BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021002
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 481 bits (1238), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/318 (72%), Positives = 259/318 (81%), Gaps = 1/318 (0%)
Query: 2 ENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCM 61
ENFPII L K+NG ER+AT E I DACENWGFFELVNHGI E+ DTV++ TK HY KC
Sbjct: 2 ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 62 DQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVEL 121
+QRFK++VASK LE VQ+EV D DWESTFFL+HLP+SN++E+PDL+++YR+ ++FA L
Sbjct: 62 EQRFKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRL 121
Query: 122 EKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAG 181
EK+A K FYGSKGP FGTKVSNYPPCPKPDLIKGLRAHTDAG
Sbjct: 122 EKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAG 181
Query: 182 GIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTE 241
GIILLFQDD+VSGLQLLKD QW+DVPP +HSIV+NLGDQLEVITNGKYKSV HRVIAQ +
Sbjct: 182 GIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKD 241
Query: 242 GNRMSIASFYNPGSDAVIYPAPALVEKEA-VNSQVYPKFVFEDYMKLYAGLKFQAKEPRF 300
G R S+ASFYNPGSDAVIYPAPALVEKEA N QVYPKFVF+DY KLYAGLKFQAKEPRF
Sbjct: 242 GARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAKEPRF 301
Query: 301 EAMKNMETIVNLGPIATV 318
EA K ET V PIATV
Sbjct: 302 EAXKAXETDVKXDPIATV 319
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 135/279 (48%), Gaps = 14/279 (5%)
Query: 5 PIIDLSKLNGDE---RSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCM 61
P IDL + D+ R +E + A +WG L+NHGI +L++ V++ +E + +
Sbjct: 47 PTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSV 106
Query: 62 DQRFKQM-------VASKGLEAVQSEVNDLDWESTFFLRHLP--VSNMAEIPDLEDDYRK 112
+++ K + G + + L+WE FF P +++ P DY +
Sbjct: 107 EEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE 166
Query: 113 AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIK 172
A E+A L +A +K G + K++ YP CP+P+L
Sbjct: 167 ATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELAL 226
Query: 173 GLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSV 232
G+ AHTD + + + V GLQL + +WV + SIV+++GD LE+++NGKYKS+
Sbjct: 227 GVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSI 285
Query: 233 LHRVIAQTEGNRMSIASFYNPGSDAVIY-PAPALVEKEA 270
LHR + E R+S A F P D ++ P P +V E+
Sbjct: 286 LHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVES 324
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 135/279 (48%), Gaps = 14/279 (5%)
Query: 5 PIIDLSKLNGDE---RSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCM 61
P IDL + D+ R +E + A +WG L+NHGI +L++ V++ +E + +
Sbjct: 48 PTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSV 107
Query: 62 DQRFKQM-------VASKGLEAVQSEVNDLDWESTFFLRHLP--VSNMAEIPDLEDDYRK 112
+++ K + G + + L+WE FF P +++ P DY +
Sbjct: 108 EEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE 167
Query: 113 AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIK 172
A E+A L +A +K G + K++ YP CP+P+L
Sbjct: 168 ATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELAL 227
Query: 173 GLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSV 232
G+ AHTD + + + V GLQL + +WV + SIV+++GD LE+++NGKYKS+
Sbjct: 228 GVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSI 286
Query: 233 LHRVIAQTEGNRMSIASFYNPGSDAVIY-PAPALVEKEA 270
LHR + E R+S A F P D ++ P P +V E+
Sbjct: 287 LHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVES 325
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 132/279 (47%), Gaps = 14/279 (5%)
Query: 5 PIIDLSKLNGDE---RSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCM 61
P IDL + D+ R +E + A +WG L+NHGI +L + V++ +E + +
Sbjct: 48 PTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSV 107
Query: 62 DQRFKQM-------VASKGLEAVQSEVNDLDWESTFFLRHLP--VSNMAEIPDLEDDYRK 112
+++ K + G + + L+WE FF P +++ P DY +
Sbjct: 108 EEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE 167
Query: 113 AMKEFAVELEKVAXXXXXXXXXXXXXXXXXXKKVFYGSKGPTFGTKVSNYPPCPKPDLIK 172
A E+A L +A +K G + K++ YP CP+P+L
Sbjct: 168 ATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELAL 227
Query: 173 GLRAHTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSV 232
G+ AHTD + + + V GLQL + +WV + SIV ++GD LE+++NGKYKS+
Sbjct: 228 GVEAHTDVSALTFILHNX-VPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSI 286
Query: 233 LHRVIAQTEGNRMSIASFYNPGSDAVIY-PAPALVEKEA 270
LHR + E R+S A F P D ++ P P V E+
Sbjct: 287 LHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVES 325
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDEVSGLQLL-KDDQWVDVPPMKHSIVIN 216
++ +YPP PK AH D I LL +E GL++L +D QW+ + P +VIN
Sbjct: 172 RLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVIN 230
Query: 217 LGDQLEVITNGKYKSVLHRVI 237
+GD LE +TN S +HRV+
Sbjct: 231 IGDXLERLTNNVLPSTVHRVV 251
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 10/110 (9%)
Query: 158 KVSNYPPCPKPDLIKGLRA--HTDAGGIILLFQDDEVSGLQL-LKDDQWVDVPPMKHSIV 214
++ +YPP + +RA H D I +L +E GLQ+ KD W+DVP +I+
Sbjct: 153 RILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNII 211
Query: 215 INLGDQLEVITNGKYKSVLHRVIAQTEG-----NRMSIASFYNPGSDAVI 259
IN+GD L+ ++G + S HRVI EG +R+S+ F +P V+
Sbjct: 212 INIGDXLQEASDGYFPSTSHRVI-NPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 177 HTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRV 236
H D I +L+Q + V LQ+ + D+ +IN G + +TN YK+ +HRV
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
Query: 237 IAQTEGNRMSIASFYNPGSDAVIYP 261
R S+ F N G D+VI P
Sbjct: 273 -KWVNAERQSLPFFVNLGYDSVIDP 296
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 9/56 (16%)
Query: 3 NFPIIDLSKLNGDERSATM---EMINDACENWGFFELVNHGISHELLDTVQRLTKE 55
N P ID+S L GD+++A M + I+ A + GFF VNHGI+ VQRL+++
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN------VQRLSQK 57
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 177 HTDAGGIILLFQDDEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRV 236
H D I +L+Q + V LQ+ + D+ +IN G + +TN YK+ +HRV
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV 272
Query: 237 IAQTEGNRMSIASFYNPGSDAVIYP 261
R S+ F N G D+VI P
Sbjct: 273 -KWVNAERQSLPFFVNLGYDSVIDP 296
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 9/56 (16%)
Query: 3 NFPIIDLSKLNGDERSATM---EMINDACENWGFFELVNHGISHELLDTVQRLTKE 55
N P ID+S L GD+++A M + I+ A + GFF VNHGI+ VQRL+++
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN------VQRLSQK 57
>pdb|2JQQ|A Chain A, Solution Structure Of Saccharomyces Cerevisiae Conserved
Oligomeric Golgi Subunit 2 Protein (Cog2p)
Length = 204
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 9 LSKLNGDERSATMEMINDACENWG-----FFELVNHGISHELLDTVQRLTKEHYGKCMDQ 63
L L D+ S T E+I D E + L NH E L +RL+K + C +
Sbjct: 63 LDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIE 122
Query: 64 RFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVELE 122
++ + S +E ++ L S L SN I L +DY+ ++EF + L+
Sbjct: 123 PLEEEICSGLIE----QLYKLITASRRILESCADSNSPYIHHLRNDYQDLLQEFQISLK 177
>pdb|2XTL|A Chain A, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
pdb|2XTL|B Chain B, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
Length = 452
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 190 DEVSGLQLLKDDQWVDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVIAQTEGNRMSIAS 249
D V LQ+ D+WV+V K + + E + N K +RVI + G S
Sbjct: 183 DAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAK----TYRVIERVSGYAPEYVS 238
Query: 250 FYN 252
F N
Sbjct: 239 FVN 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,046,256
Number of Sequences: 62578
Number of extensions: 349595
Number of successful extensions: 751
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 14
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)