Query 021007
Match_columns 318
No_of_seqs 146 out of 1778
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 9.3E-55 3.2E-59 381.4 24.8 278 4-297 4-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.9E-55 9.9E-60 385.5 19.9 271 9-299 3-288 (303)
3 1okc_A ADP, ATP carrier protei 100.0 3.1E-34 1.1E-38 251.0 15.3 185 104-297 5-201 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.3E-33 4.5E-38 247.6 12.8 185 5-190 102-291 (303)
5 3fbl_A Putative uncharacterize 56.1 7.9 0.00027 23.9 2.3 58 252-309 4-65 (82)
6 3tgu_G UQCRQ, mitochondrial ub 19.0 65 0.0022 21.2 2.1 29 269-297 38-66 (81)
7 1pp9_G Ubiquinol-cytochrome C 16.1 1.5E+02 0.005 19.5 3.3 35 263-297 32-66 (81)
8 3cx5_H Cytochrome B-C1 complex 13.5 1.9E+02 0.0064 19.6 3.3 35 263-297 42-76 (93)
9 2acm_A Mucin-1; auto-catalytic 12.4 52 0.0018 20.1 0.3 20 48-67 40-59 (66)
10 3vjj_A P9-1; 3.00A {Rice black 12.1 2E+02 0.0069 23.8 3.7 36 215-265 273-308 (368)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=9.3e-55 Score=381.41 Aligned_cols=278 Identities=18% Similarity=0.273 Sum_probs=235.7
Q ss_pred ChhhHHHHHHHhHHHHHHHhhhchHHHHHHHHhhccccc---CccCcCcHHHHHHHHHHcCCccccccchhhhhhhhhhh
Q 021007 4 DIESLSEATSGAIGSLLSTTILYPLDTCKTKYQAEVRAH---GQQKYRKLSDVLWEAISNGQVHSLYQGLGTKNLQSFIS 80 (318)
Q Consensus 4 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 80 (318)
+.+.+.++++|+++++++.+++||+|++|+|+|++.... ....|+++++++++++++||+++||||+.+.+++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 456788999999999999999999999999999986421 23478999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhccCCCC---CChHHHHHHHHHHHHHHHhhhccHHHHHHhHhccCC---------CCchhHHHH
Q 021007 81 QFVYFYGYSYFKRLYLKRSGNKS---IGTKANLIIAATAGACTAIITQPLDTASSRMQTSAF---------GKSKGLWKT 148 (318)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~---------~~~~~~~~~ 148 (318)
.+++|.+||.+++.+....+... .+....+++|+++|+++.++++|+|++|+|+|++.. +..++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 99999999999996543222111 124568899999999999999999999999998742 122677889
Q ss_pred HHhcchhhcccccchhhhc-chhhhHHHHHHHHHHHHHHccccCCCCCCCCCcccHHHHHHHHHHHHHhHHHhcchhHHH
Q 021007 149 LTEGTWSDAFDGLGISLLL-TSNPAIQYTVFDQLKRRMLKGKQNKAGGTSPQALSAFAAFVLGAVSKSIATVLTYPAIRC 227 (318)
Q Consensus 149 ~~~~G~~~ly~G~~~~~~~-~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvv 227 (318)
+++||+++||+|+.++++| +++.+++|.+||.+++.+.+.. ..+....+++|.++|++++++++|+|||
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----------~~~~~~~~~~g~~ag~~a~~~t~P~dvv 233 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----------NVHIIVSWMIAQTVTAVAGLVSYPFDTV 233 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG----------CSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC----------CccHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 9999999999999999999 8999999999999999654321 1356778999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhhCcccccccchhhhhhHhhhhHHHHHHHHHHHHHH
Q 021007 228 KVMIQAADPNENGTEKTQPRSRKTLAGVVCAIWKREGVLGFFKGLHAQILKTVLSSALLLMIKEKIAATT 297 (318)
Q Consensus 228 ~~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~~ 297 (318)
|+|||.+.... .....|.++++|+++|+++||++|||||+.|+++|. +..+++|.+||.+|+++
T Consensus 234 ktr~q~~~~~~-----~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 234 RRRMMMQSGRK-----GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHTTTTCC-----GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHhhcCCCC-----CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999986432 123469999999999999999999999999999996 57899999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.9e-55 Score=385.49 Aligned_cols=271 Identities=18% Similarity=0.238 Sum_probs=241.8
Q ss_pred HHHHHHhHHHHHHHhhhchHHHHHHHHhhccccc------CccCcCcHHHHHHHHHHcCCccccccchhhhhhhhhhhhh
Q 021007 9 SEATSGAIGSLLSTTILYPLDTCKTKYQAEVRAH------GQQKYRKLSDVLWEAISNGQVHSLYQGLGTKNLQSFISQF 82 (318)
Q Consensus 9 ~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~------~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 82 (318)
.++++|++|++++.+++||+|++|+|+|++.... ....|+++++++++++++||+++||||+.+.+++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999986422 1347899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCChHHHHHHHHHHHHHHHhhhccHHHHHHhHhccCC--------CCchhHHHHHHhcch
Q 021007 83 VYFYGYSYFKRLYLKRSGNKSIGTKANLIIAATAGACTAIITQPLDTASSRMQTSAF--------GKSKGLWKTLTEGTW 154 (318)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~--------~~~~~~~~~~~~~G~ 154 (318)
++|.+||.+++.+....+ ..+....+++|+++|+++.++++|+|++|+|+|++.. +..+++++++++||+
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 999999999998865422 3677889999999999999999999999999999763 122677889999999
Q ss_pred hhcccccchhhhc-chhhhHHHHHHHHHHHHHHccccCCCCCCCCCcccHHHHHHHHHHHHHhHHHhcchhHHHHHHHHh
Q 021007 155 SDAFDGLGISLLL-TSNPAIQYTVFDQLKRRMLKGKQNKAGGTSPQALSAFAAFVLGAVSKSIATVLTYPAIRCKVMIQA 233 (318)
Q Consensus 155 ~~ly~G~~~~~~~-~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvv~~r~q~ 233 (318)
++||+|+.++++| +++.+++|.+||.+++.+.+... ...+....+++|.+||++++++++|+||||+|||.
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~--------~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~ 232 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL--------MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMN 232 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS--------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999 89999999999999998765421 12356788999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHHHhhCcccccccchhhhhhHhhhhHHHHHHHHHHHHHHHH
Q 021007 234 ADPNENGTEKTQPRSRKTLAGVVCAIWKREGVLGFFKGLHAQILKTVLSSALLLMIKEKIAATTWV 299 (318)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~~~~ 299 (318)
+.... |.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+++..
T Consensus 233 ~~~~~----------y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 233 SALGQ----------YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CCSSS----------CCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred ccccc----------cCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 87533 999999999999999999999999999999999999999999999987753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.1e-34 Score=251.04 Aligned_cols=185 Identities=13% Similarity=0.209 Sum_probs=157.3
Q ss_pred CChHHHHHHHHHHHHHHHhhhccHHHHHHhHhccCC-----------CCchhHHHHHHhcchhhcccccchhhhc-chhh
Q 021007 104 IGTKANLIIAATAGACTAIITQPLDTASSRMQTSAF-----------GKSKGLWKTLTEGTWSDAFDGLGISLLL-TSNP 171 (318)
Q Consensus 104 ~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~-----------~~~~~~~~~~~~~G~~~ly~G~~~~~~~-~~~~ 171 (318)
.+.+..+++|+++|+++.++++|+|++|+|+|++.. +..+++++++++||+++||+|+.+.+++ ++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 345678999999999999999999999999998752 1226677889999999999999999999 8999
Q ss_pred hHHHHHHHHHHHHHHccccCCCCCCCCCcccHHHHHHHHHHHHHhHHHhcchhHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 021007 172 AIQYTVFDQLKRRMLKGKQNKAGGTSPQALSAFAAFVLGAVSKSIATVLTYPAIRCKVMIQAADPNENGTEKTQPRSRKT 251 (318)
Q Consensus 172 ~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvv~~r~q~~~~~~~~~~~~~~~~~~~ 251 (318)
+++|++||.+++.+......+ .....+....+++|.+||++++++++|+|+||+|||.+.... .....|.+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~----~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-----~~~~~~~~ 155 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRH----KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-----AAQREFTG 155 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-----TTTCSCSS
T ss_pred HHHHHHHHHHHHHhccccCcc----cchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-----CcCcCCCC
Confidence 999999999999655432111 111124567899999999999999999999999999986422 12346899
Q ss_pred HHHHHHHHHHhhCcccccccchhhhhhHhhhhHHHHHHHHHHHHHH
Q 021007 252 LAGVVCAIWKREGVLGFFKGLHAQILKTVLSSALLLMIKEKIAATT 297 (318)
Q Consensus 252 ~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~~ 297 (318)
+++|+++++++||++|||||+.|+++|.+|..++.|.+||.+++++
T Consensus 156 ~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 201 (297)
T 1okc_A 156 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201 (297)
T ss_dssp HHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999876
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-33 Score=247.64 Aligned_cols=185 Identities=22% Similarity=0.322 Sum_probs=163.8
Q ss_pred hhhHHHHHHHhHHHHHHHhhhchHHHHHHHHhhcccccCccCcCcHHHHHHHHHHcCCccccccchhhhhhhhhhhhhHH
Q 021007 5 IESLSEATSGAIGSLLSTTILYPLDTCKTKYQAEVRAHGQQKYRKLSDVLWEAISNGQVHSLYQGLGTKNLQSFISQFVY 84 (318)
Q Consensus 5 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~ 84 (318)
.+....+++|+++++++.++++|+|++|+|+|++........|++.++++++|+++||+++||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999986443445789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCChHHHHHHHHHHHHHHHhhhccHHHHHHhHhccCCCCc----hhHHHHHHhcchhhcccc
Q 021007 85 FYGYSYFKRLYLKRSGNKSIGTKANLIIAATAGACTAIITQPLDTASSRMQTSAFGKS----KGLWKTLTEGTWSDAFDG 160 (318)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~~~~----~~~~~~~~~~G~~~ly~G 160 (318)
|.+||.+++.+..... .+.+....+++|++||++++++++|+|++|+|+|++....+ +++++++++||+++||+|
T Consensus 182 f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG 260 (303)
T 2lck_A 182 LVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKG 260 (303)
T ss_dssp HHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSC
T ss_pred HHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhcc
Confidence 9999999998865432 24566788999999999999999999999999999865444 667788999999999999
Q ss_pred cchhhhc-chhhhHHHHHHHHHHHHHHcccc
Q 021007 161 LGISLLL-TSNPAIQYTVFDQLKRRMLKGKQ 190 (318)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~y~~l~~~~~~~~~ 190 (318)
+.|+++| +|..+++|.+||.+++.+.+...
T Consensus 261 ~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 261 FMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999 89999999999999987765443
No 5
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=56.10 E-value=7.9 Score=23.88 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhCc----ccccccchhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021007 252 LAGVVCAIWKREGV----LGFFKGLHAQILKTVLSSALLLMIKEKIAATTWVLILAIRRYLF 309 (318)
Q Consensus 252 ~~~~~~~i~~~eG~----~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~~~~~~~~~~~~~~ 309 (318)
..-.++++.+.+|+ .|.|-.|+-.++++-+-+-..-..-|++.++.+-++.+...+++
T Consensus 4 lrlaikeicktdgipnikwgmyiafgekllksylkmkagsassdmiaeyinnaisafssrtg 65 (82)
T 3fbl_A 4 LRLAIKEICKTDGIPNIKWGMYIAFGEKLLKSYLKMKAGSASSDMIAEYINNAISAFSSRTG 65 (82)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHccCCCCcchhHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHhhccc
Confidence 45568999999996 67888888888888777666667778888888877776655544
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=19.01 E-value=65 Score=21.21 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=22.9
Q ss_pred cccchhhhhhHhhhhHHHHHHHHHHHHHH
Q 021007 269 FKGLHAQILKTVLSSALLLMIKEKIAATT 297 (318)
Q Consensus 269 yrG~~~~~~~~~~~~~i~~~~ye~~~~~~ 297 (318)
+|-+.-+++..+|..++.+.+|+...+..
T Consensus 38 ~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 38 WRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 33344567889999999999999988765
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=16.15 E-value=1.5e+02 Score=19.47 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=27.4
Q ss_pred hCcccccccchhhhhhHhhhhHHHHHHHHHHHHHH
Q 021007 263 EGVLGFFKGLHAQILKTVLSSALLLMIKEKIAATT 297 (318)
Q Consensus 263 eG~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~~ 297 (318)
.|+...+|-+.-+++..+|..++.+.+|+...+..
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 34455566677778889999999999999988765
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=13.50 E-value=1.9e+02 Score=19.56 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=29.3
Q ss_pred hCcccccccchhhhhhHhhhhHHHHHHHHHHHHHH
Q 021007 263 EGVLGFFKGLHAQILKTVLSSALLLMIKEKIAATT 297 (318)
Q Consensus 263 eG~~glyrG~~~~~~~~~~~~~i~~~~ye~~~~~~ 297 (318)
.|+...+|-+.-+++..+|..++.+.+|+..++..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 46667777777888899999999999999988866
No 9
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=12.41 E-value=52 Score=20.12 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.1
Q ss_pred CcHHHHHHHHHHcCCccccc
Q 021007 48 RKLSDVLWEAISNGQVHSLY 67 (318)
Q Consensus 48 ~~~~~~~~~i~~~~G~~~ly 67 (318)
+++.+.+..|++++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788889999999999886
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=12.05 E-value=2e+02 Score=23.76 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=25.0
Q ss_pred HhHHHhcchhHHHHHHHHhcCCCCCCCCCCCCCCCCCHHHHHHHHHHhhCc
Q 021007 215 SIATVLTYPAIRCKVMIQAADPNENGTEKTQPRSRKTLAGVVCAIWKREGV 265 (318)
Q Consensus 215 ~~~~~~t~P~dvv~~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~ 265 (318)
.++++=.||||.+|-.++.-- ++...+++.++++|.
T Consensus 273 qLaTFdnypfdllRfqL~Sli---------------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI---------------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC---------------CCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhc---------------cChHHHHHHHHhcCc
Confidence 356677899999876654433 344567888888874
Done!