Query 021006
Match_columns 318
No_of_seqs 246 out of 1102
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.3 4.7E-13 1.6E-17 100.7 4.4 50 268-317 15-64 (68)
2 2vje_B MDM4 protein; proto-onc 99.3 5.1E-13 1.7E-17 98.7 2.1 51 268-318 7-63 (63)
3 2yho_A E3 ubiquitin-protein li 99.2 3.9E-12 1.3E-16 98.1 4.0 51 268-318 18-68 (79)
4 2vje_A E3 ubiquitin-protein li 99.2 1.3E-12 4.5E-17 96.8 1.3 52 267-318 7-64 (64)
5 4ic3_A E3 ubiquitin-protein li 99.2 4.3E-12 1.5E-16 96.2 3.9 51 268-318 24-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.2 4E-12 1.4E-16 96.3 1.4 51 268-318 25-75 (75)
7 3t6p_A Baculoviral IAP repeat- 98.9 4.5E-10 1.5E-14 108.5 3.9 51 268-318 295-345 (345)
8 4ayc_A E3 ubiquitin-protein li 98.3 5.1E-06 1.7E-10 69.3 11.7 44 269-313 54-101 (138)
9 1chc_A Equine herpes virus-1 r 98.1 1.4E-06 4.7E-11 63.5 3.4 48 268-316 5-57 (68)
10 2d8t_A Dactylidin, ring finger 98.0 2.1E-06 7.1E-11 63.5 3.1 43 268-311 15-61 (71)
11 2ysl_A Tripartite motif-contai 98.0 3.7E-06 1.3E-10 61.9 4.1 44 267-311 19-69 (73)
12 2ecn_A Ring finger protein 141 98.0 7.8E-07 2.7E-11 65.3 -0.0 47 268-316 15-65 (70)
13 2xeu_A Ring finger protein 4; 97.9 3.3E-06 1.1E-10 60.2 2.5 49 268-317 3-64 (64)
14 2ecm_A Ring finger and CHY zin 97.9 4.9E-06 1.7E-10 58.0 3.0 43 268-311 5-55 (55)
15 2y1n_A E3 ubiquitin-protein li 97.9 6.6E-06 2.3E-10 80.8 4.2 49 268-317 332-385 (389)
16 2csy_A Zinc finger protein 183 97.9 1.3E-05 4.5E-10 60.5 4.6 45 268-313 15-63 (81)
17 2ct2_A Tripartite motif protei 97.8 6E-06 2.1E-10 62.6 2.4 43 268-311 15-68 (88)
18 2ecw_A Tripartite motif-contai 97.8 9.1E-06 3.1E-10 60.8 3.2 43 268-311 19-71 (85)
19 2ecv_A Tripartite motif-contai 97.8 7.7E-06 2.6E-10 61.2 2.7 43 268-311 19-71 (85)
20 2egp_A Tripartite motif-contai 97.8 6.7E-06 2.3E-10 61.3 1.8 43 268-311 12-65 (79)
21 3ng2_A RNF4, snurf, ring finge 97.8 5.3E-06 1.8E-10 60.6 1.1 43 268-311 10-63 (71)
22 2ea6_A Ring finger protein 4; 97.7 9.2E-06 3.2E-10 58.7 1.9 43 268-311 15-68 (69)
23 2kiz_A E3 ubiquitin-protein li 97.7 1.5E-05 5.3E-10 58.1 2.9 45 268-313 14-65 (69)
24 2ect_A Ring finger protein 126 97.7 1.7E-05 5.9E-10 59.2 3.2 43 268-311 15-64 (78)
25 1iym_A EL5; ring-H2 finger, ub 97.7 2.6E-05 8.9E-10 54.3 3.4 42 268-310 5-54 (55)
26 1x4j_A Ring finger protein 38; 97.7 2.7E-05 9.1E-10 57.9 3.5 43 268-311 23-72 (75)
27 1bor_A Transcription factor PM 97.7 1.1E-05 3.8E-10 57.4 1.2 43 268-311 6-49 (56)
28 2ecy_A TNF receptor-associated 97.6 2.7E-05 9.3E-10 56.5 3.1 44 267-311 14-62 (66)
29 2djb_A Polycomb group ring fin 97.6 2.9E-05 1E-09 57.4 3.1 44 268-312 15-63 (72)
30 1g25_A CDK-activating kinase a 97.6 1.6E-05 5.4E-10 57.6 1.5 43 268-311 3-55 (65)
31 2l0b_A E3 ubiquitin-protein li 97.6 2.3E-05 7.9E-10 60.9 2.5 44 267-311 39-89 (91)
32 3fl2_A E3 ubiquitin-protein li 97.6 2.8E-05 9.7E-10 63.3 2.9 43 268-311 52-99 (124)
33 2ep4_A Ring finger protein 24; 97.6 3E-05 1E-09 57.3 2.4 46 268-314 15-67 (74)
34 1jm7_A BRCA1, breast cancer ty 97.5 1.7E-05 5.8E-10 62.8 0.7 43 268-311 21-70 (112)
35 3l11_A E3 ubiquitin-protein li 97.5 3.2E-05 1.1E-09 62.1 2.2 43 268-311 15-62 (115)
36 2yur_A Retinoblastoma-binding 97.5 6.4E-05 2.2E-09 56.0 3.4 42 268-310 15-63 (74)
37 3lrq_A E3 ubiquitin-protein li 97.5 3.5E-05 1.2E-09 60.8 1.9 43 268-311 22-70 (100)
38 3ztg_A E3 ubiquitin-protein li 97.5 6.5E-05 2.2E-09 57.7 3.3 41 268-309 13-60 (92)
39 1e4u_A Transcriptional repress 97.5 1.6E-05 5.6E-10 60.9 -0.2 45 268-313 11-64 (78)
40 2ckl_A Polycomb group ring fin 97.4 6E-05 2E-09 59.9 2.7 43 268-311 15-62 (108)
41 1z6u_A NP95-like ring finger p 97.4 6.1E-05 2.1E-09 64.1 2.8 44 268-312 78-126 (150)
42 2y43_A E3 ubiquitin-protein li 97.4 7.2E-05 2.5E-09 58.4 2.9 43 268-311 22-69 (99)
43 2ecj_A Tripartite motif-contai 97.4 7.4E-05 2.5E-09 52.3 2.5 37 268-305 15-58 (58)
44 2ysj_A Tripartite motif-contai 97.4 8.1E-05 2.8E-09 53.4 2.6 37 268-305 20-63 (63)
45 2ckl_B Ubiquitin ligase protei 97.4 8.7E-05 3E-09 63.3 3.2 42 268-310 54-101 (165)
46 2f42_A STIP1 homology and U-bo 97.3 0.00076 2.6E-08 59.6 8.7 44 267-311 105-153 (179)
47 1t1h_A Gspef-atpub14, armadill 97.3 0.00013 4.4E-09 54.4 3.0 44 267-311 7-55 (78)
48 1jm7_B BARD1, BRCA1-associated 97.3 7.1E-05 2.4E-09 60.5 1.7 42 268-310 22-66 (117)
49 3hct_A TNF receptor-associated 97.2 0.00012 4.3E-09 59.1 2.5 44 267-311 17-65 (118)
50 1v87_A Deltex protein 2; ring- 97.2 8.5E-05 2.9E-09 59.3 1.2 41 269-310 26-93 (114)
51 1rmd_A RAG1; V(D)J recombinati 97.1 0.00026 8.9E-09 56.8 2.9 43 268-311 23-70 (116)
52 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00028 9.6E-09 56.7 2.8 51 266-317 70-133 (133)
53 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00025 8.4E-09 57.0 2.1 43 268-311 7-60 (133)
54 2ecl_A Ring-box protein 2; RNF 96.8 0.00063 2.1E-08 51.7 2.8 41 270-311 28-76 (81)
55 3knv_A TNF receptor-associated 96.6 0.00031 1E-08 59.2 -0.4 42 267-309 30-76 (141)
56 2c2l_A CHIP, carboxy terminus 96.5 0.0016 5.4E-08 58.5 3.7 44 267-311 207-255 (281)
57 3hcs_A TNF receptor-associated 96.3 0.0019 6.5E-08 55.0 3.2 44 267-311 17-65 (170)
58 2kre_A Ubiquitin conjugation f 96.2 0.0068 2.3E-07 48.2 5.7 45 266-311 27-75 (100)
59 2kr4_A Ubiquitin conjugation f 96.1 0.0049 1.7E-07 47.3 4.2 44 267-311 13-60 (85)
60 3dpl_R Ring-box protein 1; ubi 96.0 0.0034 1.2E-07 50.7 3.0 29 280-309 67-99 (106)
61 1wgm_A Ubiquitin conjugation f 96.0 0.0056 1.9E-07 48.5 4.1 45 266-311 20-69 (98)
62 3vk6_A E3 ubiquitin-protein li 95.5 0.013 4.4E-07 47.5 4.2 45 270-315 3-53 (101)
63 4a0k_B E3 ubiquitin-protein li 95.1 0.0038 1.3E-07 51.6 0.0 29 280-309 78-110 (117)
64 2d8s_A Cellular modulator of i 94.9 0.023 7.7E-07 43.6 4.0 43 268-311 15-70 (80)
65 1wim_A KIAA0161 protein; ring 93.9 0.022 7.6E-07 43.9 1.9 40 268-308 5-61 (94)
66 2v71_A Nuclear distribution pr 93.7 1.8 6.1E-05 38.5 14.1 74 137-222 23-100 (189)
67 2yu4_A E3 SUMO-protein ligase 93.6 0.033 1.1E-06 43.2 2.4 40 268-308 7-59 (94)
68 3htk_C E3 SUMO-protein ligase 90.9 0.12 4E-06 48.4 2.9 44 266-310 179-231 (267)
69 2oqq_A Transcription factor HY 89.8 1.1 3.9E-05 30.6 6.3 34 173-206 8-41 (42)
70 3oja_B Anopheles plasmodium-re 87.9 14 0.00048 36.4 15.6 67 157-223 505-571 (597)
71 3oja_B Anopheles plasmodium-re 86.9 11 0.00039 37.0 14.3 71 155-225 507-580 (597)
72 4etp_A Kinesin-like protein KA 85.1 2.9 9.8E-05 40.8 8.7 57 168-224 3-59 (403)
73 1vyx_A ORF K3, K3RING; zinc-bi 84.3 0.52 1.8E-05 33.9 2.3 43 268-310 6-58 (60)
74 2wvr_A Geminin; DNA replicatio 82.3 7.6 0.00026 34.9 9.4 63 140-217 95-157 (209)
75 3mq9_A Bone marrow stromal ant 82.0 11 0.00038 36.2 11.5 22 131-152 397-418 (471)
76 1ci6_A Transcription factor AT 81.6 5.1 0.00017 29.2 6.8 37 170-206 25-61 (63)
77 1wlq_A Geminin; coiled-coil; 2 79.0 18 0.00063 28.1 9.4 59 141-214 19-77 (83)
78 1dip_A Delta-sleep-inducing pe 79.0 1.3 4.4E-05 33.9 2.8 29 175-203 15-43 (78)
79 3s9g_A Protein hexim1; cyclin 78.9 20 0.00067 28.9 9.8 30 167-203 64-93 (104)
80 2bay_A PRE-mRNA splicing facto 78.6 0.94 3.2E-05 32.6 1.9 43 268-311 3-50 (61)
81 1wle_A Seryl-tRNA synthetase; 78.3 18 0.00061 36.3 11.8 30 197-226 124-153 (501)
82 3oja_A Leucine-rich immune mol 77.8 32 0.0011 33.1 13.2 57 170-226 423-479 (487)
83 2jee_A YIIU; FTSZ, septum, coi 77.5 16 0.00055 28.2 8.7 26 181-206 47-72 (81)
84 2zxx_A Geminin; coiled-coil, c 77.3 13 0.00045 28.6 8.1 58 141-215 15-74 (79)
85 1x4t_A Hypothetical protein LO 75.3 11 0.00037 29.9 7.3 41 155-195 30-79 (92)
86 3na7_A HP0958; flagellar bioge 74.8 47 0.0016 29.8 13.0 51 170-220 92-142 (256)
87 1uii_A Geminin; human, DNA rep 74.3 26 0.0009 27.2 9.1 45 140-187 26-72 (83)
88 3iv1_A Tumor susceptibility ge 73.5 28 0.00097 26.7 10.5 46 157-202 3-59 (78)
89 2ko5_A Ring finger protein Z; 73.5 0.77 2.7E-05 36.8 0.3 46 268-315 28-77 (99)
90 3nmd_A CGMP dependent protein 71.0 12 0.0004 28.5 6.3 34 170-203 35-68 (72)
91 2q6q_A Spindle POLE BODY compo 70.7 29 0.001 26.1 8.3 50 167-216 9-58 (74)
92 1jnm_A Proto-oncogene C-JUN; B 69.4 22 0.00077 25.4 7.4 24 184-207 24-47 (62)
93 2v66_B Nuclear distribution pr 67.5 15 0.00052 29.9 6.8 44 181-224 2-49 (111)
94 3mq7_A Bone marrow stromal ant 67.4 51 0.0018 27.1 12.7 83 117-201 13-104 (121)
95 3ol1_A Vimentin; structural ge 66.9 49 0.0017 26.7 13.1 88 122-216 19-114 (119)
96 1kd8_A GABH AIV, GCN4 acid bas 64.8 6.6 0.00022 26.0 3.3 28 169-196 2-29 (36)
97 1t6f_A Geminin; coiled-coil, c 63.9 9.3 0.00032 25.3 3.9 21 169-189 15-35 (37)
98 4egx_A Kinesin-like protein KI 63.7 23 0.00077 30.8 7.7 31 162-195 6-36 (184)
99 1kd8_B GABH BLL, GCN4 acid bas 63.5 9.2 0.00031 25.3 3.8 27 169-195 2-28 (36)
100 3vkg_A Dynein heavy chain, cyt 62.7 80 0.0027 38.7 14.2 50 170-219 2023-2072(3245)
101 1a93_B MAX protein, coiled coi 59.6 12 0.00041 24.5 3.8 23 172-194 11-33 (34)
102 2v66_B Nuclear distribution pr 58.5 73 0.0025 25.9 14.2 88 135-227 7-94 (111)
103 1ez3_A Syntaxin-1A; three heli 54.7 71 0.0024 25.0 8.7 86 136-224 17-109 (127)
104 1jnm_A Proto-oncogene C-JUN; B 54.7 35 0.0012 24.3 6.2 38 167-204 21-58 (62)
105 3hnw_A Uncharacterized protein 54.2 94 0.0032 25.8 10.6 72 118-199 63-134 (138)
106 1t3j_A Mitofusin 1; coiled coi 53.7 56 0.0019 25.9 7.6 43 169-222 48-90 (96)
107 2i1j_A Moesin; FERM, coiled-co 53.5 14 0.00048 37.5 5.2 43 180-222 333-375 (575)
108 1uo4_A General control protein 49.4 23 0.00079 23.1 3.9 27 169-195 2-28 (34)
109 3a7p_A Autophagy protein 16; c 49.3 1.2E+02 0.0043 25.8 11.0 26 174-199 102-127 (152)
110 2dfs_A Myosin-5A; myosin-V, in 48.5 1.8E+02 0.0062 31.7 13.2 14 181-194 1004-1017(1080)
111 3u06_A Protein claret segregat 48.2 66 0.0023 31.3 8.9 53 171-223 6-58 (412)
112 3nmd_A CGMP dependent protein 47.9 46 0.0016 25.2 6.0 15 168-182 47-61 (72)
113 1hjb_A Ccaat/enhancer binding 47.8 95 0.0032 24.0 9.4 28 176-203 44-71 (87)
114 3m91_A Proteasome-associated A 46.9 72 0.0025 22.4 6.6 34 167-200 8-41 (51)
115 2wt7_A Proto-oncogene protein 46.3 78 0.0027 22.6 10.0 36 170-205 25-60 (63)
116 1a92_A Delta antigen; leucine 46.0 23 0.00079 24.9 3.7 23 167-189 13-35 (50)
117 3ghg_A Fibrinogen alpha chain; 45.7 2.3E+02 0.0077 28.9 12.3 36 186-221 114-149 (562)
118 2fiy_A Protein FDHE homolog; F 45.6 9.7 0.00033 35.9 2.4 42 268-309 182-232 (309)
119 2l5g_B Putative uncharacterize 45.5 59 0.002 22.1 5.6 30 169-198 10-39 (42)
120 2akf_A Coronin-1A; coiled coil 45.5 45 0.0015 21.1 4.6 28 173-200 4-31 (32)
121 3c3g_A Alpha/beta peptide with 45.4 29 0.00098 22.5 3.8 27 169-195 1-27 (33)
122 3ni0_A Bone marrow stromal ant 45.2 1.1E+02 0.0039 24.2 13.0 59 168-226 32-90 (99)
123 2wq1_A General control protein 44.6 30 0.001 22.4 3.8 27 169-195 1-27 (33)
124 3k1l_B Fancl; UBC, ring, RWD, 44.5 4.2 0.00014 39.7 -0.3 44 269-313 309-375 (381)
125 3m48_A General control protein 43.9 26 0.0009 22.7 3.5 27 169-195 1-27 (33)
126 3i00_A HIP-I, huntingtin-inter 43.8 1.3E+02 0.0045 24.5 11.2 22 129-151 14-35 (120)
127 3s9g_A Protein hexim1; cyclin 43.8 1.2E+02 0.0042 24.2 9.7 67 134-203 18-86 (104)
128 1ci6_A Transcription factor AT 42.3 92 0.0032 22.3 8.2 49 165-219 12-60 (63)
129 1t2k_D Cyclic-AMP-dependent tr 42.1 88 0.003 22.0 9.7 35 170-204 24-58 (61)
130 2hy6_A General control protein 42.1 35 0.0012 22.2 3.9 27 169-195 2-28 (34)
131 1x79_B RAB GTPase binding effe 42.1 1.4E+02 0.0047 24.3 9.2 52 171-222 16-71 (112)
132 1deq_A Fibrinogen (alpha chain 41.5 2.6E+02 0.0089 27.3 12.2 73 125-198 79-164 (390)
133 2jun_A Midline-1; B-BOX, TRIM, 41.2 7.3 0.00025 29.7 0.6 29 269-298 4-35 (101)
134 2oxj_A Hybrid alpha/beta pepti 40.3 41 0.0014 21.9 4.0 27 169-195 2-28 (34)
135 2bni_A General control protein 39.9 40 0.0014 22.0 3.9 27 169-195 2-28 (34)
136 4ani_A Protein GRPE; chaperone 39.8 83 0.0028 28.2 7.5 21 130-151 59-79 (213)
137 2b5u_A Colicin E3; high resolu 39.1 3.2E+02 0.011 27.7 13.4 111 110-223 281-415 (551)
138 1fmh_A General control protein 38.9 58 0.002 20.6 4.4 26 173-198 6-31 (33)
139 3o0z_A RHO-associated protein 38.7 1.9E+02 0.0066 25.0 15.9 33 120-152 6-41 (168)
140 3c3f_A Alpha/beta peptide with 38.6 42 0.0014 21.9 3.8 27 169-195 2-28 (34)
141 1s94_A S-syntaxin; three helix 38.5 1.7E+02 0.0059 24.4 9.2 86 136-224 48-140 (180)
142 2dfs_A Myosin-5A; myosin-V, in 38.2 1.8E+02 0.0062 31.7 11.2 38 173-210 975-1012(1080)
143 3ghg_A Fibrinogen alpha chain; 38.0 1.1E+02 0.0039 31.1 8.8 71 124-196 75-145 (562)
144 1deq_A Fibrinogen (alpha chain 37.9 1.5E+02 0.0051 29.0 9.3 86 106-194 29-125 (390)
145 2dgc_A Protein (GCN4); basic d 37.2 1.1E+02 0.0039 21.9 6.8 19 183-201 31-49 (63)
146 3tnu_B Keratin, type II cytosk 36.4 1.7E+02 0.0057 23.6 11.0 26 174-199 74-99 (129)
147 3axj_A GM27569P, translin; tra 35.0 1.1E+02 0.0038 27.7 7.6 26 173-198 69-94 (249)
148 1weo_A Cellulose synthase, cat 34.8 29 0.001 27.4 3.2 45 266-310 14-69 (93)
149 3vem_A Helicase protein MOM1; 34.2 1.9E+02 0.0065 23.6 10.3 31 112-142 28-58 (115)
150 2r2v_A GCN4 leucine zipper; co 34.1 54 0.0019 21.4 3.8 27 169-195 2-28 (34)
151 2q2f_A Selenoprotein S; anti-p 33.8 1.7E+02 0.0058 22.9 8.0 40 132-177 39-78 (89)
152 3qne_A Seryl-tRNA synthetase, 33.5 2.5E+02 0.0084 28.0 10.5 77 131-225 31-107 (485)
153 3ipq_A Oxysterols receptor LXR 32.9 14 0.00049 33.4 1.3 17 125-141 43-59 (283)
154 2p4v_A Transcription elongatio 32.7 88 0.003 26.3 6.2 16 206-221 56-71 (158)
155 1z0k_B FYVE-finger-containing 32.2 79 0.0027 23.6 5.0 42 135-180 24-65 (69)
156 1d7m_A Cortexillin I; coiled-c 32.0 1.9E+02 0.0064 22.8 10.1 28 169-198 47-74 (101)
157 2spc_A Spectrin; cytoskeleton; 31.9 1.6E+02 0.0054 21.9 10.3 33 172-204 72-104 (107)
158 1yzm_A FYVE-finger-containing 31.4 1E+02 0.0034 21.8 5.2 42 136-181 7-48 (51)
159 3cvf_A Homer-3, homer protein 31.4 1.7E+02 0.0059 22.2 7.5 26 177-202 15-40 (79)
160 1gd2_E Transcription factor PA 29.7 1.7E+02 0.0058 21.6 8.5 24 176-199 44-67 (70)
161 3tnu_A Keratin, type I cytoske 29.1 2.3E+02 0.0077 22.9 9.7 27 173-199 75-101 (131)
162 1z0j_B FYVE-finger-containing 29.0 1.1E+02 0.0038 22.2 5.2 43 134-180 12-54 (59)
163 1i84_S Smooth muscle myosin he 28.8 4.1E+02 0.014 28.9 12.1 27 172-198 910-936 (1184)
164 1yuz_A Nigerythrin; rubrythrin 28.3 16 0.00053 32.2 0.7 15 300-314 187-201 (202)
165 2ct0_A Non-SMC element 1 homol 27.8 37 0.0013 25.3 2.6 43 269-312 16-65 (74)
166 1yk4_A Rubredoxin, RD; electro 27.8 26 0.0009 24.5 1.7 15 301-315 37-51 (52)
167 1e8j_A Rubredoxin; iron-sulfur 27.8 24 0.00082 24.8 1.4 14 301-314 38-51 (52)
168 1zxa_A CGMP-dependent protein 27.2 90 0.0031 23.2 4.6 18 163-180 13-30 (67)
169 1t2k_D Cyclic-AMP-dependent tr 26.9 1.7E+02 0.0056 20.6 8.5 35 183-217 23-57 (61)
170 1hjb_A Ccaat/enhancer binding 26.9 2.2E+02 0.0074 21.9 7.2 40 181-220 35-74 (87)
171 1m1j_B Fibrinogen beta chain; 26.9 4.8E+02 0.016 25.9 11.9 27 168-194 128-158 (464)
172 2v3b_B Rubredoxin 2, rubredoxi 26.6 26 0.00089 24.8 1.5 15 301-315 38-52 (55)
173 4rxn_A Rubredoxin; electron tr 26.6 24 0.0008 25.1 1.2 15 301-315 38-52 (54)
174 2f23_A Anti-cleavage anti-GREA 26.0 96 0.0033 25.8 5.2 13 209-221 59-71 (156)
175 2kn9_A Rubredoxin; metalloprot 25.9 31 0.0011 26.5 1.9 15 301-315 62-76 (81)
176 3vem_A Helicase protein MOM1; 24.7 2.9E+02 0.0098 22.6 9.1 40 136-183 37-76 (115)
177 1vcs_A Vesicle transport throu 24.6 2.5E+02 0.0084 21.8 7.4 50 176-225 39-96 (102)
178 1gk4_A Vimentin; intermediate 24.4 2.2E+02 0.0077 21.2 8.4 40 160-199 11-50 (84)
179 2wt7_A Proto-oncogene protein 24.3 1.9E+02 0.0066 20.5 8.8 37 183-219 24-60 (63)
180 2dq0_A Seryl-tRNA synthetase; 24.1 2.6E+02 0.009 27.3 8.7 86 118-207 11-101 (455)
181 1grj_A GREA protein; transcrip 23.9 1.5E+02 0.0051 24.8 6.0 16 207-222 57-72 (158)
182 2i1j_A Moesin; FERM, coiled-co 23.9 60 0.0021 32.8 4.2 50 163-212 337-386 (575)
183 3cve_A Homer protein homolog 1 23.6 2.3E+02 0.008 21.2 8.3 27 176-202 8-34 (72)
184 6rxn_A Rubredoxin; electron tr 23.4 30 0.001 23.8 1.2 14 301-314 32-45 (46)
185 3na7_A HP0958; flagellar bioge 23.3 3.9E+02 0.013 23.6 13.7 44 154-198 91-134 (256)
186 3pwf_A Rubrerythrin; non heme 22.9 3.4E+02 0.012 22.8 12.7 17 299-315 153-169 (170)
187 3v1a_A Computational design, M 21.6 1.4E+02 0.0047 20.8 4.4 40 136-179 6-45 (48)
188 1dx8_A Rubredoxin; electron tr 21.6 33 0.0011 25.5 1.2 15 301-315 42-56 (70)
189 3ghg_B Fibrinogen beta chain; 20.8 3.4E+02 0.012 27.1 8.7 102 118-224 79-191 (461)
190 1gu4_A CAAT/enhancer binding p 20.8 2.7E+02 0.0093 20.9 8.9 27 176-202 44-70 (78)
191 3bas_A Myosin heavy chain, str 20.6 2.8E+02 0.0096 21.0 9.0 40 176-215 29-68 (89)
192 2wg5_A General control protein 20.4 95 0.0033 24.5 3.9 8 270-277 78-85 (109)
193 3kin_B Kinesin heavy chain; mo 20.1 1.4E+02 0.0049 23.8 4.9 21 182-202 96-116 (117)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.7e-13 Score=100.67 Aligned_cols=50 Identities=34% Similarity=0.806 Sum_probs=47.9
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhCCCCCCCccccCceEEEee
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFL 317 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l~~CPvCr~~i~~~v~V~~ 317 (318)
...|+||+++.++++|+||||+++|..|...+..||+||.+|...++||.
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 46899999999999999999999999999999999999999999999986
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.30 E-value=5.1e-13 Score=98.74 Aligned_cols=51 Identities=27% Similarity=0.648 Sum_probs=46.8
Q ss_pred cccccccccccceeEEe--CCCCcccccchHhhCC----CCCCCccccCceEEEeeC
Q 021006 268 GPACKGCRKRVASVVLL--PCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFLS 318 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLl--PC~HlclC~~C~~~l~----~CPvCr~~i~~~v~V~~S 318 (318)
...|+||++++.+.+++ ||||+++|..|+..+. .||+||.+|...++||+|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 46899999999887777 9999999999998876 999999999999999987
No 3
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.24 E-value=3.9e-12 Score=98.14 Aligned_cols=51 Identities=25% Similarity=0.659 Sum_probs=48.5
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 318 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l~~CPvCr~~i~~~v~V~~S 318 (318)
...|+||++...+++|+||||.++|..|...+..||+||.++...+++|++
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 458999999999999999999999999999999999999999999999974
No 4
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.24 E-value=1.3e-12 Score=96.80 Aligned_cols=52 Identities=21% Similarity=0.526 Sum_probs=47.1
Q ss_pred ccccccccccccceeEEe--CCCCcccccchHhhCC----CCCCCccccCceEEEeeC
Q 021006 267 SGPACKGCRKRVASVVLL--PCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFLS 318 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLl--PC~HlclC~~C~~~l~----~CPvCr~~i~~~v~V~~S 318 (318)
....|+||+++..+++|+ ||||+++|..|...+. .||+||.+|...+++|+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 346899999999999988 9999999999988754 699999999999999986
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.23 E-value=4.3e-12 Score=96.19 Aligned_cols=51 Identities=33% Similarity=0.882 Sum_probs=48.1
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 318 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l~~CPvCr~~i~~~v~V~~S 318 (318)
...|.||++...+.+++||||.++|..|...+..||+||.++...++||+|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 468999999999999999999999999999999999999999999999997
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4e-12 Score=96.34 Aligned_cols=51 Identities=35% Similarity=0.915 Sum_probs=48.8
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 318 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l~~CPvCr~~i~~~v~V~~S 318 (318)
...|.||++...+++++||||.++|..|...+..||+||.++...++||+|
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 468999999999999999999999999999999999999999999999997
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.91 E-value=4.5e-10 Score=108.52 Aligned_cols=51 Identities=41% Similarity=0.946 Sum_probs=47.4
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhCCCCCCCccccCceEEEeeC
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 318 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l~~CPvCr~~i~~~v~V~~S 318 (318)
...|.||++...+.+++||||.|+|..|...+..||+||.+|...++||+|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 468999999999999999999999999999999999999999999999997
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.33 E-value=5.1e-06 Score=69.31 Aligned_cols=44 Identities=27% Similarity=0.562 Sum_probs=37.2
Q ss_pred ccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccCceE
Q 021006 269 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 313 (318)
Q Consensus 269 ~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 313 (318)
..|.||++...+.+++||||. +|..|... -..||+||.++....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 369999999999999999996 89999654 358999999987653
No 9
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.12 E-value=1.4e-06 Score=63.51 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=40.2
Q ss_pred cccccccccccce-eEEeCCCCcccccchHhh----CCCCCCCccccCceEEEe
Q 021006 268 GPACKGCRKRVAS-VVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEVF 316 (318)
Q Consensus 268 ~~~C~vC~~~~~~-vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~V~ 316 (318)
...|.+|++.... ++++||+|. +|..|... -..||+||.++...+..+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 4589999998877 688999999 99999754 468999999998876654
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=2.1e-06 Score=63.53 Aligned_cols=43 Identities=30% Similarity=0.701 Sum_probs=37.4
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhC----CCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~~i~~ 311 (318)
...|.||++.....+++||+|. +|..|.... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4689999999999899999999 999997663 589999998764
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=3.7e-06 Score=61.91 Aligned_cols=44 Identities=25% Similarity=0.564 Sum_probs=37.0
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhhC-------CCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l-------~~CPvCr~~i~~ 311 (318)
....|.||++.....+++||+|. +|..|.... ..||+||.++..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 35689999999998888899999 899997652 279999998764
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=7.8e-07 Score=65.32 Aligned_cols=47 Identities=28% Similarity=0.598 Sum_probs=39.7
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhC----CCCCCCccccCceEEEe
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEVF 316 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~V~ 316 (318)
...|.||++.... +++||+|. +|..|.... ..||+||.++.....+|
T Consensus 15 ~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 15 EEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 4689999999888 88899999 999998753 58999999998766554
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.94 E-value=3.3e-06 Score=60.22 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=37.7
Q ss_pred cccccccccccce-------eEEeCCCCcccccchHhh----CCCCCCCccccC--ceEEEee
Q 021006 268 GPACKGCRKRVAS-------VVLLPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 317 (318)
Q Consensus 268 ~~~C~vC~~~~~~-------vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~--~~v~V~~ 317 (318)
...|.||++.... ++++||+|. +|..|... -..||+||.++. ....+|+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 3579999986544 378899999 89999754 459999999887 4555554
No 14
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.93 E-value=4.9e-06 Score=57.98 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=34.6
Q ss_pred cccccccccccce----eEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVAS----VVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~----vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
...|.||++.-.. ++++||+|. +|..|... -..||+||.++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999987543 888999997 89999755 2699999998753
No 15
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.88 E-value=6.6e-06 Score=80.78 Aligned_cols=49 Identities=31% Similarity=0.629 Sum_probs=42.2
Q ss_pred cccccccccccceeEEeCCCCcccccchHh-----hCCCCCCCccccCceEEEee
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDR-----VVQACPLCFNVRDSSVEVFL 317 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~-----~l~~CPvCr~~i~~~v~V~~ 317 (318)
...|.||++...+.+++||||. +|..|.. ....||+||.++.....|++
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 3689999999999999999999 5999965 35799999999998876653
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=1.3e-05 Score=60.48 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=37.6
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccCceE
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 313 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 313 (318)
...|.||++.....+++||+|. +|..|... ...||+|+.++...+
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 4589999999888889999998 79999654 458999999987433
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=6e-06 Score=62.63 Aligned_cols=43 Identities=26% Similarity=0.655 Sum_probs=35.4
Q ss_pred cccccccccccce----eEEeCCCCcccccchHhhC-------CCCCCCccccCc
Q 021006 268 GPACKGCRKRVAS----VVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~----vlLlPC~HlclC~~C~~~l-------~~CPvCr~~i~~ 311 (318)
...|.||++.... .+++||+|. +|..|.... ..||+||.++..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4689999998777 888899997 899996542 589999997643
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.82 E-value=9.1e-06 Score=60.83 Aligned_cols=43 Identities=23% Similarity=0.506 Sum_probs=36.5
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh----------CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----------l~~CPvCr~~i~~ 311 (318)
...|.||++.....+++||+|. +|..|... ...||+|+..+..
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4689999999888888999998 89999654 4589999998764
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=7.7e-06 Score=61.25 Aligned_cols=43 Identities=23% Similarity=0.576 Sum_probs=36.4
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh----------CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----------l~~CPvCr~~i~~ 311 (318)
...|.||++.....+++||+|. +|..|... ...||+|+..+..
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4689999999888778899998 89999654 4689999998764
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.78 E-value=6.7e-06 Score=61.26 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=35.8
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh-----------CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----------VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----------l~~CPvCr~~i~~ 311 (318)
...|.||++.....+.+||||. +|..|... ...||+||.++..
T Consensus 12 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4689999998888777899998 89999764 3489999998753
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.77 E-value=5.3e-06 Score=60.61 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=34.4
Q ss_pred cccccccccccce-------eEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVAS-------VVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~-------vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
...|.||++.... ++++||+|. +|..|... -..||+||.++..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4589999987544 388899998 89999744 4699999998764
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=9.2e-06 Score=58.72 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=34.4
Q ss_pred ccccccccccccee-------EEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~v-------lLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
...|.||++..... +++||+|. +|..|... -..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 46899999875543 88899996 89999754 3589999998763
No 23
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.72 E-value=1.5e-05 Score=58.12 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=35.5
Q ss_pred cccccccccc---cceeEEeCCCCcccccchHhh----CCCCCCCccccCceE
Q 021006 268 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 313 (318)
Q Consensus 268 ~~~C~vC~~~---~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 313 (318)
...|.||++. ...++.+||+|. +|..|... -..||+||..+...+
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 4579999654 356788999999 89999754 368999999987654
No 24
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.72 E-value=1.7e-05 Score=59.20 Aligned_cols=43 Identities=33% Similarity=0.692 Sum_probs=34.0
Q ss_pred cccccccccc---cceeEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 268 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~---~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
...|.||++. +..+.++||+|. +|..|... -..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCC
Confidence 4689999654 456777899997 89999653 3689999998865
No 25
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.67 E-value=2.6e-05 Score=54.30 Aligned_cols=42 Identities=31% Similarity=0.661 Sum_probs=33.6
Q ss_pred cccccccccccce---eEEeC-CCCcccccchHhh----CCCCCCCccccC
Q 021006 268 GPACKGCRKRVAS---VVLLP-CRHLCVCTECDRV----VQACPLCFNVRD 310 (318)
Q Consensus 268 ~~~C~vC~~~~~~---vlLlP-C~HlclC~~C~~~----l~~CPvCr~~i~ 310 (318)
...|.||++.-.. ++.+| |+|. +|..|... -..||+||..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4579999987555 77777 9998 89999765 358999998764
No 26
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=2.7e-05 Score=57.94 Aligned_cols=43 Identities=23% Similarity=0.539 Sum_probs=34.3
Q ss_pred cccccccccc---cceeEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 268 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~---~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
...|.||++. ...++.+||+|. +|..|... -..||+||..+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4689999965 345688899998 99999654 3689999998765
No 27
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.65 E-value=1.1e-05 Score=57.43 Aligned_cols=43 Identities=28% Similarity=0.656 Sum_probs=35.9
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh-CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-l~~CPvCr~~i~~ 311 (318)
...|.||++...+.+++||+|. +|..|... ...||+||..+..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 3579999998888888999998 89999754 3589999998763
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=2.7e-05 Score=56.50 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=36.2
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 311 (318)
....|.||++.....+.+||+|. +|..|... ...||+|+.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35689999998887777899999 89999653 3489999998764
No 29
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=2.9e-05 Score=57.39 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=35.9
Q ss_pred cccccccccccceeEEe-CCCCcccccchHhh----CCCCCCCccccCce
Q 021006 268 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDSS 312 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLl-PC~HlclC~~C~~~----l~~CPvCr~~i~~~ 312 (318)
...|.||++...+.+.+ ||+|. +|..|... ...||+||..+...
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 56899999988876665 99998 79999644 46999999988653
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.61 E-value=1.6e-05 Score=57.61 Aligned_cols=43 Identities=21% Similarity=0.625 Sum_probs=32.5
Q ss_pred ccccccccc----ccce-eEEeCCCCcccccchHhhC-----CCCCCCccccCc
Q 021006 268 GPACKGCRK----RVAS-VVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~----~~~~-vlLlPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 311 (318)
...|.||++ ++.. ++++||||. +|..|.... ..||+|+.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 357999999 2322 356799998 899996553 479999998764
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.61 E-value=2.3e-05 Score=60.88 Aligned_cols=44 Identities=23% Similarity=0.560 Sum_probs=34.9
Q ss_pred ccccccccccccce---eEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVAS---VVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~---vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
....|.||++.-.. ++.+||+|. +|..|... -..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 35689999876444 778899997 99999654 3589999998764
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.59 E-value=2.8e-05 Score=63.31 Aligned_cols=43 Identities=28% Similarity=0.563 Sum_probs=36.3
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 311 (318)
...|.||++.-...+.+||||. +|..|... ...||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3589999999888888899998 89999643 2489999998865
No 33
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=3e-05 Score=57.33 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=35.7
Q ss_pred ccccccccccc---ceeEEeCCCCcccccchHhh----CCCCCCCccccCceEE
Q 021006 268 GPACKGCRKRV---ASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVE 314 (318)
Q Consensus 268 ~~~C~vC~~~~---~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~ 314 (318)
...|.||++.. ..+.++||+|. +|..|... -..||+||.++.....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 45899998763 45667799998 89999654 3589999999876543
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.53 E-value=1.7e-05 Score=62.84 Aligned_cols=43 Identities=28% Similarity=0.562 Sum_probs=35.2
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhC-------CCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l-------~~CPvCr~~i~~ 311 (318)
...|.||++.....+.+||||. +|..|.... ..||+|+.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3589999998888777899998 899996541 279999998764
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.51 E-value=3.2e-05 Score=62.11 Aligned_cols=43 Identities=30% Similarity=0.687 Sum_probs=36.1
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhC-----CCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 311 (318)
...|.||++.....+.+||||. +|..|.... ..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4689999999888888899998 899997553 389999998753
No 36
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.48 E-value=6.4e-05 Score=56.01 Aligned_cols=42 Identities=29% Similarity=0.728 Sum_probs=35.1
Q ss_pred cccccccccccceeEEeC-CCCcccccchHhh------CCCCCCCccccC
Q 021006 268 GPACKGCRKRVASVVLLP-CRHLCVCTECDRV------VQACPLCFNVRD 310 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlP-C~HlclC~~C~~~------l~~CPvCr~~i~ 310 (318)
...|.||++...+.+.+| |+|. +|..|... ...||+||.++.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 568999999988888899 9998 89999644 148999999743
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.47 E-value=3.5e-05 Score=60.84 Aligned_cols=43 Identities=26% Similarity=0.497 Sum_probs=36.1
Q ss_pred cccccccccccceeEE-eCCCCcccccchHhh----C-CCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVL-LPCRHLCVCTECDRV----V-QACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlL-lPC~HlclC~~C~~~----l-~~CPvCr~~i~~ 311 (318)
...|.||++.....+. +||||. +|..|... - ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4589999999888888 999999 89999654 2 589999998753
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.47 E-value=6.5e-05 Score=57.71 Aligned_cols=41 Identities=29% Similarity=0.769 Sum_probs=34.8
Q ss_pred cccccccccccceeEEeC-CCCcccccchHhh------CCCCCCCcccc
Q 021006 268 GPACKGCRKRVASVVLLP-CRHLCVCTECDRV------VQACPLCFNVR 309 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlP-C~HlclC~~C~~~------l~~CPvCr~~i 309 (318)
...|.||++.-.+-+.+| |||. +|..|... ...||+||.++
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 468999999888888899 9998 89999643 24899999986
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.45 E-value=1.6e-05 Score=60.95 Aligned_cols=45 Identities=20% Similarity=0.536 Sum_probs=34.7
Q ss_pred ccccccccccc--ceeEEeC--CCCcccccchHhhC-----CCCCCCccccCceE
Q 021006 268 GPACKGCRKRV--ASVVLLP--CRHLCVCTECDRVV-----QACPLCFNVRDSSV 313 (318)
Q Consensus 268 ~~~C~vC~~~~--~~vlLlP--C~HlclC~~C~~~l-----~~CPvCr~~i~~~v 313 (318)
...|.||++.. .++.++| |||. +|..|...+ ..||+||.++....
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 35899999965 3456666 9998 999997664 38999999887543
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.42 E-value=6e-05 Score=59.93 Aligned_cols=43 Identities=21% Similarity=0.465 Sum_probs=36.0
Q ss_pred cccccccccccceeEEe-CCCCcccccchHhhC----CCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLL-PCRHLCVCTECDRVV----QACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLl-PC~HlclC~~C~~~l----~~CPvCr~~i~~ 311 (318)
...|.||++...+.+.+ ||||. +|..|.... ..||+|+..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 46899999988887777 99998 899996542 589999998875
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.41 E-value=6.1e-05 Score=64.14 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=36.5
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhC-----CCCCCCccccCce
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDSS 312 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l-----~~CPvCr~~i~~~ 312 (318)
...|.||++...+.+.+||+|. +|..|.... ..||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3589999999988888999997 899996542 3799999988753
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.40 E-value=7.2e-05 Score=58.43 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=35.5
Q ss_pred cccccccccccceeEEe-CCCCcccccchHhh----CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLl-PC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
...|.||++.-.+.+.+ ||||. +|..|... -..||+|+..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45899999988877776 99998 89999654 3589999998874
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=7.4e-05 Score=52.28 Aligned_cols=37 Identities=27% Similarity=0.758 Sum_probs=31.3
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhC-------CCCCCC
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLC 305 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l-------~~CPvC 305 (318)
...|.||++.....+++||+|. +|..|.... ..||+|
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 4689999999888888999999 899996542 589998
No 44
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=8.1e-05 Score=53.36 Aligned_cols=37 Identities=30% Similarity=0.696 Sum_probs=31.3
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh-------CCCCCCC
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-------VQACPLC 305 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-------l~~CPvC 305 (318)
...|.||++.....+++||+|. +|..|... ...||+|
T Consensus 20 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 4689999999888888899999 89999643 2389998
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.37 E-value=8.7e-05 Score=63.26 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=34.7
Q ss_pred cccccccccccceeEEe-CCCCcccccchHhh-----CCCCCCCccccC
Q 021006 268 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV-----VQACPLCFNVRD 310 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLl-PC~HlclC~~C~~~-----l~~CPvCr~~i~ 310 (318)
...|.||++...+.+.+ ||||. +|..|... -..||+|+.++.
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 45899999988877766 99998 89999654 347999999875
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.31 E-value=0.00076 Score=59.61 Aligned_cols=44 Identities=7% Similarity=-0.188 Sum_probs=35.5
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 311 (318)
....|.+|++-..+-|++||||. +|..|-.. -..||+|+.++..
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 35689999999888888899997 89999433 1369999998764
No 47
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.28 E-value=0.00013 Score=54.35 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=36.3
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 311 (318)
....|.+|++--.+-+.+||||. +|..|... ...||+|+.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35689999998888888899998 89999643 3579999998864
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.28 E-value=7.1e-05 Score=60.49 Aligned_cols=42 Identities=26% Similarity=0.698 Sum_probs=35.9
Q ss_pred cccccccccccceeEEe-CCCCcccccchHhhC--CCCCCCccccC
Q 021006 268 GPACKGCRKRVASVVLL-PCRHLCVCTECDRVV--QACPLCFNVRD 310 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLl-PC~HlclC~~C~~~l--~~CPvCr~~i~ 310 (318)
...|.||++.....+++ ||||. +|..|.... ..||+|+.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 46899999988888888 99998 899997664 57999999875
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.22 E-value=0.00012 Score=59.13 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=36.9
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 311 (318)
....|.||++....-+.+||||. +|..|... ...||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 35689999998888888999998 89999654 2499999998875
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.20 E-value=8.5e-05 Score=59.25 Aligned_cols=41 Identities=22% Similarity=0.456 Sum_probs=31.0
Q ss_pred cccccccccc------------------ceeEEeCCCCcccccchHhh---------CCCCCCCccccC
Q 021006 269 PACKGCRKRV------------------ASVVLLPCRHLCVCTECDRV---------VQACPLCFNVRD 310 (318)
Q Consensus 269 ~~C~vC~~~~------------------~~vlLlPC~HlclC~~C~~~---------l~~CPvCr~~i~ 310 (318)
..|.||++.- ..+.++||+|. +|..|... -..||+||..+.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4799997763 23458899997 99999533 348999998764
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.06 E-value=0.00026 Score=56.77 Aligned_cols=43 Identities=28% Similarity=0.520 Sum_probs=36.4
Q ss_pred cccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 311 (318)
...|.||++...+.+.+||||. +|..|... -..||+|+.++..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4689999999988888999999 89999643 3589999998764
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.04 E-value=0.00028 Score=56.66 Aligned_cols=51 Identities=22% Similarity=0.597 Sum_probs=38.8
Q ss_pred cccccccccccccce-------eEEeCCCCcccccchHhh----CCCCCCCccccC--ceEEEee
Q 021006 266 VSGPACKGCRKRVAS-------VVLLPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 317 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~-------vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~--~~v~V~~ 317 (318)
.....|.+|.+.-.. ++.+||+|. +|..|... ...||+||.++. ..+.+|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 345689999986554 378899998 89999653 579999999876 4556654
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.99 E-value=0.00025 Score=57.00 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=34.2
Q ss_pred ccccccccccccee-------EEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~v-------lLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
...|.||++.-..- +++||||. +|..|... -..||+|+..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 46899999865443 88899997 89999754 3589999998774
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.00063 Score=51.74 Aligned_cols=41 Identities=29% Similarity=0.538 Sum_probs=28.6
Q ss_pred cccccccc---cc-eeEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 270 ACKGCRKR---VA-SVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 270 ~C~vC~~~---~~-~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
.|.+|.+. .. .+++.+|+|. ++..|... -..||+||.++..
T Consensus 28 ~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 28 ACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred cCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 57777653 22 3444469998 89999654 3589999998653
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.56 E-value=0.00031 Score=59.24 Aligned_cols=42 Identities=24% Similarity=0.582 Sum_probs=34.9
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhhC-----CCCCCCcccc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVR 309 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l-----~~CPvCr~~i 309 (318)
....|.||++--..-+.+||||. +|..|.... ..||+||.++
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45689999998877777899998 899996552 3899999975
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.48 E-value=0.0016 Score=58.50 Aligned_cols=44 Identities=7% Similarity=-0.177 Sum_probs=36.3
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 311 (318)
....|.||++--.+-|.+||||. +|..|-.. -..||+|+.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 35689999999999899999998 89999543 2359999998864
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.35 E-value=0.0019 Score=55.04 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=37.0
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh-----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 311 (318)
....|.||++--..-+.+||||. +|..|... ...||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 35689999998888888999998 89999654 2499999998875
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.24 E-value=0.0068 Score=48.18 Aligned_cols=45 Identities=9% Similarity=-0.100 Sum_probs=37.5
Q ss_pred cccccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 266 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
+....|.+|++--.+-+.+||||. +|..|-.. ...||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 446799999999999899999998 89999543 3589999998764
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.13 E-value=0.0049 Score=47.33 Aligned_cols=44 Identities=9% Similarity=-0.084 Sum_probs=36.9
Q ss_pred ccccccccccccceeEEeCCCCcccccchHhh----CCCCCCCccccCc
Q 021006 267 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 267 ~~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
....|.+|++--.+-+.+||||. +|..|-.. -..||+|+.++..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45689999999999899999998 89999533 4699999998764
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.04 E-value=0.0034 Score=50.68 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=24.0
Q ss_pred eeEEeCCCCcccccchHhh----CCCCCCCcccc
Q 021006 280 SVVLLPCRHLCVCTECDRV----VQACPLCFNVR 309 (318)
Q Consensus 280 ~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i 309 (318)
.++++||+|. ++..|... -..||+||...
T Consensus 67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence 3788899998 89999655 35899999974
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.01 E-value=0.0056 Score=48.49 Aligned_cols=45 Identities=13% Similarity=-0.086 Sum_probs=37.1
Q ss_pred cccccccccccccceeEEeCCC-CcccccchHhh----CCCCCCCccccCc
Q 021006 266 VSGPACKGCRKRVASVVLLPCR-HLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~vlLlPC~-HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
+....|.||++--.+-|++||| |. +|..|-.. ...||+|+.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3457899999999998899999 97 89999544 3489999998764
No 62
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.47 E-value=0.013 Score=47.53 Aligned_cols=45 Identities=22% Similarity=0.647 Sum_probs=32.0
Q ss_pred cccccccccce-eEEeCCCCcccccchHhh-----CCCCCCCccccCceEEE
Q 021006 270 ACKGCRKRVAS-VVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEV 315 (318)
Q Consensus 270 ~C~vC~~~~~~-vlLlPC~HlclC~~C~~~-----l~~CPvCr~~i~~~v~V 315 (318)
.|..|.-.-.. .-++||.| .+|.+|+.. ...||+|+.+|...-..
T Consensus 3 fC~~C~~Pi~iygRmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 36666544332 34569999 499999843 46899999999876543
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.09 E-value=0.0038 Score=51.55 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=0.0
Q ss_pred eeEEeCCCCcccccchHhh----CCCCCCCcccc
Q 021006 280 SVVLLPCRHLCVCTECDRV----VQACPLCFNVR 309 (318)
Q Consensus 280 ~vlLlPC~HlclC~~C~~~----l~~CPvCr~~i 309 (318)
.++++||+|. ++..|... -..||+||.+.
T Consensus 78 ~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 78 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ----------------------------------
T ss_pred ccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 3455799998 89999655 35899999874
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.92 E-value=0.023 Score=43.55 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=31.8
Q ss_pred ccccccccccc--ceeEEeCCC-----CcccccchHhh------CCCCCCCccccCc
Q 021006 268 GPACKGCRKRV--ASVVLLPCR-----HLCVCTECDRV------VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~--~~vlLlPC~-----HlclC~~C~~~------l~~CPvCr~~i~~ 311 (318)
...|.||++.. ...+++||+ |. +...|... ...||+|+..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45899999642 345678997 88 78999543 2489999998753
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.85 E-value=0.022 Score=43.87 Aligned_cols=40 Identities=25% Similarity=0.628 Sum_probs=28.7
Q ss_pred cccccccccccc---eeEEeCCCCcccccchHhh------------CCCCCC--Cccc
Q 021006 268 GPACKGCRKRVA---SVVLLPCRHLCVCTECDRV------------VQACPL--CFNV 308 (318)
Q Consensus 268 ~~~C~vC~~~~~---~vlLlPC~HlclC~~C~~~------------l~~CPv--Cr~~ 308 (318)
...|.||++... .+.+.||+|. +|..|... .-.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 457999997633 2334589998 89999422 127999 9987
No 66
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.72 E-value=1.8 Score=38.52 Aligned_cols=74 Identities=28% Similarity=0.333 Sum_probs=52.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 021006 137 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEAT----A 212 (318)
Q Consensus 137 ~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~----A 212 (318)
+...+.|+..+.|-.. .++.| =.|.|.||+.+.+++.+|..++.+|..|.+.|+.+......- +
T Consensus 23 ~q~~~~le~El~EFqe-sSrEL-----------E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 23 KQSFQEARDELVEFQE-GSREL-----------EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666542 22222 246788999999999999999999999999999988766554 5
Q ss_pred HHHHHHHHHH
Q 021006 213 ASLQAQLQQA 222 (318)
Q Consensus 213 ~~Lr~~Lqqa 222 (318)
+.|..++...
T Consensus 91 ~~Lq~el~~l 100 (189)
T 2v71_A 91 SVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 67
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.58 E-value=0.033 Score=43.24 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=32.2
Q ss_pred cccccccccccceeEEeC-CCCcccccchHhh----------CCCCCC--Cccc
Q 021006 268 GPACKGCRKRVASVVLLP-CRHLCVCTECDRV----------VQACPL--CFNV 308 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlP-C~HlclC~~C~~~----------l~~CPv--Cr~~ 308 (318)
...|.||++--.+-|.+| |||. +|..|-.. ...||+ |+..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 468999999988888887 9998 89999432 238999 9854
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.90 E-value=0.12 Score=48.40 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=34.2
Q ss_pred cccccccccccccceeEE-eCCCCcccccchHhhC------CCCCC--CccccC
Q 021006 266 VSGPACKGCRKRVASVVL-LPCRHLCVCTECDRVV------QACPL--CFNVRD 310 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~vlL-lPC~HlclC~~C~~~l------~~CPv--Cr~~i~ 310 (318)
.....|.+|+.--.+=|. ..|||. +|..|-... ..||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 345689999998887665 599997 899996542 27999 998654
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=89.81 E-value=1.1 Score=30.62 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
.|.....+..+|.|||+|+.-|..|++..+.+.+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3444445567999999999999999999887643
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.88 E-value=14 Score=36.36 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 157 ALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 223 (318)
Q Consensus 157 ~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal 223 (318)
..+..+...+..+...++.++.+..+...+..+.++++..|...|....++.+.....|+.+++...
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~ 571 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4445555555566666666666666666667777777778888888877777777666665555543
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.95 E-value=11 Score=37.01 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021006 155 YRALLGAAEESIARLLREKEAEVEKATRRNAEL---EARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 225 (318)
Q Consensus 155 ~r~ll~avE~~~~~rLReKeeEle~a~rrn~EL---EErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q 225 (318)
....+..++...+.++++.....+++..+..++ ++....+....+.=++...+.......++.++.+....
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333332222222 24444444444454555555555556666777776654
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.06 E-value=2.9 Score=40.77 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 224 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~ 224 (318)
-++.++++||+.+.++..+|++.++.+..|...+.......|..-..|.++++.+.-
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999999999999999999999999999988653
No 73
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=84.27 E-value=0.52 Score=33.93 Aligned_cols=43 Identities=23% Similarity=0.452 Sum_probs=28.1
Q ss_pred cccccccccccceeEEeCCCCcc----cccchHhh------CCCCCCCccccC
Q 021006 268 GPACKGCRKRVASVVLLPCRHLC----VCTECDRV------VQACPLCFNVRD 310 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~Hlc----lC~~C~~~------l~~CPvCr~~i~ 310 (318)
...|.||++....-+++||.+.- +=..|... -..||+|+....
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 46899999876665678986421 22335322 358999998764
No 74
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=82.27 E-value=7.6 Score=34.89 Aligned_cols=63 Identities=25% Similarity=0.272 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 140 GEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQA 217 (318)
Q Consensus 140 ~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~ 217 (318)
.+.-|..|+|+|+ .+|-.+++ |.+.+..++..|+|.+..|+.|+...+.+|.....+|..|..
T Consensus 95 se~YWk~lAE~RR---~AL~eaLe------------EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~ 157 (209)
T 2wvr_A 95 SSQYWKEVAEKRR---KALYEALK------------ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIER 157 (209)
T ss_dssp CTTHHHHHHHHHH---HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH---HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999987 34444444 777777788888888899999999999999888888887753
No 75
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.97 E-value=11 Score=36.20 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 021006 131 ELDQFLQAQGEQLRRALAEKRQ 152 (318)
Q Consensus 131 EiD~~i~~q~ErlR~~l~E~r~ 152 (318)
++.++|+.+.++++..+.+.|.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHH
Confidence 3444555555555555555554
No 76
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.62 E-value=5.1 Score=29.18 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
.-+.+.+++.+...|.+|+.++..|..|.+.|+.+..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788888999999999999999999877643
No 77
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=78.97 E-value=18 Score=28.05 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 141 EQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAAS 214 (318)
Q Consensus 141 ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~ 214 (318)
++-|..|+|+|+. +|-.+++ |.++..+.+..+++-+..+..|+...+.+|.....+|..
T Consensus 19 e~YWk~lAE~Rr~---AL~eaL~------------EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~ 77 (83)
T 1wlq_A 19 SQYWKEVAEQRRK---ALYEALK------------ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEV 77 (83)
T ss_dssp CTHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888873 3333333 333344444444444455555555555555555555444
No 78
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.96 E-value=1.3 Score=33.94 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 175 AEVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 175 eEle~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
+|+|-.+.+++||+|++.+|..|+...+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999999876644
No 79
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=78.85 E-value=20 Score=28.86 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
..++|+.+.||++.+..|. .|..|+..|..
T Consensus 64 ~~~v~eLe~everL~~ENq-------~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENL-------QLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHHHHhhcc
Confidence 5788888888888888774 45678888864
No 80
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=78.65 E-value=0.94 Score=32.57 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=34.0
Q ss_pred cccccccccccceeEEe-CCCCcccccchHhh----CCCCCCCccccCc
Q 021006 268 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDS 311 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLl-PC~HlclC~~C~~~----l~~CPvCr~~i~~ 311 (318)
...|.+|++-..+-++. ||||. .|+.|-.. -..||+++.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 35799999988888888 99998 79999544 2479999988754
No 81
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.32 E-value=18 Score=36.34 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021006 197 EAQVWQAKARAQEATAASLQAQLQQAIMSG 226 (318)
Q Consensus 197 E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q~ 226 (318)
|...-....++.|+....+..+|+..+...
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333344444555556666666666553
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.83 E-value=32 Score=33.11 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSG 226 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q~ 226 (318)
..+.+.|.+++++.....-+.+++++.|.+.-++++.+........+..++-|..+.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 344555666666767777788889999999999999999998888888888876553
No 83
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.48 E-value=16 Score=28.24 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 181 TRRNAELEARAAQLSVEAQVWQAKAR 206 (318)
Q Consensus 181 ~rrn~ELEErlrql~~E~qaWQ~~A~ 206 (318)
+.....|+....+|+.|-.+|+.+.+
T Consensus 47 ~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 47 QHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344477788888888888887643
No 84
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=77.31 E-value=13 Score=28.61 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 141 EQLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 215 (318)
Q Consensus 141 ErlR~~l~E~r~r~~r~ll~avE~--~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~L 215 (318)
++-|..|+|+|+ .+|-.++++ ..-..+-+|++||.. |..|+......|...+.+|..|
T Consensus 15 e~YWk~lAE~RR---~AL~eaL~EN~~Lh~~ie~~~eEi~~--------------LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 15 SQYWKEVAEQRR---KALYEALKENEKLHKEIEQKDSEIAR--------------LRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp CTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777776 344444442 122334445555544 4444444445555555555444
No 85
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=75.30 E-value=11 Score=29.88 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 155 YRALLGAAEESIAR---------LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 155 ~r~ll~avE~~~~~---------rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
-+.++.-|..++++ ++|+.+.||.++.+....||-+++.|.
T Consensus 30 R~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 30 RRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555544 699999999999999999999988763
No 86
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.81 E-value=47 Score=29.77 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 220 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lq 220 (318)
+.....||+.+.+++..||+.+..+.......+......++....++..|.
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667777777766666666666655555555554444444443
No 87
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=74.30 E-value=26 Score=27.19 Aligned_cols=45 Identities=31% Similarity=0.525 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 140 GEQLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAEL 187 (318)
Q Consensus 140 ~ErlR~~l~E~r~r~~r~ll~avE~--~~~~rLReKeeEle~a~rrn~EL 187 (318)
.+.-|..|+|+|+ .+|-.++++ ..-.++-.|++||...+..|.+|
T Consensus 26 se~YWk~lAE~RR---~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 26 SSQYWKEVAEKRR---KALYEALKENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888887 334444442 12223333444444444433333
No 88
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=73.54 E-value=28 Score=26.66 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 021006 157 ALLGAAEESIARLLREK----EAEVEKATRRNAELEA-------RAAQLSVEAQVWQ 202 (318)
Q Consensus 157 ~ll~avE~~~~~rLReK----eeEle~a~rrn~ELEE-------rlrql~~E~qaWQ 202 (318)
+|++|||.++-+||||+ -+||+.+++-..||.+ -+.++..|-..|.
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 47788888888888775 4677777776666543 3444444544443
No 89
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=73.45 E-value=0.77 Score=36.83 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=34.9
Q ss_pred cccccccccccceeEEeCCCCcccccchHhhC----CCCCCCccccCceEEE
Q 021006 268 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEV 315 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~V 315 (318)
...|+.|+-...+.| -|.--.+|..|-..| +.||+|..++...|.|
T Consensus 28 ~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 358999998888633 465444999998875 5999999988766554
No 90
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.02 E-value=12 Score=28.45 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
||+||+-|+...+++.+.++-++.|..|.+-.+.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7778888888888888888888888777765543
No 91
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=70.74 E-value=29 Score=26.12 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 216 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr 216 (318)
..+|++|.+||++.+...-.|...+-.-..=+--.++.+.-.+...++|.
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 46789999999999888777776665544444444444444444444443
No 92
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.38 E-value=22 Score=25.38 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 184 NAELEARAAQLSVEAQVWQAKARA 207 (318)
Q Consensus 184 n~ELEErlrql~~E~qaWQ~~A~~ 207 (318)
..+||.++..|..++..+......
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444333
No 93
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.50 E-value=15 Score=29.92 Aligned_cols=44 Identities=27% Similarity=0.350 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 021006 181 TRRNAELEARAAQLSVEAQVWQAKARAQEATA----ASLQAQLQQAIM 224 (318)
Q Consensus 181 ~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A----~~Lr~~Lqqal~ 224 (318)
-+++.+|..+..+|..|...|+.+.......+ +.|..++.++..
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~ 49 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRA 49 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999888776654 445555555443
No 94
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=67.44 E-value=51 Score=27.15 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=48.0
Q ss_pred chhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 021006 117 LSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKR------QRHYRALLGAAEESIA---RLLREKEAEVEKATRRNAEL 187 (318)
Q Consensus 117 l~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r------~r~~r~ll~avE~~~~---~rLReKeeEle~a~rrn~EL 187 (318)
.-|+|.++.+ =..+-++|+.+.-+-...|.+.- .+-+..|..+++...+ +++.+.+.||...+.++.+.
T Consensus 13 C~dGLrAq~E--CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 13 ARDGLRAVME--ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566655433 23567777777666555555544 2223445555554333 35666666777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 021006 188 EARAAQLSVEAQVW 201 (318)
Q Consensus 188 EErlrql~~E~qaW 201 (318)
++.+.+|+.+++..
T Consensus 91 ~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 91 SAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhchhh
Confidence 76666666666543
No 95
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=66.91 E-value=49 Score=26.69 Aligned_cols=88 Identities=19% Similarity=0.349 Sum_probs=48.4
Q ss_pred hhhhhhhHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 122 ASPIKRQRDELDQF------LQAQGEQLRRALAEKRQRHYRAL--LGAAEESIARLLREKEAEVEKATRRNAELEARAAQ 193 (318)
Q Consensus 122 ~~~l~~q~~EiD~~------i~~q~ErlR~~l~E~r~r~~r~l--l~avE~~~~~rLReKeeEle~a~rrn~ELEErlrq 193 (318)
-.+|..-+..||.. |.++.+.++..+++-|.+.-..+ -..+|..+ ..|| -.++.+.-...+||.++..
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di-~~lr---K~lD~~~l~r~dLE~~ies 94 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTL-QSFR---QDVDNASLARLDLERKVES 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhh---hcccHHHHHHHHHHHHHHH
Confidence 34444444555543 45677888888888887654333 12233221 1222 2445555556778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 194 LSVEAQVWQAKARAQEATAASLQ 216 (318)
Q Consensus 194 l~~E~qaWQ~~A~~nEa~A~~Lr 216 (318)
|..|-.-.++. .|..+..|+
T Consensus 95 L~eEl~FLKk~---heeEl~eLq 114 (119)
T 3ol1_A 95 LQEEIAFLKKL---HEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHH
Confidence 87776655443 333444443
No 96
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=64.81 E-value=6.6 Score=25.98 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
||.+.|+.+|.+..++++||..+.+|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5677888999999999999976666654
No 97
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=63.87 E-value=9.3 Score=25.31 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEA 189 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEE 189 (318)
-+-+|++||.+.+.+|.+|.|
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHh
Confidence 355689999999999988865
No 98
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=63.70 E-value=23 Score=30.75 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 162 AEESIARLLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 162 vE~~~~~rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
+.+.+..+|.+.|..++.+ +..|||+|++..
T Consensus 6 ~~ee~~e~L~~~e~l~~el---~~tWeeKl~~te 36 (184)
T 4egx_A 6 FSEEAIERLKETEKIIAEL---NETWEEKLRRTE 36 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH---HhHHHHHHHHHH
Confidence 3445566777777776655 447888877543
No 99
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=63.54 E-value=9.2 Score=25.28 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||.+.|+-+|....++++||..+.+|+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567778888888999999997665554
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.68 E-value=80 Score=38.74 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 219 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~L 219 (318)
|.+++++|+.+..+.+++|+++..+..+.+.-...++.-+..+......|
T Consensus 2023 l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2023 ANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555666666555555444333333333333333333
No 101
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=59.65 E-value=12 Score=24.52 Aligned_cols=23 Identities=26% Similarity=0.461 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 172 EKEAEVEKATRRNAELEARAAQL 194 (318)
Q Consensus 172 eKeeEle~a~rrn~ELEErlrql 194 (318)
+--.+|+.+++.|.-||+.++.|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 44568999999999999998875
No 102
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.50 E-value=73 Score=25.85 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=64.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 135 FLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAAS 214 (318)
Q Consensus 135 ~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~ 214 (318)
=|+..+++|+..+++-+.+...+- .-...-.-....||...+..+-.|-.++|.|.+.++..-+.++..-+....
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~-----~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQY-----AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 356667777777777765444321 111122233456888888899999999999999999999998888888888
Q ss_pred HHHHHHHHHHccC
Q 021006 215 LQAQLQQAIMSGA 227 (318)
Q Consensus 215 Lr~~Lqqal~q~~ 227 (318)
+.+.+.+|+...+
T Consensus 82 ~E~k~n~aiErna 94 (111)
T 2v66_B 82 FEQRLNQAIERNA 94 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 103
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=54.70 E-value=71 Score=24.99 Aligned_cols=86 Identities=10% Similarity=0.212 Sum_probs=52.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQRHYRALLGAA-EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVW------QAKARAQ 208 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~r~~r~ll~av-E~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaW------Q~~A~~n 208 (318)
|+...++|+..+.+....|.+.|-++- +..+- ++.|.-+..+.++...+-.+|+.|..++..- -...+-.
T Consensus 17 I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~---~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir 93 (127)
T 1ez3_A 17 IRGFIDKIAENVEEVKRKHSAILASPNPDEKTK---EELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIR 93 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence 345556777778888887877654221 11111 2334455566667777777788777766531 1233566
Q ss_pred HHHHHHHHHHHHHHHH
Q 021006 209 EATAASLQAQLQQAIM 224 (318)
Q Consensus 209 Ea~A~~Lr~~Lqqal~ 224 (318)
.+.+.+|...+..++.
T Consensus 94 ~~q~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 94 KTQHSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888888887764
No 104
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.68 E-value=35 Score=24.31 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
..++.+.+.+++.+...|.+|...+..|..|...+...
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999998765543
No 105
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.17 E-value=94 Score=25.80 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=40.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 118 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVE 197 (318)
Q Consensus 118 ~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E 197 (318)
.=+|+.++.+-+.++|.+. .+.+.+...+.+... ..++ .--++.+.+.|++++.+++.+|++++..|..|
T Consensus 63 ALNiadEl~k~~~~~~~L~-~~l~~~~kE~~~lK~-------el~~--~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 63 YLNIADDYFKAKKMADSLS-LDIENKDKEIYDLKH-------ELIA--AQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555655543 333444444444332 1111 12346667778888888888888888888765
Q ss_pred HH
Q 021006 198 AQ 199 (318)
Q Consensus 198 ~q 199 (318)
..
T Consensus 133 ~~ 134 (138)
T 3hnw_A 133 LN 134 (138)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 106
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=53.68 E-value=56 Score=25.92 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
-.++.++||.++.+++..||.-. ..|+.-...|+-|.++|+..
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iq-----------s~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQ-----------NNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHHHHHHHH
Confidence 34567778877777777776432 22223344455566666543
No 107
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.46 E-value=14 Score=37.52 Aligned_cols=43 Identities=26% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 180 ATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 180 a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
|.++..||++|++++..|...|+......+.+|.-|...+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~ 375 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQL 375 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344567777777777777777777777776666665555443
No 108
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=49.42 E-value=23 Score=23.10 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||-+.|+.+|.+..+|.+||.-+.+|+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566778888888888888887766664
No 109
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.29 E-value=1.2e+02 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQ 199 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~q 199 (318)
.+|+...+-.+..+|++++.+..|+.
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777778888889999999999983
No 110
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.52 E-value=1.8e+02 Score=31.74 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 021006 181 TRRNAELEARAAQL 194 (318)
Q Consensus 181 ~rrn~ELEErlrql 194 (318)
.+...+||++..++
T Consensus 1004 ~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 1004 QTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334333333
No 111
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.16 E-value=66 Score=31.27 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 171 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 223 (318)
Q Consensus 171 ReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal 223 (318)
.+.++|++....+..+|++.++++..|...-.......+..-..|.++++.+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35667888888888888888888888888777776666667777888887764
No 112
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.91 E-value=46 Score=25.16 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEKATR 182 (318)
Q Consensus 168 ~rLReKeeEle~a~r 182 (318)
++|.+||++|.....
T Consensus 47 k~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 47 LELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655544
No 113
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=47.77 E-value=95 Score=24.01 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
+++.+...|..|..++.+|..|.+.++.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554443
No 114
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.87 E-value=72 Score=22.39 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQV 200 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEErlrql~~E~qa 200 (318)
..|+|+...++..+..+|..|.+-|+..+.+-..
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~ 41 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLA 41 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888889999999988888877766543
No 115
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.33 E-value=78 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 205 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A 205 (318)
+-+.+.+++.....|.+|...+..|..|...|....
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666667777777777777777777776554
No 116
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=46.00 E-value=23 Score=24.93 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021006 167 ARLLREKEAEVEKATRRNAELEA 189 (318)
Q Consensus 167 ~~rLReKeeEle~a~rrn~ELEE 189 (318)
-+++++.|.++.+++++++.|||
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 46688888899999999999986
No 117
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.66 E-value=2.3e+02 Score=28.94 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 186 ELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 221 (318)
Q Consensus 186 ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqq 221 (318)
|||.++.-|+.+.+.--...+.-+..+..++.+++.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655544433333334444444444333
No 118
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.58 E-value=9.7 Score=35.95 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=30.7
Q ss_pred cccccccccccceeEEeC----CCC-cccccchHhh--C--CCCCCCcccc
Q 021006 268 GPACKGCRKRVASVVLLP----CRH-LCVCTECDRV--V--QACPLCFNVR 309 (318)
Q Consensus 268 ~~~C~vC~~~~~~vlLlP----C~H-lclC~~C~~~--l--~~CPvCr~~i 309 (318)
...|.+|+..+...++.. =|+ ++.|..|... + -.||.|....
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 468999999998766652 333 4579999654 2 4999999873
No 119
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.51 E-value=59 Score=22.14 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
++---+.||++...++.+|..+++.|...+
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344457788888888888888888887654
No 120
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=45.49 E-value=45 Score=21.15 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEAQV 200 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~qa 200 (318)
.|+|+.+.+.-..+|.+|+.+|..-.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777777777777777777655543
No 121
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=45.37 E-value=29 Score=22.51 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||-+.|+-+|.+..+|.+||..+.+|+
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345666777777788888887666554
No 122
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=45.23 E-value=1.1e+02 Score=24.23 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 021006 168 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSG 226 (318)
Q Consensus 168 ~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~q~ 226 (318)
.-||++|++..-.++-.+.|.+.|..-.+-.+.|++..++-+..+..|...|+-+.-+.
T Consensus 32 ~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 32 DSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55888999999999999999999999999999999999999999999999999987654
No 123
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.58 E-value=30 Score=22.42 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||.+.|+-+|....++.+||..+.++.
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456677777888888888887666554
No 124
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=44.45 E-value=4.2 Score=39.66 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=28.5
Q ss_pred ccccccccccce---e---E--EeCCCCcccccchHhh---------------CCCCCCCccccCceE
Q 021006 269 PACKGCRKRVAS---V---V--LLPCRHLCVCTECDRV---------------VQACPLCFNVRDSSV 313 (318)
Q Consensus 269 ~~C~vC~~~~~~---v---l--LlPC~HlclC~~C~~~---------------l~~CPvCr~~i~~~v 313 (318)
..|.||++.-.. + . -.+|+|. +=..|-.. ...||+|+.+|..+.
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 478888864332 1 1 1368887 67788422 147999999987654
No 125
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=43.93 E-value=26 Score=22.71 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||-+.|+.+|....+|.+||.-+.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344566777777788888887666654
No 126
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.75 E-value=1.3e+02 Score=24.48 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 021006 129 RDELDQFLQAQGEQLRRALAEKR 151 (318)
Q Consensus 129 ~~EiD~~i~~q~ErlR~~l~E~r 151 (318)
+..||+ |+..+++||..|+...
T Consensus 14 D~~Ie~-Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 14 DHLIER-LYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHH
Confidence 345666 5666777777766654
No 127
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=43.75 E-value=1.2e+02 Score=24.21 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=35.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 134 QFLQAQGEQLRRALAEKRQRHYRALLGAAEES--IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 203 (318)
Q Consensus 134 ~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~--~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~ 203 (318)
.|=+.|.|+|--.=..---+-|..|-..++.. --+|||....+. ..+..+|+..+.+|..|++....
T Consensus 18 ~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~---~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 18 TYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRL---DARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666654332222222333333333322 133444433222 56788889899999998887643
No 128
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.31 E-value=92 Score=22.32 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 165 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 219 (318)
Q Consensus 165 ~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~L 219 (318)
.++.|-|+|.-+ +..+|+.++..|..++......+..-+..+..|+.-|
T Consensus 12 ~AA~R~R~KKk~------~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 12 TAATRYRQKKRA------EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665433 4567777888888888887777766666666665443
No 129
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.13 E-value=88 Score=22.03 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 170 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 170 LReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
+-+.+.+++.....|.+|...+..|..|...|+..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666777777777777777777766543
No 130
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=42.12 E-value=35 Score=22.22 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||.+.|+-+|+...+|.+||..+.+|+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566677777778888888887666654
No 131
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=42.06 E-value=1.4e+02 Score=24.25 Aligned_cols=52 Identities=31% Similarity=0.326 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 171 REKEAEVEKATRRNAELEARAAQLSVE----AQVWQAKARAQEATAASLQAQLQQA 222 (318)
Q Consensus 171 ReKeeEle~a~rrn~ELEErlrql~~E----~qaWQ~~A~~nEa~A~~Lr~~Lqqa 222 (318)
|+..++|+++..-..+||+.|..-..+ .+..+..++.+|.....|+..--++
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455558888888888888888777664 4567777777887766666554443
No 132
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.53 E-value=2.6e+02 Score=27.27 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 125 IKRQRDELDQFLQAQGEQLRRALAE-------------KRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 191 (318)
Q Consensus 125 l~~q~~EiD~~i~~q~ErlR~~l~E-------------~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErl 191 (318)
+.+-..+|+.|++.-.+.||.-+.. --++|+.-|=..|...+. .||....-|+....+++-||..|
T Consensus 79 ~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 79 YQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667766666666554432 233455666677777777 88888888888888888888877
Q ss_pred HHHHHHH
Q 021006 192 AQLSVEA 198 (318)
Q Consensus 192 rql~~E~ 198 (318)
+--..-|
T Consensus 158 d~c~~~C 164 (390)
T 1deq_A 158 DIKIRSC 164 (390)
T ss_pred HHHhccc
Confidence 4333333
No 133
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=41.20 E-value=7.3 Score=29.68 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=21.7
Q ss_pred ccccccccc---cceeEEeCCCCcccccchHhh
Q 021006 269 PACKGCRKR---VASVVLLPCRHLCVCTECDRV 298 (318)
Q Consensus 269 ~~C~vC~~~---~~~vlLlPC~HlclC~~C~~~ 298 (318)
..|.+|.+. ++...-++|+|. +|..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 579999863 344444899998 89999764
No 134
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=40.25 E-value=41 Score=21.90 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||-+.|+-+|....+|.+||..+.+|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445556666666777777776666654
No 135
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.90 E-value=40 Score=21.98 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||.+.|+-+|.+..++.+|+.-+.+|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 566777778888888888887666654
No 136
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=39.84 E-value=83 Score=28.15 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=8.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 021006 130 DELDQFLQAQGEQLRRALAEKR 151 (318)
Q Consensus 130 ~EiD~~i~~q~ErlR~~l~E~r 151 (318)
.|++.+ ....+.|...+++.+
T Consensus 59 ~e~~~l-~~~l~~l~~e~~el~ 79 (213)
T 4ani_A 59 EELAAA-KAQIAELEAKLSEME 79 (213)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHH
Confidence 345432 333444444444433
No 137
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=39.13 E-value=3.2e+02 Score=27.68 Aligned_cols=111 Identities=20% Similarity=0.301 Sum_probs=56.4
Q ss_pred CCcchhcchhhh-hhhhhhhHHHHHHH------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 110 SPSLLSFLSDDL-ASPIKRQRDELDQF------------LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAE 176 (318)
Q Consensus 110 s~~~~s~l~~~l-~~~l~~q~~EiD~~------------i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeE 176 (318)
.+...| +.+-| ..+++|+.+|-.+- .+.+.|+.|++|.+.-+-+.+-- -....+.+-+-....|
T Consensus 281 ePlYIS-vs~ilt~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~--er~~~t~~~~~~~~~~ 357 (551)
T 2b5u_A 281 NAVYVS-VSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQ--ERQAKAVQVYNSRKSE 357 (551)
T ss_dssp CCEEEE-EEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CceEEE-EeecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHH
Confidence 355555 45555 34666655554432 22334555555554432221110 0001122334445567
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HH--HHHHHH---HHHHHHHHHHHHHHHHHHH
Q 021006 177 VEKATRRNAELEARAAQLSV------EA--QVWQAK---ARAQEATAASLQAQLQQAI 223 (318)
Q Consensus 177 le~a~rrn~ELEErlrql~~------E~--qaWQ~~---A~~nEa~A~~Lr~~Lqqal 223 (318)
|+.+++...++...+.++.. |+ ..||.- |+.....++.+.+.++.+-
T Consensus 358 ~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~ 415 (551)
T 2b5u_A 358 LDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAA 415 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHHh
Confidence 88888888888877777662 22 479873 3333444555555555554
No 138
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=38.95 E-value=58 Score=20.58 Aligned_cols=26 Identities=42% Similarity=0.441 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
.|.|+..+...|-.||..+.||.-||
T Consensus 6 lekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45577777778888888888887775
No 139
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.75 E-value=1.9e+02 Score=24.98 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=24.8
Q ss_pred hhhhhhhhhHHHHHHHHHHhHH---HHHHHHHHHHH
Q 021006 120 DLASPIKRQRDELDQFLQAQGE---QLRRALAEKRQ 152 (318)
Q Consensus 120 ~l~~~l~~q~~EiD~~i~~q~E---rlR~~l~E~r~ 152 (318)
+=..+|++|-.|+...++.+.| |||+.-.|..+
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k 41 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSK 41 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456799999999999999866 78887777764
No 140
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=38.59 E-value=42 Score=21.86 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||-+.|+-+|.+..++.+||..+.+|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455667777777777888876665554
No 141
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=38.46 E-value=1.7e+02 Score=24.37 Aligned_cols=86 Identities=9% Similarity=0.217 Sum_probs=46.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLL-REKEAEVEKATRRNAELEARAAQLSVEAQV------WQAKARAQ 208 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rL-ReKeeEle~a~rrn~ELEErlrql~~E~qa------WQ~~A~~n 208 (318)
|+...++++..+.+..+.|.+.|.++-... .+ ++.+.-+..+.+....+..+|+.|..++.. .-...+-.
T Consensus 48 I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~---~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir 124 (180)
T 1s94_A 48 IRAMIDKISDNVDAVKKKHSDILSAPQTDD---QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIR 124 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHH
Confidence 345556677777777777766654322211 22 223334455566666677777777765422 22222444
Q ss_pred HHHHHHHHHHHHHHHH
Q 021006 209 EATAASLQAQLQQAIM 224 (318)
Q Consensus 209 Ea~A~~Lr~~Lqqal~ 224 (318)
.....+|...+..++.
T Consensus 125 ~~q~~~L~~kf~~~m~ 140 (180)
T 1s94_A 125 KTQYSTISRKFVEVMS 140 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567788888877654
No 142
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.24 E-value=1.8e+02 Score=31.72 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 210 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa 210 (318)
.+.|++.+..+..+|++.+..+..+.+...+.-+..|.
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555444444443333333
No 143
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.99 E-value=1.1e+02 Score=31.07 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 124 PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 196 (318)
Q Consensus 124 ~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~ 196 (318)
++++-..+++.|++.-.|.||..+.... .+...+..+-..+-+++-..+++|+.-..++..|+-.|+.+..
T Consensus 75 dlsKnsKdseqy~k~~~E~Lr~rq~q~~--dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~ 145 (562)
T 3ghg_A 75 EYQKNNKDSHSLTTNIMEILRGDFSSAN--NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLV 145 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSHHHHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhchhHHHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777666665555444 3333333333333333333444444444444444444444333
No 144
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.94 E-value=1.5e+02 Score=28.96 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=51.7
Q ss_pred hccCC-Ccchhcchhhhhh------hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 106 IMCQS-PSLLSFLSDDLAS------PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVE 178 (318)
Q Consensus 106 ~~~~s-~~~~s~l~~~l~~------~l~~q~~EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle 178 (318)
++|.. .+... +.+|+.. .|+.--++.|+=|+..++.|+..|.+..+-|.-...-... +...||.+-..+.
T Consensus 29 s~Ck~~d~~~C-~DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~--~~~~lk~~~~q~~ 105 (390)
T 1deq_A 29 SACKETGWPFC-SDEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKN--IVELMRGDFAKAN 105 (390)
T ss_pred cccCCCCCCCC-chhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhhc
Confidence 34543 34444 4777655 5777777888889999999999999998877554433222 3344444443333
Q ss_pred H----HHHHHHHHHHHHHHH
Q 021006 179 K----ATRRNAELEARAAQL 194 (318)
Q Consensus 179 ~----a~rrn~ELEErlrql 194 (318)
. ...-+.+||.++.-|
T Consensus 106 dndn~~~e~s~eLe~~i~~l 125 (390)
T 1deq_A 106 NNDNTFKQINEDLRSRIEIL 125 (390)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 3 333344555554443
No 145
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=37.23 E-value=1.1e+02 Score=21.92 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021006 183 RNAELEARAAQLSVEAQVW 201 (318)
Q Consensus 183 rn~ELEErlrql~~E~qaW 201 (318)
++.+||.++..|..|+..+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L 49 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555666666665555544
No 146
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=36.38 E-value=1.7e+02 Score=23.55 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 174 EAEVEKATRRNAELEARAAQLSVEAQ 199 (318)
Q Consensus 174 eeEle~a~rrn~ELEErlrql~~E~q 199 (318)
+.++..+..++..||+.+.+++.+.+
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44566666666677766666666543
No 147
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=34.96 E-value=1.1e+02 Score=27.66 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
+..-+++|.++..+..+.+++|..+.
T Consensus 69 ~~~~~~eA~~~l~~i~~~~~~L~~~l 94 (249)
T 3axj_A 69 ISAACGLARKQVELCAQKYQKLAELV 94 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556777777777777778887764
No 148
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=34.79 E-value=29 Score=27.43 Aligned_cols=45 Identities=22% Similarity=0.618 Sum_probs=30.0
Q ss_pred cccccccccccccce----eEEeCCCCc--ccccchHhh-----CCCCCCCccccC
Q 021006 266 VSGPACKGCRKRVAS----VVLLPCRHL--CVCTECDRV-----VQACPLCFNVRD 310 (318)
Q Consensus 266 ~~~~~C~vC~~~~~~----vlLlPC~Hl--clC~~C~~~-----l~~CPvCr~~i~ 310 (318)
.....|.||.+.... -+|+-|..- .+|+.|..- -+.||-|.+...
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 345789999876221 255566542 368999543 469999998765
No 149
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=34.22 E-value=1.9e+02 Score=23.60 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=23.5
Q ss_pred cchhcchhhhhhhhhhhHHHHHHHHHHhHHH
Q 021006 112 SLLSFLSDDLASPIKRQRDELDQFLQAQGEQ 142 (318)
Q Consensus 112 ~~~s~l~~~l~~~l~~q~~EiD~~i~~q~Er 142 (318)
.+.++.+|-|.-+|++-+.+.|.+++.|.++
T Consensus 28 ~~~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 28 IPFPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678889999999999999999999776
No 150
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=34.10 E-value=54 Score=21.36 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLS 195 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~ 195 (318)
||.+.|+-+|+...++.+|+..+.+|+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566677777777788888877666554
No 151
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=33.83 E-value=1.7e+02 Score=22.85 Aligned_cols=40 Identities=30% Similarity=0.287 Sum_probs=16.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 132 LDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEV 177 (318)
Q Consensus 132 iD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEl 177 (318)
-|-+++-| -+|+-.|.|..-.+ .|--+....+.+++|||.
T Consensus 39 Pd~vv~RQ-----EAl~aaRlRMQEel-dAqAe~~keKQkqlEEeK 78 (89)
T 2q2f_A 39 PDVVVKRQ-----EALAAARLKMQEEL-NAQVEKHKEKLKQLEEEK 78 (89)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 35555544 24444444433333 333333344444444443
No 152
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.46 E-value=2.5e+02 Score=28.02 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=34.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 131 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 210 (318)
Q Consensus 131 EiD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa 210 (318)
.+|.++.+..++ |..+.+.. ..++-..++...+++..+.++ +++.+..+.++| ....++.|+
T Consensus 31 ~~~~~~~ld~~~-r~~~~~~~--~l~~~rn~~sk~i~~~k~~~~-~~~~l~~~~~~l--------------~~~i~~le~ 92 (485)
T 3qne_A 31 LVDEIIAEYKEW-VKLRFDLD--EHNKKLNSVQKEIGKRFKAKE-DAKDLIAEKEKL--------------SNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHH--------------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH--------------HHHHHHHHH
Confidence 378888775432 22222221 233333445555544433332 233233333333 333344445
Q ss_pred HHHHHHHHHHHHHHc
Q 021006 211 TAASLQAQLQQAIMS 225 (318)
Q Consensus 211 ~A~~Lr~~Lqqal~q 225 (318)
....+..+|+..+..
T Consensus 93 ~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 93 KEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 555666667666655
No 153
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=32.87 E-value=14 Score=33.42 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHhHH
Q 021006 125 IKRQRDELDQFLQAQGE 141 (318)
Q Consensus 125 l~~q~~EiD~~i~~q~E 141 (318)
-..|...|++++..|.+
T Consensus 43 t~e~~~li~~lv~a~~~ 59 (283)
T 3ipq_A 43 SPEQLGMIEKLVAAQQQ 59 (283)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34567789999998853
No 154
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=32.69 E-value=88 Score=26.27 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 021006 206 RAQEATAASLQAQLQQ 221 (318)
Q Consensus 206 ~~nEa~A~~Lr~~Lqq 221 (318)
...|..+..|...|..
T Consensus 56 ~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 56 REIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444555555544
No 155
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=32.18 E-value=79 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=25.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 135 FLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKA 180 (318)
Q Consensus 135 ~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a 180 (318)
=|..|..-++..|.++|+.---.-|..+| .=|||.++||++.
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe----~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHHHHHH
Confidence 44555666777777777654444455555 3477777777654
No 156
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=32.05 E-value=1.9e+02 Score=22.84 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 169 LLREKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 169 rLReKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
+||+.++-|+.+.|-+- -|++.++..|+
T Consensus 47 ~i~el~akidd~Lk~l~--~EklAkldLE~ 74 (101)
T 1d7m_A 47 RLRELEAKLDETLKNLE--LEKLARMELEA 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc--HHHHHHHHHHH
Confidence 45666666655544322 24555555554
No 157
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=31.89 E-value=1.6e+02 Score=21.93 Aligned_cols=33 Identities=6% Similarity=0.025 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 172 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 204 (318)
Q Consensus 172 eKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~ 204 (318)
..--+.+.+..+..++.++|..|...+..++..
T Consensus 72 ~~h~~~~~I~~r~~~l~~~w~~L~~~~~~Rr~~ 104 (107)
T 2spc_A 72 QNHYASNLVDEKRKQVLERWRHLKEGLIEKRSR 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567778889999999999999998888764
No 158
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=31.44 E-value=1e+02 Score=21.77 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=26.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKAT 181 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~ 181 (318)
+..|..-++..|.++++.---.-|..+| .=|||.+.||++..
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le----~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHH----HHHHHHHHHHHHHh
Confidence 4556677778888877655444455555 34677777766543
No 159
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=31.39 E-value=1.7e+02 Score=22.24 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 177 VEKATRRNAELEARAAQLSVEAQVWQ 202 (318)
Q Consensus 177 le~a~rrn~ELEErlrql~~E~qaWQ 202 (318)
|..+..+|.+||++|+.+....+.=+
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44455678888888888877554443
No 160
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.72 E-value=1.7e+02 Score=21.64 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQ 199 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~q 199 (318)
+.+.+...|..|-+.+..|..|..
T Consensus 44 ~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 44 LHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555543
No 161
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.13 E-value=2.3e+02 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 173 KEAEVEKATRRNAELEARAAQLSVEAQ 199 (318)
Q Consensus 173 KeeEle~a~rrn~ELEErlrql~~E~q 199 (318)
-+.++..+..++..||+.+.+++.+.+
T Consensus 75 ~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 75 YCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666665543
No 162
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=29.03 E-value=1.1e+02 Score=22.23 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 134 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKA 180 (318)
Q Consensus 134 ~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a 180 (318)
..+..|..-++..|.++++.-----|..++ .-||+.++|+.+.
T Consensus 12 dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le----~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLT----ENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHcCChHHHHHHH----HHHHHHHHHHHHH
Confidence 467788888999999988755444455555 3477777776654
No 163
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.84 E-value=4.1e+02 Score=28.92 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 172 EKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 172 eKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
+.+++++++..+..+|++++..+..+.
T Consensus 910 ~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 910 EAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 164
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.30 E-value=16 Score=32.24 Aligned_cols=15 Identities=33% Similarity=1.028 Sum_probs=12.7
Q ss_pred CCCCCCccccCceEE
Q 021006 300 QACPLCFNVRDSSVE 314 (318)
Q Consensus 300 ~~CPvCr~~i~~~v~ 314 (318)
..||+|..++..+..
T Consensus 187 ~~CP~C~~~k~~F~~ 201 (202)
T 1yuz_A 187 EKCPICFRPKDTFTA 201 (202)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCChHHhee
Confidence 699999999887765
No 165
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.84 E-value=37 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=25.3
Q ss_pred ccccccccccce-eEEeCCCCcccccchHhh------CCCCCCCccccCce
Q 021006 269 PACKGCRKRVAS-VVLLPCRHLCVCTECDRV------VQACPLCFNVRDSS 312 (318)
Q Consensus 269 ~~C~vC~~~~~~-vlLlPC~HlclC~~C~~~------l~~CPvCr~~i~~~ 312 (318)
..|.||++--.. ....-|+|. +=..|..+ -..||+|+......
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 467788765431 111156665 44566542 25899999876543
No 166
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=27.78 E-value=26 Score=24.54 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=10.9
Q ss_pred CCCCCccccCceEEE
Q 021006 301 ACPLCFNVRDSSVEV 315 (318)
Q Consensus 301 ~CPvCr~~i~~~v~V 315 (318)
.||+|...+..+..+
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 688888877777654
No 167
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=27.76 E-value=24 Score=24.77 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=9.3
Q ss_pred CCCCCccccCceEE
Q 021006 301 ACPLCFNVRDSSVE 314 (318)
Q Consensus 301 ~CPvCr~~i~~~v~ 314 (318)
.||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 57777777666554
No 168
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.16 E-value=90 Score=23.16 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021006 163 EESIARLLREKEAEVEKA 180 (318)
Q Consensus 163 E~~~~~rLReKeeEle~a 180 (318)
++.....|+.||+-|..+
T Consensus 13 ~e~~~~~i~~Kde~I~eL 30 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKEL 30 (67)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHH
Confidence 333444455555554443
No 169
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.89 E-value=1.7e+02 Score=20.56 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 183 RNAELEARAAQLSVEAQVWQAKARAQEATAASLQA 217 (318)
Q Consensus 183 rn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~ 217 (318)
...+||+++..+..++..-+.....-+.....|+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888777666555555555543
No 170
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.86 E-value=2.2e+02 Score=21.93 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 181 TRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 220 (318)
Q Consensus 181 ~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~Lq 220 (318)
+.+..+++.++..|..|+...+.....-+..+..|+.-|-
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999999999998887776666666664443
No 171
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=26.85 E-value=4.8e+02 Score=25.88 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 021006 168 RLLREKEAEVEK----ATRRNAELEARAAQL 194 (318)
Q Consensus 168 ~rLReKeeEle~----a~rrn~ELEErlrql 194 (318)
..+.+++..+.. +.....+||+....+
T Consensus 128 ~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 128 NKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 334444444444 444444555444443
No 172
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.61 E-value=26 Score=24.84 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=11.5
Q ss_pred CCCCCccccCceEEE
Q 021006 301 ACPLCFNVRDSSVEV 315 (318)
Q Consensus 301 ~CPvCr~~i~~~v~V 315 (318)
.||+|...+..+..+
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 688888888777654
No 173
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.61 E-value=24 Score=25.14 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=10.0
Q ss_pred CCCCCccccCceEEE
Q 021006 301 ACPLCFNVRDSSVEV 315 (318)
Q Consensus 301 ~CPvCr~~i~~~v~V 315 (318)
.||+|...+..+..+
T Consensus 38 ~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 38 VCPLCGVGKDEFEEV 52 (54)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCcCCCCcHHHceEc
Confidence 677777777666543
No 174
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=25.96 E-value=96 Score=25.82 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 021006 209 EATAASLQAQLQQ 221 (318)
Q Consensus 209 Ea~A~~Lr~~Lqq 221 (318)
++.+..|...|..
T Consensus 59 e~ri~~L~~~L~~ 71 (156)
T 2f23_A 59 EARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3344445544544
No 175
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.86 E-value=31 Score=26.51 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.5
Q ss_pred CCCCCccccCceEEE
Q 021006 301 ACPLCFNVRDSSVEV 315 (318)
Q Consensus 301 ~CPvCr~~i~~~v~V 315 (318)
.||+|..++..+..+
T Consensus 62 ~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMV 76 (81)
T ss_dssp CCTTTCCCGGGEEEE
T ss_pred cCCCCCCCHHHcEEc
Confidence 799999999998876
No 176
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=24.66 E-value=2.9e+02 Score=22.55 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=18.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR 183 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rr 183 (318)
+..+.||||+......+.|- ..-....-|-|.|+++++++
T Consensus 37 L~~ELeRLr~~~d~~~K~HE--------~kklqLkse~e~E~ae~k~K 76 (115)
T 3vem_A 37 FLHELEKLRRESENSKKTFE--------EKKSILKAELERKMAEVQAE 76 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444332 22222333345556666554
No 177
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.60 E-value=2.5e+02 Score=21.77 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHc
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQV--------WQAKARAQEATAASLQAQLQQAIMS 225 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qa--------WQ~~A~~nEa~A~~Lr~~Lqqal~q 225 (318)
-|..+.+.+-|.+|-|+|+..|.+. ...+.+......+.|+.++..+...
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444445556666777666643 3344555555556677777665544
No 178
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.37 E-value=2.2e+02 Score=21.24 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 160 GAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ 199 (318)
Q Consensus 160 ~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~q 199 (318)
+++|..+..-=..-+.++..+..++..||+.+.+++.+.+
T Consensus 11 ~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 11 ESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444444444556777788888888888888877654
No 179
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.34 E-value=1.9e+02 Score=20.46 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 183 RNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 219 (318)
Q Consensus 183 rn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~Lr~~L 219 (318)
.+.+|+..+..|..++..++.....-......|+.-|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998887766666555555443
No 180
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.14 E-value=2.6e+02 Score=27.28 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHH-H----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 118 SDDLASPIKRQRD-E----LDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAA 192 (318)
Q Consensus 118 ~~~l~~~l~~q~~-E----iD~~i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlr 192 (318)
.+.+..-+.+... + +|.++.+..++ |..+.+.. ..++-..++...+++..+.+ ++.+.+..+.++|.++++
T Consensus 11 ~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~-r~~~~~~~--~l~~~~n~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~~~ 86 (455)
T 2dq0_A 11 PELVKNDLIKRGELEKVKWVDEILKLDTEW-RTKLKEIN--RLRHERNKIAVEIGKRRKKG-EPVDELLAKSREIVKRIG 86 (455)
T ss_dssp HHHHHHHHHHHTCGGGTHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHTSC-CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 021006 193 QLSVEAQVWQAKARA 207 (318)
Q Consensus 193 ql~~E~qaWQ~~A~~ 207 (318)
.+..+...-......
T Consensus 87 ~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 87 ELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 181
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=23.90 E-value=1.5e+02 Score=24.77 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 021006 207 AQEATAASLQAQLQQA 222 (318)
Q Consensus 207 ~nEa~A~~Lr~~Lqqa 222 (318)
..+..+..|...|..|
T Consensus 57 ~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 57 FCEGRIKDIEAKLSNA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3444555565555543
No 182
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.87 E-value=60 Score=32.83 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 163 EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATA 212 (318)
Q Consensus 163 E~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A 212 (318)
-.....||++.++|..++.....+.++....|..+...-+..|..-+..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~ 386 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQ 386 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888877766655555555555444444444433333
No 183
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=23.64 E-value=2.3e+02 Score=21.17 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQ 202 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ 202 (318)
-|+.+..+|.+||++++.+......=+
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344455678888888888776554433
No 184
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.42 E-value=30 Score=23.80 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=11.1
Q ss_pred CCCCCccccCceEE
Q 021006 301 ACPLCFNVRDSSVE 314 (318)
Q Consensus 301 ~CPvCr~~i~~~v~ 314 (318)
.||+|...+..+..
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 79999988877654
No 185
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.32 E-value=3.9e+02 Score=23.62 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 154 HYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 198 (318)
Q Consensus 154 ~~r~ll~avE~~~~~rLReKeeEle~a~rrn~ELEErlrql~~E~ 198 (318)
-+.+|..-++ ...+++...+++|..+..+..++++.+..+..+.
T Consensus 91 E~~aL~kEie-~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 91 ELRSLNIEED-IAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555 3345555555555555555544444444444433
No 186
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.89 E-value=3.4e+02 Score=22.85 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=13.6
Q ss_pred CCCCCCCccccCceEEE
Q 021006 299 VQACPLCFNVRDSSVEV 315 (318)
Q Consensus 299 l~~CPvCr~~i~~~v~V 315 (318)
...||+|..++..+..+
T Consensus 153 p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 153 PEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CSBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCCHHHceec
Confidence 35999999998877654
No 187
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=21.63 E-value=1.4e+02 Score=20.83 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 136 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEK 179 (318)
Q Consensus 136 i~~q~ErlR~~l~E~r~r~~r~ll~avE~~~~~rLReKeeEle~ 179 (318)
|..|..-++..|.++|+..--.-|++++ +=|+|.+.|+++
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~----~NL~EL~~E~~~ 45 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQ----ENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHH----HHHHHHHHHHHh
Confidence 3445555666666666544444445555 346666666654
No 188
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.62 E-value=33 Score=25.54 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=12.0
Q ss_pred CCCCCccccCceEEE
Q 021006 301 ACPLCFNVRDSSVEV 315 (318)
Q Consensus 301 ~CPvCr~~i~~~v~V 315 (318)
.||+|..++..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 699998888877764
No 189
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=20.82 E-value=3.4e+02 Score=27.05 Aligned_cols=102 Identities=8% Similarity=0.105 Sum_probs=56.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 021006 118 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEK--RQRHYRALLGAAEESIARLLREKEAEVEKAT-RRNAELEARAAQL 194 (318)
Q Consensus 118 ~~~l~~~l~~q~~EiD~~i~~q~ErlR~~l~E~--r~r~~r~ll~avE~~~~~rLReKeeEle~a~-rrn~ELEErlrql 194 (318)
+=+|+..|-+|...||.=|+.= ...|++. .-.-...++.+|......+=+.+..- +.+. +-..+|||..+-.
T Consensus 79 tCglad~L~kye~~V~~dl~~L----e~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n-~~~~~~s~~mle~~~~~~ 153 (461)
T 3ghg_B 79 GCQLQEALLQQERPIRNSVDEL----NNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDN-ENVVNEYSSELEKHQLYI 153 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHTHH
T ss_pred cchHHHHHHhcccchhhHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcc-hhHHHHHHHHHHHHHHHH
Confidence 4467777888888888776542 2223322 22345556666666665555554443 3333 3356788765554
Q ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 195 S--------VEAQVWQAKARAQEATAASLQAQLQQAIM 224 (318)
Q Consensus 195 ~--------~E~qaWQ~~A~~nEa~A~~Lr~~Lqqal~ 224 (318)
. .--+..+.+..++...+..|+....+...
T Consensus 154 ~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~ 191 (461)
T 3ghg_B 154 DETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQME 191 (461)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4 12244555556666666665554444333
No 190
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.77 E-value=2.7e+02 Score=20.90 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQ 202 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ 202 (318)
+++.+...|..|..++.+|..|...++
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666655554
No 191
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.55 E-value=2.8e+02 Score=20.95 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021006 176 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 215 (318)
Q Consensus 176 Ele~a~rrn~ELEErlrql~~E~qaWQ~~A~~nEa~A~~L 215 (318)
.+++......+||+...+|..|-...+.-..+.|.+...|
T Consensus 29 ~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L 68 (89)
T 3bas_A 29 DLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEEL 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344445566788887777777665544444444444433
No 192
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.40 E-value=95 Score=24.54 Aligned_cols=8 Identities=0% Similarity=0.044 Sum_probs=3.4
Q ss_pred cccccccc
Q 021006 270 ACKGCRKR 277 (318)
Q Consensus 270 ~C~vC~~~ 277 (318)
-+.|...+
T Consensus 78 G~rVaLn~ 85 (109)
T 2wg5_A 78 GARVALNQ 85 (109)
T ss_dssp TCEEEEET
T ss_pred CCEEEECC
Confidence 34444443
No 193
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=20.13 E-value=1.4e+02 Score=23.82 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021006 182 RRNAELEARAAQLSVEAQVWQ 202 (318)
Q Consensus 182 rrn~ELEErlrql~~E~qaWQ 202 (318)
.++..|.+.+.++..|...|+
T Consensus 96 ~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 96 EKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344555555666666666664
Done!