Query 021001
Match_columns 318
No_of_seqs 218 out of 1642
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 100.0 4.6E-52 1.6E-56 401.8 15.7 253 3-294 75-389 (398)
2 4b8c_D Glucose-repressible alc 100.0 1.1E-39 3.7E-44 337.6 1.5 240 2-293 437-724 (727)
3 3l1w_A Uncharacterized protein 99.9 2.2E-25 7.6E-30 200.5 16.5 129 3-138 35-182 (257)
4 3g6s_A Putative endonuclease/e 99.9 1.2E-25 4.1E-30 203.6 14.4 132 2-139 37-189 (267)
5 4gz1_A Tyrosyl-DNA phosphodies 99.9 7.5E-25 2.6E-29 194.5 11.9 126 3-137 40-173 (256)
6 4f1h_A Tyrosyl-DNA phosphodies 99.9 1.9E-24 6.5E-29 189.3 11.8 127 3-138 34-168 (250)
7 3mpr_A Putative endonuclease/e 99.9 3.9E-24 1.3E-28 197.8 12.9 134 2-139 42-195 (298)
8 4gew_A 5'-tyrosyl-DNA phosphod 99.9 6.1E-23 2.1E-27 196.0 15.8 123 2-130 149-279 (362)
9 4fva_A 5'-tyrosyl-DNA phosphod 99.9 9.4E-23 3.2E-27 181.2 15.6 124 2-131 43-174 (256)
10 3teb_A Endonuclease/exonucleas 99.9 1.1E-22 3.6E-27 182.9 8.7 125 3-139 34-195 (266)
11 1zwx_A SMCL, sphingomyelinase- 99.9 3.6E-22 1.2E-26 183.5 9.8 102 29-137 99-210 (301)
12 2ddr_A Sphingomyelin phosphodi 99.8 1.8E-20 6.1E-25 172.4 11.4 129 2-137 44-216 (306)
13 1ako_A Exonuclease III; AP-end 99.8 3.8E-19 1.3E-23 159.8 8.9 121 3-134 26-163 (268)
14 3i41_A Beta-hemolysin; beta to 99.8 7.2E-19 2.5E-23 164.3 10.6 101 31-138 120-230 (317)
15 2jc5_A Exodeoxyribonuclease; h 99.8 5.9E-19 2E-23 157.7 8.3 115 2-129 27-156 (259)
16 2a40_B Deoxyribonuclease-1; WA 99.7 1.7E-17 5.7E-22 150.2 12.6 126 2-134 30-183 (260)
17 2jc4_A Exodeoxyribonuclease II 99.7 1.4E-17 4.6E-22 148.6 9.7 113 2-130 25-154 (256)
18 2o3h_A DNA-(apurinic or apyrim 99.7 2.5E-17 8.5E-22 150.1 9.8 114 3-129 55-184 (285)
19 1hd7_A DNA-(apurinic or apyrim 99.7 2.5E-17 8.6E-22 153.6 9.1 114 3-129 88-217 (318)
20 3g91_A MTH0212, exodeoxyribonu 99.7 7.5E-17 2.6E-21 145.7 11.5 116 2-129 29-158 (265)
21 2voa_A AF_EXO, XTHA, exodeoxyr 99.7 8.5E-17 2.9E-21 143.9 9.3 111 3-129 27-153 (257)
22 2j63_A AP-endonuclease; base e 99.7 1.4E-16 4.9E-21 156.7 11.2 122 3-129 179-362 (467)
23 1vyb_A ORF2 contains A reverse 99.7 2.1E-16 7.2E-21 139.1 10.7 109 2-129 34-152 (238)
24 1wdu_A TRAS1 ORF2P; four-layer 99.7 4E-16 1.4E-20 139.4 10.8 109 2-128 44-160 (245)
25 2imq_X Salivary nitrophorin; f 99.5 7.9E-15 2.7E-19 135.2 3.8 131 3-139 36-191 (282)
26 2f1n_A CDT B, cytolethal diste 99.4 2.6E-13 9E-18 122.3 8.3 115 4-136 48-199 (262)
27 1sr4_B CDT B, cytolethal diste 99.4 2.1E-12 7.2E-17 117.2 10.2 91 27-129 92-184 (261)
28 2ei9_A Non-LTR retrotransposon 99.4 2.1E-12 7.3E-17 116.0 9.7 102 2-128 32-133 (240)
29 1i9z_A Synaptojanin, phosphati 99.3 2.1E-11 7.1E-16 115.5 12.9 107 29-139 111-227 (347)
30 2xsw_A 72 kDa inositol polypho 98.9 1.5E-08 5.2E-13 96.2 12.0 123 3-130 57-212 (357)
31 4a9c_A Phosphatidylinositol-3, 97.6 0.00012 4.1E-09 68.0 7.6 115 18-138 80-210 (316)
32 3mtc_A Type II inositol-1,4,5- 97.0 0.0013 4.4E-08 61.0 7.3 96 29-128 88-196 (313)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=4.6e-52 Score=401.83 Aligned_cols=253 Identities=25% Similarity=0.435 Sum_probs=195.3
Q ss_pred ccccccHHHHhhc---------C--CCCc-EEEEecC---------CCceeEEEEEeCCceeeeeeeEEeccCCc-----
Q 021001 3 PSQKVNMPRVDRI---------E--PGYY-LYATAHW---------DNVDGCAMFWKADKFRLLEQTSIEFKEFG----- 56 (318)
Q Consensus 3 ~~~ivclqEv~~~---------~--~GY~-~y~~r~g---------~~~~G~AIf~r~~rf~l~~~~~i~~~~~~----- 56 (318)
.+|||||||++.. + .||. +|..+.. ...+|||||||+++|+++++..++|++..
T Consensus 75 ~pDIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~ 154 (398)
T 3ngq_A 75 DADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSD 154 (398)
T ss_dssp CCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCT
T ss_pred CCCEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccc
Confidence 6899999999742 1 5998 7754321 36799999999999999999999997531
Q ss_pred ----------cCCcEEEEEEEEeccc------------CCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHh--
Q 021001 57 ----------LRENVAQLSAFEMRNT------------KSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKW-- 112 (318)
Q Consensus 57 ----------~~~~v~~~~~l~~~~~------------~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~-- 112 (318)
.++|+++++.|+.+.+ .++.|+|+||||+|+|...++|+.|++.|+++++++.++.
T Consensus 155 ~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~ 234 (398)
T 3ngq_A 155 GSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASS 234 (398)
T ss_dssp TCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC---
T ss_pred cchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1478999999998741 2678999999999999989999999999999999875321
Q ss_pred ---------CCCcEEEeecCCCCCCCcchhhcccCcccccccccccccCCccccccccccccccccCCcccccCCCCCCC
Q 021001 113 ---------GNIPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGW 183 (318)
Q Consensus 113 ---------~~~PvIl~GDFNs~P~s~~y~~L~~g~l~~~~~d~~~~sg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (318)
...|+|||||||+.|+|++|++|++|.+..+|.|+...... .|... | ++
T Consensus 235 ~~~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~y~-~~~~~--~-------~~------------ 292 (398)
T 3ngq_A 235 RPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYN-ECLMN--F-------SC------------ 292 (398)
T ss_dssp ----------CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC------GGGG--G-------CC------------
T ss_pred ccccccccCCCCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcccc-ccccc--c-------cc------------
Confidence 35799999999999999999999999998888776432100 01000 0 00
Q ss_pred ChHHHHhhhcCcccccccCCCCCcccccccCCCCCCCCCCCCCccccccCccCcceeEEEeecC-ccccccccCCChhhh
Q 021001 184 TDEEVKVATGNAQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKG-LVPTRVLDTLPVDIL 262 (318)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~h~~~l~SaY~~~~g~~~~~~~~~ep~fTn~~~~f~~~lDYIfys~~-~~~~~~L~~~~~~~l 262 (318)
..+ .......+.|+|+|+|||+. +||+||||+.+|.||||||||+++ +.++++|.+++++++
T Consensus 293 ~~~------~~~~~~~~~h~~~L~SAy~~-----------~~~~fTnyt~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l 355 (398)
T 3ngq_A 293 NGK------NGSSEGRITHGFQLKSAYEN-----------NLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWL 355 (398)
T ss_dssp -------------CCEEECSCCEEETTTT-----------TSSSCSEECSSCEECCEEEEEETTTEEEEEEECCCCHHHH
T ss_pred ccc------ccccccccccCccccccccC-----------CCCCceeccCCcCCceeEEEEeCCceEEEeecCCCCHHHh
Confidence 000 00012358999999999975 489999999999999999999985 667899999999887
Q ss_pred c--cCCCCCCCCCCCcchheeeEEEEEecCCCCC
Q 021001 263 R--RTGGLPCKVRTVERVGFAISCCMTQKLHESV 294 (318)
Q Consensus 263 ~--~~~~lPn~~~pSDHl~l~a~~~~~~~~~~~~ 294 (318)
. +..||||..||||||||+|+|+|.++..+..
T Consensus 356 ~~~~~~glP~~~~PSDHi~l~a~f~~~~~~~~~~ 389 (398)
T 3ngq_A 356 VENNITGCPHPHIPSDHFSLLTQLELHPPLLPLV 389 (398)
T ss_dssp HHTTCCSSCBTTBCSSBCCEEEEEEECCC-----
T ss_pred ccccccCCCCCCCCCcchheeEEEEEccCCCCCC
Confidence 5 5789999999999999999999988754443
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-39 Score=337.64 Aligned_cols=240 Identities=21% Similarity=0.392 Sum_probs=56.7
Q ss_pred CccccccHHHHhhc---------C--CCCc-EEEEe---------cCCCceeEEEEEeCCceeeeeeeEEeccCCc----
Q 021001 2 EPSQKVNMPRVDRI---------E--PGYY-LYATA---------HWDNVDGCAMFWKADKFRLLEQTSIEFKEFG---- 56 (318)
Q Consensus 2 ~~~~ivclqEv~~~---------~--~GY~-~y~~r---------~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~---- 56 (318)
..+||||||||+.. + .||. +|..+ .+...+|||||||++||++++...++|+...
T Consensus 437 ~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~ 516 (727)
T 4b8c_D 437 YDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHK 516 (727)
T ss_dssp SCCSSEEEC-CCHHHHHTTTCC-------CEEC----------------CCCCEEEC-----------------------
T ss_pred cCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhch
Confidence 36899999999852 1 5888 66322 2457899999999999999999998885421
Q ss_pred -------------cCCcEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHH---------hCC
Q 021001 57 -------------LRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEK---------WGN 114 (318)
Q Consensus 57 -------------~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~---------~~~ 114 (318)
.++|+++++.|+.+.+ |+.|+|+||||+|.|..+++|+.|+..++++++++.+. ..+
T Consensus 517 ~~~~~~~~~~r~~~~~~i~~~~~l~~~~~-g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~ 595 (727)
T 4b8c_D 517 KFQRTEDYLNRAMNKDNVALFLKLQHIPS-GDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKK 595 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccHHHHhhcccCCcEEEEEEEeecCC-CceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCC
Confidence 1357999999987765 88999999999998887889999999999999877432 136
Q ss_pred CcEEEeecCCCCCCCcchhhcccCcccccccccccccCCccccccccccccccccCCcccccCCCCCCCChHHHHhhhcC
Q 021001 115 IPVVLAGDFNITPQSAIYKFLSSSELNIKSYDRRDLSGQRSCHLVQVFEVKKEIINPFAVMDRLLPNGWTDEEVKVATGN 194 (318)
Q Consensus 115 ~PvIl~GDFNs~P~s~~y~~L~~g~l~~~~~d~~~~sg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (318)
.|+|||||||+.|++.+|++|..|.+. .+.|. .+. .+| . ++
T Consensus 596 ~pvIl~GDFNs~P~s~~~~~l~~~~v~-~~~d~---~~~-------~~~--------------~----~~---------- 636 (727)
T 4b8c_D 596 FPVLICGDFNSYINSAVYELINTGRVQ-IHQEG---NGR-------DFG--------------Y----MS---------- 636 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEecccCCCCCCcceEeeecCCcC-cchhh---ccc-------ccc--------------c----cc----------
Confidence 799999999999999999999998765 22221 000 000 0 00
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCccccccCccCcceeEEEeecCc-cccccccCCChhhhccCCCCCCCCC
Q 021001 195 AQCYLAVHPLKLNSSYASVKGSPRTRGINGEPLATSYHSKFFGTVDYLWYTKGL-VPTRVLDTLPVDILRRTGGLPCKVR 273 (318)
Q Consensus 195 ~~~~~~~h~~~l~SaY~~~~g~~~~~~~~~ep~fTn~~~~f~~~lDYIfys~~~-~~~~~L~~~~~~~l~~~~~lPn~~~ 273 (318)
...+.|++++.|||... ++|.||+|+.+|.++|||||||++. .+++++..+..+.+.++.++|+..|
T Consensus 637 --~~~~~~~~~l~say~~~----------~~~~~T~~~~~~~~~LDyI~~S~~~l~~~~~~~~~~~~~~~~~~~~P~~~~ 704 (727)
T 4b8c_D 637 --EKNFSHNLALKSSYNCI----------GELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEVDPEYVSKFIGFPNDKF 704 (727)
T ss_dssp -------------------------------CCCSBCCSSCCBCC-----------------CCCHHHHTTCSSSSBTTB
T ss_pred --cccccccccccchhhcC----------CCCccccccCccCCeeeeEEEcCCceeEeeccCCCCHHHhcccCCCCCCCC
Confidence 12367899999999753 5899999999999999999999864 3567888888888888899999999
Q ss_pred CCcchheeeEEEEEecCCCC
Q 021001 274 TVERVGFAISCCMTQKLHES 293 (318)
Q Consensus 274 pSDHl~l~a~~~~~~~~~~~ 293 (318)
||||+||+|+|++.++.+++
T Consensus 705 pSDH~pV~a~f~l~~~~~~~ 724 (727)
T 4b8c_D 705 PSDHIPLLARFEFMKTNTGS 724 (727)
T ss_dssp CSSBCC--------------
T ss_pred CCCceeEEEEEEEecCCCCc
Confidence 99999999999998776544
No 3
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.93 E-value=2.2e-25 Score=200.49 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=103.9
Q ss_pred ccccccHHHHhhc-------CCCCc-EEEEec-CCCceeEEEEEeCCceeeeeeeEEeccCC----c-----cCCcEEEE
Q 021001 3 PSQKVNMPRVDRI-------EPGYY-LYATAH-WDNVDGCAMFWKADKFRLLEQTSIEFKEF----G-----LRENVAQL 64 (318)
Q Consensus 3 ~~~ivclqEv~~~-------~~GY~-~y~~r~-g~~~~G~AIf~r~~rf~l~~~~~i~~~~~----~-----~~~~v~~~ 64 (318)
.+|||||||++.. ..||. +...+. +...+|+|||||+++|+++....++++.. + ...|.+++
T Consensus 35 ~~DIv~LQEv~~~~~~~l~~~l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~ 114 (257)
T 3l1w_A 35 DWSLCCIQEVRPNQVRDLKAYTTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALW 114 (257)
T ss_dssp CCSEEEEEEECHHHHHHHHHHSSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccccccccceeEE
Confidence 5899999998743 15998 434443 25789999999999999999999988742 1 23688999
Q ss_pred EEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHH-HHHHhCCCcEEEeecCCCCCCCcchhhcccC
Q 021001 65 SAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQI-VAEKWGNIPVVLAGDFNITPQSAIYKFLSSS 138 (318)
Q Consensus 65 ~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~-~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~g 138 (318)
+.++...+ ++.+.|+||||.+. ....|..|+..|++.+++ +.. . |+|+|||||+.|++..|+.|.+|
T Consensus 115 ~~~~~~~~-g~~~~v~~~Hl~~~--~~~~r~~q~~~l~~~i~~~~~~---~-pvil~GDfN~~~~~~~~~~l~~~ 182 (257)
T 3l1w_A 115 GLFKETTQ-NTPFLVINVHLDHI--SAHARLAGMTVILEELHDKIAQ---Y-PTLLMGDFNAESGEEVHQLVQKK 182 (257)
T ss_dssp EEEEETTC-SSCEEEEEEECCSS--CHHHHHHHHHHHHHHTHHHHHH---S-CEEEEEECCCCTTSHHHHHHTTT
T ss_pred EEEEEcCC-CCEEEEEEeCCCCC--CHHHHHHHHHHHHHHHHHHcCC---C-CEEEEeeCCCCCCcHHHHHhhhh
Confidence 99987644 78999999999773 356799999999999883 433 4 99999999999999999998874
No 4
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.93 E-value=1.2e-25 Score=203.60 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=105.5
Q ss_pred CccccccHHHHhhc--------CCCCcEEE-Eec-C-CCceeEEEEEeCCceeeeeeeEEeccCCc----------cCCc
Q 021001 2 EPSQKVNMPRVDRI--------EPGYYLYA-TAH-W-DNVDGCAMFWKADKFRLLEQTSIEFKEFG----------LREN 60 (318)
Q Consensus 2 ~~~~ivclqEv~~~--------~~GY~~y~-~r~-g-~~~~G~AIf~r~~rf~l~~~~~i~~~~~~----------~~~~ 60 (318)
..+|||||||++.. +.||.++. .+. + ..++|+|||||++||+++....++++... ...|
T Consensus 37 ~~~DIv~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R 116 (267)
T 3g6s_A 37 HELDIVGMQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVR 116 (267)
T ss_dssp TTCSEEEEESBCHHHHHHHHHHCTTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCC
T ss_pred cCCCEEEEecCCHHHHHHHHHhccCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcc
Confidence 36899999998742 37888443 332 2 35677999999999999999998886431 1358
Q ss_pred EEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhcccCc
Q 021001 61 VAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSE 139 (318)
Q Consensus 61 v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~g~ 139 (318)
+++++.++.... ++.+.|+||||.+. ....|..|++.|++.++++.. +.|+|+|||||+.|.+.+|+.|.+..
T Consensus 117 ~~~~~~~~~~~~-~~~~~v~~~Hl~~~--~~~~R~~q~~~l~~~l~~~~~---~~pvIl~GDfN~~~~~~~~~~l~~~~ 189 (267)
T 3g6s_A 117 IATWAKFKDKAT-GKIFMAVNTHFDHV--GEEARRQSALLIIRKIKEIVG---ERPAVVTGDFNVTDASDAYETITTNE 189 (267)
T ss_dssp EEEEEEEEETTT-CCEEEEEEEECCSS--CHHHHHHHHHHHHHHHHHHTT---TSCEEEEEECSSCTTSHHHHHHHSSS
T ss_pred eEEEEEEEEcCC-CCEEEEEEeCCCCC--CHHHHHHHHHHHHHHHHHhcC---CCCEEEEeECCCCCCCHHHHHhhcCC
Confidence 899999987654 88999999999763 356799999999999887643 68999999999999999999998753
No 5
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.92 E-value=7.5e-25 Score=194.54 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=91.6
Q ss_pred ccccccHHHHhhcC--------CCCcEEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccCC
Q 021001 3 PSQKVNMPRVDRIE--------PGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKS 74 (318)
Q Consensus 3 ~~~ivclqEv~~~~--------~GY~~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~ 74 (318)
++|||||||+.... .+|.++. .+....|++++++++++.+.......+.... ..+.++.+.+.. ++
T Consensus 40 ~pDIi~LQEv~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~ 113 (256)
T 4gz1_A 40 SPDVVFLQEVIPPYCAYLKKRAASYTIIT--GNEEGYFTAILLKKGRVKFKSQEIIPFPNTK-MMRNLLCVNVSL---GG 113 (256)
T ss_dssp CCSEEEEEEECHHHHHHHHHHCTTEEEEE--SCSSSSEEEEEEETTTEEEEEEEEEECTTCS-SCCEEEEEEEEE---TT
T ss_pred CCCEEEEEcCCHHHHHHHHhhccccceee--ccccCCceEEEEEeccccceecccccCCccc-ccceEEEEEEEe---CC
Confidence 68999999986431 3333222 2346789999999999999888777666543 234445555554 27
Q ss_pred ceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhccc
Q 021001 75 RRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSS 137 (318)
Q Consensus 75 ~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~ 137 (318)
+.+.|+||||.+.+.....|..|+..+++.+++.. .+.|+|+|||||+.|.+..+..+..
T Consensus 114 ~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~~~~---~~~pvIl~GDfN~~~~~~~~~~~~~ 173 (256)
T 4gz1_A 114 NEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAP---DSTTVIFAGDTNLRDQEVIKCGGLP 173 (256)
T ss_dssp EEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHSC---TTSEEEEEEECCCCHHHHHHHTCSC
T ss_pred EEEEEEeecccccccchhhhhHHHHHHhhhhhhcc---CcceEEEeCccCCCcchhhhhhhcc
Confidence 89999999998866556679999999988876542 3679999999999988766655443
No 6
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.91 E-value=1.9e-24 Score=189.28 Aligned_cols=127 Identities=12% Similarity=0.117 Sum_probs=92.4
Q ss_pred ccccccHHHHhhcC-------CCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccCC
Q 021001 3 PSQKVNMPRVDRIE-------PGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKS 74 (318)
Q Consensus 3 ~~~ivclqEv~~~~-------~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~ 74 (318)
++|||||||++... .++. .+. .+....|.+++++++++++++...+.+.... ..+.++.+.+.. . +
T Consensus 34 ~pDIi~LQEv~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~ 107 (250)
T 4f1h_A 34 TPDVVFLQELIPAYVQYLKKRAVSYLFFE--GSDDGYFTGIMLRKSRVKFLESEIICFPTTQ-MMRNLLIAQVTF--S-G 107 (250)
T ss_dssp CCSEEEEEEECHHHHHHHHHHCTTEEEEE--SCSSSSEEEEEEETTTCEEEEEEEEECTTCS-SCCEEEEEEEEE--T-T
T ss_pred CCCEEEEEeCCHHHHHHHHHhccCceeec--ccccccCceeEEeeccccceecccccccCcc-ccceEEEEEEec--C-C
Confidence 68999999986432 3333 332 2335677888899999999999888877653 234445555444 2 7
Q ss_pred ceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhcccC
Q 021001 75 RRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSS 138 (318)
Q Consensus 75 ~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~g 138 (318)
+.+.|+|+|+.+.+.....|..|+..+++.+++.. ...|+|+|||||+.|.+..+..+...
T Consensus 108 ~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~~~~---~~~pvIl~GDfN~~~~~~~~~~~~~~ 168 (250)
T 4f1h_A 108 QKLYLMTSHLESCKNQSQERTKQLRVVLQKIKEAP---EDAIVIFAGDTNLRDAEVANVGGLPA 168 (250)
T ss_dssp EEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHSC---TTEEEEEEEECCCCHHHHHTTTSSCT
T ss_pred cEEEEeccccccccccHHHHHHHHHHHHHHHHhcC---CCCCEEEEEecCCCCcchhhhhhccc
Confidence 89999999998866656779999999988876542 36799999999999887666555443
No 7
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.9e-24 Score=197.78 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=104.8
Q ss_pred CccccccHHHHhhc--------CCCCcEEE-Eec-C-CCceeEEEEEeCCceeeeeeeEEeccCCc------c---CCcE
Q 021001 2 EPSQKVNMPRVDRI--------EPGYYLYA-TAH-W-DNVDGCAMFWKADKFRLLEQTSIEFKEFG------L---RENV 61 (318)
Q Consensus 2 ~~~~ivclqEv~~~--------~~GY~~y~-~r~-g-~~~~G~AIf~r~~rf~l~~~~~i~~~~~~------~---~~~v 61 (318)
..+|||||||+... +++|.++. .+. | ..++++|||||++||+++....++++... + ..|+
T Consensus 42 ~~~DIv~LQEv~~~~~~~l~~~l~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~ 121 (298)
T 3mpr_A 42 HDFDIFGTQECFLHQLKDMKEALPGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRI 121 (298)
T ss_dssp TTCSEEEEESBCHHHHHHHHHHSTTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCE
T ss_pred cCCCEEEEeCCCHHHHHHHHHhCCCCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCce
Confidence 36899999998732 46787443 232 2 35677999999999999999999886421 1 2588
Q ss_pred EEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhcccCc
Q 021001 62 AQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSSE 139 (318)
Q Consensus 62 ~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~g~ 139 (318)
++++.++.+.+ ++.|.|+||||.+ .....|..|++.+++.++++... .+.|+|||||||+.|.+.+|+.|.++.
T Consensus 122 ~~~~~~~~~~~-g~~~~v~~~Hl~~--~~~~~R~~q~~~l~~~i~~~~~~-~~~pvIl~GDfN~~~~~~~~~~l~~~g 195 (298)
T 3mpr_A 122 CSWGHFKCKDT-GFEFLFFNLHMDH--IGKKARVESAFLVQEKMKELGRG-KNLPAILTGDFNVDQTHQSYDAFVSKG 195 (298)
T ss_dssp EEEEEEEETTT-CCEEEEEEEECCS--SCHHHHHHHHHHHHHHHHHTTTT-SCCCEEEEEECSSCTTSHHHHHHHTTS
T ss_pred eEEEEEEEcCC-CCEEEEEEecCCC--CCHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCHHHHHHhcCC
Confidence 99999987554 8899999999975 34567999999999988776421 267999999999999999999998753
No 8
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.89 E-value=6.1e-23 Score=196.05 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=91.8
Q ss_pred CccccccHHHHhhc--------CCCCcEEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccC
Q 021001 2 EPSQKVNMPRVDRI--------EPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTK 73 (318)
Q Consensus 2 ~~~~ivclqEv~~~--------~~GY~~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~ 73 (318)
+++|||||||+... +.+|.+|.. .....+|+|||+|+ ++++.....+.+.... ..+.++++.++..
T Consensus 149 ~~PDIV~LQEv~~~~~~~l~~~~~~y~~~~~-~~~~~~G~aIlsk~-~i~~~~~~~~~~~~~~-~~r~~l~~~i~~~--- 222 (362)
T 4gew_A 149 VNPDILFLQEVVDRDLAPIDKLQSLYKIYYS-NKGCQYYTAILVSK-MFDVEKHDVIHFQNSG-MYRTLQILEGSIG--- 222 (362)
T ss_dssp HCCSEEEEEEECSTTCHHHHGGGGTEEEEES-STTSSSEEEEEEET-TEEEEEEEEEECTTCS-SCCEEEEEEEEET---
T ss_pred cCCCEEEEEcCChhHhHHHHHhcCCceEEeC-CCCCCceEEEEEec-cCccccccccCCCCCc-ccceEEEEEEEEC---
Confidence 46899999998643 256664432 23467899999985 6788877777776543 3456666776653
Q ss_pred CceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCc
Q 021001 74 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSA 130 (318)
Q Consensus 74 ~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~ 130 (318)
++.|.|+||||.+.......|..|+..+++.+..+.....+.|+|+|||||..|.+.
T Consensus 223 g~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~ 279 (362)
T 4gew_A 223 GLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEV 279 (362)
T ss_dssp TEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGC
T ss_pred CEEEEEEEecCCccccchhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCccc
Confidence 789999999998754445669999999998887765544578999999999988764
No 9
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.89 E-value=9.4e-23 Score=181.21 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=89.7
Q ss_pred CccccccHHHHhhcC-------CCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccC
Q 021001 2 EPSQKVNMPRVDRIE-------PGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTK 73 (318)
Q Consensus 2 ~~~~ivclqEv~~~~-------~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~ 73 (318)
+++|||||||+.... .+|. ++.. .....+|+||++++ ++.+.....+.+.... ..+.++.+.++..
T Consensus 43 ~~pDIi~LQEv~~~~~~~l~~~~~~~~~~~~-~~~~~~g~~il~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 116 (256)
T 4fva_A 43 VNPDILFLQEVVDRDLAPIDKLQSLYKIYYS-NKGCQYYTAILVSK-MFDVEKHDVIHFQNSG-MYRTLQILEGSIG--- 116 (256)
T ss_dssp HCCSEEEEEEECSTTCHHHHGGGGTEEEEES-STTSSSEEEEEEET-TCEEEEEEEEECTTCS-SCCEEEEEEEEET---
T ss_pred cCCCEEEEEecChhHhHHHHHhcCCceEeec-CCCCCcceEEEEee-cccceecccccCCCCc-ccceeEEEEEEeC---
Confidence 368999999986442 3333 3332 23567899999985 6778877778776643 2445555666542
Q ss_pred CceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcc
Q 021001 74 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAI 131 (318)
Q Consensus 74 ~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~ 131 (318)
++.+.|+||||.+.......|..|+..+++.+..+.....+.|+|+|||||+.|.+..
T Consensus 117 g~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~ 174 (256)
T 4fva_A 117 GLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVS 174 (256)
T ss_dssp TEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCC
T ss_pred CeEEEEEEecCCCCCcchHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhh
Confidence 7899999999987544456688999988888877665556789999999999886643
No 10
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.87 E-value=1.1e-22 Score=182.93 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=94.2
Q ss_pred ccccccHHHHhh----------------------cC--C---CCc-EEEE---ecCCCceeEEEEEeCCceeeeeeeEEe
Q 021001 3 PSQKVNMPRVDR----------------------IE--P---GYY-LYAT---AHWDNVDGCAMFWKADKFRLLEQTSIE 51 (318)
Q Consensus 3 ~~~ivclqEv~~----------------------~~--~---GY~-~y~~---r~g~~~~G~AIf~r~~rf~l~~~~~i~ 51 (318)
.+|||||||++. .+ . +|. ++.. ......+|+||| +|++++....+.
T Consensus 34 ~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~ail---sr~~~~~~~~~~ 110 (266)
T 3teb_A 34 QYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVI---TRHKIKAEDEFY 110 (266)
T ss_dssp TCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEEEEECSTTEEEEEEEE---ESSCCSEEEEEE
T ss_pred CCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEeccccCccccCCeEEEE---ECceecCceeEE
Confidence 689999999941 11 2 476 3321 223456799999 678888888888
Q ss_pred ccCC----ccCCcEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCC
Q 021001 52 FKEF----GLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITP 127 (318)
Q Consensus 52 ~~~~----~~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P 127 (318)
++.. ++..|.++.+.++.. ++.+.|+||||.+.+.....|..|+..|++.+++ ..|+|+|||||+.|
T Consensus 111 ~~~~~~~~~~~~r~~~~~~~~~~---~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~------~~~~il~GDfN~~~ 181 (266)
T 3teb_A 111 CTFAQSVRTISARRIVSITINYE---GQDIEFYSCHMNLPNCETEDMGKNIQTILNRTQN------SNLKILMGDFNTDA 181 (266)
T ss_dssp CSSCCCTTCTTCCEEEEEEEEET---TEEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCS------CCEEEEEEECCCCT
T ss_pred eCCCCCCCCcccceEEEEEEEeC---CeEEEEEEecCCCccCChHHHHHHHHHHHHHHhc------CCcEEEEeECCCCC
Confidence 8753 234577777777753 7899999999988654456799999998877654 57999999999999
Q ss_pred --CCcchhhcccCc
Q 021001 128 --QSAIYKFLSSSE 139 (318)
Q Consensus 128 --~s~~y~~L~~g~ 139 (318)
++..|+.|.+..
T Consensus 182 ~~~~~~~~~l~~~~ 195 (266)
T 3teb_A 182 IGNVAAYENILSQG 195 (266)
T ss_dssp TTCHHHHHHHHTTT
T ss_pred CCCCcHHHhhcccc
Confidence 899999887643
No 11
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.86 E-value=3.6e-22 Score=183.52 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=79.1
Q ss_pred CceeEEEEEeCCceeeeeeeEEeccCC----ccCCcEEEEEEEEecccCCceEEEEEecccCCCC------ChhhHHHHH
Q 021001 29 NVDGCAMFWKADKFRLLEQTSIEFKEF----GLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPN------RGEVKLGQI 98 (318)
Q Consensus 29 ~~~G~AIf~r~~rf~l~~~~~i~~~~~----~~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~------~~~~R~~Q~ 98 (318)
...|+||+ +||+++....+.|+.. ....|.++++.++.. ++.+.|+||||.+... ....|..|+
T Consensus 99 ~~~G~ail---Sr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~ 172 (301)
T 1zwx_A 99 EDGGVAVV---SQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKN---GKPYHIIGTHTQADDSLISKDTSRAIRAEQM 172 (301)
T ss_dssp BCCCCEEE---ESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEET---TEEEEEEEEECCCCCTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEE---ecCCcccceEEEecCCCCcccccCCCeEEEEEEEC---CEEEEEEEecCCCCCCCCCccccHHHHHHHH
Confidence 45899999 8899999888888742 123577888888762 7899999999987421 234599999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhccc
Q 021001 99 CFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSS 137 (318)
Q Consensus 99 ~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~ 137 (318)
..|.+.+++... ..+.|+|||||||+.|.+..|+.|.+
T Consensus 173 ~~l~~~i~~~~~-~~~~pvIl~GDfN~~~~~~~~~~l~~ 210 (301)
T 1zwx_A 173 QEIQTFIAKKNI-PKDEIIFIGGDLNVNYGTDEYHDMLK 210 (301)
T ss_dssp HHHHHHHHHHTC-CTTSEEEEEEECCCCTTSHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCCeEEEEeeCCCCCCcHHHHHHHH
Confidence 999988876421 12579999999999999999988865
No 12
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.83 E-value=1.8e-20 Score=172.39 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=91.5
Q ss_pred CccccccHHHHhhc----------CCCCc----------------EEEE--ecCCCceeEEEEEeCCceeeeeeeEEecc
Q 021001 2 EPSQKVNMPRVDRI----------EPGYY----------------LYAT--AHWDNVDGCAMFWKADKFRLLEQTSIEFK 53 (318)
Q Consensus 2 ~~~~ivclqEv~~~----------~~GY~----------------~y~~--r~g~~~~G~AIf~r~~rf~l~~~~~i~~~ 53 (318)
+.+|||||||++.. ..+|. .|+. .......|+||+ +|++++....+.++
T Consensus 44 ~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~ 120 (306)
T 2ddr_A 44 KNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIV---SKWPIAEKIQYVFA 120 (306)
T ss_dssp CSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEE---ESSCEEEEEEEECS
T ss_pred cCCCEEEEEeecCHHHHHHHHHHHhhhCCceeeccCcccccccccccccccccCccCCeEEEE---ECCCcccccEEEcC
Confidence 57899999999743 12343 1111 112346899999 67888888777775
Q ss_pred CC----ccCCcEEEEEEEEecccCCceEEEEEecccCCC------CChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecC
Q 021001 54 EF----GLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNP------NRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDF 123 (318)
Q Consensus 54 ~~----~~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p------~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDF 123 (318)
.. ....|.++++.++.. ++.+.|+||||.+.. .....|..|+..|.+.+++... ..+.|+||||||
T Consensus 121 ~~~~~~~~~~r~~~~~~i~~~---g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~-~~~~pvil~GDf 196 (306)
T 2ddr_A 121 KGCGPDNLSNKGFVYTKIKKN---DRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNI-PNNEYVLIGGDM 196 (306)
T ss_dssp CCC----CCCCEEEEEEEEET---TEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTC-CTTSCEEEEEEC
T ss_pred CCCCcchhcCCCeEEEEEEeC---CEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC-CCCCEEEEEeeC
Confidence 42 123578888888763 789999999998742 1234599999999888876521 125799999999
Q ss_pred CCCC------CCcchhhccc
Q 021001 124 NITP------QSAIYKFLSS 137 (318)
Q Consensus 124 Ns~P------~s~~y~~L~~ 137 (318)
|+.| .++.|+.|..
T Consensus 197 N~~~~~~d~~~s~~~~~l~~ 216 (306)
T 2ddr_A 197 NVNKINAENNNDSEYASMFK 216 (306)
T ss_dssp CCCCTTTSSCTTSHHHHHHH
T ss_pred CCCcccccccCCHHHHHHHH
Confidence 9999 8888887764
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.77 E-value=3.8e-19 Score=159.81 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=82.1
Q ss_pred ccccccHHHHhhc--------C--CCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCc-cCCcEEEEEEEEec
Q 021001 3 PSQKVNMPRVDRI--------E--PGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFG-LRENVAQLSAFEMR 70 (318)
Q Consensus 3 ~~~ivclqEv~~~--------~--~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~-~~~~v~~~~~l~~~ 70 (318)
.+|||||||+... + .||. ++..+ ....|+|||+|...+.+. ..+.... ...+.++++.++..
T Consensus 26 ~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~~--~~~~G~ailsr~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 99 (268)
T 1ako_A 26 QPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQ--KGHYGVALLTKETPIAVR----RGFPGDDEEAQRRIIMAEIPSL 99 (268)
T ss_dssp CCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEE--TTEEEEEEEESSCCSEEE----ESSTTCCHHHHTTEEEEEEEET
T ss_pred CCCEEEEEeccCChhhCCHhHhccCCCcEEEeCC--CCcceEEEEEecCcceee----eCCCCcccccCCCEEEEEEEcC
Confidence 6899999999632 1 6998 55433 346899999876654432 1122110 12345577777764
Q ss_pred ccCCceEEEEEecccCCCCCh-----hhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhh
Q 021001 71 NTKSRRVLVGNIHVLYNPNRG-----EVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKF 134 (318)
Q Consensus 71 ~~~~~~i~V~ntHL~~~p~~~-----~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~ 134 (318)
++.+.|+|+|+.+..... ..|..|+..|.+.+++... ...|+|+|||||+.|.+..+..
T Consensus 100 ---~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~Il~GDFN~~~~~~~~~~ 163 (268)
T 1ako_A 100 ---LGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELK--RDNPVLIMGDMNISPTDLDIGI 163 (268)
T ss_dssp ---TEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCC--TTSCEEEEEECCCCCSGGGBCS
T ss_pred ---CCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhhh--CCCCEEEEeECCCCCchhcccC
Confidence 579999999997643211 2478888888888776521 3689999999999999876654
No 14
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.77 E-value=7.2e-19 Score=164.31 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=79.0
Q ss_pred eeEEEEEeCCceeeeeeeEEeccCC-c---cCCcEEEEEEEEecccCCceEEEEEecccCCCC------ChhhHHHHHHH
Q 021001 31 DGCAMFWKADKFRLLEQTSIEFKEF-G---LRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPN------RGEVKLGQICF 100 (318)
Q Consensus 31 ~G~AIf~r~~rf~l~~~~~i~~~~~-~---~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~------~~~~R~~Q~~~ 100 (318)
.|+||+ +||+++....+.|... + ...|.++.+.++.. ++.|.|+||||.+... ....|..|+..
T Consensus 120 ~G~~il---Sr~Pi~~~~~~~~~~~~~~d~~~~r~~~~~~i~~~---g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~ 193 (317)
T 3i41_A 120 GGVAIV---SKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKN---GKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKE 193 (317)
T ss_dssp CCCEEE---ESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEEET---TEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHH
T ss_pred CccEEE---eCCCCccceeEECCCCCCcccccCcceEEEEEEEC---CEEEEEEEECCCCCCCCCcccccHHHHHHHHHH
Confidence 599999 8899999888888753 1 23567777777652 7899999999987431 13459999999
Q ss_pred HHHHHHHHHHHhCCCcEEEeecCCCCCCCcchhhcccC
Q 021001 101 LSSRAQIVAEKWGNIPVVLAGDFNITPQSAIYKFLSSS 138 (318)
Q Consensus 101 l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~~y~~L~~g 138 (318)
|.+.+++... ..+.|+|||||||+.|.+..|+.|...
T Consensus 194 l~~~i~~~~~-~~~~pvIl~GDfN~~~~s~~~~~l~~~ 230 (317)
T 3i41_A 194 ISDFVKKKNI-PKDETVYIGGDLNVNKGTPEFKDMLKN 230 (317)
T ss_dssp HHHHHHHHTC-CTTSCEEEEEECCCCTTSHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCCeEEEEeECCCCCCCHHHHHHHHh
Confidence 9998877521 136799999999999999999999863
No 15
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.76 E-value=5.9e-19 Score=157.74 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=71.1
Q ss_pred CccccccHHHHhhc----------CCCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEec
Q 021001 2 EPSQKVNMPRVDRI----------EPGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMR 70 (318)
Q Consensus 2 ~~~~ivclqEv~~~----------~~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~ 70 (318)
+++|||||||++.. ..||. ++.........|+|||+|.....+... +.........++ +.+ +.
T Consensus 27 ~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~~G~ailsr~~~~~~~~~--~~~~~~~~~~r~-~~~--~~- 100 (259)
T 2jc5_A 27 SGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIG--MGIEEFDREGRF-VRC--DF- 100 (259)
T ss_dssp TTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECCSSTTCCCEEEEESSCCSEEEES--CSCHHHHTTCCE-EEE--EE-
T ss_pred cCCCEEEEEEecchhhccChhhccccCCeEEEeccCCCCcceEEEEEecCceeEEeC--CCCCccCCCCeE-EEE--Ec-
Confidence 47899999998632 25898 554322334689999988765433221 111111112343 222 22
Q ss_pred ccCCceEEEEEecccCCCCChhhHH----HHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 71 NTKSRRVLVGNIHVLYNPNRGEVKL----GQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 71 ~~~~~~i~V~ntHL~~~p~~~~~R~----~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
+.+.|+|+|+..... +..|. .|+..|.+.+++... ...|+|+|||||+.|.+
T Consensus 101 ----~~~~v~~~h~~~~~~-~~~r~~~~~~~~~~l~~~~~~~~~--~~~~~Il~GDFN~~~~~ 156 (259)
T 2jc5_A 101 ----GRLSVISLYLPSGSS-AEERQQVKYRFLDAFYPMLEAMKN--EGRDIVVCGDWNIAHQN 156 (259)
T ss_dssp ----TTEEEEEEECCCCTT-CHHHHHHHHHHHHHHHHHHHHHHH--TCSEEEEEEECCCCCSG
T ss_pred ----CCEEEEEEeccCCCC-CcHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeeCCCCCch
Confidence 369999999976432 23343 566777776665543 36899999999999876
No 16
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.73 E-value=1.7e-17 Score=150.22 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=85.1
Q ss_pred CccccccHHHHhhc-----------C-----CCCc-EEEEecC--CCceeEEEEEeCCceeeeeeeEEeccCCcc-----
Q 021001 2 EPSQKVNMPRVDRI-----------E-----PGYY-LYATAHW--DNVDGCAMFWKADKFRLLEQTSIEFKEFGL----- 57 (318)
Q Consensus 2 ~~~~ivclqEv~~~-----------~-----~GY~-~y~~r~g--~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~----- 57 (318)
..+||||||||... + ++|. +...+.+ ...+++|++||++++++++... ++....
T Consensus 30 ~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~--~~~~~~~~~~~ 107 (260)
T 2a40_B 30 RRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQ--YDDGCESCGND 107 (260)
T ss_dssp TTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEEEE--CCTTSTTTHHH
T ss_pred ccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCcee--ccCCCcCCCCC
Confidence 36899999999752 1 2377 4433333 3568899999999999987744 332200
Q ss_pred -CCcEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCC---Ccchh
Q 021001 58 -RENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQ---SAIYK 133 (318)
Q Consensus 58 -~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~---s~~y~ 133 (318)
-.|..+++.++...+.++.|.|+|+||.+. .+..|+..|.+.++++.+..++.|+|+|||||+.|. ++.++
T Consensus 108 ~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~-----~~~~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~ 182 (260)
T 2a40_B 108 SFSREPAVVKFSSHSTKVKEFAIVALHSAPS-----DAVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWS 182 (260)
T ss_dssp HCSSCCEEEEEECTTSSSSEEEEEECCCCGG-----GHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGG
T ss_pred ceeeCCEEEEEEeCCCCCceEEEEEecCCCC-----CcHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCcccccchhh
Confidence 125556677776532267999999999651 234467777776666654445789999999999987 55554
Q ss_pred h
Q 021001 134 F 134 (318)
Q Consensus 134 ~ 134 (318)
.
T Consensus 183 ~ 183 (260)
T 2a40_B 183 S 183 (260)
T ss_dssp G
T ss_pred h
Confidence 4
No 17
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.72 E-value=1.4e-17 Score=148.60 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=71.1
Q ss_pred CccccccHHHHhhc----------CCCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCC--ccCCcEEEEEEEE
Q 021001 2 EPSQKVNMPRVDRI----------EPGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEF--GLRENVAQLSAFE 68 (318)
Q Consensus 2 ~~~~ivclqEv~~~----------~~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~--~~~~~v~~~~~l~ 68 (318)
+.+|||||||+... ..||. ++.. .....|+||++|.. +..... .+... ....+++ .+.
T Consensus 25 ~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~--~~~~~G~ailsr~~---~~~~~~-~~~~~~~~~~~~~~-~~~-- 95 (256)
T 2jc4_A 25 NPPDILVLQELKLDQDKFPAAALQMMGWHCVWSG--QKTYNGVAIVSRSV---PQDVHF-GLPALPDDPQRRVI-AAT-- 95 (256)
T ss_dssp SCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEEC--CSSSCCEEEEESSC---CEEEEE-SCTTSTTCCSCCEE-EEE--
T ss_pred cCCCEEEEEeeccchhcCCHhHHhhcCCeEEECC--CCcceEEEEEECCC---hHHhee-cCCCCccCCcCcEE-EEE--
Confidence 47899999998732 26898 4432 23468999998753 332222 23221 1123433 232
Q ss_pred ecccCCceEEEEEecccCCCCCh----hhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCc
Q 021001 69 MRNTKSRRVLVGNIHVLYNPNRG----EVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQSA 130 (318)
Q Consensus 69 ~~~~~~~~i~V~ntHL~~~p~~~----~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s~ 130 (318)
. +.+.|+|+|+......+ +.|..|+..|.+.++++.. ...|+|+|||||+.|.+.
T Consensus 96 ~-----~~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~il~GDFN~~~~~~ 154 (256)
T 2jc4_A 96 V-----SGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMT--RHGKLVLLGDFNIAPADA 154 (256)
T ss_dssp E-----TTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHT--TCSSEEEEEECCCCCSGG
T ss_pred e-----CCEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeECCCCCchh
Confidence 2 26999999996532211 2266788888877776532 368999999999999863
No 18
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.70 E-value=2.5e-17 Score=150.13 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=70.7
Q ss_pred ccccccHHHHhhc----------CCCC-c-EEEE-ecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEe
Q 021001 3 PSQKVNMPRVDRI----------EPGY-Y-LYAT-AHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEM 69 (318)
Q Consensus 3 ~~~ivclqEv~~~----------~~GY-~-~y~~-r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~ 69 (318)
.+|||||||++.. ..|| . ++.. +......|+|||+|...+++... +.........|+ +. ++
T Consensus 55 ~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~~~~~~~~~--~~~~~~~~~~r~-l~--~~- 128 (285)
T 2o3h_A 55 APDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYG--IGDEEHDQEGRV-IV--AE- 128 (285)
T ss_dssp CCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC--CCSCCEEEEESSCCSEEEES--CSCGGGSSBCCE-EE--EE-
T ss_pred CCCEEEEEEeecchhhccHHHHhccCCcEEEEecccCCcccceEEEEEccChHHeeec--cCCcccCCCCcE-EE--EE-
Confidence 6899999999743 3689 4 4443 22223469999998876654431 111111112343 22 22
Q ss_pred cccCCceEEEEEecccCCCCC---hhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 70 RNTKSRRVLVGNIHVLYNPNR---GEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 70 ~~~~~~~i~V~ntHL~~~p~~---~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
.+.+.|+|+|+...... ...|..|+..|.+.++++.. ..|+|+|||||+.|..
T Consensus 129 ----~~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~---~~p~Il~GDFN~~~~~ 184 (285)
T 2o3h_A 129 ----FDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLAS---RKPLVLCGDLNVAHEE 184 (285)
T ss_dssp ----CSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHT---TSCEEEEEECSCCCSG
T ss_pred ----eCCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHhhcc---CCCEEEEEECCCCCch
Confidence 35799999999542111 12267888888888877643 4799999999998753
No 19
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.70 E-value=2.5e-17 Score=153.58 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=68.6
Q ss_pred ccccccHHHHhhc----------CCCC-cEE-EE-ecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEe
Q 021001 3 PSQKVNMPRVDRI----------EPGY-YLY-AT-AHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEM 69 (318)
Q Consensus 3 ~~~ivclqEv~~~----------~~GY-~~y-~~-r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~ 69 (318)
.+|||||||+... ..|| ..| .. .......|+|||+|...+.+... +.........|+ +.+ +
T Consensus 88 ~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~~~~~~~~~--~~~~~~~~~~r~-l~~--~- 161 (318)
T 1hd7_A 88 APDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYG--IGDEEHDQEGRV-IVA--E- 161 (318)
T ss_dssp CCSEEEEECCCCCC-----------CCCEEEEECC-----CCCEEEEESSCCSEEEES--CSCGGGSSSSCE-EEE--E-
T ss_pred CCCEEEEEEccCchhhccHHHHhcCCCceEEEecCCCCCccceEEEEEcCCceeEEec--CCCcccCCCCcE-EEE--E-
Confidence 6899999998742 3689 444 33 21223469999988776554321 111111122453 222 2
Q ss_pred cccCCceEEEEEecccCCCCC---hhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 70 RNTKSRRVLVGNIHVLYNPNR---GEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 70 ~~~~~~~i~V~ntHL~~~p~~---~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
.+.+.|+|+|+...... ...|..|+..|.+.++++.. ..|+|||||||+.|.+
T Consensus 162 ----~~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~---~~pvIl~GDFN~~~~~ 217 (318)
T 1hd7_A 162 ----FDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLAS---RKPLVLCGDLNVAHEE 217 (318)
T ss_dssp ----CSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHH---HSCEEEEEECSCCCSG
T ss_pred ----cCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHhccc---CCCEEEEeeCCCCChh
Confidence 24699999999432111 12377888888888877644 3799999999998864
No 20
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.69 E-value=7.5e-17 Score=145.74 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=71.9
Q ss_pred CccccccHHHHhhc----------CCCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEec
Q 021001 2 EPSQKVNMPRVDRI----------EPGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMR 70 (318)
Q Consensus 2 ~~~~ivclqEv~~~----------~~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~ 70 (318)
+.+|||||||++.. ..||. ++......+..|+|||+|...+.+...... .......|+. .++
T Consensus 29 ~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~Gvail~k~~~~~~~~~~~~--~~~d~~gr~i---~~~-- 101 (265)
T 3g91_A 29 EKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREGFGV--ERFDTEGRIQ---IAD-- 101 (265)
T ss_dssp HCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECBSSTTSCCEEEEESSCCSEEECCCSC--HHHHSBSCEE---EEE--
T ss_pred cCCCEEEEEeccccccccChhhhcccCCcEEEccCCCCCcCEEEEEEecChHHhccCCCC--cccCCcCCEE---EEE--
Confidence 36899999998632 27998 554443345679999988765444322110 0001123432 222
Q ss_pred ccCCceEEEEEecccCCCCCh---hhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 71 NTKSRRVLVGNIHVLYNPNRG---EVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 71 ~~~~~~i~V~ntHL~~~p~~~---~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
...+.|+|+|+-...... ..|+.+...|.+.++++.. .+.|+|+|||||..|..
T Consensus 102 ---~~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~ii~GDfN~~~~~ 158 (265)
T 3g91_A 102 ---FDDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRERD--SGRNVIICGDFNTAHRE 158 (265)
T ss_dssp ---CSSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEECCCCCSG
T ss_pred ---eCCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHc--CCCCEEEECccccCCch
Confidence 357999999994432211 1256677777777776654 25799999999999874
No 21
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.67 E-value=8.5e-17 Score=143.87 Aligned_cols=111 Identities=15% Similarity=0.109 Sum_probs=65.7
Q ss_pred ccccccHHHHhhc----------CCCCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCcc-CCcEEEEEEEEec
Q 021001 3 PSQKVNMPRVDRI----------EPGYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGL-RENVAQLSAFEMR 70 (318)
Q Consensus 3 ~~~ivclqEv~~~----------~~GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~-~~~v~~~~~l~~~ 70 (318)
.+|||||||++.. ..||. ++..+ ....|+||++|.. + .... ..+..... ..|+ +.+. .
T Consensus 27 ~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~~--~~~~G~ailsr~~-~--~~~~-~~~~~~~~~~~r~-l~~~--~- 96 (257)
T 2voa_A 27 KPDILCMQETKVENRKFPEADFHRIGYHVVFSGS--KGRNGVAIASLEE-P--EDVS-FGLDSEPKDEDRL-IRAK--I- 96 (257)
T ss_dssp CCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEEE--TTEEEEEEEESSC-C--EEEE-ESCSSSSCCGGGE-EEEE--E-
T ss_pred CCCEEEEEEeecchhhcCHHHhhhCCCcEEEcCC--CCccEEEEEEccC-h--HHhe-ecCCCCccccCcE-EEEE--E-
Confidence 6899999999631 26898 54422 2457999998763 2 2211 12221100 3453 3332 2
Q ss_pred ccCCceEEEEEecccCCCCChhh----HHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 71 NTKSRRVLVGNIHVLYNPNRGEV----KLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 71 ~~~~~~i~V~ntHL~~~p~~~~~----R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
+.+.|+|+|+......+.. |..++..|.+.+++... ...|+|+|||||+.|.+
T Consensus 97 ----~~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~--~~~p~Il~GDFN~~~~~ 153 (257)
T 2voa_A 97 ----AGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVD--FRSFAVWCGDMNVAPEP 153 (257)
T ss_dssp ----TTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHCC--TTSCEEEEEECSCCCSG
T ss_pred ----CCEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeeCCCCCch
Confidence 2699999999542211112 44556666666554421 36799999999998875
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.67 E-value=1.4e-16 Score=156.68 Aligned_cols=122 Identities=10% Similarity=0.064 Sum_probs=69.4
Q ss_pred ccccccHHHHhh----------c--CCCCc-EEEEec-CCCceeEEEEEeCCce----e-eeeeeEEecc----------
Q 021001 3 PSQKVNMPRVDR----------I--EPGYY-LYATAH-WDNVDGCAMFWKADKF----R-LLEQTSIEFK---------- 53 (318)
Q Consensus 3 ~~~ivclqEv~~----------~--~~GY~-~y~~r~-g~~~~G~AIf~r~~rf----~-l~~~~~i~~~---------- 53 (318)
.+|||||||++. . ..||. +|.... .....|+|||+|+..+ + .+.. .+.+.
T Consensus 179 ~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~-~~~~p~~~~~~~~~g 257 (467)
T 2j63_A 179 KPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTR-GFALPSEPQADAAAG 257 (467)
T ss_dssp CCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEE-SSCCCCC--------
T ss_pred CCCEEEEEecccchhccchHHHHhhcCCceEEEecccCCCCcceEEEEEeCCccccccceeeee-ccccccccccccccc
Confidence 689999999973 1 36898 554322 2346799999988764 1 1111 11110
Q ss_pred -------CCccCCcEEEEEEEEecccCC------ceEEEEEecccCCCCC---hhhHHHHH-HHHHHHHHHHHHH-----
Q 021001 54 -------EFGLRENVAQLSAFEMRNTKS------RRVLVGNIHVLYNPNR---GEVKLGQI-CFLSSRAQIVAEK----- 111 (318)
Q Consensus 54 -------~~~~~~~v~~~~~l~~~~~~~------~~i~V~ntHL~~~p~~---~~~R~~Q~-~~l~~~l~~~~~~----- 111 (318)
......|++ .+.++. . + +.|.|+|+|+...... -..|+.|. ..|.+.++++...
T Consensus 258 s~~~~~~~~D~egR~I-~a~~~~--~-g~~~~~~~~~~vinvYlP~~~~~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~ 333 (467)
T 2j63_A 258 SRVLVEGAGDEEGRVL-TTFLSP--D-PDSASSSSRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENA 333 (467)
T ss_dssp ---CCCCCCCTTCCEE-EEEECS--S-CCC----CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTT
T ss_pred cccccccccCCCCcEE-EEEEEe--C-CcccccCceEEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 111234543 455543 2 4 7899999999542111 11233222 4455555554310
Q ss_pred -----------hCCCcEEEeecCCCCCCC
Q 021001 112 -----------WGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 112 -----------~~~~PvIl~GDFNs~P~s 129 (318)
....|+|||||||..|.+
T Consensus 334 ~~r~~~a~g~~~~~~pvIL~GDFN~~p~~ 362 (467)
T 2j63_A 334 AVPSAAAMGSGSSPHGFIWAGDLNVAERD 362 (467)
T ss_dssp C----------CCSCEEEEEEECCCCCST
T ss_pred ccchhhhhcccccCCcEEEeccccCCCch
Confidence 025799999999998865
No 23
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.67 E-value=2.1e-16 Score=139.12 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=68.2
Q ss_pred CccccccHHHHhhc--------CCCCc-EEEEecCCCceeEEEEEeCC-ceeeeeeeEEeccCCccCCcEEEEEEEEecc
Q 021001 2 EPSQKVNMPRVDRI--------EPGYY-LYATAHWDNVDGCAMFWKAD-KFRLLEQTSIEFKEFGLRENVAQLSAFEMRN 71 (318)
Q Consensus 2 ~~~~ivclqEv~~~--------~~GY~-~y~~r~g~~~~G~AIf~r~~-rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~ 71 (318)
+.+|||||||++.. ..||. +|.........|+||++|+. .+.+.. ..... ..|.+ .+.++.
T Consensus 34 ~~~DIv~LQE~~~~~~~~~~l~~~~y~~~~~~~~~~~~~Gvail~r~~~~~~~~~---~~~~~---~~r~i-~~~~~~-- 104 (238)
T 1vyb_A 34 QDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTK---IKRDK---EGHYI-MVKGSI-- 104 (238)
T ss_dssp HCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSSSSCCEEEEECTTCCCEEEE---EEECT---TSSEE-EEEEEE--
T ss_pred cCCCEEEEecccCCCCCchhHhhCCCCeEEEccCCCCCceEEEEEeCCCCccccc---eeEcC---CCcEE-EEEEEe--
Confidence 36899999998632 26898 55432223456999999986 555443 22221 24543 345554
Q ss_pred cCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 021001 72 TKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 72 ~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~s 129 (318)
. ++.+.|+|+|+.. ....| +...+++.+.+. ...|+|+|||||+.|.+
T Consensus 105 ~-~~~~~v~~~y~p~---~~~~~--~~~~l~~~l~~~----~~~~~Il~GDFN~~~~~ 152 (238)
T 1vyb_A 105 Q-QEELTILNIYAPN---TGAPR--FIKQVLSDLQRD----LDSHTLIMGDFNTPLST 152 (238)
T ss_dssp T-TEEEEEEEEECCS---SSHHH--HHHHHHHHTTTT----CCTTEEEEEECSSCSSG
T ss_pred C-CCcEEEEEEecCC---CCcHH--HHHHHHHHHHhc----cCCCEEEEccCCCCCCc
Confidence 2 7899999999854 22222 344444444332 35799999999998864
No 24
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.65 E-value=4e-16 Score=139.45 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=66.8
Q ss_pred CccccccHHHHhhc-------CCCCcEEEE-ecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccC
Q 021001 2 EPSQKVNMPRVDRI-------EPGYYLYAT-AHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTK 73 (318)
Q Consensus 2 ~~~~ivclqEv~~~-------~~GY~~y~~-r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~ 73 (318)
+.+|||||||++.. ..||.+|.. +......|+||++|+.++++... ... ..+-++++.++..
T Consensus 44 ~~~DIv~lQE~~~~~~~~~~~~~gy~~~~~~~~~~~~~GvaIl~~~~~~~~~~~-----~~~--~~~~~~~~~i~~~--- 113 (245)
T 1wdu_A 44 RKAAIALIQEPYVGGAKSMKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVIQY-----PQL--TTNNIVVVGIRTR--- 113 (245)
T ss_dssp HTCSEEEEESCCC------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEEEEC-----TTT--CCSSEEEEEEECS---
T ss_pred cCCCEEEEEcccccCCccccCCCcceEeccccccCCCCCeEEEEECCCcceEEe-----ccc--ccCCEEEEEEEcC---
Confidence 46899999999853 257874432 22234579999998888876422 111 2233455566543
Q ss_pred CceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCC
Q 021001 74 SRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQ 128 (318)
Q Consensus 74 ~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~ 128 (318)
++.+.|+|+|+..... ......|+..+++. ....|+|+|||||+.+.
T Consensus 114 ~~~~~v~~vy~p~~~~-~~~~~~~l~~~~~~-------~~~~~~Ii~GDfN~~~~ 160 (245)
T 1wdu_A 114 AWEITLVSYYFEPDKP-IESYLEQIKRVERK-------MGPKRLIFGGDANAKST 160 (245)
T ss_dssp SCEEEEEEEECCTTSC-SHHHHHHHHHHHHT-------TCSSSEEEEEECCCCCG
T ss_pred CCcEEEEEEEeCCCCC-HHHHHHHHHHHHHH-------hCCCcEEEEeccccCcc
Confidence 6789999999954211 11233333333221 13579999999998774
No 25
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.49 E-value=7.9e-15 Score=135.22 Aligned_cols=131 Identities=8% Similarity=-0.035 Sum_probs=83.7
Q ss_pred cccc--ccHHHHhhcC-----------------C--CCcEEEEe-cCCCceeEEEEEeCCceeeeeeeEEeccCCccCCc
Q 021001 3 PSQK--VNMPRVDRIE-----------------P--GYYLYATA-HWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN 60 (318)
Q Consensus 3 ~~~i--vclqEv~~~~-----------------~--GY~~y~~r-~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~ 60 (318)
.+|| |||||+.... . +|...... .+..+..++||+|++.++.++...+.-....+..+
T Consensus 36 ~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~~~~~g~~g~k 115 (282)
T 2imq_X 36 TPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKS 115 (282)
T ss_dssp CCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCS
T ss_pred CCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEeccCceeEEEEEEEEccccCccceeeeeccccccccCC
Confidence 5785 5999987431 2 34422221 23346788888888877666544431111123567
Q ss_pred EEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCC---Ccchhhccc
Q 021001 61 VAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQ---SAIYKFLSS 137 (318)
Q Consensus 61 v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~---s~~y~~L~~ 137 (318)
.++++.++.. +..|+++||||..+......|..|++.|++.+..+ ....|+|+|||||..++ +.+++++.+
T Consensus 116 Gav~~r~~~~---~~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~~~~~---~~~~~vi~~GDfN~r~~~~~~~~~~~i~~ 189 (282)
T 2imq_X 116 GGIVTSFTIY---NKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKD---DPSDFLFWIGDLNVRVETNATHAKSLVDQ 189 (282)
T ss_dssp EEEEEEEEET---TEEEEEEEEECCTTCCCTTSSSSSCCGGGCTTSSS---SCCSEEEEEEECSCCBCSCHHHHHHHHHT
T ss_pred ceEEEEEEEC---CEEEEEEEECCCCCCchHHHHHHHHHHHHHhhhcc---CccceEEEecccccccCCCHHHHHHHHhh
Confidence 7888888763 78999999999885332345777777776654332 13568999999997665 456777766
Q ss_pred Cc
Q 021001 138 SE 139 (318)
Q Consensus 138 g~ 139 (318)
+.
T Consensus 190 ~~ 191 (282)
T 2imq_X 190 NN 191 (282)
T ss_dssp TC
T ss_pred cc
Confidence 53
No 26
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.42 E-value=2.6e-13 Score=122.28 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=80.1
Q ss_pred cccccHHHHhhc-----------------------CCC------Cc-EEEEec--CCCceeEEEEEeCCceeeeeeeEEe
Q 021001 4 SQKVNMPRVDRI-----------------------EPG------YY-LYATAH--WDNVDGCAMFWKADKFRLLEQTSIE 51 (318)
Q Consensus 4 ~~ivclqEv~~~-----------------------~~G------Y~-~y~~r~--g~~~~G~AIf~r~~rf~l~~~~~i~ 51 (318)
.|||.|||++.. ..| +. +|..+. +....|+||+ +|++.. +.+.
T Consensus 48 ~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~~~yiY~~~~D~~~~r~nlAIl---Sr~~ad--ev~v 122 (262)
T 2f1n_A 48 VDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALV---SNRRAD--EVFV 122 (262)
T ss_dssp CSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEE---ESSCCS--EEEE
T ss_pred CCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCceEEEEEeeccCCCCceeeEEE---Eccccc--ceEE
Confidence 899999999954 023 65 555444 4678999999 666665 3444
Q ss_pred ccCCccCCcEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHHHhCC-----CcEEEeecCCCC
Q 021001 52 FKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGN-----IPVVLAGDFNIT 126 (318)
Q Consensus 52 ~~~~~~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~-----~PvIl~GDFNs~ 126 (318)
+.......|-++.+.+ +.+.++|||+.++ .+..|.+|+..+.+.+... .. .|.|+|||||..
T Consensus 123 Lp~~~~~~Rp~lgiri-------~~~~ff~tHa~a~--~g~da~a~v~~I~~~~~~~----~~~~~~~~pwii~GDFNr~ 189 (262)
T 2f1n_A 123 LSPVRQGGRPLLGIRI-------GNDAFFTAHAIAM--RNNDAPALVEEVYNFFRDS----RDPVHQALNWMILGDFNRE 189 (262)
T ss_dssp ECCSSTTCCCEEEEEE-------TTEEEEEEECCSS--SSCSHHHHHHHHHHHHHTC----SSHHHHTCEEEEEEECSSC
T ss_pred CCCCCCCCCceEEEEE-------CCEEEEEEEecCC--CCccHHHHHHHHHHHHhcC----cccccCCCcEEEEecCCCC
Confidence 5543333565555444 2499999999885 3456888888877775542 23 599999999999
Q ss_pred CCCcchhhcc
Q 021001 127 PQSAIYKFLS 136 (318)
Q Consensus 127 P~s~~y~~L~ 136 (318)
|++...++..
T Consensus 190 P~sl~~~l~~ 199 (262)
T 2f1n_A 190 PADLEMNLTV 199 (262)
T ss_dssp HHHHHTTSCH
T ss_pred Ccchhhhhhc
Confidence 9999887543
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.36 E-value=2.1e-12 Score=117.21 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=55.6
Q ss_pred CCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHH
Q 021001 27 WDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQ 106 (318)
Q Consensus 27 g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~ 106 (318)
+....|+||+.| +++.+...+.........|-++.+ +. +. +.|++||+..+ .+..+..|++.|.+.+.
T Consensus 92 ~~g~~g~AIlSR---~~~~~v~~l~~~~~~~~~R~~l~i--~i----~g-~~f~s~Hl~~~--~~~ea~~~v~~I~~~~~ 159 (261)
T 1sr4_B 92 GANRVNLAIVSR---RQADEAFIVHSDSSVLQSRPAVGI--RI----GT-DVFFTVHALAT--GGSDAVSLIRNIFTTFN 159 (261)
T ss_dssp TTSCSCEEEEES---SCCSEEEEECCCCCSSCCCCEEEE--EE----TT-EEEEEEECCTT--TTTTHHHHHHHHHHHHH
T ss_pred CCCccceEEEEc---cchhceEEcCCCCCCCcCcceEEE--EE----CC-eEEEEeCCCCC--CCchHHHHHHHHHHHHH
Confidence 457889999954 455443333433211345655544 32 22 99999999764 23557777777766654
Q ss_pred HHH--HHhCCCcEEEeecCCCCCCC
Q 021001 107 IVA--EKWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 107 ~~~--~~~~~~PvIl~GDFNs~P~s 129 (318)
... ......|.|||||||..|.+
T Consensus 160 ~~~~~~~~~~~~~ii~GDFN~~p~~ 184 (261)
T 1sr4_B 160 SSSSPPERRVYSWMVVGDFNRAPAN 184 (261)
T ss_dssp C---CGGGGGCEEEEEEECSSCHHH
T ss_pred hcccCCcccCCcEEEEeeCCCChhH
Confidence 420 00012699999999998866
No 28
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.35 E-value=2.1e-12 Score=116.04 Aligned_cols=102 Identities=9% Similarity=0.037 Sum_probs=60.6
Q ss_pred CccccccHHHHhhcCCCCcEEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCccCCcEEEEEEEEecccCCceEEEEE
Q 021001 2 EPSQKVNMPRVDRIEPGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEMRNTKSRRVLVGN 81 (318)
Q Consensus 2 ~~~~ivclqEv~~~~~GY~~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~i~V~n 81 (318)
+.+||+||||++. ..||. +. +.+..|+||+.++..+++..... +. ++-+.++.+ . ...+.|+|
T Consensus 32 ~~~DIl~LQEt~~-~~gy~-~~---~~~~~gvail~~~~~~~~~~~~~--~~-----~~~~~~i~i--~---~~~i~i~s 94 (240)
T 2ei9_A 32 LGLDIVLVQEQYS-MVGFL-AQ---CGAHPKAGVYIRNRVLPCAVLHH--LS-----STHITVVHI--G---GWDLYMVS 94 (240)
T ss_dssp HTCSEEEEESCCT-TSSSE-EC---CSSSCSEEEEESSTTSCEEECGG--GC-----CSSEEEEEE--T---TTTEEEEE
T ss_pred cCCCEEEeecceE-cCCce-Ee---ccCCCCEEEEEecCCcceeeecc--cC-----CCCEEEEEE--e---eccEEEEE
Confidence 3689999999985 46887 31 23468999999875554432111 11 122223333 2 35799999
Q ss_pred ecccCCCCChhhHHHHHHHHHHHHHHHHHHhCCCcEEEeecCCCCCC
Q 021001 82 IHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITPQ 128 (318)
Q Consensus 82 tHL~~~p~~~~~R~~Q~~~l~~~l~~~~~~~~~~PvIl~GDFNs~P~ 128 (318)
+|+-.. ...+.++.++..|.+.+ ...|+|+|||||..+.
T Consensus 95 vY~P~~-~~~~~~~~~l~~l~~~~-------~~~~~Ii~GDfN~~~~ 133 (240)
T 2ei9_A 95 AYFQYS-DPIDPYLHRLGNILDRL-------RGARVVICADTNAHSP 133 (240)
T ss_dssp EECCTT-SCSHHHHHHHHHHHHHT-------TTSCEEEEEECCCCCG
T ss_pred EEcCCC-CchhHHHHHHHHHHHhc-------CCCcEEEEEecccccc
Confidence 999431 11123444444443221 2469999999998773
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.29 E-value=2.1e-11 Score=115.55 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=70.7
Q ss_pred CceeEEEEEeCCceeeeeeeEEeccCCc----cCCcEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHH
Q 021001 29 NVDGCAMFWKADKFRLLEQTSIEFKEFG----LRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSR 104 (318)
Q Consensus 29 ~~~G~AIf~r~~rf~l~~~~~i~~~~~~----~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~ 104 (318)
.+.+++||.|++....++.-....-..+ +..+.++.+.+... +..|+++|+||..+....+.|..|...|++.
T Consensus 111 ~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~---~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~ 187 (347)
T 1i9z_A 111 VGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYE---DTGLCFITSHLAAGYTNYDERDHDYRTIASG 187 (347)
T ss_dssp TTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEET---TEEEEEEEEECCCCSSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEEC---CeEEEEEEecCCCCCccHHHHHHHHHHHHHh
Confidence 4789999998876654433222222222 24567788888764 6789999999988654445688998888776
Q ss_pred HHHHHHH---hCCCcEEEeecCC---CCCCCcchhhcccCc
Q 021001 105 AQIVAEK---WGNIPVVLAGDFN---ITPQSAIYKFLSSSE 139 (318)
Q Consensus 105 l~~~~~~---~~~~PvIl~GDFN---s~P~s~~y~~L~~g~ 139 (318)
+. +... ....++|+||||| ..|.+.+.+++.++.
T Consensus 188 l~-f~~~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~ 227 (347)
T 1i9z_A 188 LR-FRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGK 227 (347)
T ss_dssp CC-CGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTC
T ss_pred hc-cCcccccccCccEEEecccccccCCCHHHHHHHHhhcc
Confidence 53 1110 1236899999999 555566777776654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.85 E-value=1.5e-08 Score=96.18 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=76.9
Q ss_pred cccc--ccHHHHhhc-----------C-CCCcEEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCc----cCCcEEEE
Q 021001 3 PSQK--VNMPRVDRI-----------E-PGYYLYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFG----LRENVAQL 64 (318)
Q Consensus 3 ~~~i--vclqEv~~~-----------~-~GY~~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~----~~~~v~~~ 64 (318)
.+|| |+|||+... + .+|...... ...+.+++||.|++....++......-..+ +.+..++.
T Consensus 57 ~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s~-~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~ 135 (357)
T 2xsw_A 57 AQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSA-AHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALG 135 (357)
T ss_dssp CCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEEE-EETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhhh-hhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEE
Confidence 4685 889998743 1 344422222 124688999998876544433232222222 23445666
Q ss_pred EEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHHHHHHHH---------------HhCCCcEEEeecCCCCCCC
Q 021001 65 SAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAE---------------KWGNIPVVLAGDFNITPQS 129 (318)
Q Consensus 65 ~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~l~~~~~---------------~~~~~PvIl~GDFNs~P~s 129 (318)
+.+... +..|+++|+||..+......|..|...|++.+. +.. .....++|++||||...+.
T Consensus 136 vr~~~~---~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~-f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 136 ISFTFF---GTSFLFITSHFTSGDGKVAERLLDYTRTVQALV-LPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp EEEEET---TEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCC-CCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred EEEEEC---CeEEEEEEEccCCCCchHHHHHHHHHHHHHHhc-ccccccccccccccccccccccceEEEecccCccccc
Confidence 777764 679999999999875444568889888887653 100 0013579999999988775
Q ss_pred c
Q 021001 130 A 130 (318)
Q Consensus 130 ~ 130 (318)
+
T Consensus 212 ~ 212 (357)
T 2xsw_A 212 G 212 (357)
T ss_dssp C
T ss_pred c
Confidence 3
No 31
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=97.59 E-value=0.00012 Score=68.04 Aligned_cols=115 Identities=13% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCc-EEEEecCCCceeEEEEEeCCceeeeeeeEEeccCCc----cCCcEEEEEEEEecccCCceEEEEEecccCCCCChh
Q 021001 18 GYY-LYATAHWDNVDGCAMFWKADKFRLLEQTSIEFKEFG----LRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGE 92 (318)
Q Consensus 18 GY~-~y~~r~g~~~~G~AIf~r~~rf~l~~~~~i~~~~~~----~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~ 92 (318)
.|. +-... -.+-.++||.|++....++......-..| +.+..++.+.+... +..|+++|+||..+...-.
T Consensus 80 ~Y~~v~s~~--L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~---~ts~~FVn~HLaAg~~~~~ 154 (316)
T 4a9c_A 80 DYRPIAMQS--LWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFN---GTSFGFVNCHLTSGNEKTA 154 (316)
T ss_dssp CCEEEEEEE--ETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEET---TEEEEEEEEECCCSTTCHH
T ss_pred CEEEEEeee--ehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEEC---CcEEEEEEeccccCchHHH
Confidence 466 33333 35789999999876554443332222222 23456666677764 6799999999988654445
Q ss_pred hHHHHHHHHHHHHHHHHH----Hh----CCCcEEEeecCCCCCC---CcchhhcccC
Q 021001 93 VKLGQICFLSSRAQIVAE----KW----GNIPVVLAGDFNITPQ---SAIYKFLSSS 138 (318)
Q Consensus 93 ~R~~Q~~~l~~~l~~~~~----~~----~~~PvIl~GDFNs~P~---s~~y~~L~~g 138 (318)
.|..+...|++.+. +.. .+ ....++++||||--=+ ..+.+++.++
T Consensus 155 ~Rn~d~~~I~~~l~-f~~~~~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~ 210 (316)
T 4a9c_A 155 RRNQNYLDILRLLS-LGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRK 210 (316)
T ss_dssp HHHHHHHHHHHHCC-C-------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC-CCCCCcCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcc
Confidence 68888888887642 110 00 0123899999996432 3344444443
No 32
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=97.00 E-value=0.0013 Score=61.03 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=59.0
Q ss_pred CceeEEEEEeCCceeeeeeeEEeccCCc----cCCcEEEEEEEEecccCCceEEEEEecccCCCCChhhHHHHHHHHHHH
Q 021001 29 NVDGCAMFWKADKFRLLEQTSIEFKEFG----LRENVAQLSAFEMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSR 104 (318)
Q Consensus 29 ~~~G~AIf~r~~rf~l~~~~~i~~~~~~----~~~~v~~~~~l~~~~~~~~~i~V~ntHL~~~p~~~~~R~~Q~~~l~~~ 104 (318)
.+-.+.+|.|++....++.-....-..| +.+..++.+.+... +..++++|+||..+......|..+...|++.
T Consensus 88 vGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~---~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~ 164 (313)
T 3mtc_A 88 VGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFH---NTSICVVNSHLAAHIEEYERRNQDYKDICSR 164 (313)
T ss_dssp TTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEET---TEEEEEEEEECCCSGGGHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEEC---CcEEEEEeeccCCCchHHHHHHHHHHHHHHh
Confidence 4667788888876554444333322232 23456666777764 6789999999987543334477778777766
Q ss_pred HHHHHHH---------hCCCcEEEeecCCCCCC
Q 021001 105 AQIVAEK---------WGNIPVVLAGDFNITPQ 128 (318)
Q Consensus 105 l~~~~~~---------~~~~PvIl~GDFNs~P~ 128 (318)
+. +... ....-++++||||---+
T Consensus 165 l~-f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 165 MQ-FCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp CC-BCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred cc-cCCCCCccCCccccCCceEEEecccccccc
Confidence 42 1100 01224899999996543
Done!