BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021007
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 38.5 bits (88), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 5   IESLSEATSGAIGSLLSTTILYPLDTCKTKYQAE------VRAHGQQKYRKLSDVLWEAI 58
           ++ L   T+  I  L    I +PLDT K + Q +      VR     +YR +   +   +
Sbjct: 3   VKFLGAGTAACIADL----ITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMV 58

Query: 59  SNGQVHSLYQGL--GTKNLQSFISQFVYFYGYSYFKRLYLKRSGNKSIGTKANLXXXXXX 116
                 SLY GL  G +   SF S  +    Y   K+ Y K S +  IG++  L      
Sbjct: 59  RTEGPRSLYNGLVAGLQRQMSFASVRIGL--YDSVKQFYTKGSEHAGIGSR--LLAGSTT 114

Query: 117 XXXXXXXXQPLDTASSRMQTSA 138
                   QP D    R Q  A
Sbjct: 115 GALAVAVAQPTDVVKVRFQAQA 136



 Score = 36.2 bits (82), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 10/196 (5%)

Query: 2   GVDIESLSEATSGAIGSLLSTTILYPLDTCKTKYQAEVRAHGQQKYRKLSDVLWEAISNG 61
           G+    L+ +T+GA    L+  +  P D  K ++QA+ RA G ++Y+   +         
Sbjct: 103 GIGSRLLAGSTTGA----LAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE 158

Query: 62  QVHSLYQGLGTKNLQSFISQFVYFYGYSYFKRLYLKRSGNKSIGTKANLXXXXXXXXXXX 121
            +  L++G      ++ I        Y   K   LK +   +     +            
Sbjct: 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK-ANLMTDDLPCHFTSAFGAGFCTT 217

Query: 122 XXXQPLDTASSRMQTSAFGK--SKGLWK-TLTEGTWSDAF-DGLGISLL-LTSNPAIQYT 176
               P+D   +R   SA G+  S G    T+       AF  G   S L L S   + + 
Sbjct: 218 VIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFV 277

Query: 177 VFDQLKRRMLKGKQNK 192
            ++QLKR ++   Q++
Sbjct: 278 TYEQLKRALMAAYQSR 293


>pdb|1ZL6|A Chain A, Crystal Structure Of Tyr350ala Mutant Of Clostridium
           Botulinum Neurotoxin E Catalytic Domain
 pdb|1ZL6|B Chain B, Crystal Structure Of Tyr350ala Mutant Of Clostridium
           Botulinum Neurotoxin E Catalytic Domain
          Length = 420

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 7/46 (15%)

Query: 33  TKYQAEVR--AHGQQKYRKLSDVLWEAISNGQVHSLYQGLGTKNLQ 76
           TK+Q + R  A GQ KY KLS++L     N  ++++ +G    NL+
Sbjct: 340 TKFQVKCRQTAIGQYKYFKLSNLL-----NDSIYNISEGYNINNLK 380


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,175,398
Number of Sequences: 62578
Number of extensions: 294204
Number of successful extensions: 533
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 5
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)