BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021008
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction
           Intermediate
 pdb|3O31|B Chain B, E81q Mutant Of Mtnas In Complex With A Reaction
           Intermediate
          Length = 296

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 19/205 (9%)

Query: 88  ENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRF--PTKIAFIGSGPLPLTSIVLAINHL 145
           ++P   L  F +Y  Y++L + E  +      RF    +  FIG GPLPLT I+L+  H+
Sbjct: 91  DSPWETLRSFYFYPRYLELLKNEAAL-----GRFRRGERAVFIGGGPLPLTGILLS--HV 143

Query: 146 TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM 205
                +  +I+P     +  ++     L        T    V   L +++V+ +AAL   
Sbjct: 144 YGMRVNVVEIEPDIAELSRKVIEG---LGVDGVNVITGDETVIDGL-EFDVLMVAALA-- 197

Query: 206 DKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVIN 265
             + K RV  ++ +Y+     ++ R+  G RA LY  V   D+ GF    V  P+ +V N
Sbjct: 198 --EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAGVVLPSGKVNN 255

Query: 266 SVVLARKYVMPSLEQQDQLSPKILP 290
           + VL  K   P  E   +L  K +P
Sbjct: 256 TSVLVFK--CPKGELNSKLEGKPIP 278


>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas
 pdb|3FPG|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas
 pdb|3FPH|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
           L-Glutamate
 pdb|3FPH|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
           L-Glutamate
 pdb|3FPJ|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
           S- Adenosylmethionine
 pdb|3FPJ|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
           S- Adenosylmethionine
          Length = 298

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)

Query: 88  ENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRF--PTKIAFIGSGPLPLTSIVLAINHL 145
           ++P   L  F +Y  Y++L + E         RF    +  FIG GPLPLT I+L+  H+
Sbjct: 92  DSPWETLRSFYFYPRYLELLKNE-----AALGRFRRGERAVFIGGGPLPLTGILLS--HV 144

Query: 146 TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM 205
                +  +I+P     +  ++     L        T    V   L +++V+ +AAL   
Sbjct: 145 YGMRVNVVEIEPDIAELSRKVIEG---LGVDGVNVITGDETVIDGL-EFDVLMVAALA-- 198

Query: 206 DKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVIN 265
             + K RV  ++ +Y+     ++ R+  G RA LY  V   D+ GF    V  P+ +V N
Sbjct: 199 --EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAGVVLPSGKVNN 256

Query: 266 SVVLARK 272
           + VL  K
Sbjct: 257 TSVLVFK 263


>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With
           Thermonicotianamine
 pdb|3FPE|B Chain B, Crystal Structure Of Mtnas In Complex With
           Thermonicotianamine
 pdb|3FPF|A Chain A, Crystal Structure Of Mtnas In Complex With Mta And Tna
 pdb|3FPF|B Chain B, Crystal Structure Of Mtnas In Complex With Mta And Tna
          Length = 298

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)

Query: 88  ENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRF--PTKIAFIGSGPLPLTSIVLAINHL 145
           ++P   L  F +Y  Y++L + E         RF    +  FIG GPLPLT I+L+  H+
Sbjct: 92  DSPWETLRSFYFYPRYLELLKNE-----AALGRFRRGERAVFIGGGPLPLTGILLS--HV 144

Query: 146 TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM 205
                +  +I+P     +  ++     L        T    V   L +++V+ +AAL   
Sbjct: 145 YGMRVNVVEIEPDIAELSRKVIEG---LGVDGVNVITGDETVIDGL-EFDVLMVAALA-- 198

Query: 206 DKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVIN 265
             + K RV  ++ +Y+     ++ R+  G RA LY  V   D+ GF    V  P+ +V N
Sbjct: 199 --EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAGVVLPSGKVNN 256

Query: 266 SVVLARK 272
           + VL  K
Sbjct: 257 TSVLVFK 263


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,904,508
Number of Sequences: 62578
Number of extensions: 330210
Number of successful extensions: 806
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 4
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)