Query 021006
Match_columns 318
No_of_seqs 246 out of 1102
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 3.2E-39 7E-44 294.3 11.6 193 120-317 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.2 5.4E-12 1.2E-16 122.7 1.5 52 266-317 288-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.9E-10 4.1E-15 82.3 1.7 44 269-312 3-50 (50)
4 KOG4172 Predicted E3 ubiquitin 98.8 7.2E-11 1.6E-15 87.3 -4.6 50 269-318 8-62 (62)
5 KOG4275 Predicted E3 ubiquitin 98.7 9.7E-10 2.1E-14 104.9 -1.8 51 268-318 300-350 (350)
6 KOG1571 Predicted E3 ubiquitin 98.7 2.7E-09 5.9E-14 104.1 0.3 52 267-318 304-355 (355)
7 KOG0978 E3 ubiquitin ligase in 97.9 4.9E-05 1.1E-09 80.5 9.7 127 166-316 564-697 (698)
8 KOG1785 Tyrosine kinase negati 97.6 1.9E-05 4.1E-10 78.8 0.8 52 265-317 366-423 (563)
9 PF14634 zf-RING_5: zinc-RING 97.5 6.3E-05 1.4E-09 52.5 1.8 36 271-307 2-44 (44)
10 KOG0823 Predicted E3 ubiquitin 97.4 0.0001 2.3E-09 68.7 2.5 50 266-316 45-103 (230)
11 KOG0317 Predicted E3 ubiquitin 97.3 0.00014 3E-09 69.9 2.6 50 265-315 236-289 (293)
12 PF13923 zf-C3HC4_2: Zinc fing 97.3 0.00013 2.7E-09 49.6 1.6 34 271-305 1-39 (39)
13 PLN03208 E3 ubiquitin-protein 97.2 0.00024 5.2E-09 65.0 3.5 43 268-311 18-80 (193)
14 PHA02929 N1R/p28-like protein; 97.2 0.00027 5.9E-09 66.5 3.6 48 268-316 174-233 (238)
15 smart00184 RING Ring finger. E 97.1 0.00034 7.3E-09 44.9 2.1 34 271-305 1-39 (39)
16 PF14447 Prok-RING_4: Prokaryo 97.1 0.0003 6.4E-09 52.3 1.8 42 269-311 8-51 (55)
17 cd00162 RING RING-finger (Real 96.9 0.00068 1.5E-08 45.0 2.6 39 270-309 1-45 (45)
18 PF13639 zf-RING_2: Ring finge 96.8 0.00055 1.2E-08 47.4 1.5 36 270-306 2-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 96.5 0.0014 3.1E-08 44.3 1.5 34 271-305 1-41 (41)
20 KOG0320 Predicted E3 ubiquitin 96.3 0.0015 3.2E-08 59.2 1.2 49 268-317 131-187 (187)
21 KOG2164 Predicted E3 ubiquitin 96.3 0.0018 3.9E-08 66.5 1.9 48 268-316 186-244 (513)
22 COG5574 PEX10 RING-finger-cont 96.3 0.0019 4.1E-08 61.6 1.9 44 265-309 212-261 (271)
23 TIGR00599 rad18 DNA repair pro 96.1 0.0029 6.2E-08 63.7 2.0 44 267-311 25-72 (397)
24 PHA02926 zinc finger-like prot 95.8 0.0027 5.9E-08 59.5 0.5 47 267-314 169-234 (242)
25 KOG2177 Predicted E3 ubiquitin 95.8 0.0026 5.7E-08 56.4 0.3 39 268-307 13-55 (386)
26 PF15227 zf-C3HC4_4: zinc fing 95.7 0.0041 8.9E-08 43.3 0.8 34 271-305 1-42 (42)
27 PF13445 zf-RING_UBOX: RING-ty 95.0 0.008 1.7E-07 42.4 0.5 27 271-299 1-31 (43)
28 smart00504 Ubox Modified RING 94.9 0.016 3.5E-07 42.2 2.0 42 269-311 2-47 (63)
29 COG5432 RAD18 RING-finger-cont 94.9 0.013 2.8E-07 57.0 1.6 41 269-310 26-70 (391)
30 COG5236 Uncharacterized conser 94.5 0.019 4.1E-07 57.0 1.8 46 267-313 60-111 (493)
31 KOG4692 Predicted E3 ubiquitin 94.3 0.021 4.5E-07 56.9 1.6 44 266-310 420-467 (489)
32 KOG2879 Predicted E3 ubiquitin 94.0 0.043 9.3E-07 52.9 3.1 44 266-310 237-287 (298)
33 COG5540 RING-finger-containing 93.2 0.074 1.6E-06 52.1 3.2 43 267-310 322-372 (374)
34 KOG0287 Postreplication repair 93.0 0.03 6.5E-07 55.5 0.2 43 269-312 24-70 (442)
35 KOG0802 E3 ubiquitin ligase [P 92.2 0.051 1.1E-06 56.5 0.7 41 268-309 291-340 (543)
36 PF12678 zf-rbx1: RING-H2 zinc 91.6 0.12 2.6E-06 39.9 2.0 27 279-306 43-73 (73)
37 COG5243 HRD1 HRD ubiquitin lig 90.3 0.15 3.2E-06 51.3 1.7 43 266-309 285-344 (491)
38 PF14835 zf-RING_6: zf-RING of 90.2 0.13 2.9E-06 39.5 1.1 41 268-309 7-50 (65)
39 PF04641 Rtf2: Rtf2 RING-finge 90.2 0.26 5.6E-06 46.7 3.2 45 267-312 112-163 (260)
40 KOG2113 Predicted RNA binding 90.2 0.25 5.4E-06 48.7 3.1 48 268-315 343-392 (394)
41 PF15619 Lebercilin: Ciliary p 89.7 15 0.00032 33.7 14.1 94 123-222 50-151 (194)
42 KOG4628 Predicted E3 ubiquitin 88.4 0.33 7.1E-06 48.4 2.6 43 269-312 230-280 (348)
43 COG5152 Uncharacterized conser 87.7 0.19 4.1E-06 46.8 0.4 46 269-315 197-246 (259)
44 KOG1814 Predicted E3 ubiquitin 87.4 0.28 6E-06 49.8 1.4 41 268-309 184-239 (445)
45 KOG1813 Predicted E3 ubiquitin 87.3 0.21 4.6E-06 48.6 0.5 46 269-315 242-291 (313)
46 PF12240 Angiomotin_C: Angiomo 86.8 17 0.00037 33.9 12.5 83 125-216 63-163 (205)
47 KOG4159 Predicted E3 ubiquitin 85.7 0.34 7.3E-06 49.1 1.0 45 266-311 82-130 (398)
48 KOG3002 Zn finger protein [Gen 85.2 0.44 9.6E-06 46.5 1.5 43 267-311 47-92 (299)
49 PF04216 FdhE: Protein involve 84.8 1.7 3.6E-05 41.7 5.2 48 268-316 172-228 (290)
50 KOG1039 Predicted E3 ubiquitin 84.7 0.49 1.1E-05 47.1 1.6 48 266-314 159-225 (344)
51 KOG0804 Cytoplasmic Zn-finger 84.1 50 0.0011 34.4 15.4 94 122-215 327-429 (493)
52 KOG3039 Uncharacterized conser 83.4 0.8 1.7E-05 43.9 2.3 44 267-311 220-271 (303)
53 PF12126 DUF3583: Protein of u 80.5 49 0.0011 32.7 13.3 93 121-224 25-122 (324)
54 PF00038 Filament: Intermediat 79.8 56 0.0012 31.0 16.5 95 125-223 182-282 (312)
55 PF04710 Pellino: Pellino; In 79.3 0.61 1.3E-05 47.2 0.0 50 268-317 328-411 (416)
56 PF01166 TSC22: TSC-22/dip/bun 79.0 2.7 5.8E-05 31.8 3.3 30 175-204 14-43 (59)
57 PF09726 Macoilin: Transmembra 78.2 76 0.0017 34.7 15.3 54 169-222 546-599 (697)
58 KOG2932 E3 ubiquitin ligase in 78.0 0.89 1.9E-05 44.9 0.7 42 269-311 91-135 (389)
59 KOG3842 Adaptor protein Pellin 77.6 1.9 4.1E-05 42.8 2.9 53 265-317 338-424 (429)
60 PF04564 U-box: U-box domain; 76.8 2.3 4.9E-05 32.6 2.5 44 267-311 3-51 (73)
61 PF09726 Macoilin: Transmembra 76.6 45 0.00097 36.4 13.1 38 187-224 543-580 (697)
62 PF13815 Dzip-like_N: Iguana/D 76.4 12 0.00027 31.2 7.1 44 155-198 74-117 (118)
63 KOG0825 PHD Zn-finger protein 76.4 0.71 1.5E-05 50.4 -0.4 45 269-314 124-175 (1134)
64 KOG0288 WD40 repeat protein Ti 74.4 1.1E+02 0.0024 31.6 14.4 69 124-196 3-76 (459)
65 KOG0980 Actin-binding protein 73.9 1.5E+02 0.0033 33.4 16.1 53 169-221 453-505 (980)
66 PF07412 Geminin: Geminin; In 73.6 25 0.00055 32.7 8.9 62 140-216 105-166 (200)
67 TIGR01837 PHA_granule_1 poly(h 72.7 45 0.00098 28.1 9.6 66 130-195 44-116 (118)
68 PF12329 TMF_DNA_bd: TATA elem 71.6 46 0.00099 25.9 9.3 55 167-221 4-58 (74)
69 KOG2113 Predicted RNA binding 70.2 1.8 4E-05 42.8 0.7 49 267-315 135-188 (394)
70 KOG0971 Microtubule-associated 70.1 75 0.0016 36.0 12.7 49 174-222 447-502 (1243)
71 PF11559 ADIP: Afadin- and alp 70.1 54 0.0012 28.2 9.8 45 168-212 59-103 (151)
72 PF14362 DUF4407: Domain of un 69.8 1E+02 0.0023 29.3 13.7 58 128-196 106-163 (301)
73 KOG1001 Helicase-like transcri 69.4 1.7 3.7E-05 46.8 0.4 40 269-310 455-500 (674)
74 PF12325 TMF_TATA_bd: TATA ele 68.8 74 0.0016 27.2 13.5 92 117-222 17-108 (120)
75 COG5220 TFB3 Cdk activating ki 67.2 1.5 3.2E-05 42.1 -0.6 39 268-307 10-61 (314)
76 KOG4797 Transcriptional regula 67.1 30 0.00064 29.5 7.2 31 175-205 67-97 (123)
77 PF11544 Spc42p: Spindle pole 67.0 61 0.0013 25.8 8.5 40 167-206 11-50 (76)
78 PRK11637 AmiB activator; Provi 66.8 1.5E+02 0.0032 29.9 14.2 25 170-194 91-115 (428)
79 PF05121 GvpK: Gas vesicle pro 65.8 41 0.00088 27.5 7.5 38 160-197 27-67 (88)
80 KOG0828 Predicted E3 ubiquitin 64.7 2.1 4.6E-05 44.6 -0.0 43 268-311 571-635 (636)
81 PF00769 ERM: Ezrin/radixin/mo 64.6 25 0.00055 33.2 7.2 41 176-216 27-67 (246)
82 PF10272 Tmpp129: Putative tra 64.5 6.1 0.00013 39.7 3.1 34 265-309 300-350 (358)
83 KOG3859 Septins (P-loop GTPase 64.4 81 0.0017 31.5 10.6 21 184-204 379-399 (406)
84 COG4985 ABC-type phosphate tra 64.3 36 0.00078 32.7 8.0 88 117-221 158-246 (289)
85 KOG1734 Predicted RING-contain 63.7 4.2 9.1E-05 39.6 1.7 54 257-311 213-282 (328)
86 PF15397 DUF4618: Domain of un 62.7 1.5E+02 0.0033 28.6 12.4 81 126-206 134-224 (258)
87 KOG0612 Rho-associated, coiled 62.6 1.6E+02 0.0035 34.3 13.8 90 130-224 464-553 (1317)
88 KOG0977 Nuclear envelope prote 61.7 1.6E+02 0.0034 31.5 12.9 64 138-201 113-181 (546)
89 PRK00888 ftsB cell division pr 61.6 34 0.00075 28.3 6.6 37 168-204 27-63 (105)
90 smart00502 BBC B-Box C-termina 61.2 81 0.0018 25.0 10.9 48 121-172 29-76 (127)
91 KOG1103 Predicted coiled-coil 61.1 1.8E+02 0.0039 29.8 12.5 40 117-156 136-185 (561)
92 KOG4673 Transcription factor T 61.1 1.3E+02 0.0027 33.4 12.1 23 163-185 472-494 (961)
93 KOG0163 Myosin class VI heavy 61.0 2.2E+02 0.0047 32.1 13.9 27 127-153 918-948 (1259)
94 KOG0311 Predicted E3 ubiquitin 60.9 1.1 2.4E-05 44.8 -2.7 44 268-312 43-92 (381)
95 PF13935 Ead_Ea22: Ead/Ea22-li 60.5 72 0.0016 27.5 8.7 55 127-188 81-139 (139)
96 PF06785 UPF0242: Uncharacteri 60.0 1.6E+02 0.0035 29.8 11.9 25 125-150 94-118 (401)
97 PF10367 Vps39_2: Vacuolar sor 59.9 5.5 0.00012 31.5 1.6 28 269-297 79-108 (109)
98 KOG3091 Nuclear pore complex, 59.6 60 0.0013 34.1 9.2 21 176-196 377-397 (508)
99 PRK04863 mukB cell division pr 59.0 2.9E+02 0.0063 33.0 15.6 33 171-203 365-397 (1486)
100 PRK10884 SH3 domain-containing 58.9 1.5E+02 0.0033 27.4 12.9 16 138-153 100-115 (206)
101 PRK14140 heat shock protein Gr 58.8 43 0.00094 30.8 7.4 44 165-208 34-77 (191)
102 KOG0241 Kinesin-like protein [ 58.6 50 0.0011 37.7 8.8 47 157-203 378-425 (1714)
103 PF15254 CCDC14: Coiled-coil d 58.2 90 0.0019 34.7 10.6 79 118-196 457-557 (861)
104 PF10168 Nup88: Nuclear pore c 58.1 2.9E+02 0.0063 30.4 14.6 51 176-226 601-662 (717)
105 COG3074 Uncharacterized protei 57.8 39 0.00084 26.7 5.8 31 176-206 40-70 (79)
106 KOG4807 F-actin binding protei 57.5 2.4E+02 0.0053 29.3 13.5 78 124-201 364-447 (593)
107 COG1579 Zn-ribbon protein, pos 57.3 1.8E+02 0.0039 27.8 12.8 69 142-210 63-131 (239)
108 PF04799 Fzo_mitofusin: fzo-li 57.0 87 0.0019 28.5 8.8 78 134-222 79-163 (171)
109 smart00744 RINGv The RING-vari 57.0 8.1 0.00018 27.7 1.9 36 270-306 1-49 (49)
110 KOG0994 Extracellular matrix g 56.9 1.8E+02 0.0038 34.2 12.7 46 170-215 1607-1652(1758)
111 PF03854 zf-P11: P-11 zinc fin 56.6 4.1 8.8E-05 29.8 0.3 43 269-313 3-49 (50)
112 PF00170 bZIP_1: bZIP transcri 56.3 79 0.0017 23.3 8.7 35 184-218 28-62 (64)
113 PRK10884 SH3 domain-containing 55.1 1.8E+02 0.0038 27.0 11.5 21 177-197 134-154 (206)
114 PF04380 BMFP: Membrane fusoge 54.8 93 0.002 24.4 7.7 20 176-195 58-77 (79)
115 PF09731 Mitofilin: Mitochondr 54.7 2.7E+02 0.0059 29.0 15.7 28 183-210 379-406 (582)
116 PRK11637 AmiB activator; Provi 54.6 2.4E+02 0.0052 28.4 12.6 55 169-223 76-130 (428)
117 TIGR03752 conj_TIGR03752 integ 54.5 1.1E+02 0.0023 32.1 10.1 33 120-153 63-95 (472)
118 PF05290 Baculo_IE-1: Baculovi 54.2 4.3 9.3E-05 35.6 0.1 44 269-313 81-135 (140)
119 KOG4657 Uncharacterized conser 54.0 2.1E+02 0.0045 27.5 15.3 97 112-211 12-108 (246)
120 COG2433 Uncharacterized conser 53.6 1.6E+02 0.0034 32.0 11.3 11 68-78 332-342 (652)
121 PHA03415 putative internal vir 53.3 44 0.00094 37.3 7.3 87 118-204 298-397 (1019)
122 smart00338 BRLZ basic region l 53.2 90 0.002 23.0 8.1 32 184-215 28-59 (65)
123 PF10205 KLRAQ: Predicted coil 51.8 1.4E+02 0.0031 25.0 9.4 61 136-198 10-70 (102)
124 COG4942 Membrane-bound metallo 51.8 2.4E+02 0.0052 29.2 12.0 30 169-198 81-110 (420)
125 PF05335 DUF745: Protein of un 51.5 2E+02 0.0043 26.5 14.7 91 118-210 65-179 (188)
126 PRK00888 ftsB cell division pr 51.4 60 0.0013 26.8 6.5 29 169-197 35-63 (105)
127 PRK09039 hypothetical protein; 50.9 2.6E+02 0.0057 27.7 15.0 50 176-225 138-187 (343)
128 PF04111 APG6: Autophagy prote 50.3 1.3E+02 0.0027 29.6 9.5 105 118-225 11-128 (314)
129 KOG1002 Nucleotide excision re 50.1 4.4 9.4E-05 42.8 -0.6 41 268-309 536-585 (791)
130 PF12999 PRKCSH-like: Glucosid 50.0 94 0.002 28.4 7.9 32 170-201 141-172 (176)
131 PF11500 Cut12: Spindle pole b 49.2 1.7E+02 0.0037 26.2 9.3 35 155-196 92-126 (152)
132 smart00338 BRLZ basic region l 49.1 1.1E+02 0.0023 22.6 9.2 37 168-204 26-62 (65)
133 KOG3564 GTPase-activating prot 49.0 2.2E+02 0.0047 30.3 11.2 75 138-221 28-102 (604)
134 PF07888 CALCOCO1: Calcium bin 48.8 3.7E+02 0.008 28.8 14.7 39 172-210 203-241 (546)
135 PF14193 DUF4315: Domain of un 48.4 37 0.0008 27.3 4.5 24 173-196 6-29 (83)
136 PF08614 ATG16: Autophagy prot 47.3 2E+02 0.0043 25.9 9.7 17 123-139 74-90 (194)
137 PF10234 Cluap1: Clusterin-ass 46.2 1.5E+02 0.0033 28.7 9.2 57 130-188 161-217 (267)
138 PF06246 Isy1: Isy1-like splic 45.8 84 0.0018 30.2 7.3 29 168-196 71-99 (255)
139 PF00804 Syntaxin: Syntaxin; 45.8 1.4E+02 0.0029 22.9 9.8 84 137-222 13-102 (103)
140 PF07111 HCR: Alpha helical co 45.4 4.6E+02 0.01 29.0 15.0 23 124-146 95-123 (739)
141 cd00729 rubredoxin_SM Rubredox 45.4 8.5 0.00019 25.7 0.4 16 299-314 18-33 (34)
142 TIGR01069 mutS2 MutS2 family p 45.3 2.9E+02 0.0063 30.5 12.3 12 126-137 507-518 (771)
143 PF15070 GOLGA2L5: Putative go 45.2 4.3E+02 0.0094 28.6 14.2 85 123-210 163-255 (617)
144 PRK14139 heat shock protein Gr 44.8 71 0.0015 29.3 6.4 32 174-205 38-69 (185)
145 PRK02224 chromosome segregatio 44.4 4.6E+02 0.01 28.7 15.2 46 170-215 525-570 (880)
146 PRK13729 conjugal transfer pil 44.2 80 0.0017 33.0 7.4 29 175-203 90-118 (475)
147 PF08702 Fib_alpha: Fibrinogen 43.7 2.2E+02 0.0049 24.9 11.8 101 118-224 20-132 (146)
148 PF14570 zf-RING_4: RING/Ubox 43.0 9.6 0.00021 27.7 0.4 24 285-309 19-47 (48)
149 KOG4571 Activating transcripti 42.9 1.3E+02 0.0027 29.7 8.1 28 176-203 256-283 (294)
150 KOG0297 TNF receptor-associate 42.9 15 0.00033 37.0 1.9 46 268-314 21-71 (391)
151 PF06005 DUF904: Protein of un 42.5 1.6E+02 0.0035 22.9 11.6 23 182-204 39-61 (72)
152 PF08700 Vps51: Vps51/Vps67; 42.5 1.5E+02 0.0033 22.6 9.6 33 131-163 26-58 (87)
153 PRK14143 heat shock protein Gr 42.3 1.6E+02 0.0034 28.1 8.5 23 130-153 67-89 (238)
154 PRK11448 hsdR type I restricti 42.2 1E+02 0.0023 35.4 8.5 56 136-200 147-209 (1123)
155 PRK00409 recombination and DNA 41.4 4.4E+02 0.0095 29.2 12.9 13 125-137 511-523 (782)
156 PF00038 Filament: Intermediat 41.1 3.2E+02 0.0069 25.9 13.1 81 117-203 9-89 (312)
157 PRK14155 heat shock protein Gr 40.8 96 0.0021 28.9 6.7 30 176-205 21-50 (208)
158 PF11180 DUF2968: Protein of u 40.7 3E+02 0.0066 25.5 11.7 77 143-223 105-181 (192)
159 PRK00409 recombination and DNA 40.3 3.8E+02 0.0083 29.6 12.2 6 143-148 521-526 (782)
160 TIGR01562 FdhE formate dehydro 40.0 15 0.00032 36.2 1.3 42 268-309 184-234 (305)
161 PRK14157 heat shock protein Gr 40.0 1E+02 0.0022 29.3 6.8 19 136-154 82-100 (227)
162 cd00350 rubredoxin_like Rubred 39.9 8.7 0.00019 25.2 -0.2 16 299-314 17-32 (33)
163 PF14257 DUF4349: Domain of un 39.7 91 0.002 29.2 6.5 24 168-191 169-192 (262)
164 PF10779 XhlA: Haemolysin XhlA 39.6 1.7E+02 0.0037 22.3 7.6 40 174-213 5-44 (71)
165 PF05565 Sipho_Gp157: Siphovir 39.4 2.2E+02 0.0047 25.1 8.5 53 174-226 39-91 (162)
166 KOG4398 Predicted coiled-coil 39.1 1.4E+02 0.0031 29.5 7.7 55 131-190 9-65 (359)
167 KOG3068 mRNA splicing factor [ 38.6 1E+02 0.0022 29.7 6.5 41 154-194 46-95 (268)
168 PF08112 ATP-synt_E_2: ATP syn 38.6 1.7E+02 0.0036 21.9 7.2 47 130-184 7-53 (56)
169 PHA02562 46 endonuclease subun 38.5 4.5E+02 0.0098 26.9 13.8 47 158-204 203-249 (562)
170 PF12718 Tropomyosin_1: Tropom 38.2 2.7E+02 0.0058 24.2 13.5 61 161-222 74-134 (143)
171 COG1592 Rubrerythrin [Energy p 38.0 13 0.00027 33.6 0.5 31 268-314 134-164 (166)
172 TIGR02209 ftsL_broad cell divi 37.9 97 0.0021 23.7 5.4 35 169-203 25-59 (85)
173 PF10186 Atg14: UV radiation r 37.6 3.3E+02 0.0072 25.1 14.4 89 136-224 32-126 (302)
174 KOG4809 Rab6 GTPase-interactin 37.6 5.6E+02 0.012 27.7 13.0 28 170-197 326-353 (654)
175 PRK14158 heat shock protein Gr 37.6 1.6E+02 0.0034 27.3 7.5 11 140-150 49-59 (194)
176 PRK14159 heat shock protein Gr 37.5 1.1E+02 0.0024 27.8 6.4 18 184-201 39-56 (176)
177 PF04859 DUF641: Plant protein 37.4 2.3E+02 0.0051 24.6 8.1 68 118-190 47-123 (131)
178 PF14738 PaaSYMP: Solute carri 37.4 2.8E+02 0.006 24.7 8.8 53 130-182 94-146 (154)
179 COG5019 CDC3 Septin family pro 37.0 2.5E+02 0.0054 28.7 9.3 45 151-195 325-369 (373)
180 PF13747 DUF4164: Domain of un 36.5 2.3E+02 0.0049 22.8 11.9 43 171-213 35-77 (89)
181 PLN02189 cellulose synthase 36.4 25 0.00054 39.9 2.5 45 266-310 32-87 (1040)
182 KOG0980 Actin-binding protein 36.3 2.7E+02 0.0059 31.6 10.1 54 173-226 349-402 (980)
183 PF04977 DivIC: Septum formati 36.1 1.5E+02 0.0033 22.0 6.2 33 169-201 18-50 (80)
184 PRK14127 cell division protein 35.8 1.6E+02 0.0034 24.9 6.6 10 130-139 26-35 (109)
185 PRK14151 heat shock protein Gr 35.7 1.5E+02 0.0033 26.8 7.0 33 175-207 27-59 (176)
186 KOG4005 Transcription factor X 35.6 3.9E+02 0.0084 26.0 9.9 48 173-220 88-135 (292)
187 PF14282 FlxA: FlxA-like prote 35.6 2.1E+02 0.0046 23.5 7.4 53 174-226 18-74 (106)
188 PF14916 CCDC92: Coiled-coil d 35.4 1.1E+02 0.0025 23.2 5.1 29 160-188 13-41 (60)
189 PF10083 DUF2321: Uncharacteri 34.7 14 0.0003 33.2 0.2 25 291-315 30-55 (158)
190 PF09403 FadA: Adhesion protei 34.6 3E+02 0.0065 23.7 12.1 60 119-198 23-82 (126)
191 COG3937 Uncharacterized conser 34.4 1.3E+02 0.0028 25.6 5.8 17 147-163 62-78 (108)
192 PF04977 DivIC: Septum formati 34.2 1.2E+02 0.0026 22.6 5.3 37 170-206 26-62 (80)
193 KOG4643 Uncharacterized coiled 33.8 3.2E+02 0.007 31.5 10.3 68 154-221 174-244 (1195)
194 PRK15422 septal ring assembly 33.8 2.5E+02 0.0054 22.6 9.5 31 176-206 40-70 (79)
195 PRK10920 putative uroporphyrin 33.8 4.3E+02 0.0094 26.9 10.6 84 117-202 50-134 (390)
196 KOG2991 Splicing regulator [RN 33.6 2.7E+02 0.0059 27.3 8.6 30 174-203 176-205 (330)
197 PRK14148 heat shock protein Gr 33.6 1.7E+02 0.0037 27.0 7.1 30 176-205 48-77 (195)
198 COG4306 Uncharacterized protei 33.6 16 0.00035 32.0 0.4 25 291-315 30-55 (160)
199 PRK14161 heat shock protein Gr 33.5 2.8E+02 0.0061 25.1 8.4 31 176-206 27-57 (178)
200 PF05278 PEARLI-4: Arabidopsis 33.4 4.7E+02 0.01 25.6 13.8 23 169-191 201-223 (269)
201 PF04156 IncA: IncA protein; 33.1 3.4E+02 0.0073 23.8 14.3 50 170-219 125-174 (191)
202 PF08202 MIS13: Mis12-Mtw1 pro 33.1 56 0.0012 31.7 4.1 26 181-206 163-188 (301)
203 PRK04863 mukB cell division pr 33.1 9.4E+02 0.02 29.0 16.0 53 169-221 349-401 (1486)
204 PRK14154 heat shock protein Gr 32.9 2.2E+02 0.0047 26.6 7.7 19 132-151 54-72 (208)
205 COG2433 Uncharacterized conser 32.6 2.2E+02 0.0048 30.9 8.5 55 170-224 438-495 (652)
206 KOG1029 Endocytic adaptor prot 32.4 5.9E+02 0.013 28.9 11.7 20 175-194 444-463 (1118)
207 PRK14147 heat shock protein Gr 32.2 1.8E+02 0.0038 26.3 6.8 21 131-152 19-39 (172)
208 PF14662 CCDC155: Coiled-coil 32.1 4.2E+02 0.0091 24.6 12.8 80 140-225 38-117 (193)
209 PF08614 ATG16: Autophagy prot 32.1 3.1E+02 0.0068 24.6 8.5 8 125-132 86-93 (194)
210 KOG4661 Hsp27-ERE-TATA-binding 32.0 1.6E+02 0.0035 32.0 7.3 13 160-172 641-653 (940)
211 KOG3598 Thyroid hormone recept 31.8 81 0.0018 37.6 5.5 13 207-219 2190-2202(2220)
212 PF09730 BicD: Microtubule-ass 31.8 7.5E+02 0.016 27.4 14.1 67 123-189 48-135 (717)
213 PRK14162 heat shock protein Gr 31.7 2.1E+02 0.0046 26.4 7.4 28 177-204 48-75 (194)
214 KOG0982 Centrosomal protein Nu 31.4 6.4E+02 0.014 26.5 13.1 37 167-203 289-325 (502)
215 PHA02562 46 endonuclease subun 31.4 5.9E+02 0.013 26.1 14.0 31 168-198 358-388 (562)
216 PF08172 CASP_C: CASP C termin 31.3 1E+02 0.0022 29.4 5.4 20 183-202 94-113 (248)
217 PF12761 End3: Actin cytoskele 31.3 96 0.0021 28.8 5.0 24 176-199 97-120 (195)
218 PF13863 DUF4200: Domain of un 31.2 2.9E+02 0.0064 22.5 11.6 28 172-199 78-105 (126)
219 PRK14145 heat shock protein Gr 31.0 3.2E+02 0.007 25.3 8.5 26 128-154 43-68 (196)
220 PRK14153 heat shock protein Gr 30.8 2.1E+02 0.0046 26.4 7.2 29 176-204 41-69 (194)
221 PF07716 bZIP_2: Basic region 30.7 2E+02 0.0044 20.5 8.4 24 173-196 30-53 (54)
222 KOG0245 Kinesin-like protein [ 30.7 89 0.0019 35.9 5.5 55 134-193 364-427 (1221)
223 KOG3598 Thyroid hormone recept 30.6 91 0.002 37.2 5.6 6 146-151 2181-2186(2220)
224 KOG2817 Predicted E3 ubiquitin 30.4 19 0.00042 36.5 0.4 43 266-310 332-385 (394)
225 PRK13182 racA polar chromosome 30.3 4.1E+02 0.009 24.0 8.9 21 173-193 123-143 (175)
226 PF04642 DUF601: Protein of un 30.2 4.8E+02 0.01 25.6 9.6 30 181-210 258-287 (311)
227 PRK14156 heat shock protein Gr 29.9 1.7E+02 0.0038 26.5 6.4 35 173-207 32-66 (177)
228 PRK14163 heat shock protein Gr 29.9 2E+02 0.0042 27.1 6.9 23 131-154 41-63 (214)
229 PF14931 IFT20: Intraflagellar 29.9 3.5E+02 0.0076 23.0 9.4 22 192-213 97-118 (120)
230 KOG2391 Vacuolar sorting prote 29.9 4.8E+02 0.01 26.5 9.9 24 174-197 241-264 (365)
231 PF09787 Golgin_A5: Golgin sub 29.8 6.6E+02 0.014 26.2 11.7 59 166-224 360-427 (511)
232 PF03980 Nnf1: Nnf1 ; InterPr 29.7 2.7E+02 0.0059 22.5 7.0 70 125-196 32-101 (109)
233 KOG2129 Uncharacterized conser 29.7 6.8E+02 0.015 26.3 11.2 32 134-165 256-287 (552)
234 PHA02107 hypothetical protein 29.6 1.4E+02 0.003 27.4 5.6 34 163-196 179-212 (216)
235 PF12777 MT: Microtubule-bindi 29.6 3.5E+02 0.0075 26.6 9.0 53 170-222 230-282 (344)
236 TIGR01461 greB transcription e 29.4 1.7E+02 0.0036 25.8 6.1 17 175-191 45-61 (156)
237 PF14775 NYD-SP28_assoc: Sperm 29.2 2.5E+02 0.0054 21.1 7.4 48 137-193 11-58 (60)
238 KOG4421 Uncharacterized conser 29.1 2.1E+02 0.0046 29.5 7.4 51 134-185 126-176 (637)
239 KOG4445 Uncharacterized conser 29.1 12 0.00027 37.0 -1.2 44 267-311 114-187 (368)
240 PF08549 SWI-SNF_Ssr4: Fungal 29.0 32 0.00069 37.3 1.8 60 130-192 363-429 (669)
241 KOG1853 LIS1-interacting prote 29.0 5.7E+02 0.012 25.2 10.8 66 128-205 17-82 (333)
242 KOG3799 Rab3 effector RIM1 and 29.0 1.9E+02 0.0042 25.7 6.3 35 270-307 67-115 (169)
243 KOG0977 Nuclear envelope prote 28.9 7.5E+02 0.016 26.5 14.0 48 153-200 144-194 (546)
244 PRK01885 greB transcription el 28.5 1.9E+02 0.0041 25.5 6.3 8 212-219 63-70 (157)
245 KOG0994 Extracellular matrix g 28.5 8.2E+02 0.018 29.2 12.3 88 135-222 1560-1673(1758)
246 KOG3899 Uncharacterized conser 28.3 35 0.00077 33.8 1.8 46 252-308 301-363 (381)
247 KOG0243 Kinesin-like protein [ 28.0 1E+03 0.022 27.7 13.5 26 167-192 447-472 (1041)
248 PRK03564 formate dehydrogenase 27.9 58 0.0013 32.2 3.2 40 268-308 187-235 (309)
249 PF00435 Spectrin: Spectrin re 27.8 2.5E+02 0.0055 20.7 10.2 36 170-205 68-103 (105)
250 PRK06342 transcription elongat 27.7 1.3E+02 0.0028 26.8 5.1 12 125-136 36-47 (160)
251 PRK14164 heat shock protein Gr 27.7 1.9E+02 0.004 27.3 6.4 15 138-152 77-91 (218)
252 PF08654 DASH_Dad2: DASH compl 27.6 3.6E+02 0.0078 22.4 7.5 14 168-181 4-17 (103)
253 PF05911 DUF869: Plant protein 27.3 9.1E+02 0.02 27.0 13.1 31 130-160 48-78 (769)
254 PF11471 Sugarporin_N: Maltopo 27.3 1.4E+02 0.003 22.5 4.5 21 183-203 33-53 (60)
255 TIGR02680 conserved hypothetic 27.1 1.1E+03 0.024 27.9 14.0 87 139-225 231-319 (1353)
256 PRK14144 heat shock protein Gr 27.1 3.7E+02 0.008 25.0 8.1 19 185-203 62-80 (199)
257 PF06005 DUF904: Protein of un 27.0 3E+02 0.0066 21.4 9.4 51 170-220 20-70 (72)
258 PF11221 Med21: Subunit 21 of 26.9 4.1E+02 0.0088 22.9 8.0 19 119-137 72-90 (144)
259 cd00730 rubredoxin Rubredoxin; 26.9 25 0.00054 25.6 0.4 14 301-314 36-49 (50)
260 PRK14141 heat shock protein Gr 26.7 2.3E+02 0.0049 26.5 6.7 30 176-205 39-68 (209)
261 TIGR03545 conserved hypothetic 26.6 5.2E+02 0.011 27.6 10.1 18 139-156 165-182 (555)
262 PF14645 Chibby: Chibby family 26.5 2.6E+02 0.0055 23.7 6.5 47 173-219 69-115 (116)
263 KOG1940 Zn-finger protein [Gen 26.5 11 0.00025 36.5 -1.9 42 269-312 159-208 (276)
264 PRK14160 heat shock protein Gr 26.0 5E+02 0.011 24.3 8.8 32 174-205 67-98 (211)
265 PRK14714 DNA polymerase II lar 26.0 47 0.001 38.6 2.4 47 268-315 667-725 (1337)
266 PF08317 Spc7: Spc7 kinetochor 25.9 6.2E+02 0.014 24.6 14.2 53 170-222 211-263 (325)
267 TIGR03185 DNA_S_dndD DNA sulfu 25.8 8.3E+02 0.018 26.1 13.9 16 176-191 450-465 (650)
268 KOG0964 Structural maintenance 25.8 1.1E+03 0.024 27.5 12.8 86 129-216 388-488 (1200)
269 PF09744 Jnk-SapK_ap_N: JNK_SA 25.8 4.8E+02 0.01 23.3 14.3 97 120-223 3-109 (158)
270 KOG4218 Nuclear hormone recept 25.7 28 0.0006 35.3 0.6 25 269-297 16-40 (475)
271 PF05266 DUF724: Protein of un 25.5 5.2E+02 0.011 23.6 13.6 50 170-219 126-175 (190)
272 PF06210 DUF1003: Protein of u 25.5 2.5E+02 0.0055 23.5 6.2 30 113-142 51-80 (108)
273 KOG1150 Predicted molecular ch 25.4 5.2E+02 0.011 24.6 8.7 65 133-204 156-223 (250)
274 PF11471 Sugarporin_N: Maltopo 25.1 1.6E+02 0.0035 22.2 4.5 26 187-212 30-55 (60)
275 PF07888 CALCOCO1: Calcium bin 24.8 8.9E+02 0.019 26.0 15.7 21 198-218 292-312 (546)
276 PF12861 zf-Apc11: Anaphase-pr 24.8 49 0.0011 26.8 1.7 29 281-310 47-82 (85)
277 PF05008 V-SNARE: Vesicle tran 24.6 3.1E+02 0.0067 20.6 10.4 30 172-201 22-51 (79)
278 PRK14146 heat shock protein Gr 24.3 2.6E+02 0.0055 26.2 6.6 10 141-150 64-73 (215)
279 PRK09413 IS2 repressor TnpA; R 24.0 2E+02 0.0044 23.8 5.4 31 180-210 76-106 (121)
280 PF15070 GOLGA2L5: Putative go 24.0 9.5E+02 0.02 26.1 15.4 32 184-215 197-228 (617)
281 PF12718 Tropomyosin_1: Tropom 24.0 4.8E+02 0.01 22.6 11.8 44 168-211 28-71 (143)
282 KOG2660 Locus-specific chromos 23.9 15 0.00033 36.5 -1.6 45 268-313 15-64 (331)
283 KOG2391 Vacuolar sorting prote 23.7 7.8E+02 0.017 25.0 10.4 22 130-151 217-238 (365)
284 TIGR03185 DNA_S_dndD DNA sulfu 23.6 9.2E+02 0.02 25.8 12.5 51 140-193 184-234 (650)
285 PRK15365 type III secretion sy 23.6 3.3E+02 0.0071 22.9 6.3 43 154-196 48-94 (107)
286 TIGR01462 greA transcription e 23.6 2E+02 0.0043 24.9 5.5 14 208-221 54-67 (151)
287 PF12999 PRKCSH-like: Glucosid 23.6 4.9E+02 0.011 23.8 8.1 19 179-197 157-175 (176)
288 PF06657 Cep57_MT_bd: Centroso 23.6 3.7E+02 0.008 21.2 6.7 23 117-139 11-33 (79)
289 PRK13447 F0F1 ATP synthase sub 23.5 1.7E+02 0.0037 25.3 5.0 40 130-171 86-125 (136)
290 PF09731 Mitofilin: Mitochondr 23.2 8.7E+02 0.019 25.3 13.1 6 121-126 297-302 (582)
291 KOG3161 Predicted E3 ubiquitin 23.0 28 0.00062 37.8 0.1 38 269-308 12-55 (861)
292 PF04423 Rad50_zn_hook: Rad50 23.0 30 0.00065 24.9 0.2 10 301-310 22-31 (54)
293 PF05278 PEARLI-4: Arabidopsis 23.0 7.2E+02 0.016 24.3 13.8 24 184-207 209-232 (269)
294 PF13851 GAS: Growth-arrest sp 22.9 5.9E+02 0.013 23.3 10.3 38 167-204 92-129 (201)
295 PF03962 Mnd1: Mnd1 family; I 22.7 5.8E+02 0.013 23.1 11.2 29 171-199 99-127 (188)
296 PRK14127 cell division protein 22.7 2.1E+02 0.0045 24.1 5.2 30 176-205 38-67 (109)
297 TIGR02231 conserved hypothetic 22.7 8.6E+02 0.019 25.1 11.5 47 176-222 125-171 (525)
298 PHA01750 hypothetical protein 22.5 3.9E+02 0.0084 21.0 6.4 22 130-151 34-55 (75)
299 KOG1029 Endocytic adaptor prot 22.4 9.7E+02 0.021 27.3 11.2 21 177-198 395-415 (1118)
300 PF08549 SWI-SNF_Ssr4: Fungal 22.2 1.8E+02 0.0039 31.7 5.8 36 160-195 363-398 (669)
301 KOG3113 Uncharacterized conser 22.2 66 0.0014 31.3 2.3 47 268-315 111-163 (293)
302 KOG0824 Predicted E3 ubiquitin 22.1 50 0.0011 32.7 1.5 17 299-315 42-58 (324)
303 PF08432 Vfa1: AAA-ATPase Vps4 22.1 1.5E+02 0.0033 26.6 4.6 34 176-209 56-89 (182)
304 KOG0249 LAR-interacting protei 22.0 9.1E+02 0.02 27.2 10.8 54 136-189 168-227 (916)
305 KOG3819 Uncharacterized conser 21.9 8.3E+02 0.018 25.8 10.2 40 164-206 131-170 (513)
306 PF10805 DUF2730: Protein of u 21.8 4.5E+02 0.0098 21.6 9.3 30 169-198 29-58 (106)
307 KOG0006 E3 ubiquitin-protein l 21.7 49 0.0011 33.2 1.4 29 268-297 221-251 (446)
308 COG5175 MOT2 Transcriptional r 21.7 27 0.00059 35.2 -0.3 41 270-311 16-65 (480)
309 PRK14149 heat shock protein Gr 21.7 4.3E+02 0.0093 24.4 7.4 7 143-149 48-54 (191)
310 PF04508 Pox_A_type_inc: Viral 21.7 1.2E+02 0.0027 18.9 2.7 16 176-191 2-17 (23)
311 COG1196 Smc Chromosome segrega 21.7 1.3E+03 0.028 26.7 15.7 39 176-214 794-832 (1163)
312 PF07227 DUF1423: Protein of u 21.6 3.6E+02 0.0077 28.2 7.5 22 117-138 309-330 (446)
313 smart00503 SynN Syntaxin N-ter 21.5 4.1E+02 0.0089 21.0 11.2 84 137-224 14-103 (117)
314 PF11740 KfrA_N: Plasmid repli 21.3 4.4E+02 0.0095 21.2 9.5 19 171-189 98-116 (120)
315 TIGR01461 greB transcription e 21.2 2.3E+02 0.0049 25.0 5.4 25 198-222 47-71 (156)
316 PF07139 DUF1387: Protein of u 21.2 8.2E+02 0.018 24.3 11.2 46 173-218 226-272 (302)
317 KOG4466 Component of histone d 21.0 8.1E+02 0.018 24.2 10.2 17 184-200 118-134 (291)
318 TIGR02169 SMC_prok_A chromosom 20.8 1.2E+03 0.025 26.0 15.6 106 119-225 247-358 (1164)
319 KOG2068 MOT2 transcription fac 20.6 54 0.0012 32.7 1.4 46 267-313 248-301 (327)
320 PF13600 DUF4140: N-terminal d 20.6 2.2E+02 0.0048 22.6 4.9 29 173-201 75-103 (104)
321 PF05700 BCAS2: Breast carcino 20.6 6.7E+02 0.015 23.1 14.7 100 121-226 109-212 (221)
322 PLN03188 kinesin-12 family pro 20.6 1.4E+03 0.031 27.2 12.5 29 168-196 1204-1232(1320)
323 KOG3564 GTPase-activating prot 20.4 2.9E+02 0.0063 29.4 6.6 36 174-209 27-62 (604)
324 PF06936 Selenoprotein_S: Sele 20.3 5.5E+02 0.012 23.6 7.8 21 143-163 81-101 (190)
325 COG4357 Zinc finger domain con 20.3 54 0.0012 27.4 1.2 43 270-312 37-93 (105)
326 TIGR00414 serS seryl-tRNA synt 20.1 9.1E+02 0.02 24.5 10.2 19 207-225 87-105 (418)
327 PF10174 Cast: RIM-binding pro 20.1 1.2E+03 0.027 26.0 14.9 83 137-221 321-403 (775)
328 PF04859 DUF641: Plant protein 20.1 3.5E+02 0.0075 23.6 6.1 55 120-191 77-131 (131)
329 PF13514 AAA_27: AAA domain 20.0 1.3E+03 0.029 26.3 13.3 26 125-151 738-763 (1111)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-39 Score=294.30 Aligned_cols=193 Identities=46% Similarity=0.752 Sum_probs=172.3
Q ss_pred hhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 120 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ 199 (318)
Q Consensus 120 ~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~q 199 (318)
++++++++|..|||+|++.++++||..+.+.++++++.++.++|..+.++||+|++||++++++|++|+++++++.+|++
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCCCCCCcCCCCCccccccccCCCCcCcCCCcccccccccccccc
Q 021006 200 VWQAKARAQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGLMCTGEVAEDAESAYVDPDRVVSVPVSGPACKGCRKRVA 279 (318)
Q Consensus 200 aWQ~~A~~nEa~A~~Lr~~Lqqal~q~~~~~~~~~~~~~~~~~c~g~~aeDa~S~~~d~~r~~~~~~~~~~C~vC~~~~~ 279 (318)
.|+++|++||+++++|+.+|+|++.+. . ......+++..+|+..+.+|+.|+|++++........ .|+.|+++++
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~-~--~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~~~~~~--~Cr~C~~~~~ 169 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQC-P--ASAPAEERGQKSCGDREADDGKSSYVDPSVDNFKRMR--SCRKCGEREA 169 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhc-c--cccCchhhhccccCccccccccccccchhhhhhhccc--cceecCcCCc
Confidence 999999999999999999999999985 1 1112223334456667889999999988665432222 2999999999
Q ss_pred eeEEeCCCCcccccchHhhCCCCCCCccccCceEEEee
Q 021006 280 SVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFL 317 (318)
Q Consensus 280 ~vlLlPC~HlclC~~C~~~l~~CPvCr~~i~~~v~V~~ 317 (318)
+|+|+||+|+|+|..|...+..||+|+.+++++++|||
T Consensus 170 ~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred eEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 99999999999999999888999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.4e-12 Score=122.68 Aligned_cols=52 Identities=35% Similarity=0.945 Sum_probs=47.6
Q ss_pred cccccccccccccceeEEeCCCCcccccchHhhCC----CCCCCccccCceEEEee
Q 021006 266 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFL 317 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l~----~CPvCr~~i~~~v~V~~ 317 (318)
.++..|+||....+++++|||||+|+|..|+..++ .||+||.+|...++|+.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 34789999999999999999999999999998864 69999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.97 E-value=1.9e-10 Score=82.28 Aligned_cols=44 Identities=41% Similarity=0.957 Sum_probs=38.8
Q ss_pred ccccccccccceeEEeCCCCcccccchHhhC----CCCCCCccccCce
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSS 312 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~~i~~~ 312 (318)
..|.+|+++..+++++||||.++|..|...+ ..||+||.+|+.+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 5799999999999999999999999998886 7999999999763
No 4
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=7.2e-11 Score=87.30 Aligned_cols=50 Identities=26% Similarity=0.727 Sum_probs=45.3
Q ss_pred ccccccccccceeEEeCCCCcccccchHhhC-----CCCCCCccccCceEEEeeC
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDSSVEVFLS 318 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l-----~~CPvCr~~i~~~v~V~~S 318 (318)
..|.+|++.+.+.+|.-|||+|+|.+|...+ ..||+||.+|..+|+.|-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5799999999999999999999999998775 3799999999999988754
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=9.7e-10 Score=104.94 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=48.4
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 318 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l~~CPvCr~~i~~~v~V~~S 318 (318)
...|+||++.+++.+||||||.+.|..|...|..|||||..|...++||-+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 568999999999999999999999999999999999999999999999853
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.7e-09 Score=104.14 Aligned_cols=52 Identities=29% Similarity=0.691 Sum_probs=49.0
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 318 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l~~CPvCr~~i~~~v~V~~S 318 (318)
....|+||.+.+.+++|+||||+|+|..|...+..||+||..|...+++|.|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 4568999999999999999999999999999999999999999999999875
No 7
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4.9e-05 Score=80.49 Aligned_cols=127 Identities=20% Similarity=0.378 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCCCCCCcCCC
Q 021006 166 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGLMCTG 245 (318)
Q Consensus 166 ~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q~~~~~~~~~~~~~~~~~c~g 245 (318)
+.+.+...-.++++...+..++++.+.-+..|-..-....+-.|+.-..|+-.|+...... .+ +
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~------------~~----~ 627 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE------------SG----A 627 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------------cc----c
Confidence 4455555555666666666666666666666666666665555555555555554432110 00 0
Q ss_pred CCccccccccCCCCcCcCCCcccccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc--eEEEe
Q 021006 246 EVAEDAESAYVDPDRVVSVPVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS--SVEVF 316 (318)
Q Consensus 246 ~~aeDa~S~~~d~~r~~~~~~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~--~v~V~ 316 (318)
.+|...- ....+. .....|.+|..++.++++.-|+|+ +|..|... .+.||.|..++-. +..||
T Consensus 628 -s~d~~L~--EElk~y----K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 628 -SADEVLA--EELKEY----KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred -cccHHHH--HHHHHH----HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 1111100 000011 224589999999999999999998 99999654 6899999997643 44454
No 8
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.59 E-value=1.9e-05 Score=78.82 Aligned_cols=52 Identities=31% Similarity=0.610 Sum_probs=44.2
Q ss_pred CcccccccccccccceeEEeCCCCcccccchHhh------CCCCCCCccccCceEEEee
Q 021006 265 PVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV------VQACPLCFNVRDSSVEVFL 317 (318)
Q Consensus 265 ~~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~------l~~CPvCr~~i~~~v~V~~ 317 (318)
+..-..|+||-+++.+|-+-||||+ +|..|-.. -..||.||..|.+.-.|.+
T Consensus 366 gsTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 366 GSTFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred cchHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 4556789999999999999999999 89999544 3599999999998766643
No 9
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.46 E-value=6.3e-05 Score=52.52 Aligned_cols=36 Identities=28% Similarity=0.850 Sum_probs=30.3
Q ss_pred cccccccc---ceeEEeCCCCcccccchHhhCC----CCCCCcc
Q 021006 271 CKGCRKRV---ASVVLLPCRHLCVCTECDRVVQ----ACPLCFN 307 (318)
Q Consensus 271 C~vC~~~~---~~vlLlPC~HlclC~~C~~~l~----~CPvCr~ 307 (318)
|.+|++.. ...+|++|+|. +|..|...+. .||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77887765 45888999999 8999998876 9999984
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0001 Score=68.74 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=39.9
Q ss_pred cccccccccccccceeEEeCCCCcccccchHhh-------CCCCCCCccccCc--eEEEe
Q 021006 266 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-------VQACPLCFNVRDS--SVEVF 316 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-------l~~CPvCr~~i~~--~v~V~ 316 (318)
...-.|-||++...+-|+-+|||| +|..|--. .+.||||++.+.. +|.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 345689999999999999999999 89999533 3589999997654 44444
No 11
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00014 Score=69.86 Aligned_cols=50 Identities=26% Similarity=0.563 Sum_probs=39.8
Q ss_pred CcccccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccCceEEE
Q 021006 265 PVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 315 (318)
Q Consensus 265 ~~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~V 315 (318)
....+.|.+|.++..+--..||||+ +|..|-.. ...||+||....-+-.|
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCccee
Confidence 3556899999999988888899999 99999433 46899999977654433
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.27 E-value=0.00013 Score=49.57 Aligned_cols=34 Identities=35% Similarity=0.918 Sum_probs=27.1
Q ss_pred cccccccccee-EEeCCCCcccccchHhh----CCCCCCC
Q 021006 271 CKGCRKRVASV-VLLPCRHLCVCTECDRV----VQACPLC 305 (318)
Q Consensus 271 C~vC~~~~~~v-lLlPC~HlclC~~C~~~----l~~CPvC 305 (318)
|.+|++...+. +++||||. +|.+|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999988877 78999999 89999655 3689987
No 13
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.25 E-value=0.00024 Score=64.96 Aligned_cols=43 Identities=28% Similarity=0.592 Sum_probs=36.4
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh--------------------CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV--------------------VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~--------------------l~~CPvCr~~i~~ 311 (318)
...|.||.+...+.++.||+|+ +|..|... ...||+|+..+..
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4689999999999999999998 89999642 1379999998865
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.22 E-value=0.00027 Score=66.52 Aligned_cols=48 Identities=27% Similarity=0.617 Sum_probs=36.5
Q ss_pred cccccccccccce--------eEEeCCCCcccccchHhh----CCCCCCCccccCceEEEe
Q 021006 268 GPACKGCRKRVAS--------VVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEVF 316 (318)
Q Consensus 268 ~~~C~vC~~~~~~--------vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~V~ 316 (318)
...|.+|.+.-.. .++.||+|. +|..|-.. ...||+||.++.+.+...
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r 233 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSR 233 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeee
Confidence 3589999885321 466789997 99999643 459999999999877653
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.09 E-value=0.00034 Score=44.89 Aligned_cols=34 Identities=38% Similarity=1.021 Sum_probs=29.1
Q ss_pred ccccccccceeEEeCCCCcccccchHhh-----CCCCCCC
Q 021006 271 CKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLC 305 (318)
Q Consensus 271 C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvC 305 (318)
|.+|++.....+++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7889999889999999999 89999763 3579987
No 16
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.06 E-value=0.0003 Score=52.30 Aligned_cols=42 Identities=29% Similarity=0.628 Sum_probs=35.6
Q ss_pred ccccccccccceeEEeCCCCcccccchHhh--CCCCCCCccccCc
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRV--VQACPLCFNVRDS 311 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~--l~~CPvCr~~i~~ 311 (318)
..|..|......-+++||+|+ +|..|... ...||+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 478999988888888999999 79999654 6799999998764
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.93 E-value=0.00068 Score=45.03 Aligned_cols=39 Identities=38% Similarity=0.881 Sum_probs=29.7
Q ss_pred ccccccccc-ceeEEeCCCCcccccchHhh-----CCCCCCCcccc
Q 021006 270 ACKGCRKRV-ASVVLLPCRHLCVCTECDRV-----VQACPLCFNVR 309 (318)
Q Consensus 270 ~C~vC~~~~-~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i 309 (318)
.|.+|++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488999887 44555569999 89999753 35799998753
No 18
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.83 E-value=0.00055 Score=47.38 Aligned_cols=36 Identities=33% Similarity=0.816 Sum_probs=28.2
Q ss_pred ccccccccc---ceeEEeCCCCcccccchHhh----CCCCCCCc
Q 021006 270 ACKGCRKRV---ASVVLLPCRHLCVCTECDRV----VQACPLCF 306 (318)
Q Consensus 270 ~C~vC~~~~---~~vlLlPC~HlclC~~C~~~----l~~CPvCr 306 (318)
.|.||++.- ..++.+||+|. +|..|... -..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 588898754 47888999998 99999654 36999997
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.47 E-value=0.0014 Score=44.31 Aligned_cols=34 Identities=44% Similarity=1.023 Sum_probs=28.2
Q ss_pred ccccccccceeE-EeCCCCcccccchHhh------CCCCCCC
Q 021006 271 CKGCRKRVASVV-LLPCRHLCVCTECDRV------VQACPLC 305 (318)
Q Consensus 271 C~vC~~~~~~vl-LlPC~HlclC~~C~~~------l~~CPvC 305 (318)
|.+|.+.....+ ++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 788998888777 9999999 99999654 3479987
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0015 Score=59.22 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=36.6
Q ss_pred cccccccccccceeE-E-eCCCCcccccchHhh----CCCCCCCccccC--ceEEEee
Q 021006 268 GPACKGCRKRVASVV-L-LPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 317 (318)
Q Consensus 268 ~~~C~vC~~~~~~vl-L-lPC~HlclC~~C~~~----l~~CPvCr~~i~--~~v~V~~ 317 (318)
.-.|.||++...-.+ + --|||+ +|..|... ...||+|+..|+ .++.||+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 368999998765433 3 589999 99999765 369999997655 4666664
No 21
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0018 Score=66.50 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=39.7
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh---------CCCCCCCccccCc--eEEEe
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV---------VQACPLCFNVRDS--SVEVF 316 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~---------l~~CPvCr~~i~~--~v~V~ 316 (318)
...|.||++.+...++.-|||. +|..|--. ...||+|+..|.- ...|+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 7899999999999999999999 89999322 3599999998876 44443
No 22
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0019 Score=61.58 Aligned_cols=44 Identities=30% Similarity=0.652 Sum_probs=36.5
Q ss_pred CcccccccccccccceeEEeCCCCcccccchHhh------CCCCCCCcccc
Q 021006 265 PVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV------VQACPLCFNVR 309 (318)
Q Consensus 265 ~~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~------l~~CPvCr~~i 309 (318)
+.....|.+|.+.+-+..-.||||+ +|-.|--. ...||+||+..
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence 3456799999999999999999999 89999533 45799999854
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.10 E-value=0.0029 Score=63.69 Aligned_cols=44 Identities=30% Similarity=0.653 Sum_probs=36.4
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
....|.||.+.-..-+++||+|. +|..|... ...||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 35689999998888788999999 89999764 3479999998764
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=95.83 E-value=0.0027 Score=59.46 Aligned_cols=47 Identities=23% Similarity=0.548 Sum_probs=34.6
Q ss_pred cccccccccccc------c---eeEEeCCCCcccccchHhh----------CCCCCCCccccCceEE
Q 021006 267 SGPACKGCRKRV------A---SVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDSSVE 314 (318)
Q Consensus 267 ~~~~C~vC~~~~------~---~vlLlPC~HlclC~~C~~~----------l~~CPvCr~~i~~~v~ 314 (318)
....|.+|++.. . --+|.||+|. +|..|-.. ...||+||......+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 356899999752 1 2477899999 99999543 2359999998875543
No 25
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0026 Score=56.43 Aligned_cols=39 Identities=33% Similarity=0.739 Sum_probs=33.1
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhC----CCCCCCcc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFN 307 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~ 307 (318)
...|.||++.-..-.++||+|. +|..|.... -.||.|+.
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 4689999998777788999999 899998774 48999993
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.69 E-value=0.0041 Score=43.33 Aligned_cols=34 Identities=35% Similarity=0.836 Sum_probs=24.6
Q ss_pred ccccccccceeEEeCCCCcccccchHhhC--------CCCCCC
Q 021006 271 CKGCRKRVASVVLLPCRHLCVCTECDRVV--------QACPLC 305 (318)
Q Consensus 271 C~vC~~~~~~vlLlPC~HlclC~~C~~~l--------~~CPvC 305 (318)
|.||.+--.+-+.++|||. +|..|.... -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7889988888888999999 899996552 268887
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.00 E-value=0.008 Score=42.40 Aligned_cols=27 Identities=30% Similarity=0.981 Sum_probs=15.9
Q ss_pred ccccccccce----eEEeCCCCcccccchHhhC
Q 021006 271 CKGCRKRVAS----VVLLPCRHLCVCTECDRVV 299 (318)
Q Consensus 271 C~vC~~~~~~----vlLlPC~HlclC~~C~~~l 299 (318)
|.||++ ..+ -++|||||. +|..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 778887 545 577899999 899997653
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.93 E-value=0.016 Score=42.19 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=33.8
Q ss_pred ccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
..|.+|++--.+-++.||||. +|..|... -..||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 369999988777788899997 79999654 3589999998743
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.87 E-value=0.013 Score=57.03 Aligned_cols=41 Identities=27% Similarity=0.582 Sum_probs=35.4
Q ss_pred ccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccC
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRD 310 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~ 310 (318)
..|.||...-..-++-||||. +|.-|-.. -..||+||.+.-
T Consensus 26 lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence 479999999998899999999 89999766 369999998643
No 30
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.50 E-value=0.019 Score=57.04 Aligned_cols=46 Identities=26% Similarity=0.691 Sum_probs=38.8
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhhC------CCCCCCccccCceE
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV------QACPLCFNVRDSSV 313 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l------~~CPvCr~~i~~~v 313 (318)
..+.|.||-+.-.-+.++||+|. +|-.|+-.+ +.||+|+..-..++
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 35789999999888889999999 899998774 59999998765544
No 31
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.021 Score=56.90 Aligned_cols=44 Identities=23% Similarity=0.503 Sum_probs=35.3
Q ss_pred cccccccccccccceeEEeCCCCcccccchHhh-C---CCCCCCccccC
Q 021006 266 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-V---QACPLCFNVRD 310 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-l---~~CPvCr~~i~ 310 (318)
.....|+||+..+.+.+|-||+|. .|+.|-.. + +.|-.|...+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceee
Confidence 445699999999999999999999 79999654 3 46666766554
No 32
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.043 Score=52.89 Aligned_cols=44 Identities=27% Similarity=0.569 Sum_probs=35.4
Q ss_pred cccccccccccccce-eEEeCCCCcccccchHhhC------CCCCCCccccC
Q 021006 266 VSGPACKGCRKRVAS-VVLLPCRHLCVCTECDRVV------QACPLCFNVRD 310 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~-vlLlPC~HlclC~~C~~~l------~~CPvCr~~i~ 310 (318)
..+.+|++|.+.+.. .+..||+|. .|..|...- -.||.|.++..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 456799999999885 666789997 899997652 28999998765
No 33
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.074 Score=52.11 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=33.0
Q ss_pred cccccccccccc---ceeEEeCCCCcccccchHhh-----CCCCCCCccccC
Q 021006 267 SGPACKGCRKRV---ASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRD 310 (318)
Q Consensus 267 ~~~~C~vC~~~~---~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~ 310 (318)
.+-.|.+|.+.- -.++++||.|. +=..|-.+ -..||+||+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 346899998742 23777899998 78889655 249999999874
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=92.98 E-value=0.03 Score=55.47 Aligned_cols=43 Identities=28% Similarity=0.628 Sum_probs=36.8
Q ss_pred ccccccccccceeEEeCCCCcccccchHhhC----CCCCCCccccCce
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSS 312 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~~i~~~ 312 (318)
..|-||++--..-++.||+|. +|.-|-... ..||.|..+++.+
T Consensus 24 LRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 589999998888889999999 899997763 5999999877653
No 35
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.051 Score=56.49 Aligned_cols=41 Identities=34% Similarity=0.670 Sum_probs=34.5
Q ss_pred cccccccccccce-----eEEeCCCCcccccchHhh----CCCCCCCcccc
Q 021006 268 GPACKGCRKRVAS-----VVLLPCRHLCVCTECDRV----VQACPLCFNVR 309 (318)
Q Consensus 268 ~~~C~vC~~~~~~-----vlLlPC~HlclC~~C~~~----l~~CPvCr~~i 309 (318)
...|.||.+.-.. ...+||+|. ++..|-.. ...||+||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 4589999998777 789999998 89999544 57999999943
No 36
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=91.58 E-value=0.12 Score=39.92 Aligned_cols=27 Identities=33% Similarity=0.774 Sum_probs=19.9
Q ss_pred ceeEEeCCCCcccccchHhh----CCCCCCCc
Q 021006 279 ASVVLLPCRHLCVCTECDRV----VQACPLCF 306 (318)
Q Consensus 279 ~~vlLlPC~HlclC~~C~~~----l~~CPvCr 306 (318)
..+++.+|+|. +-..|... -..||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 45677899998 89999654 35999997
No 37
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.15 Score=51.33 Aligned_cols=43 Identities=28% Similarity=0.632 Sum_probs=30.5
Q ss_pred ccccccccccccc-------------ceeEEeCCCCcccccchHh----hCCCCCCCcccc
Q 021006 266 VSGPACKGCRKRV-------------ASVVLLPCRHLCVCTECDR----VVQACPLCFNVR 309 (318)
Q Consensus 266 ~~~~~C~vC~~~~-------------~~vlLlPC~HlclC~~C~~----~l~~CPvCr~~i 309 (318)
.....|.+|.+.- ..---|||||. +=-.|-. +-++||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 4567999999861 11244799996 6666743 357999999984
No 38
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=90.19 E-value=0.13 Score=39.50 Aligned_cols=41 Identities=29% Similarity=0.677 Sum_probs=21.0
Q ss_pred cccccccccccce-eEEeCCCCcccccchHhhC--CCCCCCcccc
Q 021006 268 GPACKGCRKRVAS-VVLLPCRHLCVCTECDRVV--QACPLCFNVR 309 (318)
Q Consensus 268 ~~~C~vC~~~~~~-vlLlPC~HlclC~~C~~~l--~~CPvCr~~i 309 (318)
...|.+|..--.. |.+.-|.|. +|..|.... ..||+|..|-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 3578899876554 456799999 999998663 6899999875
No 39
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.18 E-value=0.26 Score=46.66 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=35.4
Q ss_pred ccccccccccc----cceeEEeCCCCcccccchHhhCC---CCCCCccccCce
Q 021006 267 SGPACKGCRKR----VASVVLLPCRHLCVCTECDRVVQ---ACPLCFNVRDSS 312 (318)
Q Consensus 267 ~~~~C~vC~~~----~~~vlLlPC~HlclC~~C~~~l~---~CPvCr~~i~~~ 312 (318)
....|+|.+.. ..-|+|.||||. ++..+...+. .||+|..+....
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 34689888753 456888999998 7999987776 899999987653
No 40
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=90.17 E-value=0.25 Score=48.72 Aligned_cols=48 Identities=6% Similarity=-0.076 Sum_probs=41.3
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh--CCCCCCCccccCceEEE
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV--VQACPLCFNVRDSSVEV 315 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~--l~~CPvCr~~i~~~v~V 315 (318)
...|.+|..+-.+.++.||+|.-+|.+|+.. -..||+|.....-.|.|
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 4689999999999999999999999999875 24999999877666655
No 41
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.65 E-value=15 Score=33.72 Aligned_cols=94 Identities=22% Similarity=0.299 Sum_probs=64.3
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Q 021006 123 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA--------AQL 194 (318)
Q Consensus 123 ~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErl--------rql 194 (318)
..++....+|.++|..|.+.+|.-=+..|+- ..-+..+-++||++++||.++...+..|..-+ ..|
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~------q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL 123 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKS------QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL 123 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 3456667788888999999888777766642 23345566899999999998877766544321 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 195 SVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 195 ~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
......-...+.+++..+..|..+++.+
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677777777777777664
No 42
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=0.33 Score=48.36 Aligned_cols=43 Identities=23% Similarity=0.539 Sum_probs=29.7
Q ss_pred ccccccccc---cceeEEeCCCCcccccchHhh-----CCCCCCCccccCce
Q 021006 269 PACKGCRKR---VASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSS 312 (318)
Q Consensus 269 ~~C~vC~~~---~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~~ 312 (318)
-.|.||.+. .-.+.+|||.|- +=..|-.. -..||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 489999874 234666899998 44456332 24699999877653
No 43
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=87.70 E-value=0.19 Score=46.76 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=38.5
Q ss_pred ccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccCceEEE
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 315 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~V 315 (318)
..|.+|...-.+-++--|||. +|..|+.. -..|-+|.....+...|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 389999998888888899999 89999876 36999999887766543
No 44
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.43 E-value=0.28 Score=49.78 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=31.4
Q ss_pred cccccccccccc---eeEEeCCCCcccccchHhhC------------CCCCCCcccc
Q 021006 268 GPACKGCRKRVA---SVVLLPCRHLCVCTECDRVV------------QACPLCFNVR 309 (318)
Q Consensus 268 ~~~C~vC~~~~~---~vlLlPC~HlclC~~C~~~l------------~~CPvCr~~i 309 (318)
.-.|.||++... ++.|+||+|+ +|..|.... -.||-|...-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 458999998654 6999999998 899996551 2787765543
No 45
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=0.21 Score=48.62 Aligned_cols=46 Identities=28% Similarity=0.530 Sum_probs=38.7
Q ss_pred ccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccCceEEE
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 315 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~V 315 (318)
..|.+|+.--.+-|+--|+|. +|..|+.. -..|++|...+.++..+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 469999988777777899999 89999866 25899999999887654
No 46
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=86.78 E-value=17 Score=33.90 Aligned_cols=83 Identities=23% Similarity=0.318 Sum_probs=62.1
Q ss_pred hhhhHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Q 021006 125 IKRQRDELDQFLQAQGEQLR---RALAEKRQRHYRALLGAAEESIARLLR---------------EKEAEVEKATRRNAE 186 (318)
Q Consensus 125 l~~q~~EiD~~i~~q~ErlR---~~l~E~r~r~~r~ll~avE~~~~~rLR---------------eKeeEle~a~rrn~E 186 (318)
.++-++.-.++|.+++|-.+ ++|+|---||... .|++.+++.|.+ --++||-.+++|+.|
T Consensus 63 ~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~--dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qe 140 (205)
T PF12240_consen 63 KELLREKEERILALEADMTKWEQKYLEESAMRQFAM--DAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQE 140 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHH
Confidence 34445566799999998776 5688887777654 344555566666 337899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 187 LEARAAQLSVEAQVWQAKARAQEATAASLQ 216 (318)
Q Consensus 187 LEErlrql~~E~qaWQ~~A~~nEa~A~~Lr 216 (318)
+|-||+.|.+. ..+.+||+..|+
T Consensus 141 mE~RIK~Lhaq-------I~EKDAmIkVLQ 163 (205)
T PF12240_consen 141 MENRIKALHAQ-------IAEKDAMIKVLQ 163 (205)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 99999998764 457788998875
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=0.34 Score=49.08 Aligned_cols=45 Identities=31% Similarity=0.615 Sum_probs=35.1
Q ss_pred cccccccccccccceeEEeCCCCcccccchH----hhCCCCCCCccccCc
Q 021006 266 VSGPACKGCRKRVASVVLLPCRHLCVCTECD----RVVQACPLCFNVRDS 311 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~----~~l~~CPvCr~~i~~ 311 (318)
...-.|.||+..--.-+..||||. .|..|- ..-..||.|+.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 345689999887666666699999 899993 234699999988764
No 48
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.21 E-value=0.44 Score=46.47 Aligned_cols=43 Identities=23% Similarity=0.605 Sum_probs=33.3
Q ss_pred ccccccccccccceeEEeCC--CCcccccchHhh-CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPC--RHLCVCTECDRV-VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC--~HlclC~~C~~~-l~~CPvCr~~i~~ 311 (318)
.-..|.+|++.-..-++ -| ||+ +|..|-.. ...||.|+.++..
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 34689999987665444 45 799 89999844 5799999999873
No 49
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=84.84 E-value=1.7 Score=41.66 Aligned_cols=48 Identities=29% Similarity=0.488 Sum_probs=24.6
Q ss_pred cccccccccccceeEEeCC-----CCcccccchHhh----CCCCCCCccccCceEEEe
Q 021006 268 GPACKGCRKRVASVVLLPC-----RHLCVCTECDRV----VQACPLCFNVRDSSVEVF 316 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC-----~HlclC~~C~~~----l~~CPvCr~~i~~~v~V~ 316 (318)
...|+||+..+.-.++.+= ||+ .|..|... --.||.|.......+..|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4689999999887777654 455 79999755 239999999888877665
No 50
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.73 E-value=0.49 Score=47.09 Aligned_cols=48 Identities=23% Similarity=0.522 Sum_probs=37.0
Q ss_pred cccccccccccccceeE-----E---eCCCCcccccchHhh-----------CCCCCCCccccCceEE
Q 021006 266 VSGPACKGCRKRVASVV-----L---LPCRHLCVCTECDRV-----------VQACPLCFNVRDSSVE 314 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~vl-----L---lPC~HlclC~~C~~~-----------l~~CPvCr~~i~~~v~ 314 (318)
.....|-||++.-.... | .+|.|. +|..|... .+.||.||.+...++.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 34579999999876665 4 679998 89999543 3699999998776553
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.08 E-value=50 Score=34.42 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=70.2
Q ss_pred hhhhhhhHH----HHHHHHHHhHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 122 ASPIKRQRD----ELDQFLQAQGEQLRRALA----EKRQ-RHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAA 192 (318)
Q Consensus 122 ~~~l~~q~~----EiD~~i~~q~ErlR~~l~----E~r~-r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlr 192 (318)
.++|+-|+. .+-.|.+.|.+.++..++ |.+. .+-...+.++...+-+||.+...-+.+..+..+++.|-=+
T Consensus 327 ~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENK 406 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554443 444555566666666555 4444 6677788899999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 193 QLSVEAQVWQAKARAQEATAASL 215 (318)
Q Consensus 193 ql~~E~qaWQ~~A~~nEa~A~~L 215 (318)
-|...-++|+..+++-+..-+.+
T Consensus 407 ~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 407 KLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 88899999999987776653333
No 52
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.40 E-value=0.8 Score=43.94 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=35.5
Q ss_pred ccccccccccc----cceeEEeCCCCcccccchHhhC----CCCCCCccccCc
Q 021006 267 SGPACKGCRKR----VASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~----~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~~i~~ 311 (318)
..-.|.+|.+. ..+++|-||||. +|.+|..++ ..||+|..+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 34589999874 457889999998 799998875 499999887654
No 53
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=80.54 E-value=49 Score=32.69 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=59.6
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 121 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQV 200 (318)
Q Consensus 121 l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qa 200 (318)
..++|.+.+.|+..+|+.+..+|-..++ ++-+.||.+|+.. -..+-+.+..+.+-|+.-|.++++-..-
T Consensus 25 av~qL~~~r~~teelIr~rVrq~V~hVq----aqEreLLe~v~~r-------YqR~y~ema~~L~~LeavLqRir~G~~L 93 (324)
T PF12126_consen 25 AVSQLGRARADTEELIRARVRQVVAHVQ----AQERELLEAVEAR-------YQRDYEEMAGQLGRLEAVLQRIRTGGAL 93 (324)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHhHHHH
Confidence 3578999999999999998877665554 4558899888854 2234445566677777777777776555
Q ss_pred HHHHHHHH---HH--HHHHHHHHHHHHHH
Q 021006 201 WQAKARAQ---EA--TAASLQAQLQQAIM 224 (318)
Q Consensus 201 WQ~~A~~n---Ea--~A~~Lr~~Lqqal~ 224 (318)
-++.-.|. |- |=.-|+..|..+..
T Consensus 94 VekM~~YASDQEVLdMh~FlreAL~rLrq 122 (324)
T PF12126_consen 94 VEKMKLYASDQEVLDMHGFLREALERLRQ 122 (324)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhhh
Confidence 54443332 21 33445555555443
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.84 E-value=56 Score=31.00 Aligned_cols=95 Identities=26% Similarity=0.423 Sum_probs=65.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 021006 125 IKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAE--ESIARLLREKEAEVEKATRRNAELEARAAQLS----VEA 198 (318)
Q Consensus 125 l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE--~~~~~rLReKeeEle~a~rrn~ELEErlrql~----~E~ 198 (318)
+.+-+.|++.+.+.+.+.++........ .+-.+=+ ...-..+.....||+.+..+|..||.++..+. .+.
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~~~~----~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~ 257 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEKSSE----ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhccccccccccccccccc----ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH
Confidence 4455667777777777777766554332 1111111 13345577888899999999999999997664 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 199 QVWQAKARAQEATAASLQAQLQQAI 223 (318)
Q Consensus 199 qaWQ~~A~~nEa~A~~Lr~~Lqqal 223 (318)
+.|+.....-|+....|+..+.+.+
T Consensus 258 ~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 258 EEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHH
Confidence 7788888888888888888876644
No 55
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=79.27 E-value=0.61 Score=47.20 Aligned_cols=50 Identities=26% Similarity=0.569 Sum_probs=0.0
Q ss_pred ccccccccc-------------------ccceeEEeCCCCccccc----chHhh--------CCCCCCCccccCc---eE
Q 021006 268 GPACKGCRK-------------------RVASVVLLPCRHLCVCT----ECDRV--------VQACPLCFNVRDS---SV 313 (318)
Q Consensus 268 ~~~C~vC~~-------------------~~~~vlLlPC~HlclC~----~C~~~--------l~~CPvCr~~i~~---~v 313 (318)
.+.|.+|+. .+.+.+|.||||.|.=+ .+... -..||.|-.++.+ +|
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~v 407 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYV 407 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCce
Confidence 567888874 34567889999986211 11111 1499999998876 56
Q ss_pred EEee
Q 021006 314 EVFL 317 (318)
Q Consensus 314 ~V~~ 317 (318)
+++|
T Consensus 408 rLiF 411 (416)
T PF04710_consen 408 RLIF 411 (416)
T ss_dssp ----
T ss_pred EEEE
Confidence 6554
No 56
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.02 E-value=2.7 Score=31.85 Aligned_cols=30 Identities=37% Similarity=0.426 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 175 AEVEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 175 eEle~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
+|+|-.+.++++|+++..+|..||...+..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999877554
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.16 E-value=76 Score=34.66 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
|.|+.|.||.+.++..+..||+++.+..|.+..+..-++++.-+-.|-+.|.-+
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~am 599 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAM 599 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 567777888888888888888888888888766665344444445555555433
No 58
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=78.00 E-value=0.89 Score=44.88 Aligned_cols=42 Identities=33% Similarity=0.823 Sum_probs=30.3
Q ss_pred ccccccccccce-eEEeCCCCcccccchHhh--CCCCCCCccccCc
Q 021006 269 PACKGCRKRVAS-VVLLPCRHLCVCTECDRV--VQACPLCFNVRDS 311 (318)
Q Consensus 269 ~~C~vC~~~~~~-vlLlPC~HlclC~~C~~~--l~~CPvCr~~i~~ 311 (318)
-.|.-|..--.. --++||.|. +|.+|+.. .+.||.|-..+..
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred EeecccCCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence 478888654332 224699998 99999876 4599999876654
No 59
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=77.62 E-value=1.9 Score=42.78 Aligned_cols=53 Identities=21% Similarity=0.491 Sum_probs=32.3
Q ss_pred Ccccccccccccc-------------------cceeEEeCCCCcccccchH-hh-----------CCCCCCCccccCc--
Q 021006 265 PVSGPACKGCRKR-------------------VASVVLLPCRHLCVCTECD-RV-----------VQACPLCFNVRDS-- 311 (318)
Q Consensus 265 ~~~~~~C~vC~~~-------------------~~~vlLlPC~HlclC~~C~-~~-----------l~~CPvCr~~i~~-- 311 (318)
+...+.|.+|+.- +.+..|-||||+|.=+.=. +. -..||.|-....+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 4556788888753 3445667999986322211 00 1389999887654
Q ss_pred -eEEEee
Q 021006 312 -SVEVFL 317 (318)
Q Consensus 312 -~v~V~~ 317 (318)
.|+++|
T Consensus 418 ~~ikliF 424 (429)
T KOG3842|consen 418 GYIKLIF 424 (429)
T ss_pred ceEEEEE
Confidence 555443
No 60
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=76.77 E-value=2.3 Score=32.61 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=31.3
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 311 (318)
....|.+|++--.+-+++||||. .+..|-.. -..||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35689999999999999999976 78888543 3579999988775
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.62 E-value=45 Score=36.38 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 187 LEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 224 (318)
Q Consensus 187 LEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~ 224 (318)
+..|.++|..|...-+...+..|.....|..+++.+..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666654443
No 62
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=76.44 E-value=12 Score=31.22 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 155 YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 155 ~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
++..|...-...-.++++...+++++..+++++.+.++.+..|+
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555567888999999999999999999999998875
No 63
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.44 E-value=0.71 Score=50.35 Aligned_cols=45 Identities=22% Similarity=0.390 Sum_probs=32.3
Q ss_pred ccccccccccceeEE---eCCCCcccccchHhh----CCCCCCCccccCceEE
Q 021006 269 PACKGCRKRVASVVL---LPCRHLCVCTECDRV----VQACPLCFNVRDSSVE 314 (318)
Q Consensus 269 ~~C~vC~~~~~~vlL---lPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~ 314 (318)
..|.+|...-.+-+. .+|.|. +|..|... ..+||+||.....++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 467777765443332 499999 89999655 5799999987766553
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.38 E-value=1.1e+02 Score=31.62 Aligned_cols=69 Identities=28% Similarity=0.355 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 124 PIKRQRDELDQFLQAQGEQLRRALAEKRQRH-----YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 124 ~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~-----~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
+++++..+.|+=+ ++++..|++.-+++ ...++.+--+++-.+|-+||.||.++.+.|-.|.|+.-+..+
T Consensus 3 ~~~s~~s~~dqr~----~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 3 PLYSQKSENDQRL----IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred hhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666422 22333333333222 234555566677788999999999999999988764444444
No 65
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.90 E-value=1.5e+02 Score=33.42 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 221 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqq 221 (318)
.|--.+.-++.+.+.|.+|++.+.++.-+...|-.+.++...+...|+.+|.-
T Consensus 453 Qle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~ 505 (980)
T KOG0980|consen 453 QLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELAL 505 (980)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33334445567788899999999999999999988887777776666666544
No 66
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=73.60 E-value=25 Score=32.66 Aligned_cols=62 Identities=27% Similarity=0.297 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 140 GEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 216 (318)
Q Consensus 140 ~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr 216 (318)
.+.-|..|+|+|+ .+|-.+++ |.+++.+.+-.+++-++.|..|+...+.+|...+.+|..+.
T Consensus 105 se~YWk~lAE~RR---~AL~eaL~------------ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie 166 (200)
T PF07412_consen 105 SENYWKELAEERR---KALEEALE------------ENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIE 166 (200)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH---HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888887 33333333 55555555666666667777777777777776666666653
No 67
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=72.72 E-value=45 Score=28.09 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKRQ---RHYRALLGAAEESIARLLREKE----AEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r~---r~~r~ll~avE~~~~~rLReKe----eEle~a~rrn~ELEErlrql~ 195 (318)
.-||.++..-.|.++..+.+.+. .+...+=.+++..+.+-|...+ +||+.+..|+.+|+.++..|.
T Consensus 44 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 44 KRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555553 2334555566666666666554 789999999999998888775
No 68
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=71.59 E-value=46 Score=25.90 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 221 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqq 221 (318)
.++|++||+.|+........|...--+...-.-..+....++|..+..|...++.
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777765554433333322222222222333334444444444444433
No 69
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=70.16 E-value=1.8 Score=42.82 Aligned_cols=49 Identities=6% Similarity=0.059 Sum_probs=39.4
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCceEEE
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEV 315 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~~v~V 315 (318)
..-.|..|+.+..-+.+.||+|-++|..|... ...||+|.........|
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 34589999999999999999999999988544 45799998766654443
No 70
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.10 E-value=75 Score=36.02 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQ-------VWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~q-------aWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
|+=++...-+|.+||||++.|..+.. .--.+++.|......|+.+|+++
T Consensus 447 E~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788888888888877553 34446677777788888888876
No 71
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.06 E-value=54 Score=28.16 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATA 212 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A 212 (318)
.+++.++.++++....+..|++++..+..|...++......+...
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666665555555444444433
No 72
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=69.77 E-value=1e+02 Score=29.31 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 128 QRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 128 q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
=+.|||+-|... +.....+....+......++.+.+.++......+.+++..+..+..
T Consensus 106 F~~eI~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 106 FEKEIDQKLDEI-----------RQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666555443 4444444455555555566666666666666666666666666555
No 73
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=69.36 E-value=1.7 Score=46.81 Aligned_cols=40 Identities=35% Similarity=0.745 Sum_probs=33.4
Q ss_pred ccccccccccceeEEeCCCCcccccchHhhC------CCCCCCccccC
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRVV------QACPLCFNVRD 310 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l------~~CPvCr~~i~ 310 (318)
..|.+|.+ ..+.++.+|+|. .|.+|-... ..||+|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 778888999999 899996542 37999998654
No 74
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.76 E-value=74 Score=27.17 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=59.4
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 117 LSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 117 l~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
+-.-|.+.|.+-..||..+ +.+..+| +..|..-...|++..+ ..+++.....+..+|+..++.+..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l-~~el~~l----~~~r~~l~~Eiv~l~~---------~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASL-QEELARL----EAERDELREEIVKLME---------ENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888654 4444443 3334444455554443 555666666666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 197 EAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 197 E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
..++--..--+....+..|++.++.+
T Consensus 83 ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 83 RYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 67766666666667777777777664
No 75
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=67.17 E-value=1.5 Score=42.08 Aligned_cols=39 Identities=26% Similarity=0.738 Sum_probs=28.0
Q ss_pred cccccccccc-----cceeEEeC-CCCcccccchHhhC-----CCCC--CCcc
Q 021006 268 GPACKGCRKR-----VASVVLLP-CRHLCVCTECDRVV-----QACP--LCFN 307 (318)
Q Consensus 268 ~~~C~vC~~~-----~~~vlLlP-C~HlclC~~C~~~l-----~~CP--vCr~ 307 (318)
...|++|... ...+++-| |.|. +|..|..++ ..|| .|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 4579999752 23344458 9999 899998774 4899 6764
No 76
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=67.11 E-value=30 Score=29.52 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 175 AEVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 175 eEle~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
||+|-.+.++.||+||..+|+.|+...+..+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4888889999999999999999998887664
No 77
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=67.05 E-value=61 Score=25.84 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
-.+|+.|++||++.+.-...|..++.....-+-..+....
T Consensus 11 ~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~ 50 (76)
T PF11544_consen 11 KKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLL 50 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999888777766655544433
No 78
>PRK11637 AmiB activator; Provisional
Probab=66.77 E-value=1.5e+02 Score=29.89 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQL 194 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql 194 (318)
|++.+.+|+.+..+...+++.+..+
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 79
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=65.83 E-value=41 Score=27.51 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 160 GAAEESIARLLRE---KEAEVEKATRRNAELEARAAQLSVE 197 (318)
Q Consensus 160 ~avE~~~~~rLRe---KeeEle~a~rrn~ELEErlrql~~E 197 (318)
..+|+.+.+|+-. -++|||++..-.+.||+++.+++..
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555565533 5899999999999999999998875
No 80
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.75 E-value=2.1 Score=44.64 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=29.6
Q ss_pred cccccccccc-----------------cceeEEeCCCCcccccchHhh-CC----CCCCCccccCc
Q 021006 268 GPACKGCRKR-----------------VASVVLLPCRHLCVCTECDRV-VQ----ACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~-----------------~~~vlLlPC~HlclC~~C~~~-l~----~CPvCr~~i~~ 311 (318)
...|+||... .+..+|-||.|. .=..|-.. |+ .||+||.++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4579999852 123556699998 66777433 32 89999998753
No 81
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=64.62 E-value=25 Score=33.20 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 216 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr 216 (318)
+|.+...+...|++.++++..|..-....+.+.+.+...|.
T Consensus 27 ~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 27 ALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555444443
No 82
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=64.52 E-value=6.1 Score=39.69 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=25.6
Q ss_pred CcccccccccccccceeEEeCCCCcccccchHhhC-----------------CCCCCCcccc
Q 021006 265 PVSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----------------QACPLCFNVR 309 (318)
Q Consensus 265 ~~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l-----------------~~CPvCr~~i 309 (318)
....+.|..|+-+|.. |.+|..+- -.||.||+..
T Consensus 300 ~~~~~~C~~C~CRPmW-----------C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 300 LPNEPPCQQCYCRPMW-----------CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred cccCCCCccccccchH-----------HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 3556799999877765 88996551 2999999863
No 83
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.41 E-value=81 Score=31.52 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 184 NAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 184 n~ELEErlrql~~E~qaWQ~~ 204 (318)
.+.|||..++|..|..+++.+
T Consensus 379 k~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 379 KKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666554
No 84
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=64.29 E-value=36 Score=32.72 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=43.9
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 021006 117 LSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELE-ARAAQLS 195 (318)
Q Consensus 117 l~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELE-Erlrql~ 195 (318)
.||.+..+|++.-.++|.+ +.-+-+...++++.+=.-+| |||-++-.+.-.. .|. +....+.
T Consensus 158 ~Gd~l~~eLqkr~~~v~~l--------~~q~~k~~~~qv~~in~qlE-----rLRL~krrlQl~g----~Ld~~~q~~~~ 220 (289)
T COG4985 158 DGDPLERELQKRLLEVETL--------RDQVDKMVEQQVRVINSQLE-----RLRLEKRRLQLNG----QLDDEFQQHYV 220 (289)
T ss_pred cCcHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhcc----cccHHHHHHHH
Confidence 4788888888877776654 33344445556666655555 3333322221111 111 2223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 196 VEAQVWQAKARAQEATAASLQAQLQQ 221 (318)
Q Consensus 196 ~E~qaWQ~~A~~nEa~A~~Lr~~Lqq 221 (318)
+|--.-|++-+.-+...++|+++++.
T Consensus 221 ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 221 AEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444444444444445556655554
No 85
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.68 E-value=4.2 Score=39.62 Aligned_cols=54 Identities=26% Similarity=0.562 Sum_probs=36.8
Q ss_pred CCCcCcCCCcccccccccccccc----------eeEEeCCCCcccccchHh------hCCCCCCCccccCc
Q 021006 257 DPDRVVSVPVSGPACKGCRKRVA----------SVVLLPCRHLCVCTECDR------VVQACPLCFNVRDS 311 (318)
Q Consensus 257 d~~r~~~~~~~~~~C~vC~~~~~----------~vlLlPC~HlclC~~C~~------~l~~CPvCr~~i~~ 311 (318)
.++.++....+...|.+|..+-- ...-|.|+|. +=..|-. +.++||.|...++.
T Consensus 213 s~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 213 SPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 45556655667789999986422 2345799997 5566632 35799999987654
No 86
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.73 E-value=1.5e+02 Score=28.63 Aligned_cols=81 Identities=26% Similarity=0.320 Sum_probs=39.1
Q ss_pred hhhHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 126 KRQRDELDQF---LQAQGEQLRRALAEKRQRHYRALLGAAEE----SIARLLRE---KEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 126 ~~q~~EiD~~---i~~q~ErlR~~l~E~r~r~~r~ll~avE~----~~~~rLRe---KeeEle~a~rrn~ELEErlrql~ 195 (318)
+.|.+|+|.+ ++...+.|-..+.++.+.-..+++..+-. ++..++++ -..||..-+.-+.+|++.+.+|.
T Consensus 134 ~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~ 213 (258)
T PF15397_consen 134 DSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLR 213 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666644 44444444444444443333333222222 22222211 23355555666667777777777
Q ss_pred HHHHHHHHHHH
Q 021006 196 VEAQVWQAKAR 206 (318)
Q Consensus 196 ~E~qaWQ~~A~ 206 (318)
+|.+..+..+.
T Consensus 214 ~eV~~L~~~~~ 224 (258)
T PF15397_consen 214 AEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHhhc
Confidence 76666555544
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.57 E-value=1.6e+02 Score=34.33 Aligned_cols=90 Identities=24% Similarity=0.288 Sum_probs=49.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 209 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nE 209 (318)
.++|.=+...+++++....+..+ ..++|+--=-..+..++.++++++.++.+.+.++++.++-+...++. +.-..
T Consensus 464 ~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~----~~~~~ 538 (1317)
T KOG0612|consen 464 EEMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN----AADSL 538 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 35566666666777666666554 22333222222334466666667666666666666666555333332 23334
Q ss_pred HHHHHHHHHHHHHHH
Q 021006 210 ATAASLQAQLQQAIM 224 (318)
Q Consensus 210 a~A~~Lr~~Lqqal~ 224 (318)
..++.|+.+|+.+..
T Consensus 539 ~kv~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAEL 553 (1317)
T ss_pred hhHHHHHHHHHHhhh
Confidence 556677777776543
No 88
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.72 E-value=1.6e+02 Score=31.51 Aligned_cols=64 Identities=30% Similarity=0.305 Sum_probs=44.6
Q ss_pred HhHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 138 AQGEQLRRALAEKRQRHYRA--LLGAAEESI---ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVW 201 (318)
Q Consensus 138 ~q~ErlR~~l~E~r~r~~r~--ll~avE~~~---~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaW 201 (318)
+...+|+-.+.+.|+++--+ .+..++..+ ..+|=++++|+.-++++++.||+-++.|+.|+.--
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44556666666666655444 333343332 46778899999999999999999999999988543
No 89
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.58 E-value=34 Score=28.29 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
.++++...+++.+..+|.+|+.+-+.|..|...|+.-
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4677788888888888888888888888888888763
No 90
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=61.17 E-value=81 Score=24.99 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=31.0
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 121 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLRE 172 (318)
Q Consensus 121 l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLRe 172 (318)
....++.+...+..-|....++|+..|++.++ .||..++..-..++..
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~----~ll~~l~~~~~~~~~~ 76 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKRKK----QLLEDLEEQKENKLKV 76 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34556667777777788888888888888773 4555555443333333
No 91
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=61.06 E-value=1.8e+02 Score=29.78 Aligned_cols=40 Identities=30% Similarity=0.531 Sum_probs=31.4
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhHH----------HHHHHHHHHHHHHHH
Q 021006 117 LSDDLASPIKRQRDELDQFLQAQGE----------QLRRALAEKRQRHYR 156 (318)
Q Consensus 117 l~~~l~~~l~~q~~EiD~~i~~q~E----------rlR~~l~E~r~r~~r 156 (318)
-||||.++|++.+..+-+-|-++.+ +|-+.|+|-|+||-.
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999888888777776654 456678888999853
No 92
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=61.05 E-value=1.3e+02 Score=33.35 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 163 EESIARLLREKEAEVEKATRRNA 185 (318)
Q Consensus 163 E~~~~~rLReKeeEle~a~rrn~ 185 (318)
...+++|||+|+-|-+.+.+|+-
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~g 494 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKG 494 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhh
Confidence 35678999999988886655543
No 93
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=61.04 E-value=2.2e+02 Score=32.13 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHh----HHHHHHHHHHHHHH
Q 021006 127 RQRDELDQFLQAQ----GEQLRRALAEKRQR 153 (318)
Q Consensus 127 ~q~~EiD~~i~~q----~ErlR~~l~E~r~r 153 (318)
+|-.|..++.+++ .||-|++-+|+|+|
T Consensus 918 q~~~e~er~rk~qE~~E~ER~rrEaeek~rr 948 (1259)
T KOG0163|consen 918 QQIEELERLRKIQELAEAERKRREAEEKRRR 948 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3444555555543 56777777777764
No 94
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.87 E-value=1.1 Score=44.76 Aligned_cols=44 Identities=23% Similarity=0.481 Sum_probs=34.3
Q ss_pred cccccccccccc-eeEEeCCCCcccccchHhhC-----CCCCCCccccCce
Q 021006 268 GPACKGCRKRVA-SVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDSS 312 (318)
Q Consensus 268 ~~~C~vC~~~~~-~vlLlPC~HlclC~~C~~~l-----~~CPvCr~~i~~~ 312 (318)
...|.+|.+--. .+...-|.|. +|..|.+.. ..||.||....+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 468999998543 4566689999 899997762 5999999876653
No 95
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=60.45 E-value=72 Score=27.46 Aligned_cols=55 Identities=33% Similarity=0.366 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 021006 127 RQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESI----ARLLREKEAEVEKATRRNAELE 188 (318)
Q Consensus 127 ~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~----~~rLReKeeEle~a~rrn~ELE 188 (318)
+...++|.. .+++.++..+.+.|. -|.+++..+ ..+--..+..|..+.+|++|||
T Consensus 81 ~~i~~~~~~--~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 81 QRIAELEQE--CENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 333455555 456666666666654 344444443 3333445666667777777765
No 96
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.01 E-value=1.6e+02 Score=29.77 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHH
Q 021006 125 IKRQRDELDQFLQAQGEQLRRALAEK 150 (318)
Q Consensus 125 l~~q~~EiD~~i~~q~ErlR~~l~E~ 150 (318)
++.++.|.++ ++.|+++|...|-..
T Consensus 94 ~~e~q~e~~q-L~~qnqkL~nqL~~~ 118 (401)
T PF06785_consen 94 VEERQQESEQ-LQSQNQKLKNQLFHV 118 (401)
T ss_pred HHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 4444455554 356666665555433
No 97
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=59.92 E-value=5.5 Score=31.46 Aligned_cols=28 Identities=32% Similarity=0.794 Sum_probs=20.4
Q ss_pred cccccccccc--ceeEEeCCCCcccccchHh
Q 021006 269 PACKGCRKRV--ASVVLLPCRHLCVCTECDR 297 (318)
Q Consensus 269 ~~C~vC~~~~--~~vlLlPC~HlclC~~C~~ 297 (318)
..|.+|...- ..+++.||+|. +-..|..
T Consensus 79 ~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 4699998753 45777899987 5777753
No 98
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.57 E-value=60 Score=34.13 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~ 196 (318)
-|+++++|+++|++|+=+|..
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999888876
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=59.01 E-value=2.9e+02 Score=33.01 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 171 REKEAEVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 171 ReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
.+.+++++.+..+..++++.+..+..+...|+.
T Consensus 365 ee~eeeLeeleeeleeleeEleelEeeLeeLqe 397 (1486)
T PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVDELKS 397 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 100
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.95 E-value=1.5e+02 Score=27.43 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=8.0
Q ss_pred HhHHHHHHHHHHHHHH
Q 021006 138 AQGEQLRRALAEKRQR 153 (318)
Q Consensus 138 ~q~ErlR~~l~E~r~r 153 (318)
.+.+.++..|.+.+..
T Consensus 100 ~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 100 NQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3444555555555543
No 101
>PRK14140 heat shock protein GrpE; Provisional
Probab=58.81 E-value=43 Score=30.80 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 165 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQ 208 (318)
Q Consensus 165 ~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~n 208 (318)
+.+.-|-+.+.+|+.+..++.+|.+++.++.+|.+..++++...
T Consensus 34 ~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE 77 (191)
T PRK14140 34 SEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKE 77 (191)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666677777777788888888888887777766443
No 102
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.62 E-value=50 Score=37.74 Aligned_cols=47 Identities=28% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 021006 157 ALLGAAEESIARLLREKEAEVEKATRR-NAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 157 ~ll~avE~~~~~rLReKeeEle~a~rr-n~ELEErlrql~~E~qaWQ~ 203 (318)
+.|...|..-..+|+||-+|.++.-+. +..|||||+.+..-+++-|+
T Consensus 378 ~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~ 425 (1714)
T KOG0241|consen 378 EQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQA 425 (1714)
T ss_pred HHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445556666677888888888876443 67788888877665555444
No 103
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=58.20 E-value=90 Score=34.67 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=52.5
Q ss_pred hhhhhhhhhhhHHHHHHHHH-----------------HhHHHHHHHHHHHHHH--HHHHHHHHHHH--HH-HHHHHHHHH
Q 021006 118 SDDLASPIKRQRDELDQFLQ-----------------AQGEQLRRALAEKRQR--HYRALLGAAEE--SI-ARLLREKEA 175 (318)
Q Consensus 118 ~~~l~~~l~~q~~EiD~~i~-----------------~q~ErlR~~l~E~r~r--~~r~ll~avE~--~~-~~rLReKee 175 (318)
.++|.-.++.|++|=-+|.. +++.|++.+++|.-.. ++.-=|.++|. .+ .--||++|+
T Consensus 457 neellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDa 536 (861)
T PF15254_consen 457 NEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDA 536 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHH
Confidence 44555555556555544444 4677888888876532 33333444443 22 334999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~ 196 (318)
||+|++..+..|.-.+++|-.
T Consensus 537 Ei~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 537 EIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998888766
No 104
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.14 E-value=2.9e+02 Score=30.38 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021006 176 EVEKATRRNAELEARAAQLSV-----------EAQVWQAKARAQEATAASLQAQLQQAIMSG 226 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~-----------E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q~ 226 (318)
.++++..+-..|+.|++.+.. +-..|..+.+.-+.....|++.++++....
T Consensus 601 R~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 601 RYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777877776644 236688887777777788888888875543
No 105
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.83 E-value=39 Score=26.73 Aligned_cols=31 Identities=35% Similarity=0.541 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
|...+...+-.|+-+-.||..|-..||.+.+
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666777777889999999998754
No 106
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=57.48 E-value=2.4e+02 Score=29.29 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=46.8
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 124 PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEES------IARLLREKEAEVEKATRRNAELEARAAQLSVE 197 (318)
Q Consensus 124 ~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~------~~~rLReKeeEle~a~rrn~ELEErlrql~~E 197 (318)
+|++-+.|-|++|..++.---.+|+-+...|--.+-.-+|.. +-..-|+--+|++...|...-|-|...|-+.|
T Consensus 364 ELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLE 443 (593)
T KOG4807|consen 364 ELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLE 443 (593)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777666666666666666655554444432 22223455567777777777777776666666
Q ss_pred HHHH
Q 021006 198 AQVW 201 (318)
Q Consensus 198 ~qaW 201 (318)
+.+.
T Consensus 444 nahL 447 (593)
T KOG4807|consen 444 NAHL 447 (593)
T ss_pred HHHH
Confidence 6554
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.28 E-value=1.8e+02 Score=27.77 Aligned_cols=69 Identities=26% Similarity=0.228 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 142 QLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 210 (318)
Q Consensus 142 rlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa 210 (318)
++-..|.+.|.|-.+.=...-...-.+.+++.+-|+..+.++...|++.+..+..+-..-.+....-..
T Consensus 63 ~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 63 QLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333322222223345566677777777777777777777777666665555444433
No 108
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=57.04 E-value=87 Score=28.52 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 134 QFLQAQGEQLRRAL-------AEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 134 ~~i~~q~ErlR~~l-------~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
+|+..=.+|||..+ ..+.++........+...|-.-.++.++||.++.++...||+-. ..++
T Consensus 79 Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~-----------~~~k 147 (171)
T PF04799_consen 79 QFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQ-----------SKSK 147 (171)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 45555566666554 34555666666677777777778888888888888877777532 2333
Q ss_pred HHHHHHHHHHHHHHHH
Q 021006 207 AQEATAASLQAQLQQA 222 (318)
Q Consensus 207 ~nEa~A~~Lr~~Lqqa 222 (318)
.-...|+-|..+|+.-
T Consensus 148 ~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 148 TLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344556666666653
No 109
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=57.00 E-value=8.1 Score=27.68 Aligned_cols=36 Identities=28% Similarity=0.721 Sum_probs=22.9
Q ss_pred ccccccc--ccceeEEeCCC-----CcccccchHhh------CCCCCCCc
Q 021006 270 ACKGCRK--RVASVVLLPCR-----HLCVCTECDRV------VQACPLCF 306 (318)
Q Consensus 270 ~C~vC~~--~~~~vlLlPC~-----HlclC~~C~~~------l~~CPvCr 306 (318)
.|.||++ .+.+.++.||. |+ +=..|... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 55677888995 22 12345322 24899985
No 110
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=56.88 E-value=1.8e+02 Score=34.21 Aligned_cols=46 Identities=33% Similarity=0.289 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 215 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~L 215 (318)
+...|.-+..+..+..+||-+|..|+.+..---..|++.+.+|.+.
T Consensus 1607 t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa 1652 (1758)
T KOG0994|consen 1607 TAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSA 1652 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444555666777777777777776665555666666555443
No 111
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=56.57 E-value=4.1 Score=29.82 Aligned_cols=43 Identities=21% Similarity=0.636 Sum_probs=23.6
Q ss_pred ccccccccccceeEEeCCCCcccccchHhhC----CCCCCCccccCceE
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSV 313 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~~i~~~v 313 (318)
-.|+.|+-.....+ -|.--.+|-.|-..| +.||+|..++...|
T Consensus 3 ~nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 3 YNCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ----SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ccChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 36899988777644 576555999998775 58999998876544
No 112
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=56.32 E-value=79 Score=23.32 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 184 NAELEARAAQLSVEAQVWQAKARAQEATAASLQAQ 218 (318)
Q Consensus 184 n~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~ 218 (318)
..+||+++..|..|+..+......-+.....|..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666555555555555443
No 113
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.11 E-value=1.8e+02 Score=27.00 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 177 VEKATRRNAELEARAAQLSVE 197 (318)
Q Consensus 177 le~a~rrn~ELEErlrql~~E 197 (318)
+.++...|.+|.+.+..+..|
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 114
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=54.81 E-value=93 Score=24.41 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~ 195 (318)
.|.+++.++..||.|+..|.
T Consensus 58 ~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555556666666666553
No 115
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=54.73 E-value=2.7e+02 Score=29.05 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 183 RNAELEARAAQLSVEAQVWQAKARAQEA 210 (318)
Q Consensus 183 rn~ELEErlrql~~E~qaWQ~~A~~nEa 210 (318)
++.+|..+|+.|..-...|-.....+..
T Consensus 379 ~l~~~~~~~~~le~~~~~~~~~~~~~~~ 406 (582)
T PF09731_consen 379 KLAELNSRLKALEEALDARSEAEDENRR 406 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556777777777777666655554
No 116
>PRK11637 AmiB activator; Provisional
Probab=54.56 E-value=2.4e+02 Score=28.39 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 223 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal 223 (318)
.|...+.+|+.+.+++.+++..+..+..+-..-+......+.....++..|...+
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555433
No 117
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.46 E-value=1.1e+02 Score=32.15 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=21.8
Q ss_pred hhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021006 120 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQR 153 (318)
Q Consensus 120 ~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r 153 (318)
.|.++++.-+.|++.+++ ++++|+..-+..|+|
T Consensus 63 Tlva~~k~~r~~~~~l~~-~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLIS-ENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 356677888888887654 566666666655543
No 118
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=54.18 E-value=4.3 Score=35.60 Aligned_cols=44 Identities=30% Similarity=0.711 Sum_probs=32.8
Q ss_pred ccccccccccceeEEe-C---CCCcccccchHhhC-------CCCCCCccccCceE
Q 021006 269 PACKGCRKRVASVVLL-P---CRHLCVCTECDRVV-------QACPLCFNVRDSSV 313 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLl-P---C~HlclC~~C~~~l-------~~CPvCr~~i~~~v 313 (318)
-.|-+|.+...+--|| | || +-+|..|-..+ ..||+|+....++-
T Consensus 81 YeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4788898877765554 3 55 66999997664 59999999877653
No 119
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.04 E-value=2.1e+02 Score=27.46 Aligned_cols=97 Identities=26% Similarity=0.301 Sum_probs=53.1
Q ss_pred cchhcchhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 112 SLLSFLSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 191 (318)
Q Consensus 112 ~~~s~l~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErl 191 (318)
..++ ++|-..+.+..++.-||.|+..--.++-..+.+--++-.+.. --+..+..-|++-+.|+-+-+...-+=+++.
T Consensus 12 t~l~-l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~--~e~e~l~~~l~etene~~~~neL~~ek~~~q 88 (246)
T KOG4657|consen 12 TMLS-LGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQ--VELENLKADLRETENELVKVNELKTEKEARQ 88 (246)
T ss_pred HHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 677788999999999999998763333333333222111111 1122334456777777766666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021006 192 AQLSVEAQVWQAKARAQEAT 211 (318)
Q Consensus 192 rql~~E~qaWQ~~A~~nEa~ 211 (318)
-.+.+|.-+.|....-.+.+
T Consensus 89 ~~ieqeik~~q~elEvl~~n 108 (246)
T KOG4657|consen 89 MGIEQEIKATQSELEVLRRN 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544333333
No 120
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.58 E-value=1.6e+02 Score=31.99 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=6.8
Q ss_pred cccccccchhH
Q 021006 68 TGLRLSFGDQQ 78 (318)
Q Consensus 68 tglrLs~~~~~ 78 (318)
-++.++++|+.
T Consensus 332 r~~~~~~~ddH 342 (652)
T COG2433 332 RTLKISVSDDH 342 (652)
T ss_pred hhcCCCCCCch
Confidence 34567777774
No 121
>PHA03415 putative internal virion protein; Provisional
Probab=53.31 E-value=44 Score=37.27 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=61.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 021006 118 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEK-----------RQRHYRALLGAAEESIARLLREKEAEVEKATRRN-- 184 (318)
Q Consensus 118 ~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~-----------r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn-- 184 (318)
.|+-++.+..-+.|.|-+++.-.|-|-++|.|+ |.+.++..-.++|+.+.+-|--.++|--+..+..
T Consensus 298 n~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~d 377 (1019)
T PHA03415 298 NDNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMAD 377 (1019)
T ss_pred CccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCC
Confidence 566678888999999999999999999999996 4556778888889888888755555554433332
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021006 185 AELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 185 ~ELEErlrql~~E~qaWQ~~ 204 (318)
-.+..-+++|..|++.|...
T Consensus 378 p~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 378 PNLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 22334455666666665554
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=53.20 E-value=90 Score=23.04 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 184 NAELEARAAQLSVEAQVWQAKARAQEATAASL 215 (318)
Q Consensus 184 n~ELEErlrql~~E~qaWQ~~A~~nEa~A~~L 215 (318)
..+||.++..|..|+..++.....-+.....|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544443333333333
No 123
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=51.83 E-value=1.4e+02 Score=24.97 Aligned_cols=61 Identities=31% Similarity=0.393 Sum_probs=33.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
||.|+.-|+.++-|-..... .|-..+... -..||-.+.|++...-+|..|+-|+..|-.|-
T Consensus 10 LraQ~~vLKKaVieEQ~k~~-~L~e~Lk~k-e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNA-ELKEQLKEK-EQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777665543322 111111111 12355566677777777777777766555443
No 124
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.76 E-value=2.4e+02 Score=29.19 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
-|++-..++.+..+.+.+++.++..+..+-
T Consensus 81 ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 81 QLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 366667777777777777777777766554
No 125
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=51.51 E-value=2e+02 Score=26.46 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=54.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 118 SDDLASPIKRQRDELDQFLQAQ------------------------GEQLRRALAEKRQRHYRALLGAAEESIARLLREK 173 (318)
Q Consensus 118 ~~~l~~~l~~q~~EiD~~i~~q------------------------~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReK 173 (318)
-+-|..+|+++-.|.+.+|... .+.|+..|...+ -...-+..+-..+..-|.||
T Consensus 65 Kq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~--~nl~~a~~~a~~AQ~el~eK 142 (188)
T PF05335_consen 65 KQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQ--ANLANAEQVAEGAQQELAEK 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888877755 333333333333 11222223333455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 210 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa 210 (318)
..-|+.+++|...|...|...+.+.+.-+.-|.-...
T Consensus 143 ~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~ 179 (188)
T PF05335_consen 143 TQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAAC 179 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777666655544433
No 126
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.43 E-value=60 Score=26.85 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVE 197 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E 197 (318)
.+.+.+.|++++..+|.+|++.+..|...
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34456667777777777777777777653
No 127
>PRK09039 hypothetical protein; Validated
Probab=50.92 E-value=2.6e+02 Score=27.70 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 225 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q 225 (318)
+|..++..+..|++++..+..+-.+=...-++.+.....|...|+.++++
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777777777778888888888888888765
No 128
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.31 E-value=1.3e+02 Score=29.59 Aligned_cols=105 Identities=23% Similarity=0.285 Sum_probs=44.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 118 SDDLASPIKRQRDELDQFLQAQGEQLR------RALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 191 (318)
Q Consensus 118 ~~~l~~~l~~q~~EiD~~i~~q~ErlR------~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErl 191 (318)
-+.+-.+++.-..|.|.|...-. ++. ..+.+. ..-..-+..-|......|++.|.|-+.+.+...+|++..
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~-~l~~~~~~~~~~~~~--~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLK-KLEEESDSEEDIEEL--EEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp --------------------------------HH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677776655321 111 111111 112223455666777788888888888888888888877
Q ss_pred HHHHH-HHHHHHHHHHHH------HHHHHHHHHHHHHHHHc
Q 021006 192 AQLSV-EAQVWQAKARAQ------EATAASLQAQLQQAIMS 225 (318)
Q Consensus 192 rql~~-E~qaWQ~~A~~n------Ea~A~~Lr~~Lqqal~q 225 (318)
+.+.. |...|+....-. +..-.+|.++++.+..+
T Consensus 88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 88 EELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77754 556676644222 22234455555555444
No 129
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=50.08 E-value=4.4 Score=42.84 Aligned_cols=41 Identities=22% Similarity=0.547 Sum_probs=33.8
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh---------CCCCCCCcccc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV---------VQACPLCFNVR 309 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~---------l~~CPvCr~~i 309 (318)
...|.+|.+...+.+.-.|-|. +|.-|... --+||+|....
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 4689999999999999999998 89999633 13999997654
No 130
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=49.96 E-value=94 Score=28.40 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVW 201 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaW 201 (318)
++.|++-|+.+.++..+|++++.+|..|-++-
T Consensus 141 ~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 141 LKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666777777777777665543
No 131
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=49.15 E-value=1.7e+02 Score=26.16 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 155 YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 155 ~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
|+.+..+.. +.||+|..++..++++-+++++++..
T Consensus 92 yk~~aKsyA-------kkKD~Ea~~L~~KLkeEq~kv~~ME~ 126 (152)
T PF11500_consen 92 YKQLAKSYA-------KKKDAEAMRLAEKLKEEQEKVAEMER 126 (152)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444 46999999999988888888776654
No 132
>smart00338 BRLZ basic region leucin zipper.
Probab=49.09 E-value=1.1e+02 Score=22.65 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
..+.+.+.+++.+...|.+|...+..|..|...+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888888999999999999999998887654
No 133
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=49.05 E-value=2.2e+02 Score=30.32 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 138 AQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQA 217 (318)
Q Consensus 138 ~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~ 217 (318)
.+.+||++.+++-.+.+.|-- --|++-+++|.++..+...|+-.++...--.++--+.-+..|+--+.|..
T Consensus 28 ~ef~rl~k~fed~~ek~~r~~---------ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~ 98 (604)
T KOG3564|consen 28 DEFIRLRKDFEDFEEKWKRTD---------AELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLET 98 (604)
T ss_pred HHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344567777777766555432 12556777888888888888877766655555544444445555555555
Q ss_pred HHHH
Q 021006 218 QLQQ 221 (318)
Q Consensus 218 ~Lqq 221 (318)
..++
T Consensus 99 ~i~~ 102 (604)
T KOG3564|consen 99 QIQL 102 (604)
T ss_pred HHHH
Confidence 5444
No 134
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.77 E-value=3.7e+02 Score=28.80 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 172 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 210 (318)
Q Consensus 172 eKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa 210 (318)
....|++.+...+.++..|+++|..+...+.....+++.
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~ 241 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEK 241 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666655555544443
No 135
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=48.41 E-value=37 Score=27.31 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~ 196 (318)
-+.||++++.|+.+|.+|++.|..
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455999999999999999998876
No 136
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.30 E-value=2e+02 Score=25.90 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHh
Q 021006 123 SPIKRQRDELDQFLQAQ 139 (318)
Q Consensus 123 ~~l~~q~~EiD~~i~~q 139 (318)
..+-..+.|+..+-+..
T Consensus 74 ~~~~~l~~ELael~r~~ 90 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSK 90 (194)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33444444554444433
No 137
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.15 E-value=1.5e+02 Score=28.69 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=39.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELE 188 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELE 188 (318)
.+|+.-|+.-+..+...++..+ +...-|.+=|...-.++..|..|||+..+|...|.
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~--~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQ--QQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777665 33444455566667788888889999988876653
No 138
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=45.80 E-value=84 Score=30.20 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
-++|+++.||.++-+....||.+|+.|.-
T Consensus 71 ~~IRdLNDeINkL~rEK~~WE~rI~~LGG 99 (255)
T PF06246_consen 71 FQIRDLNDEINKLIREKRHWERRIKELGG 99 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36999999999999999999999998764
No 139
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=45.79 E-value=1.4e+02 Score=22.93 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=46.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 021006 137 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ------VWQAKARAQEA 210 (318)
Q Consensus 137 ~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~q------aWQ~~A~~nEa 210 (318)
+...+++...|.+.++.|.+.|...... ..-=++-+.=...+++....+..+|+.+..... .+-...+-...
T Consensus 13 ~~~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~n 90 (103)
T PF00804_consen 13 REDIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKN 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHH
Confidence 3445567777777777777766665532 112223333444556667777778888877754 23334444444
Q ss_pred HHHHHHHHHHHH
Q 021006 211 TAASLQAQLQQA 222 (318)
Q Consensus 211 ~A~~Lr~~Lqqa 222 (318)
...+|...+..+
T Consensus 91 q~~~L~~kf~~~ 102 (103)
T PF00804_consen 91 QVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 140
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=45.42 E-value=4.6e+02 Score=29.01 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHH------HHHhHHHHHHH
Q 021006 124 PIKRQRDELDQF------LQAQGEQLRRA 146 (318)
Q Consensus 124 ~l~~q~~EiD~~------i~~q~ErlR~~ 146 (318)
.|..|-.|+|++ -+.+.|.||.+
T Consensus 95 rLe~qa~Ele~l~~ae~agraEae~Lraa 123 (739)
T PF07111_consen 95 RLEAQAEELEALARAEKAGRAEAEELRAA 123 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 355667788877 55566666643
No 141
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=45.36 E-value=8.5 Score=25.65 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=12.6
Q ss_pred CCCCCCCccccCceEE
Q 021006 299 VQACPLCFNVRDSSVE 314 (318)
Q Consensus 299 l~~CPvCr~~i~~~v~ 314 (318)
...||+|..+...+.+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 4699999998877654
No 142
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.34 E-value=2.9e+02 Score=30.51 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHH
Q 021006 126 KRQRDELDQFLQ 137 (318)
Q Consensus 126 ~~q~~EiD~~i~ 137 (318)
.....+++.+|.
T Consensus 507 ~~~~~~~~~li~ 518 (771)
T TIGR01069 507 GEFKEEINVLIE 518 (771)
T ss_pred HhhHHHHHHHHH
Confidence 344456666654
No 143
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=45.16 E-value=4.3e+02 Score=28.58 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=53.2
Q ss_pred hhhhhhHHHH-HHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 123 SPIKRQRDEL-DQFLQAQGEQLR----RALAEKRQRHYRALLGAAEES---IARLLREKEAEVEKATRRNAELEARAAQL 194 (318)
Q Consensus 123 ~~l~~q~~Ei-D~~i~~q~ErlR----~~l~E~r~r~~r~ll~avE~~---~~~rLReKeeEle~a~rrn~ELEErlrql 194 (318)
-+|+.|-.|+ |.|+++.+++|= .-.+...++-...=|.-++.. +..+|..|+.|+..+...+.++-..|.|.
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy 242 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY 242 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888 789999999853 334444444444444444432 23577888888888877776665555554
Q ss_pred HHHHHHHHHHHHHHHH
Q 021006 195 SVEAQVWQAKARAQEA 210 (318)
Q Consensus 195 ~~E~qaWQ~~A~~nEa 210 (318)
.+ +|+.++.++|+
T Consensus 243 ~a---~~q~l~~e~e~ 255 (617)
T PF15070_consen 243 VA---AYQQLASEKEE 255 (617)
T ss_pred HH---HHHHHHHHHHH
Confidence 33 33444444444
No 144
>PRK14139 heat shock protein GrpE; Provisional
Probab=44.78 E-value=71 Score=29.27 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
+.+|+.+.+++.+|.+++.++.+|.+..++++
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~rKR~ 69 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENVRRRA 69 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555544
No 145
>PRK02224 chromosome segregation protein; Provisional
Probab=44.36 E-value=4.6e+02 Score=28.68 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 215 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~L 215 (318)
+-.+.+.|+....+..+|++.+..+..+.+.|...|.+.++.+..+
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 570 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEA 570 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3344567777888888999999999999999998777766654443
No 146
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.23 E-value=80 Score=33.05 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 175 AEVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 175 eEle~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
.|++.+.+...++|++|+.+..|....+.
T Consensus 90 qElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 90 RELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 35555556666666666655555554433
No 147
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=43.74 E-value=2.2e+02 Score=24.88 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=51.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHH--
Q 021006 118 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRH--YRALLGAAEESIARLLRE-KEA-EVEKATRRNAELEARA-- 191 (318)
Q Consensus 118 ~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~--~r~ll~avE~~~~~rLRe-Kee-Ele~a~rrn~ELEErl-- 191 (318)
|=.|+..|.++..++|.= .+.|+..|.+.-+.+ ...++..+-.....+.+. ++. -+. ..-..+|+.++
T Consensus 20 gC~i~~~L~k~~~~v~~~----i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~--~~~s~~l~~~~~~ 93 (146)
T PF08702_consen 20 GCGIQDFLDKYERDVDKD----IQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIY--NQYSKSLRKMIIY 93 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCH
T ss_pred cchHHHHHHHHccchHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHH--HHHHHHHHHHHHH
Confidence 335666777776676654 355666676666555 344556666555555554 222 221 11233444433
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 192 ------AQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 224 (318)
Q Consensus 192 ------rql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~ 224 (318)
-.-..--+..|..-..+.....-|+....+.++
T Consensus 94 ~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 94 ILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222345555556666666555544444433
No 148
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=43.05 E-value=9.6 Score=27.71 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=11.6
Q ss_pred CCCCcccccchHhhC-----CCCCCCcccc
Q 021006 285 PCRHLCVCTECDRVV-----QACPLCFNVR 309 (318)
Q Consensus 285 PC~HlclC~~C~~~l-----~~CPvCr~~i 309 (318)
||++. +|..|...+ ..||.||.+-
T Consensus 19 ~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 56666 899996553 3799999863
No 149
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=42.95 E-value=1.3e+02 Score=29.73 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
|++-..+||-+|-+++..+.-|-+-.+.
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666665555555544443
No 150
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=42.89 E-value=15 Score=36.99 Aligned_cols=46 Identities=26% Similarity=0.514 Sum_probs=35.6
Q ss_pred cccccccccccceeEE-eCCCCcccccchHhhC----CCCCCCccccCceEE
Q 021006 268 GPACKGCRKRVASVVL-LPCRHLCVCTECDRVV----QACPLCFNVRDSSVE 314 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlL-lPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~ 314 (318)
+..|.+|..--.+-+. ..|+|. +|..|.... ..||+|+..+...-.
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence 4689999887777666 599999 899996552 589999887765443
No 151
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.53 E-value=1.6e+02 Score=22.90 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 182 RRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 182 rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
..|.+|.+...++..|-.+|+..
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777778765
No 152
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=42.50 E-value=1.5e+02 Score=22.59 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=26.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 131 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAE 163 (318)
Q Consensus 131 EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE 163 (318)
.+..-|+...+.....|+...=.+|+.||.+.+
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~ 58 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKLVYENYRDFIEASD 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444556667778888888888899999999887
No 153
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.27 E-value=1.6e+02 Score=28.07 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=14.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKRQR 153 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r~r 153 (318)
.++.. +..+.+.|+..+++.+.+
T Consensus 67 ~~~~~-l~~el~~l~~e~~elkd~ 89 (238)
T PRK14143 67 ARLAQ-LEQELESLKQELEELNSQ 89 (238)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45554 445667777777766544
No 154
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=42.16 E-value=1e+02 Score=35.44 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVE-------KATRRNAELEARAAQLSVEAQV 200 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle-------~a~rrn~ELEErlrql~~E~qa 200 (318)
+..+.+.|+..|+++-+ + -.....++++++++++ ....++.+|++.+.++.++...
T Consensus 147 ~~~~~~~l~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAR----E-----KAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred hHHHHHHHHHHHHHhhh----h-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666632211 1 1112233444555555 4555666777777766665544
No 155
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.39 E-value=4.4e+02 Score=29.18 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHH
Q 021006 125 IKRQRDELDQFLQ 137 (318)
Q Consensus 125 l~~q~~EiD~~i~ 137 (318)
+.....+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 3455567777765
No 156
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.12 E-value=3.2e+02 Score=25.87 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=33.3
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 117 LSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 117 l~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
|.|-|+++|++= ++|..++.+|...|...+.+..... +.+....-.-|++.-..|+.+...+..|+-.+..+..
T Consensus 9 LNdRla~YIekV-----r~LE~~N~~Le~~i~~~~~~~~~~~-~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 9 LNDRLASYIEKV-----RFLEQENKRLESEIEELREKKGEEV-SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHhcccccC-cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 566666666542 3455555555555555554431111 2222222233333333444444444444444444444
Q ss_pred HHHHHHH
Q 021006 197 EAQVWQA 203 (318)
Q Consensus 197 E~qaWQ~ 203 (318)
+...++.
T Consensus 83 e~~~~r~ 89 (312)
T PF00038_consen 83 ELEDLRR 89 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 157
>PRK14155 heat shock protein GrpE; Provisional
Probab=40.82 E-value=96 Score=28.90 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
+|+.+.+++.+|.+++.++.+|.+..++++
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~ 50 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRA 50 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555444
No 158
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=40.70 E-value=3e+02 Score=25.54 Aligned_cols=77 Identities=29% Similarity=0.360 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 143 LRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 143 lR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
||+.--|..+.+...++..-| .|++....+|+.+...-.+--.+=+++..|.++....=....+-...|..++.++
T Consensus 105 irR~~LeAQka~~eR~ia~~~----~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESE----ARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555554444 3334444466666655555555666666666666555555555555555555444
Q ss_pred H
Q 021006 223 I 223 (318)
Q Consensus 223 l 223 (318)
-
T Consensus 181 q 181 (192)
T PF11180_consen 181 Q 181 (192)
T ss_pred H
Confidence 3
No 159
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.31 E-value=3.8e+02 Score=29.64 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.1
Q ss_pred HHHHHH
Q 021006 143 LRRALA 148 (318)
Q Consensus 143 lR~~l~ 148 (318)
|-..|+
T Consensus 521 li~~l~ 526 (782)
T PRK00409 521 LIASLE 526 (782)
T ss_pred HHHHHH
Confidence 333333
No 160
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.05 E-value=15 Score=36.16 Aligned_cols=42 Identities=14% Similarity=0.398 Sum_probs=26.5
Q ss_pred cccccccccccceeEEeCC----C-CcccccchHhh--C--CCCCCCcccc
Q 021006 268 GPACKGCRKRVASVVLLPC----R-HLCVCTECDRV--V--QACPLCFNVR 309 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC----~-HlclC~~C~~~--l--~~CPvCr~~i 309 (318)
...|.||+..+..-++..- | -+..|.-|... + ..||.|....
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC
Confidence 4589999988864333222 1 12368888644 2 3899998754
No 161
>PRK14157 heat shock protein GrpE; Provisional
Probab=39.98 E-value=1e+02 Score=29.26 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQRH 154 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~r~ 154 (318)
+..+.+.++..+.+.+.+.
T Consensus 82 ~~~~l~~le~e~~e~kd~l 100 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEAL 100 (227)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4456677777777765544
No 162
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.85 E-value=8.7 Score=25.25 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.7
Q ss_pred CCCCCCCccccCceEE
Q 021006 299 VQACPLCFNVRDSSVE 314 (318)
Q Consensus 299 l~~CPvCr~~i~~~v~ 314 (318)
-..||+|..++..++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 4599999998877664
No 163
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.72 E-value=91 Score=29.15 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATRRNAELEARA 191 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErl 191 (318)
++|.+-+.|||.+..+.+.|++++
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555543
No 164
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=39.57 E-value=1.7e+02 Score=22.26 Aligned_cols=40 Identities=8% Similarity=0.117 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAA 213 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~ 213 (318)
.++|.+...+..++++++..+..-..+.....+.+.....
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~ 44 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLE 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555554444444433333333333333
No 165
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=39.39 E-value=2.2e+02 Score=25.09 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSG 226 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q~ 226 (318)
++-++.+..-...++..+.-+..|...++.+++..+..+..|+..|..++...
T Consensus 39 ~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 39 EEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455566666666666777777888888889999999999999999988764
No 166
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=39.07 E-value=1.4e+02 Score=29.49 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=37.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 131 ELDQFLQAQGEQLRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEAR 190 (318)
Q Consensus 131 EiD~~i~~q~ErlR~~l~E~r~r~--~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEEr 190 (318)
.+.+.|-.++|.|-+..+-+++.- ...|.+ -++|+-||.++|.++++|.-+|.|.
T Consensus 9 ~~~~~i~k~nee~~~~~~~~~k~~e~~qkl~s-----r~~~~~ekke~i~r~n~k~~d~v~~ 65 (359)
T KOG4398|consen 9 QLKQTICKGNEEMEKNSEGLLKTKEKNQKLYS-----RAQRHQEKKEKIQRHNRKLGDLVEK 65 (359)
T ss_pred HHHHHHhcCcHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcchHHHH
Confidence 445666677777777776665432 223333 5788999999999999987776654
No 167
>KOG3068 consensus mRNA splicing factor [RNA processing and modification]
Probab=38.61 E-value=1e+02 Score=29.75 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 154 HYRALLGAAEESIAR---------LLREKEAEVEKATRRNAELEARAAQL 194 (318)
Q Consensus 154 ~~r~ll~avE~~~~~---------rLReKeeEle~a~rrn~ELEErlrql 194 (318)
|-++++.-|..++++ |||+.+.||.++.|....||-+++.|
T Consensus 46 wRrqIvreIskKva~Iqn~gLgE~rirDLNDEiNkLlrEk~~WE~rI~el 95 (268)
T KOG3068|consen 46 WRRQIVREISKKVARIQNAGLGEFRIRDLNDEINKLLREKHHWEVRIREL 95 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666665 69999999999999999999999988
No 168
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=38.59 E-value=1.7e+02 Score=21.94 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=33.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRN 184 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn 184 (318)
.-||.||.. ||.-|+++. ..++..+-..-.+.|..+-.+||..+|+.
T Consensus 7 ~~~d~yI~~----Lk~kLd~Kk----~Eil~~ln~EY~kiLk~r~~~lEevKrk~ 53 (56)
T PF08112_consen 7 STIDKYISI----LKSKLDEKK----SEILSNLNMEYEKILKQRRKELEEVKRKA 53 (56)
T ss_pred hhHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888765 777787776 46667776666777777777887777653
No 169
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.50 E-value=4.5e+02 Score=26.88 Aligned_cols=47 Identities=9% Similarity=0.088 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 158 LLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 158 ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
.+..++......+.+.++|++.+.+....|+..+..+..+-..+...
T Consensus 203 ~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 203 NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444455566777777777777777777777777777666543
No 170
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=38.18 E-value=2.7e+02 Score=24.19 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 161 AAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 161 avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
.+| ..-+|+.-.|+||+.+.++..+..++++++...+...-+..+.-|.....+...++.+
T Consensus 74 ~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 74 NAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred hHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344 6778899999999999999999999998888877666555555555555444444443
No 171
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=38.04 E-value=13 Score=33.64 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=21.7
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhCCCCCCCccccCceEE
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVE 314 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l~~CPvCr~~i~~~v~ 314 (318)
...|.+| ||. |.. ..-..||+|..++..+..
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~P~~CPiCga~k~~F~~ 164 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EAPEVCPICGAPKEKFEK 164 (166)
T ss_pred EEEcCCC------------CCc--ccC--CCCCcCCCCCChHHHhhc
Confidence 3577775 665 455 445799999998876653
No 172
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.92 E-value=97 Score=23.70 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
..|....+++++..++.++++.+.+|..|...|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 47788889999999999999999999999988865
No 173
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.61 E-value=3.3e+02 Score=25.10 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQ------RHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 209 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~------r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nE 209 (318)
++...+.|+..+.+.-. ......+..--.....|+.....+|++.++++.+..+++..+..+.+.=+.......
T Consensus 32 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~ 111 (302)
T PF10186_consen 32 LKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQ 111 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 021006 210 ATAASLQAQLQQAIM 224 (318)
Q Consensus 210 a~A~~Lr~~Lqqal~ 224 (318)
.........+.....
T Consensus 112 ~~~~~~~~~~~~~~~ 126 (302)
T PF10186_consen 112 DLVESRQEQLEELQN 126 (302)
T ss_pred HHHHHHHHHHHHHHH
No 174
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.56 E-value=5.6e+02 Score=27.72 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVE 197 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E 197 (318)
-||+-+|||.-.|.++.|-|.+.+|..+
T Consensus 326 erE~~EeIe~~~ke~kdLkEkv~~lq~~ 353 (654)
T KOG4809|consen 326 ERERLEEIESFRKENKDLKEKVNALQAE 353 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999988774
No 175
>PRK14158 heat shock protein GrpE; Provisional
Probab=37.56 E-value=1.6e+02 Score=27.25 Aligned_cols=11 Identities=9% Similarity=-0.145 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 021006 140 GEQLRRALAEK 150 (318)
Q Consensus 140 ~ErlR~~l~E~ 150 (318)
.+.+...+++.
T Consensus 49 l~~le~e~~el 59 (194)
T PRK14158 49 LAAKEAEAAAN 59 (194)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 176
>PRK14159 heat shock protein GrpE; Provisional
Probab=37.45 E-value=1.1e+02 Score=27.77 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021006 184 NAELEARAAQLSVEAQVW 201 (318)
Q Consensus 184 n~ELEErlrql~~E~qaW 201 (318)
..+|.+++.++.+|.+..
T Consensus 39 ~~elkd~~lR~~AdfeN~ 56 (176)
T PRK14159 39 YDELKDKYMRANAEFENI 56 (176)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 177
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=37.43 E-value=2.3e+02 Score=24.62 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=42.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 021006 118 SDDLASPIKRQRDELDQFLQAQ------GEQLRRALAEKRQRHYRALLGAAEESIA---RLLREKEAEVEKATRRNAELE 188 (318)
Q Consensus 118 ~~~l~~~l~~q~~EiD~~i~~q------~ErlR~~l~E~r~r~~r~ll~avE~~~~---~rLReKeeEle~a~rrn~ELE 188 (318)
+..+.++|++-.+==+.|.+.. ...|-..+.|.+ +++..-|..+- .-++.||.||..++++..++.
T Consensus 47 D~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~q-----sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 47 DEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQ-----SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678887776666666644 334555555553 44444443332 558899999988888766665
Q ss_pred HH
Q 021006 189 AR 190 (318)
Q Consensus 189 Er 190 (318)
-.
T Consensus 122 ~~ 123 (131)
T PF04859_consen 122 RA 123 (131)
T ss_pred HH
Confidence 43
No 178
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=37.41 E-value=2.8e+02 Score=24.68 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=42.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATR 182 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~r 182 (318)
.||+.+=..-.+-|+..|.+.-+.+-......+|....++..+|+.-|+++.+
T Consensus 94 ~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~ 146 (154)
T PF14738_consen 94 EEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEK 146 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777778888888888888888888888888888888888877754
No 179
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=36.98 E-value=2.5e+02 Score=28.65 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 151 RQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 151 r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
+-+-...-+...|.....++++++.+|++..++..++|.++.++.
T Consensus 325 ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~ 369 (373)
T COG5019 325 KIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLK 369 (373)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444456677777777788888888888777777777766554
No 180
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=36.51 E-value=2.3e+02 Score=22.83 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 171 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAA 213 (318)
Q Consensus 171 ReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~ 213 (318)
.+.++||.++......|.+.+.+..+.+..|.....+-.....
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889888999999999999999999877554444333
No 181
>PLN02189 cellulose synthase
Probab=36.42 E-value=25 Score=39.95 Aligned_cols=45 Identities=27% Similarity=0.679 Sum_probs=32.6
Q ss_pred cccccccccccc----cceeEEeCCC--CcccccchHhh-----CCCCCCCccccC
Q 021006 266 VSGPACKGCRKR----VASVVLLPCR--HLCVCTECDRV-----VQACPLCFNVRD 310 (318)
Q Consensus 266 ~~~~~C~vC~~~----~~~vlLlPC~--HlclC~~C~~~-----l~~CPvCr~~i~ 310 (318)
.++..|.+|.+. ...-+|+.|. .+.+|..|..- -+.||-|++...
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345689999987 4445778885 23389999644 369999998655
No 182
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=36.33 E-value=2.7e+02 Score=31.55 Aligned_cols=54 Identities=28% Similarity=0.244 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSG 226 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q~ 226 (318)
++.++++++++...++-++..+.+|.+.-|..+++|-...--|+.++.|.++..
T Consensus 349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r 402 (980)
T KOG0980|consen 349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASR 402 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666777777777777777777777777777666667777666665543
No 183
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.10 E-value=1.5e+02 Score=21.99 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEAQVW 201 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~qaW 201 (318)
++..++.|+....+++.++......|..|.+.+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666666
No 184
>PRK14127 cell division protein GpsB; Provisional
Probab=35.77 E-value=1.6e+02 Score=24.88 Aligned_cols=10 Identities=50% Similarity=0.880 Sum_probs=7.1
Q ss_pred HHHHHHHHHh
Q 021006 130 DELDQFLQAQ 139 (318)
Q Consensus 130 ~EiD~~i~~q 139 (318)
+|+|.||..=
T Consensus 26 ~EVD~FLd~V 35 (109)
T PRK14127 26 DEVDKFLDDV 35 (109)
T ss_pred HHHHHHHHHH
Confidence 6888887644
No 185
>PRK14151 heat shock protein GrpE; Provisional
Probab=35.71 E-value=1.5e+02 Score=26.82 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 175 AEVEKATRRNAELEARAAQLSVEAQVWQAKARA 207 (318)
Q Consensus 175 eEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~ 207 (318)
++|+.+.+++.+|.+++.++.+|.+..++++..
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~k 59 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQ 59 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666667777777777666665533
No 186
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=35.64 E-value=3.9e+02 Score=25.98 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 220 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lq 220 (318)
|.+-.+++.-..++|+|+=+.|..||+..+..-+.-=+.-+.|+..|+
T Consensus 88 KKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 88 KKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444555556667788888888888888887764433333334444444
No 187
>PF14282 FlxA: FlxA-like protein
Probab=35.57 E-value=2.1e+02 Score=23.52 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021006 174 EAEVEKATRRNAELEARAAQLSV-EA---QVWQAKARAQEATAASLQAQLQQAIMSG 226 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~-E~---qaWQ~~A~~nEa~A~~Lr~~Lqqal~q~ 226 (318)
+..|+.+.+++..|.+.|+.|.. +. ..-+...+.-.+-+..|.++|.++..+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888887 22 3445555666666777777777765543
No 188
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=35.38 E-value=1.1e+02 Score=23.23 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 160 GAAEESIARLLREKEAEVEKATRRNAELE 188 (318)
Q Consensus 160 ~avE~~~~~rLReKeeEle~a~rrn~ELE 188 (318)
.-+...=+.-|+..-+||++..++|++|-
T Consensus 13 ~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 13 LFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33344445556677779999999998864
No 189
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.69 E-value=14 Score=33.19 Aligned_cols=25 Identities=24% Similarity=0.696 Sum_probs=20.1
Q ss_pred cccchHhh-CCCCCCCccccCceEEE
Q 021006 291 VCTECDRV-VQACPLCFNVRDSSVEV 315 (318)
Q Consensus 291 lC~~C~~~-l~~CPvCr~~i~~~v~V 315 (318)
+|..|... +..||-|..+|.+..+|
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 67888655 68999999999987654
No 190
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=34.63 E-value=3e+02 Score=23.73 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=36.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 119 DDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 119 ~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
.++.+.++.-..|+++|++.+..|-...- +.-.+ .+.+|+.....-.+.+|++..+.+..
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k---------~~ae~-----------a~~~L~~~~~~~~~i~e~~~kl~~~~ 82 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEK---------QEAEA-----------AEAELAELKELYAEIEEKIEKLKQDS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 35888899988999999888766543322 22222 23344455555555666666666654
No 191
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=34.39 E-value=1.3e+02 Score=25.57 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021006 147 LAEKRQRHYRALLGAAE 163 (318)
Q Consensus 147 l~E~r~r~~r~ll~avE 163 (318)
++++-+|.++.++.-.+
T Consensus 62 ~e~K~~r~i~~ml~~~~ 78 (108)
T COG3937 62 LEEKIPRKIEEMLSDLE 78 (108)
T ss_pred HHHhhhHHHHHHHhhcc
Confidence 33444444444444444
No 192
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.21 E-value=1.2e+02 Score=22.56 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
+.+.+.+|++...+|.+|++.++.+...-..-.+.|+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4456667777777777777777777333333334433
No 193
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.83 E-value=3.2e+02 Score=31.53 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 154 HYRALLGAAEESIARL---LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 221 (318)
Q Consensus 154 ~~r~ll~avE~~~~~r---LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqq 221 (318)
|...-++.+|.++.+. |.||-+-+-+++..+-.|+.++..+..|.+.|...|.....-+.-|.+-.++
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~ 244 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQ 244 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHh
Confidence 4444555555443222 3445555556666677778889999999999999998877765555443333
No 194
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.80 E-value=2.5e+02 Score=22.56 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
|++.++.-..+|+..-.++..|-.+|+.+.+
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555567788899999999999998743
No 195
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=33.76 E-value=4.3e+02 Score=26.95 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=45.5
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 117 LSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 117 l~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
+|.++..+-++|..+...-+..-..+|+....+.-+.... +...-.....++...+.++........+|++++..+..
T Consensus 50 ~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~--l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~ 127 (390)
T PRK10920 50 AGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQE--LEGILKQQAKALDQANRQQAALAKQLDELQQKVATISG 127 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555554444444344333333333333333332222211 33333345566777788888888888889988888875
Q ss_pred HH-HHHH
Q 021006 197 EA-QVWQ 202 (318)
Q Consensus 197 E~-qaWQ 202 (318)
.. ..|.
T Consensus 128 ~~~~dWl 134 (390)
T PRK10920 128 SDAKTWL 134 (390)
T ss_pred CChhhHH
Confidence 44 6674
No 196
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=33.64 E-value=2.7e+02 Score=27.34 Aligned_cols=30 Identities=7% Similarity=0.097 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
..+..+++....+-..+|+++.-|--||..
T Consensus 176 nl~F~rlK~ele~tk~Klee~QnelsAwkF 205 (330)
T KOG2991|consen 176 NLFFLRLKGELEQTKDKLEEAQNELSAWKF 205 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 344444444444444566777777777754
No 197
>PRK14148 heat shock protein GrpE; Provisional
Probab=33.63 E-value=1.7e+02 Score=27.02 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
+|+.+...+.+|.+++.++.+|.+..++++
T Consensus 48 ~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 48 TIKELEDSCDQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555544443
No 198
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.61 E-value=16 Score=31.96 Aligned_cols=25 Identities=24% Similarity=0.751 Sum_probs=17.9
Q ss_pred cccchHh-hCCCCCCCccccCceEEE
Q 021006 291 VCTECDR-VVQACPLCFNVRDSSVEV 315 (318)
Q Consensus 291 lC~~C~~-~l~~CPvCr~~i~~~v~V 315 (318)
+|..|.. .+..||+|..+|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 4566643 367999999999886654
No 199
>PRK14161 heat shock protein GrpE; Provisional
Probab=33.54 E-value=2.8e+02 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
+|+.+..+..+|.+++.++.+|.+..++++.
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666666666665543
No 200
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=33.45 E-value=4.7e+02 Score=25.55 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARA 191 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErl 191 (318)
+|..++.|++......++.|..+
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~ 223 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEV 223 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333
No 201
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.13 E-value=3.4e+02 Score=23.84 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 219 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~L 219 (318)
++.++++++......+++++.++.+..+.+.=+..+...+.....++.++
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENL 174 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333333333333333333333
No 202
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=33.10 E-value=56 Score=31.72 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 181 TRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 181 ~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
..++++|+|.+++|..|.++|..+.+
T Consensus 163 ~~~i~~Lee~I~rLk~E~~~W~~~l~ 188 (301)
T PF08202_consen 163 EENIAELEEKIKRLKEERQAWAQLLK 188 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45688999999999999999988763
No 203
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.07 E-value=9.4e+02 Score=28.97 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 221 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqq 221 (318)
.+.....+++.+..+..+.++.+..+..+...+.......+.....|+.++..
T Consensus 349 ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLae 401 (1486)
T PRK04863 349 KIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLAD 401 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555556666666666666666666555543
No 204
>PRK14154 heat shock protein GrpE; Provisional
Probab=32.93 E-value=2.2e+02 Score=26.64 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=8.8
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 021006 132 LDQFLQAQGEQLRRALAEKR 151 (318)
Q Consensus 132 iD~~i~~q~ErlR~~l~E~r 151 (318)
|+. +....+.+...+++..
T Consensus 54 ~~~-l~~el~~le~e~~elk 72 (208)
T PRK14154 54 REK-LEGQLTRMERKVDEYK 72 (208)
T ss_pred hhh-HHHHHHHHHHHHHHHH
Confidence 444 3334455555555444
No 205
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.57 E-value=2.2e+02 Score=30.92 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQ--VWQA-KARAQEATAASLQAQLQQAIM 224 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~q--aWQ~-~A~~nEa~A~~Lr~~Lqqal~ 224 (318)
.++.+.+|+++.+.+.+|+.++.++..+.. .|.. ..+..+..+..|+.+|+....
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777766543 3443 334455678888888877543
No 206
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.40 E-value=5.9e+02 Score=28.91 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021006 175 AEVEKATRRNAELEARAAQL 194 (318)
Q Consensus 175 eEle~a~rrn~ELEErlrql 194 (318)
-|++-++-+..+|+++|.-+
T Consensus 444 ~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhh
Confidence 34455555555555555443
No 207
>PRK14147 heat shock protein GrpE; Provisional
Probab=32.23 E-value=1.8e+02 Score=26.26 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 021006 131 ELDQFLQAQGEQLRRALAEKRQ 152 (318)
Q Consensus 131 EiD~~i~~q~ErlR~~l~E~r~ 152 (318)
+.+. +....+.|+..+.+...
T Consensus 19 ~~~~-l~~~l~~l~~e~~elkd 39 (172)
T PRK14147 19 ETDP-LKAEVESLRSEIALVKA 39 (172)
T ss_pred cchh-HHHHHHHHHHHHHHHHH
Confidence 3443 33445555555555543
No 208
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.13 E-value=4.2e+02 Score=24.65 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 140 GEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 219 (318)
Q Consensus 140 ~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~L 219 (318)
+-+|-..+.+.|+ +++++=-+ ...-+..++|++.++--...|||.-++|.+.+.---+..+.-.+.+..|..+.
T Consensus 38 na~L~~e~~~L~~-q~~s~Qqa-----l~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 38 NAQLAEEITDLRK-QLKSLQQA-----LQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555443 44444333 33445568899999999999999888888877776666666666666666555
Q ss_pred HHHHHc
Q 021006 220 QQAIMS 225 (318)
Q Consensus 220 qqal~q 225 (318)
......
T Consensus 112 ~kl~~e 117 (193)
T PF14662_consen 112 GKLLAE 117 (193)
T ss_pred hHHHHh
Confidence 554443
No 209
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.13 E-value=3.1e+02 Score=24.58 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=0.0
Q ss_pred hhhhHHHH
Q 021006 125 IKRQRDEL 132 (318)
Q Consensus 125 l~~q~~Ei 132 (318)
+++-+.+.
T Consensus 86 l~r~~~el 93 (194)
T PF08614_consen 86 LYRSKGEL 93 (194)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33433343
No 210
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=32.00 E-value=1.6e+02 Score=31.96 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 021006 160 GAAEESIARLLRE 172 (318)
Q Consensus 160 ~avE~~~~~rLRe 172 (318)
.++|+.-..||..
T Consensus 641 a~~ERee~eRl~~ 653 (940)
T KOG4661|consen 641 AAVEREELERLKA 653 (940)
T ss_pred HHHHHHHHHHHHH
Confidence 4455544444433
No 211
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=31.85 E-value=81 Score=37.56 Aligned_cols=13 Identities=38% Similarity=0.342 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 021006 207 AQEATAASLQAQL 219 (318)
Q Consensus 207 ~nEa~A~~Lr~~L 219 (318)
.++|.+..|..+|
T Consensus 2190 qtaalVRQlQ~qL 2202 (2220)
T KOG3598|consen 2190 QTAALVRQLQMQL 2202 (2220)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444333
No 212
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.83 E-value=7.5e+02 Score=27.44 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=40.8
Q ss_pred hhhhhhHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 021006 123 SPIKRQRDELDQFLQAQ-------------GEQLRRALAEKRQRHYRALLGAAEE--------SIARLLREKEAEVEKAT 181 (318)
Q Consensus 123 ~~l~~q~~EiD~~i~~q-------------~ErlR~~l~E~r~r~~r~ll~avE~--------~~~~rLReKeeEle~a~ 181 (318)
..+.+-..|+|++..+. --+||..|.|.+-|-.|.|-..-|- +-.--||+--.|.|-++
T Consensus 48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~K 127 (717)
T PF09730_consen 48 QELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLK 127 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44556667777776654 5578999999988888877654431 11223555555555555
Q ss_pred HHHHHHHH
Q 021006 182 RRNAELEA 189 (318)
Q Consensus 182 rrn~ELEE 189 (318)
-.+.-|+|
T Consensus 128 hei~rl~E 135 (717)
T PF09730_consen 128 HEIKRLEE 135 (717)
T ss_pred HHHHHHHH
Confidence 44444444
No 213
>PRK14162 heat shock protein GrpE; Provisional
Probab=31.74 E-value=2.1e+02 Score=26.38 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 177 VEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 177 le~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
|+.+..++.+|.+++.++.+|.+..+++
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~rkR 75 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNMQNR 75 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433
No 214
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.35 E-value=6.4e+02 Score=26.50 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
+++-|+|.-|+|+..-+...||+....++....-.+.
T Consensus 289 ~k~eReasle~Enlqmr~qqleeentelRs~~arlks 325 (502)
T KOG0982|consen 289 IKKEREASLEKENLQMRDQQLEEENTELRSLIARLKS 325 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777778877777777777666555555444433
No 215
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.35 E-value=5.9e+02 Score=26.06 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
++++..+.||+++..+..++++.++++..+.
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l 388 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDEL 388 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 4455566677776666666666666555533
No 216
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.30 E-value=1e+02 Score=29.40 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021006 183 RNAELEARAAQLSVEAQVWQ 202 (318)
Q Consensus 183 rn~ELEErlrql~~E~qaWQ 202 (318)
||.|||+.++++..+...-+
T Consensus 94 Rn~ELE~elr~~~~~~~~L~ 113 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLR 113 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 217
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.29 E-value=96 Score=28.83 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQ 199 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~q 199 (318)
|+-+++|.+++||++|..+..+..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556665555555443
No 218
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=31.15 E-value=2.9e+02 Score=22.53 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 172 EKEAEVEKATRRNAELEARAAQLSVEAQ 199 (318)
Q Consensus 172 eKeeEle~a~rrn~ELEErlrql~~E~q 199 (318)
+++.||.++...+..|...+..+....+
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 219
>PRK14145 heat shock protein GrpE; Provisional
Probab=31.00 E-value=3.2e+02 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 021006 128 QRDELDQFLQAQGEQLRRALAEKRQRH 154 (318)
Q Consensus 128 q~~EiD~~i~~q~ErlR~~l~E~r~r~ 154 (318)
-..+|+. +....+.++..+.+..-+.
T Consensus 43 ~~~e~~~-l~~~l~~le~e~~el~d~~ 68 (196)
T PRK14145 43 TVDEIEE-LKQKLQQKEVEAQEYLDIA 68 (196)
T ss_pred chhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4445554 4445566666665555433
No 220
>PRK14153 heat shock protein GrpE; Provisional
Probab=30.79 E-value=2.1e+02 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
+|+.+..++.+|.+++.++.+|.+..+++
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR 69 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKR 69 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444433
No 221
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=30.73 E-value=2e+02 Score=20.53 Aligned_cols=24 Identities=33% Similarity=0.381 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~ 196 (318)
.+.++..+...|..|...+..|..
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444455555554444443
No 222
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.68 E-value=89 Score=35.86 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=27.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 134 QFLQAQGEQLRRALAEKRQRHYRAL--------LGAA-EESIARLLREKEAEVEKATRRNAELEARAAQ 193 (318)
Q Consensus 134 ~~i~~q~ErlR~~l~E~r~r~~r~l--------l~av-E~~~~~rLReKeeEle~a~rrn~ELEErlrq 193 (318)
|=|+.++.|||..|...+. .... +... -..+..+|.|+|.++++++ ..|+|+|++
T Consensus 364 RELreEv~rLksll~~~~~--~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~---etW~EKl~~ 427 (1221)
T KOG0245|consen 364 RELREEVARLKSLLRAQGL--GDIAVEGSPSALLSQPEIEELRERLQETEKIMAELN---ETWEEKLRE 427 (1221)
T ss_pred HHHHHHHHHHHHHHhcccc--ccccccCCcccccccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4455666666666665542 1111 1111 1234556666666665543 356666554
No 223
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=30.61 E-value=91 Score=37.18 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=2.4
Q ss_pred HHHHHH
Q 021006 146 ALAEKR 151 (318)
Q Consensus 146 ~l~E~r 151 (318)
+|+..+
T Consensus 2181 glqqtq 2186 (2220)
T KOG3598|consen 2181 GLQQTQ 2186 (2220)
T ss_pred HHHHHH
Confidence 444433
No 224
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.39 E-value=19 Score=36.55 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=27.8
Q ss_pred cccccccccccc----cceeEEeCCCCcccccchHhhC-------CCCCCCccccC
Q 021006 266 VSGPACKGCRKR----VASVVLLPCRHLCVCTECDRVV-------QACPLCFNVRD 310 (318)
Q Consensus 266 ~~~~~C~vC~~~----~~~vlLlPC~HlclC~~C~~~l-------~~CPvCr~~i~ 310 (318)
.+.-.|+|=.+. ..- +-|+|||. +|+.=..++ =+||+|-....
T Consensus 332 HSvF~CPVlKeqtsdeNPP-m~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPP-MMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred cceeecccchhhccCCCCC-eeeeccce-ecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 445688885542 222 33489998 788776554 28999976443
No 225
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=30.29 E-value=4.1e+02 Score=23.98 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQ 193 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrq 193 (318)
---|||.+..++..||.++++
T Consensus 123 hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 123 HRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555544
No 226
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=30.24 E-value=4.8e+02 Score=25.56 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 181 TRRNAELEARAAQLSVEAQVWQAKARAQEA 210 (318)
Q Consensus 181 ~rrn~ELEErlrql~~E~qaWQ~~A~~nEa 210 (318)
++.+..+||+|+.|..+-+..-..|+..|-
T Consensus 258 raeL~acEEkl~kmeE~Qa~~l~~aR~~er 287 (311)
T PF04642_consen 258 RAELNACEEKLKKMEEEQAEMLRAARTEER 287 (311)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 444556677777776666665555555444
No 227
>PRK14156 heat shock protein GrpE; Provisional
Probab=29.90 E-value=1.7e+02 Score=26.55 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKARA 207 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~ 207 (318)
-+.+|+.+..++.+|.++|.++.+|.+..++++..
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~r 66 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANE 66 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777888888888888777776543
No 228
>PRK14163 heat shock protein GrpE; Provisional
Probab=29.90 E-value=2e+02 Score=27.10 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=14.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 021006 131 ELDQFLQAQGEQLRRALAEKRQRH 154 (318)
Q Consensus 131 EiD~~i~~q~ErlR~~l~E~r~r~ 154 (318)
+++. +....+.|+..+++.+.+.
T Consensus 41 ~~~~-l~~~l~~l~~e~~el~d~~ 63 (214)
T PRK14163 41 ATAG-LTAQLDQVRTALGERTADL 63 (214)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHH
Confidence 3444 5556777777777765443
No 229
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=29.89 E-value=3.5e+02 Score=23.05 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021006 192 AQLSVEAQVWQAKARAQEATAA 213 (318)
Q Consensus 192 rql~~E~qaWQ~~A~~nEa~A~ 213 (318)
.++..|.++|+++-.+.+..+.
T Consensus 97 ERl~~E~~sL~kve~eQ~~~i~ 118 (120)
T PF14931_consen 97 ERLRSEYESLQKVEQEQNELIQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888999888877776654
No 230
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.85 E-value=4.8e+02 Score=26.47 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVE 197 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E 197 (318)
++||..-..++.+.+|+|+|-..+
T Consensus 241 ~EeL~~G~~kL~~~~etLEqq~~~ 264 (365)
T KOG2391|consen 241 EEELNIGKQKLVAMKETLEQQLQS 264 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443333
No 231
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=29.78 E-value=6.6e+02 Score=26.16 Aligned_cols=59 Identities=27% Similarity=0.302 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 166 IARLLREKEAEVEKATRR---------NAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 224 (318)
Q Consensus 166 ~~~rLReKeeEle~a~rr---------n~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~ 224 (318)
..-|+.+|+.||.++... ..|+|.|++++..---.=|.....-...=++|.-+|+.+..
T Consensus 360 ~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 360 LQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLET 427 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHH
Confidence 445677788888777544 34677777777632222222222233334556666666653
No 232
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=29.70 E-value=2.7e+02 Score=22.54 Aligned_cols=70 Identities=26% Similarity=0.303 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 125 IKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 125 l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
+..--+|+|.+|....++...+-.+ ..-.+..+..-+...+.....|..+++++..+..+++..-.+|..
T Consensus 32 v~~kLneLd~Li~eA~~r~~~~~~~--~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~ 101 (109)
T PF03980_consen 32 VVEKLNELDKLIEEAKERKNSGERE--KPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAE 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHhccccC--CCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557777776665544321110 000112233344444445555555555555555554444333333
No 233
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=29.66 E-value=6.8e+02 Score=26.30 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 134 QFLQAQGEQLRRALAEKRQRHYRALLGAAEES 165 (318)
Q Consensus 134 ~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~ 165 (318)
++|+.++||||..|.-..+.+...+....++.
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee 287 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE 287 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888877777766666555544
No 234
>PHA02107 hypothetical protein
Probab=29.59 E-value=1.4e+02 Score=27.41 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 163 EESIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 163 E~~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
=--.+.||.|-|+||.++.-+.+|.|+-++.++-
T Consensus 179 ~~F~S~Ri~EID~EI~~LQA~RKEiEDN~K~IKN 212 (216)
T PHA02107 179 FHFASVRISEIDEEIKELQARRKEIEDNIKSIKN 212 (216)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345789999999999999999999998887653
No 235
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.56 E-value=3.5e+02 Score=26.58 Aligned_cols=53 Identities=26% Similarity=0.294 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
|.+.+++|+....+..++++++..+..+.+.=......-+..+......|+.|
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 44455555555555555666666666555554444444444444444455544
No 236
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=29.44 E-value=1.7e+02 Score=25.83 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021006 175 AEVEKATRRNAELEARA 191 (318)
Q Consensus 175 eEle~a~rrn~ELEErl 191 (318)
+|-..++++.+.+|.|+
T Consensus 45 aeY~aak~~~~~le~rI 61 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRV 61 (156)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 33444444444444443
No 237
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=29.21 E-value=2.5e+02 Score=21.07 Aligned_cols=48 Identities=27% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 137 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQ 193 (318)
Q Consensus 137 ~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrq 193 (318)
--...+++.+|..--+|.+..|+.... ...|.+.+.+.|.||...++|
T Consensus 11 p~~~~~~W~~L~~~l~rY~~vL~~R~~---------l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 11 PDEKIRLWDALENFLKRYNKVLLDRAA---------LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 344567777888888877777766555 666788888899998877765
No 238
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.15 E-value=2.1e+02 Score=29.53 Aligned_cols=51 Identities=31% Similarity=0.409 Sum_probs=43.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 134 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNA 185 (318)
Q Consensus 134 ~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ 185 (318)
.|--.|.|||--.|.|.-+.|...+ +-+...+++.+|..+.|.+++.-+.+
T Consensus 126 ~~~~aq~erlvgeiaenerqhavem-aelsekia~emr~lede~~r~~mrtk 176 (637)
T KOG4421|consen 126 IFEEAQKERLVGEIAENERQHAVEM-AELSEKIADEMRDLEDETERIAMRTK 176 (637)
T ss_pred HHHHHHhhHHHHHHHhhhHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667899999999999999898877 45566889999999999999987643
No 239
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=29.13 E-value=12 Score=37.01 Aligned_cols=44 Identities=20% Similarity=0.464 Sum_probs=28.9
Q ss_pred ccccccccccccc---eeEEeCCCCcccccchHhh----------------------C-----CCCCCCccccCc
Q 021006 267 SGPACKGCRKRVA---SVVLLPCRHLCVCTECDRV----------------------V-----QACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~---~vlLlPC~HlclC~~C~~~----------------------l-----~~CPvCr~~i~~ 311 (318)
..+.|+||.-.-+ .++.-||.|+ +=..|..+ + ..|||||..|..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 3567888865432 3677799999 44455322 0 279999998753
No 240
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=29.02 E-value=32 Score=37.28 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=41.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATR-------RNAELEARAA 192 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~r-------rn~ELEErlr 192 (318)
+|+-.=+..+++.+.++|++++++|.+.|-+- . -...|+++|-+|..+-. ..|-||-|+.
T Consensus 363 eeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~-k--~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~ 429 (669)
T PF08549_consen 363 EEFRKRVAKKIADMNAEIEKMKARHAKRMAKF-K--RNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLD 429 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hccHHHHHHHHHHhccCCccccCccceeeccccc
Confidence 34444566778888999999999999887432 2 24557777777766654 4677776666
No 241
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=28.97 E-value=5.7e+02 Score=25.16 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 128 QRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 128 q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
-+.++..-.+.+..++|-+|-|-. .+....-.+.|.+|..+.-+|..|+-+..+|.+|....+.+-
T Consensus 17 ywk~l~~~ykq~f~~~reEl~EFQ------------egSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~ 82 (333)
T KOG1853|consen 17 YWKLLHHEYKQHFLQMREELNEFQ------------EGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ 82 (333)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666665555542 222333345677888888899999999999988877665543
No 242
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.95 E-value=1.9e+02 Score=25.69 Aligned_cols=35 Identities=31% Similarity=0.759 Sum_probs=20.4
Q ss_pred cccccccccceeEEeCCCCcc------cccchHhh--------CCCCCCCcc
Q 021006 270 ACKGCRKRVASVVLLPCRHLC------VCTECDRV--------VQACPLCFN 307 (318)
Q Consensus 270 ~C~vC~~~~~~vlLlPC~Hlc------lC~~C~~~--------l~~CPvCr~ 307 (318)
.|-||..... ---|||.| +|..|..+ +..|-.|+.
T Consensus 67 tC~IC~KTKF---ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 67 TCGICHKTKF---ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred chhhhhhccc---ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 7888876432 12688875 25555433 236666664
No 243
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.88 E-value=7.5e+02 Score=26.54 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 153 RHYRALLGAAEESI---ARLLREKEAEVEKATRRNAELEARAAQLSVEAQV 200 (318)
Q Consensus 153 r~~r~ll~avE~~~---~~rLReKeeEle~a~rrn~ELEErlrql~~E~qa 200 (318)
+++...|+.+|... -+|.+..++|+.++++.|.-|.+.|..++.+.+.
T Consensus 144 ~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 144 DDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34566677777643 4667778899999999999888888888764443
No 244
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=28.53 E-value=1.9e+02 Score=25.53 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 021006 212 AASLQAQL 219 (318)
Q Consensus 212 A~~Lr~~L 219 (318)
+..|...|
T Consensus 63 I~~L~~~L 70 (157)
T PRK01885 63 VRFLTKRL 70 (157)
T ss_pred HHHHHHHH
Confidence 33333333
No 245
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.46 E-value=8.2e+02 Score=29.18 Aligned_cols=88 Identities=25% Similarity=0.223 Sum_probs=58.7
Q ss_pred HHHHhHHHHHHHHHHHHHHH----------------HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 135 FLQAQGEQLRRALAEKRQRH----------------YRALLGAAEE----------SIARLLREKEAEVEKATRRNAELE 188 (318)
Q Consensus 135 ~i~~q~ErlR~~l~E~r~r~----------------~r~ll~avE~----------~~~~rLReKeeEle~a~rrn~ELE 188 (318)
.|+...|-++.+|++.-+.+ .+.+|..|+. .+..+|++.+.-++.++.+.+.--
T Consensus 1560 ~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns 1639 (1758)
T KOG0994|consen 1560 DVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNS 1639 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666666666654432 3344444433 346788888888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 189 ARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 189 Erlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
+..+++..++..-+..|.+.|...+.|...++.+
T Consensus 1640 ~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~ 1673 (1758)
T KOG0994|consen 1640 AEAKQAEKTAGSAKEQALSAEQGLEILQKYYELV 1673 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777778877777776666655543
No 246
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.33 E-value=35 Score=33.79 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=27.0
Q ss_pred ccccCCCCcCcCCCcccccccccccccceeEEeCCCCcccccchHhhC-----------------CCCCCCccc
Q 021006 252 ESAYVDPDRVVSVPVSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----------------QACPLCFNV 308 (318)
Q Consensus 252 ~S~~~d~~r~~~~~~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l-----------------~~CPvCr~~ 308 (318)
+.+|.|-++....-..+..|-.|+-++. -|.+|-+.. -.||+||+.
T Consensus 301 ~~~c~~~~~~~~~~~~ga~c~nc~crp~-----------wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~ 363 (381)
T KOG3899|consen 301 ERSCDGQEQRVFFHDIGAPCENCICRPL-----------WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKN 363 (381)
T ss_pred hhcccchhhcccccccCCcccccccccH-----------HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhc
Confidence 4444444443222234557888875554 388995441 389999975
No 247
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.99 E-value=1e+03 Score=27.70 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEARAA 192 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEErlr 192 (318)
+.++.+++.||+...+...+|.|..-
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555554443
No 248
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=27.94 E-value=58 Score=32.16 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=25.3
Q ss_pred cccccccccccceeEEeCC-----CCcccccchHhh--C--CCCCCCccc
Q 021006 268 GPACKGCRKRVASVVLLPC-----RHLCVCTECDRV--V--QACPLCFNV 308 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC-----~HlclC~~C~~~--l--~~CPvCr~~ 308 (318)
...|.||+..+...++..- || ..|.-|... + ..||.|...
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~Ry-L~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRY-LHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceE-EEcCCCCCcccccCccCCCCCCC
Confidence 5689999988864333211 22 268888644 2 389999864
No 249
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=27.76 E-value=2.5e+02 Score=20.71 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
+.....+...+..+..+|..+|..|...+..|+...
T Consensus 68 ~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 68 IDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344456678888889999999999998888887653
No 250
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=27.72 E-value=1.3e+02 Score=26.82 Aligned_cols=12 Identities=33% Similarity=0.349 Sum_probs=6.8
Q ss_pred hhhhHHHHHHHH
Q 021006 125 IKRQRDELDQFL 136 (318)
Q Consensus 125 l~~q~~EiD~~i 136 (318)
+++-+.|+++|.
T Consensus 36 ~~~L~~El~~L~ 47 (160)
T PRK06342 36 LKALEDQLAQAR 47 (160)
T ss_pred HHHHHHHHHHHH
Confidence 445556666654
No 251
>PRK14164 heat shock protein GrpE; Provisional
Probab=27.66 E-value=1.9e+02 Score=27.28 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=7.3
Q ss_pred HhHHHHHHHHHHHHH
Q 021006 138 AQGEQLRRALAEKRQ 152 (318)
Q Consensus 138 ~q~ErlR~~l~E~r~ 152 (318)
...+.|...++|.+.
T Consensus 77 ~~~~~le~el~el~d 91 (218)
T PRK14164 77 GEASTVEAQLAERTE 91 (218)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344455555555443
No 252
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=27.57 E-value=3.6e+02 Score=22.41 Aligned_cols=14 Identities=36% Similarity=0.413 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKAT 181 (318)
Q Consensus 168 ~rLReKeeEle~a~ 181 (318)
.||-+|..|++...
T Consensus 4 ~ri~eKk~ELe~L~ 17 (103)
T PF08654_consen 4 ARIAEKKAELEALK 17 (103)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666553
No 253
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=27.33 E-value=9.1e+02 Score=27.00 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKRQRHYRALLG 160 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~ 160 (318)
..+|--|+.=+.+||..=+|+-++-.-+++.
T Consensus 48 ~hld~aLkec~~qlr~~ree~eq~i~~~~~~ 78 (769)
T PF05911_consen 48 SHLDGALKECMRQLRQVREEQEQKIHEAVAK 78 (769)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4567777777777777777776654444433
No 254
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=27.33 E-value=1.4e+02 Score=22.51 Aligned_cols=21 Identities=38% Similarity=0.291 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 183 RNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 183 rn~ELEErlrql~~E~qaWQ~ 203 (318)
|...||.|+.....+.+.-..
T Consensus 33 RLa~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 33 RLAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 255
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.09 E-value=1.1e+03 Score=27.88 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 139 QGEQLRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 216 (318)
Q Consensus 139 q~ErlR~~l~E~r~r~--~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr 216 (318)
..++++..|++..++. ...|+..-.......++.+-.++-.+..+..++.+.+..+..+....+......+.....|.
T Consensus 231 ~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 310 (1353)
T TIGR02680 231 QLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALE 310 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHc
Q 021006 217 AQLQQAIMS 225 (318)
Q Consensus 217 ~~Lqqal~q 225 (318)
.+++.+...
T Consensus 311 ~~~~~l~~~ 319 (1353)
T TIGR02680 311 READALRTR 319 (1353)
T ss_pred HHHHHHHHH
No 256
>PRK14144 heat shock protein GrpE; Provisional
Probab=27.08 E-value=3.7e+02 Score=24.99 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021006 185 AELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 185 ~ELEErlrql~~E~qaWQ~ 203 (318)
.+|.+++.++.+|.+..++
T Consensus 62 ~elkdk~lR~~AefeN~RK 80 (199)
T PRK14144 62 HENWEKSVRALAELENVRR 80 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 257
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.00 E-value=3e+02 Score=21.37 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 220 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lq 220 (318)
+.....|+++...+|.+|.+.-..|..|++.-+..-..-.....+|=..++
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334556888888999999999999999999888665555555665555444
No 258
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=26.90 E-value=4.1e+02 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=10.8
Q ss_pred hhhhhhhhhhHHHHHHHHH
Q 021006 119 DDLASPIKRQRDELDQFLQ 137 (318)
Q Consensus 119 ~~l~~~l~~q~~EiD~~i~ 137 (318)
..|+.-|=.--..||.||.
T Consensus 72 ~elA~dIi~kakqIe~LId 90 (144)
T PF11221_consen 72 KELATDIIRKAKQIEYLID 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455557777775
No 259
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=26.90 E-value=25 Score=25.61 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=8.4
Q ss_pred CCCCCccccCceEE
Q 021006 301 ACPLCFNVRDSSVE 314 (318)
Q Consensus 301 ~CPvCr~~i~~~v~ 314 (318)
.||+|..++..+..
T Consensus 36 ~CP~C~a~K~~F~~ 49 (50)
T cd00730 36 VCPVCGAGKDDFEP 49 (50)
T ss_pred CCCCCCCcHHHcEe
Confidence 66666666655543
No 260
>PRK14141 heat shock protein GrpE; Provisional
Probab=26.74 E-value=2.3e+02 Score=26.53 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
+|+.+...+.+|.+++.++.+|.+..++++
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR~ 68 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKRT 68 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555444
No 261
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.56 E-value=5.2e+02 Score=27.58 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 021006 139 QGEQLRRALAEKRQRHYR 156 (318)
Q Consensus 139 q~ErlR~~l~E~r~r~~r 156 (318)
..++++..+++++++|..
T Consensus 165 ~~~~~~~~~k~~~~~w~~ 182 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKK 182 (555)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777777777766653
No 262
>PF14645 Chibby: Chibby family
Probab=26.49 E-value=2.6e+02 Score=23.70 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 219 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~L 219 (318)
...+..+.+++|..|+|...-|..+++.--+..-+..+.+..+..+|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577778888888888888888888888887766666666555444
No 263
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=26.48 E-value=11 Score=36.51 Aligned_cols=42 Identities=21% Similarity=0.554 Sum_probs=27.9
Q ss_pred ccccccccc----cceeEEeCCCCcccccchHhhC----CCCCCCccccCce
Q 021006 269 PACKGCRKR----VASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSS 312 (318)
Q Consensus 269 ~~C~vC~~~----~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~~i~~~ 312 (318)
..|.+|.+. ...+-++||+|.-- ..|...+ -.||+|.. +...
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDM 208 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHH
Confidence 348888763 44567789999863 4554332 49999988 5443
No 264
>PRK14160 heat shock protein GrpE; Provisional
Probab=26.02 E-value=5e+02 Score=24.34 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
+++|+.+.....+|.+++.++.+|.+..++++
T Consensus 67 ~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 67 KEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544
No 265
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=26.00 E-value=47 Score=38.64 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=32.3
Q ss_pred cccccccccccceeEEeC-CCCcc----cccchHhhC--C-----CCCCCccccCceEEE
Q 021006 268 GPACKGCRKRVASVVLLP-CRHLC----VCTECDRVV--Q-----ACPLCFNVRDSSVEV 315 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlP-C~Hlc----lC~~C~~~l--~-----~CPvCr~~i~~~v~V 315 (318)
...|..|...... .+-| ||... .|..|...+ . .||-|..+.......
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 3689999875443 3556 87552 588897653 2 799999887776543
No 266
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.94 E-value=6.2e+02 Score=24.63 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
|.+...||......+.+....+.++..+...+.....+.++....+..++..+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444555555566666666555555555555555544
No 267
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.82 E-value=8.3e+02 Score=26.06 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARA 191 (318)
Q Consensus 176 Ele~a~rrn~ELEErl 191 (318)
+|+.+.+...+++..+
T Consensus 450 ~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 450 QLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333444333
No 268
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.79 E-value=1.1e+03 Score=27.47 Aligned_cols=86 Identities=19% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 021006 129 RDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA---------- 198 (318)
Q Consensus 129 ~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~---------- 198 (318)
.+|=|-||+-+.++|..++.+.. -....+..==..+-.-|.+++++|..+..-+-+...||..+.++.
T Consensus 388 k~eRDkwir~ei~~l~~~i~~~k--e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 388 KEERDKWIRSEIEKLKRGINDTK--EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHHHH
Q 021006 199 -----QVWQAKARAQEATAASLQ 216 (318)
Q Consensus 199 -----qaWQ~~A~~nEa~A~~Lr 216 (318)
..|+...+-.-..++...
T Consensus 466 ~~~Rk~lWREE~~l~~~i~~~~~ 488 (1200)
T KOG0964|consen 466 QDKRKELWREEKKLRSLIANLEE 488 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 269
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=25.77 E-value=4.8e+02 Score=23.26 Aligned_cols=97 Identities=27% Similarity=0.399 Sum_probs=54.0
Q ss_pred hhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 021006 120 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIAR---------LLREKEAEVEKATRRNAELEAR 190 (318)
Q Consensus 120 ~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~---------rLReKeeEle~a~rrn~ELEEr 190 (318)
+||+-|. .|+.++|...+.-.-.+|-=+. ..+|..+|..+++ +|++..+.|..-.++-+++..+
T Consensus 3 ~lA~~Ig---~EfE~lId~~G~e~v~~LmP~V----V~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~ 75 (158)
T PF09744_consen 3 DLASSIG---KEFERLIDRYGEEAVKGLMPKV----VRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQ 75 (158)
T ss_pred HHHHHHH---HHHHHHHHHhChhHHHHHHHHH----HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454 4677777777766655554442 4455555555443 3444444444433343333322
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 191 AA-QLSVEAQVWQAKARAQEATAASLQAQLQQAI 223 (318)
Q Consensus 191 lr-ql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal 223 (318)
.. .+-.--+.|....+.-...+..|.....++.
T Consensus 76 ~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 76 AEEELLELEDQWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1111136888888888888888887776654
No 270
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.72 E-value=28 Score=35.25 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=15.1
Q ss_pred ccccccccccceeEEeCCCCcccccchHh
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDR 297 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~ 297 (318)
..|.||+++.+..-. | +..|..|..
T Consensus 16 ElCPVCGDkVSGYHY---G-LLTCESCKG 40 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHY---G-LLTCESCKG 40 (475)
T ss_pred cccccccCcccccee---e-eeehhhhhh
Confidence 479999988775311 0 125777743
No 271
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=25.55 E-value=5.2e+02 Score=23.61 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 219 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~L 219 (318)
++++|.+|.++.+++.+|++....+..+..+=-.....-++-+..+...+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666555555444443333333334444444333
No 272
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.52 E-value=2.5e+02 Score=23.45 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=20.8
Q ss_pred chhcchhhhhhhhhhhHHHHHHHHHHhHHH
Q 021006 113 LLSFLSDDLASPIKRQRDELDQFLQAQGEQ 142 (318)
Q Consensus 113 ~~s~l~~~l~~~l~~q~~EiD~~i~~q~Er 142 (318)
+.-+++++-.+..++.+.+.|.-+...+|.
T Consensus 51 p~IlmsQNRq~~~dr~ra~~D~~inl~ae~ 80 (108)
T PF06210_consen 51 PLILMSQNRQAARDRLRAELDYQINLKAEQ 80 (108)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHhHH
Confidence 344578887777888888888777655443
No 273
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.35 E-value=5.2e+02 Score=24.62 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=34.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHH
Q 021006 133 DQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKA--TRRNAELEARAAQLSVE-AQVWQAK 204 (318)
Q Consensus 133 D~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a--~rrn~ELEErlrql~~E-~qaWQ~~ 204 (318)
+.-|..+.-+|-+.|+-+|++. .+.+--.|-|.-++||+.. .++-.||+--|..-+.+ ...|+.+
T Consensus 156 k~av~~~~mklfae~erkRk~~-------e~r~~~eRkr~re~eIeaeek~Kr~~E~qKnfEEsRd~Rv~sWrnF 223 (250)
T KOG1150|consen 156 KQAVYKQVMKLFAELERKRKEL-------EARANEERKRQREEEIEAEEKRKREREWQKNFEESRDGRVGSWRNF 223 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 4455566666767776666532 1222235566777788777 44444444333222221 2567765
No 274
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=25.09 E-value=1.6e+02 Score=22.17 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 187 LEARAAQLSVEAQVWQAKARAQEATA 212 (318)
Q Consensus 187 LEErlrql~~E~qaWQ~~A~~nEa~A 212 (318)
+|.|+..|...-+.-..+|+..|..+
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444444444444443
No 275
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.78 E-value=8.9e+02 Score=26.02 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 198 AQVWQAKARAQEATAASLQAQ 218 (318)
Q Consensus 198 ~qaWQ~~A~~nEa~A~~Lr~~ 218 (318)
.+.++......+..+..|+.+
T Consensus 292 Lr~~qe~lqaSqq~~~~L~~E 312 (546)
T PF07888_consen 292 LRSAQEQLQASQQEAELLRKE 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 276
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=24.76 E-value=49 Score=26.84 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=20.3
Q ss_pred eEEeCCCCcccccchHhh-------CCCCCCCccccC
Q 021006 281 VVLLPCRHLCVCTECDRV-------VQACPLCFNVRD 310 (318)
Q Consensus 281 vlLlPC~HlclC~~C~~~-------l~~CPvCr~~i~ 310 (318)
+++--|+|. +=.-|-.. -..||+||.+..
T Consensus 47 lv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 456679997 67777322 359999998653
No 277
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=24.63 E-value=3.1e+02 Score=20.64 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 172 EKEAEVEKATRRNAELEARAAQLSVEAQVW 201 (318)
Q Consensus 172 eKeeEle~a~rrn~ELEErlrql~~E~qaW 201 (318)
++..-|.++.+...|.++-|.|+..|.+.-
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666666777777777777776543
No 278
>PRK14146 heat shock protein GrpE; Provisional
Probab=24.30 E-value=2.6e+02 Score=26.22 Aligned_cols=10 Identities=0% Similarity=0.285 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 021006 141 EQLRRALAEK 150 (318)
Q Consensus 141 ErlR~~l~E~ 150 (318)
+.++..+.+.
T Consensus 64 ~~l~~e~~el 73 (215)
T PRK14146 64 DNAKKEIESL 73 (215)
T ss_pred HHHHHHHHHH
Confidence 3344333333
No 279
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=24.01 E-value=2e+02 Score=23.81 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 180 ATRRNAELEARAAQLSVEAQVWQAKARAQEA 210 (318)
Q Consensus 180 a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa 210 (318)
....+.+|+..+++|.+|++..++.+..-++
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~~ 106 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGRA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3445677888888889999887776554433
No 280
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.01 E-value=9.5e+02 Score=26.05 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 184 NAELEARAAQLSVEAQVWQAKARAQEATAASL 215 (318)
Q Consensus 184 n~ELEErlrql~~E~qaWQ~~A~~nEa~A~~L 215 (318)
+++|.+++-++..+...|+........-+..|
T Consensus 197 ~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L 228 (617)
T PF15070_consen 197 KKELQKKLGELQEKLHNLKEKLELKSQEAQSL 228 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45666666677777777776655554444443
No 281
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.00 E-value=4.8e+02 Score=22.63 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEAT 211 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~ 211 (318)
.++-++|.||....+++..||+.+.++......-+..+.+.+..
T Consensus 28 ~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 28 QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56778999999999999999999999988777777666655543
No 282
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=23.87 E-value=15 Score=36.53 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=32.9
Q ss_pred ccccccccccccee-EEeCCCCcccccchHhh----CCCCCCCccccCceE
Q 021006 268 GPACKGCRKRVASV-VLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 313 (318)
Q Consensus 268 ~~~C~vC~~~~~~v-lLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 313 (318)
-..|.+|.+=-.+. .+.-|=|- +|+.|--. ...||.|...|..+.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 35899997754432 23368888 89999544 469999999988775
No 283
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.74 E-value=7.8e+02 Score=25.02 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=9.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKR 151 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r 151 (318)
+.|++-.+...|++.+.+++.+
T Consensus 217 eklR~r~eeeme~~~aeq~slk 238 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLK 238 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 284
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.63 E-value=9.2e+02 Score=25.76 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 140 GEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQ 193 (318)
Q Consensus 140 ~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrq 193 (318)
.++|+.-|.+..++...... -....+++.+.+.++..+..+..++++.|..
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~---~~~~~~~~~~le~el~~l~~~~e~l~~~i~~ 234 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSEL---PSSILSEIEALEAELKEQSEKYEDLAQEIAH 234 (650)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444433321 1223334444444444444443333333333
No 285
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=23.62 E-value=3.3e+02 Score=22.91 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 154 HYRALLGAAEE----SIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 154 ~~r~ll~avE~----~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
..|..+..++. +++..=+||+..+..+...-+.||.+++++..
T Consensus 48 kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKnlnt 94 (107)
T PRK15365 48 KSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNA 94 (107)
T ss_pred HHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555665555 45555688888888888888899988887753
No 286
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=23.61 E-value=2e+02 Score=24.93 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 021006 208 QEATAASLQAQLQQ 221 (318)
Q Consensus 208 nEa~A~~Lr~~Lqq 221 (318)
.+..+..|...|..
T Consensus 54 ~e~ri~~L~~~L~~ 67 (151)
T TIGR01462 54 NEGRIAELEDLLAN 67 (151)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444443
No 287
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=23.60 E-value=4.9e+02 Score=23.81 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021006 179 KATRRNAELEARAAQLSVE 197 (318)
Q Consensus 179 ~a~rrn~ELEErlrql~~E 197 (318)
++.+++.+|++.+....+|
T Consensus 157 e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 157 ELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3344555666666555544
No 288
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=23.60 E-value=3.7e+02 Score=21.16 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=18.0
Q ss_pred chhhhhhhhhhhHHHHHHHHHHh
Q 021006 117 LSDDLASPIKRQRDELDQFLQAQ 139 (318)
Q Consensus 117 l~~~l~~~l~~q~~EiD~~i~~q 139 (318)
.++.|+.-|+.-.+|++++-..+
T Consensus 11 p~~~Ls~vl~~LqDE~~hm~~e~ 33 (79)
T PF06657_consen 11 PGEALSEVLKALQDEFGHMKMEH 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888889998865544
No 289
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=23.52 E-value=1.7e+02 Score=25.34 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLR 171 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLR 171 (318)
+||| .++...+..++.++|. .|-.|+.++.+|..+.|+|=
T Consensus 86 edID-~~~a~i~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~ 125 (136)
T PRK13447 86 EDLA-RLEAVVRAVRAAQLDA-ARRARVEQTRLHAQAVRQLL 125 (136)
T ss_pred hhcC-HHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4666 5556666655555554 34678888888888887763
No 290
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=23.15 E-value=8.7e+02 Score=25.33 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.2
Q ss_pred hhhhhh
Q 021006 121 LASPIK 126 (318)
Q Consensus 121 l~~~l~ 126 (318)
+...++
T Consensus 297 ~~~~le 302 (582)
T PF09731_consen 297 LEQELE 302 (582)
T ss_pred HHHHHH
Confidence 333333
No 291
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=28 Score=37.76 Aligned_cols=38 Identities=26% Similarity=0.635 Sum_probs=26.2
Q ss_pred cccccccc----ccceeEEeCCCCcccccchHhhC--CCCCCCccc
Q 021006 269 PACKGCRK----RVASVVLLPCRHLCVCTECDRVV--QACPLCFNV 308 (318)
Q Consensus 269 ~~C~vC~~----~~~~vlLlPC~HlclC~~C~~~l--~~CPvCr~~ 308 (318)
..|.+|.. ....-+++-|+|. +|.-|...+ ..|| |.-.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCcc
Confidence 35777733 2334566789998 899999885 5898 5443
No 292
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.04 E-value=30 Score=24.87 Aligned_cols=10 Identities=50% Similarity=1.029 Sum_probs=4.1
Q ss_pred CCCCCccccC
Q 021006 301 ACPLCFNVRD 310 (318)
Q Consensus 301 ~CPvCr~~i~ 310 (318)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6777776654
No 293
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.97 E-value=7.2e+02 Score=24.29 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 184 NAELEARAAQLSVEAQVWQAKARA 207 (318)
Q Consensus 184 n~ELEErlrql~~E~qaWQ~~A~~ 207 (318)
..+++|.+++...|...|+..-.+
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e 232 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITE 232 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555555555554433
No 294
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.90 E-value=5.9e+02 Score=23.28 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
-.|++..+.+|....-.+..|+.|+.+|..|-+.|...
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888999999999998888754
No 295
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.73 E-value=5.8e+02 Score=23.12 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 171 REKEAEVEKATRRNAELEARAAQLSVEAQ 199 (318)
Q Consensus 171 ReKeeEle~a~rrn~ELEErlrql~~E~q 199 (318)
|+-.+|-.....+..+|++.+++|..|..
T Consensus 99 r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 99 REESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666666666555
No 296
>PRK14127 cell division protein GpsB; Provisional
Probab=22.69 E-value=2.1e+02 Score=24.14 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
+++...+.+.+|.+.++.+..+...|+...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666666766666666666666543
No 297
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.67 E-value=8.6e+02 Score=25.11 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
.++++.....-+.+++..+..+.......-++.+.....|+.+|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555555555555555555555555556666655444
No 298
>PHA01750 hypothetical protein
Probab=22.50 E-value=3.9e+02 Score=21.00 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=10.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKR 151 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r 151 (318)
+-|..+++.+.+.||..+++-.
T Consensus 34 dAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 34 DAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555444443
No 299
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=9.7e+02 Score=27.31 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021006 177 VEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 177 le~a~rrn~ELEErlrql~~E~ 198 (318)
|++..+...||| +.||+..|-
T Consensus 395 ie~rEaar~ElE-kqRqlewEr 415 (1118)
T KOG1029|consen 395 IERREAAREELE-KQRQLEWER 415 (1118)
T ss_pred HHHHHHHHHHHH-HHHHHHHHH
Confidence 333333344443 345555543
No 300
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=22.15 E-value=1.8e+02 Score=31.74 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 160 GAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 160 ~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
.-....|.+++.+-.+|||+++++.+.--+++++.+
T Consensus 363 eeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~s 398 (669)
T PF08549_consen 363 EEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRNS 398 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334456778889999999999988776666655544
No 301
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.15 E-value=66 Score=31.30 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=28.2
Q ss_pred ccccccccc----ccceeEEeCCCCcccccchHh--hCCCCCCCccccCceEEE
Q 021006 268 GPACKGCRK----RVASVVLLPCRHLCVCTECDR--VVQACPLCFNVRDSSVEV 315 (318)
Q Consensus 268 ~~~C~vC~~----~~~~vlLlPC~HlclC~~C~~--~l~~CPvCr~~i~~~v~V 315 (318)
...|+|=+. ...-++|++|||.-. ..=-. ....|++|..+....-.|
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~S-erAlKeikas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFS-ERALKEIKASVCHVCGAAYQEDDVI 163 (293)
T ss_pred eeecccccceecceEEEEEEeccceecc-HHHHHHhhhccccccCCcccccCeE
Confidence 346666543 344577889999831 11111 136999999987665444
No 302
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.07 E-value=50 Score=32.73 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=14.2
Q ss_pred CCCCCCCccccCceEEE
Q 021006 299 VQACPLCFNVRDSSVEV 315 (318)
Q Consensus 299 l~~CPvCr~~i~~~v~V 315 (318)
+..|++||.+|++.|-.
T Consensus 42 k~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 42 KKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CCCCceecCCCCcchhc
Confidence 56899999999998743
No 303
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=22.07 E-value=1.5e+02 Score=26.64 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 209 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A~~nE 209 (318)
|-..+.++..+|++.+..+..|...|+....+.+
T Consensus 56 ~~~~~~~k~~el~~eiekvkke~Eekq~~k~~k~ 89 (182)
T PF08432_consen 56 EYVEAKKKKKELEEEIEKVKKEYEEKQKWKKEKE 89 (182)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHhhhhh
Confidence 3334445555666666666777777777654433
No 304
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=21.97 E-value=9.1e+02 Score=27.16 Aligned_cols=54 Identities=35% Similarity=0.481 Sum_probs=33.2
Q ss_pred HHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQR------HYRALLGAAEESIARLLREKEAEVEKATRRNAELEA 189 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~r------~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEE 189 (318)
+..+++++-..|...|+| |...|...+++...--+.|--+-++++++...+++-
T Consensus 168 l~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s 227 (916)
T KOG0249|consen 168 LEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELES 227 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777765 556666667755555555555555555555555443
No 305
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=21.91 E-value=8.3e+02 Score=25.83 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 164 ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 164 ~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
+..+..++. |+..-..|..+||++...+.-|+...+..+.
T Consensus 131 r~tS~~~~~---eva~~~qKl~~LE~kqe~l~renlelkelc~ 170 (513)
T KOG3819|consen 131 RQTSGAMLP---EVAGYQQKLYELENKQEELLRENLELKELCH 170 (513)
T ss_pred hhhhhhhhH---HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 344444444 6777777777888777777777666555543
No 306
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.80 E-value=4.5e+02 Score=21.55 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
+=+.+.++++....+....+.|+..+..+.
T Consensus 29 ~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l 58 (106)
T PF10805_consen 29 RTYAKREDIEKLEERLDEHDRRLQALETKL 58 (106)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666444444444444444433
No 307
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.75 E-value=49 Score=33.23 Aligned_cols=29 Identities=28% Similarity=0.793 Sum_probs=25.7
Q ss_pred cccccccccccceeEEeCCC--CcccccchHh
Q 021006 268 GPACKGCRKRVASVVLLPCR--HLCVCTECDR 297 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~--HlclC~~C~~ 297 (318)
...|..|-+....|+++||. |. .|-.|..
T Consensus 221 ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr 251 (446)
T KOG0006|consen 221 NITCITCTDVRSPVLVFQCNSRHV-TCLDCFR 251 (446)
T ss_pred cceeEEecCCccceEEEecCCcee-ehHHhhh
Confidence 45899999999999999999 87 7999975
No 308
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=21.75 E-value=27 Score=35.23 Aligned_cols=41 Identities=24% Similarity=0.563 Sum_probs=26.9
Q ss_pred cccccccc----cceeEEeCCCCcccccchHhhC-----CCCCCCccccCc
Q 021006 270 ACKGCRKR----VASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 311 (318)
Q Consensus 270 ~C~vC~~~----~~~vlLlPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 311 (318)
.|..|.+. .....--|||-. +|..|...+ ..||.||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 47778764 223333355555 799998775 499999986554
No 309
>PRK14149 heat shock protein GrpE; Provisional
Probab=21.72 E-value=4.3e+02 Score=24.39 Aligned_cols=7 Identities=14% Similarity=0.145 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 021006 143 LRRALAE 149 (318)
Q Consensus 143 lR~~l~E 149 (318)
|...+++
T Consensus 48 l~~e~~e 54 (191)
T PRK14149 48 FELKYKE 54 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 310
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.67 E-value=1.2e+02 Score=18.90 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARA 191 (318)
Q Consensus 176 Ele~a~rrn~ELEErl 191 (318)
||++.+.++.+||-+|
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6788888888888554
No 311
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=21.66 E-value=1.3e+03 Score=26.70 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAAS 214 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~ 214 (318)
+++.......+++.++..+..+...|.......+..+..
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~ 832 (1163)
T COG1196 794 ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555544333333333
No 312
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=21.55 E-value=3.6e+02 Score=28.20 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=12.0
Q ss_pred chhhhhhhhhhhHHHHHHHHHH
Q 021006 117 LSDDLASPIKRQRDELDQFLQA 138 (318)
Q Consensus 117 l~~~l~~~l~~q~~EiD~~i~~ 138 (318)
+.++....+++.+...|.+-+.
T Consensus 309 v~~e~~~~~kka~~~~~~~~~~ 330 (446)
T PF07227_consen 309 VAEEKMRMLKKARLALETCDRE 330 (446)
T ss_pred hhhcchhhhhhhhhhhhhhhhH
Confidence 4555555566655555554443
No 313
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=21.50 E-value=4.1e+02 Score=20.96 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=42.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 021006 137 QAQGEQLRRALAEKRQRHYRALLGAAE--ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ----AKARAQEA 210 (318)
Q Consensus 137 ~~q~ErlR~~l~E~r~r~~r~ll~avE--~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ----~~A~~nEa 210 (318)
+..+.+++..+.+.++-|...+ .+.. ..+..+|.. .++.++.+..++-.+|+.|..+...-. ...+....
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l-~~~~~~~~~~~~l~~---~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~ 89 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELL-TPPDADKELREKLER---LIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKA 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHH
Confidence 3444555555555555444443 3332 223333433 445556666666667777765543211 12344455
Q ss_pred HHHHHHHHHHHHHH
Q 021006 211 TAASLQAQLQQAIM 224 (318)
Q Consensus 211 ~A~~Lr~~Lqqal~ 224 (318)
....|...+..++.
T Consensus 90 q~~~L~~~f~~~m~ 103 (117)
T smart00503 90 QTEKLRKKFKEVMN 103 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666665543
No 314
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=21.32 E-value=4.4e+02 Score=21.22 Aligned_cols=19 Identities=42% Similarity=0.494 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021006 171 REKEAEVEKATRRNAELEA 189 (318)
Q Consensus 171 ReKeeEle~a~rrn~ELEE 189 (318)
.+.+.+++.+......|++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF11740_consen 98 AAAEAELAEAEAQAEELEA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444434333
No 315
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=21.22 E-value=2.3e+02 Score=25.00 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 198 AQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 198 ~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
.++=+..-...++.+..|...|..|
T Consensus 47 Y~aak~~~~~le~rI~~L~~~L~~A 71 (156)
T TIGR01461 47 YQYGKKRLREIDRRVRFLTKRLENL 71 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444555666665555443
No 316
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=21.20 E-value=8.2e+02 Score=24.30 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAEL-EARAAQLSVEAQVWQAKARAQEATAASLQAQ 218 (318)
Q Consensus 173 KeeEle~a~rrn~EL-EErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~ 218 (318)
|-+||.+...+...+ |+.|..|++|--.+-..=++.|....++|..
T Consensus 226 kAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk~de~lg~~~rf~ 272 (302)
T PF07139_consen 226 KAEELKRLTDRASQMSEEQLAELRADIKHFVSERKYDEELGRAARFT 272 (302)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhHHHHhHhhhcc
Confidence 445566665555544 3577777777777777777777777776654
No 317
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=21.02 E-value=8.1e+02 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021006 184 NAELEARAAQLSVEAQV 200 (318)
Q Consensus 184 n~ELEErlrql~~E~qa 200 (318)
..+|||+++++..|-..
T Consensus 118 ~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 118 ISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67888888888776543
No 318
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.84 E-value=1.2e+03 Score=25.98 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 119 DDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRAL------LGAAEESIARLLREKEAEVEKATRRNAELEARAA 192 (318)
Q Consensus 119 ~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~l------l~avE~~~~~rLReKeeEle~a~rrn~ELEErlr 192 (318)
..+...+.....+++. +....+.++..+.+......... +..--...-.++...+.+++....+...++.++.
T Consensus 247 ~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 325 (1164)
T TIGR02169 247 ASLEEELEKLTEEISE-LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325 (1164)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021006 193 QLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 225 (318)
Q Consensus 193 ql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q 225 (318)
.+..+...+.....+.+.....+...+......
T Consensus 326 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 358 (1164)
T TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEE 358 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 319
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=20.64 E-value=54 Score=32.72 Aligned_cols=46 Identities=22% Similarity=0.608 Sum_probs=34.2
Q ss_pred ccccccccccc----cceeEEeCCCCcccccchHhhC----CCCCCCccccCceE
Q 021006 267 SGPACKGCRKR----VASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSV 313 (318)
Q Consensus 267 ~~~~C~vC~~~----~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~~i~~~v 313 (318)
..+.|.+|++- ...++=.||++. +|..|-... ..||.||.+.....
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred cCCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 34789999983 345565688998 899997664 49999998766543
No 320
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.62 E-value=2.2e+02 Score=22.64 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEAQVW 201 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~qaW 201 (318)
.+++|+.+..+...++.++.-+...-..|
T Consensus 75 l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 75 LEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444443333333
No 321
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=20.59 E-value=6.7e+02 Score=23.07 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=46.3
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHH
Q 021006 121 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNA--EL--EARAAQLSV 196 (318)
Q Consensus 121 l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~--EL--EErlrql~~ 196 (318)
..+++..+..-+.-+ |=|-..-......|.. .|..+...+-+.|..+..+|+.+++.-+ .. ...|+.|..
T Consensus 109 a~a~lehq~~R~~NL-----eLl~~~g~naW~~~n~-~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~ 182 (221)
T PF05700_consen 109 AYAQLEHQRLRLENL-----ELLSKYGENAWLIHNE-QLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQ 182 (221)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555555444311 1233333333444443 3344444555556666666666654322 21 123344433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021006 197 EAQVWQAKARAQEATAASLQAQLQQAIMSG 226 (318)
Q Consensus 197 E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q~ 226 (318)
.+..--..--+-|..+..|+.++.+.....
T Consensus 183 ~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 183 RWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444556667777776665543
No 322
>PLN03188 kinesin-12 family protein; Provisional
Probab=20.57 E-value=1.4e+03 Score=27.23 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
=||||.|+-+.-+.++.++.|.--..++.
T Consensus 1204 vrl~eaeea~~~a~~r~~~~eqe~~~~~k 1232 (1320)
T PLN03188 1204 VRLKEAEEALTVAQKRAMDAEQEAAEAYK 1232 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444444444444433333333
No 323
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=20.42 E-value=2.9e+02 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 209 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nE 209 (318)
|+|+++..|--.+.+|+|+.+.+|-...+...--.+
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~ 62 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAE 62 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 678889988888999999999998877766443333
No 324
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.28 E-value=5.5e+02 Score=23.65 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 143 LRRALAEKRQRHYRALLGAAE 163 (318)
Q Consensus 143 lR~~l~E~r~r~~r~ll~avE 163 (318)
...+|+..|+|....+=+.++
T Consensus 81 rqEa~eaAR~RmQEE~dakA~ 101 (190)
T PF06936_consen 81 RQEAMEAARRRMQEELDAKAE 101 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666665555544444
No 325
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=20.27 E-value=54 Score=27.42 Aligned_cols=43 Identities=21% Similarity=0.610 Sum_probs=26.0
Q ss_pred cccccccccceeEEeCCCC------cccccchHhhC--------CCCCCCccccCce
Q 021006 270 ACKGCRKRVASVVLLPCRH------LCVCTECDRVV--------QACPLCFNVRDSS 312 (318)
Q Consensus 270 ~C~vC~~~~~~vlLlPC~H------lclC~~C~~~l--------~~CPvCr~~i~~~ 312 (318)
.|--|.+.-.+--|.|=++ ..+|..|-..+ ..||.|+++.+-.
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
Confidence 3444555544455555443 34677775443 3799999998764
No 326
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.14 E-value=9.1e+02 Score=24.51 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 021006 207 AQEATAASLQAQLQQAIMS 225 (318)
Q Consensus 207 ~nEa~A~~Lr~~Lqqal~q 225 (318)
+.|+....+..++...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 87 ELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444445556666665554
No 327
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=20.09 E-value=1.2e+03 Score=25.98 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=65.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 137 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 216 (318)
Q Consensus 137 ~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr 216 (318)
+.|++.|+-.|..+.+ |+-.|.+-|| +.--+|-+|+..|++....+..+++-...+..|...-.....-.+..++.|+
T Consensus 321 r~hi~~lkesl~~ke~-~~~~Lqsdve-~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQ-EAEMLQSDVE-ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888877776654 6666666666 4466788999999999999999998888888888888888888888888888
Q ss_pred HHHHH
Q 021006 217 AQLQQ 221 (318)
Q Consensus 217 ~~Lqq 221 (318)
..++-
T Consensus 399 ~kie~ 403 (775)
T PF10174_consen 399 KKIEN 403 (775)
T ss_pred HHHHH
Confidence 87544
No 328
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.06 E-value=3.5e+02 Score=23.56 Aligned_cols=55 Identities=29% Similarity=0.395 Sum_probs=34.2
Q ss_pred hhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 120 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 191 (318)
Q Consensus 120 ~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErl 191 (318)
-+.++++-++..|.-| -+-.++|...+..+- .-+..||+ +|+.+.+.|..||+|+
T Consensus 77 ~l~a~~~e~qsli~~y-E~~~~kLe~e~~~Kd-------------sei~~Lr~---~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTY-EIVVKKLEAELRAKD-------------SEIDRLRE---KLDELNRANKSLEKRL 131 (131)
T ss_pred ccccchHHHHHHHHHH-HHHHHHHHHHHHHHH-------------HHHHHHHH---HHHHHHHHHHHhhccC
Confidence 3566777666666544 334555666655543 22345776 6777788888888874
No 329
>PF13514 AAA_27: AAA domain
Probab=20.01 E-value=1.3e+03 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021006 125 IKRQRDELDQFLQAQGEQLRRALAEKR 151 (318)
Q Consensus 125 l~~q~~EiD~~i~~q~ErlR~~l~E~r 151 (318)
+.....+++.+-+ ..+.|...+..-.
T Consensus 738 l~~~~~~~~~~~~-ri~~~~~~~~~f~ 763 (1111)
T PF13514_consen 738 LREALAEIRELRR-RIEQMEADLAAFE 763 (1111)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3334444444433 4444444444443
Done!