeeeEEeccCCc----cCCcEEEEEEEEecccCCceEEEEEecccCCCCChh--hHHHHHHHHH
Q 021001 29 NVDGCAMFWKADKFRLLEQTSIEFKEFG----LRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGE--VKLGQICFLS 102 (318)
Q Consensus 29 ~~~G~AIf~r~~rf~l~~~~~i~~~~~~----~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~--~R~~Q~~~l~ 102 (318)
.+-.++||.|++-..-++.-....-..| +.+..++.+.|... +..|+++|+||..+..... .|..+...|+
T Consensus 373 vGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~---~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~ 449 (621)
T PLN03191 373 VGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLF---QSRLCFVCSHLTSGHKDGAEQRRNADVYEII 449 (621)
T ss_pred eeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEc---CcEEEEEEeccccccccchHHHHHHHHHHHH
Confidence 4566688888765444433222222222 23455666677664 6789999999988654333 3666777777
Q ss_pred HHHHHHHHH---------hCCCcEEEeecCCCC
Q 021001 103 SRAQIVAEK---------WGNIPVVLAGDFNIT 126 (318)
Q Consensus 103 ~~l~~~~~~---------~~~~PvIl~GDFNs~ 126 (318)
+.+. +... ...--+|++||||.-
T Consensus 450 ~~l~-F~~~~~~~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 450 RRTR-FSSVLDTDQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred hccc-cCcccccCCCccccccceEEEecCcccc
Confidence 6532 1100 012359999999954
No 23
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=97.47 E-value=0.00019 Score=67.89 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=66.6
Q ss_pred CcEEEEEEEEecccCCc-eEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhccc
Q 021001 59 ENVAQLSAFEMRNTKSR-RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSS 137 (318)
Q Consensus 59 ~~v~~~~~l~~~~~~~~-~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~ 137 (318)
.+.++.+.++.-...++ .+++.+||++|+|.....|+.|...+++++.+.... ..++++|||||.+|.+.+|-.++.
T Consensus 121 ~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~--~w~~l~~~l~n~e~gd~~~va~Th 198 (378)
T COG5239 121 KVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNI--AWVCLFVGLFNKEPGDTPYVANTH 198 (378)
T ss_pred ccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhc--chhheeeeeccCCCCCceeEEecc
Confidence 45555555554211134 589999999999987788999999999998876542 367899999999999999988887
Q ss_pred Ccccccccccc
Q 021001 138 SELNIKSYDRR 148 (318)
Q Consensus 138 g~l~~~~~d~~ 148 (318)
-...+...|..
T Consensus 199 ~~w~~~~~dvk 209 (378)
T COG5239 199 LPWDPKYRDVK 209 (378)
T ss_pred ccccCCCCchh
Confidence 76665555543
No 24
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=97.43 E-value=0.00018 Score=57.34 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=21.3
Q ss_pred cccccCccCcceeEEEeecCccccccccCCChhhhccCCCCCCCCCCCcchhee
Q 021001 228 ATSYHSKFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVERVGFA 281 (318)
Q Consensus 228 fTn~~~~f~~~lDYIfys~~~~~~~~L~~~~~~~l~~~~~lPn~~~pSDHl~l~ 281 (318)
+|-+...-..+||+||.+........ . -.......|||.+|.
T Consensus 78 ~T~~~~~~~s~iD~~~~s~~~~~~~~------~------~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 78 PTFISNSHGSRIDLILTSDNLLSWCV------W------VISSDDSGSDHCPIT 119 (119)
T ss_dssp -SEEECCCEE--EEEEEECCGCCCEE------E------EEETTSSSSSB--EE
T ss_pred CcccCCCCCceEEEEEECChHHhcCc------E------EEeCCCCCCCccCCC
Confidence 33333333689999999987654300 0 122335779999974
No 25
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0014 Score=68.67 Aligned_cols=108 Identities=13% Similarity=0.189 Sum_probs=66.8
Q ss_pred CceeEE--EEEeCCceeeeeeeEEeccCCccC---C-cEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHH
Q 021001 29 NVDGCA--MFWKADKFRLLEQTSIEFKEFGLR---E-NVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLS 102 (318)
Q Consensus 29 ~~~G~A--If~r~~rf~l~~~~~i~~~~~~~~---~-~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~ 102 (318)
.--|++ +|.|.+....++.-...-.++|++ . ..|+...+... ...||++++||..+-..-++|-+--..|.
T Consensus 624 QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~---~TsfCFv~SHlAAG~snv~ERn~DY~tI~ 700 (1080)
T KOG0566|consen 624 QLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYH---ATSFCFVCSHLAAGQSNVEERNEDYKTIA 700 (1080)
T ss_pred hhheeeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEec---cccEEEEecccccccchHhhhhhhHHHHH
Confidence 344544 445888877777666555555543 2 34454555554 56899999999875433344655555555
Q ss_pred HHHHHHHH---HhCCCcEEEeecCC---CCCCCcchhhcccCcc
Q 021001 103 SRAQIVAE---KWGNIPVVLAGDFN---ITPQSAIYKFLSSSEL 140 (318)
Q Consensus 103 ~~l~~~~~---~~~~~PvIl~GDFN---s~P~s~~y~~L~~g~l 140 (318)
+.|. +.. .....-|+.||||| ..++.++.+.+.++.+
T Consensus 701 r~l~-Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~ 743 (1080)
T KOG0566|consen 701 RKLR-FPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDL 743 (1080)
T ss_pred Hhcc-ccCCccccCCceEEEecccceeecCCHHHHHHHHHhccH
Confidence 5543 110 01234599999999 4567788888888764
No 26
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=96.71 E-value=0.031 Score=53.40 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=40.1
Q ss_pred CcccccccCCCCCCCCCCCCC-ccccccC-------ccCcceeEEEeecCccccccccCCChhhhccCCCCCCCCCCCcc
Q 021001 206 LNSSYASVKGSPRTRGINGEP-LATSYHS-------KFFGTVDYLWYTKGLVPTRVLDTLPVDILRRTGGLPCKVRTVER 277 (318)
Q Consensus 206 l~SaY~~~~g~~~~~~~~~ep-~fTn~~~-------~f~~~lDYIfys~~~~~~~~L~~~~~~~l~~~~~lPn~~~pSDH 277 (318)
+.++|+.+.. +.+ .+|.|.. +-...+|||.+++...... .+-.-++.+..+|||
T Consensus 265 ~iDt~r~~~~--------~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n~~----------r~~~Ic~r~~~gsdh 326 (335)
T KOG1294|consen 265 LIDTYRELHK--------DQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGPNNG----------RRFYICSRPIHGSDH 326 (335)
T ss_pred ceeehhhhcC--------CccccccchhhccccccCCCCCceeEEEecCcCCCCC----------ceeeeecCccCCCCC
Confidence 5667766643 223 6777754 3457899999998754311 011135555899999
Q ss_pred hheeeEEE
Q 021001 278 VGFAISCC 285 (318)
Q Consensus 278 l~l~a~~~ 285 (318)
-|+.+.|.
T Consensus 327 ~pi~~~~~ 334 (335)
T KOG1294|consen 327 CPITLEFF 334 (335)
T ss_pred CCeeeeec
Confidence 99999875
No 27
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=96.23 E-value=0.017 Score=53.65 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=45.0
Q ss_pred ccCCcEEEEEEEEecccCCceEEEEEecccCCCCChhh-----------HHHHHHHHHHHHHHHHHHhCCCcEEEeecCC
Q 021001 56 GLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEV-----------KLGQICFLSSRAQIVAEKWGNIPVVLAGDFN 124 (318)
Q Consensus 56 ~~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~-----------R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFN 124 (318)
+|.....+.+.++.. +..|.++|+||+.+....+. |..-...++..+.... ....|+++.||||
T Consensus 64 kwSRKGfmrtrw~i~---~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~--~~~~~lF~fGDfN 138 (356)
T PTZ00312 64 GRSRKGFLLLSLRLG---TVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFI--SPSDPLFIFGDFN 138 (356)
T ss_pred CccccceEEEEEEEC---CEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhcc--CCCCcEEEeccce
Confidence 444455666666664 67899999999986421111 3333334444333322 2468899999999
Q ss_pred CCCCCc-chhhcc
Q 021001 125 ITPQSA-IYKFLS 136 (318)
Q Consensus 125 s~P~s~-~y~~L~ 136 (318)
.--+.. ..+.|.
T Consensus 139 yRld~~~~~e~L~ 151 (356)
T PTZ00312 139 VRLDGHNLLEWLK 151 (356)
T ss_pred eeeccccHHHHhc
Confidence 765533 344554
No 28
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=94.95 E-value=0.12 Score=50.62 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=34.0
Q ss_pred CceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHH--HHhCCCcEEEeecCCC
Q 021001 74 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVA--EKWGNIPVVLAGDFNI 125 (318)
Q Consensus 74 ~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~--~~~~~~PvIl~GDFNs 125 (318)
...+|++|+||..+-..-+.|..-.+.+...|.--. .-+....++.+||||.
T Consensus 164 ~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNy 217 (460)
T COG5411 164 RTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNY 217 (460)
T ss_pred cCCcEEEecchhcccccHHHHHHHHHHHHHheecCCCceecccceEEEecccCc
Confidence 457999999998765444567777777666543110 0012345999999994
No 29
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=94.06 E-value=0.095 Score=48.92 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=52.4
Q ss_pred EEEEEEEEecccCCceEEEEEecccCC----------CC-ChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 61 VAQLSAFEMRNTKSRRVLVGNIHVLYN----------PN-RGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 61 v~~~~~l~~~~~~~~~i~V~ntHL~~~----------p~-~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
..+.+.+++. ++.+-++|.||+.+ |. .+..|-.|+..++++|.+- ..++..+++.||||+.-+|
T Consensus 158 g~~~~r~~I~---~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~--~~~~~~~fVfGdfNfrLds 232 (391)
T KOG1976|consen 158 GFLLARFRIH---GKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE--GLRNDAIFVFGDFNFRLDS 232 (391)
T ss_pred cccceeEEEc---CceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh--ccCceEEEEecccccccch
Confidence 3455666664 88999999999863 21 2234888888888887543 2345689999999998876
Q ss_pred -cchhhcccCcc
Q 021001 130 -AIYKFLSSSEL 140 (318)
Q Consensus 130 -~~y~~L~~g~l 140 (318)
...+.|...++
T Consensus 233 ~s~ln~l~a~q~ 244 (391)
T KOG1976|consen 233 TSLLNYLAATQL 244 (391)
T ss_pred HHHHHHHhcCCc
Confidence 45566665543
No 30
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.39 E-value=11 Score=31.11 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=31.5
Q ss_pred CceEEEEEecccCCCCChhh-HHHHHHHHHHHHHHHHHHhCC---------CcEEEeecCCCCCCCc
Q 021001 74 SRRVLVGNIHVLYNPNRGEV-KLGQICFLSSRAQIVAEKWGN---------IPVVLAGDFNITPQSA 130 (318)
Q Consensus 74 ~~~i~V~ntHL~~~p~~~~~-R~~Q~~~l~~~l~~~~~~~~~---------~PvIl~GDFNs~P~s~ 130 (318)
+..++.+++|+..+-..... |..-...+.+...-....... .-|+..||+|.-..++
T Consensus 58 ~~~~~~v~~hl~~~~~~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~ 124 (145)
T KOG0565|consen 58 QTSFCFVISHLTSGVHKVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGP 124 (145)
T ss_pred CceEEEEEecccccchhhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCc
Confidence 67899999999875333333 333333333332211000011 2378999999876654
No 31
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=48.26 E-value=19 Score=32.72 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=34.4
Q ss_pred CceEEEEEecccCCCCCh--hh--HHHHHHHHHHHHHHHHHHhCCCcEEEeecCC
Q 021001 74 SRRVLVGNIHVLYNPNRG--EV--KLGQICFLSSRAQIVAEKWGNIPVVLAGDFN 124 (318)
Q Consensus 74 ~~~i~V~ntHL~~~p~~~--~~--R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFN 124 (318)
++.++|+-+||.+..... .+ =..|...+.+.+.++.+.+...-+|+.||+=
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~K 74 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLK 74 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 789999999998742110 01 1236666777777666655556699999985
No 32
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=44.59 E-value=43 Score=30.12 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=31.4
Q ss_pred CceEEEEEecccCCCC---Chh-hHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCC
Q 021001 74 SRRVLVGNIHVLYNPN---RGE-VKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNI 125 (318)
Q Consensus 74 ~~~i~V~ntHL~~~p~---~~~-~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs 125 (318)
++.++|+-+||..... .+- .-..|....++++.++.+...-.-+|++||+-.
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h 70 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKH 70 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCcccc
Confidence 5688999999976211 000 112355666677666554333345999999763
No 33
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=42.09 E-value=45 Score=31.40 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=25.6
Q ss_pred eEEEEEecccCCCCChhhHHHHHHHHHHHHHH-HHHHhCCCc--EEEeecCCCCCC
Q 021001 76 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQI-VAEKWGNIP--VVLAGDFNITPQ 128 (318)
Q Consensus 76 ~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~-~~~~~~~~P--vIl~GDFNs~P~ 128 (318)
-+++..+||+- ..=+..++.+++..+. +.+ ...| +|+||+|.+.|-
T Consensus 30 ~VilSDV~LD~-----p~tl~~L~kvf~~y~~~~~~--~~~P~~fVL~GnF~S~p~ 78 (291)
T PTZ00235 30 WIIMHDVYLDS-----PYTFEVLDKMLSLYVNTYPE--NELPVGFIFMGDFISLKF 78 (291)
T ss_pred EEEEEeeccCC-----HHHHHHHHHHHHHhhccCcc--cCCCeEEEEecCccCCcc
Confidence 45566677732 1223445555554421 111 1345 699999999983
No 34
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=36.49 E-value=51 Score=27.63 Aligned_cols=49 Identities=16% Similarity=-0.008 Sum_probs=24.1
Q ss_pred EEEEEecccCCCCChh-hHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCC
Q 021001 77 VLVGNIHVLYNPNRGE-VKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNI 125 (318)
Q Consensus 77 i~V~ntHL~~~p~~~~-~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs 125 (318)
++|..+||........ .|+.+-..+.+..++........-+|++||+=.
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~ 50 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFD 50 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 3577899854322111 133333334433333333222334899999843
No 35
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=34.05 E-value=39 Score=32.81 Aligned_cols=50 Identities=30% Similarity=0.466 Sum_probs=32.3
Q ss_pred eEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhC-CCcEEEeecCCCCCCCc
Q 021001 76 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWG-NIPVVLAGDFNITPQSA 130 (318)
Q Consensus 76 ~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~-~~PvIl~GDFNs~P~s~ 130 (318)
...|.--|-+.|...+.+|...+. ++...++++ ..-+|..||||.+|.+-
T Consensus 43 ~ktvgfFHPYCNAGGGGErVLW~A-----vr~~q~k~~n~~~viYsGD~n~t~~~I 93 (465)
T KOG1387|consen 43 VKTVGFFHPYCNAGGGGERVLWKA-----VRITQRKFPNNVIVIYSGDFNVTPENI 93 (465)
T ss_pred ceEEEEecccccCCCCcceehhHH-----HHHHHHhCCCceEEEEeCCCCCCHHHH
Confidence 455666677777666677876542 333333332 45689999999999753
No 36
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=29.72 E-value=91 Score=23.85 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEee
Q 021001 95 LGQICFLSSRAQIVAEKWGNIPVVLAG 121 (318)
Q Consensus 95 ~~Q~~~l~~~l~~~~~~~~~~PvIl~G 121 (318)
+.++..+++++..+.....+.|+|++|
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~piilv~ 115 (119)
T PF08477_consen 89 LEYLSQLLKWLKNIRKRDKNIPIILVG 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHccCCCCCEEEEE
Confidence 455566677777766544579999988
No 37
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=29.53 E-value=40 Score=28.53 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=25.0
Q ss_pred EEEEecccCCCCC---h-hhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCC
Q 021001 78 LVGNIHVLYNPNR---G-EVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNI 125 (318)
Q Consensus 78 ~V~ntHL~~~p~~---~-~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs 125 (318)
+|+-+||...... + .....|.+..++++.++.+.....-+|++||+=.
T Consensus 2 ~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~ 53 (172)
T cd07391 2 VVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKH 53 (172)
T ss_pred EeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 5677898763210 0 1122333344555544443323345999999753
No 38
>PHA02546 47 endonuclease subunit; Provisional
Probab=26.83 E-value=1.5e+02 Score=28.18 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=24.9
Q ss_pred eEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCC
Q 021001 76 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNIT 126 (318)
Q Consensus 76 ~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~ 126 (318)
.+.+.-.||...+.....+..|...+-+.++...+. .-.-+|++||+=..
T Consensus 3 ilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~-~vD~VliaGDlfD~ 52 (340)
T PHA02546 3 ILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAH-GITTWIQLGDTFDV 52 (340)
T ss_pred EEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHc-CCCEEEECCcccCC
Confidence 466777888753322222223333333333333221 22348999998544
No 39
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=25.73 E-value=1e+02 Score=27.49 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=24.7
Q ss_pred EEEEEecccCCC-----CChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCC
Q 021001 77 VLVGNIHVLYNP-----NRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNIT 126 (318)
Q Consensus 77 i~V~ntHL~~~p-----~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~ 126 (318)
|.+.-.||...+ ..++....-++.+.+.++++.. ..--+|++||+-..
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~--~~D~viiaGDl~~~ 54 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVA--PEDIVLIPGDISWA 54 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCC--CCCEEEEcCCCccC
Confidence 567778987543 2232222233333334333321 12238999999743
No 40
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=24.47 E-value=1.4e+02 Score=25.74 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=24.2
Q ss_pred eEEEEEecccCCCCChh--hHHHHHHHHHHHH-HHHHHHhCCCcEEEeecCCCCC
Q 021001 76 RVLVGNIHVLYNPNRGE--VKLGQICFLSSRA-QIVAEKWGNIPVVLAGDFNITP 127 (318)
Q Consensus 76 ~i~V~ntHL~~~p~~~~--~R~~Q~~~l~~~l-~~~~~~~~~~PvIl~GDFNs~P 127 (318)
.+.+.-+||........ .|.......++++ +.+.+. .-.-+|++||+=...
T Consensus 2 i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~ 55 (223)
T cd00840 2 FLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSN 55 (223)
T ss_pred eEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCC
Confidence 45677788865321111 1233222333333 333221 122389999996543
No 41
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=21.34 E-value=1.1e+02 Score=25.61 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhCCCc---EEEeecCCCCCCC
Q 021001 99 CFLSSRAQIVAEKWGNIP---VVLAGDFNITPQS 129 (318)
Q Consensus 99 ~~l~~~l~~~~~~~~~~P---vIl~GDFNs~P~s 129 (318)
..+.++++++.++ ..| +|+||||-+...+
T Consensus 11 ~~~~~kv~~~~~k--~gpFd~~ic~Gdff~~~~~ 42 (150)
T cd07380 11 KALFEKVNTINKK--KGPFDALLCVGDFFGDDED 42 (150)
T ss_pred HHHHHHHHHHhcc--cCCeeEEEEecCccCCccc
Confidence 3445555554332 234 7999999987654
No 42
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=20.02 E-value=70 Score=30.82 Aligned_cols=17 Identities=41% Similarity=0.698 Sum_probs=13.6
Q ss_pred HhCCCcEEEeecCCCCC
Q 021001 111 KWGNIPVVLAGDFNITP 127 (318)
Q Consensus 111 ~~~~~PvIl~GDFNs~P 127 (318)
.+++..||++|||---|
T Consensus 138 pFGG~~vil~GDf~Qlp 154 (364)
T PF05970_consen 138 PFGGKQVILFGDFLQLP 154 (364)
T ss_pred hcCcceEEeehhhhhcC
Confidence 45678899999998654
Done!