Query 021008
Match_columns 318
No_of_seqs 284 out of 938
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:53:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03075 nicotianamine synthas 100.0 5.1E-77 1.1E-81 562.9 26.4 292 1-293 4-296 (296)
2 PF03059 NAS: Nicotianamine sy 100.0 7E-75 1.5E-79 543.7 16.1 270 4-274 4-273 (276)
3 PF12847 Methyltransf_18: Meth 99.8 7.6E-18 1.6E-22 135.5 11.5 107 121-231 1-111 (112)
4 PLN02244 tocopherol O-methyltr 99.7 9.4E-16 2E-20 148.5 17.4 163 57-231 53-223 (340)
5 PF01209 Ubie_methyltran: ubiE 99.7 1.6E-16 3.5E-21 146.6 10.4 109 119-231 45-153 (233)
6 COG2226 UbiE Methylase involve 99.7 5E-16 1.1E-20 143.7 12.5 107 120-231 50-156 (238)
7 PF01596 Methyltransf_3: O-met 99.6 4.6E-16 9.9E-21 141.1 8.6 107 120-232 44-156 (205)
8 COG4122 Predicted O-methyltran 99.6 1.1E-15 2.5E-20 139.5 11.1 107 120-232 58-167 (219)
9 PF08241 Methyltransf_11: Meth 99.6 3E-15 6.5E-20 115.5 10.7 95 126-229 1-95 (95)
10 PF13847 Methyltransf_31: Meth 99.6 4.3E-15 9.2E-20 127.0 12.6 110 120-233 2-112 (152)
11 PRK15451 tRNA cmo(5)U34 methyl 99.6 9E-15 1.9E-19 135.4 15.2 129 95-231 34-164 (247)
12 PLN02781 Probable caffeoyl-CoA 99.6 2.7E-15 5.9E-20 138.3 11.4 107 120-232 67-179 (234)
13 PTZ00098 phosphoethanolamine N 99.6 2E-14 4.4E-19 134.5 15.4 142 119-267 50-211 (263)
14 PLN02233 ubiquinone biosynthes 99.6 2.7E-14 5.9E-19 133.5 16.2 110 120-231 72-182 (261)
15 PLN02589 caffeoyl-CoA O-methyl 99.6 6.1E-15 1.3E-19 137.3 10.9 107 120-232 78-191 (247)
16 PLN02476 O-methyltransferase 99.6 8.8E-15 1.9E-19 138.2 11.6 107 120-232 117-229 (278)
17 TIGR00740 methyltransferase, p 99.6 5.9E-14 1.3E-18 128.8 15.9 127 97-231 33-161 (239)
18 PRK11036 putative S-adenosyl-L 99.6 2.4E-14 5.2E-19 132.8 11.8 106 120-231 43-149 (255)
19 TIGR03840 TMPT_Se_Te thiopurin 99.6 7.2E-14 1.6E-18 127.3 14.4 137 80-230 3-151 (213)
20 TIGR02752 MenG_heptapren 2-hep 99.6 6.2E-14 1.3E-18 127.3 13.7 108 120-231 44-151 (231)
21 TIGR00477 tehB tellurite resis 99.5 8.9E-14 1.9E-18 124.5 13.6 103 120-230 29-132 (195)
22 PRK00107 gidB 16S rRNA methylt 99.5 7.8E-14 1.7E-18 124.8 12.5 103 120-232 44-146 (187)
23 PF02353 CMAS: Mycolic acid cy 99.5 1.5E-13 3.3E-18 129.7 14.7 106 119-231 60-166 (273)
24 PRK11873 arsM arsenite S-adeno 99.5 1.2E-13 2.5E-18 129.0 13.0 108 120-231 76-183 (272)
25 PF13649 Methyltransf_25: Meth 99.5 6E-14 1.3E-18 111.9 8.3 97 125-225 1-101 (101)
26 PLN02396 hexaprenyldihydroxybe 99.5 1.1E-13 2.3E-18 133.6 11.0 107 120-232 130-236 (322)
27 PRK13255 thiopurine S-methyltr 99.5 3.5E-13 7.7E-18 123.2 13.7 135 81-229 7-153 (218)
28 TIGR02469 CbiT precorrin-6Y C5 99.5 6.9E-13 1.5E-17 107.7 13.4 103 120-230 18-121 (124)
29 PRK11207 tellurite resistance 99.5 3.7E-13 8.1E-18 120.6 12.6 103 120-229 29-132 (197)
30 PRK12335 tellurite resistance 99.5 6.1E-13 1.3E-17 125.8 14.1 102 120-229 119-221 (287)
31 TIGR00138 gidB 16S rRNA methyl 99.5 1.1E-12 2.4E-17 116.5 14.3 102 121-232 42-143 (181)
32 PRK14103 trans-aconitate 2-met 99.5 7.7E-13 1.7E-17 122.6 13.1 100 119-231 27-126 (255)
33 PRK13944 protein-L-isoaspartat 99.5 1.2E-12 2.6E-17 118.1 13.8 106 120-234 71-176 (205)
34 PRK13256 thiopurine S-methyltr 99.5 1.4E-12 3E-17 120.1 14.1 138 80-231 12-163 (226)
35 smart00828 PKS_MT Methyltransf 99.4 6.6E-13 1.4E-17 120.0 11.7 104 123-231 1-104 (224)
36 PRK04457 spermidine synthase; 99.4 6.1E-13 1.3E-17 124.7 11.7 148 120-273 65-217 (262)
37 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.7E-13 5.8E-18 124.8 8.5 104 120-231 58-161 (243)
38 PRK08317 hypothetical protein; 99.4 2E-12 4.4E-17 116.0 14.0 109 119-232 17-125 (241)
39 TIGR00080 pimt protein-L-isoas 99.4 1.2E-12 2.6E-17 118.6 12.4 103 119-231 75-177 (215)
40 PRK10258 biotin biosynthesis p 99.4 1.7E-12 3.7E-17 119.6 13.3 100 120-231 41-140 (251)
41 PRK13942 protein-L-isoaspartat 99.4 2E-12 4.3E-17 117.4 13.3 103 119-231 74-176 (212)
42 PLN02336 phosphoethanolamine N 99.4 2.1E-12 4.6E-17 129.7 14.0 104 120-231 265-369 (475)
43 PRK01683 trans-aconitate 2-met 99.4 2.7E-12 5.9E-17 118.6 13.6 101 120-231 30-130 (258)
44 KOG1540 Ubiquinone biosynthesi 99.4 3E-12 6.5E-17 118.7 12.7 109 119-231 98-214 (296)
45 PRK00377 cbiT cobalt-precorrin 99.4 3.9E-12 8.3E-17 113.9 12.8 107 119-231 38-145 (198)
46 TIGR02716 C20_methyl_CrtF C-20 99.4 4E-12 8.7E-17 120.9 13.5 106 120-231 148-254 (306)
47 TIGR00091 tRNA (guanine-N(7)-) 99.4 2.6E-12 5.7E-17 114.8 11.0 109 120-232 15-133 (194)
48 PRK00121 trmB tRNA (guanine-N( 99.4 3.5E-12 7.6E-17 114.9 11.9 108 120-231 39-156 (202)
49 PF13659 Methyltransf_26: Meth 99.4 2.3E-12 4.9E-17 104.4 9.6 105 122-230 1-114 (117)
50 PF05724 TPMT: Thiopurine S-me 99.4 2.9E-12 6.2E-17 117.3 9.9 135 79-227 5-151 (218)
51 PRK06922 hypothetical protein; 99.4 1.3E-11 2.8E-16 127.8 15.7 107 120-231 417-537 (677)
52 PRK08287 cobalt-precorrin-6Y C 99.4 1.3E-11 2.7E-16 109.3 13.3 102 120-231 30-131 (187)
53 COG2230 Cfa Cyclopropane fatty 99.4 7.1E-12 1.5E-16 118.5 12.3 106 119-231 70-176 (283)
54 PF03848 TehB: Tellurite resis 99.4 1.6E-11 3.5E-16 110.4 13.9 104 120-231 29-133 (192)
55 COG4106 Tam Trans-aconitate me 99.3 4.1E-12 8.9E-17 115.3 9.0 111 111-232 20-130 (257)
56 smart00138 MeTrc Methyltransfe 99.3 1.5E-11 3.4E-16 115.3 13.2 115 120-235 98-246 (264)
57 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.5E-11 3.2E-16 119.5 13.0 104 120-231 112-215 (340)
58 COG2242 CobL Precorrin-6B meth 99.3 2.7E-11 5.8E-16 108.0 13.4 117 106-231 17-135 (187)
59 PRK00216 ubiE ubiquinone/menaq 99.3 3.9E-11 8.4E-16 108.2 14.4 109 120-231 50-158 (239)
60 PRK07402 precorrin-6B methylas 99.3 3E-11 6.6E-16 107.7 13.0 104 120-232 39-143 (196)
61 KOG1270 Methyltransferases [Co 99.3 3.8E-12 8.2E-17 118.4 7.2 102 122-231 90-195 (282)
62 TIGR02072 BioC biotin biosynth 99.3 3.6E-11 7.9E-16 108.1 13.4 103 120-231 33-135 (240)
63 PRK15068 tRNA mo(5)U34 methylt 99.3 2.9E-11 6.3E-16 116.6 13.5 106 120-231 121-226 (322)
64 TIGR03587 Pse_Me-ase pseudamin 99.3 4.2E-11 9.1E-16 108.3 13.5 100 120-231 42-142 (204)
65 TIGR02021 BchM-ChlM magnesium 99.3 3.8E-11 8.3E-16 108.6 13.0 103 120-230 54-157 (219)
66 PRK11088 rrmA 23S rRNA methylt 99.3 3.5E-11 7.6E-16 112.8 13.0 98 119-232 83-182 (272)
67 KOG1663 O-methyltransferase [S 99.3 2.9E-11 6.2E-16 110.6 11.9 106 120-231 72-183 (237)
68 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1E-10 2.2E-15 104.4 14.8 105 120-231 38-143 (223)
69 PF08242 Methyltransf_12: Meth 99.3 2.9E-12 6.2E-17 101.4 3.7 97 126-227 1-99 (99)
70 PRK11705 cyclopropane fatty ac 99.3 5.6E-11 1.2E-15 117.2 13.6 102 119-231 165-267 (383)
71 PRK00811 spermidine synthase; 99.2 6.3E-11 1.4E-15 112.2 12.3 112 120-233 75-193 (283)
72 PF05175 MTS: Methyltransferas 99.2 1.1E-10 2.5E-15 102.1 12.6 105 120-229 30-138 (170)
73 TIGR03533 L3_gln_methyl protei 99.2 1.3E-10 2.7E-15 110.3 13.3 110 120-233 120-253 (284)
74 PRK07580 Mg-protoporphyrin IX 99.2 2.9E-10 6.3E-15 102.7 14.9 103 120-230 62-165 (230)
75 PRK00312 pcm protein-L-isoaspa 99.2 1.9E-10 4.1E-15 103.7 13.6 101 119-232 76-176 (212)
76 PF05401 NodS: Nodulation prot 99.2 1.9E-10 4E-15 103.5 13.2 104 120-232 42-147 (201)
77 PLN02366 spermidine synthase 99.2 1.1E-10 2.4E-15 112.1 12.3 110 120-232 90-207 (308)
78 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.4E-10 3E-15 114.4 13.1 109 120-232 121-236 (390)
79 TIGR03438 probable methyltrans 99.2 2E-10 4.3E-15 109.6 13.5 123 107-231 43-177 (301)
80 COG2519 GCD14 tRNA(1-methylade 99.2 1.5E-10 3.2E-15 107.5 12.0 105 119-232 92-196 (256)
81 TIGR00452 methyltransferase, p 99.2 3.8E-10 8.2E-15 108.7 15.2 105 119-231 119-225 (314)
82 PRK00517 prmA ribosomal protei 99.2 2.3E-10 5.1E-15 106.2 12.9 111 104-231 103-213 (250)
83 PRK13943 protein-L-isoaspartat 99.2 3.2E-10 7E-15 109.5 14.2 103 119-231 78-180 (322)
84 PF01135 PCMT: Protein-L-isoas 99.2 7.4E-11 1.6E-15 107.4 9.1 104 119-232 70-173 (209)
85 PRK05785 hypothetical protein; 99.2 2.6E-10 5.6E-15 104.6 12.8 92 120-225 50-141 (226)
86 PF13489 Methyltransf_23: Meth 99.2 1.3E-10 2.7E-15 98.3 9.8 96 120-233 21-117 (161)
87 TIGR00406 prmA ribosomal prote 99.2 3.8E-10 8.3E-15 107.0 14.1 117 104-231 143-259 (288)
88 PRK04266 fibrillarin; Provisio 99.2 3.2E-10 6.9E-15 104.4 13.1 103 119-230 70-175 (226)
89 PRK11805 N5-glutamine S-adenos 99.2 2.8E-10 6.1E-15 109.1 13.2 108 122-233 134-265 (307)
90 PRK14903 16S rRNA methyltransf 99.2 1.8E-10 4E-15 115.2 12.4 110 119-231 235-366 (431)
91 PRK14901 16S rRNA methyltransf 99.2 1.5E-10 3.2E-15 115.8 11.6 110 119-231 250-384 (434)
92 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.7E-10 5.8E-15 106.8 12.7 110 119-231 69-199 (264)
93 TIGR03534 RF_mod_PrmC protein- 99.2 3.7E-10 8E-15 103.2 13.3 108 120-232 86-218 (251)
94 PRK01581 speE spermidine synth 99.2 2.2E-10 4.7E-15 111.9 12.3 111 119-232 148-269 (374)
95 PRK05134 bifunctional 3-demeth 99.2 2.7E-10 5.8E-15 103.7 11.9 104 120-231 47-151 (233)
96 PRK14902 16S rRNA methyltransf 99.2 2E-10 4.4E-15 115.0 12.0 109 120-231 249-379 (444)
97 PRK06202 hypothetical protein; 99.2 4.3E-10 9.2E-15 102.7 12.7 104 120-231 59-166 (232)
98 TIGR00537 hemK_rel_arch HemK-r 99.1 5.5E-10 1.2E-14 98.1 12.5 103 120-231 18-140 (179)
99 TIGR00563 rsmB ribosomal RNA s 99.1 3.2E-10 6.8E-15 113.1 12.2 110 119-231 236-368 (426)
100 COG2518 Pcm Protein-L-isoaspar 99.1 3.4E-10 7.5E-15 102.7 11.1 123 102-237 53-175 (209)
101 PRK15001 SAM-dependent 23S rib 99.1 7.3E-10 1.6E-14 109.1 14.2 106 122-231 229-340 (378)
102 PLN02336 phosphoethanolamine N 99.1 4.9E-10 1.1E-14 112.7 13.2 104 120-231 36-142 (475)
103 PRK14904 16S rRNA methyltransf 99.1 6.5E-10 1.4E-14 111.5 13.6 108 120-231 249-377 (445)
104 TIGR00536 hemK_fam HemK family 99.1 8.9E-10 1.9E-14 104.2 13.6 107 123-233 116-246 (284)
105 PRK10901 16S rRNA methyltransf 99.1 8.1E-10 1.7E-14 110.3 13.9 108 119-231 242-372 (427)
106 KOG1271 Methyltransferases [Ge 99.1 8.3E-10 1.8E-14 98.2 12.2 108 121-231 67-181 (227)
107 cd02440 AdoMet_MTases S-adenos 99.1 1E-09 2.3E-14 83.4 11.4 102 124-230 1-103 (107)
108 COG4123 Predicted O-methyltran 99.1 5.2E-10 1.1E-14 104.1 10.9 109 120-231 43-170 (248)
109 PRK14968 putative methyltransf 99.1 1.9E-09 4.2E-14 94.0 13.1 106 120-231 22-148 (188)
110 TIGR01177 conserved hypothetic 99.1 1.3E-09 2.8E-14 105.1 12.7 108 120-233 181-296 (329)
111 PLN02823 spermine synthase 99.1 1E-09 2.3E-14 106.5 11.6 109 120-231 102-220 (336)
112 PRK14967 putative methyltransf 99.1 2.4E-09 5.3E-14 97.5 13.4 104 120-230 35-158 (223)
113 TIGR00417 speE spermidine synt 99.1 1.5E-09 3.2E-14 102.1 12.3 111 120-232 71-187 (270)
114 PF08704 GCD14: tRNA methyltra 99.1 9.9E-10 2.2E-14 102.4 10.4 106 119-232 38-147 (247)
115 PRK01544 bifunctional N5-gluta 99.0 1.6E-09 3.5E-14 110.5 12.4 107 121-231 138-269 (506)
116 PRK11188 rrmJ 23S rRNA methylt 99.0 2.1E-09 4.6E-14 97.5 11.5 122 120-261 50-192 (209)
117 TIGR01983 UbiG ubiquinone bios 99.0 2E-09 4.4E-14 96.9 11.2 105 120-231 44-149 (224)
118 COG0421 SpeE Spermidine syntha 99.0 3E-09 6.4E-14 101.0 12.7 110 120-231 75-190 (282)
119 PRK09489 rsmC 16S ribosomal RN 99.0 3.8E-09 8.3E-14 102.8 13.7 105 120-231 195-303 (342)
120 PRK15128 23S rRNA m(5)C1962 me 99.0 3.9E-09 8.4E-14 104.7 13.4 109 120-232 219-340 (396)
121 PF01564 Spermine_synth: Sperm 99.0 1.8E-09 3.8E-14 100.6 10.2 110 120-231 75-191 (246)
122 KOG4300 Predicted methyltransf 99.0 8.7E-10 1.9E-14 99.8 7.8 137 121-264 76-220 (252)
123 PLN02585 magnesium protoporphy 99.0 6.5E-09 1.4E-13 100.2 14.1 101 121-230 144-249 (315)
124 TIGR00438 rrmJ cell division p 99.0 2E-09 4.4E-14 95.3 9.7 98 120-231 31-146 (188)
125 PRK09328 N5-glutamine S-adenos 99.0 5.5E-09 1.2E-13 97.1 12.8 107 120-231 107-238 (275)
126 PRK03612 spermidine synthase; 99.0 2.3E-09 5.1E-14 109.6 10.9 110 120-232 296-416 (521)
127 PF06325 PrmA: Ribosomal prote 99.0 4.1E-09 8.9E-14 100.7 11.4 114 103-230 144-258 (295)
128 PRK11783 rlmL 23S rRNA m(2)G24 99.0 3.1E-09 6.6E-14 112.3 11.1 107 120-231 537-656 (702)
129 PRK14966 unknown domain/N5-glu 99.0 7.4E-09 1.6E-13 103.0 13.0 108 120-232 250-382 (423)
130 PLN02232 ubiquinone biosynthes 99.0 2.1E-09 4.5E-14 93.4 8.1 80 151-231 1-81 (160)
131 PTZ00146 fibrillarin; Provisio 98.9 9.4E-09 2E-13 97.9 12.9 146 77-230 86-236 (293)
132 TIGR03704 PrmC_rel_meth putati 98.9 1.2E-08 2.7E-13 95.1 12.4 130 121-261 86-243 (251)
133 PF00891 Methyltransf_2: O-met 98.9 9.5E-09 2.1E-13 94.3 11.4 98 120-231 99-199 (241)
134 COG2264 PrmA Ribosomal protein 98.9 1.1E-08 2.3E-13 97.7 11.7 117 104-231 146-263 (300)
135 PRK03522 rumB 23S rRNA methylu 98.8 2.2E-08 4.8E-13 96.1 11.6 100 120-229 172-272 (315)
136 COG2890 HemK Methylase of poly 98.8 3.4E-08 7.3E-13 93.7 12.0 105 124-234 113-241 (280)
137 smart00650 rADc Ribosomal RNA 98.8 4.1E-08 8.8E-13 85.6 11.5 100 120-231 12-113 (169)
138 PF08003 Methyltransf_9: Prote 98.8 6.1E-08 1.3E-12 92.5 12.3 125 111-242 104-233 (315)
139 PRK10909 rsmD 16S rRNA m(2)G96 98.8 5.2E-08 1.1E-12 88.2 10.7 106 120-232 52-160 (199)
140 PRK00536 speE spermidine synth 98.8 7.1E-08 1.5E-12 90.8 12.0 103 119-234 70-174 (262)
141 COG2813 RsmC 16S RNA G1207 met 98.8 9.6E-08 2.1E-12 91.0 12.9 104 120-229 157-264 (300)
142 PF02390 Methyltransf_4: Putat 98.8 4.5E-08 9.8E-13 88.1 10.1 107 123-233 19-135 (195)
143 PLN02672 methionine S-methyltr 98.8 5.7E-08 1.2E-12 106.2 12.5 110 122-234 119-281 (1082)
144 PRK13168 rumA 23S rRNA m(5)U19 98.8 9.1E-08 2E-12 96.0 13.1 100 120-230 296-399 (443)
145 PRK11933 yebU rRNA (cytosine-C 98.7 7.4E-08 1.6E-12 97.5 11.7 110 119-231 111-242 (470)
146 TIGR02081 metW methionine bios 98.7 8.1E-08 1.8E-12 85.5 9.8 91 120-223 12-104 (194)
147 TIGR00479 rumA 23S rRNA (uraci 98.7 1.8E-07 4E-12 93.3 12.0 100 120-229 291-394 (431)
148 PF13578 Methyltransf_24: Meth 98.6 1E-08 2.2E-13 82.3 2.0 101 126-231 1-105 (106)
149 KOG1269 SAM-dependent methyltr 98.6 7.8E-08 1.7E-12 94.4 8.5 161 58-231 54-215 (364)
150 PF02527 GidB: rRNA small subu 98.6 4.4E-07 9.6E-12 81.2 12.3 101 122-232 49-149 (184)
151 COG0220 Predicted S-adenosylme 98.6 2.3E-07 4.9E-12 85.7 10.4 108 122-233 49-166 (227)
152 TIGR02085 meth_trns_rumB 23S r 98.6 3.3E-07 7.1E-12 90.2 11.8 101 120-230 232-333 (374)
153 TIGR00095 RNA methyltransferas 98.6 5.8E-07 1.3E-11 80.5 11.6 107 120-233 48-161 (189)
154 PF03291 Pox_MCEL: mRNA cappin 98.6 5.9E-07 1.3E-11 87.2 11.7 109 121-232 62-187 (331)
155 PF07021 MetW: Methionine bios 98.6 3E-07 6.5E-12 82.6 8.7 91 119-222 11-103 (193)
156 PRK10611 chemotaxis methyltran 98.5 3.9E-07 8.5E-12 86.9 9.5 115 121-235 115-266 (287)
157 PF09445 Methyltransf_15: RNA 98.5 1.6E-07 3.4E-12 82.6 6.2 74 123-201 1-77 (163)
158 KOG2361 Predicted methyltransf 98.5 5.6E-07 1.2E-11 83.3 9.5 118 106-231 56-183 (264)
159 PF05185 PRMT5: PRMT5 arginine 98.5 6.7E-07 1.5E-11 90.1 11.0 129 97-228 160-294 (448)
160 PRK11727 23S rRNA mA1618 methy 98.5 6.3E-07 1.4E-11 86.7 10.2 121 74-199 66-195 (321)
161 PHA03411 putative methyltransf 98.5 6.3E-07 1.4E-11 84.9 9.9 102 120-231 63-183 (279)
162 PF02475 Met_10: Met-10+ like- 98.5 9.4E-07 2E-11 80.1 9.9 114 105-228 86-199 (200)
163 COG1092 Predicted SAM-dependen 98.4 1.4E-06 3E-11 86.3 11.0 109 120-233 216-338 (393)
164 PF06080 DUF938: Protein of un 98.4 2.4E-06 5.1E-11 77.6 11.5 117 112-231 16-141 (204)
165 PTZ00338 dimethyladenosine tra 98.4 1.1E-06 2.3E-11 84.1 9.4 74 119-199 34-107 (294)
166 COG2263 Predicted RNA methylas 98.4 3E-06 6.6E-11 76.0 11.5 73 119-200 43-115 (198)
167 PF01739 CheR: CheR methyltran 98.4 1.2E-06 2.7E-11 79.1 9.1 116 120-235 30-179 (196)
168 PHA03412 putative methyltransf 98.4 2.8E-06 6.1E-11 78.9 11.1 97 121-226 49-158 (241)
169 PF12147 Methyltransf_20: Puta 98.4 1.1E-05 2.3E-10 76.9 14.9 123 104-231 120-249 (311)
170 KOG2899 Predicted methyltransf 98.4 2.5E-06 5.4E-11 79.2 10.4 110 120-231 57-209 (288)
171 COG2521 Predicted archaeal met 98.4 6E-07 1.3E-11 82.9 6.2 107 119-232 132-246 (287)
172 TIGR00755 ksgA dimethyladenosi 98.3 5.7E-06 1.2E-10 76.9 12.3 87 119-218 27-115 (253)
173 KOG1541 Predicted protein carb 98.3 3.8E-06 8.2E-11 77.1 10.4 101 120-231 49-160 (270)
174 KOG3010 Methyltransferase [Gen 98.3 1E-06 2.2E-11 81.6 6.5 102 122-230 34-136 (261)
175 PRK14896 ksgA 16S ribosomal RN 98.3 3.6E-06 7.8E-11 78.6 10.1 70 120-199 28-97 (258)
176 PRK04338 N(2),N(2)-dimethylgua 98.3 3.2E-06 6.9E-11 83.7 10.1 101 122-231 58-158 (382)
177 PRK00274 ksgA 16S ribosomal RN 98.3 2.5E-06 5.5E-11 80.3 8.9 62 119-189 40-101 (272)
178 PF10672 Methyltrans_SAM: S-ad 98.3 2.6E-06 5.6E-11 81.2 8.5 107 120-231 122-238 (286)
179 PRK05031 tRNA (uracil-5-)-meth 98.3 4.7E-06 1E-10 81.8 10.4 96 122-229 207-318 (362)
180 PRK04148 hypothetical protein; 98.3 9.4E-06 2E-10 69.2 10.8 93 120-231 15-109 (134)
181 KOG2904 Predicted methyltransf 98.3 1.3E-05 2.7E-10 75.8 12.5 92 101-198 131-227 (328)
182 KOG1661 Protein-L-isoaspartate 98.3 7.9E-06 1.7E-10 74.4 10.8 111 120-238 81-201 (237)
183 PF10294 Methyltransf_16: Puta 98.2 7.4E-06 1.6E-10 72.2 9.9 107 120-231 44-156 (173)
184 KOG3420 Predicted RNA methylas 98.2 1.6E-06 3.4E-11 75.0 4.4 78 120-203 47-124 (185)
185 COG1352 CheR Methylase of chem 98.2 4.2E-05 9E-10 72.4 14.4 115 121-235 96-245 (268)
186 TIGR02143 trmA_only tRNA (urac 98.2 1.3E-05 2.8E-10 78.5 11.3 96 122-229 198-309 (353)
187 PRK01544 bifunctional N5-gluta 98.2 9.5E-06 2.1E-10 83.0 10.7 110 120-233 346-464 (506)
188 COG0357 GidB Predicted S-adeno 98.1 9.4E-06 2E-10 74.4 8.7 99 122-229 68-166 (215)
189 TIGR00478 tly hemolysin TlyA f 98.1 8.8E-06 1.9E-10 75.2 8.4 90 120-229 74-169 (228)
190 COG0144 Sun tRNA and rRNA cyto 98.1 3.9E-05 8.6E-10 75.2 13.4 111 119-231 154-288 (355)
191 PF07091 FmrO: Ribosomal RNA m 98.1 8.5E-06 1.8E-10 76.0 8.2 151 29-203 29-181 (251)
192 PF01170 UPF0020: Putative RNA 98.1 3.2E-05 7E-10 68.6 11.6 117 120-237 27-157 (179)
193 KOG1975 mRNA cap methyltransfe 98.1 2.1E-05 4.6E-10 75.7 10.3 109 120-231 116-237 (389)
194 COG0500 SmtA SAM-dependent met 98.1 9.6E-05 2.1E-09 57.4 11.9 102 125-232 52-156 (257)
195 COG3963 Phospholipid N-methylt 98.0 4.7E-05 1E-09 67.3 10.3 106 119-232 46-157 (194)
196 PRK00050 16S rRNA m(4)C1402 me 98.0 1.9E-05 4.1E-10 75.7 8.3 80 119-203 17-100 (296)
197 PRK09424 pntA NAD(P) transhydr 98.0 3.3E-05 7.2E-10 79.1 9.8 106 120-232 163-286 (509)
198 PF04672 Methyltransf_19: S-ad 98.0 6.1E-05 1.3E-09 71.1 10.8 108 121-231 68-190 (267)
199 KOG2730 Methylase [General fun 98.0 6.9E-06 1.5E-10 75.3 4.2 105 121-231 94-202 (263)
200 PF09243 Rsm22: Mitochondrial 98.0 0.0001 2.2E-09 69.8 12.3 106 120-231 32-139 (274)
201 COG2520 Predicted methyltransf 97.9 7.2E-05 1.6E-09 73.0 11.0 115 106-231 174-289 (341)
202 PF03602 Cons_hypoth95: Conser 97.9 1.4E-05 3E-10 71.4 5.6 108 120-234 41-156 (183)
203 TIGR00308 TRM1 tRNA(guanine-26 97.9 4.6E-05 1E-09 75.3 9.6 100 123-231 46-147 (374)
204 PF05891 Methyltransf_PK: AdoM 97.9 4.3E-05 9.4E-10 70.0 8.6 106 121-231 55-161 (218)
205 COG4262 Predicted spermidine s 97.9 0.00013 2.9E-09 71.4 12.0 113 120-235 288-411 (508)
206 COG1064 AdhP Zn-dependent alco 97.9 4.6E-05 9.9E-10 74.2 8.8 97 119-234 164-262 (339)
207 PF08123 DOT1: Histone methyla 97.9 6.3E-05 1.4E-09 68.5 8.6 106 119-229 40-156 (205)
208 KOG2915 tRNA(1-methyladenosine 97.8 0.00017 3.8E-09 68.1 11.0 103 119-229 103-207 (314)
209 COG0742 N6-adenine-specific me 97.8 0.00018 4E-09 64.5 10.6 109 120-234 42-157 (187)
210 COG2265 TrmA SAM-dependent met 97.8 8.2E-05 1.8E-09 74.8 9.2 99 120-228 292-393 (432)
211 KOG1499 Protein arginine N-met 97.8 0.00013 2.8E-09 70.9 9.9 103 120-228 59-164 (346)
212 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.00016 3.4E-09 76.9 11.2 84 148-232 257-348 (702)
213 COG1063 Tdh Threonine dehydrog 97.8 5.5E-05 1.2E-09 73.7 7.0 102 120-234 167-272 (350)
214 PRK09880 L-idonate 5-dehydroge 97.8 0.00013 2.8E-09 70.0 9.4 98 120-231 168-266 (343)
215 PF04816 DUF633: Family of unk 97.8 0.0002 4.4E-09 65.2 10.1 101 125-231 1-101 (205)
216 TIGR00561 pntA NAD(P) transhyd 97.8 7.8E-05 1.7E-09 76.3 8.2 102 120-228 162-281 (511)
217 COG0116 Predicted N6-adenine-s 97.8 7E-05 1.5E-09 73.8 7.5 111 120-231 190-344 (381)
218 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00012 2.7E-09 69.5 9.0 110 119-231 83-219 (283)
219 COG4976 Predicted methyltransf 97.7 1.2E-05 2.7E-10 74.2 1.9 100 120-231 124-225 (287)
220 PF05971 Methyltransf_10: Prot 97.7 0.00021 4.6E-09 68.5 10.2 120 74-198 57-182 (299)
221 PF01728 FtsJ: FtsJ-like methy 97.7 6.6E-05 1.4E-09 65.9 6.3 99 121-233 23-141 (181)
222 COG1041 Predicted DNA modifica 97.7 0.00068 1.5E-08 66.1 13.3 107 120-232 196-311 (347)
223 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.00013 2.7E-09 71.5 8.2 71 111-187 186-256 (352)
224 PF05148 Methyltransf_8: Hypot 97.7 0.00013 2.9E-09 66.5 7.5 87 120-231 71-158 (219)
225 PF13679 Methyltransf_32: Meth 97.7 0.0007 1.5E-08 57.5 11.4 101 120-229 24-129 (141)
226 PF04989 CmcI: Cephalosporin h 97.6 0.00032 6.9E-09 63.9 9.0 107 120-232 31-148 (206)
227 TIGR03439 methyl_EasF probable 97.6 0.002 4.3E-08 62.5 14.1 122 106-229 55-195 (319)
228 PRK11760 putative 23S rRNA C24 97.5 0.00042 9.1E-09 67.7 9.4 87 120-224 210-296 (357)
229 KOG1500 Protein arginine N-met 97.5 0.001 2.2E-08 64.7 11.9 103 120-228 176-279 (517)
230 COG0030 KsgA Dimethyladenosine 97.5 0.00051 1.1E-08 64.7 9.4 72 119-198 28-100 (259)
231 KOG0820 Ribosomal RNA adenine 97.5 0.00071 1.5E-08 64.0 10.3 73 119-198 56-128 (315)
232 PF07279 DUF1442: Protein of u 97.5 0.0013 2.7E-08 60.3 11.6 107 119-232 39-150 (218)
233 KOG2352 Predicted spermine/spe 97.5 0.0008 1.7E-08 68.0 10.9 124 94-229 25-159 (482)
234 COG4076 Predicted RNA methylas 97.5 0.00055 1.2E-08 61.8 8.6 146 120-273 31-189 (252)
235 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.00023 5E-09 66.9 6.0 110 120-232 55-200 (256)
236 PF06962 rRNA_methylase: Putat 97.4 0.00073 1.6E-08 58.1 8.6 83 149-232 1-93 (140)
237 KOG3178 Hydroxyindole-O-methyl 97.4 0.003 6.5E-08 61.5 13.7 160 59-231 99-275 (342)
238 COG0686 Ald Alanine dehydrogen 97.4 0.00044 9.5E-09 66.6 7.3 100 120-228 166-265 (371)
239 TIGR01444 fkbM_fam methyltrans 97.4 0.0006 1.3E-08 57.0 7.4 60 124-187 1-60 (143)
240 PF01861 DUF43: Protein of unk 97.3 0.0029 6.3E-08 59.0 11.7 106 120-233 43-151 (243)
241 cd00401 AdoHcyase S-adenosyl-L 97.3 0.00087 1.9E-08 67.1 8.6 89 120-231 200-289 (413)
242 PF02737 3HCDH_N: 3-hydroxyacy 97.3 0.0039 8.6E-08 55.3 11.6 99 124-231 1-114 (180)
243 COG0293 FtsJ 23S rRNA methylas 97.3 0.002 4.3E-08 58.8 9.6 122 120-261 44-186 (205)
244 COG2384 Predicted SAM-dependen 97.2 0.0034 7.4E-08 57.7 10.7 104 120-229 15-118 (226)
245 KOG1709 Guanidinoacetate methy 97.2 0.0037 8.1E-08 57.6 10.8 116 120-242 100-218 (271)
246 PRK05808 3-hydroxybutyryl-CoA 97.2 0.0031 6.7E-08 59.3 10.7 100 123-231 4-118 (282)
247 KOG3191 Predicted N6-DNA-methy 97.2 0.007 1.5E-07 54.4 11.9 107 120-231 42-168 (209)
248 cd08230 glucose_DH Glucose deh 97.2 0.0015 3.2E-08 62.9 8.4 96 120-231 171-269 (355)
249 PRK06035 3-hydroxyacyl-CoA deh 97.1 0.0023 4.9E-08 60.6 9.2 98 123-229 4-119 (291)
250 COG3897 Predicted methyltransf 97.1 0.0021 4.6E-08 58.3 8.2 104 120-233 78-181 (218)
251 PRK10742 putative methyltransf 97.1 0.0017 3.7E-08 60.8 7.9 79 120-203 85-174 (250)
252 KOG3045 Predicted RNA methylas 97.1 0.0011 2.4E-08 62.5 6.5 85 120-231 179-264 (325)
253 PRK07066 3-hydroxybutyryl-CoA 97.1 0.0024 5.1E-08 62.0 9.1 102 122-231 7-119 (321)
254 cd08237 ribitol-5-phosphate_DH 97.1 0.0023 4.9E-08 61.6 8.9 95 120-231 162-256 (341)
255 KOG0024 Sorbitol dehydrogenase 97.1 0.0028 6.1E-08 61.3 9.2 112 119-245 167-286 (354)
256 PRK07819 3-hydroxybutyryl-CoA 97.1 0.0049 1.1E-07 58.5 10.9 100 123-231 6-121 (286)
257 KOG1562 Spermidine synthase [A 97.1 0.0015 3.3E-08 62.5 7.1 110 119-231 119-236 (337)
258 PF05219 DREV: DREV methyltran 97.0 0.0041 8.9E-08 58.6 9.7 94 121-231 94-188 (265)
259 TIGR00518 alaDH alanine dehydr 97.0 0.0012 2.6E-08 65.1 6.2 103 120-231 165-267 (370)
260 TIGR00006 S-adenosyl-methyltra 97.0 0.0026 5.6E-08 61.4 8.2 80 119-203 18-102 (305)
261 PF00398 RrnaAD: Ribosomal RNA 97.0 0.0091 2E-07 55.9 11.5 101 120-231 29-134 (262)
262 PF07942 N2227: N2227-like pro 97.0 0.0098 2.1E-07 56.4 11.7 105 120-229 55-200 (270)
263 TIGR03366 HpnZ_proposed putati 97.0 0.0029 6.4E-08 59.0 8.1 97 120-231 119-218 (280)
264 PRK08293 3-hydroxybutyryl-CoA 97.0 0.0049 1.1E-07 58.3 9.6 101 123-231 4-120 (287)
265 TIGR02822 adh_fam_2 zinc-bindi 97.0 0.009 2E-07 57.2 11.5 92 119-231 163-254 (329)
266 PF01262 AlaDh_PNT_C: Alanine 96.9 0.00031 6.8E-09 61.4 1.1 101 120-229 18-137 (168)
267 PRK09260 3-hydroxybutyryl-CoA 96.9 0.0044 9.5E-08 58.5 8.5 101 123-231 2-117 (288)
268 PF03721 UDPG_MGDP_dh_N: UDP-g 96.9 0.0013 2.9E-08 58.7 4.7 102 123-231 1-120 (185)
269 TIGR01202 bchC 2-desacetyl-2-h 96.8 0.0038 8.3E-08 59.2 7.9 88 120-231 143-231 (308)
270 cd08239 THR_DH_like L-threonin 96.8 0.0045 9.8E-08 58.8 8.0 98 119-231 161-262 (339)
271 PRK07530 3-hydroxybutyryl-CoA 96.8 0.015 3.1E-07 55.1 11.2 100 122-230 4-118 (292)
272 PF02384 N6_Mtase: N-6 DNA Met 96.8 0.0076 1.6E-07 57.3 9.3 123 106-232 34-184 (311)
273 PRK08306 dipicolinate synthase 96.7 0.0051 1.1E-07 58.8 7.8 89 120-228 150-238 (296)
274 PRK07502 cyclohexadienyl dehyd 96.6 0.013 2.8E-07 55.8 9.7 92 123-229 7-98 (307)
275 KOG1331 Predicted methyltransf 96.6 0.0039 8.4E-08 59.3 5.9 96 120-229 44-141 (293)
276 PLN02740 Alcohol dehydrogenase 96.6 0.0088 1.9E-07 58.4 8.4 97 119-231 196-300 (381)
277 cd08281 liver_ADH_like1 Zinc-d 96.6 0.0051 1.1E-07 59.7 6.6 99 119-231 189-290 (371)
278 TIGR03201 dearomat_had 6-hydro 96.6 0.0074 1.6E-07 58.0 7.7 99 119-231 164-272 (349)
279 cd08283 FDH_like_1 Glutathione 96.5 0.009 1.9E-07 58.5 8.2 105 120-232 183-307 (386)
280 PRK06130 3-hydroxybutyryl-CoA 96.5 0.0072 1.6E-07 57.5 7.2 100 122-229 4-113 (311)
281 PLN02545 3-hydroxybutyryl-CoA 96.5 0.026 5.6E-07 53.4 10.7 99 122-229 4-117 (295)
282 PF02005 TRM: N2,N2-dimethylgu 96.4 0.009 2E-07 59.2 7.4 106 121-233 49-156 (377)
283 TIGR03451 mycoS_dep_FDH mycoth 96.4 0.0069 1.5E-07 58.4 6.5 97 120-231 175-276 (358)
284 PF01269 Fibrillarin: Fibrilla 96.4 0.06 1.3E-06 49.8 12.1 104 119-230 71-177 (229)
285 PLN02494 adenosylhomocysteinas 96.4 0.023 5.1E-07 57.8 10.4 146 59-231 185-341 (477)
286 KOG2187 tRNA uracil-5-methyltr 96.4 0.0051 1.1E-07 62.7 5.5 124 97-231 358-489 (534)
287 TIGR00936 ahcY adenosylhomocys 96.4 0.013 2.8E-07 58.7 8.3 146 58-231 125-282 (406)
288 PLN02586 probable cinnamyl alc 96.4 0.014 3.1E-07 56.6 8.4 97 120-231 182-278 (360)
289 TIGR02987 met_A_Alw26 type II 96.3 0.02 4.3E-07 58.8 9.7 75 121-198 31-117 (524)
290 PRK10309 galactitol-1-phosphat 96.3 0.0097 2.1E-07 56.9 6.9 98 120-231 159-260 (347)
291 PF03141 Methyltransf_29: Puta 96.3 0.0026 5.6E-08 64.7 2.9 117 101-231 99-219 (506)
292 PF01795 Methyltransf_5: MraW 96.2 0.02 4.2E-07 55.4 8.4 90 106-203 8-103 (310)
293 PRK05476 S-adenosyl-L-homocyst 96.2 0.019 4.2E-07 57.8 8.7 147 57-231 141-299 (425)
294 PRK07417 arogenate dehydrogena 96.2 0.039 8.5E-07 52.0 10.2 86 124-227 2-87 (279)
295 TIGR02818 adh_III_F_hyde S-(hy 96.2 0.023 4.9E-07 55.3 8.6 97 119-231 183-287 (368)
296 KOG2940 Predicted methyltransf 96.1 0.0078 1.7E-07 56.1 4.9 103 120-230 71-173 (325)
297 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.1 0.047 1E-06 56.2 11.1 102 120-231 3-120 (503)
298 PF02254 TrkA_N: TrkA-N domain 96.1 0.063 1.4E-06 43.1 9.6 93 125-232 1-97 (116)
299 COG0287 TyrA Prephenate dehydr 96.1 0.035 7.6E-07 52.9 9.3 93 122-228 3-95 (279)
300 PLN02178 cinnamyl-alcohol dehy 96.1 0.024 5.3E-07 55.6 8.4 96 120-231 177-273 (375)
301 cd08238 sorbose_phosphate_red 96.0 0.057 1.2E-06 53.4 10.8 102 120-230 174-287 (410)
302 cd08296 CAD_like Cinnamyl alco 96.0 0.035 7.7E-07 52.7 8.9 100 119-232 161-260 (333)
303 cd05188 MDR Medium chain reduc 96.0 0.033 7.1E-07 50.0 8.2 99 120-232 133-233 (271)
304 PRK11064 wecC UDP-N-acetyl-D-m 96.0 0.025 5.4E-07 56.6 8.0 99 123-232 4-120 (415)
305 TIGR01470 cysG_Nterm siroheme 95.9 0.034 7.3E-07 50.5 8.1 105 120-242 7-112 (205)
306 PLN02827 Alcohol dehydrogenase 95.9 0.026 5.6E-07 55.2 7.9 97 119-231 191-295 (378)
307 PRK11154 fadJ multifunctional 95.9 0.032 7E-07 59.6 9.1 101 122-231 309-425 (708)
308 cd08254 hydroxyacyl_CoA_DH 6-h 95.9 0.018 3.9E-07 54.0 6.4 98 120-231 164-263 (338)
309 PRK06129 3-hydroxyacyl-CoA deh 95.9 0.074 1.6E-06 50.8 10.7 96 123-227 3-114 (308)
310 TIGR02437 FadB fatty oxidation 95.9 0.038 8.3E-07 59.1 9.5 102 121-231 312-428 (714)
311 PLN02353 probable UDP-glucose 95.9 0.077 1.7E-06 54.2 11.2 104 123-231 2-127 (473)
312 COG0275 Predicted S-adenosylme 95.9 0.039 8.5E-07 53.1 8.4 91 106-203 11-106 (314)
313 cd08300 alcohol_DH_class_III c 95.8 0.043 9.4E-07 53.2 8.9 97 119-231 184-288 (368)
314 PRK11730 fadB multifunctional 95.8 0.087 1.9E-06 56.4 11.9 100 123-231 314-428 (715)
315 TIGR02441 fa_ox_alpha_mit fatt 95.8 0.028 6E-07 60.4 8.0 99 123-231 336-450 (737)
316 cd08277 liver_alcohol_DH_like 95.8 0.044 9.4E-07 53.1 8.7 97 119-231 182-286 (365)
317 cd08301 alcohol_DH_plants Plan 95.7 0.044 9.6E-07 53.0 8.5 97 119-231 185-289 (369)
318 PRK12921 2-dehydropantoate 2-r 95.7 0.053 1.2E-06 51.0 8.7 98 123-229 1-100 (305)
319 COG5459 Predicted rRNA methyla 95.7 0.016 3.4E-07 57.0 5.1 107 120-231 112-225 (484)
320 PLN02514 cinnamyl-alcohol dehy 95.7 0.056 1.2E-06 52.3 8.9 97 120-231 179-275 (357)
321 cd05213 NAD_bind_Glutamyl_tRNA 95.7 0.042 9.2E-07 52.8 8.0 98 120-232 176-273 (311)
322 PRK08268 3-hydroxy-acyl-CoA de 95.7 0.021 4.5E-07 58.7 6.2 101 121-231 6-122 (507)
323 cd08232 idonate-5-DH L-idonate 95.7 0.055 1.2E-06 51.2 8.7 98 120-231 164-262 (339)
324 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.041 9E-07 44.8 6.8 84 133-234 2-92 (130)
325 COG1062 AdhC Zn-dependent alco 95.6 0.042 9.2E-07 53.7 7.7 142 120-274 184-331 (366)
326 TIGR02825 B4_12hDH leukotriene 95.6 0.057 1.2E-06 51.0 8.6 98 119-231 136-237 (325)
327 KOG1122 tRNA and rRNA cytosine 95.6 0.096 2.1E-06 52.5 10.3 110 119-231 239-371 (460)
328 PRK07531 bifunctional 3-hydrox 95.6 0.081 1.7E-06 54.1 10.2 98 123-229 5-114 (495)
329 PRK15182 Vi polysaccharide bio 95.6 0.13 2.8E-06 51.8 11.4 104 120-231 4-120 (425)
330 PF04445 SAM_MT: Putative SAM- 95.6 0.023 5E-07 52.9 5.5 77 123-203 77-161 (234)
331 KOG3201 Uncharacterized conser 95.6 0.01 2.2E-07 52.6 2.9 129 120-255 28-163 (201)
332 PRK06522 2-dehydropantoate 2-r 95.6 0.095 2.1E-06 49.1 9.8 97 123-229 1-98 (304)
333 PF11899 DUF3419: Protein of u 95.5 0.03 6.6E-07 55.6 6.6 78 154-233 256-336 (380)
334 cd08285 NADP_ADH NADP(H)-depen 95.5 0.049 1.1E-06 52.1 7.9 98 119-231 164-266 (351)
335 TIGR02819 fdhA_non_GSH formald 95.5 0.035 7.7E-07 54.9 7.1 104 119-231 183-299 (393)
336 PRK00066 ldh L-lactate dehydro 95.5 0.16 3.5E-06 49.1 11.4 107 120-231 4-122 (315)
337 PRK15057 UDP-glucose 6-dehydro 95.5 0.13 2.8E-06 51.2 11.0 102 123-231 1-117 (388)
338 PLN03154 putative allyl alcoho 95.5 0.053 1.1E-06 52.4 8.1 99 119-231 156-258 (348)
339 PRK08507 prephenate dehydrogen 95.5 0.082 1.8E-06 49.6 9.1 87 124-228 2-88 (275)
340 cd08255 2-desacetyl-2-hydroxye 95.4 0.1 2.2E-06 47.8 9.4 95 119-231 95-190 (277)
341 PRK01747 mnmC bifunctional tRN 95.4 0.065 1.4E-06 56.6 9.0 111 120-231 56-206 (662)
342 PRK05562 precorrin-2 dehydroge 95.4 0.095 2.1E-06 48.4 8.9 104 120-243 23-129 (223)
343 PF03807 F420_oxidored: NADP o 95.4 0.055 1.2E-06 42.1 6.4 87 124-228 1-91 (96)
344 TIGR02440 FadJ fatty oxidation 95.4 0.068 1.5E-06 57.0 9.1 100 123-231 305-420 (699)
345 KOG2352 Predicted spermine/spe 95.4 0.026 5.7E-07 57.3 5.6 108 120-231 294-416 (482)
346 TIGR00872 gnd_rel 6-phosphoglu 95.4 0.067 1.4E-06 51.0 8.2 89 123-228 1-90 (298)
347 PRK08229 2-dehydropantoate 2-r 95.3 0.081 1.8E-06 50.8 8.7 98 123-228 3-104 (341)
348 PRK00094 gpsA NAD(P)H-dependen 95.3 0.11 2.4E-06 49.2 9.5 98 123-230 2-104 (325)
349 PLN02256 arogenate dehydrogena 95.3 0.11 2.4E-06 50.0 9.3 100 103-227 23-123 (304)
350 PF10727 Rossmann-like: Rossma 95.2 0.095 2.1E-06 44.2 7.7 95 120-232 8-105 (127)
351 PRK08324 short chain dehydroge 95.2 0.29 6.3E-06 51.9 13.1 105 121-231 421-557 (681)
352 PRK12480 D-lactate dehydrogena 95.2 0.071 1.5E-06 51.9 7.7 93 120-234 144-236 (330)
353 PLN02712 arogenate dehydrogena 95.2 0.58 1.3E-05 49.9 15.1 90 120-228 367-457 (667)
354 PRK05708 2-dehydropantoate 2-r 95.1 0.15 3.2E-06 48.8 9.8 97 123-229 3-102 (305)
355 cd08294 leukotriene_B4_DH_like 95.1 0.075 1.6E-06 49.8 7.6 98 119-231 141-241 (329)
356 PRK03562 glutathione-regulated 95.1 0.17 3.6E-06 53.4 10.8 97 122-233 400-500 (621)
357 cd08245 CAD Cinnamyl alcohol d 95.0 0.18 3.8E-06 47.5 9.8 97 119-231 160-256 (330)
358 cd08233 butanediol_DH_like (2R 95.0 0.071 1.5E-06 51.0 7.2 99 119-232 170-273 (351)
359 TIGR03026 NDP-sugDHase nucleot 95.0 0.24 5.2E-06 49.3 11.1 101 123-231 1-120 (411)
360 cd08231 MDR_TM0436_like Hypoth 94.9 0.25 5.3E-06 47.4 10.7 97 120-231 176-280 (361)
361 COG0604 Qor NADPH:quinone redu 94.9 0.098 2.1E-06 50.7 7.9 98 120-232 141-242 (326)
362 PRK08655 prephenate dehydrogen 94.9 0.12 2.6E-06 52.1 8.7 89 123-229 1-90 (437)
363 PRK10083 putative oxidoreducta 94.9 0.1 2.2E-06 49.3 7.8 100 119-231 158-259 (339)
364 PRK09496 trkA potassium transp 94.8 0.3 6.5E-06 48.6 11.4 98 120-231 229-330 (453)
365 cd08242 MDR_like Medium chain 94.8 0.24 5.2E-06 46.4 10.1 92 119-230 153-244 (319)
366 PF13241 NAD_binding_7: Putati 94.8 0.12 2.6E-06 41.5 6.9 97 120-241 5-102 (103)
367 PRK09422 ethanol-active dehydr 94.8 0.15 3.2E-06 48.2 8.6 100 119-231 160-261 (338)
368 PRK03659 glutathione-regulated 94.8 0.23 5.1E-06 52.0 10.9 97 122-233 400-500 (601)
369 cd08293 PTGR2 Prostaglandin re 94.7 0.11 2.4E-06 49.3 7.6 94 122-231 155-254 (345)
370 PRK10669 putative cation:proto 94.7 0.25 5.4E-06 51.2 10.6 123 123-268 418-544 (558)
371 PTZ00075 Adenosylhomocysteinas 94.6 0.11 2.4E-06 53.0 7.8 88 120-230 252-340 (476)
372 PF03446 NAD_binding_2: NAD bi 94.6 0.1 2.2E-06 45.1 6.6 90 123-231 2-94 (163)
373 cd08298 CAD2 Cinnamyl alcohol 94.6 0.19 4.2E-06 47.2 8.9 91 120-231 166-256 (329)
374 PRK06545 prephenate dehydrogen 94.6 0.15 3.3E-06 49.9 8.4 91 123-228 1-92 (359)
375 cd05293 LDH_1 A subgroup of L- 94.6 0.54 1.2E-05 45.4 12.0 105 121-231 2-120 (312)
376 PRK09496 trkA potassium transp 94.5 0.37 8.1E-06 47.9 11.2 95 123-231 1-99 (453)
377 PRK12771 putative glutamate sy 94.5 0.054 1.2E-06 56.0 5.4 35 120-156 135-169 (564)
378 PRK06249 2-dehydropantoate 2-r 94.5 0.18 3.9E-06 48.2 8.6 101 120-229 3-104 (313)
379 TIGR02853 spore_dpaA dipicolin 94.5 0.11 2.4E-06 49.6 7.0 91 120-231 149-239 (287)
380 PHA01634 hypothetical protein 94.5 0.25 5.4E-06 42.3 8.2 73 120-201 27-100 (156)
381 PRK06718 precorrin-2 dehydroge 94.4 0.2 4.3E-06 45.3 8.2 106 120-243 8-113 (202)
382 cd05283 CAD1 Cinnamyl alcohol 94.4 0.26 5.6E-06 46.9 9.5 96 119-231 167-263 (337)
383 PF02826 2-Hacid_dh_C: D-isome 94.4 0.028 6.1E-07 49.5 2.6 96 120-234 34-129 (178)
384 PLN02688 pyrroline-5-carboxyla 94.4 0.22 4.8E-06 46.1 8.6 89 123-228 1-92 (266)
385 COG1004 Ugd Predicted UDP-gluc 94.4 0.38 8.3E-06 48.1 10.5 102 123-231 1-120 (414)
386 PTZ00142 6-phosphogluconate de 94.3 0.25 5.4E-06 50.4 9.6 98 123-231 2-100 (470)
387 cd08295 double_bond_reductase_ 94.3 0.19 4.2E-06 47.8 8.3 97 119-231 149-251 (338)
388 PRK13243 glyoxylate reductase; 94.2 0.087 1.9E-06 51.2 5.8 91 120-229 148-238 (333)
389 PRK14106 murD UDP-N-acetylmura 94.2 0.52 1.1E-05 47.0 11.4 73 121-203 4-78 (450)
390 cd08265 Zn_ADH3 Alcohol dehydr 94.1 0.28 6E-06 47.9 9.1 98 120-231 202-307 (384)
391 PTZ00082 L-lactate dehydrogena 94.1 0.36 7.7E-06 46.8 9.8 103 121-231 5-128 (321)
392 PRK06223 malate dehydrogenase; 94.1 0.44 9.5E-06 45.3 10.2 101 123-230 3-118 (307)
393 KOG0023 Alcohol dehydrogenase, 94.1 0.14 3.1E-06 49.8 6.7 101 116-231 176-279 (360)
394 cd05279 Zn_ADH1 Liver alcohol 94.1 0.15 3.3E-06 49.3 7.1 97 119-231 181-285 (365)
395 COG3288 PntA NAD/NADP transhyd 94.0 0.058 1.3E-06 52.1 4.0 103 120-228 162-278 (356)
396 PF01210 NAD_Gly3P_dh_N: NAD-d 94.0 0.19 4E-06 43.4 6.8 101 124-235 1-106 (157)
397 KOG4589 Cell division protein 94.0 0.44 9.6E-06 43.3 9.3 101 120-234 68-187 (232)
398 COG1867 TRM1 N2,N2-dimethylgua 94.0 0.21 4.5E-06 49.4 7.8 101 122-231 53-154 (380)
399 cd08234 threonine_DH_like L-th 94.0 0.29 6.3E-06 46.0 8.7 95 120-231 158-257 (334)
400 COG1748 LYS9 Saccharopine dehy 94.0 0.24 5.2E-06 49.4 8.3 71 123-201 2-76 (389)
401 COG1250 FadB 3-hydroxyacyl-CoA 93.9 0.21 4.5E-06 48.4 7.6 104 122-231 3-118 (307)
402 PRK14618 NAD(P)H-dependent gly 93.9 0.21 4.6E-06 47.9 7.8 94 121-228 3-101 (328)
403 cd05278 FDH_like Formaldehyde 93.9 0.15 3.2E-06 48.2 6.6 97 120-231 166-267 (347)
404 PRK14806 bifunctional cyclohex 93.9 0.29 6.3E-06 52.2 9.5 91 123-228 4-94 (735)
405 PF05711 TylF: Macrocin-O-meth 93.9 0.37 8.1E-06 45.2 9.1 107 120-232 73-213 (248)
406 PRK12491 pyrroline-5-carboxyla 93.8 0.38 8.2E-06 45.5 9.1 96 123-235 3-100 (272)
407 cd05292 LDH_2 A subgroup of L- 93.8 0.71 1.5E-05 44.3 11.1 103 123-231 1-116 (308)
408 COG4301 Uncharacterized conser 93.8 1.2 2.6E-05 42.2 12.1 141 88-231 27-193 (321)
409 PRK11199 tyrA bifunctional cho 93.8 0.65 1.4E-05 45.9 11.1 76 120-228 96-172 (374)
410 cd08291 ETR_like_1 2-enoyl thi 93.8 0.29 6.2E-06 46.2 8.3 95 121-231 142-242 (324)
411 cd05291 HicDH_like L-2-hydroxy 93.8 0.71 1.5E-05 44.2 11.0 103 123-231 1-117 (306)
412 PRK02705 murD UDP-N-acetylmura 93.8 0.59 1.3E-05 46.8 10.9 75 123-204 1-79 (459)
413 PF02056 Glyco_hydro_4: Family 93.7 0.32 6.9E-06 43.7 7.9 85 124-216 1-93 (183)
414 cd08286 FDH_like_ADH2 formalde 93.7 0.38 8.2E-06 45.7 9.0 98 120-232 165-267 (345)
415 PRK09599 6-phosphogluconate de 93.6 0.34 7.3E-06 46.1 8.5 92 123-230 1-93 (301)
416 PF01488 Shikimate_DH: Shikima 93.6 0.085 1.8E-06 44.4 3.9 78 120-206 10-88 (135)
417 cd08299 alcohol_DH_class_I_II_ 93.6 0.36 7.9E-06 47.0 8.9 96 120-231 189-292 (373)
418 cd05297 GH4_alpha_glucosidase_ 93.6 0.21 4.5E-06 50.2 7.2 100 124-227 2-116 (423)
419 PRK05479 ketol-acid reductoiso 93.6 0.31 6.8E-06 47.6 8.2 92 120-231 15-108 (330)
420 TIGR00692 tdh L-threonine 3-de 93.6 0.51 1.1E-05 44.9 9.6 97 120-231 160-261 (340)
421 PLN02928 oxidoreductase family 93.5 0.13 2.8E-06 50.4 5.6 108 120-234 157-264 (347)
422 cd05285 sorbitol_DH Sorbitol d 93.5 0.19 4.2E-06 47.8 6.6 98 119-231 160-265 (343)
423 PRK12490 6-phosphogluconate de 93.5 0.33 7.1E-06 46.2 8.1 91 124-230 2-93 (299)
424 PF02558 ApbA: Ketopantoate re 93.4 0.17 3.7E-06 42.5 5.5 97 125-229 1-99 (151)
425 PRK12769 putative oxidoreducta 93.4 0.084 1.8E-06 55.7 4.4 35 121-157 326-360 (654)
426 PRK01438 murD UDP-N-acetylmura 93.4 0.47 1E-05 47.9 9.5 74 120-203 14-88 (480)
427 cd08278 benzyl_alcohol_DH Benz 93.2 0.19 4E-06 48.7 6.1 98 120-231 185-285 (365)
428 PRK15469 ghrA bifunctional gly 93.2 0.13 2.7E-06 49.8 4.9 95 120-234 134-228 (312)
429 PF11968 DUF3321: Putative met 93.2 0.22 4.8E-06 45.9 6.1 89 121-232 51-150 (219)
430 PRK08818 prephenate dehydrogen 93.2 0.34 7.4E-06 48.0 7.9 79 121-228 3-85 (370)
431 PLN02702 L-idonate 5-dehydroge 93.2 0.29 6.3E-06 47.1 7.3 99 119-231 179-285 (364)
432 PRK06719 precorrin-2 dehydroge 93.1 0.85 1.8E-05 39.6 9.5 102 120-242 11-112 (157)
433 PRK05225 ketol-acid reductoiso 93.1 0.13 2.8E-06 52.3 4.9 91 120-231 34-131 (487)
434 cd01339 LDH-like_MDH L-lactate 93.1 0.47 1E-05 45.1 8.6 100 125-231 1-116 (300)
435 COG2084 MmsB 3-hydroxyisobutyr 93.0 0.19 4.1E-06 48.2 5.7 90 123-231 1-95 (286)
436 COG0569 TrkA K+ transport syst 93.0 1.3 2.7E-05 40.8 10.9 85 123-220 1-89 (225)
437 cd05290 LDH_3 A subgroup of L- 92.9 1 2.2E-05 43.4 10.7 103 124-231 1-119 (307)
438 PRK06940 short chain dehydroge 92.9 1.1 2.4E-05 41.6 10.7 101 123-229 3-123 (275)
439 COG4798 Predicted methyltransf 92.9 0.44 9.4E-06 43.6 7.4 108 118-231 45-166 (238)
440 COG4627 Uncharacterized protei 92.9 0.11 2.4E-06 45.8 3.5 82 125-234 6-89 (185)
441 cd01338 MDH_choloroplast_like 92.9 0.64 1.4E-05 45.1 9.2 107 121-231 1-128 (322)
442 cd08261 Zn_ADH7 Alcohol dehydr 92.8 0.28 6E-06 46.5 6.6 98 120-231 158-258 (337)
443 TIGR02354 thiF_fam2 thiamine b 92.8 0.98 2.1E-05 40.8 9.8 101 121-228 20-142 (200)
444 PRK11559 garR tartronate semia 92.8 0.5 1.1E-05 44.5 8.2 87 123-228 3-93 (296)
445 COG3129 Predicted SAM-dependen 92.8 0.21 4.5E-06 46.7 5.4 79 120-200 77-160 (292)
446 PRK13403 ketol-acid reductoiso 92.8 0.36 7.9E-06 47.2 7.3 101 120-243 14-115 (335)
447 PRK05442 malate dehydrogenase; 92.7 0.74 1.6E-05 44.8 9.3 108 120-231 2-130 (326)
448 KOG0822 Protein kinase inhibit 92.7 0.52 1.1E-05 48.7 8.4 107 122-231 368-478 (649)
449 PRK07679 pyrroline-5-carboxyla 92.7 0.81 1.8E-05 43.0 9.4 93 122-229 3-97 (279)
450 PRK12809 putative oxidoreducta 92.6 0.14 3E-06 54.0 4.6 35 121-157 309-343 (639)
451 PRK14620 NAD(P)H-dependent gly 92.6 1 2.2E-05 43.2 10.2 96 124-229 2-104 (326)
452 PTZ00117 malate dehydrogenase; 92.6 0.8 1.7E-05 44.2 9.5 101 121-229 4-120 (319)
453 TIGR01915 npdG NADPH-dependent 92.6 1.5 3.2E-05 39.8 10.7 101 123-235 1-104 (219)
454 PRK12439 NAD(P)H-dependent gly 92.6 0.55 1.2E-05 45.6 8.4 98 120-228 5-108 (341)
455 PF10237 N6-adenineMlase: Prob 92.6 3.5 7.5E-05 36.3 12.6 119 94-232 2-124 (162)
456 cd08289 MDR_yhfp_like Yhfp put 92.5 0.54 1.2E-05 43.9 8.0 93 121-232 146-244 (326)
457 PF01408 GFO_IDH_MocA: Oxidore 92.5 0.4 8.6E-06 38.5 6.2 91 124-231 2-93 (120)
458 PRK00045 hemA glutamyl-tRNA re 92.5 0.46 1E-05 47.6 7.9 100 120-232 180-280 (423)
459 PLN02712 arogenate dehydrogena 92.4 0.63 1.4E-05 49.6 9.2 89 120-227 50-139 (667)
460 cd08236 sugar_DH NAD(P)-depend 92.4 0.55 1.2E-05 44.5 8.0 98 119-231 157-258 (343)
461 PRK15076 alpha-galactosidase; 92.4 0.096 2.1E-06 52.8 2.9 79 123-204 2-86 (431)
462 TIGR00873 gnd 6-phosphoglucona 92.4 0.51 1.1E-05 48.2 8.2 96 124-231 1-97 (467)
463 PTZ00357 methyltransferase; Pr 92.3 1.5 3.2E-05 47.0 11.4 102 124-226 703-830 (1072)
464 PRK07326 short chain dehydroge 92.3 2.8 6E-05 37.2 12.1 76 121-202 5-91 (237)
465 cd08260 Zn_ADH6 Alcohol dehydr 92.3 0.53 1.1E-05 44.7 7.8 96 120-231 164-264 (345)
466 PRK07680 late competence prote 92.3 0.86 1.9E-05 42.6 9.0 88 124-228 2-93 (273)
467 cd08248 RTN4I1 Human Reticulon 92.3 0.54 1.2E-05 44.5 7.7 94 121-231 162-257 (350)
468 COG0677 WecC UDP-N-acetyl-D-ma 92.2 1.8 3.9E-05 43.5 11.4 102 121-231 8-128 (436)
469 cd08287 FDH_like_ADH3 formalde 92.2 0.52 1.1E-05 44.6 7.6 98 119-231 166-268 (345)
470 cd08263 Zn_ADH10 Alcohol dehyd 92.2 0.93 2E-05 43.7 9.4 98 120-231 186-287 (367)
471 COG1189 Predicted rRNA methyla 92.2 1.3 2.9E-05 41.4 9.8 97 120-231 78-178 (245)
472 PRK08217 fabG 3-ketoacyl-(acyl 92.2 0.73 1.6E-05 41.2 8.1 76 121-201 4-90 (253)
473 cd00300 LDH_like L-lactate deh 92.1 1.1 2.3E-05 42.9 9.6 102 125-231 1-115 (300)
474 PF05430 Methyltransf_30: S-ad 92.1 0.055 1.2E-06 45.5 0.6 59 176-234 32-93 (124)
475 cd05281 TDH Threonine dehydrog 92.1 0.56 1.2E-05 44.6 7.7 97 120-231 162-262 (341)
476 TIGR00027 mthyl_TIGR00027 meth 92.1 0.97 2.1E-05 42.5 9.1 108 120-232 80-198 (260)
477 KOG4058 Uncharacterized conser 92.0 0.9 1.9E-05 39.9 7.9 116 96-229 50-170 (199)
478 TIGR02356 adenyl_thiF thiazole 92.0 0.79 1.7E-05 41.3 8.1 34 120-156 19-54 (202)
479 cd08279 Zn_ADH_class_III Class 91.9 0.42 9.1E-06 46.1 6.7 97 120-231 181-282 (363)
480 cd05296 GH4_P_beta_glucosidase 91.9 1.2 2.6E-05 44.9 10.0 76 123-204 1-86 (419)
481 cd08282 PFDH_like Pseudomonas 91.9 0.7 1.5E-05 44.8 8.2 99 120-230 175-284 (375)
482 cd08246 crotonyl_coA_red croto 91.9 0.51 1.1E-05 46.0 7.3 45 120-166 192-237 (393)
483 cd05298 GH4_GlvA_pagL_like Gly 91.9 0.44 9.4E-06 48.3 6.9 77 123-205 1-86 (437)
484 cd08264 Zn_ADH_like2 Alcohol d 91.8 0.85 1.8E-05 42.7 8.4 91 119-231 160-253 (325)
485 cd05289 MDR_like_2 alcohol deh 91.7 1.4 3.1E-05 40.1 9.6 94 119-231 142-238 (309)
486 KOG1501 Arginine N-methyltrans 91.7 0.34 7.3E-06 49.1 5.7 62 123-188 68-129 (636)
487 PRK13771 putative alcohol dehy 91.7 0.97 2.1E-05 42.5 8.8 94 120-231 161-255 (334)
488 cd01491 Ube1_repeat1 Ubiquitin 91.7 1.9 4.1E-05 41.3 10.7 109 121-241 18-147 (286)
489 cd05288 PGDH Prostaglandin deh 91.7 0.88 1.9E-05 42.6 8.4 96 120-231 144-244 (329)
490 cd08240 6_hydroxyhexanoate_dh_ 91.6 0.51 1.1E-05 44.9 6.8 95 120-231 174-274 (350)
491 PRK06928 pyrroline-5-carboxyla 91.6 1.1 2.3E-05 42.3 8.8 98 123-235 2-101 (277)
492 PLN02602 lactate dehydrogenase 91.6 1.9 4E-05 42.5 10.7 104 123-231 38-154 (350)
493 TIGR01318 gltD_gamma_fam gluta 91.6 0.26 5.6E-06 49.9 5.0 35 121-157 140-174 (467)
494 TIGR01759 MalateDH-SF1 malate 91.6 1.8 3.9E-05 42.1 10.5 107 121-231 2-129 (323)
495 cd05284 arabinose_DH_like D-ar 91.5 0.54 1.2E-05 44.4 6.8 97 120-231 166-266 (340)
496 cd05286 QOR2 Quinone oxidoredu 91.5 0.5 1.1E-05 43.1 6.3 94 120-231 135-235 (320)
497 COG1889 NOP1 Fibrillarin-like 91.4 2.5 5.5E-05 38.9 10.6 116 105-229 60-178 (231)
498 PRK12779 putative bifunctional 91.4 0.39 8.5E-06 53.1 6.5 35 120-156 304-338 (944)
499 PRK12939 short chain dehydroge 91.4 2.8 6E-05 37.4 11.0 76 121-202 6-93 (250)
500 cd01065 NAD_bind_Shikimate_DH 91.4 0.72 1.6E-05 38.7 6.8 74 120-202 17-90 (155)
No 1
>PLN03075 nicotianamine synthase; Provisional
Probab=100.00 E-value=5.1e-77 Score=562.95 Aligned_cols=292 Identities=70% Similarity=1.123 Sum_probs=276.7
Q ss_pred CCchhhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCcchhhcccccHHHHHHHHHHHHHHhhHHHHHHH
Q 021008 1 MVCQNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHF 80 (318)
Q Consensus 1 ~~~~~~~lv~~i~~~~~~i~~l~~l~ps~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ae~~lE~~~ 80 (318)
|++|.+++|++|+++|++|++|++|+||++||+||++||++|++++ ++|++.+++++|+||++|+++|++||+.||.||
T Consensus 4 ~~~~~~~~i~~i~~~y~~i~~l~~l~ps~~v~~lf~~Lv~~c~~~~-~~~~~~l~~~i~~~~~~l~~l~~~ae~~lE~~~ 82 (296)
T PLN03075 4 MGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPS-SIDVTKLCEEIQEMRSKLIKLCGEAEGLLEAHF 82 (296)
T ss_pred chhhHHHHHHHHHHHHHHHhhCcccCCchhHHHHHHHHHHHhCCCC-cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred HHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH
Q 021008 81 SSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN 160 (318)
Q Consensus 81 A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai 160 (318)
|+.+++.++||++|+.||||+||++|.++|++.|......+|++|+||||||+|+|+++++++++|+++|+|+|+|++++
T Consensus 83 a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai 162 (296)
T PLN03075 83 STILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN 162 (296)
T ss_pred HHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999998776679999999999999999999998888999999999999999
Q ss_pred HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccc
Q 021008 161 SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLY 240 (318)
Q Consensus 161 ~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lY 240 (318)
+.||++++++.|+.++|+|+++|+.+++..+++||+||++++++|++++|.++++++++.|+|||.+++|++||+|+|+|
T Consensus 163 ~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LY 242 (296)
T PLN03075 163 DVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLY 242 (296)
T ss_pred HHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcC
Confidence 99999996558999999999999999765567999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCcEEEEEEcCchhHHHHHHHHhhccCCCcc-cCCCCCCcccCCcc
Q 021008 241 PVVDPSDLLGFEVLSVFHPTDEVINSVVLARKYVMPSLE-QQDQLSPKILPKKC 293 (318)
Q Consensus 241 P~v~~~~l~gf~~~~~~~p~~~VvNsvv~ark~~~~~~~-~~~~~~~~~~~~~~ 293 (318)
|+|++++++||+++.++||+++||||||++||...+..+ .+|..+++++||||
T Consensus 243 p~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~~~~~~~~~~~~~~~~~~~~ 296 (296)
T PLN03075 243 PVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGGPVGSGVAGIGGVVSLPCNC 296 (296)
T ss_pred CCCChhhCCCeEEEEEECCCCCceeeEEEEEeecCCcccccccCCccccCCCCC
Confidence 999999999999999999999999999999997654432 34778999999999
No 2
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=100.00 E-value=7e-75 Score=543.65 Aligned_cols=270 Identities=60% Similarity=0.928 Sum_probs=168.7
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCcchhhcccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 021008 4 QNDALVKKVCELYEQISGLESLKPCKDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLESHFSSI 83 (318)
Q Consensus 4 ~~~~lv~~i~~~~~~i~~l~~l~ps~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ae~~lE~~~A~~ 83 (318)
|.+.+|++|+++|++|++|+||+|||+||+||++||++|++++ +.|++.++|+++++++.|+++|++||+.||.|||+.
T Consensus 4 ~~~~lv~~i~~ly~~i~~L~sl~ps~~vn~lF~~Lv~~c~~~~-~~dv~~L~~~i~~~~~~L~~~~~~ae~~LE~~~A~~ 82 (276)
T PF03059_consen 4 EAEALVEKILSLYAQISKLESLSPSPEVNALFTQLVSLCIPPS-PIDVTKLSPEIQSIRPSLRRLCSEAEGLLESHWAKR 82 (276)
T ss_dssp ---------------------------------------------------TGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999998 688877889999999999999999999999999999
Q ss_pred hhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHH
Q 021008 84 LASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKA 163 (318)
Q Consensus 84 l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~A 163 (318)
++++++||++|+.||||+||++|+++|++.+.......|+||+||||||+|+|+++||++|++++.|+|||+||+|++.|
T Consensus 83 l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a 162 (276)
T PF03059_consen 83 LLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA 162 (276)
T ss_dssp HHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH
T ss_pred HHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 99999999999999999999999999999998766567899999999999999999999888899999999999999999
Q ss_pred HHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCC
Q 021008 164 LSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVV 243 (318)
Q Consensus 164 r~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v 243 (318)
+++++++.|++++|+|+++|+.+++.++..||+||++++|||++++|.+++++++++|+||++|++|++||+|+|+||.+
T Consensus 163 ~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~v 242 (276)
T PF03059_consen 163 RRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVV 242 (276)
T ss_dssp HHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS---
T ss_pred HHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCC
Confidence 99999558999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCcEEEEEEcCchhHHHHHHHHhhcc
Q 021008 244 DPSDLLGFEVLSVFHPTDEVINSVVLARKYV 274 (318)
Q Consensus 244 ~~~~l~gf~~~~~~~p~~~VvNsvv~ark~~ 274 (318)
++++++||+++.++||+++|+||||++||..
T Consensus 243 d~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 243 DPEDLRGFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp -TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred ChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence 9999999999999999999999999999974
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=7.6e-18 Score=135.49 Aligned_cols=107 Identities=22% Similarity=0.330 Sum_probs=88.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-cccCcCCCCccEEEe
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-MNVSSALKDYEVVFL 199 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-~~l~~~l~~fD~V~~ 199 (318)
|+.||||||||+ |..++.+++.+ ++++|+|||+||++++.|++.+.+ .+.+++++|+++|+ ... .....||+|+.
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~-~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLF-PGARVVGVDISPEMLEIARERAAE-EGLSDRITFVQGDAEFDP-DFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-TTTTTTEEEEESCCHGGT-TTSSCEEEEEE
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECccccCc-ccCCCCCEEEE
Confidence 578999999995 67778888743 899999999999999999999976 77889999999999 332 23348999998
Q ss_pred ccc-c-CC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AAL-V-GM-DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aal-v-gm-~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..+ . .+ +.+++.++++.+++.|+|||++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 771 1 12 23688999999999999999999875
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=9.4e-16 Score=148.48 Aligned_cols=163 Identities=17% Similarity=0.257 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC--CCCcccccCCcChhhHHHhhHHHHHHHhhccc-----CCCCEEEEEc
Q 021008 57 SVQDIRSKLIRLCGEAEGLLESHFSSILASF--ENPIANLNIFPYYSNYIKLSQLEFNILTQHCS-----RFPTKIAFIG 129 (318)
Q Consensus 57 ~~~~l~~~l~~l~~~ae~~lE~~~A~~l~~~--~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~-----~~~~rVL~IG 129 (318)
....+.+.++..+.+....+|..|.+.+..+ +..- ....+-..-.++++.-... ... .++.+|||||
T Consensus 53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~---~~~~~~~aq~~~~~~~l~~---~~~~~~~~~~~~~VLDiG 126 (340)
T PLN02244 53 ATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA---SRGDHRQAQIRMIEESLAW---AGVPDDDEKRPKRIVDVG 126 (340)
T ss_pred chhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC---CcccHHHHHHHHHHHHHHh---cCCCcccCCCCCeEEEec
Confidence 4456778888888887778888776655332 1100 0011111112222222222 222 5678999999
Q ss_pred cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec-cccCCChh
Q 021008 130 SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA-ALVGMDKD 208 (318)
Q Consensus 130 sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a-alvgm~~~ 208 (318)
||. |..++.+++++ |++|+|||+|+.+++.|+++.+. .|+.++++|+++|+.++++..++||+|+.. ++.++ .
T Consensus 127 CG~-G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~--~ 200 (340)
T PLN02244 127 CGI-GGSSRYLARKY--GANVKGITLSPVQAARANALAAA-QGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHM--P 200 (340)
T ss_pred CCC-CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEEcCcccCCCCCCCccEEEECCchhcc--C
Confidence 996 66667888764 89999999999999999999887 788889999999999998877899999863 33333 5
Q ss_pred HHHHHHHHHHHhccCCeEEEEEc
Q 021008 209 EKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 209 ~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++.+++++++++|||||.|++-+
T Consensus 201 d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 201 DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEE
Confidence 78899999999999999998754
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.68 E-value=1.6e-16 Score=146.59 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=80.5
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+|||||||+ |..++.++++..++++|+|+|+|+++++.|++.... .+.. +++|+++|+.++|++.++||+|+
T Consensus 45 ~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~-~~~~-~i~~v~~da~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 45 LRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR-EGLQ-NIEFVQGDAEDLPFPDNSFDAVT 121 (233)
T ss_dssp --S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH-TT---SEEEEE-BTTB--S-TT-EEEEE
T ss_pred CCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh-hCCC-CeeEEEcCHHHhcCCCCceeEEE
Confidence 36789999999996 677778887766788999999999999999999887 6664 99999999999999888999999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++..+. +.+++.+.+++++|+|||||++++-+
T Consensus 122 ~~fglr-n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 122 CSFGLR-NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EES-GG-G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhHH-hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 776442 34678999999999999999998766
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=5e-16 Score=143.65 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=95.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.+|.+|||||||+ |--++.+++.. +.++|+|+|+|+.|++.|++.... .|... ++|++|||.+||+++++||+|.+
T Consensus 50 ~~g~~vLDva~GT-Gd~a~~~~k~~-g~g~v~~~D~s~~ML~~a~~k~~~-~~~~~-i~fv~~dAe~LPf~D~sFD~vt~ 125 (238)
T COG2226 50 KPGDKVLDVACGT-GDMALLLAKSV-GTGEVVGLDISESMLEVAREKLKK-KGVQN-VEFVVGDAENLPFPDNSFDAVTI 125 (238)
T ss_pred CCCCEEEEecCCc-cHHHHHHHHhc-CCceEEEEECCHHHHHHHHHHhhc-cCccc-eEEEEechhhCCCCCCccCEEEe
Confidence 4799999999995 78888899875 488999999999999999999998 77766 99999999999999999999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+..+. +..++.++|++++|+|||||++++-+
T Consensus 126 ~fglr-nv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 126 SFGLR-NVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred eehhh-cCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 76442 34689999999999999999998877
No 7
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.64 E-value=4.6e-16 Score=141.09 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=95.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----C--CCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----A--LKD 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~--l~~ 193 (318)
..|++||+||+| .|+|+++||+...++++|+++|+|++..+.|++++++ .|++++|+++.||+.+... . .+.
T Consensus 44 ~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~-ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK-AGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH-TTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh-cCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 689999999998 7999999998765589999999999999999999999 9999999999999987322 1 247
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
||+||+++ ++..+..+++.+.+.|+|||++++++.
T Consensus 122 fD~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 122 FDFVFIDA----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEEEES----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred eeEEEEcc----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 99999999 789999999999999999999999994
No 8
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.64 E-value=1.1e-15 Score=139.55 Aligned_cols=107 Identities=18% Similarity=0.293 Sum_probs=97.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-ccccccCcC--CCCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TDIMNVSSA--LKDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gDa~~l~~~--l~~fD~ 196 (318)
.++++||+||++ +|+|+++||.....++++|++|+||+..+.|++++++ .|+.++|+.+. +|+.+.... .++||+
T Consensus 58 ~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 58 SGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred cCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 789999999998 8999999998753388999999999999999999999 99999999999 599886543 358999
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
||+++ ++..+.++++.+.+.|+|||++++++.
T Consensus 136 iFIDa----dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 136 VFIDA----DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EEEeC----ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 99999 899999999999999999999999983
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.63 E-value=3e-15 Score=115.49 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=78.9
Q ss_pred EEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCC
Q 021008 126 AFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM 205 (318)
Q Consensus 126 L~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm 205 (318)
|||||| .|.++..++++ ++.+|+++|+++++++.+++.... .+++++.+|+.++++..++||+|+......+
T Consensus 1 LdiG~G-~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCG-TGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN-----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-T-TSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT-----STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCc-CCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc-----cCchheeehHHhCccccccccccccccceee
Confidence 799999 57888888874 799999999999999999998876 5566999999999998889999997654432
Q ss_pred ChhHHHHHHHHHHHhccCCeEEEE
Q 021008 206 DKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 206 ~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
- +++.++++++.|+|||||++++
T Consensus 73 ~-~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 L-EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp S-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred c-cCHHHHHHHHHHHcCcCeEEeC
Confidence 2 7999999999999999999975
No 10
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=4.3e-15 Score=127.01 Aligned_cols=110 Identities=17% Similarity=0.266 Sum_probs=91.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~ 198 (318)
..+.+|||+|||. |..++.++++..++++|+|||+|+++++.|++.++. .++. +++|+++|+.+++..+ ..||+|+
T Consensus 2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-~~~~-ni~~~~~d~~~l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGT-GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-LGLD-NIEFIQGDIEDLPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TT-SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-TTST-TEEEEESBTTCGCGCSSTTEEEEE
T ss_pred CCCCEEEEecCcC-cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-cccc-ccceEEeehhccccccCCCeeEEE
Confidence 4678999999995 677788886556899999999999999999999998 7886 9999999999976222 5899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
...... ...+...+++.+.+.|+|||.+++.+..
T Consensus 79 ~~~~l~-~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLH-HFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGG-GTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchh-hccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 875432 3467789999999999999999998855
No 11
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=9e-15 Score=135.36 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=102.3
Q ss_pred cCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhC-CCCcEEEEEeCChHHHHHHHHHhhcCCCC
Q 021008 95 NIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINH-LTTTCFDNYDIDPSANSKALSLVSSDPDL 173 (318)
Q Consensus 95 ~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~gvDid~~ai~~Ar~~~~~~~gl 173 (318)
..-|.|++...++..-.... ..++.+|||||||+ |..++.+++.. .|+++|+|+|+|+++++.|++.+.. .+.
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~----~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~ 107 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERF----VQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKA 107 (247)
T ss_pred hcCCChHHHHHHHHHHHHHh----CCCCCEEEEEcccC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCC
Confidence 34688888877765543332 35778999999996 66666677632 4799999999999999999999987 777
Q ss_pred CCCeEEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 174 STRMFFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 174 ~~ri~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..+++++++|+.+++. ..||+|+... +..++..++.++++++++.|||||.+++.+
T Consensus 108 ~~~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 108 PTPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCCeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7899999999998764 3699877542 334456778999999999999999998876
No 12
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.62 E-value=2.7e-15 Score=138.31 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=95.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC------CCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA------LKD 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~------l~~ 193 (318)
.++++||+|||| .|++++++|+...++++|+++|+|+++++.|++++++ .|++++++++.||+.+.... .++
T Consensus 67 ~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~-~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 67 MNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK-AGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred hCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 679999999999 6999999998655578999999999999999999999 99999999999999874221 248
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
||+||+++ ++..+..+++.+.+.|+|||++++.+.
T Consensus 145 fD~VfiDa----~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 145 FDFAFVDA----DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCEEEECC----CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 99999998 678889999999999999999999873
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.60 E-value=2e-14 Score=134.53 Aligned_cols=142 Identities=14% Similarity=0.196 Sum_probs=105.9
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+|||||||. |..+..+|+. .+++|+|+|+++.+++.|++.... ..+++|+++|+.+.+...++||+|+
T Consensus 50 l~~~~~VLDiGcG~-G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~~FD~V~ 122 (263)
T PTZ00098 50 LNENSKVLDIGSGL-GGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPENTFDMIY 122 (263)
T ss_pred CCCCCEEEEEcCCC-ChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCCCeEEEE
Confidence 46789999999996 5566778865 388999999999999999987653 3689999999998877667899999
Q ss_pred e-ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC-C----Ccc--------cccccCCCccc----cC--CcEEEEEEc
Q 021008 199 L-AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA-H----GAR--------AFLYPVVDPSD----LL--GFEVLSVFH 258 (318)
Q Consensus 199 ~-aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~-~----g~r--------~~lYP~v~~~~----l~--gf~~~~~~~ 258 (318)
. .++.+++..++.++++++++.|||||.+++.+. . ... ...|+..++++ ++ ||+...+.+
T Consensus 123 s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 123 SRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred EhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence 7 445566666899999999999999999998652 0 110 11233334332 22 999887776
Q ss_pred CchhHHHHH
Q 021008 259 PTDEVINSV 267 (318)
Q Consensus 259 p~~~VvNsv 267 (318)
-++.....+
T Consensus 203 ~~~~~~~~~ 211 (263)
T PTZ00098 203 ISDYWLELL 211 (263)
T ss_pred CcHHHHHHH
Confidence 666554433
No 14
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.60 E-value=2.7e-14 Score=133.50 Aligned_cols=110 Identities=7% Similarity=0.089 Sum_probs=88.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc-CCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS-DPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~-~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.++.+|||||||+ |..+..+++.+.+.++|+|+|+|+++++.|++.... ..+...+++|+++|+.++|...++||+|+
T Consensus 72 ~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 72 KMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5788999999996 566677887654568999999999999999876541 02234689999999999988777999998
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+...++ ...++.+++++++|+|||||.+++-+
T Consensus 151 ~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 151 MGYGLR-NVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred Eecccc-cCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 654332 23578999999999999999998876
No 15
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.59 E-value=6.1e-15 Score=137.28 Aligned_cols=107 Identities=15% Similarity=0.207 Sum_probs=97.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-------C
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-------K 192 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-------~ 192 (318)
..+++||+||++ .|+|++++|+...++++|+++|+|++..+.|++++++ .|+.++|+++.||+.+....+ +
T Consensus 78 ~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~-ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQK-AGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 688999999998 7999999998765689999999999999999999999 999999999999998743221 4
Q ss_pred CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+||+||+++ ++..+..+++.+.+.|+|||++++++.
T Consensus 156 ~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 156 TFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred cccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 899999999 789999999999999999999999883
No 16
>PLN02476 O-methyltransferase
Probab=99.59 E-value=8.8e-15 Score=138.22 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=96.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC------CCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA------LKD 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~------l~~ 193 (318)
.++++||+||+| .|++++++|+...++.+|+++|+|++..+.|++++++ .|+.++|+++.||+.+.... .+.
T Consensus 117 ~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~-aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL-AGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 689999999999 7999999998654578999999999999999999999 99999999999999874322 247
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
||+||+++ ++..+..+++.+.+.|+|||++++++.
T Consensus 195 FD~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 195 YDFAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CCEEEECC----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999999 788999999999999999999999883
No 17
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.58 E-value=5.9e-14 Score=128.76 Aligned_cols=127 Identities=15% Similarity=0.183 Sum_probs=98.1
Q ss_pred CcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhC-CCCcEEEEEeCChHHHHHHHHHhhcCCCCCC
Q 021008 97 FPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINH-LTTTCFDNYDIDPSANSKALSLVSSDPDLST 175 (318)
Q Consensus 97 fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ 175 (318)
-|+|++...++.. +......++.+|||||||+ |..++.++++. .|+++|+|+|+|+++++.|++.+.. .+...
T Consensus 33 ~p~y~~~~~~~~~----l~~~~~~~~~~iLDlGcG~-G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~-~~~~~ 106 (239)
T TIGR00740 33 VPGYSNIITAIGM----LAERFVTPDSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEI 106 (239)
T ss_pred CCCHHHHHHHHHH----HHHHhCCCCCEEEEecCCC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCC
Confidence 4677766665432 1111235778999999996 56666777653 3799999999999999999999887 66677
Q ss_pred CeEEEEccccccCcCCCCccEEEecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 176 RMFFHTTDIMNVSSALKDYEVVFLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 176 ri~f~~gDa~~l~~~l~~fD~V~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+++|+++|+.+++. ..+|+|+....+ .++.+++.++++++++.|+|||.+++.+
T Consensus 107 ~v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 107 PVEILCNDIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CeEEEECChhhCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 89999999998764 368987754333 4456788999999999999999999986
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=2.4e-14 Score=132.79 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=87.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~~fD~V~ 198 (318)
..+.+|||||||+ |..++.+|+ .|.+|+++|+|+++++.|++.... .|+..+++|+++|+.+++ ...+.||+|+
T Consensus 43 ~~~~~vLDiGcG~-G~~a~~la~---~g~~v~~vD~s~~~l~~a~~~~~~-~g~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGE-GQTAIKLAE---LGHQVILCDLSAEMIQRAKQAAEA-KGVSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHh-cCCccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 5678999999996 677778887 388999999999999999999988 788889999999998874 2335899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+...+.. ..+..++++++.+.|||||.+++-.
T Consensus 118 ~~~vl~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEW-VADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHh-hCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 7664421 2456789999999999999997643
No 19
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.56 E-value=7.2e-14 Score=127.32 Aligned_cols=137 Identities=14% Similarity=0.096 Sum_probs=100.8
Q ss_pred HHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH
Q 021008 80 FSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA 159 (318)
Q Consensus 80 ~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a 159 (318)
|.++-.+.+.||+.-...|.+..|.... ...++.|||++||| .|..+++||+ .|..|||||+|+.|
T Consensus 3 Wd~ry~~~~~~w~~~~p~~~l~~~~~~l----------~~~~~~rvLd~GCG-~G~da~~LA~---~G~~V~gvD~S~~A 68 (213)
T TIGR03840 3 WHERWQEGQIGFHQSEVNPLLVKHWPAL----------GLPAGARVFVPLCG-KSLDLAWLAE---QGHRVLGVELSEIA 68 (213)
T ss_pred HHHHHhcCCCCCccCCCCHHHHHHHHhh----------CCCCCCeEEEeCCC-chhHHHHHHh---CCCeEEEEeCCHHH
Confidence 4444455677887767788666554311 11466799999999 6899999997 49999999999999
Q ss_pred HHHHHHHhhcC----------CCCCCCeEEEEccccccCcC-CCCccEEEec-cccCCChhHHHHHHHHHHHhccCCeEE
Q 021008 160 NSKALSLVSSD----------PDLSTRMFFHTTDIMNVSSA-LKDYEVVFLA-ALVGMDKDEKIRVIDHLAKYMAPGALL 227 (318)
Q Consensus 160 i~~Ar~~~~~~----------~gl~~ri~f~~gDa~~l~~~-l~~fD~V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~l 227 (318)
++.+.+..... ..-+.+++|+++|+.+++.. .+.||.||-. .+++++.+.+.++++.+.+.|||||++
T Consensus 69 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ 148 (213)
T TIGR03840 69 VEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQ 148 (213)
T ss_pred HHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeE
Confidence 99864322110 00135799999999998654 3479999853 345678899999999999999999975
Q ss_pred EEE
Q 021008 228 MLR 230 (318)
Q Consensus 228 v~r 230 (318)
++-
T Consensus 149 ll~ 151 (213)
T TIGR03840 149 LLI 151 (213)
T ss_pred EEE
Confidence 443
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.55 E-value=6.2e-14 Score=127.29 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=89.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++|||||||+ |..+..+++...++++|+|+|+++++++.|++..+. .++ ++++++.+|+.+++...++||+|++
T Consensus 44 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 44 QAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD-AGL-HNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred CCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh-cCC-CceEEEEechhcCCCCCCCccEEEE
Confidence 5778999999996 666677887655788999999999999999998876 666 6899999999988766668999987
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...++ ..++..++++++.+.|+|||.+++.+
T Consensus 121 ~~~l~-~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 121 GFGLR-NVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ecccc-cCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 65433 23567789999999999999998765
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.54 E-value=8.9e-14 Score=124.48 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=82.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+||||||| .|..++.+|+ .|.+|+|+|+|+.+++.+++.++. .++ ++++..+|..+.+.+ +.||+|+.
T Consensus 29 ~~~~~vLDiGcG-~G~~a~~la~---~g~~V~~iD~s~~~l~~a~~~~~~-~~~--~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 29 VAPCKTLDLGCG-QGRNSLYLSL---AGYDVRAWDHNPASIASVLDMKAR-ENL--PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCCcEEEeCCC-CCHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHH-hCC--CceeEeccchhcccc-CCCCEEEE
Confidence 467899999999 5788888987 388999999999999999998876 565 378888887655432 47999986
Q ss_pred ccc-cCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 200 AAL-VGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 200 aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
... ..++.++..++++++++.|+|||.+++-
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 542 2445678889999999999999985443
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.53 E-value=7.8e-14 Score=124.76 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=88.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
+++.+|||||||+ |..++.+|+. .++++|+++|+|+++++.|++.++. .++.+ ++|+.+|+.+++. .++||+|+.
T Consensus 44 ~~g~~VLDiGcGt-G~~al~la~~-~~~~~V~giD~s~~~l~~A~~~~~~-~~l~~-i~~~~~d~~~~~~-~~~fDlV~~ 118 (187)
T PRK00107 44 PGGERVLDVGSGA-GFPGIPLAIA-RPELKVTLVDSLGKKIAFLREVAAE-LGLKN-VTVVHGRAEEFGQ-EEKFDVVTS 118 (187)
T ss_pred CCCCeEEEEcCCC-CHHHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHH-cCCCC-EEEEeccHhhCCC-CCCccEEEE
Confidence 4589999999995 7777888875 3899999999999999999999998 78754 9999999999765 558999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
.+. .+...+++++++.|||||.+++-..
T Consensus 119 ~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 119 RAV-----ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ccc-----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 763 3567899999999999999988754
No 23
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.53 E-value=1.5e-13 Score=129.66 Aligned_cols=106 Identities=12% Similarity=0.202 Sum_probs=84.0
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.|||||||| -|..++.+|++| |++|+||.+|++..+.|++.+++ .|+.+++++..+|..+++. .||.|+
T Consensus 60 l~~G~~vLDiGcG-wG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~-~gl~~~v~v~~~D~~~~~~---~fD~Iv 132 (273)
T PF02353_consen 60 LKPGDRVLDIGCG-WGGLAIYAAERY--GCHVTGITLSEEQAEYARERIRE-AGLEDRVEVRLQDYRDLPG---KFDRIV 132 (273)
T ss_dssp --TT-EEEEES-T-TSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC-STSSSTEEEEES-GGG------S-SEEE
T ss_pred CCCCCEEEEeCCC-ccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEEeeccccCC---CCCEEE
Confidence 4899999999999 677778999986 99999999999999999999999 9999999999999988764 899766
Q ss_pred -eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 -LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 -~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+..+-++..+.+.++++.+.+.|||||++++..
T Consensus 133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 555556666788999999999999999998754
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.52 E-value=1.2e-13 Score=128.98 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=90.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++||+||||+ |..++.+++.+.++.+|+++|+++++++.|+++... .|+ .+++|+.+|+.+++...+.||+|+.
T Consensus 76 ~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 76 KPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-AGY-TNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-cCC-CCEEEEEcchhhCCCCCCceeEEEE
Confidence 6789999999997 777777777655667899999999999999999887 676 5899999999998766668999996
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....++ ..++.++++++.+.|||||+|++.+
T Consensus 153 ~~v~~~-~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVINL-SPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCcccC-CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 654332 3577889999999999999999865
No 25
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.50 E-value=6e-14 Score=111.94 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=77.5
Q ss_pred EEEEccCCChHHHHHHHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec-c
Q 021008 125 IAFIGSGPLPLTSIVLAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA-A 201 (318)
Q Consensus 125 VL~IGsGplp~tai~LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a-a 201 (318)
|||+|||+ |..+..+++.+ .+..+++|+|+|+++++.|++.... .+. +++|+++|+.+++...++||+|+.. .
T Consensus 1 ILDlgcG~-G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGT-GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGP--KVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TT-SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTT--TSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCC-cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCC--ceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 79999996 55556677654 1348999999999999999999987 454 8999999999998777799999983 3
Q ss_pred -ccCCChhHHHHHHHHHHHhccCCe
Q 021008 202 -LVGMDKDEKIRVIDHLAKYMAPGA 225 (318)
Q Consensus 202 -lvgm~~~~k~~vl~~l~r~LkpGg 225 (318)
+..++.++..++++++++++||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 446678899999999999999998
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.50 E-value=1.1e-13 Score=133.58 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=88.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||+ |..+..+|+ .|++|+|||+++++++.|++.+.. .+...+++|+++|+.+++...+.||+|+.
T Consensus 130 ~~g~~ILDIGCG~-G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~-~~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 130 FEGLKFIDIGCGG-GLLSEPLAR---MGATVTGVDAVDKNVKIARLHADM-DPVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCCEEEEeeCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHh-cCcccceeEEecCHHHhhhccCCCCEEEE
Confidence 3567999999995 666678886 589999999999999999988765 45567899999999998766668999996
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
...+. ...+..++++++++.|||||.+++...
T Consensus 205 ~~vLe-Hv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 205 LEVIE-HVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hhHHH-hcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 55332 234678899999999999999998763
No 27
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.50 E-value=3.5e-13 Score=123.19 Aligned_cols=135 Identities=14% Similarity=0.139 Sum_probs=98.9
Q ss_pred HHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH
Q 021008 81 SSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN 160 (318)
Q Consensus 81 A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai 160 (318)
-++-.+.+.||.--+.+|++..|.... ...++.|||++||| .|..+++||+ .|..|+|||+|+.|+
T Consensus 7 d~rw~~~~~~~~~~~p~~~L~~~~~~~----------~~~~~~rvL~~gCG-~G~da~~LA~---~G~~V~avD~s~~Ai 72 (218)
T PRK13255 7 HEKWAENQIGFHQEEVNPLLQKYWPAL----------ALPAGSRVLVPLCG-KSLDMLWLAE---QGHEVLGVELSELAV 72 (218)
T ss_pred HHHHcCCCCCCCCCCCCHHHHHHHHhh----------CCCCCCeEEEeCCC-ChHhHHHHHh---CCCeEEEEccCHHHH
Confidence 333344456776668888777665421 12456799999999 6899999997 499999999999999
Q ss_pred HHHHHHhhc-----CCC-----CCCCeEEEEccccccCcCC-CCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 161 SKALSLVSS-----DPD-----LSTRMFFHTTDIMNVSSAL-KDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 161 ~~Ar~~~~~-----~~g-----l~~ri~f~~gDa~~l~~~l-~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+.+.+-... ..| .+.+|++.++|+.+++... ..||.||-.+ ++.++.+.+.++++.+.+.|+|||+++
T Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 73 EQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred HHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 987431110 000 2478999999999986543 4899999433 345578999999999999999998643
Q ss_pred E
Q 021008 229 L 229 (318)
Q Consensus 229 ~ 229 (318)
+
T Consensus 153 l 153 (218)
T PRK13255 153 L 153 (218)
T ss_pred E
Confidence 3
No 28
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.49 E-value=6.9e-13 Score=107.67 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=83.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-CcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-SSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~~~l~~fD~V~ 198 (318)
.++.+|+|+|||+ |..++.++++. ++++|+++|+++.+++.|++.++. .++ .+++++.+|+.+. +.....||+|+
T Consensus 18 ~~~~~vldlG~G~-G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGS-GSITIEAARLV-PNGRVYAIERNPEALRLIERNARR-FGV-SNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCC-CHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHH-hCC-CceEEEeccccccChhhcCCCCEEE
Confidence 5678999999997 56667778754 779999999999999999999887 666 4799999998763 22334899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
+..- .....++++++++.|+|||.+++.
T Consensus 94 ~~~~----~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 94 IGGS----GGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ECCc----chhHHHHHHHHHHHcCCCCEEEEE
Confidence 7652 245568999999999999999875
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=3.7e-13 Score=120.64 Aligned_cols=103 Identities=16% Similarity=0.275 Sum_probs=85.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||+|||. |..++.||+ .|++|+|+|+|+++++.|++..+. .++ .+++++++|+.+++.. +.||+|+.
T Consensus 29 ~~~~~vLDiGcG~-G~~a~~La~---~g~~V~gvD~S~~~i~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 29 VKPGKTLDLGCGN-GRNSLYLAA---NGFDVTAWDKNPMSIANLERIKAA-ENL-DNLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred CCCCcEEEECCCC-CHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHH-cCC-CcceEEecChhhCCcC-CCcCEEEE
Confidence 5678999999995 777788997 388999999999999999999887 666 4699999999876543 47999986
Q ss_pred cccc-CCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 200 AALV-GMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
.... .++.++..++++++++.|+|||.+++
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 5433 34667889999999999999998544
No 30
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=6.1e-13 Score=125.80 Aligned_cols=102 Identities=17% Similarity=0.254 Sum_probs=83.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+||||||| .|..++.+|+ .|.+|+|+|+|+.+++.+++.++. .++ ++++..+|+.+... .++||+|+.
T Consensus 119 ~~~~~vLDlGcG-~G~~~~~la~---~g~~V~avD~s~~ai~~~~~~~~~-~~l--~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCG-QGRNSLYLAL---LGFDVTAVDINQQSLENLQEIAEK-ENL--NIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCC-CCHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHH-cCC--ceEEEEechhcccc-cCCccEEEE
Confidence 456799999999 4788888987 489999999999999999999887 566 78999999876533 348999986
Q ss_pred ccc-cCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 200 AAL-VGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 200 aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
... ..++.++..++++++.+.|+|||.+++
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 543 244667889999999999999998655
No 31
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.47 E-value=1.1e-12 Score=116.50 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=85.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA 200 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a 200 (318)
++++|||||||+ |..++.+|+. .++++|++||+|+++++.+++.+++ .|+. +++++++|+.+++ ..++||+|+..
T Consensus 42 ~~~~vLDiGcGt-G~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~-~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGA-GFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAE-LGLN-NVEIVNGRAEDFQ-HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCC-CccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHH-hCCC-CeEEEecchhhcc-ccCCccEEEeh
Confidence 588999999995 6777888864 4788999999999999999999888 7774 6999999999874 34589999977
Q ss_pred cccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
++ .+...+++.+.+.|+|||++++..+
T Consensus 117 ~~-----~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 117 AL-----ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred hh-----hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 63 2455688889999999999998753
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=7.7e-13 Score=122.60 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=81.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+|||||||+ |..+..+++++ |+++|+|+|+|+.+++.|++ .+++|+++|+.+++ ..++||+|+
T Consensus 27 ~~~~~~vLDlGcG~-G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~---------~~~~~~~~d~~~~~-~~~~fD~v~ 94 (255)
T PRK14103 27 AERARRVVDLGCGP-GNLTRYLARRW-PGAVIEALDSSPEMVAAARE---------RGVDARTGDVRDWK-PKPDTDVVV 94 (255)
T ss_pred CCCCCEEEEEcCCC-CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh---------cCCcEEEcChhhCC-CCCCceEEE
Confidence 36789999999997 55567788764 89999999999999999964 24789999998875 446899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....+++ ..++.++++++++.|||||.+++..
T Consensus 95 ~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQW-VPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred Eehhhhh-CCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 8765533 2467889999999999999998853
No 33
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=1.2e-12 Score=118.05 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=84.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||+ |+.+..+|+...++.+|+++|+++++++.|++.+.+ .|+..+++++.+|+.+.....+.||+|++
T Consensus 71 ~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~-~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 71 RPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER-LGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 5778999999996 666677887543467999999999999999999988 78878899999999875444568999997
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
.+... .+.+++.+.|+|||+|++-...+
T Consensus 149 ~~~~~-------~~~~~l~~~L~~gG~lvi~~~~~ 176 (205)
T PRK13944 149 TAAAS-------TIPSALVRQLKDGGVLVIPVEEG 176 (205)
T ss_pred ccCcc-------hhhHHHHHhcCcCcEEEEEEcCC
Confidence 76331 23346789999999998855433
No 34
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.45 E-value=1.4e-12 Score=120.06 Aligned_cols=138 Identities=8% Similarity=0.047 Sum_probs=105.1
Q ss_pred HHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH
Q 021008 80 FSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA 159 (318)
Q Consensus 80 ~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a 159 (318)
|-++-.+.+.+|+.-...|++..|... + ...++.|||..||| -|..+++||+ -|..|+|||+|+.|
T Consensus 12 W~~rw~~~~~~f~~~~pnp~L~~~~~~-------l---~~~~~~rvLvPgCG-kg~D~~~LA~---~G~~V~GvDlS~~A 77 (226)
T PRK13256 12 WLDRWQNDDVGFCQESPNEFLVKHFSK-------L---NINDSSVCLIPMCG-CSIDMLFFLS---KGVKVIGIELSEKA 77 (226)
T ss_pred HHHHHhcCCCCCccCCCCHHHHHHHHh-------c---CCCCCCeEEEeCCC-ChHHHHHHHh---CCCcEEEEecCHHH
Confidence 444445567788888889977655322 1 12456899999999 6999999998 49999999999999
Q ss_pred HHHHHHHhhcC----------CCCCCCeEEEEccccccCc---CCCCccEEEe-ccccCCChhHHHHHHHHHHHhccCCe
Q 021008 160 NSKALSLVSSD----------PDLSTRMFFHTTDIMNVSS---ALKDYEVVFL-AALVGMDKDEKIRVIDHLAKYMAPGA 225 (318)
Q Consensus 160 i~~Ar~~~~~~----------~gl~~ri~f~~gDa~~l~~---~l~~fD~V~~-aalvgm~~~~k~~vl~~l~r~LkpGg 225 (318)
++.+.+-..-. .--+.++++.+||..+++. ..+.||.||- ++++.++.+.+.++.+++.+.|+|||
T Consensus 78 i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg 157 (226)
T PRK13256 78 VLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNT 157 (226)
T ss_pred HHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 99986621100 0114689999999999863 2358999994 56778889999999999999999999
Q ss_pred EEEEEc
Q 021008 226 LLMLRS 231 (318)
Q Consensus 226 ~lv~r~ 231 (318)
.+++-.
T Consensus 158 ~llll~ 163 (226)
T PRK13256 158 QILLLV 163 (226)
T ss_pred EEEEEE
Confidence 876543
No 35
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=6.6e-13 Score=119.99 Aligned_cols=104 Identities=18% Similarity=0.283 Sum_probs=86.2
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL 202 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal 202 (318)
++|||||||. |..++.+|+.+ ++++|+|+|+|+++++.|++.+.. .|+..+++|+.+|..+.+.. +.||+|+....
T Consensus 1 ~~vLDiGcG~-G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~-~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGY-GSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRA-LGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCC-CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-cCCCcceEEEecccccCCCC-CCCCEeehHHH
Confidence 5899999996 55667788764 789999999999999999999988 89999999999999765433 47999986443
Q ss_pred cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 203 VGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+ ...++..+++++++.|+|||.+++.+
T Consensus 77 l~-~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 77 IH-HIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HH-hCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 32 22568899999999999999998865
No 36
>PRK04457 spermidine synthase; Provisional
Probab=99.45 E-value=6.1e-13 Score=124.71 Aligned_cols=148 Identities=17% Similarity=0.119 Sum_probs=103.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~ 198 (318)
.+|++||+|||| .|..+..+++. .|+++|++||+||++++.|++.+.. .+...+++++++|+.+..... ++||+|+
T Consensus 65 ~~~~~vL~IG~G-~G~l~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLG-GGSLAKFIYTY-LPDTRQTAVEINPQVIAVARNHFEL-PENGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCC-HhHHHHHHHHh-CCCCeEEEEECCHHHHHHHHHHcCC-CCCCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 578999999999 57777777765 4899999999999999999999876 556689999999998743332 4899999
Q ss_pred eccccC--CCh-hHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCCCccccC-CcEEEEEEcCchhHHHHHHHHhhc
Q 021008 199 LAALVG--MDK-DEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLL-GFEVLSVFHPTDEVINSVVLARKY 273 (318)
Q Consensus 199 ~aalvg--m~~-~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v~~~~l~-gf~~~~~~~p~~~VvNsvv~ark~ 273 (318)
++++-+ ++. -...++++++.+.|+|||++++.-.... -.++.+ .+.++ -|....+..|...-.|.++++.|.
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~--~~~~~~-l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~ 217 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD--KRYDRY-LERLESSFEGRVLELPAESHGNVAVFAFKS 217 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc--hhHHHH-HHHHHHhcCCcEEEEecCCCccEEEEEECC
Confidence 987542 111 1237899999999999999998642111 111111 12233 465322222333335778888764
No 37
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.44 E-value=2.7e-13 Score=124.78 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=88.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-++.|||||||| +|.-+..||+ .|+.|+|+|++++.|+.|+..+.. .|+. +.|.++.+.++...-++||+|..
T Consensus 58 l~g~~vLDvGCG-gG~Lse~mAr---~Ga~VtgiD~se~~I~~Ak~ha~e-~gv~--i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCG-GGILSEPLAR---LGASVTGIDASEKPIEVAKLHALE-SGVN--IDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCC-ccHhhHHHHH---CCCeeEEecCChHHHHHHHHhhhh-cccc--ccchhhhHHHHHhcCCCccEEEE
Confidence 478999999999 7888899998 499999999999999999999887 5553 78999999998655469999986
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.-.+. +.++...+++++++.+||||.+++..
T Consensus 131 mEVlE-Hv~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 131 MEVLE-HVPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred hhHHH-ccCCHHHHHHHHHHHcCCCcEEEEec
Confidence 55431 23566779999999999999999877
No 38
>PRK08317 hypothetical protein; Provisional
Probab=99.44 E-value=2e-12 Score=115.96 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=88.0
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+||+||||+ |..+..+++.+.++++|+|+|+|+.+++.|++... +...+++|+.+|+.+.+...+.||+|+
T Consensus 17 ~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~~~~~D~v~ 92 (241)
T PRK08317 17 VQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAA---GLGPNVEFVRGDADGLPFPDGSFDAVR 92 (241)
T ss_pred CCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---CCCCceEEEecccccCCCCCCCceEEE
Confidence 36789999999996 56667788765478899999999999999998733 245789999999988776666899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
...... ...+...+++++.+.|+|||.+++...
T Consensus 93 ~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 93 SDRVLQ-HLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred Eechhh-ccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 765432 235678899999999999999987653
No 39
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.43 E-value=1.2e-12 Score=118.56 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=82.8
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+|||||||+ |+.+..+|+...++.+|+++|+++++++.|++.+++ .|+ ++++|+++|+.+.......||+|+
T Consensus 75 ~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~-~g~-~~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 75 LKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-LGL-DNVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred CCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-CCC-CCeEEEECCcccCCcccCCCCEEE
Confidence 46889999999996 666678887643467899999999999999999998 787 689999999987644445899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.+-. ..+.+.+.+.|+|||++++--
T Consensus 152 ~~~~~-------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 152 VTAAG-------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EcCCc-------ccccHHHHHhcCcCcEEEEEE
Confidence 87632 234456789999999988754
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.43 E-value=1.7e-12 Score=119.61 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=80.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||++ ..+..+++ .+.+|+++|+|+++++.|++.... ..|+++|+.+++...++||+|+.
T Consensus 41 ~~~~~vLDiGcG~G-~~~~~l~~---~~~~v~~~D~s~~~l~~a~~~~~~-------~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 41 RKFTHVLDAGCGPG-WMSRYWRE---RGSQVTALDLSPPMLAQARQKDAA-------DHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred cCCCeEEEeeCCCC-HHHHHHHH---cCCeEEEEECCHHHHHHHHhhCCC-------CCEEEcCcccCcCCCCcEEEEEE
Confidence 45789999999985 44456665 489999999999999999876432 46899999998876678999996
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...+.+ ..+..+++.++.+.|+|||.+++..
T Consensus 110 ~~~l~~-~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQW-CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred Cchhhh-cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 554432 2466789999999999999998865
No 41
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.43 E-value=2e-12 Score=117.38 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=82.7
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+||+||||+ |+.+..+|+...++++|+++|+++++++.|++.++. .|+ .+++++++|+.+.....+.||+|+
T Consensus 74 ~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~-~g~-~~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 74 LKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-LGY-DNVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCC-CCeEEEECCcccCCCcCCCcCEEE
Confidence 46889999999995 676677887544568999999999999999999988 676 579999999987655556899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.+.+ .++...+.+.|||||++++-.
T Consensus 151 ~~~~~-------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 151 VTAAG-------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ECCCc-------ccchHHHHHhhCCCcEEEEEE
Confidence 87643 123345678999999998854
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=2.1e-12 Score=129.70 Aligned_cols=104 Identities=15% Similarity=0.232 Sum_probs=86.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||. |..++.+|+++ +++|+|+|+|+++++.|++... +...+++|+++|+.+.+...+.||+|+.
T Consensus 265 ~~~~~vLDiGcG~-G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~I~s 338 (475)
T PLN02336 265 KPGQKVLDVGCGI-GGGDFYMAENF--DVHVVGIDLSVNMISFALERAI---GRKCSVEFEVADCTKKTYPDNSFDVIYS 338 (475)
T ss_pred CCCCEEEEEeccC-CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh---cCCCceEEEEcCcccCCCCCCCEEEEEE
Confidence 5678999999996 55667888753 8899999999999999988764 3567899999999987765568999997
Q ss_pred cc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.. +.++ .++.++++++++.|||||.+++.+
T Consensus 339 ~~~l~h~--~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 339 RDTILHI--QDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCccccc--CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 54 3343 578899999999999999999865
No 43
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=2.7e-12 Score=118.64 Aligned_cols=101 Identities=19% Similarity=0.312 Sum_probs=81.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||+ |..+..+++.+ ++.+|+|+|+|+.+++.|++.. .+++|+.+|+.++. ...+||+|+.
T Consensus 30 ~~~~~vLDiGcG~-G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-~~~~fD~v~~ 99 (258)
T PRK01683 30 ENPRYVVDLGCGP-GNSTELLVERW-PAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-PPQALDLIFA 99 (258)
T ss_pred cCCCEEEEEcccC-CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-CCCCccEEEE
Confidence 6779999999997 55556788764 8899999999999999998764 34789999998764 3348999997
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....++ ..++.++++++++.|||||.+++..
T Consensus 100 ~~~l~~-~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 100 NASLQW-LPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccChhh-CCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 765532 2467889999999999999998864
No 44
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.40 E-value=3e-12 Score=118.68 Aligned_cols=109 Identities=9% Similarity=0.092 Sum_probs=90.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCC------cEEEEEeCChHHHHHHHHHhhcCCCCCCC--eEEEEccccccCcC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTT------TCFDNYDIDPSANSKALSLVSSDPDLSTR--MFFHTTDIMNVSSA 190 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~g------a~V~gvDid~~ai~~Ar~~~~~~~gl~~r--i~f~~gDa~~l~~~ 190 (318)
+..+.++|||++|+ |..++.+.+. .+. ++|+..||+|++++.+++...+ .++.++ +.|++||+.+||++
T Consensus 98 p~~~m~~lDvaGGT-GDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGT-GDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCCCeEEEecCCc-chhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccCCCC
Confidence 46779999999995 8888888763 344 8999999999999999999877 677554 99999999999999
Q ss_pred CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+..||..-++.-+- +-.+..+.+++.+|+|||||++.+-+
T Consensus 175 d~s~D~yTiafGIR-N~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIR-NVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcceeEEEeccee-cCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999877665331 22577889999999999999987544
No 45
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.40 E-value=3.9e-12 Score=113.87 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=86.6
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVV 197 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V 197 (318)
..++.+|||+|||+ |.-++.+|+...++.+|+++|+++++++.|++.++. .|+.+++.++.+|+.+..... ..||.|
T Consensus 38 ~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~-~g~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 38 LRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK-FGVLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence 46889999999997 555566776544578999999999999999999988 787789999999998743333 489999
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+.. ......++++.+.+.|+|||++++..
T Consensus 116 ~~~~----~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 116 FIGG----GSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred EECC----CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 9754 12455789999999999999998754
No 46
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.39 E-value=4e-12 Score=120.89 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=88.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||+ |.-++.+++++ |+.+++++|+ |++++.|++.+++ .|+.+|++++.+|..+.+ ..++|+|++
T Consensus 148 ~~~~~vlDiG~G~-G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~-~gl~~rv~~~~~d~~~~~--~~~~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGGI-GDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAE-KGVADRMRGIAVDIYKES--YPEADAVLF 221 (306)
T ss_pred CCCCEEEEeCCch-hHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHh-CCccceEEEEecCccCCC--CCCCCEEEe
Confidence 5678999999996 56667888775 8999999998 7999999999988 899999999999998643 345899887
Q ss_pred cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...+ .++.+...++++++++.|+|||++++-+
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6644 4455566889999999999999998876
No 47
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.38 E-value=2.6e-12 Score=114.79 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=86.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD~ 196 (318)
....+|||||||. |..++.+|+++ |++.|+|||+++++++.|++.... .|+. +++|+++|+.+++ .+.+.||.
T Consensus 15 ~~~~~ilDiGcG~-G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~-~~l~-ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGK-GRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK-LGLK-NLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCc-cHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH-hCCC-CEEEEccCHHHHHHhhCCCCceeE
Confidence 4567999999996 66667888775 899999999999999999998887 7774 8999999998754 22347999
Q ss_pred EEeccccCCChhH-------HHHHHHHHHHhccCCeEEEEEcC
Q 021008 197 VFLAALVGMDKDE-------KIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 197 V~~aalvgm~~~~-------k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|++..-.++++.. ..+++++++++|||||.|.+...
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9876433332211 15799999999999999988763
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.38 E-value=3.5e-12 Score=114.87 Aligned_cols=108 Identities=15% Similarity=0.086 Sum_probs=84.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-cccC--cCCCCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-MNVS--SALKDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-~~l~--~~l~~fD~ 196 (318)
..+.+|||||||+ |..++.+|+. .|+.+|+|||+|+++++.|++.+.. .++ .+++|+++|+ ..++ ...+.||.
T Consensus 39 ~~~~~VLDiGcGt-G~~~~~la~~-~p~~~v~gVD~s~~~i~~a~~~~~~-~~~-~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGK-GEFLVEMAKA-NPDINFIGIEVHEPGVGKALKKIEE-EGL-TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCC-CHHHHHHHHH-CCCccEEEEEechHHHHHHHHHHHH-cCC-CCEEEEecCHHHHHHHHcCccccce
Confidence 4678999999996 5556677765 4889999999999999999998887 666 6799999999 6654 34458999
Q ss_pred EEeccccCCCh-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVGMDK-------DEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvgm~~-------~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|++....++.. .....+++++++.|||||.+++..
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 98653222111 124679999999999999998875
No 49
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=2.3e-12 Score=104.42 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=82.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEEEe
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVVFL 199 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V~~ 199 (318)
|.||||+|||. |..++.+++.. ..+++|+|+||.+++.|++.+.. .++.++++++++|..++. ...++||+|+.
T Consensus 1 g~~vlD~~~G~-G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGS-GTFLLAALRRG--AARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTT-CHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcch-HHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 46999999995 67777777642 69999999999999999999998 888899999999999876 44568999996
Q ss_pred ccccC--C-C----hhHHHHHHHHHHHhccCCeEEEEE
Q 021008 200 AALVG--M-D----KDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 200 aalvg--m-~----~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
.--.+ + . .....++++++.+.|||||.+++-
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 54211 1 1 123468999999999999998764
No 50
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.36 E-value=2.9e-12 Score=117.29 Aligned_cols=135 Identities=15% Similarity=0.187 Sum_probs=98.3
Q ss_pred HHHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH
Q 021008 79 HFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS 158 (318)
Q Consensus 79 ~~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ 158 (318)
.|.++=.++..||+.-...|.+..|... + ...++.|||..||| -|..+++||++ |.+|+|||+|+.
T Consensus 5 ~W~~~w~~~~~~w~~~~~~p~L~~~~~~-------l---~~~~~~rvLvPgCG-~g~D~~~La~~---G~~VvGvDls~~ 70 (218)
T PF05724_consen 5 FWEERWQEGQTPWDQGEPNPALVEYLDS-------L---ALKPGGRVLVPGCG-KGYDMLWLAEQ---GHDVVGVDLSPT 70 (218)
T ss_dssp HHHHHHHTT--TT--TTSTHHHHHHHHH-------H---TTSTSEEEEETTTT-TSCHHHHHHHT---TEEEEEEES-HH
T ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHHHh-------c---CCCCCCeEEEeCCC-ChHHHHHHHHC---CCeEEEEecCHH
Confidence 3444444566789888889987777543 1 12667899999999 58999999983 999999999999
Q ss_pred HHHHHHHH-hhc--C---CC----CCCCeEEEEccccccCcCCC-CccEEE-eccccCCChhHHHHHHHHHHHhccCCeE
Q 021008 159 ANSKALSL-VSS--D---PD----LSTRMFFHTTDIMNVSSALK-DYEVVF-LAALVGMDKDEKIRVIDHLAKYMAPGAL 226 (318)
Q Consensus 159 ai~~Ar~~-~~~--~---~g----l~~ri~f~~gDa~~l~~~l~-~fD~V~-~aalvgm~~~~k~~vl~~l~r~LkpGg~ 226 (318)
|++.+.+- ... . .+ -..+|+|.+||..+++.... +||+|| -++++.++.+.+.++.+++.+.|+|||.
T Consensus 71 Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 71 AIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp HHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 99998432 210 0 01 13579999999999876553 899999 4567777899999999999999999999
Q ss_pred E
Q 021008 227 L 227 (318)
Q Consensus 227 l 227 (318)
+
T Consensus 151 ~ 151 (218)
T PF05724_consen 151 G 151 (218)
T ss_dssp E
T ss_pred E
Confidence 4
No 51
>PRK06922 hypothetical protein; Provisional
Probab=99.36 E-value=1.3e-11 Score=127.80 Aligned_cols=107 Identities=10% Similarity=0.142 Sum_probs=86.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V 197 (318)
.++.+|||||||+ |..+..+|+++ |+.+|+|+|+|+.+++.|++.... . +.+++++++|+.+++ +..++||+|
T Consensus 417 ~~g~rVLDIGCGT-G~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~-~--g~~ie~I~gDa~dLp~~fedeSFDvV 491 (677)
T PRK06922 417 IKGDTIVDVGAGG-GVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQN-E--GRSWNVIKGDAINLSSSFEKESVDTI 491 (677)
T ss_pred cCCCEEEEeCCCC-CHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh-c--CCCeEEEEcchHhCccccCCCCEEEE
Confidence 4688999999996 66666788764 899999999999999999987654 3 357899999999886 445689999
Q ss_pred EeccccC-C-----------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALVG-M-----------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalvg-m-----------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.....+ + +.++..+++++++++|||||.+++.+
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 8654321 1 23577899999999999999999976
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.35 E-value=1.3e-11 Score=109.27 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=82.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||+ |..++.++++ .++.+|+++|+|+++++.|+++++. .++ .+++++++|+... . .+.||+|++
T Consensus 30 ~~~~~vLDiG~G~-G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~n~~~-~~~-~~i~~~~~d~~~~-~-~~~~D~v~~ 103 (187)
T PRK08287 30 HRAKHLIDVGAGT-GSVSIEAALQ-FPSLQVTAIERNPDALRLIKENRQR-FGC-GNIDIIPGEAPIE-L-PGKADAIFI 103 (187)
T ss_pred CCCCEEEEECCcC-CHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-hCC-CCeEEEecCchhh-c-CcCCCEEEE
Confidence 5788999999996 6767778876 4789999999999999999999887 666 4799999998532 1 247999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.... ....++++.+.+.|+|||.+++..
T Consensus 104 ~~~~----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 104 GGSG----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCCc----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 7532 234678999999999999998854
No 53
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=7.1e-12 Score=118.47 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=91.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..+|++||||||| -|.+++.+|++| |++|+|+++|+++.+.+++.+++ .|+..++++...|-.++.. .||-|.
T Consensus 70 L~~G~~lLDiGCG-WG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~-~gl~~~v~v~l~d~rd~~e---~fDrIv 142 (283)
T COG2230 70 LKPGMTLLDIGCG-WGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAA-RGLEDNVEVRLQDYRDFEE---PFDRIV 142 (283)
T ss_pred CCCCCEEEEeCCC-hhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHH-cCCCcccEEEecccccccc---ccceee
Confidence 4899999999999 577779999976 99999999999999999999998 9999999999999888753 499776
Q ss_pred e-ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 L-AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~-aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
. ..+-++-.+....+|..+.+.|+|||++++.+
T Consensus 143 SvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 143 SVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 3 33223345779999999999999999998877
No 54
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.35 E-value=1.6e-11 Score=110.40 Aligned_cols=104 Identities=17% Similarity=0.273 Sum_probs=81.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.++||+||| -|--+++||+ .|..|+++|+|+.+++.+++++++ .++. |+..+.|..+...+ ..||+|+.
T Consensus 29 ~~~g~~LDlgcG-~GRNalyLA~---~G~~VtAvD~s~~al~~l~~~a~~-~~l~--i~~~~~Dl~~~~~~-~~yD~I~s 100 (192)
T PF03848_consen 29 LKPGKALDLGCG-EGRNALYLAS---QGFDVTAVDISPVALEKLQRLAEE-EGLD--IRTRVADLNDFDFP-EEYDFIVS 100 (192)
T ss_dssp S-SSEEEEES-T-TSHHHHHHHH---TT-EEEEEESSHHHHHHHHHHHHH-TT-T--EEEEE-BGCCBS-T-TTEEEEEE
T ss_pred cCCCcEEEcCCC-CcHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHhh-cCce--eEEEEecchhcccc-CCcCEEEE
Confidence 578899999999 5899999998 499999999999999999999988 5664 99999999876543 48999874
Q ss_pred cc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.. +..++.+...++++.+.+.++|||.+++..
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 32 224477888999999999999999987754
No 55
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.33 E-value=4.1e-12 Score=115.35 Aligned_cols=111 Identities=18% Similarity=0.302 Sum_probs=89.7
Q ss_pred HHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC
Q 021008 111 FNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA 190 (318)
Q Consensus 111 ~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~ 190 (318)
.+++.+.-...+.+|.|+|||| |-++..|++++ |+++|+|||-|++|++.|++... +.+|..||+.+.. .
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGp-GnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp-------~~~f~~aDl~~w~-p 89 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGP-GNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLP-------DATFEEADLRTWK-P 89 (257)
T ss_pred HHHHhhCCccccceeeecCCCC-CHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCC-------CCceecccHhhcC-C
Confidence 4555544457889999999998 66777888885 99999999999999999976543 4799999999874 3
Q ss_pred CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
...+|++|..|..++ .++-.++|..+...|+|||+|.+--+
T Consensus 90 ~~~~dllfaNAvlqW-lpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 90 EQPTDLLFANAVLQW-LPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CCccchhhhhhhhhh-ccccHHHHHHHHHhhCCCceEEEECC
Confidence 358999997665543 25678899999999999999999664
No 56
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.33 E-value=1.5e-11 Score=115.31 Aligned_cols=115 Identities=22% Similarity=0.329 Sum_probs=87.0
Q ss_pred CCCCEEEEEccCCChHH----HHHHHHhCC----CCcEEEEEeCChHHHHHHHHHhh------c----------------
Q 021008 120 RFPTKIAFIGSGPLPLT----SIVLAINHL----TTTCFDNYDIDPSANSKALSLVS------S---------------- 169 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~t----ai~LA~~~~----~ga~V~gvDid~~ai~~Ar~~~~------~---------------- 169 (318)
.++.||+++|||+ |-. ++.+++... ++.+|+|+|+|+++++.|++.+- .
T Consensus 98 ~~~~ri~d~GCgt-Gee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 98 GRRVRIWSAGCST-GEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCEEEEeccccC-ChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 4568999999996 542 344554321 25799999999999999997531 0
Q ss_pred ---CCCCCCCeEEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008 170 ---DPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA 235 (318)
Q Consensus 170 ---~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~ 235 (318)
..++..+|+|.++|+.+.+...+.||+|+... +..++.+.+.++++++++.|+|||.|++-.+..+
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 01133589999999999766567899999754 3355778899999999999999999999775544
No 57
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.33 E-value=1.5e-11 Score=119.52 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=84.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||+ |..++.+++.+ ++.+|+++|+|+++++.|++.... .+++++.+|+.+++...+.||+|+.
T Consensus 112 ~~~~~VLDLGcGt-G~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGT-GFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCC-cHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEE
Confidence 4678999999997 56566777654 778999999999999999987543 5789999999998876678999987
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...+. ...++.++++++++.|+|||++++..
T Consensus 185 ~~~L~-~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 185 AGSIE-YWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred cChhh-hCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 55332 12466789999999999999987754
No 58
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.32 E-value=2.7e-11 Score=107.96 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=97.9
Q ss_pred hhHHHHHHHhhcc--cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008 106 LSQLEFNILTQHC--SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD 183 (318)
Q Consensus 106 L~~~E~~~l~~~~--~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD 183 (318)
+++.|..++.-.. +.++++++|||||++.+| +-+| ...|..+|++||.|+++++..+++.++ +| -++++++.||
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~-fg-~~n~~vv~g~ 92 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-IEWA-LAGPSGRVIAIERDEEALELIERNAAR-FG-VDNLEVVEGD 92 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-HHHH-HhCCCceEEEEecCHHHHHHHHHHHHH-hC-CCcEEEEecc
Confidence 6777866554332 488899999999987776 4556 345999999999999999999999999 89 5999999999
Q ss_pred ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+-+...++.+||.||+-.- ..-..+++.+...|||||+||++-
T Consensus 93 Ap~~L~~~~~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 93 APEALPDLPSPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred chHhhcCCCCCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 9887666668999998874 355789999999999999999876
No 59
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.31 E-value=3.9e-11 Score=108.22 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=88.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+||+||||+ |..+..+++.+.+..+|+++|+++.+++.+++.+.. .++..+++|+.+|+.+.+...+.||+|+.
T Consensus 50 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 50 RPGDKVLDLACGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD-LGLSGNVEFVQGDAEALPFPDNSFDAVTI 127 (239)
T ss_pred CCCCeEEEeCCCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-cccccCeEEEecccccCCCCCCCccEEEE
Confidence 4678999999997 556667776542269999999999999999998876 66778899999999988766568999987
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...++ ...+...+++.+.+.|+|||.+++.+
T Consensus 128 ~~~l~-~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 128 AFGLR-NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ecccc-cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 65443 23567889999999999999988754
No 60
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.31 E-value=3e-11 Score=107.71 Aligned_cols=104 Identities=10% Similarity=0.049 Sum_probs=82.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~ 198 (318)
.++.+|||+|||+ |..++.+|+. .++.+|++||+|+++++.|++++++ .++ .+++++.+|+.+..... ..+|.++
T Consensus 39 ~~~~~VLDiG~G~-G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~-~~~-~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGT-GTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDR-FGV-KNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCC-CHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHH-hCC-CCeEEEECchHHHHhhCCCCCCEEE
Confidence 5778999999996 4555667764 4789999999999999999999987 777 57999999997632223 3578887
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+... .+..++++++.+.|+|||.+++...
T Consensus 115 ~~~~-----~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 115 IEGG-----RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EECC-----cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 7542 3457899999999999999988763
No 61
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.30 E-value=3.8e-12 Score=118.41 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=83.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC----CeEEEEccccccCcCCCCccEE
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST----RMFFHTTDIMNVSSALKDYEVV 197 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~----ri~f~~gDa~~l~~~l~~fD~V 197 (318)
+++||||||| +|+-++-||+ .|++|+|||+++++++.|++....++-+.. |++|.+.|+.++.. .||.|
T Consensus 90 g~~ilDvGCG-gGLLSepLAr---lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~---~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCG-GGLLSEPLAR---LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG---KFDAV 162 (282)
T ss_pred CceEEEeccC-ccccchhhHh---hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc---cccee
Confidence 4889999999 7999999997 499999999999999999999655554555 58888888877632 59988
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...-.+. +-.++..++..+.++|||||.+.+..
T Consensus 163 vcsevle-HV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVLE-HVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHHH-HHhCHHHHHHHHHHHhCCCCceEeee
Confidence 7543331 34788999999999999999998866
No 62
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.30 E-value=3.6e-11 Score=108.11 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=83.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+.+|||||||++ ..+..+++. .+..+|+++|+++++++.+++... .+++|+++|+.+.+...+.||+|+.
T Consensus 33 ~~~~~vLDlG~G~G-~~~~~l~~~-~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 33 FIPASVLDIGCGTG-YLTRALLKR-FPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCCeEEEECCCcc-HHHHHHHHh-CCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEE
Confidence 45689999999975 455667765 478899999999999999887543 4789999999998766668999997
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....+. ..+..+++.++.+.|+|||.+++..
T Consensus 105 ~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 105 NLALQW-CDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 765442 2467889999999999999999865
No 63
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.30 E-value=2.9e-11 Score=116.60 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=82.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+++|||||||. |.-++.+++. ....|+|||+|+.++..++..... .+...+++|+.+|+.+++. .+.||+|+.
T Consensus 121 l~g~~VLDIGCG~-G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~-~~~~~~i~~~~~d~e~lp~-~~~FD~V~s 195 (322)
T PRK15068 121 LKGRTVLDVGCGN-GYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKL-LGNDQRAHLLPLGIEQLPA-LKAFDTVFS 195 (322)
T ss_pred CCCCEEEEeccCC-cHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHh-cCCCCCeEEEeCCHHHCCC-cCCcCEEEE
Confidence 5679999999995 6777788864 123699999999999876654443 3345689999999999986 568999997
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...+. ...+..+++.++++.|+|||.+++..
T Consensus 196 ~~vl~-H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 196 MGVLY-HRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CChhh-ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 54332 23567889999999999999998754
No 64
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.30 E-value=4.2e-11 Score=108.33 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=79.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+||+||||+ |..+..+++. .++.+++|||+|+++++.|++... ++++..+|+.+ ++..++||+|+.
T Consensus 42 ~~~~~VLDiGCG~-G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d~~~-~~~~~sfD~V~~ 111 (204)
T TIGR03587 42 PKIASILELGANI-GMNLAALKRL-LPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGSLFD-PFKDNFFDLVLT 111 (204)
T ss_pred CCCCcEEEEecCC-CHHHHHHHHh-CCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEeeccC-CCCCCCEEEEEE
Confidence 5778999999995 6777778764 478999999999999999987542 36788999988 666779999997
Q ss_pred cccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...+ +++.++..++++++.+.+ ++.+++-+
T Consensus 112 ~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 112 KGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 6533 667678899999999987 34555543
No 65
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.29 E-value=3.8e-11 Score=108.62 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=83.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||. |..+..+++ .+.+|+|+|+|+++++.|++.... .+...++.|.++|+.+++ ++||+|+.
T Consensus 54 ~~~~~vLDiGcG~-G~~~~~la~---~~~~v~gvD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~~~---~~fD~ii~ 125 (219)
T TIGR02021 54 LKGKRVLDAGCGT-GLLSIELAK---RGAIVKAVDISEQMVQMARNRAQG-RDVAGNVEFEVNDLLSLC---GEFDIVVC 125 (219)
T ss_pred CCCCEEEEEeCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECChhhCC---CCcCEEEE
Confidence 4678999999996 566667776 378999999999999999998876 566678999999998875 68999986
Q ss_pred cccc-CCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
...+ +++.++..++++++.+.+++|+.+.+.
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5443 555567788999999999988777664
No 66
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.29 E-value=3.5e-11 Score=112.82 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=75.2
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCC--CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLT--TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~--ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~ 196 (318)
...+.+|||||||. |..+..+++.+.. ++.|+|+|+|+++++.|++.. .+++|.++|+.++|+..++||+
T Consensus 83 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~sfD~ 154 (272)
T PRK11088 83 DEKATALLDIGCGE-GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQSLDA 154 (272)
T ss_pred CCCCCeEEEECCcC-CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCceeE
Confidence 35668999999996 5555667764321 358999999999999997642 3588999999999887779999
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|+.. +. ...+++++|+|||||.+++...
T Consensus 155 I~~~-~~-------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 155 IIRI-YA-------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred EEEe-cC-------CCCHHHHHhhccCCCEEEEEeC
Confidence 9843 21 1245788999999999988763
No 67
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.29 E-value=2.9e-11 Score=110.65 Aligned_cols=106 Identities=15% Similarity=0.230 Sum_probs=96.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----Cc--CCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SS--ALKD 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~--~l~~ 193 (318)
..++|.++||.= .|+|++.+|....++++|+++|+|+++.+++.++.+. +|..++|+|++|++.+- .. +-+.
T Consensus 72 ~~ak~~lelGvf-TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~-agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVF-TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL-AGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEecc-cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-ccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 588999999997 6999999998876799999999999999999999998 99999999999999862 12 2348
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
||++|++| ++..+...++++.+.+|+||++++++
T Consensus 150 fDfaFvDa----dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 150 FDFAFVDA----DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eeEEEEcc----chHHHHHHHHHHHhhcccccEEEEec
Confidence 99999999 78999999999999999999999998
No 68
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.28 E-value=1e-10 Score=104.37 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=84.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.++.+||++|||+ |..+..+++.+ +. .+++++|+++.+++.+++... ...+++|+.+|+.+.+...+.||+|+
T Consensus 38 ~~~~~vldiG~G~-G~~~~~~~~~~-~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~i~ 111 (223)
T TIGR01934 38 FKGQKVLDVACGT-GDLAIELAKSA-PDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADAEALPFEDNSFDAVT 111 (223)
T ss_pred CCCCeEEEeCCCC-ChhHHHHHHhc-CCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecchhcCCCCCCcEEEEE
Confidence 4788999999997 55556677664 43 799999999999999988764 34689999999999876556899998
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....++ ...+...+++++.+.|+|||++++.+
T Consensus 112 ~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 112 IAFGLR-NVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EeeeeC-CcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 654332 23567789999999999999998765
No 69
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.27 E-value=2.9e-12 Score=101.44 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=59.6
Q ss_pred EEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEEEecccc
Q 021008 126 AFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVVFLAALV 203 (318)
Q Consensus 126 L~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V~~aalv 203 (318)
||||||++-++ ..+++++ ++++++|+|+|+.+++.|++.+.. .+. ........+..+..... ++||+|+....+
T Consensus 1 LdiGcG~G~~~-~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLL-RALLEEL-PDARYTGVDISPSMLERARERLAE-LGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TT-TTHHHHC--EEEEEEEESSSSTTSTTCCCHHH-CT----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHH-HHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh-cCC-cceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999975555 4555554 899999999999999999888877 333 33444444444432222 389999976544
Q ss_pred CCChhHHHHHHHHHHHhccCCeEE
Q 021008 204 GMDKDEKIRVIDHLAKYMAPGALL 227 (318)
Q Consensus 204 gm~~~~k~~vl~~l~r~LkpGg~l 227 (318)
++ .+++.++++++++.|||||.|
T Consensus 77 ~~-l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HH-LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---S-HHHHHHHHTTT-TSS-EE
T ss_pred hh-hhhHHHHHHHHHHHcCCCCCC
Confidence 32 278889999999999999986
No 70
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=5.6e-11 Score=117.19 Aligned_cols=102 Identities=11% Similarity=0.113 Sum_probs=80.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+|||||||.+ ..++.+|++ .|++|+|+|+|+++++.|++..+. + ++++..+|..+++ ++||.|+
T Consensus 165 l~~g~rVLDIGcG~G-~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~~---l--~v~~~~~D~~~l~---~~fD~Iv 233 (383)
T PRK11705 165 LKPGMRVLDIGCGWG-GLARYAAEH--YGVSVVGVTISAEQQKLAQERCAG---L--PVEIRLQDYRDLN---GQFDRIV 233 (383)
T ss_pred CCCCCEEEEeCCCcc-HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhcc---C--eEEEEECchhhcC---CCCCEEE
Confidence 367889999999964 555678875 389999999999999999988754 2 4889999987762 4899987
Q ss_pred eccc-cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAAL-VGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aal-vgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.... .++......++++++.+.|||||.+++..
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4432 23334566889999999999999998854
No 71
>PRK00811 spermidine synthase; Provisional
Probab=99.24 E-value=6.3e-11 Score=112.23 Aligned_cols=112 Identities=11% Similarity=0.110 Sum_probs=84.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CCC--CCCeEEEEccccccCcC-CCCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PDL--STRMFFHTTDIMNVSSA-LKDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~gl--~~ri~f~~gDa~~l~~~-l~~fD 195 (318)
..|++||+||||. |.++..+++ +.+..+|++||+|+++++.|++.+... .+. ..|++++.+|+.+.... .++||
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 6789999999995 666666665 334569999999999999999988641 122 57999999999874332 34899
Q ss_pred EEEeccccCCCh---hHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 196 VVFLAALVGMDK---DEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 196 ~V~~aalvgm~~---~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
+|++++.-+... --..++++.+.+.|+|||++++...+
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 999986432211 12367899999999999999987543
No 72
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.24 E-value=1.1e-10 Score=102.14 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=82.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
...++|||+|||. |.-++.+|++ .+.++|+++|+|+.|++.|++.++. .++.. ++++.+|..+-.. ..+||+|+.
T Consensus 30 ~~~~~vLDlG~G~-G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~-n~~~~-v~~~~~d~~~~~~-~~~fD~Iv~ 104 (170)
T PF05175_consen 30 HKGGRVLDLGCGS-GVISLALAKR-GPDAKVTAVDINPDALELAKRNAER-NGLEN-VEVVQSDLFEALP-DGKFDLIVS 104 (170)
T ss_dssp HTTCEEEEETSTT-SHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHH-TTCTT-EEEEESSTTTTCC-TTCEEEEEE
T ss_pred ccCCeEEEecCCh-HHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHh-cCccc-ccccccccccccc-ccceeEEEE
Confidence 3788999999996 5666778875 4888999999999999999999998 77766 9999999987533 458999986
Q ss_pred cccc--CCC--hhHHHHHHHHHHHhccCCeEEEE
Q 021008 200 AALV--GMD--KDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 200 aalv--gm~--~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
.--. +.+ .....+++++..++|+|||.+.+
T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 4311 110 13467899999999999998743
No 73
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.23 E-value=1.3e-10 Score=110.25 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||+|||+ |.-++.+|++ .++++|+++|+|+++++.|+++++. .|+.++++|+++|+.+.. ....||+|+.
T Consensus 120 ~~~~~vLDlG~Gs-G~i~~~la~~-~~~~~v~avDis~~al~~A~~n~~~-~~~~~~i~~~~~D~~~~~-~~~~fD~Iv~ 195 (284)
T TIGR03533 120 EPVKRILDLCTGS-GCIAIACAYA-FPEAEVDAVDISPDALAVAEINIER-HGLEDRVTLIQSDLFAAL-PGRKYDLIVS 195 (284)
T ss_pred CCCCEEEEEeCch-hHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECchhhcc-CCCCccEEEE
Confidence 4568999999996 5666778875 4789999999999999999999998 788889999999987532 2247999986
Q ss_pred cc-------ccCCC-----------------hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 200 AA-------LVGMD-----------------KDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 200 aa-------lvgm~-----------------~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
.- +..++ .....+++..+.++|+|||.+++..++
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 31 00000 123467899999999999999987653
No 74
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.22 E-value=2.9e-10 Score=102.71 Aligned_cols=103 Identities=20% Similarity=0.239 Sum_probs=80.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||+ |..+..+++. +..|+|+|+|+.+++.|++.... .+...+++|+.+|.. ...+.||+|+.
T Consensus 62 ~~~~~vLDvGcG~-G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~---~~~~~fD~v~~ 133 (230)
T PRK07580 62 LTGLRILDAGCGV-GSLSIPLARR---GAKVVASDISPQMVEEARERAPE-AGLAGNITFEVGDLE---SLLGRFDTVVC 133 (230)
T ss_pred CCCCEEEEEeCCC-CHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHh-cCCccCcEEEEcCch---hccCCcCEEEE
Confidence 5678999999996 5566778763 67899999999999999999887 677779999999943 23458999986
Q ss_pred cccc-CCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
...+ +++.+...++++.+.+.+++|+++.+.
T Consensus 134 ~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~ 165 (230)
T PRK07580 134 LDVLIHYPQEDAARMLAHLASLTRGSLIFTFA 165 (230)
T ss_pred cchhhcCCHHHHHHHHHHHHhhcCCeEEEEEC
Confidence 5433 556667778999998877666655543
No 75
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.22 E-value=1.9e-10 Score=103.68 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=78.8
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+||+||||. |+.+..+++. ..+|+++|+++++++.|++.+++ .|+. +++++.+|+.+.....+.||+|+
T Consensus 76 ~~~~~~VLeiG~Gs-G~~t~~la~~---~~~v~~vd~~~~~~~~a~~~~~~-~~~~-~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 76 LKPGDRVLEIGTGS-GYQAAVLAHL---VRRVFSVERIKTLQWEAKRRLKQ-LGLH-NVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCCEEEEECCCc-cHHHHHHHHH---hCEEEEEeCCHHHHHHHHHHHHH-CCCC-ceEEEECCcccCCCcCCCcCEEE
Confidence 36779999999996 5556678864 35899999999999999999988 6774 59999999876433346899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+.+.. ..+.+.+.+.|+|||++++--.
T Consensus 150 ~~~~~-------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAA-------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCc-------hhhhHHHHHhcCCCcEEEEEEc
Confidence 87632 2234567899999999887554
No 76
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.22 E-value=1.9e-10 Score=103.51 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=76.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..-++++++|||.+ .-+..||.+ --+++++|+++.|+++||+..+. . .+|+|+++|+.+.. ..+.||+|.+
T Consensus 42 ~ry~~alEvGCs~G-~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~---~-~~V~~~~~dvp~~~-P~~~FDLIV~ 112 (201)
T PF05401_consen 42 RRYRRALEVGCSIG-VLTERLAPR---CDRLLAVDISPRALARARERLAG---L-PHVEWIQADVPEFW-PEGRFDLIVL 112 (201)
T ss_dssp SSEEEEEEE--TTS-HHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEE
T ss_pred cccceeEecCCCcc-HHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCC---C-CCeEEEECcCCCCC-CCCCeeEEEE
Confidence 34479999999964 444568875 46899999999999999998775 3 68999999997752 3458999987
Q ss_pred cccc-CC-ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 200 AALV-GM-DKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 200 aalv-gm-~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+.+. -+ +.++..++++.+.+.|+|||.||+-+.
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 7633 22 356788899999999999999999774
No 77
>PLN02366 spermidine synthase
Probab=99.21 E-value=1.1e-10 Score=112.09 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=84.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC--CC-CCCeEEEEccccccCcCC--CCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP--DL-STRMFFHTTDIMNVSSAL--KDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~--gl-~~ri~f~~gDa~~l~~~l--~~f 194 (318)
..|+|||+||+|. |.++..+++ |.+..+|+.||||+++++.|++.+.. . ++ +.|++++.+|+.+..... +.|
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~-~~~~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPD-LAVGFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhh-hccccCCCceEEEEChHHHHHhhccCCCC
Confidence 6789999999995 666677775 43347899999999999999998764 2 23 469999999997653332 479
Q ss_pred cEEEeccccCCChh---HHHHHHHHHHHhccCCeEEEEEcC
Q 021008 195 EVVFLAALVGMDKD---EKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 195 D~V~~aalvgm~~~---~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|+|++++.-+.... -..++++.++++|+|||++++...
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 99999875422111 246899999999999999987653
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.21 E-value=1.4e-10 Score=114.36 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=88.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V 197 (318)
..+..+||||||. |.-++.+|+++ |+..|+|||+++.+++.|.+.+.. .|+ .++.++.+|+..+. ...+++|.|
T Consensus 121 ~~~p~vLEIGcGs-G~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~-~gL-~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGS-GRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIEL-LNL-KNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcc-cHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEECCHHHhhhhCCCCceeEE
Confidence 4567999999996 66667888876 999999999999999999999887 787 46999999997642 344589999
Q ss_pred EeccccCCChhHH-----HHHHHHHHHhccCCeEEEEEcC
Q 021008 198 FLAALVGMDKDEK-----IRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 198 ~~aalvgm~~~~k-----~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|+.--.+|++..- ..++++++|+|+|||.+.+++.
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9865455543221 5789999999999999999874
No 79
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.20 E-value=2e-10 Score=109.61 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=85.4
Q ss_pred hHHHHHHHhhcc------cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE
Q 021008 107 SQLEFNILTQHC------SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180 (318)
Q Consensus 107 ~~~E~~~l~~~~------~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~ 180 (318)
++.|.+.|..++ ..++.+||++|||++-.|.. |++....+.+|++||+|+++++.|++.... .....++.++
T Consensus 43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~-Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~-~~p~~~v~~i 120 (301)
T TIGR03438 43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRL-LLDALRQPARYVPIDISADALKESAAALAA-DYPQLEVHGI 120 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHH-HHHhhccCCeEEEEECCHHHHHHHHHHHHh-hCCCceEEEE
Confidence 555555444433 24668999999998666654 554432278999999999999999887665 2234578889
Q ss_pred EccccccCcCCCCc----c-EEEeccccC-CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 181 TTDIMNVSSALKDY----E-VVFLAALVG-MDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 181 ~gDa~~l~~~l~~f----D-~V~~aalvg-m~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+||..+...-...+ + ++|..+..+ ++.++..++|+++++.|+|||.+++..
T Consensus 121 ~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 121 CADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 99987632111222 2 444444443 467788899999999999999998744
No 80
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.5e-10 Score=107.54 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=91.6
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..+++||++.|.|.+-+| .+||....|.++|+++|+.++..+.|+++++. .|+++++++..+|+.+..... .||+||
T Consensus 92 i~pg~rVlEAGtGSG~lt-~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~v~~~~~Dv~~~~~~~-~vDav~ 168 (256)
T COG2519 92 ISPGSRVLEAGTGSGALT-AYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDRVTLKLGDVREGIDEE-DVDAVF 168 (256)
T ss_pred CCCCCEEEEcccCchHHH-HHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccceEEEecccccccccc-ccCEEE
Confidence 489999999999976565 46776556779999999999999999999999 899999999999999875444 899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
++- ++..++++++.+.|+|||.+++-.+
T Consensus 169 LDm------p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 169 LDL------PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred EcC------CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 885 4678899999999999999998773
No 81
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.20 E-value=3.8e-10 Score=108.66 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=80.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV 197 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V 197 (318)
..++++|||||||. |+-++.++.. |+ .|+|||+|+.++..++..-+. .+...++.+..+++.+++.. ..||+|
T Consensus 119 ~~~g~~VLDvGCG~-G~~~~~~~~~---g~~~v~GiDpS~~ml~q~~~~~~~-~~~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 119 PLKGRTILDVGCGS-GYHMWRMLGH---GAKSLVGIDPTVLFLCQFEAVRKL-LDNDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred CCCCCEEEEeccCC-cHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHHHHH-hccCCCeEEEECCHHHCCCC-CCcCEE
Confidence 36789999999996 6666666653 43 799999999998876443332 23346899999999998753 489999
Q ss_pred Eecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|....+ ++ .+..+++.++++.|||||.|++..
T Consensus 193 ~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 193 FSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEE
Confidence 976533 43 466789999999999999998754
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.19 E-value=2.3e-10 Score=106.15 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=81.2
Q ss_pred HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008 104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD 183 (318)
Q Consensus 104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD 183 (318)
...++.-...+... ..++++|||||||+ |..++.+++ . ...+|+|+|+|+.+++.|+++++. .++..++.+..+|
T Consensus 103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGs-G~l~i~~~~-~-g~~~v~giDis~~~l~~A~~n~~~-~~~~~~~~~~~~~ 177 (250)
T PRK00517 103 HPTTRLCLEALEKL-VLPGKTVLDVGCGS-GILAIAAAK-L-GAKKVLAVDIDPQAVEAARENAEL-NGVELNVYLPQGD 177 (250)
T ss_pred CHHHHHHHHHHHhh-cCCCCEEEEeCCcH-HHHHHHHHH-c-CCCeEEEEECCHHHHHHHHHHHHH-cCCCceEEEccCC
Confidence 34444444444332 36789999999996 777777665 2 233599999999999999999987 6776666655443
Q ss_pred ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
. .||+|+.... .....+++.++.+.|||||.+++..
T Consensus 178 ~--------~fD~Vvani~----~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 178 L--------KADVIVANIL----ANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred C--------CcCEEEEcCc----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 7999986432 2455678999999999999999853
No 83
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=3.2e-10 Score=109.49 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=81.2
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+||+||||+ |..++.+|+.......|+++|+++++++.|++.++. .|. +++.++++|+.+.+.+.+.||+|+
T Consensus 78 i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~-~g~-~nV~~i~gD~~~~~~~~~~fD~Ii 154 (322)
T PRK13943 78 LDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-LGI-ENVIFVCGDGYYGVPEFAPYDVIF 154 (322)
T ss_pred CCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEeCChhhcccccCCccEEE
Confidence 36778999999996 677777887642345899999999999999999887 776 679999999987665566899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++..+ ..+...+.+.|+|||++++-.
T Consensus 155 ~~~g~-------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 155 VTVGV-------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ECCch-------HHhHHHHHHhcCCCCEEEEEe
Confidence 87532 112344678999999988754
No 84
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.19 E-value=7.4e-11 Score=107.42 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=78.5
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.|||+|||| .|+.+.+||+...+...|++||++++..+.|++.++. .|. .++++++||+..-..+.+.||.|+
T Consensus 70 l~pg~~VLeIGtG-sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~-~nv~~~~gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 70 LKPGDRVLEIGTG-SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGI-DNVEVVVGDGSEGWPEEAPFDRII 146 (209)
T ss_dssp C-TT-EEEEES-T-TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTT-HSEEEEES-GGGTTGGG-SEEEEE
T ss_pred cCCCCEEEEecCC-CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hcc-CceeEEEcchhhccccCCCcCEEE
Confidence 4789999999999 5888888997554567899999999999999999998 666 489999999987544456899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+.+-+. +.... +.+.|++||++++--.
T Consensus 147 v~~a~~---~ip~~----l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 147 VTAAVP---EIPEA----LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ESSBBS---S--HH----HHHTEEEEEEEEEEES
T ss_pred Eeeccc---hHHHH----HHHhcCCCcEEEEEEc
Confidence 877552 22233 4678999999988554
No 85
>PRK05785 hypothetical protein; Provisional
Probab=99.19 E-value=2.6e-10 Score=104.64 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=74.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||+ |..+..+++.. +.+|+|+|+|++|++.|++. ..++++|+.++|+..++||+|+.
T Consensus 50 ~~~~~VLDlGcGt-G~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 50 GRPKKVLDVAAGK-GELSYHFKKVF--KYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCCeEEEEcCCC-CHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEe
Confidence 3578999999997 45566787753 68999999999999999752 13578999999988889999997
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCe
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGA 225 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg 225 (318)
...+. ...+..+++++++|+|||+.
T Consensus 117 ~~~l~-~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 117 SFALH-ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cChhh-ccCCHHHHHHHHHHHhcCce
Confidence 65443 34678899999999999954
No 86
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.18 E-value=1.3e-10 Score=98.32 Aligned_cols=96 Identities=16% Similarity=0.262 Sum_probs=72.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||.+ ..+..+++. |.+|+|+|+++.+++. ..+.+...+..+.+...+.||+|+.
T Consensus 21 ~~~~~vLDiGcG~G-~~~~~l~~~---~~~~~g~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 21 KPGKRVLDIGCGTG-SFLRALAKR---GFEVTGVDISPQMIEK------------RNVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp TTTSEEEEESSTTS-HHHHHHHHT---TSEEEEEESSHHHHHH------------TTSEEEEEECHTHHCHSSSEEEEEE
T ss_pred CCCCEEEEEcCCCC-HHHHHHHHh---CCEEEEEECCHHHHhh------------hhhhhhhhhhhhhhccccchhhHhh
Confidence 68899999999964 555666763 7799999999999988 2233444444444344468999997
Q ss_pred cccc-CCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 200 AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 200 aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
...+ ++ .+..++++++.+.|||||.+++....
T Consensus 85 ~~~l~~~--~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 85 NDVLEHL--PDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ESSGGGS--SHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred HHHHhhc--ccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 6544 43 47899999999999999999998853
No 87
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=3.8e-10 Score=107.00 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=87.4
Q ss_pred HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008 104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD 183 (318)
Q Consensus 104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD 183 (318)
...+++-...+.+. ..++++|||||||+ |..++.+++. ...+|+++|+|+.+++.|++++.. .++..++.+..+|
T Consensus 143 h~tt~l~l~~l~~~-~~~g~~VLDvGcGs-G~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~-n~~~~~~~~~~~~ 217 (288)
T TIGR00406 143 HPTTSLCLEWLEDL-DLKDKNVIDVGCGS-GILSIAALKL--GAAKVVGIDIDPLAVESARKNAEL-NQVSDRLQVKLIY 217 (288)
T ss_pred CHHHHHHHHHHHhh-cCCCCEEEEeCCCh-hHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHH-cCCCcceEEEecc
Confidence 33444433333332 35779999999997 6666777752 345899999999999999999987 7888888888887
Q ss_pred ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.... ..++||+|+...+ .....+++.++.+.|||||.+++-.
T Consensus 218 ~~~~--~~~~fDlVvan~~----~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 218 LEQP--IEGKADVIVANIL----AEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred cccc--cCCCceEEEEecC----HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4432 2348999986543 2455689999999999999998854
No 88
>PRK04266 fibrillarin; Provisional
Probab=99.18 E-value=3.2e-10 Score=104.37 Aligned_cols=103 Identities=12% Similarity=0.185 Sum_probs=77.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cC-CCCcc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SA-LKDYE 195 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~-l~~fD 195 (318)
..++.+|||+|||+ |..++.+|+.. ++.+|+++|+++++++...+.++. . .++.++.+|+.+.. .. ...||
T Consensus 70 i~~g~~VlD~G~G~-G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~---~-~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAAS-GTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEE---R-KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCC-CHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhh---c-CCcEEEECCCCCcchhhhccccCC
Confidence 46888999999997 45556788754 467999999999999988777665 1 57899999987521 11 23699
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
+||.+.- +......+++++++.|||||.+++.
T Consensus 144 ~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 9996531 2223355789999999999999883
No 89
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=2.8e-10 Score=109.10 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=84.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
+.+|||+|||+ |.-++.+|+. .|+++|+++|+|+++++.|+++++. .|+.++++|+++|+.+.. ..++||+|+..-
T Consensus 134 ~~~VLDlG~Gs-G~iai~la~~-~p~~~V~avDis~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~l-~~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGS-GCIAIACAYA-FPDAEVDAVDISPDALAVAEINIER-HGLEDRVTLIESDLFAAL-PGRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechh-hHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHH-hCCCCcEEEEECchhhhC-CCCCccEEEECC
Confidence 37999999996 5666778875 4899999999999999999999998 788889999999987532 224799998631
Q ss_pred ----------------------ccCCC--hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 202 ----------------------LVGMD--KDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 202 ----------------------lvgm~--~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
+.+-. .....++++++.+.|+|||.+++..++
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 00000 133568899999999999999986643
No 90
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=1.8e-10 Score=115.15 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=87.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVV 197 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V 197 (318)
+.++.+|||+||||+|.|. .+|+...++++|+++|+++.+++.+++++++ .|+. +++++++|+.+++.. .+.||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~-~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r-~g~~-~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTT-AIAELMKDQGKILAVDISREKIQLVEKHAKR-LKLS-SIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHHH-HHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-cCCC-eEEEEECchhhhhhhhhccCCEE
Confidence 3678899999999987775 5665544578999999999999999999998 8884 599999999887522 3479999
Q ss_pred Eecccc---CC---Ch---------------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALV---GM---DK---------------DEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalv---gm---~~---------------~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++++-. |+ ++ ....++|.++++.|||||.+++-.
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 987643 22 11 123678999999999999998866
No 91
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=1.5e-10 Score=115.79 Aligned_cols=110 Identities=17% Similarity=0.099 Sum_probs=86.0
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----CCCCc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----ALKDY 194 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~l~~f 194 (318)
+.++.+|||+||||++.|. .+|+.....++|+++|+++.+++.+++++++ .|+. +++++++|+.+++. ..+.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r-~g~~-~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTT-HIAELMGDQGEIWAVDRSASRLKKLQENAQR-LGLK-SIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCCcCEEEEeCCCCchhHH-HHHHHhCCCceEEEEcCCHHHHHHHHHHHHH-cCCC-eEEEEeCChhhcccccccccccC
Confidence 3577999999999977775 5666543457999999999999999999998 8885 59999999998752 23479
Q ss_pred cEEEecccc---CC---Chh---------------HHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALV---GM---DKD---------------EKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalv---gm---~~~---------------~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|.|++++-. |. ..+ ...++++++++.|||||+|++-.
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999987532 11 001 13688999999999999998754
No 92
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.18 E-value=2.7e-10 Score=106.77 Aligned_cols=110 Identities=14% Similarity=0.198 Sum_probs=86.0
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
+.++.+|||+||||++.|. .+|+....+..|+++|+++.+++.+++.+++ .|+ .+++++.+|+.+++...+.||.|+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-~g~-~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTT-QISALMKNEGAIVANEFSKSRTKVLIANINR-CGV-LNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred CCCcCEEEEECCCchHHHH-HHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-cCC-CcEEEecCCHHHhhhhccCCCEEE
Confidence 3677899999999987775 4565543456999999999999999999998 787 469999999988765555799999
Q ss_pred ecccc---CC---Ch---------------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALV---GM---DK---------------DEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalv---gm---~~---------------~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+++-. |+ +. ....++|++..+.|||||+|++-.
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 87532 11 00 122469999999999999998654
No 93
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.17 E-value=3.7e-10 Score=103.20 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=82.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+.+|||+|||+ |..++.+++. .++..|+|+|+|+.+++.|++.+.. .|+. +++++++|+.+. ...++||+|+.
T Consensus 86 ~~~~~ilDig~G~-G~~~~~l~~~-~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~-~~~~~~~d~~~~-~~~~~fD~Vi~ 160 (251)
T TIGR03534 86 KGPLRVLDLGTGS-GAIALALAKE-RPDARVTAVDISPEALAVARKNAAR-LGLD-NVTFLQSDWFEP-LPGGKFDLIVS 160 (251)
T ss_pred cCCCeEEEEeCcH-hHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-cCCC-eEEEEECchhcc-CcCCceeEEEE
Confidence 4567999999996 6666778875 4789999999999999999999987 6774 799999999873 33458999986
Q ss_pred ccc-c------CCChh------------------HHHHHHHHHHHhccCCeEEEEEcC
Q 021008 200 AAL-V------GMDKD------------------EKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 200 aal-v------gm~~~------------------~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
.-- + .+... ....+++++.+.|+|||.+++...
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 310 0 01111 124789999999999999988653
No 94
>PRK01581 speE spermidine synthase; Validated
Probab=99.17 E-value=2.2e-10 Score=111.94 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=83.9
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhh-----cCCCC-CCCeEEEEccccccCcC-C
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVS-----SDPDL-STRMFFHTTDIMNVSSA-L 191 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~-----~~~gl-~~ri~f~~gDa~~l~~~-l 191 (318)
...|+|||+||+| .|+++..+.+ |.+..+|+.||||+++++.|++... + .++ +.|++++.+|+.+.... .
T Consensus 148 h~~PkrVLIIGgG-dG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 148 VIDPKRVLILGGG-DGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHhcC
Confidence 3788999999999 5777766664 5456899999999999999997321 1 122 57999999999984333 3
Q ss_pred CCccEEEeccccCC----ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 192 KDYEVVFLAALVGM----DKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 192 ~~fD~V~~aalvgm----~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+.||+|+++..-+. ...-..++++.+++.|+|||++++...
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 48999999863221 112346799999999999999988764
No 95
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.17 E-value=2.7e-10 Score=103.69 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=82.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V~ 198 (318)
.++.+||+||||+ |..+..+++ .+++|+++|+++.+++.|++.+.. .+. +++|+.+|+.+.+. ..+.||+|+
T Consensus 47 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGG-GILSESMAR---LGADVTGIDASEENIEVARLHALE-SGL--KIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEcCCHHHHHHHHHHHHH-cCC--ceEEEecCHHHhhhhcCCCccEEE
Confidence 5678999999996 556667776 378999999999999999988876 343 68899999887652 235899998
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....+. ...+...+++.+.+.|+|||.+++..
T Consensus 120 ~~~~l~-~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLE-HVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhh-ccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 765443 22466789999999999999998865
No 96
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=2e-10 Score=114.97 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=84.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~ 198 (318)
.++.+|||+||||++.|. .+|+...++++|+++|+++.+++.+++++++ .|+.. ++++++|+.+++..+ +.||+|+
T Consensus 249 ~~g~~VLDlgaG~G~~t~-~la~~~~~~~~v~avDi~~~~l~~~~~n~~~-~g~~~-v~~~~~D~~~~~~~~~~~fD~Vl 325 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTT-HIAELLKNTGKVVALDIHEHKLKLIEENAKR-LGLTN-IETKALDARKVHEKFAEKFDKIL 325 (444)
T ss_pred CCCCEEEEeCCCCCHHHH-HHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCe-EEEEeCCcccccchhcccCCEEE
Confidence 567899999999876664 6666544678999999999999999999998 88854 999999998864333 4899999
Q ss_pred ecccc---CC-C----------hh-------HHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALV---GM-D----------KD-------EKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalv---gm-~----------~~-------~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+++-. |. . .. ...++++++.+.|||||.|++..
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 87521 11 0 00 12468999999999999998754
No 97
>PRK06202 hypothetical protein; Provisional
Probab=99.16 E-value=4.3e-10 Score=102.74 Aligned_cols=104 Identities=20% Similarity=0.147 Sum_probs=77.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHh---CCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAIN---HLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~---~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~ 196 (318)
.++.+|||||||++. .+..|++. ..++++|+|+|+|+++++.|++.... .++++.++++.+++...++||+
T Consensus 59 ~~~~~iLDlGcG~G~-~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGD-LAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----PGVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCH-HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----CCCeEEEEecccccccCCCccE
Confidence 567899999999754 44566642 23567999999999999999887554 3567888887777655568999
Q ss_pred EEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+... +.+++.++..++++++++.++ |.+++.+
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 99764 335555556789999999998 4444544
No 98
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.15 E-value=5.5e-10 Score=98.10 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=78.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++||++|||. |.-++.+++. +.+|+++|+|+++++.|++.++. .+. +++++.+|+.+.+ .++||+|+.
T Consensus 18 ~~~~~vLdlG~G~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-~~~--~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 18 LKPDDVLEIGAGT-GLVAIRLKGK---GKCILTTDINPFAVKELRENAKL-NNV--GLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred cCCCeEEEeCCCh-hHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHH-cCC--ceEEEEccccccc--CCcccEEEE
Confidence 5678999999996 5555677763 44999999999999999999886 444 6899999988754 248999986
Q ss_pred cccc-CCC-------------------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALV-GMD-------------------KDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalv-gm~-------------------~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.--. ..+ .....++++++.++|+|||.+++-.
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 5311 111 1124678999999999999987765
No 99
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.14 E-value=3.2e-10 Score=113.11 Aligned_cols=110 Identities=14% Similarity=0.116 Sum_probs=85.1
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~ 196 (318)
+.++.+|||+||||++.|. .+|+.. ++++|+++|+++++++.+++++++ .|+..++.+..+|+.+.+. ..+.||.
T Consensus 236 ~~~g~~VLDlcag~G~kt~-~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r-~g~~~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTT-HILELA-PQAQVVALDIHEHRLKRVYENLKR-LGLTIKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCCCeEEEeCCCccHHHH-HHHHHc-CCCeEEEEeCCHHHHHHHHHHHHH-cCCCeEEEEeccccccccccccccccCE
Confidence 3678999999999977775 566544 578999999999999999999998 7876556668888876543 3457999
Q ss_pred EEecccc---CC-C--hh---------------HHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALV---GM-D--KD---------------EKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalv---gm-~--~~---------------~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|++++-. |+ . .+ ...++|.+.++.|||||.|++-.
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9987532 21 0 01 13679999999999999999865
No 100
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.4e-10 Score=102.70 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=90.6
Q ss_pred hHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE
Q 021008 102 NYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT 181 (318)
Q Consensus 102 ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~ 181 (318)
.|..-..+...++....+.++.+||+|||| .|+.+.+||+- ..+|+.||++++-.+.|+++++. +|+.+ |.+++
T Consensus 53 qtis~P~~vA~m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l---~~~V~siEr~~~L~~~A~~~L~~-lg~~n-V~v~~ 126 (209)
T COG2518 53 QTISAPHMVARMLQLLELKPGDRVLEIGTG-SGYQAAVLARL---VGRVVSIERIEELAEQARRNLET-LGYEN-VTVRH 126 (209)
T ss_pred ceecCcHHHHHHHHHhCCCCCCeEEEECCC-chHHHHHHHHH---hCeEEEEEEcHHHHHHHHHHHHH-cCCCc-eEEEE
Confidence 333333344333333335899999999999 59999999983 44999999999999999999999 89855 99999
Q ss_pred ccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCccc
Q 021008 182 TDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARA 237 (318)
Q Consensus 182 gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~ 237 (318)
||+..=-...+.||.|++.+-+. +-...+ .+.|||||++++=-+++...
T Consensus 127 gDG~~G~~~~aPyD~I~Vtaaa~---~vP~~L----l~QL~~gGrlv~PvG~~~~q 175 (209)
T COG2518 127 GDGSKGWPEEAPYDRIIVTAAAP---EVPEAL----LDQLKPGGRLVIPVGSGPAQ 175 (209)
T ss_pred CCcccCCCCCCCcCEEEEeeccC---CCCHHH----HHhcccCCEEEEEEccCCcE
Confidence 99986333456899999877542 122223 57899999998876544433
No 101
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.14 E-value=7.3e-10 Score=109.15 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=81.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC--CCeEEEEccccccCcCCCCccEEEe
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS--TRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~--~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
+.+|||+|||. |.-++.+++++ |+++|+++|+|+.|++.|++.++. .+.. .+++|+.+|+.+-. ...+||+|+.
T Consensus 229 ~~~VLDLGCGt-Gvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~~~-~~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGN-GVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALSGV-EPFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccc-cHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEccccccC-CCCCEEEEEE
Confidence 46999999996 56667888764 899999999999999999999876 4432 48999999987532 2247999997
Q ss_pred cccc--C--CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALV--G--MDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalv--g--m~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.--. + ++.....+++.+..++|+|||.+.+-.
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4211 1 223455689999999999999887653
No 102
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.14 E-value=4.9e-10 Score=112.67 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=82.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc--cCcCCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN--VSSALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~--l~~~l~~fD~V 197 (318)
.++++|||||||+ |..+..++++ +.+|+|||+++++++.+++... ...+++|+++|+.+ ++...++||+|
T Consensus 36 ~~~~~vLDlGcG~-G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~----~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 36 YEGKSVLELGAGI-GRFTGELAKK---AGQVIALDFIESVIKKNESING----HYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred cCCCEEEEeCCCc-CHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc----cCCceEEEEecccccccCCCCCCEEEE
Confidence 4567999999996 6666778874 5699999999999998876432 34689999999963 44455689999
Q ss_pred Eecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+..... .++..+..++++++++.|||||.+++++
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 976433 4455567899999999999999999976
No 103
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=6.5e-10 Score=111.52 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=84.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++|||+||||++.| +.+|+....+++|+++|+|+.+++.+++.+++ .|+ .+++++++|+.+++ ....||.|++
T Consensus 249 ~~g~~VLDlgaG~G~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~-~g~-~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKS-TFMAELMQNRGQITAVDRYPQKLEKIRSHASA-LGI-TIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHH-HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-hCC-CeEEEEeCcccccc-cCCCCCEEEE
Confidence 56789999999987666 45666443467999999999999999999998 787 47999999998875 3347999998
Q ss_pred cccc---CC-----------Ch-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALV---GM-----------DK-------DEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalv---gm-----------~~-------~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++-. |+ +. ....+++.++++.|||||+|++..
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7532 11 00 123469999999999999999965
No 104
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.12 E-value=8.9e-10 Score=104.17 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=83.9
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec--
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA-- 200 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a-- 200 (318)
.+|||+|||. |.-++.+|+. .++++|+++|+|+++++.|+++++. .++.++++|+++|..+.. ...+||+|+..
T Consensus 116 ~~vLDlG~Gs-G~i~l~la~~-~~~~~v~avDis~~al~~a~~n~~~-~~~~~~v~~~~~d~~~~~-~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGS-GCIALALAYE-FPNAEVIAVDISPDALAVAEENAEK-NQLEHRVEFIQSNLFEPL-AGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccH-hHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECchhccC-cCCCccEEEECCC
Confidence 7999999996 6666788875 4789999999999999999999988 788778999999997632 22379998853
Q ss_pred --------------------cccCC-C-hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 201 --------------------ALVGM-D-KDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 201 --------------------alvgm-~-~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
|+.+- + .....++++++.+.|+|||.+++-.++
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 01100 0 125678999999999999999987653
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.12 E-value=8.1e-10 Score=110.28 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=83.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~ 196 (318)
+.++.+|||+||||++.|. .+++.. ++++|+++|+|+++++.+++.+++ .|+. ++++++|+.+++. ..++||.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~-~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~-~g~~--~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTA-HILELA-PQAQVVALDIDAQRLERVRENLQR-LGLK--ATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCCCEEEEeCCCCChHHH-HHHHHc-CCCEEEEEeCCHHHHHHHHHHHHH-cCCC--eEEEEcCcccchhhcccCCCCE
Confidence 3678999999999977775 566543 568999999999999999999988 6663 7899999987642 2347999
Q ss_pred EEecccc---CC-----------Ch-------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALV---GM-----------DK-------DEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalv---gm-----------~~-------~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|++++-. |. .. ....+++++..+.|||||.+++-.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9976632 10 11 123579999999999999998765
No 106
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.12 E-value=8.3e-10 Score=98.20 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=86.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE--
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF-- 198 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~-- 198 (318)
...||||+|||. |.-..-||+.-+ ....+|||.|++|+++|+.++++ -|.++.|+|.+.|+.+-.+..++||+|.
T Consensus 67 ~A~~VlDLGtGN-G~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~-~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227)
T KOG1271|consen 67 QADRVLDLGTGN-GHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAER-DGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227)
T ss_pred cccceeeccCCc-hHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHh-cCCCcceeEEEeeccCCcccccceeEEeec
Confidence 334999999995 777788887543 33489999999999999999998 8999999999999998666666999998
Q ss_pred --ecc--ccCCChhHH-HHHHHHHHHhccCCeEEEEEc
Q 021008 199 --LAA--LVGMDKDEK-IRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 --~aa--lvgm~~~~k-~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+| |.++....| .-++..+.+.|+|||++++.+
T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 444 334433333 457788899999999999987
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.12 E-value=1e-09 Score=83.42 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=80.5
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEEEeccc
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVVFLAAL 202 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V~~aal 202 (318)
+|+++|||.+ ..+..+++ .++.+++++|+++.+++.+++.... +...+++|+.+|..+... ..++||+|+....
T Consensus 1 ~ildig~G~G-~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTG-ALALALAS--GPGARVTGVDISPVALELARKAAAA--LLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCcc-HHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhc--ccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 5899999974 55556665 3688999999999999999864443 345789999999998754 4458999998775
Q ss_pred cCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 203 VGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
.....+...++++.+.+.++|||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 5321468899999999999999999874
No 108
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.11 E-value=5.2e-10 Score=104.13 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=85.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC--CccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK--DYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~--~fD~V 197 (318)
....||||+||| -|.-++.+|++. +.++|++||+++++.+.|++.++. .++.+||+++++|+.+...... +||+|
T Consensus 43 ~~~~~IlDlGaG-~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 43 PKKGRILDLGAG-NGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred ccCCeEEEecCC-cCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEE
Confidence 457999999999 578889999875 569999999999999999999998 8999999999999998755443 59998
Q ss_pred Eec-----ccc------------CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLA-----ALV------------GMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~a-----alv------------gm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.- .-. ++-...=..+++-..+.|||||.+.+-.
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 721 100 0001123567788899999999987644
No 109
>PRK14968 putative methyltransferase; Provisional
Probab=99.08 E-value=1.9e-09 Score=93.97 Aligned_cols=106 Identities=18% Similarity=0.281 Sum_probs=80.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCC-eEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTR-MFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~r-i~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.++++||++|||. |..++.++++ +++|+++|+|+++++.+++.+.. .++.++ +.++.+|..+... ...||+|+
T Consensus 22 ~~~~~vLd~G~G~-G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~~d~~~~~~-~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGS-GIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKL-NNIRNNGVEVIRSDLFEPFR-GDKFDVIL 95 (188)
T ss_pred cCCCEEEEEcccc-CHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHH-cCCCCcceEEEecccccccc-ccCceEEE
Confidence 5778999999995 6777788863 89999999999999999999887 666544 9999999877432 23799998
Q ss_pred eccccCC--------------------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGM--------------------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm--------------------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...-... ......++++++.+.|+|||.+++-.
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 5431100 01224568999999999999887643
No 110
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.08 E-value=1.3e-09 Score=105.15 Aligned_cols=108 Identities=10% Similarity=0.046 Sum_probs=85.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++|||+|||+++++ +-.+. .|+.|+|+|+|+.+++.|+++++. .|+.+ +.+.++|+.+++...+.||+|++
T Consensus 181 ~~g~~vLDp~cGtG~~l-ieaa~---~~~~v~g~Di~~~~~~~a~~nl~~-~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~ 254 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFL-IEAGL---MGAKVIGCDIDWKMVAGARINLEH-YGIED-FFVKRGDATKLPLSSESVDAIAT 254 (329)
T ss_pred CCcCEEEECCCCCCHHH-HHHHH---hCCeEEEEcCCHHHHHHHHHHHHH-hCCCC-CeEEecchhcCCcccCCCCEEEE
Confidence 67789999999976554 44443 489999999999999999999988 88866 99999999998766568999998
Q ss_pred ccccCC------C-h-hHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 200 AALVGM------D-K-DEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 200 aalvgm------~-~-~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
+.-.|. . . .-..+++++++++|+|||.+++-..+
T Consensus 255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 631111 1 1 23578999999999999998876643
No 111
>PLN02823 spermine synthase
Probab=99.07 E-value=1e-09 Score=106.54 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=83.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC---CCCCeEEEEccccccCcCC-CCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD---LSTRMFFHTTDIMNVSSAL-KDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g---l~~ri~f~~gDa~~l~~~l-~~fD 195 (318)
..|++||.||+| .|.++..+.+ |.+..+|+.||||+++++.|++.+.. .+ ...|++++.+|+.+..... ++||
T Consensus 102 ~~pk~VLiiGgG-~G~~~re~l~-~~~~~~v~~VEiD~~vv~lar~~~~~-~~~~~~dprv~v~~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 102 PNPKTVFIMGGG-EGSTAREVLR-HKTVEKVVMCDIDQEVVDFCRKHLTV-NREAFCDKRLELIINDARAELEKRDEKFD 178 (336)
T ss_pred CCCCEEEEECCC-chHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhccc-ccccccCCceEEEEChhHHHHhhCCCCcc
Confidence 578999999999 5666666664 44567899999999999999999864 21 2579999999999854333 4899
Q ss_pred EEEeccccCCCh--h---HHHHHHH-HHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDK--D---EKIRVID-HLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~--~---~k~~vl~-~l~r~LkpGg~lv~r~ 231 (318)
+|+++..-+... . -..++++ .+.++|+|||++++..
T Consensus 179 vIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 179 VIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 999986432110 1 1356887 8999999999998864
No 112
>PRK14967 putative methyltransferase; Provisional
Probab=99.07 E-value=2.4e-09 Score=97.48 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=77.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||+|||+ |.-++.+|+. ...+|+++|+|+.+++.|++++.. .++ +++++++|..+.. ..++||+|+.
T Consensus 35 ~~~~~vLDlGcG~-G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~-~~~--~~~~~~~d~~~~~-~~~~fD~Vi~ 107 (223)
T PRK14967 35 GPGRRVLDLCTGS-GALAVAAAAA--GAGSVTAVDISRRAVRSARLNALL-AGV--DVDVRRGDWARAV-EFRPFDVVVS 107 (223)
T ss_pred CCCCeEEEecCCH-HHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHH-hCC--eeEEEECchhhhc-cCCCeeEEEE
Confidence 5678999999997 6666778763 234999999999999999999887 454 5899999987742 3358999997
Q ss_pred cc-ccCCC-------------------hhHHHHHHHHHHHhccCCeEEEEE
Q 021008 200 AA-LVGMD-------------------KDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 200 aa-lvgm~-------------------~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
.. .+... ...-.++++++.+.|||||++++-
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 52 11100 011356888899999999999863
No 113
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.06 E-value=1.5e-09 Score=102.07 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=82.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC-C-CCCeEEEEccccccCcC-CCCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD-L-STRMFFHTTDIMNVSSA-LKDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g-l-~~ri~f~~gDa~~l~~~-l~~fD~ 196 (318)
..|++||+||||. |.++..+++ +.+..+|+++|+|+++++.|++.+....+ + ..+++++.+|+.+.... .+.||+
T Consensus 71 ~~p~~VL~iG~G~-G~~~~~ll~-~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGD-GGVLREVLK-HKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCc-hHHHHHHHh-CCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 5678999999996 445555554 33567899999999999999998765111 1 36899999999763222 348999
Q ss_pred EEeccccCC-ChhH--HHHHHHHHHHhccCCeEEEEEcC
Q 021008 197 VFLAALVGM-DKDE--KIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 197 V~~aalvgm-~~~~--k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|+++...+. +... ..++++.+++.|+|||++++...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 998875321 1112 46889999999999999998754
No 114
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.05 E-value=9.9e-10 Score=102.43 Aligned_cols=106 Identities=23% Similarity=0.271 Sum_probs=84.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CC-CCcc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--AL-KDYE 195 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l-~~fD 195 (318)
..+|+||++-|+|.+.+| ..||+...|..+|+.+|+.++..+.|++.++. .|+.+++++.+.|+.+--+ +. ..||
T Consensus 38 i~pG~~VlEaGtGSG~lt-~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLT-HALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp --TT-EEEEE--TTSHHH-HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred CCCCCEEEEecCCcHHHH-HHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCccc
Confidence 489999999999987777 46777667889999999999999999999999 9999999999999975323 22 4799
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhc-cCCeEEEEEcC
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYM-APGALLMLRSA 232 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~L-kpGg~lv~r~~ 232 (318)
.||++- ++...++.++.+.| +|||++++-++
T Consensus 116 avfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 116 AVFLDL------PDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp EEEEES------SSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred EEEEeC------CCHHHHHHHHHHHHhcCCceEEEECC
Confidence 999885 35567899999999 99999998773
No 115
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.04 E-value=1.6e-09 Score=110.48 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=83.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA 200 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a 200 (318)
++.+|||||||+ |.-++.+|++ .++++|+++|+|+++++.|++++.. .|+.++++|+.+|..+.. ....||+|+..
T Consensus 138 ~~~~VLDlG~Gs-G~iai~la~~-~p~~~v~avDis~~al~~A~~N~~~-~~l~~~v~~~~~D~~~~~-~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGS-GCIAISLLCE-LPNANVIATDISLDAIEVAKSNAIK-YEVTDRIQIIHSNWFENI-EKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCch-hHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHH-cCCccceeeeecchhhhC-cCCCccEEEEC
Confidence 457999999996 6666778866 4899999999999999999999987 788889999999987532 22479998851
Q ss_pred -----------------------cccCC-C-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 201 -----------------------ALVGM-D-KDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 201 -----------------------alvgm-~-~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+.+- + .....++++++.++|+|||.+++-.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 12211 0 1345678889999999999998854
No 116
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.03 E-value=2.1e-09 Score=97.54 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=81.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--------cCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--------SAL 191 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--------~~l 191 (318)
.++.+||||||||+.++ ..++++..++.+|++||+++- .. . .+++|+++|+.+.+ ...
T Consensus 50 ~~~~~VLDlG~GtG~~t-~~l~~~~~~~~~V~aVDi~~~---------~~---~-~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWS-QYAVTQIGDKGRVIACDILPM---------DP---I-VGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHH-HHHHHHcCCCceEEEEecccc---------cC---C-CCcEEEecCCCChHHHHHHHHHhCC
Confidence 67889999999987666 456665445679999999981 11 2 34899999999853 334
Q ss_pred CCccEEEecccc---CCChhH-------HHHHHHHHHHhccCCeEEEEEcCCCcc--cccccCCCccccC-CcEEEEEEc
Q 021008 192 KDYEVVFLAALV---GMDKDE-------KIRVIDHLAKYMAPGALLMLRSAHGAR--AFLYPVVDPSDLL-GFEVLSVFH 258 (318)
Q Consensus 192 ~~fD~V~~aalv---gm~~~~-------k~~vl~~l~r~LkpGg~lv~r~~~g~r--~~lYP~v~~~~l~-gf~~~~~~~ 258 (318)
+.||+|+.+... +.+..+ -..+++++.++|+|||.+++....+-+ .++ ..++ .|....+..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l------~~l~~~f~~v~~~K 189 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL------REIRSLFTKVKVRK 189 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH------HHHHhCceEEEEEC
Confidence 589999965311 111001 146899999999999999996533321 222 2233 677777776
Q ss_pred Cch
Q 021008 259 PTD 261 (318)
Q Consensus 259 p~~ 261 (318)
|..
T Consensus 190 p~s 192 (209)
T PRK11188 190 PDS 192 (209)
T ss_pred Ccc
Confidence 643
No 117
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.03 E-value=2e-09 Score=96.92 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=82.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~ 198 (318)
..+.+||++|||+ |..+..+++ .+..++++|+++.+++.+++.... .+. .+++|.++|+.+.+... +.||+|+
T Consensus 44 ~~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~-~~~-~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGG-GLLSEPLAR---LGANVTGIDASEENIEVAKLHAKK-DPL-LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHH-cCC-CceEEEeCCHHHhhcCCCCCccEEE
Confidence 3578999999997 555566775 267899999999999999988776 443 26899999998876543 5899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....++ ...+...+++++.+.|+|||.+++..
T Consensus 118 ~~~~l~-~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLE-HVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHH-hCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 765443 22466789999999999999988765
No 118
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.03 E-value=3e-09 Score=101.03 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=86.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-CC-CCCeEEEEccccccCcCCC-CccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-DL-STRMFFHTTDIMNVSSALK-DYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-gl-~~ri~f~~gDa~~l~~~l~-~fD~ 196 (318)
+.|+|||.||.|.+ .|+..+. +|.+-.+++.||||++.+++||+.+.... +. ..|++++.+|+.+...... .||+
T Consensus 75 ~~pk~VLiiGgGdG-~tlRevl-kh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGDG-GTLREVL-KHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCcc-HHHHHHH-hcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 56689999999965 4444555 46678999999999999999999988622 22 4899999999998765555 6999
Q ss_pred EEeccccCC---ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVGM---DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvgm---~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|++++.-+- ..---..+++.+++.|+|+|+++...
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 999986431 00124789999999999999999994
No 119
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.02 E-value=3.8e-09 Score=102.81 Aligned_cols=105 Identities=14% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
....+|||+|||. |.-++.++++ .|+.+|+++|+|+.|++.|++.++. .++. .+++.+|+.+. ..+.||+|+.
T Consensus 195 ~~~g~VLDlGCG~-G~ls~~la~~-~p~~~v~~vDis~~Al~~A~~nl~~-n~l~--~~~~~~D~~~~--~~~~fDlIvs 267 (342)
T PRK09489 195 HTKGKVLDVGCGA-GVLSAVLARH-SPKIRLTLSDVSAAALESSRATLAA-NGLE--GEVFASNVFSD--IKGRFDMIIS 267 (342)
T ss_pred cCCCeEEEeccCc-CHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cCCC--CEEEEcccccc--cCCCccEEEE
Confidence 3456899999996 5556677765 4788999999999999999999887 5553 57788888653 2348999996
Q ss_pred cccc--CC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALV--GM--DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalv--gm--~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.--. ++ +.....++++++.++|+|||.+.+-.
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 5322 11 23567899999999999999886643
No 120
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.01 E-value=3.9e-09 Score=104.66 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=81.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccCcC----CCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVSSA----LKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~~~----l~~f 194 (318)
.++++|||+|||+++++ +..+.. ...+|++||+|+.+++.|+++++. .|++ ++++|+++|+.+.... ...|
T Consensus 219 ~~g~rVLDlfsgtG~~~-l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~-Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNCFSYTGGFA-VSALMG--GCSQVVSVDTSQEALDIARQNVEL-NKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEeccCCCHHH-HHHHhC--CCCEEEEEECCHHHHHHHHHHHHH-cCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 46899999999987664 444431 234999999999999999999998 7886 5899999999885322 2379
Q ss_pred cEEEeccccC-CCh-------hHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 195 EVVFLAALVG-MDK-------DEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 195 D~V~~aalvg-m~~-------~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|+|+++---- -.+ ....+++....+.|+|||.|++-+-
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999874110 011 2345566677899999999998763
No 121
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.01 E-value=1.8e-09 Score=100.56 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=81.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccccCc-CCC-Ccc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMNVSS-ALK-DYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~l~~-~l~-~fD 195 (318)
+.|++||.||.|. |.++..+. +|.+-.+|+.|||||++++.|++.+....+ -+.|++++.+|+..... ..+ .||
T Consensus 75 ~~p~~VLiiGgG~-G~~~~ell-~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGD-GGTARELL-KHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTT-SHHHHHHT-TSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCC-hhhhhhhh-hcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence 6799999999995 55555565 454467999999999999999999875111 25799999999987433 333 699
Q ss_pred EEEeccccCCChh---HHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKD---EKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~---~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+++..-+.... -..++++.+.++|+|||++++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9999876522112 24689999999999999999986
No 122
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=8.7e-10 Score=99.76 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=92.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeE-EEEccccccC-cCCCCccEEE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMF-FHTTDIMNVS-SALKDYEVVF 198 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~-f~~gDa~~l~-~~l~~fD~V~ 198 (318)
..-.||+||||+++- +-+-. .-|+.+||++|.++.+-+.|.+-+++ . ...++. |+.|++.+++ -.+++||.|+
T Consensus 76 ~K~~vLEvgcGtG~N--fkfy~-~~p~~svt~lDpn~~mee~~~ks~~E-~-k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGAN--FKFYP-WKPINSVTCLDPNEKMEEIADKSAAE-K-KPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCC--ccccc-CCCCceEEEeCCcHHHHHHHHHHHhh-c-cCcceEEEEeechhcCcccccCCeeeEE
Confidence 334679999997532 21111 12799999999999999999998887 3 445666 9999999997 2445999877
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc-CCCccc----ccccCCCcc-ccCCcEEEEEEcCchhHH
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS-AHGARA----FLYPVVDPS-DLLGFEVLSVFHPTDEVI 264 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~-~~g~r~----~lYP~v~~~-~l~gf~~~~~~~p~~~Vv 264 (318)
-. ++-...++..+.|+++.|+|||||++++-+ ..|-.. ++--+.+|. .+.+| -+.|.+.++++.
T Consensus 151 ~T-lvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~d-GC~ltrd~~e~L 220 (252)
T KOG4300|consen 151 CT-LVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESD-GCVLTRDTGELL 220 (252)
T ss_pred EE-EEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheecc-ceEEehhHHHHh
Confidence 43 232245788999999999999999998866 222222 221222331 12234 356677666654
No 123
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.00 E-value=6.5e-09 Score=100.19 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=75.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC----CCCeEEEEccccccCcCCCCccE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL----STRMFFHTTDIMNVSSALKDYEV 196 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl----~~ri~f~~gDa~~l~~~l~~fD~ 196 (318)
++.+|||||||+ |..++.+++ .|.+|+|+|+|+.+++.|++..+. .+. ..+++|.++|..++ .+.||+
T Consensus 144 ~~~~VLDlGcGt-G~~a~~la~---~g~~V~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~~~f~~~Dl~~l---~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGT-GSLAIPLAL---EGAIVSASDISAAMVAEAERRAKE-ALAALPPEVLPKFEANDLESL---SGKYDT 215 (315)
T ss_pred CCCEEEEecCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHh-cccccccccceEEEEcchhhc---CCCcCE
Confidence 578999999996 666678886 388999999999999999998876 322 35789999997664 258998
Q ss_pred EEec-cccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 197 VFLA-ALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 197 V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
|+.. .+.+++.+...++++.+.+ +.+|+.++.-
T Consensus 216 Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~ 249 (315)
T PLN02585 216 VTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISF 249 (315)
T ss_pred EEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEe
Confidence 8854 3445554445567777775 5677766543
No 124
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.00 E-value=2e-09 Score=95.33 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=70.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--------cCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--------SAL 191 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--------~~l 191 (318)
.++.+|||||||+++++.. +++++.++++|+++|+++.+ .. .+++++++|+.+.. ...
T Consensus 31 ~~g~~VLDiG~GtG~~~~~-l~~~~~~~~~v~~vDis~~~--------~~-----~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQV-AVEQVGGKGRVIAVDLQPMK--------PI-----ENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred CCCCEEEEecCCCCHHHHH-HHHHhCCCceEEEEeccccc--------cC-----CCceEEEeeCCChhHHHHHHHHhCC
Confidence 7889999999999887764 45454456799999999964 11 45789999987632 223
Q ss_pred CCccEEEeccc---cCC---C----hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 192 KDYEVVFLAAL---VGM---D----KDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aal---vgm---~----~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++||+|+.+.. .|. + .+...+++..+++.|+|||++++-.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 47999997531 111 1 1234689999999999999998853
No 125
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=5.5e-09 Score=97.10 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=81.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||+|||+ |.-++.+++. .++++|+|+|+|+.+++.|++.+.. +...+++|+.+|..+.. ..++||+|+.
T Consensus 107 ~~~~~vLDiG~Gs-G~~~~~la~~-~~~~~v~~iDis~~~l~~a~~n~~~--~~~~~i~~~~~d~~~~~-~~~~fD~Iv~ 181 (275)
T PRK09328 107 KEPLRVLDLGTGS-GAIALALAKE-RPDAEVTAVDISPEALAVARRNAKH--GLGARVEFLQGDWFEPL-PGGRFDLIVS 181 (275)
T ss_pred cCCCEEEEEcCcH-HHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHh--CCCCcEEEEEccccCcC-CCCceeEEEE
Confidence 5678999999996 6666788875 4789999999999999999999872 34578999999997632 2358999985
Q ss_pred cc-cc------CCC------------------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AA-LV------GMD------------------KDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aa-lv------gm~------------------~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.- .+ .++ .....++++++.+.|+|||.+++..
T Consensus 182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 31 00 001 1234678899999999999999854
No 126
>PRK03612 spermidine synthase; Provisional
Probab=98.98 E-value=2.3e-09 Score=109.64 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=81.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHH--hhcC--CCC-CCCeEEEEccccccCc-CCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSL--VSSD--PDL-STRMFFHTTDIMNVSS-ALK 192 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~--~~~~--~gl-~~ri~f~~gDa~~l~~-~l~ 192 (318)
++++|||+||+|. |.++..+++ | ++ .+|+.||+|+++++.|++. +... ..+ +.|++++.+|+.+... ..+
T Consensus 296 ~~~~rVL~IG~G~-G~~~~~ll~-~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGD-GLALREVLK-Y-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE 372 (521)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh-C-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence 6789999999995 666666665 4 55 8999999999999999984 2220 112 3689999999987432 234
Q ss_pred CccEEEeccccCCCh----hHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 193 DYEVVFLAALVGMDK----DEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 193 ~fD~V~~aalvgm~~----~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+||+|+++....... --..++++.+.++|||||++++...
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 899999885322111 1134689999999999999998764
No 127
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.97 E-value=4.1e-09 Score=100.68 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=84.1
Q ss_pred HHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE
Q 021008 103 YIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT 181 (318)
Q Consensus 103 y~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~ 181 (318)
.+.-+++-.+.+.+. ..++++|||||||. |.-++..++ .|+ +|+++|+||.+++.|+++++. -|+++++.+.
T Consensus 144 ~H~TT~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k---lGA~~v~a~DiDp~Av~~a~~N~~~-N~~~~~~~v~- 216 (295)
T PF06325_consen 144 HHPTTRLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK---LGAKKVVAIDIDPLAVEAARENAEL-NGVEDRIEVS- 216 (295)
T ss_dssp HCHHHHHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH---TTBSEEEEEESSCHHHHHHHHHHHH-TT-TTCEEES-
T ss_pred CCHHHHHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH---cCCCeEEEecCCHHHHHHHHHHHHH-cCCCeeEEEE-
Confidence 344666766666655 37789999999995 888887665 366 799999999999999999998 8898888764
Q ss_pred ccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 182 TDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 182 gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
...+.+. ..||+|+.--+ ...=..++..+.++|+|||.+++.
T Consensus 217 -~~~~~~~--~~~dlvvANI~----~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 217 -LSEDLVE--GKFDLVVANIL----ADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp -CTSCTCC--S-EEEEEEES-----HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred -Eeccccc--ccCCEEEECCC----HHHHHHHHHHHHHhhCCCCEEEEc
Confidence 2233332 58999984432 245567888899999999999984
No 128
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.96 E-value=3.1e-09 Score=112.33 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=83.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccCcCC-CCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVSSAL-KDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~~~l-~~fD~ 196 (318)
.++++||++|||.+++ ++.+|+. |+ +|++||+|+.++++|+++++. .|+. .+++|+++|+.+..... ..||+
T Consensus 537 ~~g~rVLDlf~gtG~~-sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~-ng~~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTA-SVHAALG---GAKSTTTVDMSNTYLEWAERNFAL-NGLSGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHH-HHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHH-hCCCccceEEEEccHHHHHHHcCCCcCE
Confidence 4689999999997554 5677763 55 699999999999999999987 7786 68999999998753222 38999
Q ss_pred EEecc--ccC---C-----ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAA--LVG---M-----DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aa--lvg---m-----~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+++- +.. + ......+++..+.++|+|||.+++-+
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 99863 110 0 12355778999999999999998765
No 129
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.96 E-value=7.4e-09 Score=102.97 Aligned_cols=108 Identities=14% Similarity=0.205 Sum_probs=79.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~~fD~V~ 198 (318)
.++.+|||||||+ |.-++.+|++ .++++|+++|+|+++++.|+++++. .+ .+++|+++|..+... ..++||+|+
T Consensus 250 ~~~~rVLDLGcGS-G~IaiaLA~~-~p~a~VtAVDiS~~ALe~AreNa~~-~g--~rV~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 250 PENGRVWDLGTGS-GAVAVTVALE-RPDAFVRASDISPPALETARKNAAD-LG--ARVEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCCCEEEEEeChh-hHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cC--CcEEEEEcchhccccccCCCccEEE
Confidence 4557999999996 5555777765 3899999999999999999999987 44 489999999875322 224799998
Q ss_pred ecc----------------------ccCCC--hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 199 LAA----------------------LVGMD--KDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 199 ~aa----------------------lvgm~--~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
..- +.+.. .+...++++++.++|+|||.+++-.+
T Consensus 325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 521 11100 12345788888899999999887553
No 130
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.96 E-value=2.1e-09 Score=93.42 Aligned_cols=80 Identities=10% Similarity=0.150 Sum_probs=64.8
Q ss_pred EEEeCChHHHHHHHHHhhc-CCCCCCCeEEEEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 151 DNYDIDPSANSKALSLVSS-DPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 151 ~gvDid~~ai~~Ar~~~~~-~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+|+|+|+++++.|++..+. ..+...+++|+++|+.++|...+.||+|+....+. ...++.+++++++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR-NVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhh-cCCCHHHHHHHHHHHcCcCeEEEE
Confidence 5899999999999876553 12334689999999999998777999998654332 236889999999999999999987
Q ss_pred Ec
Q 021008 230 RS 231 (318)
Q Consensus 230 r~ 231 (318)
-+
T Consensus 80 ~d 81 (160)
T PLN02232 80 LD 81 (160)
T ss_pred EE
Confidence 76
No 131
>PTZ00146 fibrillarin; Provisional
Probab=98.95 E-value=9.4e-09 Score=97.92 Aligned_cols=146 Identities=10% Similarity=0.086 Sum_probs=91.9
Q ss_pred HHHHHHHhhcCCCCcc-cccCCcChhhHH-HhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEe
Q 021008 77 ESHFSSILASFENPIA-NLNIFPYYSNYI-KLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYD 154 (318)
Q Consensus 77 E~~~A~~l~~~~~P~~-~L~~fpY~~ny~-~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvD 154 (318)
|..|.+++.+.+++-. .=.-+.-|+.|. +|...-+..+......++.+|||+|||| |.++..+|+...+..+|++||
T Consensus 86 ~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD 164 (293)
T PTZ00146 86 ESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVE 164 (293)
T ss_pred cccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEE
Confidence 4556666655432211 001244454443 3333333333333247889999999997 566677887654457899999
Q ss_pred CChHHHHHHHHHhhcCCCCCCCeEEEEcccccc---CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 155 IDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV---SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 155 id~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l---~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
+++.+.+...+.+.. ..+|.++.+|+.+. ......||+||.+.. +..+...++.++.+.|||||.|++.
T Consensus 165 ~s~r~~~dLl~~ak~----r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 165 FSHRSGRDLTNMAKK----RPNIVPIIEDARYPQKYRMLVPMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CcHHHHHHHHHHhhh----cCCCEEEECCccChhhhhcccCCCCEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 998766544444433 15789999998642 112347999998763 2334455667899999999999983
No 132
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.92 E-value=1.2e-08 Score=95.07 Aligned_cols=130 Identities=19% Similarity=0.176 Sum_probs=86.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-CcCC-CCccEEE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-SSAL-KDYEVVF 198 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-~~~l-~~fD~V~ 198 (318)
.+.+|||+|||. |.-++.+++. .++.+|+++|+|+++++.|+++++. .+ ++|+++|+.+. +... +.||+|+
T Consensus 86 ~~~~vLDlg~Gs-G~i~l~la~~-~~~~~v~~vDis~~al~~A~~N~~~-~~----~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGS-GAVGAALAAA-LDGIELHAADIDPAAVRCARRNLAD-AG----GTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCch-HHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH-cC----CEEEEeechhhcchhcCCCEeEEE
Confidence 356999999996 5555677765 4788999999999999999999886 33 48999998763 2212 3799998
Q ss_pred eccc-c------CCCh------------------hHHHHHHHHHHHhccCCeEEEEEcCCCccc-ccccCCCccccCCcE
Q 021008 199 LAAL-V------GMDK------------------DEKIRVIDHLAKYMAPGALLMLRSAHGARA-FLYPVVDPSDLLGFE 252 (318)
Q Consensus 199 ~aal-v------gm~~------------------~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~-~lYP~v~~~~l~gf~ 252 (318)
..-- + .++. +-..++++...++|+|||.+++-....-.. .. ..-.-.||+
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~----~~l~~~g~~ 234 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAV----EAFARAGLI 234 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHH----HHHHHCCCC
Confidence 6531 1 0111 113478888889999999998865322111 11 000112777
Q ss_pred EEEEEcCch
Q 021008 253 VLSVFHPTD 261 (318)
Q Consensus 253 ~~~~~~p~~ 261 (318)
.....|++-
T Consensus 235 ~~~~~~~~~ 243 (251)
T TIGR03704 235 ARVASSEEL 243 (251)
T ss_pred ceeeEcccc
Confidence 766666644
No 133
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.92 E-value=9.5e-09 Score=94.26 Aligned_cols=98 Identities=18% Similarity=0.292 Sum_probs=79.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.+.++|+|||+|. |.-++.++++| |+.+++.+|. |++++.+++ .+||+|+.||..+ +...+|++++
T Consensus 99 ~~~~~vvDvGGG~-G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~---~~P~~D~~~l 164 (241)
T PF00891_consen 99 SGFKTVVDVGGGS-GHFAIALARAY-PNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD---PLPVADVYLL 164 (241)
T ss_dssp TTSSEEEEET-TT-SHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT---CCSSESEEEE
T ss_pred cCccEEEeccCcc-hHHHHHHHHHC-CCCcceeecc-Hhhhhcccc--------ccccccccccHHh---hhccccceee
Confidence 6678999999996 55556777776 9999999999 999999988 4899999999983 2224999999
Q ss_pred cccc-CCChhHHHHHHHHHHHhccCC--eEEEEEc
Q 021008 200 AALV-GMDKDEKIRVIDHLAKYMAPG--ALLMLRS 231 (318)
Q Consensus 200 aalv-gm~~~~k~~vl~~l~r~LkpG--g~lv~r~ 231 (318)
...+ .++.++-.++|+++++.|+|| |+|++-+
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 8866 457788899999999999999 9998876
No 134
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.1e-08 Score=97.72 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=85.5
Q ss_pred HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc
Q 021008 104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT 182 (318)
Q Consensus 104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g 182 (318)
+.-+.+-.+.+.+.. .++++|||+|||. |.-+|..++ .|+ +|+|+|+||-|++.|+.+++. -+....++.-..
T Consensus 146 HpTT~lcL~~Le~~~-~~g~~vlDvGcGS-GILaIAa~k---LGA~~v~g~DiDp~AV~aa~eNa~~-N~v~~~~~~~~~ 219 (300)
T COG2264 146 HPTTSLCLEALEKLL-KKGKTVLDVGCGS-GILAIAAAK---LGAKKVVGVDIDPQAVEAARENARL-NGVELLVQAKGF 219 (300)
T ss_pred ChhHHHHHHHHHHhh-cCCCEEEEecCCh-hHHHHHHHH---cCCceEEEecCCHHHHHHHHHHHHH-cCCchhhhcccc
Confidence 335556666665543 6899999999995 888887776 366 499999999999999999997 566543334444
Q ss_pred cccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 183 DIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 183 Da~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+..+.+. .+.||+|+.--| +..=.++..++.+.+||||.+++-.
T Consensus 220 ~~~~~~~-~~~~DvIVANIL----A~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 220 LLLEVPE-NGPFDVIVANIL----AEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cchhhcc-cCcccEEEehhh----HHHHHHHHHHHHHHcCCCceEEEEe
Confidence 4444332 248999985443 2455688999999999999998854
No 135
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.85 E-value=2.2e-08 Score=96.05 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=73.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V~ 198 (318)
.++.+|||+|||. |.-++.+|+ .+.+|+|+|+|+++++.|++.++. .|+ .+++|+++|+.++... .+.||+|+
T Consensus 172 ~~~~~VLDl~cG~-G~~sl~la~---~~~~V~gvD~s~~av~~A~~n~~~-~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 172 LPPRSMWDLFCGV-GGFGLHCAT---PGMQLTGIEISAEAIACAKQSAAE-LGL-TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred cCCCEEEEccCCC-CHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHH-cCC-CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 3578999999996 555678887 478999999999999999999988 777 6899999999876432 24799999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
++--- ..-...+++.+ ..++|++++.+
T Consensus 246 ~dPPr---~G~~~~~~~~l-~~~~~~~ivyv 272 (315)
T PRK03522 246 VNPPR---RGIGKELCDYL-SQMAPRFILYS 272 (315)
T ss_pred ECCCC---CCccHHHHHHH-HHcCCCeEEEE
Confidence 87411 01122344444 34677665544
No 136
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.4e-08 Score=93.73 Aligned_cols=105 Identities=23% Similarity=0.325 Sum_probs=81.9
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe----
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL---- 199 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~---- 199 (318)
+|+|||||. |.=++.+|++ .+.++|+++|||++|++.|++++.. .|+ .++.++.+|..+-.. ++||+|+.
T Consensus 113 ~ilDlGTGS-G~iai~la~~-~~~~~V~a~Dis~~Al~~A~~Na~~-~~l-~~~~~~~~dlf~~~~--~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGS-GAIAIALAKE-GPDAEVIAVDISPDALALARENAER-NGL-VRVLVVQSDLFEPLR--GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCCh-HHHHHHHHhh-CcCCeEEEEECCHHHHHHHHHHHHH-cCC-ccEEEEeeecccccC--CceeEEEeCCCC
Confidence 899999996 6777888875 4889999999999999999999998 888 778888887765322 27887651
Q ss_pred -c-----------------cccCC-C-hhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 200 -A-----------------ALVGM-D-KDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 200 -a-----------------alvgm-~-~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
. ++++- + .+-..+++.++.+.|+|||.+++..+.+
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~ 241 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT 241 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence 1 22211 1 2467789999999999999999988643
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=4.1e-08 Score=85.65 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=72.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|||||||++.+| ..++++ +.+|+++|+|+.+++.+++.+.. ..+++++.+|+.+++.....||.|+.
T Consensus 12 ~~~~~vLEiG~G~G~lt-~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~~~~d~vi~ 83 (169)
T smart00650 12 RPGDTVLEIGPGKGALT-EELLER---AARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPKLQPYKVVG 83 (169)
T ss_pred CCcCEEEEECCCccHHH-HHHHhc---CCeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccccCCCEEEE
Confidence 56789999999975555 556653 78999999999999999988764 25899999999998655446998885
Q ss_pred ccccCCChhHHHHHHHHHHHh--ccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKY--MAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~--LkpGg~lv~r~ 231 (318)
.-.... ..+++..+.+. +.+||.+++-.
T Consensus 84 n~Py~~----~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 84 NLPYNI----STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CCCccc----HHHHHHHHHhcCCCcceEEEEEEH
Confidence 532221 23445444443 34788888855
No 138
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.79 E-value=6.1e-08 Score=92.52 Aligned_cols=125 Identities=15% Similarity=0.213 Sum_probs=89.3
Q ss_pred HHHHhhcc-cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC
Q 021008 111 FNILTQHC-SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS 188 (318)
Q Consensus 111 ~~~l~~~~-~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~ 188 (318)
++++..+. .-.+++|||||||. |+=++.|+++ |+ .|+|||.++-.....+-+-.- .|...++.+.---+.+++
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~n-GY~~frM~~~---GA~~ViGiDP~~lf~~QF~~i~~~-lg~~~~~~~lplgvE~Lp 178 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNN-GYYSFRMLGR---GAKSVIGIDPSPLFYLQFEAIKHF-LGQDPPVFELPLGVEDLP 178 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCC-cHHHHHHhhc---CCCEEEEECCChHHHHHHHHHHHH-hCCCccEEEcCcchhhcc
Confidence 44444444 36889999999995 7777888763 66 699999999888776544443 444444444434566787
Q ss_pred cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC--CCcc-cccccC
Q 021008 189 SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA--HGAR-AFLYPV 242 (318)
Q Consensus 189 ~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~--~g~r-~~lYP~ 242 (318)
. .+.||+||....+ .+..+....|.++...|+|||.|++.+. .|-. ..++|.
T Consensus 179 ~-~~~FDtVF~MGVL-YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~ 233 (315)
T PF08003_consen 179 N-LGAFDTVFSMGVL-YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE 233 (315)
T ss_pred c-cCCcCEEEEeeeh-hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC
Confidence 6 7799999987744 2346788999999999999999998761 2322 366664
No 139
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.77 E-value=5.2e-08 Score=88.15 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=76.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V~ 198 (318)
..+.+|||+|||.+.++...+++ ..++|++||+|+++++.++++++. .|+ .+++|+++|+.+.... ...||+|+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~-~~~-~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLAT-LKA-GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHH-hCC-CcEEEEEchHHHHHhhcCCCceEEE
Confidence 45689999999975555434554 247999999999999999999988 676 4799999999874322 23699999
Q ss_pred eccccCCChhHHHHHHHHHHHh--ccCCeEEEEEcC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKY--MAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~--LkpGg~lv~r~~ 232 (318)
++--- ...-..++++.+... ++|++.+++...
T Consensus 127 ~DPPy--~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPF--RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCC--CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 87521 123345566666553 789998888754
No 140
>PRK00536 speE spermidine synthase; Provisional
Probab=98.77 E-value=7.1e-08 Score=90.76 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=77.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC-CC-CCCeEEEEccccccCcCCCCccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP-DL-STRMFFHTTDIMNVSSALKDYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-gl-~~ri~f~~gDa~~l~~~l~~fD~ 196 (318)
.+.|+|||.||.|- |.++.-+.| | +. +|+-||||+++++.|++.+.... ++ ..|++++.. ..+. ..+.||+
T Consensus 70 h~~pk~VLIiGGGD-Gg~~REvLk-h-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~--~~~~fDV 142 (262)
T PRK00536 70 KKELKEVLIVDGFD-LELAHQLFK-Y-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL--DIKKYDL 142 (262)
T ss_pred CCCCCeEEEEcCCc-hHHHHHHHC-c-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc--cCCcCCE
Confidence 37899999999996 555555554 5 44 99999999999999999765411 22 468888762 2221 1248999
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
|+++++. ...+++.+.+.|+|||++++-+...
T Consensus 143 IIvDs~~------~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 143 IICLQEP------DIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred EEEcCCC------ChHHHHHHHHhcCCCcEEEECCCCc
Confidence 9999853 2578899999999999999987644
No 141
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=9.6e-08 Score=91.04 Aligned_cols=104 Identities=14% Similarity=0.227 Sum_probs=77.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
....+|||+|||. |.-++.+|+. .|.+++|-+|+|..|++.||+.++. -++... .+..+|..+-..+ +||.|+.
T Consensus 157 ~~~~~vlDlGCG~-Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~-N~~~~~-~v~~s~~~~~v~~--kfd~Iis 230 (300)
T COG2813 157 DLGGKVLDLGCGY-GVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAA-NGVENT-EVWASNLYEPVEG--KFDLIIS 230 (300)
T ss_pred cCCCcEEEeCCCc-cHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHH-cCCCcc-EEEEecccccccc--cccEEEe
Confidence 3445999999995 5555788876 4899999999999999999999987 555443 6777888764433 8999984
Q ss_pred cccc--CCC--hhHHHHHHHHHHHhccCCeEEEE
Q 021008 200 AALV--GMD--KDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 200 aalv--gm~--~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
-=-. |.. ..--.+++++..++|++||.|-+
T Consensus 231 NPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 231 NPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred CCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 3211 211 12234899999999999997644
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.77 E-value=4.5e-08 Score=88.12 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=81.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCccEEEe
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYEVVFL 199 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD~V~~ 199 (318)
.-+++|||| .|--.+.+|+++ |+..++|||+....+..|.+.+.+ .++ .++.++++|+..+. .+.++.|-|++
T Consensus 19 ~l~lEIG~G-~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~-~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCG-KGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK-RGL-KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEEET-T-TSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH-HTT-SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CeEEEecCC-CCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh-hcc-cceEEEEccHHHHHhhcccCCchheEEE
Confidence 389999999 577778899886 999999999999999999888887 677 89999999998732 23458999987
Q ss_pred ccccCCChhH-------HHHHHHHHHHhccCCeEEEEEcCC
Q 021008 200 AALVGMDKDE-------KIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 200 aalvgm~~~~-------k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
.---++++.. ...+++.+++.|+|||.|.+.+.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 7644554311 246899999999999999998854
No 143
>PLN02672 methionine S-methyltransferase
Probab=98.76 E-value=5.7e-08 Score=106.20 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=82.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC---------------CCCCeEEEEccccc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD---------------LSTRMFFHTTDIMN 186 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g---------------l~~ri~f~~gDa~~ 186 (318)
+.+|||||||. |.-++.+|+++ +.++|+++|||++|++.|+++++. .+ +.+|++|+++|..+
T Consensus 119 ~~~VLDlG~GS-G~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~ 195 (1082)
T PLN02672 119 DKTVAELGCGN-GWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLG 195 (1082)
T ss_pred CCEEEEEecch-HHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhh
Confidence 57999999995 77778888764 778999999999999999999876 33 23689999999987
Q ss_pred cCcCCC-CccEEEec--------------------------------cccCC----C-hhHHHHHHHHHHHhccCCeEEE
Q 021008 187 VSSALK-DYEVVFLA--------------------------------ALVGM----D-KDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 187 l~~~l~-~fD~V~~a--------------------------------alvgm----~-~~~k~~vl~~l~r~LkpGg~lv 228 (318)
.....+ .||+|+.- ||.|. + ..-..+++++..++|+|||.++
T Consensus 196 ~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 196 YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 543322 69987611 11110 0 1234788899999999999999
Q ss_pred EEcCCC
Q 021008 229 LRSAHG 234 (318)
Q Consensus 229 ~r~~~g 234 (318)
+.-+..
T Consensus 276 lEiG~~ 281 (1082)
T PLN02672 276 FNMGGR 281 (1082)
T ss_pred EEECcc
Confidence 877543
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.76 E-value=9.1e-08 Score=95.99 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=74.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD 195 (318)
.++.+|||+|||++ .-++.+|+. +.+|+|+|+|+++++.|+++++. .|+ ++++|+++|+.+.. ...+.||
T Consensus 296 ~~~~~VLDlgcGtG-~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~-~~~-~~v~~~~~d~~~~l~~~~~~~~~fD 369 (443)
T PRK13168 296 QPGDRVLDLFCGLG-NFTLPLARQ---AAEVVGVEGVEAMVERARENARR-NGL-DNVTFYHANLEEDFTDQPWALGGFD 369 (443)
T ss_pred CCCCEEEEEeccCC-HHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHH-cCC-CceEEEEeChHHhhhhhhhhcCCCC
Confidence 56789999999975 555678874 57999999999999999999987 676 46999999997632 1224799
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
+|+++- +.....++++.+.+ ++|++.+.+-
T Consensus 370 ~Vi~dP----Pr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 370 KVLLDP----PRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred EEEECc----CCcChHHHHHHHHh-cCCCeEEEEE
Confidence 999874 21222356666655 7888776553
No 145
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.74 E-value=7.4e-08 Score=97.48 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=87.2
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVV 197 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V 197 (318)
+.++.+|||+++||+|-|+. +|........|+++|+++..++..++++++ .|+ .++.+...|+..+.... ..||.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~-la~~l~~~g~lvA~D~~~~R~~~L~~nl~r-~G~-~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQ-IAALMNNQGAIVANEYSASRVKVLHANISR-CGV-SNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCCEEEEeCCCccHHHHH-HHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-cCC-CeEEEEeCchhhhhhhchhhcCeE
Confidence 36889999999999988865 565543456999999999999999999999 888 55889999998764333 379999
Q ss_pred Eecccc---CC---ChhHH---------------HHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALV---GM---DKDEK---------------IRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalv---gm---~~~~k---------------~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++++-+ || +.+.+ .++|++.++.|||||+||+-.
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 998855 33 11111 678999999999999998865
No 146
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.71 E-value=8.1e-08 Score=85.48 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=67.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cC-cCCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VS-SALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~-~~l~~fD~V 197 (318)
.++++|||||||.+.+ +..+++. .++.++|+|+++++++.|++ .+++++.+|+.+ ++ ...++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~-~~~l~~~--~~~~~~giD~s~~~i~~a~~---------~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGEL-LALLRDE--KQVRGYGIEIDQDGVLACVA---------RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHH-HHHHHhc--cCCcEEEEeCCHHHHHHHHH---------cCCeEEEEEhhhcccccCCCCcCEE
Confidence 5678999999997544 5567654 47789999999999998853 236889999876 43 344589999
Q ss_pred EeccccCCChhHHHHHHHHHHHhccC
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAP 223 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~Lkp 223 (318)
+....++ ...+..++++++.+.+++
T Consensus 80 i~~~~l~-~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQ-ATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhH-cCcCHHHHHHHHHHhCCe
Confidence 9765332 235677889998887665
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.67 E-value=1.8e-07 Score=93.28 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=74.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----CCCCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----ALKDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~l~~fD 195 (318)
.++.+|||+|||. |..++.+|+. ..+|+|+|+|+++++.|++++.. .|+ ++++|+.+|+.+... ....||
T Consensus 291 ~~~~~vLDl~cG~-G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~-~~~-~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEELVVDAYCGV-GTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAEL-NGI-ANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCCEEEEcCCCc-CHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHH-hCC-CceEEEeCCHHHHHHHHHhcCCCCC
Confidence 5668999999996 6666788873 56899999999999999999987 676 589999999976321 123699
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+|+++--- ..-...+++.+. .++|++.+.+
T Consensus 365 ~vi~dPPr---~G~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 365 VLLLDPPR---KGCAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred EEEECcCC---CCCCHHHHHHHH-hcCCCEEEEE
Confidence 99977511 111356777665 4889876554
No 148
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.65 E-value=1e-08 Score=82.31 Aligned_cols=101 Identities=18% Similarity=0.256 Sum_probs=48.6
Q ss_pred EEEccCCChHHHHHHHHhCCCCc--EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEEEecc
Q 021008 126 AFIGSGPLPLTSIVLAINHLTTT--CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVVFLAA 201 (318)
Q Consensus 126 L~IGsGplp~tai~LA~~~~~ga--~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V~~aa 201 (318)
++||+. .|.|++++++...++. ++++||..+. .+.+++.+++ .++..+++++.+|..+....+ ..||++|+++
T Consensus 1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp ---------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred Cccccc-cccccccccccccccccCCEEEEECCCc-ccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 589987 6889988887543443 7999999997 4556666666 678889999999998643222 4899999998
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-. ..+...+-++.+.++|+|||++++.+
T Consensus 78 ~H--~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 DH--SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 42 34667778899999999999999875
No 149
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.65 E-value=7.8e-08 Score=94.37 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhcCCCCcccccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHH
Q 021008 58 VQDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTS 137 (318)
Q Consensus 58 ~~~l~~~l~~l~~~ae~~lE~~~A~~l~~~~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~ta 137 (318)
...+.+.+.++++..+...|..|...++.++- ..+-.+....++.|--...+....++.+++++||| +|..+
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~-------~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~ 125 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRI-------PEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTG-VGGPS 125 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCc-------cchhHHHHHHHhhcchHHHhhcCcccccccccCcC-cCchh
Confidence 34566778888888889999999999888753 22334444444444333333334677799999999 67777
Q ss_pred HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE-eccccCCChhHHHHHHHH
Q 021008 138 IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF-LAALVGMDKDEKIRVIDH 216 (318)
Q Consensus 138 i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~-~aalvgm~~~~k~~vl~~ 216 (318)
..++. +.++.++|+|.++..+.++...... .++.++..|+.+|....|++.+.||.|+ +++..++ .....++++
T Consensus 126 ~~i~~--f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~--~~~~~~y~E 200 (364)
T KOG1269|consen 126 RYIAV--FKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHA--PDLEKVYAE 200 (364)
T ss_pred HHHHH--hccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEeecccC--CcHHHHHHH
Confidence 78875 4789999999999999999998887 8898999999999999999999999888 4666554 578899999
Q ss_pred HHHhccCCeEEEEEc
Q 021008 217 LAKYMAPGALLMLRS 231 (318)
Q Consensus 217 l~r~LkpGg~lv~r~ 231 (318)
++|+++|||++++-.
T Consensus 201 i~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 201 IYRVLKPGGLFIVKE 215 (364)
T ss_pred HhcccCCCceEEeHH
Confidence 999999999998855
No 150
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.64 E-value=4.4e-07 Score=81.20 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=82.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
+.+++||||| .|+..+-+|-. .|..+|+-+|-...-++.-+..++. +|+ ++++++++.+.+ +.....||+|..-|
T Consensus 49 ~~~~lDiGSG-aGfPGipLaI~-~p~~~~~LvEs~~KK~~FL~~~~~~-L~L-~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 49 GKKVLDIGSG-AGFPGIPLAIA-RPDLQVTLVESVGKKVAFLKEVVRE-LGL-SNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp CSEEEEETST-TTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH-HT--SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred CceEEecCCC-CCChhHHHHHh-CCCCcEEEEeCCchHHHHHHHHHHH-hCC-CCEEEEEeeecc-cccCCCccEEEeeh
Confidence 3389999999 69999999975 4999999999999999999999998 899 579999999998 33445899999988
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+- +-..+++-+.+.++|||.++.--+
T Consensus 124 v~-----~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 124 VA-----PLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp SS-----SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred hc-----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 63 445788888999999998877543
No 151
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.62 E-value=2.3e-07 Score=85.67 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=89.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc---CCCCccEEE
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS---ALKDYEVVF 198 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~---~l~~fD~V~ 198 (318)
..-+++|||| .|-..+-+|+++ |...++|||+-...+..|-+.+.+ .|+. +++++++||.++.. +.++.|-|+
T Consensus 49 ~pi~lEIGfG-~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~-~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFG-MGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKE-LGLK-NLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCC-CCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHH-cCCC-cEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 3589999999 678888999875 999999999999999999999998 7774 99999999987532 334789888
Q ss_pred eccccCCChhHH-------HHHHHHHHHhccCCeEEEEEcCC
Q 021008 199 LAALVGMDKDEK-------IRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 199 ~aalvgm~~~~k-------~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
+.--.+|++... ..+++.+++.|+|||.|-+.+.+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 876667765322 46789999999999999998854
No 152
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.61 E-value=3.3e-07 Score=90.22 Aligned_cols=101 Identities=19% Similarity=0.095 Sum_probs=75.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~ 198 (318)
.++.+|||+|||. |.-++.+|. .+.+|+|||+|+.+++.|+++++. .|+ ++++|+++|+.+..... ++||+|+
T Consensus 232 ~~~~~vLDL~cG~-G~~~l~la~---~~~~v~~vE~~~~av~~a~~N~~~-~~~-~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 232 IPVTQMWDLFCGV-GGFGLHCAG---PDTQLTGIEIESEAIACAQQSAQM-LGL-DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred cCCCEEEEccCCc-cHHHHHHhh---cCCeEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 4568999999996 555566775 478999999999999999999988 777 48999999998754322 3699999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
++=-- ..-..++++.+. .++|++++.+-
T Consensus 306 ~DPPr---~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 306 VNPPR---RGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred ECCCC---CCCcHHHHHHHH-hcCCCeEEEEE
Confidence 87411 122345666665 47888766553
No 153
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.58 E-value=5.8e-07 Score=80.47 Aligned_cols=107 Identities=8% Similarity=-0.046 Sum_probs=78.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC---C-Cc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL---K-DY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l---~-~f 194 (318)
..+.+|||++||.+.++ +.++.+ |+ .|++||+|+.+++.++++++. .++.++++++.+|+.+....+ . .|
T Consensus 48 ~~g~~vLDLfaGsG~lg-lea~sr---ga~~v~~vE~~~~a~~~~~~N~~~-~~~~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLG-EEALSR---GAKVAFLEEDDRKANQTLKENLAL-LKSGEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred cCCCEEEEecCCCcHHH-HHHHhC---CCCEEEEEeCCHHHHHHHHHHHHH-hCCcccEEEEehhHHHHHHHhhccCCCc
Confidence 46789999999975555 445543 54 899999999999999999998 788788999999996632211 2 48
Q ss_pred cEEEeccccCCChhHHHHHHHHHHH--hccCCeEEEEEcCC
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAK--YMAPGALLMLRSAH 233 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r--~LkpGg~lv~r~~~ 233 (318)
|+||++=--+ .....++++.+.. .+++||.+++....
T Consensus 123 dvv~~DPPy~--~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 123 NVIYLDPPFF--NGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred eEEEECcCCC--CCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 9999875332 2234555655544 58999999987654
No 154
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.56 E-value=5.9e-07 Score=87.22 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=72.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--------CCCCCCCeEEEEccccc------
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--------DPDLSTRMFFHTTDIMN------ 186 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--------~~gl~~ri~f~~gDa~~------ 186 (318)
++.+|||+|||-+|-. .-+.+. .=..++|+||++++|+.|++.... .....-...|+.+|...
T Consensus 62 ~~~~VLDl~CGkGGDL-~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDL-QKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTH-HHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhH-HHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 7899999999975544 444442 346899999999999999888721 01112356789999874
Q ss_pred cCcCCCCccEEEecc-cc-CCChhHHHH-HHHHHHHhccCCeEEEEEcC
Q 021008 187 VSSALKDYEVVFLAA-LV-GMDKDEKIR-VIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 187 l~~~l~~fD~V~~aa-lv-gm~~~~k~~-vl~~l~r~LkpGg~lv~r~~ 232 (318)
++.....||+|=.+. +. ...-+++++ +|.++.+.|+|||.++....
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 222224899987543 33 223466666 99999999999999988664
No 155
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.55 E-value=3e-07 Score=82.60 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=66.1
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cC-cCCCCccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VS-SALKDYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~-~~l~~fD~ 196 (318)
..+++||||+|||-+-+-+ .|.+. .+++..|||+|++.+..+.+ ..+.++++|+.+ |. +++++||.
T Consensus 11 I~pgsrVLDLGCGdG~LL~-~L~~~--k~v~g~GvEid~~~v~~cv~---------rGv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLA-YLKDE--KQVDGYGVEIDPDNVAACVA---------RGVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHH-HHHHh--cCCeEEEEecCHHHHHHHHH---------cCCCEEECCHHHhHhhCCCCCccE
Confidence 3788999999999654433 34432 59999999999998877642 446789999975 42 56679999
Q ss_pred EEeccccCCChhHHHHHHHHHHHhcc
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMA 222 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~Lk 222 (318)
|+++..+. ......++|+++.|+-|
T Consensus 79 VIlsqtLQ-~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 79 VILSQTLQ-AVRRPDEVLEEMLRVGR 103 (193)
T ss_pred EehHhHHH-hHhHHHHHHHHHHHhcC
Confidence 99776552 23566788988876633
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.53 E-value=3.9e-07 Score=86.85 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=83.9
Q ss_pred CCCEEEEEccCCC--hHHHHHHHHhCCC----CcEEEEEeCChHHHHHHHHHh------------------hc-------
Q 021008 121 FPTKIAFIGSGPL--PLTSIVLAINHLT----TTCFDNYDIDPSANSKALSLV------------------SS------- 169 (318)
Q Consensus 121 ~~~rVL~IGsGpl--p~tai~LA~~~~~----ga~V~gvDid~~ai~~Ar~~~------------------~~------- 169 (318)
.+-||.-.||+++ |+|..++.....+ +.+|+|.|||+.+++.|++-. ..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3479999999863 3444333333221 478999999999999998652 11
Q ss_pred ----CCCCCCCeEEEEccccccCcC-CCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008 170 ----DPDLSTRMFFHTTDIMNVSSA-LKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA 235 (318)
Q Consensus 170 ----~~gl~~ri~f~~gDa~~l~~~-l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~ 235 (318)
...+..+|+|...|+.+.+.. .+.||+|+.-. +...+.+.+.++++.+++.|+|||.|++-.+..+
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEsl 266 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSENF 266 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence 012457899999999874432 45899999744 3355789999999999999999999988765443
No 157
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.53 E-value=1.6e-07 Score=82.59 Aligned_cols=74 Identities=23% Similarity=0.224 Sum_probs=56.3
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC--C-ccEEEe
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK--D-YEVVFL 199 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~--~-fD~V~~ 199 (318)
+.|+|+-|| .|.-++.+|+. ..+|++||+||..++.|+.+++. .|..++|.|++||..++..... . ||+||+
T Consensus 1 ~~vlD~fcG-~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~v-YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCG-VGGNTIQFART---FDRVIAIDIDPERLECAKHNAEV-YGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-T-TSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHH-TT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccC-cCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 368999999 67788999983 67999999999999999999999 9999999999999998754333 2 899986
Q ss_pred cc
Q 021008 200 AA 201 (318)
Q Consensus 200 aa 201 (318)
+-
T Consensus 76 SP 77 (163)
T PF09445_consen 76 SP 77 (163)
T ss_dssp --
T ss_pred CC
Confidence 64
No 158
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=5.6e-07 Score=83.27 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=80.6
Q ss_pred hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCC--cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc
Q 021008 106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTT--TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD 183 (318)
Q Consensus 106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~g--a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD 183 (318)
.+..|+..+.......+.+||+|||| .|-|.+=+.+. .++ -.|.+.|.+|.|+++-++.... ...++.--+.|
T Consensus 56 wL~~Efpel~~~~~~~~~~ilEvGCG-vGNtvfPll~~-~~n~~l~v~acDfsp~Ai~~vk~~~~~---~e~~~~afv~D 130 (264)
T KOG2361|consen 56 WLLREFPELLPVDEKSAETILEVGCG-VGNTVFPLLKT-SPNNRLKVYACDFSPRAIELVKKSSGY---DESRVEAFVWD 130 (264)
T ss_pred HHHHhhHHhhCccccChhhheeeccC-CCcccchhhhc-CCCCCeEEEEcCCChHHHHHHHhcccc---chhhhccccee
Confidence 34455555543333455589999999 57776666653 344 8899999999999998877665 23555444444
Q ss_pred ccc--c--CcCCCCccEE---E-eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 184 IMN--V--SSALKDYEVV---F-LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 184 a~~--l--~~~l~~fD~V---~-~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.. + +...+++|.+ | ++|+ +++...+++.++++++||||.|++|+
T Consensus 131 lt~~~~~~~~~~~svD~it~IFvLSAi---~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 131 LTSPSLKEPPEEGSVDIITLIFVLSAI---HPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred ccchhccCCCCcCccceEEEEEEEecc---ChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 442 1 1233478843 3 3443 45777899999999999999999998
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.51 E-value=6.7e-07 Score=90.11 Aligned_cols=129 Identities=14% Similarity=0.209 Sum_probs=87.2
Q ss_pred CcChhhHHHhhHHHHHHHhhccc--CCCCEEEEEccCCChHHHHHHHH--hCCCCcEEEEEeCChHHHHHHHHHhhcCCC
Q 021008 97 FPYYSNYIKLSQLEFNILTQHCS--RFPTKIAFIGSGPLPLTSIVLAI--NHLTTTCFDNYDIDPSANSKALSLVSSDPD 172 (318)
Q Consensus 97 fpY~~ny~~L~~~E~~~l~~~~~--~~~~rVL~IGsGplp~tai~LA~--~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g 172 (318)
.-.|+.|++.+..-+.-..+... ..+..|++||||.+|++..++.. ++....+|.+|+-++.|+...+++++. -|
T Consensus 160 ~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-n~ 238 (448)
T PF05185_consen 160 PVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-NG 238 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-cC
Confidence 35688888887553332221100 12578999999999998655432 222246899999999999888888777 78
Q ss_pred CCCCeEEEEccccccCcCCCCccEEEeccc--cCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 173 LSTRMFFHTTDIMNVSSALKDYEVVFLAAL--VGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 173 l~~ri~f~~gDa~~l~~~l~~fD~V~~aal--vgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
++++|+++.+|+.++... ...|+|+..-+ .| +-|--.++|....|.|||||+++
T Consensus 239 w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg-~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 239 WGDKVTVIHGDMREVELP-EKVDIIVSELLGSFG-DNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTTEEEEES-TTTSCHS-S-EEEEEE---BTTB-TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CCCeEEEEeCcccCCCCC-CceeEEEEeccCCcc-ccccCHHHHHHHHhhcCCCCEEe
Confidence 999999999999987433 28999984321 12 33455678899999999999875
No 160
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.50 E-value=6.3e-07 Score=86.66 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhcCCCCcccccC-CcChhhHHHhhHHHHHHHh-hccc-CCCCEEEEEccCCChHHHHHHHHhCCCCcEE
Q 021008 74 GLLESHFSSILASFENPIANLNI-FPYYSNYIKLSQLEFNILT-QHCS-RFPTKIAFIGSGPLPLTSIVLAINHLTTTCF 150 (318)
Q Consensus 74 ~~lE~~~A~~l~~~~~P~~~L~~-fpY~~ny~~L~~~E~~~l~-~~~~-~~~~rVL~IGsGplp~tai~LA~~~~~ga~V 150 (318)
++|..+|.-..- +-|-+.|-+ -|-.-||+..+.-.+.... ...+ ..+.+|||||||++++..+..+ +. ++++|
T Consensus 66 alL~~~ygl~~w--dip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~-~~-~~~~~ 141 (321)
T PRK11727 66 ALLAHFYGVAHW--DIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGV-HE-YGWRF 141 (321)
T ss_pred HHHHHhcCCCcc--cCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHh-hC-CCCEE
Confidence 445555543321 334444443 3656677655543322110 0111 3568999999998667766544 43 69999
Q ss_pred EEEeCChHHHHHHHHHhhcCC-CCCCCeEEEE-ccccccCc----CCCCccEEEe
Q 021008 151 DNYDIDPSANSKALSLVSSDP-DLSTRMFFHT-TDIMNVSS----ALKDYEVVFL 199 (318)
Q Consensus 151 ~gvDid~~ai~~Ar~~~~~~~-gl~~ri~f~~-gDa~~l~~----~l~~fD~V~~ 199 (318)
+|+|||+.+++.|+++++. - ++.++|+++. .|..++.. ..+.||+|+.
T Consensus 142 ~atDId~~Al~~A~~Nv~~-Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivc 195 (321)
T PRK11727 142 VGSDIDPQALASAQAIISA-NPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLC 195 (321)
T ss_pred EEEeCCHHHHHHHHHHHHh-ccCCcCcEEEEEccchhhhhhcccccCCceEEEEe
Confidence 9999999999999999998 6 7999999964 45444332 2347999884
No 161
>PHA03411 putative methyltransferase; Provisional
Probab=98.50 E-value=6.3e-07 Score=84.85 Aligned_cols=102 Identities=11% Similarity=0.157 Sum_probs=71.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+.+|||+|||.+.++ +.++++ .++.+|+++|+|+++++.|++.. .+++++++|+.+... ...||+|+.
T Consensus 63 ~~~grVLDLGcGsGils-l~la~r-~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIs 132 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLS-FCMLHR-CKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVIS 132 (279)
T ss_pred ccCCeEEEcCCCCCHHH-HHHHHh-CCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEE
Confidence 34679999999975444 455554 35789999999999999998753 358899999998753 348999986
Q ss_pred cc-ccCCChhHH------------------HHHHHHHHHhccCCeEEEEEc
Q 021008 200 AA-LVGMDKDEK------------------IRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aa-lvgm~~~~k------------------~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.- +...+..++ .++++.+.+.|+|+|.+.+..
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 32 222221111 356677788888888765553
No 162
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.47 E-value=9.4e-07 Score=80.11 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=79.7
Q ss_pred HhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc
Q 021008 105 KLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI 184 (318)
Q Consensus 105 ~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa 184 (318)
+-...|..++... ..++.+|+|.-||-+|++ +.+|+. ..+..|+++|++|.+++..++.++. -++.++|..+.+|+
T Consensus 86 ~rl~~Er~Ri~~~-v~~~e~VlD~faGIG~f~-l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~l-Nkv~~~i~~~~~D~ 161 (200)
T PF02475_consen 86 PRLSTERRRIANL-VKPGEVVLDMFAGIGPFS-LPIAKH-GKAKRVYAVDLNPDAVEYLKENIRL-NKVENRIEVINGDA 161 (200)
T ss_dssp GGGHHHHHHHHTC---TT-EEEETT-TTTTTH-HHHHHH-T-SSEEEEEES-HHHHHHHHHHHHH-TT-TTTEEEEES-G
T ss_pred cccHHHHHHHHhc-CCcceEEEEccCCccHHH-HHHhhh-cCccEEEEecCCHHHHHHHHHHHHH-cCCCCeEEEEcCCH
Confidence 3445666666544 478899999999955555 667763 4688999999999999999999998 78999999999999
Q ss_pred cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
.++.. ...||.|++.- . +.-..++....+.+++||++-
T Consensus 162 ~~~~~-~~~~drvim~l-p----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 162 REFLP-EGKFDRVIMNL-P----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp GG----TT-EEEEEE---T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred HHhcC-ccccCEEEECC-h----HHHHHHHHHHHHHhcCCcEEE
Confidence 99865 55899888654 2 222468888899999999874
No 163
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.44 E-value=1.4e-06 Score=86.33 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=85.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCC-CCCeEEEEccccccCc----CCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDL-STRMFFHTTDIMNVSS----ALKD 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl-~~ri~f~~gDa~~l~~----~l~~ 193 (318)
..++|||++=|=++|+| +..|. -|| +||+||+|..++++|+++++- -|+ .++++|+++|+.+... .-..
T Consensus 216 ~~GkrvLNlFsYTGgfS-v~Aa~---gGA~~vt~VD~S~~al~~a~~N~~L-Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 216 AAGKRVLNLFSYTGGFS-VHAAL---GGASEVTSVDLSKRALEWARENAEL-NGLDGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred ccCCeEEEecccCcHHH-HHHHh---cCCCceEEEeccHHHHHHHHHHHHh-cCCCccceeeehhhHHHHHHHHHhcCCc
Confidence 45999999999876665 55554 488 999999999999999999997 787 4789999999997432 1128
Q ss_pred ccEEEecc--cc---CC--C-hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 194 YEVVFLAA--LV---GM--D-KDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 194 fD~V~~aa--lv---gm--~-~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
||+|+++= +. .+ + ..++.+++..+.+.|+|||++++-+.+
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99999763 22 11 1 357788999999999999999987743
No 164
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.43 E-value=2.4e-06 Score=77.63 Aligned_cols=117 Identities=16% Similarity=0.212 Sum_probs=82.8
Q ss_pred HHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC
Q 021008 112 NILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL 191 (318)
Q Consensus 112 ~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l 191 (318)
+.|.++....+.+||+||||+ |-=+.++|++ +|..+..--|+++....--+..+.. .|+..--.=+.-|+.+-+-.+
T Consensus 16 ~vL~~~l~~~~~~vLEiaSGt-GqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~-~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 16 EVLKQYLPDSGTRVLEIASGT-GQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAE-AGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHhCccCceEEEEcCCc-cHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHh-cCCcccCCCeEeecCCCCCcc
Confidence 334444334444799999995 7888899976 5999999999999986555555554 454322222334555432222
Q ss_pred --------CCccEEEeccccCC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 192 --------KDYEVVFLAALVGM-DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 192 --------~~fD~V~~aalvgm-~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..||.||...++++ +-+.-..+++...+.|+|||.|++-.
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 37999998887755 55778899999999999999998866
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.42 E-value=1.1e-06 Score=84.08 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=60.1
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+|++||||++.+|. .+++. +.+|+++|+|+.+++.+++.+.. .+...+++++.+|+.+.+ +..||.|+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~-~Ll~~---~~~V~avEiD~~li~~l~~~~~~-~~~~~~v~ii~~Dal~~~--~~~~d~Vv 106 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTE-KLLQL---AKKVIAIEIDPRMVAELKKRFQN-SPLASKLEVIEGDALKTE--FPYFDVCV 106 (294)
T ss_pred CCCcCEEEEecCchHHHHH-HHHHh---CCcEEEEECCHHHHHHHHHHHHh-cCCCCcEEEEECCHhhhc--ccccCEEE
Confidence 3677899999999766665 55553 67899999999999999998876 566689999999998753 45789776
Q ss_pred e
Q 021008 199 L 199 (318)
Q Consensus 199 ~ 199 (318)
.
T Consensus 107 a 107 (294)
T PTZ00338 107 A 107 (294)
T ss_pred e
Confidence 3
No 166
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=3e-06 Score=75.95 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=57.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.-.++.|+|+|||+ |.-++-.+ ++.-.+|+|||+||++++.+++++.+ +..++.|.++|+.+.. ..||.|+
T Consensus 43 ~l~g~~V~DlG~GT-G~La~ga~--~lGa~~V~~vdiD~~a~ei~r~N~~~---l~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 43 DLEGKTVLDLGAGT-GILAIGAA--LLGASRVLAVDIDPEALEIARANAEE---LLGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred CcCCCEEEEcCCCc-CHHHHHHH--hcCCcEEEEEecCHHHHHHHHHHHHh---hCCceEEEEcchhhcC---CccceEE
Confidence 46788999999996 55544333 22336899999999999999999997 6688999999998864 3688766
Q ss_pred ec
Q 021008 199 LA 200 (318)
Q Consensus 199 ~a 200 (318)
..
T Consensus 114 mN 115 (198)
T COG2263 114 MN 115 (198)
T ss_pred EC
Confidence 44
No 167
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.41 E-value=1.2e-06 Score=79.06 Aligned_cols=116 Identities=22% Similarity=0.372 Sum_probs=71.8
Q ss_pred CCCCEEEEEccCCC--hHHHHHHHHhC---CC--CcEEEEEeCChHHHHHHHHHh-------------------hcC---
Q 021008 120 RFPTKIAFIGSGPL--PLTSIVLAINH---LT--TTCFDNYDIDPSANSKALSLV-------------------SSD--- 170 (318)
Q Consensus 120 ~~~~rVL~IGsGpl--p~tai~LA~~~---~~--ga~V~gvDid~~ai~~Ar~~~-------------------~~~--- 170 (318)
..+-||.-.||+.+ |+|..++.... .. ..+|+|.|||+.+++.|++-. ...
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 46789999999863 34443333331 12 479999999999999996421 110
Q ss_pred ----CCCCCCeEEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008 171 ----PDLSTRMFFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA 235 (318)
Q Consensus 171 ----~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~ 235 (318)
..+.++|+|...|..+.+...+.||+||.-. ++-++.+.+.++++.+++.|+|||.|++-.+..+
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l 179 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESL 179 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--S
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccC
Confidence 0123579999999999434556999999765 3355889999999999999999999999776544
No 168
>PHA03412 putative methyltransferase; Provisional
Probab=98.39 E-value=2.8e-06 Score=78.87 Aligned_cols=97 Identities=7% Similarity=0.055 Sum_probs=67.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCC--CCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHL--TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~--~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.+.+|||+|||. |.-++.+++++. +..+|++||||+.+++.|+++.. ++.|+.+|+.+.+. .++||+|+
T Consensus 49 ~~grVLDlG~GS-G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~~~~-~~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGI-GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALTTEF-DTLFDMAI 119 (241)
T ss_pred CCCEEEEccChH-HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhcccc-cCCccEEE
Confidence 467999999996 555566776432 36799999999999999997643 37899999987543 34899998
Q ss_pred ecc-cc------CC----ChhHHHHHHHHHHHhccCCeE
Q 021008 199 LAA-LV------GM----DKDEKIRVIDHLAKYMAPGAL 226 (318)
Q Consensus 199 ~aa-lv------gm----~~~~k~~vl~~l~r~LkpGg~ 226 (318)
..= +. .. ....-.++++...+.++||+.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 321 00 00 012244588888887777775
No 169
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.38 E-value=1.1e-05 Score=76.88 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=93.5
Q ss_pred HHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCC--cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE
Q 021008 104 IKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTT--TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT 181 (318)
Q Consensus 104 ~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~g--a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~ 181 (318)
..+++.....|.. ...|-||++|-||++=+-.=.+.+ + |. .+|.-.|.|+..++.+++++++ .|+.+-++|.+
T Consensus 120 ~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRYvlDal~~-~-~~~~~~i~LrDys~~Nv~~g~~li~~-~gL~~i~~f~~ 194 (311)
T PF12147_consen 120 EELIRQAIARLRE--QGRPVRILDIAAGHGRYVLDALEK-H-PERPDSILLRDYSPINVEKGRALIAE-RGLEDIARFEQ 194 (311)
T ss_pred HHHHHHHHHHHHh--cCCceEEEEeccCCcHHHHHHHHh-C-CCCCceEEEEeCCHHHHHHHHHHHHH-cCCccceEEEe
Confidence 4455555555532 268889999999986554333443 3 54 7899999999999999999999 99988889999
Q ss_pred ccccccC--cCCC-CccEEEeccccCC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 182 TDIMNVS--SALK-DYEVVFLAALVGM--DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 182 gDa~~l~--~~l~-~fD~V~~aalvgm--~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+.+-. ..+. ..|+++++.+..+ +...-.+.+..+++.+.|||.|++..
T Consensus 195 ~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 195 GDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred cCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999842 2233 5799999887743 32334557899999999999999977
No 170
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=2.5e-06 Score=79.16 Aligned_cols=110 Identities=15% Similarity=0.295 Sum_probs=74.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC--------------------------
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL-------------------------- 173 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-------------------------- 173 (318)
-.|+.+|||||- -|.-++.+|+.+ ..-.|.|+|||+..|+.||+..+.-...
T Consensus 57 f~~~~~LDIGCN-sG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCN-SGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCC-cchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 467899999997 577778899864 4456999999999999999987751111
Q ss_pred -------CCCeEEEEcccc----c-cCcCCCCccEEEecccc---CC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 174 -------STRMFFHTTDIM----N-VSSALKDYEVVFLAALV---GM--DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 174 -------~~ri~f~~gDa~----~-l~~~l~~fD~V~~aalv---gm--~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+++.|...+-. | +......||+|+.-++- ++ ..+--.++++.+.++|.|||+|++.-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 111222211110 1 11233489998854422 22 23556789999999999999998854
No 171
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.37 E-value=6e-07 Score=82.87 Aligned_cols=107 Identities=15% Similarity=0.094 Sum_probs=80.7
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCC-CCCeEEEEccccccCc--CCCCc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDL-STRMFFHTTDIMNVSS--ALKDY 194 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl-~~ri~f~~gDa~~l~~--~l~~f 194 (318)
+..+.||||.=.| +|+||+.-++ .|| .|..|+.||..+++|.-+==+ .++ ..+++++.||+.++.. ++.+|
T Consensus 132 ~~~G~rVLDtC~G-LGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNPwS-r~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 132 VKRGERVLDTCTG-LGYTAIEALE---RGAIHVITVEKDPNVLELAKLNPWS-RELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred cccCCEeeeeccC-ccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCCCC-ccccccccEEecccHHHHHhcCCcccc
Confidence 3578999999887 9999999887 488 999999999999998644222 222 3469999999998754 34479
Q ss_pred cEEEecc----ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 195 EVVFLAA----LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 195 D~V~~aa----lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|+|+-+- +-| .--..+++++++|.|||||.+.---+
T Consensus 207 DaIiHDPPRfS~Ag--eLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 207 DAIIHDPPRFSLAG--ELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred ceEeeCCCccchhh--hHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 9988432 111 12456899999999999999865443
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.35 E-value=5.7e-06 Score=76.89 Aligned_cols=87 Identities=21% Similarity=0.165 Sum_probs=61.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCcc--E
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYE--V 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD--~ 196 (318)
..++++|||||||++.+|. .++++ +..|+++|+|+++++.+++.... ..+++++++|+.+++.. .|| .
T Consensus 27 ~~~~~~VLEiG~G~G~lt~-~L~~~---~~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~--~~d~~~ 96 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTE-PLLKR---AKKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP--DFPKQL 96 (253)
T ss_pred CCCcCEEEEeCCCCCHHHH-HHHHh---CCcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh--HcCCcc
Confidence 3678999999999866665 56654 45799999999999999877643 36899999999987653 455 3
Q ss_pred EEeccccCCChhHHHHHHHHHH
Q 021008 197 VFLAALVGMDKDEKIRVIDHLA 218 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~ 218 (318)
++++.+ +-..-..++..+.
T Consensus 97 ~vvsNl---Py~i~~~il~~ll 115 (253)
T TIGR00755 97 KVVSNL---PYNISSPLIFKLL 115 (253)
T ss_pred eEEEcC---ChhhHHHHHHHHh
Confidence 444543 2223344554444
No 173
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.34 E-value=3.8e-06 Score=77.10 Aligned_cols=101 Identities=22% Similarity=0.216 Sum_probs=73.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~~l~~fD~V~ 198 (318)
..+.=||||||| -|+++-.|-. +|-..+|+||||.|++.|.+ +. +. =.++.+|.- -+|+.-+.||-|+
T Consensus 49 ~~~~~iLDIGCG-sGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~--~e---~e--gdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 49 PKSGLILDIGCG-SGLSGSVLSD---SGHQWIGVDISPSMLEQAVE--RE---LE--GDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCCcEEEEeccC-CCcchheecc---CCceEEeecCCHHHHHHHHH--hh---hh--cCeeeeecCCCCCCCCCccceEE
Confidence 357899999999 5899988865 68999999999999999986 22 11 134555654 4788888999766
Q ss_pred -eccc---cCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 -LAAL---VGM------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 -~aal---vgm------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++|+ +.. ++..-..++..++..|++|++-++-.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 4442 211 12223467888999999999988754
No 174
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.32 E-value=1e-06 Score=81.56 Aligned_cols=102 Identities=10% Similarity=0.019 Sum_probs=76.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
.+-++|||||+ |.+++.+|..+ -+|+|+|+++++++.|++.... .......++...+..+|....++.|+|..+.
T Consensus 34 h~~a~DvG~G~-Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~-~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 34 HRLAWDVGTGN-GQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPV-TYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred cceEEEeccCC-CcchHHHHHhh---hhheeecCCHHHHHHhhcCCCc-ccccCCccccccccccccCCCcceeeehhhh
Confidence 34899999997 59999999743 4799999999999999887765 3334455666666666765566999998765
Q ss_pred ccCCChhHHHHHHHHHHHhccCCe-EEEEE
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGA-LLMLR 230 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg-~lv~r 230 (318)
-+++ =+-.+++.++.|+|||.| ++++=
T Consensus 109 a~HW--Fdle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 AVHW--FDLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hHHh--hchHHHHHHHHHHcCCCCCEEEEE
Confidence 5544 244679999999999877 66553
No 175
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.32 E-value=3.6e-06 Score=78.63 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=56.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++|+|||||++.+| +.++++ +.+|++||+|+.+++.+++.+.. ..+++++++|+.+++ +..||.|+.
T Consensus 28 ~~~~~VLEIG~G~G~lt-~~L~~~---~~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~--~~~~d~Vv~ 97 (258)
T PRK14896 28 TDGDPVLEIGPGKGALT-DELAKR---AKKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVD--LPEFNKVVS 97 (258)
T ss_pred CCcCeEEEEeCccCHHH-HHHHHh---CCEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCC--chhceEEEE
Confidence 57799999999975555 567764 67999999999999999987754 268999999999865 346887763
No 176
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.31 E-value=3.2e-06 Score=83.66 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=78.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
+.+|||++||. |.=++.+|++. ....|+++|+|+++++.++++++. .++ +.+++.++|+.++......||+|+++-
T Consensus 58 ~~~vLDl~aGs-G~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~-N~~-~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSAS-GIRGIRYALET-GVEKVTLNDINPDAVELIKKNLEL-NGL-ENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcc-cHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH-hCC-CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 46999999996 55557777653 335899999999999999999987 666 457799999987543234799999986
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
. |. ...+++...+.+++||.+.+..
T Consensus 134 ~-Gs----~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GS----PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CC----cHHHHHHHHHHhcCCCEEEEEe
Confidence 4 43 3567888667899999998854
No 177
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.31 E-value=2.5e-06 Score=80.30 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=50.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS 189 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~ 189 (318)
..++.+|||||||++.+| ..++++ +.+|+|+|+|+++++.+++.+.. .+++++++|+.+++.
T Consensus 40 ~~~~~~VLEiG~G~G~lt-~~L~~~---~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALT-EPLLER---AAKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDL 101 (272)
T ss_pred CCCcCeEEEeCCCccHHH-HHHHHh---CCcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCH
Confidence 367789999999986555 566664 45999999999999999886642 689999999998753
No 178
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.29 E-value=2.6e-06 Score=81.23 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=78.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCC-CCeEEEEccccccCc---CCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLS-TRMFFHTTDIMNVSS---ALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~-~ri~f~~gDa~~l~~---~l~~f 194 (318)
..++|||++=|=++|+|.. .|+ .|| +|++||.|..++++|+++++. -|+. ++++|+++|+.+... .-+.|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~-Aa~---gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVA-AAA---GGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHH-HHH---TTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred cCCCceEEecCCCCHHHHH-HHH---CCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCC
Confidence 5789999999988777753 343 477 799999999999999999987 6775 789999999987322 22489
Q ss_pred cEEEecc--cc-C-CC-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAA--LV-G-MD-KDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aa--lv-g-m~-~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+++= +. + .+ ..++.+++..+.+.++|||.|++-+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 9999763 22 1 11 2567789999999999999988766
No 179
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.28 E-value=4.7e-06 Score=81.75 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC----------
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL---------- 191 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l---------- 191 (318)
+.+|||++||.+.++ +.+|+. ..+|+|||+|+.+++.|++++.. .|+ ++++|+++|+.+....+
T Consensus 207 ~~~vLDl~~G~G~~s-l~la~~---~~~v~~vE~~~~ai~~a~~N~~~-~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFT-LALARN---FRRVLATEISKPSVAAAQYNIAA-NGI-DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHH-HHHHhh---CCEEEEEECCHHHHHHHHHHHHH-hCC-CcEEEEECCHHHHHHHHhhcccccccc
Confidence 468999999965555 688874 35899999999999999999987 677 48999999998732111
Q ss_pred -----C-CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 192 -----K-DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 192 -----~-~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+ .||+|+++=== ..-..++++.+.+ |++++.+
T Consensus 281 ~~~~~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyv 318 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYI 318 (362)
T ss_pred cccccCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEE
Confidence 1 58999987511 1223455555544 5554433
No 180
>PRK04148 hypothetical protein; Provisional
Probab=98.27 E-value=9.4e-06 Score=69.18 Aligned_cols=93 Identities=19% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCCCEEEEEccCCChH-HHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC-CccEE
Q 021008 120 RFPTKIAFIGSGPLPL-TSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK-DYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~-tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~-~fD~V 197 (318)
..++||++|||| .|. .+..|++ .|..|+++|+|+++++.|++. .++++.+|.++-..++- .+|+|
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHHhcCCEE
Confidence 456899999999 565 6677775 499999999999999988764 25789999998665543 89999
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.-- +..+-..-+.++++.+ |+-++++-
T Consensus 82 ysir----pp~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 82 YSIR----PPRDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred EEeC----CCHHHHHHHHHHHHHc--CCCEEEEc
Confidence 9544 3456667777777655 45565654
No 181
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.27 E-value=1.3e-05 Score=75.77 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=67.3
Q ss_pred hhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE
Q 021008 101 SNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH 180 (318)
Q Consensus 101 ~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~ 180 (318)
+.|+.++-.+.+... ...+..|||+|||.+.++. .+++. +|.++|++||.|+.|+.+|.+++.+ +++.+++.++
T Consensus 131 EE~V~~Vid~~~~~~---~~~~~~ildlgtGSGaIsl-sll~~-L~~~~v~AiD~S~~Ai~La~eN~qr-~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSE---HSKHTHILDLGTGSGAISL-SLLHG-LPQCTVTAIDVSKAAIKLAKENAQR-LKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhh---hcccceEEEecCCccHHHH-HHHhc-CCCceEEEEeccHHHHHHHHHHHHH-HhhcCceEEE
Confidence 455555555544433 2567799999999766664 55544 5899999999999999999999999 9999999998
Q ss_pred ----Ecccccc-CcCCCCccEEE
Q 021008 181 ----TTDIMNV-SSALKDYEVVF 198 (318)
Q Consensus 181 ----~gDa~~l-~~~l~~fD~V~ 198 (318)
++|..+- +.-++.+|++.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ecccccccccccccccCceeEEe
Confidence 5566542 22334677665
No 182
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.9e-06 Score=74.41 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=81.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCC-CCcEEEEEeCChHHHHHHHHHhhcCC-------CC-CCCeEEEEccccccCcC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHL-TTTCFDNYDIDPSANSKALSLVSSDP-------DL-STRMFFHTTDIMNVSSA 190 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~-~ga~V~gvDid~~ai~~Ar~~~~~~~-------gl-~~ri~f~~gDa~~l~~~ 190 (318)
.++.+.|+||||. |+-+-|+|+-.. +|..++|||.=++.++.+++++.++- .+ ..+..|++||....-.+
T Consensus 81 ~pG~s~LdvGsGS-GYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 81 QPGASFLDVGSGS-GYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred ccCcceeecCCCc-cHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 7899999999996 555557775322 45556999999999999999887621 11 35789999999988767
Q ss_pred CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc-CCCcccc
Q 021008 191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS-AHGARAF 238 (318)
Q Consensus 191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~-~~g~r~~ 238 (318)
..+||.|++-|-+ .++-+++...|+|||.+++-- .++..+.
T Consensus 160 ~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~~~~~~~q~ 201 (237)
T KOG1661|consen 160 QAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPVGQDGGTQY 201 (237)
T ss_pred cCCcceEEEccCc-------cccHHHHHHhhccCCeEEEeecccCceeE
Confidence 7799999987633 234445568889999887644 4455443
No 183
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.24 E-value=7.4e-06 Score=72.19 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=71.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccc-c--C-cCCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMN-V--S-SALKD 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~-l--~-~~l~~ 193 (318)
..+++||++||| .|+.++.+|+. ..+++|+.-|.++ +++..+.+++. -+ ...++++..-|=.+ . . .....
T Consensus 44 ~~~~~VLELGaG-~Gl~gi~~a~~-~~~~~Vv~TD~~~-~l~~l~~Ni~~-N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 44 FRGKRVLELGAG-TGLPGIAAAKL-FGAARVVLTDYNE-VLELLRRNIEL-NGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp TTTSEEEETT-T-TSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT-T--------EEEE--TTS-HHHHHHS-SS
T ss_pred cCCceEEEECCc-cchhHHHHHhc-cCCceEEEeccch-hhHHHHHHHHh-ccccccccccCcEEEecCccccccccccc
Confidence 688999999999 69999999974 3688999999999 99999999886 44 56778887765432 1 0 12247
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
||+|+.+-.+- +.+.-..++.-+.+.++|+|.+++-.
T Consensus 120 ~D~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 120 FDVILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp BSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CCEEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99999766543 45677889999999999999866644
No 184
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=1.6e-06 Score=74.96 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+++++++||| .|+-++.. .++..-.|.|+||||+|++.+++++.. +.-++.+.++|..++....+.||.+++
T Consensus 47 iEgkkl~DLgcg-cGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeE---fEvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 47 IEGKKLKDLGCG-CGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEE---FEVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred ccCcchhhhcCc-hhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHH---hhhhhheeeeeccchhccCCeEeeEEe
Confidence 578999999999 57666433 444567899999999999999999988 556679999999998766678997765
Q ss_pred cccc
Q 021008 200 AALV 203 (318)
Q Consensus 200 aalv 203 (318)
.--.
T Consensus 121 NppF 124 (185)
T KOG3420|consen 121 NPPF 124 (185)
T ss_pred cCCC
Confidence 5433
No 185
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.19 E-value=4.2e-05 Score=72.37 Aligned_cols=115 Identities=22% Similarity=0.324 Sum_probs=85.2
Q ss_pred CCCEEEEEccCCC--hHHHHHHHHhCCC-----CcEEEEEeCChHHHHHHHHHh-------------------hcCC-C-
Q 021008 121 FPTKIAFIGSGPL--PLTSIVLAINHLT-----TTCFDNYDIDPSANSKALSLV-------------------SSDP-D- 172 (318)
Q Consensus 121 ~~~rVL~IGsGpl--p~tai~LA~~~~~-----ga~V~gvDid~~ai~~Ar~~~-------------------~~~~-g- 172 (318)
.+-||.-.||+++ |+|..++..++++ ..+|++.|||..+++.|++-. .+.. |
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999864 5665555555553 589999999999999996321 1100 1
Q ss_pred ------CCCCeEEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008 173 ------LSTRMFFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA 235 (318)
Q Consensus 173 ------l~~ri~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~ 235 (318)
+...|+|...|..+-+...+.||+||.-. ++-++.+.+.+++...+..|+|||.|++-....+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCccc
Confidence 12457888888876543445899999755 3356889999999999999999999999775443
No 186
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.19 E-value=1.3e-05 Score=78.48 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=68.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC------C----
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA------L---- 191 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~------l---- 191 (318)
+.+|||+|||. |.-++.+|+. ...|+|||+++++++.|+++++. .|+ ++++|+.+|+.+.... +
T Consensus 198 ~~~vlDl~~G~-G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~-~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGN-GNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAA-NNI-DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccc-cHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHH-cCC-CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 45799999996 5555688874 34899999999999999999987 677 4699999999874321 1
Q ss_pred ------CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 192 ------KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 192 ------~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
..||+||++== ......++++.+.+ |++++.+
T Consensus 272 ~~~~~~~~~d~v~lDPP---R~G~~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPP---RAGLDPDTCKLVQA---YERILYI 309 (353)
T ss_pred ccccccCCCCEEEECCC---CCCCcHHHHHHHHc---CCcEEEE
Confidence 13899998741 01223455555544 6555544
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.18 E-value=9.5e-06 Score=83.03 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=86.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~V 197 (318)
....-+|+||||- |-..+.+|+.+ |+..++|||+....+..|.+.... .|+ .++.++++|+..+.. ..+++|-|
T Consensus 346 ~~~p~~lEIG~G~-G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~-~~l-~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGM-GEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGE-QNI-TNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCc-hHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH-cCC-CeEEEEcCCHHHHHHhcCcccccEE
Confidence 4567999999995 66667889876 999999999999999999888776 677 678899998854432 33479999
Q ss_pred EeccccCCChh--HH-----HHHHHHHHHhccCCeEEEEEcCC
Q 021008 198 FLAALVGMDKD--EK-----IRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 198 ~~aalvgm~~~--~k-----~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
|+.--.+|++. .| ..+++.+++.|+|||.+-+++.+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 98765666542 22 45788999999999999998854
No 188
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=9.4e-06 Score=74.38 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=80.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
+++++|||||+ |+.++-||- ..|+.+||=+|-....+.-=+.+... +|+ ++++++++.+.+...+...||+|..-|
T Consensus 68 ~~~~~DIGSGa-GfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~e-L~L-~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGA-GFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKE-LGL-ENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCC-CCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHH-hCC-CCeEEehhhHhhcccccccCcEEEeeh
Confidence 78999999995 999999984 35899999999999999999999998 787 679999999998753322299999888
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+- .-..+.+-+...+++||.++.
T Consensus 144 va-----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 144 VA-----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred cc-----chHHHHHHHHHhcccCCcchh
Confidence 63 334566667889999887653
No 189
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.14 E-value=8.8e-06 Score=75.21 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=58.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe-EEEEcccc-----ccCcCCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM-FFHTTDIM-----NVSSALKD 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri-~f~~gDa~-----~l~~~l~~ 193 (318)
..+++|||||||++++|- ++++. ...+|++||+++.++... +... .++ .+...|+. ++..++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~-~l~~~--ga~~v~avD~~~~~l~~~--l~~~-----~~v~~~~~~ni~~~~~~~~~~d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTD-CALQK--GAKEVYGVDVGYNQLAEK--LRQD-----ERVKVLERTNIRYVTPADIFPDFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHHH-HHHHc--CCCEEEEEeCCHHHHHHH--HhcC-----CCeeEeecCCcccCCHhHcCCCcee
Confidence 477899999999988775 66652 235899999999887762 2221 222 12223333 33334457
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
||++|++. ..++..+.+.|+| |.+++
T Consensus 144 ~DvsfiS~---------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 144 FDVSFISL---------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeEEEeeh---------HhHHHHHHHHhCc-CeEEE
Confidence 89888664 2268899999999 65543
No 190
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=3.9e-05 Score=75.18 Aligned_cols=111 Identities=13% Similarity=0.213 Sum_probs=85.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC---Ccc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK---DYE 195 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~---~fD 195 (318)
+.++.+|||.=++|+|-|+...+.-..+|..|+++|+|+..+..-++++++ +|... +..++.|+..++.... .||
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R-lG~~n-v~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR-LGVRN-VIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH-cCCCc-eEEEecccccccccccccCcCc
Confidence 478899999999999999854433222357789999999999999999999 88865 8888888876543332 499
Q ss_pred EEEecccc---CC---Ch---------------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALV---GM---DK---------------DEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalv---gm---~~---------------~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.|++++=+ |+ ++ .--.++|++..+.+||||.|++..
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99988744 22 00 113568999999999999999865
No 191
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.13 E-value=8.5e-06 Score=76.03 Aligned_cols=151 Identities=14% Similarity=0.050 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhhcccccHHHHHHHHHHHHHHhhHHHHH--HHHHHhhcCCCCcccccCCcChhhHHHh
Q 021008 29 KDVNMLFTNLVVTCMPPNYPIDVTKLCQSVQDIRSKLIRLCGEAEGLLES--HFSSILASFENPIANLNIFPYYSNYIKL 106 (318)
Q Consensus 29 ~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ae~~lE~--~~A~~l~~~~~P~~~L~~fpY~~ny~~L 106 (318)
+.+++.-.+|-..|.--- ...|..+.+..++.+ +.+.+--|. .|.+.+.+... ++..+++++..+
T Consensus 29 ~a~k~~k~~LH~i~gay~------~~~p~~~~ll~~l~~--a~~~~D~e~~~~~~r~lL~~Ha-----ST~ERl~~Ld~f 95 (251)
T PF07091_consen 29 EAVKATKRRLHQIFGAYL------EGRPDYDALLRKLQE--ALDVGDPEAIRAWCRRLLAGHA-----STRERLPNLDEF 95 (251)
T ss_dssp HHHHHHHHHHHCCTCCCS------SS---HHHHHHHHHH--HHCTTHHHHHHHHHHHHHHTSH-----HHHCCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------cCCCCHHHHHHHHHh--ccCcCCHHHHHHHHHHHHhhcc-----chhhhhhhHHHH
Confidence 446777777777664311 011334444455544 122222222 23334444322 445566677777
Q ss_pred hHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc
Q 021008 107 SQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN 186 (318)
Q Consensus 107 ~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~ 186 (318)
.+.+++. .+.|.+|+|||||--|++..++.. .++++++|+|||...++..++.... +| -+.++...|...
T Consensus 96 Y~~if~~-----~~~p~sVlDigCGlNPlalp~~~~--~~~a~Y~a~DID~~~ve~l~~~l~~-l~--~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 96 YDEIFGR-----IPPPDSVLDIGCGLNPLALPWMPE--APGATYIAYDIDSQLVEFLNAFLAV-LG--VPHDARVRDLLS 165 (251)
T ss_dssp HHHHCCC-----S---SEEEEET-TTCHHHHHTTTS--STT-EEEEEESBHHHHHHHHHHHHH-TT---CEEEEEE-TTT
T ss_pred HHHHHhc-----CCCCchhhhhhccCCceehhhccc--CCCcEEEEEeCCHHHHHHHHHHHHh-hC--CCcceeEeeeec
Confidence 7776553 256999999999999999988865 4789999999999999999999998 44 556666677765
Q ss_pred cCcCCCCccEEEecccc
Q 021008 187 VSSALKDYEVVFLAALV 203 (318)
Q Consensus 187 l~~~l~~fD~V~~aalv 203 (318)
-+. -...|+.++-=++
T Consensus 166 ~~~-~~~~DlaLllK~l 181 (251)
T PF07091_consen 166 DPP-KEPADLALLLKTL 181 (251)
T ss_dssp SHT-TSEESEEEEET-H
T ss_pred cCC-CCCcchhhHHHHH
Confidence 321 1268988765544
No 192
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.13 E-value=3.2e-05 Score=68.59 Aligned_cols=117 Identities=14% Similarity=0.111 Sum_probs=77.1
Q ss_pred CCCCEEEEEccCC--ChHHHHHHHHhCCC-----CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC
Q 021008 120 RFPTKIAFIGSGP--LPLTSIVLAINHLT-----TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK 192 (318)
Q Consensus 120 ~~~~rVL~IGsGp--lp~tai~LA~~~~~-----ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~ 192 (318)
.++..|+|-=||. +++.+..++....| ...+.|.|+|+++++.|++++.. .|+...+.|..+|+.+++...+
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~-ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA-AGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH-TT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh-cccCCceEEEecchhhcccccC
Confidence 6778999866664 33334444332110 11399999999999999999999 9999999999999999985556
Q ss_pred CccEEEeccccCCC-------hhHHHHHHHHHHHhccCCeEEEEEcCCCccc
Q 021008 193 DYEVVFLAALVGMD-------KDEKIRVIDHLAKYMAPGALLMLRSAHGARA 237 (318)
Q Consensus 193 ~fD~V~~aalvgm~-------~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~ 237 (318)
.+|+|+++-=-|.- ..-+.++++++.+++++..++++.....+..
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~ 157 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEK 157 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHH
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 89999976533321 1234567888999999977777766544433
No 193
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.09 E-value=2.1e-05 Score=75.71 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=75.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC----CeEEEEccccc------cCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST----RMFFHTTDIMN------VSS 189 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~----ri~f~~gDa~~------l~~ 189 (318)
.+++.++++|||-+ ...+-+-+. .=..++|+||.+..|+.|++.-+.-.+..+ .+.|++||... +++
T Consensus 116 ~~~~~~~~LgCGKG-GDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKG-GDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred ccccccceeccCCc-ccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 78899999999965 455555442 234799999999999999887664122222 47899999874 233
Q ss_pred CCCCccEEEecccc--CC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 190 ALKDYEVVFLAALV--GM-DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 190 ~l~~fD~V~~aalv--gm-~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++.+||+|=.+--. .+ +.+.-...+.++++.|+|||+++-.-
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 33359988643212 11 23344457899999999999998855
No 194
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.07 E-value=9.6e-05 Score=57.39 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=69.4
Q ss_pred EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc--cCcCC-CCccEEEecc
Q 021008 125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN--VSSAL-KDYEVVFLAA 201 (318)
Q Consensus 125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~--l~~~l-~~fD~V~~aa 201 (318)
++++|||+ |... .+++....+..++|+|+++.+++.++..... .+... +.+..+|... ++... ..||++....
T Consensus 52 ~ld~~~g~-g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGT-GRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGL-VDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCc-CHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCc-eEEEEeccccCCCCCCCCCceeEEeeee
Confidence 99999996 4443 4443221225899999999999996554432 12211 7888899876 55554 3799984333
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
..... .....+.++.+.++|||.+++...
T Consensus 128 ~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLL--PPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 32211 168899999999999999988774
No 195
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.03 E-value=4.7e-05 Score=67.28 Aligned_cols=106 Identities=13% Similarity=0.205 Sum_probs=83.7
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-----CC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-----KD 193 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-----~~ 193 (318)
...+.-||++|-|++.+|-..|++.+ +...++.|+.|++....-++.... ++|+.||+.++...+ ..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv-~~~~L~~iE~~~dF~~~L~~~~p~-------~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGV-RPESLTAIEYSPDFVCHLNQLYPG-------VNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCC-CccceEEEEeCHHHHHHHHHhCCC-------ccccccchhhHHHHHhhcCCCe
Confidence 46788999999999999999898765 788999999999888776665433 569999999875222 26
Q ss_pred ccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 194 YEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 194 fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
||.|+..- +...+...+.++++.+..++++||.++--..
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 89888442 2233667889999999999999999886553
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.01 E-value=1.9e-05 Score=75.72 Aligned_cols=80 Identities=14% Similarity=-0.016 Sum_probs=62.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC----CCc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL----KDY 194 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l----~~f 194 (318)
+.++..++|.+||.+|.|.. +++.+.++++|+|+|+|++|++.|++.... .+|++++++|..++...+ .++
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~-il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRA-ILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred CCCCCEEEEeCcCChHHHHH-HHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHHHHHHHHHcCCCcc
Confidence 35678999999998777754 555543478999999999999999987643 479999999998754222 279
Q ss_pred cEEEecccc
Q 021008 195 EVVFLAALV 203 (318)
Q Consensus 195 D~V~~aalv 203 (318)
|.|+++--|
T Consensus 92 DgIl~DLGv 100 (296)
T PRK00050 92 DGILLDLGV 100 (296)
T ss_pred CEEEECCCc
Confidence 999987655
No 197
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.98 E-value=3.3e-05 Score=79.06 Aligned_cols=106 Identities=19% Similarity=0.247 Sum_probs=71.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc------ccccCc----
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD------IMNVSS---- 189 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD------a~~l~~---- 189 (318)
.+|.+|+.+|+|+.|+.++..|+.+ |++|+++|++++..+.++++=.. . ..+.....+ +.++..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~-~---v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAE-F---LELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCe-E---EEeccccccccccchhhhcchhHHH
Confidence 5799999999999999999999874 89999999999999988764211 0 001110000 111111
Q ss_pred --------CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 190 --------ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 190 --------~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
..+++|+|+..+.+.-. ....-+.++..+.|||||+++.-..
T Consensus 237 ~~~~~~~~~~~gaDVVIetag~pg~-~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 237 AEMALFAEQAKEVDIIITTALIPGK-PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHhccCCCCEEEECCCCCcc-cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 12479999988875211 1122345899999999999877654
No 198
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.97 E-value=6.1e-05 Score=71.05 Aligned_cols=108 Identities=24% Similarity=0.328 Sum_probs=67.2
Q ss_pred CCCEEEEEccCCChHHH--HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--------C
Q 021008 121 FPTKIAFIGSGPLPLTS--IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--------A 190 (318)
Q Consensus 121 ~~~rVL~IGsGplp~ta--i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--------~ 190 (318)
.=++.|||||| +|... =-.|++..|+++|+-||+||-+++.||.+... . -..+..++.+|+.+... .
T Consensus 68 GIrQFLDlGsG-lPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-~-~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSG-LPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-N-PRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET---S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccC-CCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-C-CCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 44899999999 88543 23455556999999999999999999999875 1 12359999999997321 1
Q ss_pred CCCcc---EEEecc-ccCC-ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 191 LKDYE---VVFLAA-LVGM-DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 191 l~~fD---~V~~aa-lvgm-~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+=.|| .|.+.+ |..+ +.++..++++.+...|.||..|++..
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 11233 333333 3333 44788899999999999999999865
No 199
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.97 E-value=6.9e-06 Score=75.32 Aligned_cols=105 Identities=24% Similarity=0.220 Sum_probs=74.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC----CccE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK----DYEV 196 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~----~fD~ 196 (318)
....|++.=||.+|-| +..|. .++.|++|||||.-|+.|+.+++- .|..+||+|++||..++...++ -+|+
T Consensus 94 ~~~~iidaf~g~gGnt-iqfa~---~~~~VisIdiDPikIa~AkhNaei-YGI~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNT-IQFAL---QGPYVIAIDIDPVKIACARHNAEV-YGVPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchH-HHHHH---hCCeEEEEeccHHHHHHHhcccee-ecCCceeEEEechHHHHHHHHhhhhheeee
Confidence 6678888888865555 45554 389999999999999999999999 9999999999999998643332 3567
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
||.+---|-+---+..+ -.+..++.|-|.-++|.
T Consensus 169 vf~sppwggp~y~~~~~-~DL~~~~~p~~~~~fk~ 202 (263)
T KOG2730|consen 169 VFLSPPWGGPSYLRADV-YDLETHLKPMGTKIFKS 202 (263)
T ss_pred eecCCCCCCcchhhhhh-hhhhhhcchhHHHHHHh
Confidence 77665333232223333 34556666665555554
No 200
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.97 E-value=0.0001 Score=69.78 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=69.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCC-CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLT-TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~-ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
-.|++|||+|||| .|+++.+...++ --++++||.|+.+++.|+.+++. ........+......+. ......|+|+
T Consensus 32 f~P~~vLD~GsGp--Gta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~DLvi 107 (274)
T PF09243_consen 32 FRPRSVLDFGSGP--GTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GPNNRNAEWRRVLYRDF-LPFPPDDLVI 107 (274)
T ss_pred CCCceEEEecCCh--HHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-ccccccchhhhhhhccc-ccCCCCcEEE
Confidence 4789999999996 356666655444 34799999999999999999887 32212221111111111 1223459998
Q ss_pred ecccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+..+ .++.+.+.++++.+.+.+++ .||+-+
T Consensus 108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVE 139 (274)
T PF09243_consen 108 ASYVLNELPSAARAELVRSLWNKTAP--VLVLVE 139 (274)
T ss_pred EehhhhcCCchHHHHHHHHHHHhccC--cEEEEc
Confidence 77644 44447889999999988877 444433
No 201
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.94 E-value=7.2e-05 Score=72.96 Aligned_cols=115 Identities=12% Similarity=0.069 Sum_probs=90.3
Q ss_pred hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc
Q 021008 106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI 184 (318)
Q Consensus 106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa 184 (318)
-...|..++.... ..|.+|+|.=+|-+|+| +-+|+. |.. |+++||+|.|++..+++++. -++..++..++||+
T Consensus 174 rl~~ER~Rva~~v-~~GE~V~DmFAGVGpfs-i~~Ak~---g~~~V~A~diNP~A~~~L~eNi~L-N~v~~~v~~i~gD~ 247 (341)
T COG2520 174 RLSTERARVAELV-KEGETVLDMFAGVGPFS-IPIAKK---GRPKVYAIDINPDAVEYLKENIRL-NKVEGRVEPILGDA 247 (341)
T ss_pred CchHHHHHHHhhh-cCCCEEEEccCCcccch-hhhhhc---CCceEEEEecCHHHHHHHHHHHHh-cCccceeeEEeccH
Confidence 3455666555433 56999999988866666 667762 444 99999999999999999997 78888999999999
Q ss_pred cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.++......||.|++-.. ..-.+++....+.+++||++-+..
T Consensus 248 rev~~~~~~aDrIim~~p-----~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 248 REVAPELGVADRIIMGLP-----KSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred HHhhhccccCCEEEeCCC-----CcchhhHHHHHHHhhcCcEEEEEe
Confidence 999877788999996652 233567777888999999987765
No 202
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.94 E-value=1.4e-05 Score=71.43 Aligned_cols=108 Identities=11% Similarity=0.092 Sum_probs=77.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc----CCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS----ALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~----~l~~f 194 (318)
..+.++||+=||.+.+..-.|.+ | .+|+.||.|+.++...+++++. .+..++++++.+|+..... ....|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR----GA~~v~fVE~~~~a~~~i~~N~~~-l~~~~~~~v~~~d~~~~l~~~~~~~~~f 115 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR----GAKSVVFVEKNRKAIKIIKKNLEK-LGLEDKIRVIKGDAFKFLLKLAKKGEKF 115 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT----T-SEEEEEES-HHHHHHHHHHHHH-HT-GGGEEEEESSHHHHHHHHHHCTS-E
T ss_pred cCCCeEEEcCCccCccHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHH-hCCCcceeeeccCHHHHHHhhcccCCCc
Confidence 46899999977765555545554 5 4899999999999999999999 8888899999999875321 23489
Q ss_pred cEEEeccccCCChhH-HHHHHHHHH--HhccCCeEEEEEcCCC
Q 021008 195 EVVFLAALVGMDKDE-KIRVIDHLA--KYMAPGALLMLRSAHG 234 (318)
Q Consensus 195 D~V~~aalvgm~~~~-k~~vl~~l~--r~LkpGg~lv~r~~~g 234 (318)
|+||++=-- .... ..++++.+. ..|+++|.+++.....
T Consensus 116 DiIflDPPY--~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 116 DIIFLDPPY--AKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEEE--ST--TSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eEEEECCCc--ccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 999988522 2344 377888887 7899999999987443
No 203
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.93 E-value=4.6e-05 Score=75.26 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=78.9
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC-CCccEEEec
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL-KDYEVVFLA 200 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l-~~fD~V~~a 200 (318)
-+|||..||. |.=++.++++. +| ..|+++|+|+++++..+++++. .++ .++.++++|+..+.... ..||+|+++
T Consensus 46 ~~vLD~faGs-G~rgir~a~e~-~ga~~Vv~nD~n~~Av~~i~~N~~~-N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSAS-GIRAIRYAHEI-EGVREVFANDINPKAVESIKNNVEY-NSV-ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCch-hHHHHHHHhhC-CCCCEEEEEeCCHHHHHHHHHHHHH-hCC-CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 5899999996 55556677642 34 5899999999999999999986 555 36899999998765433 379999999
Q ss_pred cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-+ | ....+++.+.+.+++||.|.+..
T Consensus 122 Pf-G----s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 PF-G----TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CC-C----CcHHHHHHHHHhcccCCEEEEEe
Confidence 73 4 23468888999999999998875
No 204
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.93 E-value=4.3e-05 Score=69.99 Aligned_cols=106 Identities=9% Similarity=0.112 Sum_probs=74.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA 200 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a 200 (318)
.-.+.||.|+|-+=.|.-+|... =-+|+-||.++..++.|++.... +...-.++.+.-..+...+.+.||+||++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~---f~~VDlVEp~~~Fl~~a~~~l~~--~~~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV---FDEVDLVEPVEKFLEQAKEYLGK--DNPRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCC--GGCCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh---cCEeEEeccCHHHHHHHHHHhcc--cCCCcceEEecCHhhccCCCCcEeEEEeh
Confidence 45799999999555554444431 35899999999999999987654 23344677777777765555689999998
Q ss_pred ccc-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 201 ALV-GMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 201 alv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..+ +++.++=.++|..+...|+|||++++.+
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 755 5577899999999999999999999988
No 205
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.91 E-value=0.00013 Score=71.38 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=84.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHH--HhhcC---CCCCCCeEEEEccccccCcCCC-
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALS--LVSSD---PDLSTRMFFHTTDIMNVSSALK- 192 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~--~~~~~---~gl~~ri~f~~gDa~~l~~~l~- 192 (318)
...++||.+|.| =|+++.-+-+ +|+ .+||-||.||++++.+++ ..++. .=.+.|++++..|+.+....-+
T Consensus 288 ~~a~~vLvlGGG-DGLAlRellk--yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 288 RGARSVLVLGGG-DGLALRELLK--YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cccceEEEEcCC-chHHHHHHHh--CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 455899999999 5899988875 484 689999999999999983 23320 1124799999999998644333
Q ss_pred CccEEEeccccC----CChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008 193 DYEVVFLAALVG----MDKDEKIRVIDHLAKYMAPGALLMLRSAHGA 235 (318)
Q Consensus 193 ~fD~V~~aalvg----m~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~ 235 (318)
.||+|+++---+ +.+--..+++..+.++++++|.+++-.++..
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 899999875321 1123346788999999999999999876543
No 206
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.90 E-value=4.6e-05 Score=74.24 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=71.9
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccCcCCC-CccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVSSALK-DYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l~-~fD~ 196 (318)
..++++|+.+|.|.+|..++.+|+.. |++|+++|++++-.+.|+++-+. .++.+ |.... .... .||+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd--------~~i~~~~~~~~-~~~~~~~d~ 232 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGAD--------HVINSSDSDAL-EAVKEIADA 232 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCc--------EEEEcCCchhh-HHhHhhCcE
Confidence 47899999999999999999999864 89999999999999999887543 22322 22111 1222 3999
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
|+..+ . ..-+....+.||+||++++-...+
T Consensus 233 ii~tv------~--~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 233 IIDTV------G--PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEECC------C--hhhHHHHHHHHhcCCEEEEECCCC
Confidence 98665 1 334555668999999999887553
No 207
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.86 E-value=6.3e-05 Score=68.46 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=64.8
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhc------CCCC-CCCeEEEEccccccC--
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSS------DPDL-STRMFFHTTDIMNVS-- 188 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~------~~gl-~~ri~f~~gDa~~l~-- 188 (318)
..+.+..+||||| .|-..+..|.. .+++ ..||++.+...+.|+...+. ..|. ..++++..||..+.+
T Consensus 40 l~~~dvF~DlGSG-~G~~v~~aal~--~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 40 LTPDDVFYDLGSG-VGNVVFQAALQ--TGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp --TT-EEEEES-T-TSHHHHHHHHH--H--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred CCCCCEEEECCCC-CCHHHHHHHHH--cCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 4678999999999 67777666654 4776 99999999999988654332 1343 468899999987642
Q ss_pred -cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 189 -SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 189 -~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
..+.+-|+||+..++- +.+-+. -+.+....||||.+++.
T Consensus 117 ~~~~s~AdvVf~Nn~~F-~~~l~~-~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCF-DPDLNL-ALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHGHC-SEEEE--TTT--HHHHH-HHHHHHTTS-TT-EEEE
T ss_pred hhhhcCCCEEEEecccc-CHHHHH-HHHHHHhcCCCCCEEEE
Confidence 1234679999987652 444444 44777789999999875
No 208
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.00017 Score=68.07 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=85.5
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC--CccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK--DYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~--~fD~ 196 (318)
..++.+|++-|+|.+++|- .+|+...|-.++..+|+.+...+.|++-++. -|+++.+++.+-|+...-+..+ .+|.
T Consensus 103 i~PGsvV~EsGTGSGSlSh-aiaraV~ptGhl~tfefH~~Ra~ka~eeFr~-hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSH-AIARAVAPTGHLYTFEFHETRAEKALEEFRE-HGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCCEEEecCCCcchHHH-HHHHhhCcCcceEEEEecHHHHHHHHHHHHH-hCCCcceEEEEeecccCCccccccccce
Confidence 4899999999999888875 6787777889999999999999999999999 8999999999999987655553 7999
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
||++-. .....+-+.++.+|-+|.-++
T Consensus 181 VFLDlP------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 181 VFLDLP------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred EEEcCC------ChhhhhhhhHHHhhhcCceEE
Confidence 998863 334567788889998884333
No 209
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00018 Score=64.53 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCCCEEEEE--ccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC---Cc
Q 021008 120 RFPTKIAFI--GSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK---DY 194 (318)
Q Consensus 120 ~~~~rVL~I--GsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~---~f 194 (318)
..+.++||+ |||.+|+-| +.+ -..+++-||.|..+....+++++. +++..+.+++..|+........ .|
T Consensus 42 i~g~~~LDlFAGSGaLGlEA--lSR---GA~~~~~vE~~~~a~~~l~~N~~~-l~~~~~~~~~~~da~~~L~~~~~~~~F 115 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEA--LSR---GAARVVFVEKDRKAVKILKENLKA-LGLEGEARVLRNDALRALKQLGTREPF 115 (187)
T ss_pred cCCCEEEEecCCccHhHHHH--HhC---CCceEEEEecCHHHHHHHHHHHHH-hCCccceEEEeecHHHHHHhcCCCCcc
Confidence 467899987 666555554 443 245899999999999999999999 8888999999999996432222 49
Q ss_pred cEEEeccccCCChhHHHHHHHH--HHHhccCCeEEEEEcCCC
Q 021008 195 EVVFLAALVGMDKDEKIRVIDH--LAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~--l~r~LkpGg~lv~r~~~g 234 (318)
|+||++=--+....++...+.. -...|+|||.+++.....
T Consensus 116 DlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 116 DLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 9999885332222333444444 345699999999987543
No 210
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=8.2e-05 Score=74.80 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=77.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC---CCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL---KDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l---~~fD~ 196 (318)
.++++|+|.=|| .|.-++.||+ ...+|+|+|+++++++.|+++++. .|+.+ ++|+.+|+.+....+ ..||.
T Consensus 292 ~~~~~vlDlYCG-vG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~-n~i~N-~~f~~~~ae~~~~~~~~~~~~d~ 365 (432)
T COG2265 292 AGGERVLDLYCG-VGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAA-NGIDN-VEFIAGDAEEFTPAWWEGYKPDV 365 (432)
T ss_pred cCCCEEEEeccC-CChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHH-cCCCc-EEEEeCCHHHHhhhccccCCCCE
Confidence 577899999999 5677788996 488999999999999999999998 88866 999999999876655 37899
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
|+++=-= +..-..+++.+. .++|-.++.
T Consensus 366 VvvDPPR---~G~~~~~lk~l~-~~~p~~IvY 393 (432)
T COG2265 366 VVVDPPR---AGADREVLKQLA-KLKPKRIVY 393 (432)
T ss_pred EEECCCC---CCCCHHHHHHHH-hcCCCcEEE
Confidence 9988511 122245777776 466655443
No 211
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.79 E-value=0.00013 Score=70.92 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=72.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.++.|||||||+ |.-+++-|+. ...+|++||-|.-+ +.|++++.. -++++.|+++.|.+.++.-+....|+++-
T Consensus 59 f~dK~VlDVGcGt-GILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~-N~~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 59 FKDKTVLDVGCGT-GILSMFAAKA--GARKVYAVEASSIA-DFARKIVKD-NGLEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred cCCCEEEEcCCCc-cHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHh-cCccceEEEeecceEEEecCccceeEEee
Confidence 4789999999995 6777766763 24579999999877 999999998 89999999999999986333458998875
Q ss_pred ccccCCCh--h-HHHHHHHHHHHhccCCeEEE
Q 021008 200 AALVGMDK--D-EKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 200 aalvgm~~--~-~k~~vl~~l~r~LkpGg~lv 228 (318)
..+ |.-. + .-..++-.==+.|+|||.+.
T Consensus 134 EWM-Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWM-GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhh-hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 441 1000 0 01112222235688888764
No 212
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.78 E-value=0.00016 Score=76.93 Aligned_cols=84 Identities=19% Similarity=0.232 Sum_probs=61.3
Q ss_pred cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEEEeccccCC---ChhHHHHHHHHHHHhcc
Q 021008 148 TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVVFLAALVGM---DKDEKIRVIDHLAKYMA 222 (318)
Q Consensus 148 a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V~~aalvgm---~~~~k~~vl~~l~r~Lk 222 (318)
..++|+|+|+++++.|++++.. .|+.+++.|..+|+.+++... +.||+|+..-=-|. ...+-.+++..+.+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~-~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARR-AGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHH-cCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 3699999999999999999999 999999999999999876443 36999886531111 22333445555555554
Q ss_pred ---CCeEEEEEcC
Q 021008 223 ---PGALLMLRSA 232 (318)
Q Consensus 223 ---pGg~lv~r~~ 232 (318)
||+.+.+-++
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8988766553
No 213
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.77 E-value=5.5e-05 Score=73.71 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccc-cCc-CCC-Ccc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMN-VSS-ALK-DYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~-l~~-~l~-~fD 195 (318)
.++.+|+.+|+||+|+-++.+|+.+ .-++|+.+|++++.++.|++.... +.+..... +... ... ..+ .||
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~-----~~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGA-----DVVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCC-----eEeecCccccHHHHHHHHhCCCCCC
Confidence 4445999999999999999999864 457899999999999999986554 22222212 1111 101 112 699
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
+||-++- ....++...+.++|||++++-.-.+
T Consensus 241 ~vie~~G-------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 241 VVIEAVG-------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred EEEECCC-------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 9996653 2337778889999999999887544
No 214
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.77 E-value=0.00013 Score=70.04 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=67.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.++++|+.+|+|++|+.++.+|+. .|+ +|+++|.+++..+.++++ |...-+.....+..++....+.||+||
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~l-----Ga~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLAREM-----GADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHHc-----CCcEEecCCcccHHHHhccCCCCCEEE
Confidence 568999999999999999999986 487 699999999998888764 221111111112222222223599988
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-.. | . ...++...+.|+|||+++.-.
T Consensus 241 d~~--G----~-~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVS--G----H-PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 543 2 1 235667788999999998765
No 215
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.76 E-value=0.0002 Score=65.18 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=72.9
Q ss_pred EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccC
Q 021008 125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVG 204 (318)
Q Consensus 125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvg 204 (318)
|+||||-. |+-.+.|.++. .-.+++++|+++.-++.|++.++. .|+.++++++.||+.+....-...|.|+++.+ |
T Consensus 1 vaDIGtDH-gyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM-G 76 (205)
T PF04816_consen 1 VADIGTDH-GYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM-G 76 (205)
T ss_dssp EEEET-ST-THHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--GGG---EEEEEEE--
T ss_pred Cceeccch-hHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCCCCCCCEEEEecC-C
Confidence 78999997 77778888752 345799999999999999999999 99999999999999875332224899998874 3
Q ss_pred CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 205 MDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 205 m~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-.--.++++.....++....|++-.
T Consensus 77 --G~lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 77 --GELIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp --HHHHHHHHHHTGGGGTT--EEEEEE
T ss_pred --HHHHHHHHHhhHHHhccCCeEEEeC
Confidence 2456778888877777766777744
No 216
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.76 E-value=7.8e-05 Score=76.31 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=70.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE------ccccc-------
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT------TDIMN------- 186 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~------gDa~~------- 186 (318)
.++.||+.+|+|+.|+.++.+|+.+ |+.|+.+|.+++..+.++++-.. . -.+.+.. |.+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~-~---v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAE-F---LELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCe-E---EeccccccccccccceeecCHHHHH
Confidence 4689999999999999999999864 89999999999988887763211 0 0001000 00100
Q ss_pred -----cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 187 -----VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 187 -----l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
++....++|+||..+++.-.+.+ .=+.++..+.||||++++
T Consensus 236 ~~~~~~~e~~~~~DIVI~TalipG~~aP-~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTALIPGKPAP-KLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHhCCCCEEEECcccCCCCCC-eeehHHHHhhCCCCCEEE
Confidence 22234579999999988432222 237788889999999876
No 217
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.76 E-value=7e-05 Score=73.78 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=77.6
Q ss_pred CCCCEEEE--EccCCChHHHHHHHHhCCCC----------------------------c-------EEEEEeCChHHHHH
Q 021008 120 RFPTKIAF--IGSGPLPLTSIVLAINHLTT----------------------------T-------CFDNYDIDPSANSK 162 (318)
Q Consensus 120 ~~~~rVL~--IGsGplp~tai~LA~~~~~g----------------------------a-------~V~gvDid~~ai~~ 162 (318)
.++..++| -|||+++.-+.+++..-.|| + .+.|+|||+.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 44456765 57777777777776432221 1 37899999999999
Q ss_pred HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCChh-------HHHHHHHHHHHhccCCeEEEEEc
Q 021008 163 ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDKD-------EKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 163 Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~~-------~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+.++++ +|+++.|+|.++|+.++......+|+|+..---|.-.+ -+..+...+.+.++-.++.++-+
T Consensus 270 Ak~NA~~-AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 270 AKANARA-AGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHh-cCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 9999999 99999999999999999876678999885432221111 23344445556666666666655
No 218
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.75 E-value=0.00012 Score=69.52 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=84.8
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-CCC-CccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-ALK-DYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-~l~-~fD~ 196 (318)
+.++.+|||.-+||+|-|+ .+|+.+.....|++.|+++..+..-++..++ .|. ..+.....|+..... ... .||.
T Consensus 83 ~~~~~~VLD~CAapGgKt~-~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r-~g~-~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTT-HLAELMGNKGEIVANDISPKRLKRLKENLKR-LGV-FNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp TTTTSEEEESSCTTSHHHH-HHHHHTTTTSEEEEEESSHHHHHHHHHHHHH-TT--SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccccCCCCcee-eeeecccchhHHHHhccCHHHHHHHHHHHHh-cCC-ceEEEEeeccccccccccccccch
Confidence 4788999999999999987 5666654478999999999999999999998 887 567777799887621 222 5999
Q ss_pred EEecccc---CC---Chh---------------HHHHHHHHHHHhc----cCCeEEEEEc
Q 021008 197 VFLAALV---GM---DKD---------------EKIRVIDHLAKYM----APGALLMLRS 231 (318)
Q Consensus 197 V~~aalv---gm---~~~---------------~k~~vl~~l~r~L----kpGg~lv~r~ 231 (318)
|++++-. |. +.+ -..++|++.++.+ ||||++++-.
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 9987743 11 111 1346889999999 9999999865
No 219
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.74 E-value=1.2e-05 Score=74.21 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=69.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD~V 197 (318)
.+=+++||+|||+ |++..-|-. .-.+.+|||||..|++.|.+. |+=+ +..++|+.... .+...||+|
T Consensus 124 g~F~~~lDLGCGT-GL~G~~lR~---~a~~ltGvDiS~nMl~kA~eK-----g~YD--~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 124 GPFRRMLDLGCGT-GLTGEALRD---MADRLTGVDISENMLAKAHEK-----GLYD--TLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred CccceeeecccCc-CcccHhHHH---HHhhccCCchhHHHHHHHHhc-----cchH--HHHHHHHHHHhhhccCCcccch
Confidence 3458999999995 888876643 256899999999999999753 1111 23345554322 223389988
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..+- |-+-...-..++.-.+..|+|||.+.+..
T Consensus 193 ~AaD-Vl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 193 VAAD-VLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred hhhh-HHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 7433 21223566778999999999999998876
No 220
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.73 E-value=0.00021 Score=68.53 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhcCCCCcccccCC-cChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEE
Q 021008 74 GLLESHFSSILASFENPIANLNIF-PYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDN 152 (318)
Q Consensus 74 ~~lE~~~A~~l~~~~~P~~~L~~f-pY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~g 152 (318)
++|-.+|.-..- +-|-++|-.- |-.-||+..+.--....... .+..-++||||+|+-..=.+.-++.| |++|+|
T Consensus 57 aLLk~dfgl~~w--diP~~~LcP~iP~R~nYi~~i~DlL~~~~~~-~~~~v~glDIGTGAscIYpLLg~~~~--~W~fva 131 (299)
T PF05971_consen 57 ALLKHDFGLDVW--DIPEGRLCPPIPNRLNYIHWIADLLASSNPG-IPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVA 131 (299)
T ss_dssp HHHHHHH----------TTS----HHHHHHHHHHHHHHHT--TCG-CS---EEEEES-TTTTHHHHHHHHHH----EEEE
T ss_pred HHHHHhcCCccc--cCCCCCcCCCCchhHHHHHHHHHHhhccccc-cccceEeecCCccHHHHHHHHhhhhc--CCeEEE
Confidence 444455544331 3344444432 44457877665432221100 12357999999998777667667654 999999
Q ss_pred EeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccC----cCCCCccEEE
Q 021008 153 YDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVS----SALKDYEVVF 198 (318)
Q Consensus 153 vDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~----~~l~~fD~V~ 198 (318)
.|||+.+++.|++++++-.++.++|+++...-. .+. .....||+.+
T Consensus 132 TdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 132 TDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp EES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 999999999999999983489999999866432 221 1113688776
No 221
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.73 E-value=6.6e-05 Score=65.87 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=61.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc------CcC----
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV------SSA---- 190 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l------~~~---- 190 (318)
.+.+|+|+||+|+|+|...+-+ ..+.++|+|||+.+. . ....+.++++|..+. ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~-~~~~~~v~avDl~~~---------~----~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQR-GGPAGRVVAVDLGPM---------D----PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTS-TTTEEEEEEEESSST---------G----S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeec-ccccceEEEEecccc---------c----cccceeeeecccchhhHHHhhhhhcccc
Confidence 5699999999999999865532 124699999999986 1 114566667776542 111
Q ss_pred CCCccEEEecccc---CC---C----hhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 191 LKDYEVVFLAALV---GM---D----KDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 191 l~~fD~V~~aalv---gm---~----~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
...||+|+.+.-. |. + ..--...+.-..+.|+|||.+++.-.+
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1479999977621 11 1 112223344445778999998887644
No 222
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00068 Score=66.13 Aligned_cols=107 Identities=10% Similarity=0.046 Sum_probs=81.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l~~fD~V~ 198 (318)
.+|..|||==||++|+- +... +-|+.++|.|||..+++-|+.+++. .|+ ....+..+ |+.++|...+.||.|.
T Consensus 196 ~~G~~vlDPFcGTGgiL---iEag-l~G~~viG~Did~~mv~gak~Nl~~-y~i-~~~~~~~~~Da~~lpl~~~~vdaIa 269 (347)
T COG1041 196 KRGELVLDPFCGTGGIL---IEAG-LMGARVIGSDIDERMVRGAKINLEY-YGI-EDYPVLKVLDATNLPLRDNSVDAIA 269 (347)
T ss_pred ccCCEeecCcCCccHHH---Hhhh-hcCceEeecchHHHHHhhhhhhhhh-hCc-CceeEEEecccccCCCCCCccceEE
Confidence 77889998777654332 3223 3599999999999999999999998 776 44555555 9999986655699998
Q ss_pred eccccCCC--------hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 199 LAALVGMD--------KDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~--------~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
++---|-. .+-..++|+...++|++||.+++-.+
T Consensus 270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 76432211 13478899999999999999988775
No 223
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.69 E-value=0.00013 Score=71.51 Aligned_cols=71 Identities=13% Similarity=0.019 Sum_probs=50.2
Q ss_pred HHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc
Q 021008 111 FNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV 187 (318)
Q Consensus 111 ~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l 187 (318)
++....+....+.+|+|+=|| .|.-++.||+ ...+|+|||+++++++.|+++++. -|+ ++++|+++++.++
T Consensus 186 ~~~~~~~l~~~~~~vlDlycG-~G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~-N~i-~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 186 YEQALEWLDLSKGDVLDLYCG-VGTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKL-NGI-DNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHCTT-TTEEEEES-T-TTCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHH-TT---SEEEEE--SHHC
T ss_pred HHHHHHHhhcCCCcEEEEeec-CCHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHH-cCC-CcceEEEeeccch
Confidence 333333433444589999999 5666688997 368999999999999999999997 677 6899999988764
No 224
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.67 E-value=0.00013 Score=66.54 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=53.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE-E
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV-F 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V-~ 198 (318)
++...|+|.|||-. .||+....+..|+.+|.-. ..++ ++.+|..++|-+.+..|+| |
T Consensus 71 ~~~~viaD~GCGdA-----~la~~~~~~~~V~SfDLva---------------~n~~--Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 71 PKSLVIADFGCGDA-----KLAKAVPNKHKVHSFDLVA---------------PNPR--VTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp -TTS-EEEES-TT------HHHHH--S---EEEEESS----------------SSTT--EEES-TTS-S--TT-EEEEEE
T ss_pred CCCEEEEECCCchH-----HHHHhcccCceEEEeeccC---------------CCCC--EEEecCccCcCCCCceeEEEE
Confidence 45579999999953 2444332356899999843 1233 5679999999888899965 4
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.-+|.| .+...++.|..|+|||||.|.+.+
T Consensus 129 cLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 129 CLSLMG---TNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp ES---S---S-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EhhhhC---CCcHHHHHHHHheeccCcEEEEEE
Confidence 567776 578999999999999999999987
No 225
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.67 E-value=0.0007 Score=57.51 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=70.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhC---CCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccccCcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINH---LTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMNVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~---~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~l~~~l~~f 194 (318)
.++.+|+|+||| -|+-+..||..+ .++.+|++||.++..++.|++..++ .+ +..+++|..++..+... ....
T Consensus 24 ~~~~~vvD~GsG-~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSG-KGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK-LGSDLEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred CCCCEEEEeCCC-hhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH-hcchhhccchhhccchhhhcc-cCCC
Confidence 678999999999 688888888611 2799999999999999999999888 66 56788998887765432 2355
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
++++--+..| +.. ..+++...+ |+...++
T Consensus 101 ~~~vgLHaCG-~Ls--~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 101 DILVGLHACG-DLS--DRALRLFIR---PNARFLV 129 (141)
T ss_pred eEEEEeeccc-chH--HHHHHHHHH---cCCCEEE
Confidence 6555333344 332 334444433 6655443
No 226
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.61 E-value=0.00032 Score=63.95 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=62.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHh---CCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-----cCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAIN---HLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-----SAL 191 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~---~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-----~~l 191 (318)
.+|+.|+++|.- -|.|++++|.- ..+.++|+|||||-....+. ..+. -.+..||+|++||..+.. ...
T Consensus 31 ~kPd~IIE~Gi~-~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKPDLIIETGIA-HGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIES-HPMSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H--SEEEEE--T-TSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCCCeEEEEecC-CCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhh-ccccCceEEEECCCCCHHHHHHHHHh
Confidence 589999999995 68899988862 22678999999976544332 2233 456799999999998632 122
Q ss_pred ---CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 192 ---KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 192 ---~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
....+|+.++-. ..+.-.+.|+..+..++||+.+++-+.
T Consensus 107 ~~~~~~vlVilDs~H--~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 107 ASPPHPVLVILDSSH--THEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp ----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred hccCCceEEEECCCc--cHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 244588888743 124566778889999999999999773
No 227
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.55 E-value=0.002 Score=62.53 Aligned_cols=122 Identities=14% Similarity=0.201 Sum_probs=84.3
Q ss_pred hhHHHHHHHhhcc------cCCCCEEEEEccCCChHHHHHHHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe
Q 021008 106 LSQLEFNILTQHC------SRFPTKIAFIGSGPLPLTSIVLAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM 177 (318)
Q Consensus 106 L~~~E~~~l~~~~------~~~~~rVL~IGsGplp~tai~LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri 177 (318)
+++.|...|.+++ ..++..|+++|||.+--|.+.|..-. ...++.++||||.++++.+.+.+.. ... ..+
T Consensus 55 ptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~-~~~-p~l 132 (319)
T TIGR03439 55 LTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL-GNF-SHV 132 (319)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-ccC-CCe
Confidence 4566666555544 25667999999998777777665421 1357899999999999999887772 122 334
Q ss_pred EE--EEcccccc----CcC-C-CCccEEE-ecccc-CCChhHHHHHHHHHHH-hccCCeEEEE
Q 021008 178 FF--HTTDIMNV----SSA-L-KDYEVVF-LAALV-GMDKDEKIRVIDHLAK-YMAPGALLML 229 (318)
Q Consensus 178 ~f--~~gDa~~l----~~~-l-~~fD~V~-~aalv-gm~~~~k~~vl~~l~r-~LkpGg~lv~ 229 (318)
++ ++||-.+. +.. . ....+++ .-+.+ .++..+-..+|+++++ .|+||+.|++
T Consensus 133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 44 78877652 221 1 2456655 44445 3467888899999999 9999999888
No 228
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.55 E-value=0.00042 Score=67.67 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++++||||+|+|.|- +|++ .|++|++||..+ .+.++.. ..+|++..+|........+.+|.|+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~-~L~~---rG~~V~AVD~g~----l~~~L~~-----~~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTY-QLVR---RGMFVTAVDNGP----MAQSLMD-----TGQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHH-HHHH---cCCEEEEEechh----cCHhhhC-----CCCEEEEeccCcccCCCCCCCCEEEE
Confidence 688999999999999995 4555 388999999665 2333333 38899999999876433458999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPG 224 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpG 224 (318)
+.. +...++.+-+.+-+..|
T Consensus 277 Dmv-----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMV-----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ecc-----cCHHHHHHHHHHHHhcC
Confidence 863 34567778888888776
No 229
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.55 E-value=0.001 Score=64.73 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=76.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.++-|+|||||. |+-+.+.|+. ...+|.+|+-|+ +.+.||++++. -.+.+||+++.|-+.++.-. ...|+++.
T Consensus 176 F~~kiVlDVGaGS-GILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~-N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 176 FQDKIVLDVGAGS-GILSFFAAQA--GAKKVYAVEASE-MAQYARKLVAS-NNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred cCCcEEEEecCCc-cHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhc-CCccceEEEccCccccccCc-hhccEEEe
Confidence 4678999999995 7777776663 234799999876 67999999998 68899999999999986321 27999885
Q ss_pred ccccCC-ChhHHHHHHHHHHHhccCCeEEE
Q 021008 200 AALVGM-DKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 200 aalvgm-~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
.-+=-| -.+.-.+-+-+.+|.|+|.|...
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 432111 12444555667789999999763
No 230
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00051 Score=64.69 Aligned_cols=72 Identities=14% Similarity=0.003 Sum_probs=55.1
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC-CccEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK-DYEVV 197 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~-~fD~V 197 (318)
..++..|++||.|.+.+|.. |++ .+.+|++|++|+..++.-++.+. ..++++++.+|+....+..- .++.|
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~-Ll~---~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~~~~~v 99 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEP-LLE---RAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLAQPYKV 99 (259)
T ss_pred CCCCCeEEEECCCCCHHHHH-HHh---hcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhcCCCEE
Confidence 35579999999998888875 554 38899999999988888776654 45899999999998644321 45655
Q ss_pred E
Q 021008 198 F 198 (318)
Q Consensus 198 ~ 198 (318)
+
T Consensus 100 V 100 (259)
T COG0030 100 V 100 (259)
T ss_pred E
Confidence 5
No 231
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.52 E-value=0.00071 Score=64.03 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=62.0
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.-||+||-|++-+|-..|- .|..|+++++||.+++.-.+.++. .+.+.+.+++.||.... ++..||.++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~g-tp~~~kLqV~~gD~lK~--d~P~fd~cV 128 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQG-TPKSGKLQVLHGDFLKT--DLPRFDGCV 128 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcC-CCccceeeEEecccccC--CCcccceee
Confidence 47889999999999888876553 399999999999999999999887 67779999999999875 445688776
No 232
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=97.52 E-value=0.0013 Score=60.30 Aligned_cols=107 Identities=21% Similarity=0.149 Sum_probs=78.4
Q ss_pred cCCCCEEEEEccCCChH-HHHHH--HHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCcCCCCc
Q 021008 119 SRFPTKIAFIGSGPLPL-TSIVL--AINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSSALKDY 194 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~-tai~L--A~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~~l~~f 194 (318)
+...+.|+++.|+..+. |++-| |.++ +|.++++|-.++......++.... .|+.+.++|+.||.. ++...+...
T Consensus 39 G~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~-~~~~~~vEfvvg~~~e~~~~~~~~i 116 (218)
T PF07279_consen 39 GWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGE-AGLSDVVEFVVGEAPEEVMPGLKGI 116 (218)
T ss_pred cccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhh-ccccccceEEecCCHHHHHhhccCC
Confidence 46778999997663332 33333 3444 899999999999998888888877 788888999999954 566677899
Q ss_pred cEEEeccccCCChhHHH-HHHHHHHHhccCCeEEEEEcC
Q 021008 195 EVVFLAALVGMDKDEKI-RVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~-~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|+++++. ..++.. ++|+.+ +.=+.|++++..++
T Consensus 117 DF~vVDc----~~~d~~~~vl~~~-~~~~~GaVVV~~Na 150 (218)
T PF07279_consen 117 DFVVVDC----KREDFAARVLRAA-KLSPRGAVVVCYNA 150 (218)
T ss_pred CEEEEeC----CchhHHHHHHHHh-ccCCCceEEEEecc
Confidence 9999998 456666 777654 43345666666764
No 233
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.0008 Score=67.99 Aligned_cols=124 Identities=17% Similarity=0.237 Sum_probs=87.9
Q ss_pred ccCCcChhhHHHhhHHHHHHHhhcccCCCC-EEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCC
Q 021008 94 LNIFPYYSNYIKLSQLEFNILTQHCSRFPT-KIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDP 171 (318)
Q Consensus 94 L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~-rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~ 171 (318)
...|-+|..|..+...-...+ .+-. +++.+|||.- .+..-. |.-| -.|+++|+|+-+++.....-.+
T Consensus 25 ~~~~ewY~~~l~l~~~i~~~~-----~p~~~~~l~lGCGNS---~l~e~l-y~~G~~dI~~iD~S~V~V~~m~~~~~~-- 93 (482)
T KOG2352|consen 25 SDPFEWYGALLSLSGSIMKYL-----SPSDFKILQLGCGNS---ELSEHL-YKNGFEDITNIDSSSVVVAAMQVRNAK-- 93 (482)
T ss_pred CChHHHHHHHHHHHHHHHHhh-----chhhceeEeecCCCC---HHHHHH-HhcCCCCceeccccHHHHHHHHhcccc--
Confidence 456777777777765544433 3444 9999999853 444432 2123 3699999999999988554322
Q ss_pred CCCCCeEEEEccccccCcCCCCccEEE----eccccC-----CChhHHHHHHHHHHHhccCCeEEEE
Q 021008 172 DLSTRMFFHTTDIMNVSSALKDYEVVF----LAALVG-----MDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 172 gl~~ri~f~~gDa~~l~~~l~~fD~V~----~aalvg-----m~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
-..-+++.+.|...+.+++.+||+|+ ++++.. ++...+.+.+.+++|+++|||+++.
T Consensus 94 -~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 94 -ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred -CCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 23568999999999999999999998 455541 1223567889999999999998543
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.49 E-value=0.00055 Score=61.76 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=98.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.....+.|+|+|.++++ ...|+ ..-+|++|+.||...+.|.++..- .|+ .+++++.||+.+..+ ..-|+|+.
T Consensus 31 va~d~~~DLGaGsGiLs-~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v-~g~-~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 31 VAEDTFADLGAGSGILS-VVAAH---AAERVIAIEKDPKRARLAEENLHV-PGD-VNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred HhhhceeeccCCcchHH-HHHHh---hhceEEEEecCcHHHHHhhhcCCC-CCC-cceEEEecccccccc--cccceeHH
Confidence 34589999999976665 33443 267999999999999999999865 666 889999999998755 56798874
Q ss_pred ccccC-CChhHHHHHHHHHHHhccCCeEEEEE---c-CCCc----ccccccCCCc-cccC---CcEEEEEEcCchhHHHH
Q 021008 200 AALVG-MDKDEKIRVIDHLAKYMAPGALLMLR---S-AHGA----RAFLYPVVDP-SDLL---GFEVLSVFHPTDEVINS 266 (318)
Q Consensus 200 aalvg-m~~~~k~~vl~~l~r~LkpGg~lv~r---~-~~g~----r~~lYP~v~~-~~l~---gf~~~~~~~p~~~VvNs 266 (318)
.-+-. +-.+....++..+.+.||-.+.++=. + +... +...|..=-+ ++.. -++......|.++|.|-
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~~~~i~Yde~l~se~~~p~~iye~v~f~k~~PEvy~~ 182 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRPPRTIRYDEGLPSEDIEPEVIYEVVRFDKPIPEVYNK 182 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCccccHHHhhccCccccCCcccccCCCCCccccCcceeEEEEeccCCCchhhcc
Confidence 43211 01256678999999999999988642 2 2222 3344432111 2222 36666666677788775
Q ss_pred HHHHhhc
Q 021008 267 VVLARKY 273 (318)
Q Consensus 267 vv~ark~ 273 (318)
-.-..++
T Consensus 183 ~lele~s 189 (252)
T COG4076 183 KLELETS 189 (252)
T ss_pred eeEEecC
Confidence 5444443
No 235
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.45 E-value=0.00023 Score=66.91 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=69.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC---------------CCCC----------
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD---------------PDLS---------- 174 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~---------------~gl~---------- 174 (318)
.++.+++||||||.-+.++.+++. =-.|+..|..+.-.+.-++.++.. .|-.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 567899999999977776655542 246999999988777555554441 1111
Q ss_pred -CCe-EEEEccccccCc-----CCC-CccEEEecccc---CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 175 -TRM-FFHTTDIMNVSS-----ALK-DYEVVFLAALV---GMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 175 -~ri-~f~~gDa~~l~~-----~l~-~fD~V~~aalv---gm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
..| +++..|+...+. .+. .||+|.....+ .-+.+++.+.++++.+.|||||.|++-..
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 113 377788876321 123 49998744322 22678999999999999999999998763
No 236
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.45 E-value=0.00073 Score=58.08 Aligned_cols=83 Identities=13% Similarity=0.250 Sum_probs=61.4
Q ss_pred EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC--CccEEEe-cc-ccCCC------hhHHHHHHHHHH
Q 021008 149 CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK--DYEVVFL-AA-LVGMD------KDEKIRVIDHLA 218 (318)
Q Consensus 149 ~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~--~fD~V~~-aa-lvgm~------~~~k~~vl~~l~ 218 (318)
+|.|+||-++|++.++++.++ .++.+|++++...-.++..... ..|++++ -. |-|-| .+.....++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~-~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE-AGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH-TT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHh-cCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 589999999999999999999 8888999999999998866554 4896653 22 32322 356678999999
Q ss_pred HhccCCeEEEEEcC
Q 021008 219 KYMAPGALLMLRSA 232 (318)
Q Consensus 219 r~LkpGg~lv~r~~ 232 (318)
+.|+|||++++--.
T Consensus 80 ~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 80 ELLKPGGIITIVVY 93 (140)
T ss_dssp HHEEEEEEEEEEE-
T ss_pred HhhccCCEEEEEEe
Confidence 99999999877653
No 237
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.44 E-value=0.003 Score=61.54 Aligned_cols=160 Identities=9% Similarity=0.064 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhcCCCCccccc---CCcChhhHH---HhhH---HHHHHHhh--ccc-----CCC
Q 021008 59 QDIRSKLIRLCGEAEGLLESHFSSILASFENPIANLN---IFPYYSNYI---KLSQ---LEFNILTQ--HCS-----RFP 122 (318)
Q Consensus 59 ~~l~~~l~~l~~~ae~~lE~~~A~~l~~~~~P~~~L~---~fpY~~ny~---~L~~---~E~~~l~~--~~~-----~~~ 122 (318)
.++-+.+....++....-..++.+.+....+|+.+.. .+.|..-.. ..+. .....+.+ ... ..-
T Consensus 99 ~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v 178 (342)
T KOG3178|consen 99 GSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGV 178 (342)
T ss_pred CchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccC
Confidence 4455666666677777778888999988766664432 366665333 1111 11111111 001 124
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL 202 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal 202 (318)
...+|||+|. |-.+-.+.. ++|. |.+|+.|..-+..++.... .| |+.+-||...= ..+-|+||+...
T Consensus 179 ~~avDvGgGi-G~v~k~ll~-~fp~--ik~infdlp~v~~~a~~~~--~g----V~~v~gdmfq~---~P~~daI~mkWi 245 (342)
T KOG3178|consen 179 NVAVDVGGGI-GRVLKNLLS-KYPH--IKGINFDLPFVLAAAPYLA--PG----VEHVAGDMFQD---TPKGDAIWMKWI 245 (342)
T ss_pred ceEEEcCCcH-hHHHHHHHH-hCCC--CceeecCHHHHHhhhhhhc--CC----cceeccccccc---CCCcCeEEEEee
Confidence 7899999995 555545554 4466 6677888777776655442 22 88888988742 235679999875
Q ss_pred c-CCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 203 V-GMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 203 v-gm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+ +|+.++=.++|.++++-|+|||.+++-+
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 5 6677899999999999999999998876
No 238
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00044 Score=66.58 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=82.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+.+|..||.|-.|+-+--+|-. -|+.|+-+|+|.+.+..-..++ +.|+........++.....+.|+|+-
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f------~~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLF------GGRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CCCccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhh------CceeEEEEcCHHHHHHHhhhccEEEE
Confidence 677899999999999999999874 5999999999998777665544 36788888888888777779999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+-|++-.+.+|. +.+++.+.||||++++
T Consensus 238 aVLIpgakaPkL-vt~e~vk~MkpGsViv 265 (371)
T COG0686 238 AVLIPGAKAPKL-VTREMVKQMKPGSVIV 265 (371)
T ss_pred EEEecCCCCcee-hhHHHHHhcCCCcEEE
Confidence 888855555554 8899899999999875
No 239
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.40 E-value=0.0006 Score=56.95 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=49.6
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV 187 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l 187 (318)
.|+||||| .|..++.+++. .++++|+++|.+|.+.+.+++.++. .++. +++++...+.+-
T Consensus 1 ~vlDiGa~-~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~-n~~~-~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGAN-IGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKL-NNLP-NVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCC-ccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHH-cCCC-cEEEEEeeeeCC
Confidence 37999999 57888888875 4788999999999999999999886 5663 589888877653
No 240
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.33 E-value=0.0029 Score=58.96 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=66.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCC-CccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALK-DYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~-~fD~V 197 (318)
-.+++||+||=+ =++|+.+|-.. +..+|+.+|||+..++.-++.+++ .|+. ++.+..|+.+ +|.++. .||++
T Consensus 43 L~gk~il~lGDD--DLtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~-~gl~--i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 43 LEGKRILFLGDD--DLTSLALALTG-LPKRITVVDIDERLLDFINRVAEE-EGLP--IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp STT-EEEEES-T--T-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHH-HT----EEEE---TTS---TTTSS-BSEE
T ss_pred ccCCEEEEEcCC--cHHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHH-cCCc--eEEEEecccccCCHHHhcCCCEE
Confidence 478999999987 57888888654 678999999999999999999998 6764 9999999986 676665 89999
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCe-EEEEEcCC
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGA-LLMLRSAH 233 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg-~lv~r~~~ 233 (318)
|++=-- ..+--.-++..-...||.-| ...+-.++
T Consensus 117 ~TDPPy--T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 117 FTDPPY--TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp EE---S--SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred EeCCCC--CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 988521 33444557777777888766 44444443
No 241
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.31 E-value=0.00087 Score=67.12 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=63.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++|+.+|+|++|......++. .|++|+.+|+|+...+.|++ .|. +.. +..+ ....+|+|+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~~R~~~A~~-----~G~----~~~--~~~e---~v~~aDVVI~ 263 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDPICALQAAM-----EGY----EVM--TMEE---AVKEGDIFVT 263 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECChhhHHHHHh-----cCC----EEc--cHHH---HHcCCCEEEE
Confidence 579999999999999999888875 48999999999988777754 232 111 1112 2246899986
Q ss_pred ccccCCChhHHHHHHH-HHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVID-HLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~-~l~r~LkpGg~lv~r~ 231 (318)
+.- .+. ++. ...+.||+||+++.-.
T Consensus 264 atG------~~~-~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 TTG------NKD-IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCC------CHH-HHHHHHHhcCCCCcEEEEeC
Confidence 542 222 444 3478999999987654
No 242
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.28 E-value=0.0039 Score=55.29 Aligned_cols=99 Identities=24% Similarity=0.314 Sum_probs=66.5
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc-------CCCC--------CCCeEEEEccccccC
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS-------DPDL--------STRMFFHTTDIMNVS 188 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~-------~~gl--------~~ri~f~~gDa~~l~ 188 (318)
+|..||+|.+|-.-..+... .|.+|+-+|.|++.++.+++.+.+ ...+ -.++++. .|..++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH-
Confidence 68999999987654444433 399999999999999998776553 0111 2456653 444333
Q ss_pred cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 189 SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 189 ~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+.|+|+= +... +.+-|.++|+++.+.++|+.+|...+
T Consensus 77 ---~~adlViE-ai~E-~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 77 ---VDADLVIE-AIPE-DLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp ---CTESEEEE--S-S-SHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred ---hhhheehh-hccc-cHHHHHHHHHHHHHHhCCCceEEecC
Confidence 26888884 3332 67999999999999999999998877
No 243
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.002 Score=58.75 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=80.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC------cCCC-
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS------SALK- 192 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~------~~l~- 192 (318)
.++.+|+|+|+-|+|.|- +++++..++..|++||+.| ...-..+.|+.+|.++-+ ..++
T Consensus 44 ~~~~~ViDLGAAPGgWsQ-va~~~~~~~~~ivavDi~p-------------~~~~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQ-VAAKKLGAGGKIVAVDILP-------------MKPIPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcHHH-HHHHHhCCCCcEEEEECcc-------------cccCCCceEEeeeccCccHHHHHHHHcCC
Confidence 788999999999999985 4666655566799999998 223345999999998632 2333
Q ss_pred -CccEEEecccc---CC---C----hhHHHHHHHHHHHhccCCeEEEEEcCCCccc--ccccCCCccccC-CcEEEEEEc
Q 021008 193 -DYEVVFLAALV---GM---D----KDEKIRVIDHLAKYMAPGALLMLRSAHGARA--FLYPVVDPSDLL-GFEVLSVFH 258 (318)
Q Consensus 193 -~fD~V~~aalv---gm---~----~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~--~lYP~v~~~~l~-gf~~~~~~~ 258 (318)
.+|+|..+..- |. | ..-...+++-...+|+|||.+++-...|.-. ++ ..++ .|+.+....
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l------~~~~~~F~~v~~~K 183 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLL------KALRRLFRKVKIFK 183 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHH------HHHHHhhceeEEec
Confidence 46999965421 11 1 1223344555567999999999987555321 22 1233 677777766
Q ss_pred Cch
Q 021008 259 PTD 261 (318)
Q Consensus 259 p~~ 261 (318)
|..
T Consensus 184 P~a 186 (205)
T COG0293 184 PKA 186 (205)
T ss_pred Ccc
Confidence 654
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.22 E-value=0.0034 Score=57.72 Aligned_cols=104 Identities=20% Similarity=0.212 Sum_probs=82.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+.+++||||-. ++-.++|-+.+ +-.++++.|+++..++.|.+.+.+ .++.++++...+|+.......+.+|++.+
T Consensus 15 ~~~~~iaDIGsDH-AYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDH-AYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCch-hHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCCccccCccCCcCEEEE
Confidence 5667799999987 56666777765 788999999999999999999999 99999999999999775444448999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+.+=| .-=.+++++-...++.=-++++
T Consensus 92 AGMGG---~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 92 AGMGG---TLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred eCCcH---HHHHHHHHHhhhhhcCcceEEE
Confidence 87433 2345788888887775445555
No 245
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0037 Score=57.56 Aligned_cols=116 Identities=9% Similarity=0.133 Sum_probs=82.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc--CCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--ALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--~l~~fD~V 197 (318)
.++.|||.||=| +|+..-.+.++ +-.+=+-|+..|++.++-|...- +-.++|-...|-=.|... +++.||-|
T Consensus 100 tkggrvLnVGFG-MgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw---~ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFG-MGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGW---REKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccc-hHHHHHHHhhc--CCcceEEEecCHHHHHHHHhccc---ccccceEEEecchHhhhccccccCccee
Confidence 789999999999 88887766653 44444568999999988776432 234667766664334322 23479999
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCccc-ccccC
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARA-FLYPV 242 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~-~lYP~ 242 (318)
+.+.+-. .-++-..+.+++.+.|||||++.+-++-|... +.|.+
T Consensus 174 ~yDTy~e-~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~v 218 (271)
T KOG1709|consen 174 YYDTYSE-LYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDV 218 (271)
T ss_pred Eeechhh-HHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhh
Confidence 9887632 23677889999999999999999888655544 55554
No 246
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.20 E-value=0.0031 Score=59.33 Aligned_cols=100 Identities=25% Similarity=0.303 Sum_probs=68.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCC-CC--------CCeEEEEcccccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPD-LS--------TRMFFHTTDIMNV 187 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~g-l~--------~ri~f~~gDa~~l 187 (318)
++|..||+|.+|.+....... .|.+|+.+|++++.++.+++.+.+ ..| +. .++++ +.|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV--AGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH--
Confidence 489999999988776554443 388999999999999876532211 022 11 14443 23322
Q ss_pred CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..+..|+|+.+.-- +..-|.++++++.+.++|+..|+...
T Consensus 79 --~~~~aDlVi~av~e--~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 79 --DLKDADLVIEAATE--NMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --HhccCCeeeecccc--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 24578999987632 34678899999999999998884433
No 247
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.007 Score=54.40 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=73.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..++=+++||||. |.-+-+|++...|++...+.||+|.|.+..++-++. -+.++..+++|..+-... ++.|++.+
T Consensus 42 ~~~~i~lEIG~GS-GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~---n~~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 42 HNPEICLEIGCGS-GVVSTFLASVIGPQALYLATDINPEALEATLETARC---NRVHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred cCceeEEEecCCc-chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh---cCCccceeehhHHhhhcc-CCccEEEE
Confidence 4588999999996 666667888877899999999999999988776665 224477888888764333 57886542
Q ss_pred -ccccCCC-------------------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 -AALVGMD-------------------KDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 -aalvgm~-------------------~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
--.|.-+ ++--.+++.++-..|.|.|++.+-.
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 2222111 1223456666667778888765543
No 248
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.17 E-value=0.0015 Score=62.92 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=64.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeC---ChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDI---DPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDi---d~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~ 196 (318)
.++.+|+.+|+|++|..++.+|+. .|++|++++. +++..+.++++ |.. .+.....|..+. .....||+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~~~-----Ga~-~v~~~~~~~~~~-~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVEEL-----GAT-YVNSSKTPVAEV-KLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHc-----CCE-EecCCccchhhh-hhcCCCCE
Confidence 578999999999999999999986 4889999997 67776666543 321 121111111111 11237999
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
||-.. | ....+....+.|++||++++-.
T Consensus 242 vid~~--g-----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 242 IIEAT--G-----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEECc--C-----CHHHHHHHHHHccCCcEEEEEe
Confidence 98554 2 1236677789999999987654
No 249
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.15 E-value=0.0023 Score=60.59 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=65.7
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC---------CCC---------CCCeEEEEccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD---------PDL---------STRMFFHTTDI 184 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~---------~gl---------~~ri~f~~gDa 184 (318)
++|..||+|.+|.+....... .|.+|+.+|++++.++.+++.+.+. .|. ..++.+. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 689999999988765444333 4889999999999998876543320 011 1123332 222
Q ss_pred cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
......|+|+.+... +.+.|..+++++.+.++|+.+|+.
T Consensus 81 ----~~~~~aDlVieav~e--~~~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 81 ----ESLSDADFIVEAVPE--KLDLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred ----HHhCCCCEEEEcCcC--cHHHHHHHHHHHHhhCCCCeEEEE
Confidence 123478999987532 345689999999999999887754
No 250
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.12 E-value=0.0021 Score=58.25 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=76.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..++|||+.|+|+ |+.+|.-|+. -...|+..|++|..++..+-+++. -| -.+.|...|... ....||+++.
T Consensus 78 VrgkrVLd~gags-gLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~a-ng--v~i~~~~~d~~g---~~~~~Dl~La 148 (218)
T COG3897 78 VRGKRVLDLGAGS-GLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAA-NG--VSILFTHADLIG---SPPAFDLLLA 148 (218)
T ss_pred cccceeeeccccc-ChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhh-cc--ceeEEeeccccC---CCcceeEEEe
Confidence 6789999999996 8999877763 245799999999998888888877 34 568888888765 3348999987
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
.-++ .++..-.+++.-..+....|..+++-+++
T Consensus 149 gDlf-y~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 149 GDLF-YNHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ecee-cCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 6655 24556667777555555666677766643
No 251
>PRK10742 putative methyltransferase; Provisional
Probab=97.12 E-value=0.0017 Score=60.81 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=63.5
Q ss_pred CCCC--EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC------C--CCCCeEEEEccccccCc
Q 021008 120 RFPT--KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP------D--LSTRMFFHTTDIMNVSS 189 (318)
Q Consensus 120 ~~~~--rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~------g--l~~ri~f~~gDa~~l~~ 189 (318)
.++. +|||.=+| +|-.++.+|. .|++|+.||.+|.+...-++..++ + + +..||+++.+|+.+...
T Consensus 85 k~g~~p~VLD~TAG-lG~Da~~las---~G~~V~~vEr~p~vaalL~dgL~r-a~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 85 KGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLAR-GYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCCEEEECCCC-ccHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHH-hhhccccchhhhceEEEEeCcHHHHHh
Confidence 4555 89999999 7888898987 399999999999999988877776 3 2 23689999999988654
Q ss_pred CCC-CccEEEecccc
Q 021008 190 ALK-DYEVVFLAALV 203 (318)
Q Consensus 190 ~l~-~fD~V~~aalv 203 (318)
... .||+||++=..
T Consensus 160 ~~~~~fDVVYlDPMf 174 (250)
T PRK10742 160 DITPRPQVVYLDPMF 174 (250)
T ss_pred hCCCCCcEEEECCCC
Confidence 433 79999987644
No 252
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.11 E-value=0.0011 Score=62.46 Aligned_cols=85 Identities=22% Similarity=0.300 Sum_probs=64.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccE-EE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEV-VF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~-V~ 198 (318)
+...-|+|+|||-. -+|.. ..-.|+.+|+-+ .+-+++.+|..++|-++.+.|+ ||
T Consensus 179 ~~~~vIaD~GCGEa-----kiA~~--~~~kV~SfDL~a-----------------~~~~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 179 PKNIVIADFGCGEA-----KIASS--ERHKVHSFDLVA-----------------VNERVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred cCceEEEecccchh-----hhhhc--cccceeeeeeec-----------------CCCceeeccccCCcCccCcccEEEe
Confidence 45578999999942 34432 245788888732 2235677999999988889996 55
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.-+|.| .+...++.+..|+|+|||.+-+.+
T Consensus 235 CLSLMg---tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 235 CLSLMG---TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred eHhhhc---ccHHHHHHHHHHHhccCceEEEEe
Confidence 667766 577889999999999999998877
No 253
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.11 E-value=0.0024 Score=62.00 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=68.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCCC-----CCCeEEEEccccccCcC
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPDL-----STRMFFHTTDIMNVSSA 190 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~gl-----~~ri~f~~gDa~~l~~~ 190 (318)
-++|..||+|.+|..-...... .|.+|+.+|+++++.+.+++.+.+ ..|+ ..++++.. | +...
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~---l~~a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-T---IEAC 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-C---HHHH
Confidence 4799999999877664333222 499999999999998877653321 0122 13455442 2 2223
Q ss_pred CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....|+|+-+.. -+.+-|..+++++.+.++|+.+|...+
T Consensus 81 v~~aDlViEavp--E~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 81 VADADFIQESAP--EREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred hcCCCEEEECCc--CCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 357899886542 256789999999999999999665544
No 254
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=97.10 E-value=0.0023 Score=61.60 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++||.+|+|++|+.++.+|++...+++|+++|.+++..+.|++ +.. . +.. + ++... ..+|+|+=
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~----~----~~~-~--~~~~~-~g~d~viD 228 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE----T----YLI-D--DIPED-LAVDHAFE 228 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc----e----eeh-h--hhhhc-cCCcEEEE
Confidence 5789999999999999988888753346789999999988888764 211 1 110 1 12111 15898884
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.. |- ......+.+..+.|++||++++-.
T Consensus 229 ~~--G~--~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 229 CV--GG--RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CC--CC--CccHHHHHHHHHhCcCCcEEEEEe
Confidence 33 21 112346777789999999988754
No 255
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.09 E-value=0.0028 Score=61.35 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=73.7
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-----cccccC-cCC-
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-----DIMNVS-SAL- 191 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-----Da~~l~-~~l- 191 (318)
...+.+||.+|+||+|+-++..|+.+ --.+|+.+|+++..++.|+++=.. -+..... +..++. ..+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~~Ga~------~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKKFGAT------VTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHHhCCe------EEeeccccccHHHHHHHHHhhcc
Confidence 47899999999999999999999875 345899999999999999984221 1111111 111111 111
Q ss_pred -CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCCCc
Q 021008 192 -KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDP 245 (318)
Q Consensus 192 -~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v~~ 245 (318)
..||++|-.+... ..++.....+|+||++++.. +|....-+|..+.
T Consensus 240 ~~~~d~~~dCsG~~-------~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~v 286 (354)
T KOG0024|consen 240 KKQPDVTFDCSGAE-------VTIRAAIKATRSGGTVVLVG-MGAEEIQFPIIDV 286 (354)
T ss_pred ccCCCeEEEccCch-------HHHHHHHHHhccCCEEEEec-cCCCccccChhhh
Confidence 2599999666432 12333356899999965554 5544566776553
No 256
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.09 E-value=0.0049 Score=58.54 Aligned_cols=100 Identities=17% Similarity=0.286 Sum_probs=68.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CCC-C--------CCeEEEEcccccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PDL-S--------TRMFFHTTDIMNV 187 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~gl-~--------~ri~f~~gDa~~l 187 (318)
++|..||+|.+|..-...... .|..|+.+|++++.++.+++.+.+. .|. . .++++ +.|.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~--- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL--- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH---
Confidence 589999999877664333222 4999999999999999876553320 121 1 23433 2332
Q ss_pred CcCCCCccEEEeccccCCChhHHHHHHHHHHHhc-cCCeEEEEEc
Q 021008 188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYM-APGALLMLRS 231 (318)
Q Consensus 188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~L-kpGg~lv~r~ 231 (318)
....+.|+|+-+.. -+.+-|..++..+.+.+ +||.+++..+
T Consensus 80 -~~~~~~d~ViEav~--E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 80 -GDFADRQLVIEAVV--EDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred -HHhCCCCEEEEecc--cCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 23457899996542 26688999999999988 8898887766
No 257
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0015 Score=62.48 Aligned_cols=110 Identities=12% Similarity=0.126 Sum_probs=85.1
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC-CCC-CCCeEEEEccccccCcCC--CCc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD-PDL-STRMFFHTTDIMNVSSAL--KDY 194 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-~gl-~~ri~f~~gDa~~l~~~l--~~f 194 (318)
.+.|++||.||.|-+|.-.+.. +|-.=..++-+|||...++.+++..... .|. +.++.++-||+..+-... +.|
T Consensus 119 ~~npkkvlVVgggDggvlrevi--kH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVI--KHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeee--ccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 4889999999999988887655 4523346889999999999999998762 233 579999999998765444 489
Q ss_pred cEEEecc--ccCCChh--HHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAA--LVGMDKD--EKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aa--lvgm~~~--~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|++++ .+| +.. -...+++.+.+.||+||++++-.
T Consensus 197 dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999876 332 332 23468899999999999998855
No 258
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.05 E-value=0.0041 Score=58.58 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=65.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA 200 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a 200 (318)
...++||||+|-++.|. .+|..+ .+|++-|.|+.|..+ + ++ .| .+.+ |..+.......||+|-.-
T Consensus 94 ~~~~lLDlGAGdG~VT~-~l~~~f---~~v~aTE~S~~Mr~r---L-~~-kg----~~vl--~~~~w~~~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTE-RLAPLF---KEVYATEASPPMRWR---L-SK-KG----FTVL--DIDDWQQTDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHH-HHHhhc---ceEEeecCCHHHHHH---H-Hh-CC----CeEE--ehhhhhccCCceEEEeeh
Confidence 56899999999766665 677633 358899999988544 2 22 23 2333 344443333489999866
Q ss_pred cccCCCh-hHHHHHHHHHHHhccCCeEEEEEc
Q 021008 201 ALVGMDK-DEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 201 alvgm~~-~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.++ |. .....+|+++++.|+|+|++++.-
T Consensus 159 NvL--DRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 159 NVL--DRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhh--hccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 654 32 456789999999999999998865
No 259
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.02 E-value=0.0012 Score=65.11 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=65.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|+.||+|+.|..++..++.+ |++|+.+|.+++..+.+.+... ..+.....+..++......+|+|+.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g------~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFG------GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcC------ceeEeccCCHHHHHHHHccCCEEEE
Confidence 3678999999999999999998864 8899999999977655433221 1222211222233333457999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...+.-...+ .-+-++..+.|+||++++--.
T Consensus 237 a~~~~g~~~p-~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 237 AVLIPGAKAP-KLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred ccccCCCCCC-cCcCHHHHhcCCCCCEEEEEe
Confidence 7644111111 113356668899998775433
No 260
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.01 E-value=0.0026 Score=61.37 Aligned_cols=80 Identities=14% Similarity=0.012 Sum_probs=62.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-----CCCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-----ALKD 193 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-----~l~~ 193 (318)
+.++..++|-=+|.+|-|.. +++.+ ++++|+|+|+|++|++.|++.... .+.|++++.++-.++.. .+.+
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~-iL~~l-~~g~vigiD~D~~Al~~ak~~L~~---~~~R~~~i~~nF~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKA-ILEQL-GTGRLIGIDRDPQAIAFAKERLSD---FEGRVVLIHDNFANFFEHLDELLVTK 92 (305)
T ss_pred cCCCCEEEEeCCCChHHHHH-HHHhC-CCCEEEEEcCCHHHHHHHHHHHhh---cCCcEEEEeCCHHHHHHHHHhcCCCc
Confidence 35678999999997677765 45544 569999999999999999998765 45799999999887543 2246
Q ss_pred ccEEEecccc
Q 021008 194 YEVVFLAALV 203 (318)
Q Consensus 194 fD~V~~aalv 203 (318)
+|.|+++--|
T Consensus 93 vDgIl~DLGv 102 (305)
T TIGR00006 93 IDGILVDLGV 102 (305)
T ss_pred ccEEEEeccC
Confidence 9999987655
No 261
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.98 E-value=0.0091 Score=55.88 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=68.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~V 197 (318)
.++..|++||.|++-+|.. |++. +.+|++||+|+..++.-++.+. ...+++++.+|+.++.... ..-...
T Consensus 29 ~~~~~VlEiGpG~G~lT~~-L~~~---~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~~~~~~~~~ 100 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRE-LLKR---GKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYDLLKNQPLL 100 (262)
T ss_dssp GTTSEEEEESSTTSCCHHH-HHHH---SSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGGHCSSSEEE
T ss_pred CCCCEEEEeCCCCccchhh-Hhcc---cCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHHhhcCCceE
Confidence 5789999999998777765 5543 5999999999988888777655 3588999999999864322 112355
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCC---eEEEEEc
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPG---ALLMLRS 231 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpG---g~lv~r~ 231 (318)
+++.+ +-.--..++..+...-+.| ..+++-.
T Consensus 101 vv~Nl---Py~is~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 101 VVGNL---PYNISSPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp EEEEE---TGTGHHHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred EEEEe---cccchHHHHHHHhhcccccccceEEEEeh
Confidence 55664 2233456777777644443 4455533
No 262
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.97 E-value=0.0098 Score=56.43 Aligned_cols=105 Identities=13% Similarity=0.185 Sum_probs=80.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc----C-------------------------
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS----D------------------------- 170 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~----~------------------------- 170 (318)
..+.|||.=||| +|--+.-+|++ |..+.|.|.|--|+-..+-+... .
T Consensus 55 ~~~~~VLVPGsG-LGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 55 RSKIRVLVPGSG-LGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred CCccEEEEcCCC-cchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 456799999999 78888889973 99999999999997666544331 0
Q ss_pred ---------CCCCCCeEEEEccccccCcCC---CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 171 ---------PDLSTRMFFHTTDIMNVSSAL---KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 171 ---------~gl~~ri~f~~gDa~~l~~~l---~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
.....++....||-.++-... +.||+|.+.-++- .++.=.+.++.|.+.|||||..+=
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-TA~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-TAENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-chHHHHHHHHHHHHHhccCCEEEe
Confidence 122457888889988875554 4899998776663 346678999999999999996643
No 263
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.96 E-value=0.0029 Score=58.98 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=65.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--ccccccCcCCCCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDIMNVSSALKDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa~~l~~~l~~fD~ 196 (318)
.++++||.+|+|++|..++.+|+.+ |++ |+.+|.+++..+.|+++ |...-+.... ..+.++. .-..+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~~-----Ga~~~i~~~~~~~~~~~~~-~~~g~d~ 190 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALSF-----GATALAEPEVLAERQGGLQ-NGRGVDV 190 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHc-----CCcEecCchhhHHHHHHHh-CCCCCCE
Confidence 5788999999999999999999864 876 99999999888887764 2211111100 0111121 1126999
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+-.. | ....++...+.++|||+++.-.
T Consensus 191 vid~~--G-----~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFS--G-----ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECC--C-----ChHHHHHHHHHhcCCCEEEEec
Confidence 88543 2 1235666788999999998765
No 264
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.96 E-value=0.0049 Score=58.26 Aligned_cols=101 Identities=24% Similarity=0.241 Sum_probs=67.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc-------CCCC---------CCCeEEEEccccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS-------DPDL---------STRMFFHTTDIMN 186 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~-------~~gl---------~~ri~f~~gDa~~ 186 (318)
++|..||+|.+|.+......+ .|..|+.+|++++.++.+++.+.+ ...+ ..++++. .|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHH
Confidence 589999999887665443332 488999999999999988765321 0111 1344432 33222
Q ss_pred cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.....|+|+.+..- +.+-|..+++++.+.++++.+|+...
T Consensus 81 ---a~~~aDlVieavpe--~~~~k~~~~~~l~~~~~~~~ii~snt 120 (287)
T PRK08293 81 ---AVKDADLVIEAVPE--DPEIKGDFYEELAKVAPEKTIFATNS 120 (287)
T ss_pred ---HhcCCCEEEEeccC--CHHHHHHHHHHHHhhCCCCCEEEECc
Confidence 23478999977531 34579999999999999888775544
No 265
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.96 E-value=0.009 Score=57.24 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=65.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+||..|+|++|..++.+|+. .|++|++++.+++..+.|+++ |...-+. ..+. ....+|+++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~~-----Ga~~vi~-----~~~~--~~~~~d~~i 228 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALAL-----GAASAGG-----AYDT--PPEPLDAAI 228 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHh-----CCceecc-----cccc--CcccceEEE
Confidence 3678999999999999999999986 489999999999887777653 3321111 1111 113588777
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....++ ..+....+.+++||++++-.
T Consensus 229 ~~~~~~-------~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPAG-------GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCcH-------HHHHHHHHhhCCCcEEEEEe
Confidence 554321 35777789999999998754
No 266
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.93 E-value=0.00031 Score=61.38 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=64.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE-------------------
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH------------------- 180 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~------------------- 180 (318)
.+|.+|+.+|.|..|..|..+++.+ |++|+.+|..++..+..+.+... .+...
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAY------FIEVDYEDHLERKDFDKADYYEHP 89 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTE------ESEETTTTTTTSB-CCHHHCHHHC
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCc------eEEEcccccccccccchhhhhHHH
Confidence 6789999999999999999999975 99999999999887776654432 12221
Q ss_pred EccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 181 TTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 181 ~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
...-..+......+|+|+..++.+-...+ .-+-++..+.|+||.+++=
T Consensus 90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P-~lvt~~~~~~m~~gsvIvD 137 (168)
T PF01262_consen 90 ESYESNFAEFIAPADIVIGNGLYWGKRAP-RLVTEEMVKSMKPGSVIVD 137 (168)
T ss_dssp CHHHHHHHHHHHH-SEEEEHHHBTTSS----SBEHHHHHTSSTTEEEEE
T ss_pred HHhHHHHHHHHhhCcEEeeecccCCCCCC-EEEEhHHhhccCCCceEEE
Confidence 00001111222367999988876433333 3366677788998776643
No 267
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.87 E-value=0.0044 Score=58.55 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=66.6
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-C--------CCCeEEEEcccccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-L--------STRMFFHTTDIMNV 187 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l--------~~ri~f~~gDa~~l 187 (318)
++|..||+|.+|.+......+ .|..|+.+|+|++.++.+++..... .| + ..++++. .|..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-- 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLK-- 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHH--
Confidence 589999999887764333222 4889999999999999886532210 01 1 0123332 2222
Q ss_pred CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
......|+|+.+... +..-|..++.++.+.++||.+++...
T Consensus 77 -~~~~~aD~Vi~avpe--~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 77 -AAVADADLVIEAVPE--KLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred -HhhcCCCEEEEeccC--CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 233578999976532 44568899999999999998876654
No 268
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.87 E-value=0.0013 Score=58.65 Aligned_cols=102 Identities=30% Similarity=0.340 Sum_probs=60.5
Q ss_pred CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC---------CCCeEEEEccccccCcC
Q 021008 123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL---------STRMFFHTTDIMNVSSA 190 (318)
Q Consensus 123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl---------~~ri~f~~gDa~~l~~~ 190 (318)
+||..||.|-.|++. .++|+ .|.+|+|+|+|++.++.-++-..- ..|+ ..|.+|. .|..+ .
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~---~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~---a 73 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE---KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEE---A 73 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH---TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHH---H
T ss_pred CEEEEECCCcchHHHHHHHHh---CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhh---h
Confidence 589999999998765 55665 499999999999988776522110 0111 2445543 22222 1
Q ss_pred CCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 191 LKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 191 l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....|++|+.---+. +...-.++++.+.+.+++|.++++++
T Consensus 74 i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 74 IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 235788886542211 22335678999999999999999998
No 269
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.84 E-value=0.0038 Score=59.16 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=60.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.++++||.+|+|++|+.++.+|+.+ |++ |..+|.+++..+.|.+.. . + |..+. ....||+||
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a~~~~-----~------i--~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGATGYE-----V------L--DPEKD--PRRDYRAIY 205 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhhhhcc-----c------c--Chhhc--cCCCCCEEE
Confidence 4578999999999999999999864 776 677899887766654321 0 0 11110 113699988
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-.. | ....++...+.|+|||++++-.
T Consensus 206 d~~--G-----~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 206 DAS--G-----DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred ECC--C-----CHHHHHHHHHhhhcCcEEEEEe
Confidence 443 2 1235667778999999998754
No 270
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.79 E-value=0.0045 Score=58.83 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=65.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc---ccccCcCCCCc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD---IMNVSSALKDY 194 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD---a~~l~~~l~~f 194 (318)
..++++||.+|+|++|..++.+|+. .|++ |+++|.+++..+.++++ |...-+.....+ +.++. ....|
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~~-----ga~~~i~~~~~~~~~~~~~~-~~~~~ 232 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARA--LGAEDVIGVDPSPERLELAKAL-----GADFVINSGQDDVQEIRELT-SGAGA 232 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHh-----CCCEEEcCCcchHHHHHHHh-CCCCC
Confidence 3678999999999999999999986 4888 99999999888877654 321111111111 11121 12369
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+-..- ....+....+.|++||++++-.
T Consensus 233 d~vid~~g-------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 233 DVAIECSG-------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CEEEECCC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 99985431 1224556678999999998754
No 271
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.78 E-value=0.015 Score=55.05 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=66.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CCC-C--------CCeEEEEccccc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PDL-S--------TRMFFHTTDIMN 186 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~gl-~--------~ri~f~~gDa~~ 186 (318)
-++|.+||+|.+|.+....... .|..|+.+|++++.++.+.+.+... .|. . .++++. .|.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 78 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-- 78 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH--
Confidence 3689999999988765443332 4889999999999998865432210 111 1 234442 232
Q ss_pred cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
......|+|+.+... +..-|..+++++...++|+.+|+..
T Consensus 79 --~~~~~aD~Vieavpe--~~~~k~~~~~~l~~~~~~~~ii~s~ 118 (292)
T PRK07530 79 --EDLADCDLVIEAATE--DETVKRKIFAQLCPVLKPEAILATN 118 (292)
T ss_pred --HHhcCCCEEEEcCcC--CHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 134578999977522 3456889999999999999887643
No 272
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.77 E-value=0.0076 Score=57.30 Aligned_cols=123 Identities=13% Similarity=0.173 Sum_probs=74.2
Q ss_pred hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHH-----hCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-CeEE
Q 021008 106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAI-----NHLTTTCFDNYDIDPSANSKALSLVSSDPDLST-RMFF 179 (318)
Q Consensus 106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~-----~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f 179 (318)
++++-...+. ..++.+|+|-.||.+++-.-.+-. .......+.|+|+|+.++..|+-...- .|... ...+
T Consensus 34 i~~l~~~~~~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i 109 (311)
T PF02384_consen 34 IVDLMVKLLN---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHT---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEE
T ss_pred HHHHHHhhhh---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hccccccccc
Confidence 4555444442 366779999999987665433321 012689999999999999999866543 34433 3568
Q ss_pred EEccccccCcC--CCCccEEEeccccCCC--------------------hhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 180 HTTDIMNVSSA--LKDYEVVFLAALVGMD--------------------KDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 180 ~~gDa~~l~~~--l~~fD~V~~aalvgm~--------------------~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
..+|....+.. ...||+|+..--.+.. ...-..++.++.+.|++||++++--+
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 89998765443 2489998732111100 01113588999999999998766543
No 273
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.73 E-value=0.0051 Score=58.83 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=61.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..++||+.||.|..|.+.+..++++ |++|+.+|.+++..+.++. .|. +++ +..++.....++|+||.
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~-----~G~----~~~--~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITE-----MGL----SPF--HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-----cCC----eee--cHHHHHHHhCCCCEEEE
Confidence 3689999999999999988888764 8999999999887655543 232 222 11233334458999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
.. +. .-+-++..+.|+||++++
T Consensus 217 t~----p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 217 TI----PA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred CC----Ch---hhhhHHHHHcCCCCcEEE
Confidence 64 11 123355667899988765
No 274
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.62 E-value=0.013 Score=55.82 Aligned_cols=92 Identities=21% Similarity=0.195 Sum_probs=59.3
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL 202 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal 202 (318)
++|+.||+|.+|.+......+.....+|+++|.+++..+.+++ .|.... ...+.. ......|+|+++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----~g~~~~---~~~~~~---~~~~~aDvViiav- 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----LGLGDR---VTTSAA---EAVKGADLVILCV- 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----CCCCce---ecCCHH---HHhcCCCEEEECC-
Confidence 6899999998887654433332112489999999988776653 232111 111211 2234789999886
Q ss_pred cCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 203 VGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 203 vgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+......+++.+...++||+.++.
T Consensus 75 ---p~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 ---PVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ---CHHHHHHHHHHHHhhCCCCCEEEe
Confidence 334556788888888999886643
No 275
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.61 E-value=0.0039 Score=59.34 Aligned_cols=96 Identities=10% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+.-++++|||-+=++.. .|.+.++|.|++...+.-|++. | ......+|+..+|.....||..+.
T Consensus 44 ~~gsv~~d~gCGngky~~~------~p~~~~ig~D~c~~l~~~ak~~-----~---~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV------NPLCLIIGCDLCTGLLGGAKRS-----G---GDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CCcceeeecccCCcccCcC------CCcceeeecchhhhhccccccC-----C---CceeehhhhhcCCCCCCccccchh
Confidence 5689999999997533321 2788999999999887776531 1 115677999999988889998775
Q ss_pred cccc-CC-ChhHHHHHHHHHHHhccCCeEEEE
Q 021008 200 AALV-GM-DKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 200 aalv-gm-~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
-|.+ ++ ....+.++++++.+.++|||...+
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 4434 33 568889999999999999997544
No 276
>PLN02740 Alcohol dehydrogenase-like
Probab=96.57 E-value=0.0088 Score=58.40 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=64.7
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--ccc----cccCcCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDI----MNVSSAL 191 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa----~~l~~~l 191 (318)
..++++||.+|+|++|+.++.+|+. .|+ +|+++|.+++..+.++++ |...-+.... .|. .++..
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~~-----Ga~~~i~~~~~~~~~~~~v~~~~~-- 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKEM-----GITDFINPKDSDKPVHERIREMTG-- 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHc-----CCcEEEecccccchHHHHHHHHhC--
Confidence 3678999999999999999999986 488 699999999988888653 3322121111 011 11211
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~ 231 (318)
+.+|+|+-.. | ....+....+.+++| |++++-.
T Consensus 267 ~g~dvvid~~--G-----~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECA--G-----NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECC--C-----ChHHHHHHHHhhhcCCCEEEEEc
Confidence 1699888543 2 123566666788897 8887655
No 277
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.56 E-value=0.0051 Score=59.73 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=65.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCcC-CCCcc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSSA-LKDYE 195 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~~-l~~fD 195 (318)
..++++||..|+|++|..++.+|+. .|+ .|+++|.+++..+.++++ |...-+.....|.. .+... .+.+|
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~~-----Ga~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVA--AGASQVVAVDLNEDKLALAREL-----GATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHHc-----CCceEeCCCchhHHHHHHHHhCCCCC
Confidence 3678999999999999999999986 488 699999999988887653 32111111111111 11100 12689
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+-.. | ....+....+.+++||+++.-.
T Consensus 262 ~vid~~--G-----~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 262 YAFEMA--G-----SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEECC--C-----ChHHHHHHHHHHhcCCEEEEEc
Confidence 888443 2 1235666678999999988755
No 278
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.56 E-value=0.0074 Score=58.00 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=63.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc---cccc-cC--cCCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT---DIMN-VS--SALK 192 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g---Da~~-l~--~~l~ 192 (318)
..++.+|+..|+|++|..++.+|+.+ |++|+++|.+++..+.++++ |...-+..... |..+ +. ....
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~-----Ga~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGF-----GADLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh-----CCceEecCccccHHHHHHHHHhhcccC
Confidence 36789999999999999999999864 88999999999988877653 32111111111 1111 10 0112
Q ss_pred Ccc----EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 193 DYE----VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 193 ~fD----~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+| +||-.. | ....+....+.|++||++++-.
T Consensus 237 g~d~~~d~v~d~~--g-----~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 237 GLRSTGWKIFECS--G-----SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCcCEEEECC--C-----ChHHHHHHHHHHhcCCeEEEEC
Confidence 454 565332 2 1235556678999999998765
No 279
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.54 E-value=0.009 Score=58.45 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=70.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-c----cccCcCCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-I----MNVSSALKD 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-a----~~l~~~l~~ 193 (318)
.++.+||.+|+|++|..++.+|+.+ |. +|+++|.+++..+.++++.. . .-+.+...+ . .++. ....
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~~----~-~vi~~~~~~~~~~~l~~~~-~~~~ 254 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHLG----A-ETINFEEVDDVVEALRELT-GGRG 254 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCC----c-EEEcCCcchHHHHHHHHHc-CCCC
Confidence 5778999999999999999999874 76 69999999999888877521 1 112222221 1 1121 1126
Q ss_pred ccEEEeccccC--------------CChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 194 YEVVFLAALVG--------------MDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 194 fD~V~~aalvg--------------m~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+|+|+-...-. .+..++...+.++.+.|+|||+++.-..
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 89887532100 0112346688999999999999988764
No 280
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.52 E-value=0.0072 Score=57.50 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=63.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC----------CCCeEEEEccccccCcCC
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL----------STRMFFHTTDIMNVSSAL 191 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl----------~~ri~f~~gDa~~l~~~l 191 (318)
-++|.+||+|.+|.+......+ .|.+|+.+|.+++.++.+++......|. ..++++. .|..+ ..
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~---~~ 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAA---AV 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHH---Hh
Confidence 3689999999888765443332 4889999999999998887642210111 0123332 22222 23
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
...|+|+++--. +...|..++.++.+.++++.+++.
T Consensus 78 ~~aDlVi~av~~--~~~~~~~v~~~l~~~~~~~~ii~s 113 (311)
T PRK06130 78 SGADLVIEAVPE--KLELKRDVFARLDGLCDPDTIFAT 113 (311)
T ss_pred ccCCEEEEeccC--cHHHHHHHHHHHHHhCCCCcEEEE
Confidence 478999987521 224588899999888877766543
No 281
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.48 E-value=0.026 Score=53.45 Aligned_cols=99 Identities=25% Similarity=0.317 Sum_probs=66.0
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCCC-C--------CCeEEEEccccc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPDL-S--------TRMFFHTTDIMN 186 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~gl-~--------~ri~f~~gDa~~ 186 (318)
-++|.+||+|.+|..-...... .|.+|+.+|.+++.++.+++.+.+ ..|. . .++.+. .+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-- 78 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL-- 78 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH--
Confidence 3689999999887665443332 488999999999998876553221 0121 0 123332 222
Q ss_pred cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
......|+|+.+..- +...|..++.++...++|+.+|+.
T Consensus 79 --~~~~~aD~Vieav~e--~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 79 --EELRDADFIIEAIVE--SEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred --HHhCCCCEEEEcCcc--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 123478999977522 467899999999999999987764
No 282
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.41 E-value=0.009 Score=59.23 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=78.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC-CeEEEEccccccCc-CCCCccEEE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST-RMFFHTTDIMNVSS-ALKDYEVVF 198 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~-ri~f~~gDa~~l~~-~l~~fD~V~ 198 (318)
.+-+|||.=|| -|+=++.+|++......|+.-|+|+++++..+++++. -++.. ++++.+.|+..+.. ....||+|=
T Consensus 49 ~~~~~lDalaa-sGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~-N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAA-SGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL-NGLEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-T-TSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH-CT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CCceEEecccc-ccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh-ccccCceEEEehhhHHHHhhhccccCCEEE
Confidence 45699999888 5899999998742235899999999999999999987 78877 89999999987643 234899999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
++-+ .....+++...+.++.||.|.+...+
T Consensus 127 lDPf-----GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 127 LDPF-----GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp E--S-----S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred eCCC-----CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 9975 35577999999999999999997743
No 283
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.41 E-value=0.0069 Score=58.42 Aligned_cols=97 Identities=18% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~f 194 (318)
.++++||..|+|++|..++.+|+. .|+. |+++|.+++..+.++++ |...-+.....|.. ++. .-..+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~~-----Ga~~~i~~~~~~~~~~i~~~~-~~~g~ 246 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWAREF-----GATHTVNSSGTDPVEAIRALT-GGFGA 246 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHc-----CCceEEcCCCcCHHHHHHHHh-CCCCC
Confidence 678999999999999999999986 4884 99999999888887643 32111111111111 111 11268
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+-.. |- ...++...+.+++||++++-.
T Consensus 247 d~vid~~--g~-----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 247 DVVIDAV--GR-----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CEEEECC--CC-----HHHHHHHHHHhccCCEEEEEC
Confidence 9888433 21 234566678999999998755
No 284
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.40 E-value=0.06 Score=49.83 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=67.5
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCcc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYE 195 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD 195 (318)
..++.+||.+|.. .|.|.-.++.--.+...|.+|+.++....---.++++ ..+|-=+.+|+..-. .-....|
T Consensus 71 ik~gskVLYLGAa-sGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----R~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 71 IKPGSKVLYLGAA-SGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----RPNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp --TT-EEEEETTT-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----STTEEEEES-TTSGGGGTTTS--EE
T ss_pred CCCCCEEEEeccc-CCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----CCceeeeeccCCChHHhhccccccc
Confidence 4788999999997 5788777776545688999999999554433333333 367777889998521 1223789
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
+||.+-- ++.+-.=+..+....||+||.+++-
T Consensus 146 vI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 146 VIFQDVA---QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCC---ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 9997742 2234344555666799999988764
No 285
>PLN02494 adenosylhomocysteinase
Probab=96.40 E-value=0.023 Score=57.82 Aligned_cols=146 Identities=10% Similarity=0.083 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh---hcC------CCCcccccCCcChhhHHHhhHHHHHHHhhcc--cCCCCEEEE
Q 021008 59 QDIRSKLIRLCGEAEGLLESHFSSIL---ASF------ENPIANLNIFPYYSNYIKLSQLEFNILTQHC--SRFPTKIAF 127 (318)
Q Consensus 59 ~~l~~~l~~l~~~ae~~lE~~~A~~l---~~~------~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~--~~~~~rVL~ 127 (318)
.++.+.++=.+-+.+.-.-..++..- +.. +.+.+++ |||-.-.-+.-++.+.+.. ...+++|+.
T Consensus 185 ~~~~~~i~G~~EeTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~-----fDn~yGtgqS~~d~i~r~t~i~LaGKtVvV 259 (477)
T PLN02494 185 HKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSK-----FDNLYGCRHSLPDGLMRATDVMIAGKVAVI 259 (477)
T ss_pred hHHHHhhcCCcccccHHHHHHHHHHHCCCCCCCEEEEcChhhhhh-----hhccccccccHHHHHHHhcCCccCCCEEEE
Confidence 44566666666666555555554222 111 3333332 3332222222234444332 257899999
Q ss_pred EccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCCh
Q 021008 128 IGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMDK 207 (318)
Q Consensus 128 IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~~ 207 (318)
+|.|++|......++.+ |++|+.+|+|+.....|.. .|.. +. +..+ .+...|+|+...
T Consensus 260 iGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~-----~G~~----vv--~leE---al~~ADVVI~tT------ 317 (477)
T PLN02494 260 CGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM-----EGYQ----VL--TLED---VVSEADIFVTTT------ 317 (477)
T ss_pred ECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh-----cCCe----ec--cHHH---HHhhCCEEEECC------
Confidence 99999999988888754 9999999999965444422 2221 11 2222 234689998643
Q ss_pred hHHHHHHHHHHHhccCCeEEEEEc
Q 021008 208 DEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 208 ~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..+.-+..+..+.|||||+|+--.
T Consensus 318 Gt~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 318 GNKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred CCccchHHHHHhcCCCCCEEEEcC
Confidence 233334466678999999987654
No 286
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0051 Score=62.66 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=85.5
Q ss_pred CcChhhHHHhhHHHHHHHhhccc-CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCC
Q 021008 97 FPYYSNYIKLSQLEFNILTQHCS-RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLST 175 (318)
Q Consensus 97 fpY~~ny~~L~~~E~~~l~~~~~-~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ 175 (318)
.-+|++--...+.-|..++.++. +.++-++||=||+ |...+.+|+ +-.+|+||+++|++++-|++++.. -|. .
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGT-G~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~-Ngi-s 431 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGT-GTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQI-NGI-S 431 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecC-Cceehhhhc---cccceeeeecChhhcchhhhcchh-cCc-c
Confidence 45666666666666777777765 6678899999995 777788987 357999999999999999999998 787 7
Q ss_pred CeEEEEccccccCcCC-C-Ccc----EEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 176 RMFFHTTDIMNVSSAL-K-DYE----VVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 176 ri~f~~gDa~~l~~~l-~-~fD----~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.+|++|-+.++-..+ + .+| +++++= =-|+ -.+++..+.+.-+|- ++++.+
T Consensus 432 Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl----h~~~ik~l~~~~~~~-rlvyvS 489 (534)
T KOG2187|consen 432 NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL----HMKVIKALRAYKNPR-RLVYVS 489 (534)
T ss_pred ceeeeecchhhccchhcccCCCCCceEEEECCCcccc----cHHHHHHHHhccCcc-ceEEEE
Confidence 8999999877753322 2 233 344432 1133 245676676554443 444444
No 287
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.39 E-value=0.013 Score=58.72 Aligned_cols=146 Identities=15% Similarity=0.032 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHh---hcC------CCCcccccCCcChhhHHHhhHHHHHHHhhcc--cCCCCEEE
Q 021008 58 VQDIRSKLIRLCGEAEGLLESHFSSIL---ASF------ENPIANLNIFPYYSNYIKLSQLEFNILTQHC--SRFPTKIA 126 (318)
Q Consensus 58 ~~~l~~~l~~l~~~ae~~lE~~~A~~l---~~~------~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~--~~~~~rVL 126 (318)
-+++.+.++-.+-+.+.-..++++..- +.. +.+.+++....|- .-+.-++.+.+.. ...+++|+
T Consensus 125 ~~~~~~~~~G~~EeTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn~yg-----~g~s~~~~i~r~t~~~l~Gk~Vv 199 (406)
T TIGR00936 125 RPELLEKIIGGSEETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYG-----TGQSTIDGILRATNLLIAGKTVV 199 (406)
T ss_pred hhhhhhccEEEeecchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhcccc-----cchhHHHHHHHhcCCCCCcCEEE
Confidence 344444455455555555555554321 121 3444444444442 2222223333321 25789999
Q ss_pred EEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCCC
Q 021008 127 FIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGMD 206 (318)
Q Consensus 127 ~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm~ 206 (318)
.+|+|++|......++. .|++|+.+|+||.....|. . .|. .+. +..+ .....|+|+.+. |
T Consensus 200 ViG~G~IG~~vA~~ak~--~Ga~ViV~d~dp~r~~~A~----~-~G~----~v~--~lee---al~~aDVVItaT--G-- 259 (406)
T TIGR00936 200 VAGYGWCGKGIAMRARG--MGARVIVTEVDPIRALEAA----M-DGF----RVM--TMEE---AAKIGDIFITAT--G-- 259 (406)
T ss_pred EECCCHHHHHHHHHHhh--CcCEEEEEeCChhhHHHHH----h-cCC----EeC--CHHH---HHhcCCEEEECC--C--
Confidence 99999999999888875 4999999999996543332 2 222 221 2222 224679987643 1
Q ss_pred hhHHHHHHH-HHHHhccCCeEEEEEc
Q 021008 207 KDEKIRVID-HLAKYMAPGALLMLRS 231 (318)
Q Consensus 207 ~~~k~~vl~-~l~r~LkpGg~lv~r~ 231 (318)
. ..++. +....||+|++++.-.
T Consensus 260 --~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 260 --N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred --C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 2 33444 4678999999886644
No 288
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.37 E-value=0.014 Score=56.65 Aligned_cols=97 Identities=9% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++++||..|+|++|+.++.+|+.+ |++|+.++.+++.... ..++ .|.. -.+...+...+....+.+|+|+-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~---~~~~-~Ga~--~vi~~~~~~~~~~~~~~~D~vid 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDE---AINR-LGAD--SFLVSTDPEKMKAAIGTMDYIID 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhh---HHHh-CCCc--EEEcCCCHHHHHhhcCCCCEEEE
Confidence 5789999999999999999999864 8999999888754322 2223 3431 11111111111111135899884
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.. | -...+++..+.+++||+++.-.
T Consensus 254 ~~--g-----~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 254 TV--S-----AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CC--C-----CHHHHHHHHHHhcCCcEEEEeC
Confidence 33 2 1225666789999999998654
No 289
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.34 E-value=0.02 Score=58.82 Aligned_cols=75 Identities=19% Similarity=0.084 Sum_probs=50.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCC-----C--CcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc-----C
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHL-----T--TTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV-----S 188 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~-----~--ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l-----~ 188 (318)
.+.+|+|.|||.+++..- ++++.. . ...++|+|||+.++..|+.++.. .+ ...+.++.+|...- .
T Consensus 31 ~~~~ilDP~cGsG~fl~~-~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~-~~-~~~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAA-LLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE-FA-LLEINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHH-HHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh-cC-CCCceeeecccccccccccc
Confidence 457999999998766654 333221 1 25799999999999999988776 44 23456666664421 1
Q ss_pred cCCCCccEEE
Q 021008 189 SALKDYEVVF 198 (318)
Q Consensus 189 ~~l~~fD~V~ 198 (318)
...+.||+|+
T Consensus 108 ~~~~~fD~II 117 (524)
T TIGR02987 108 SYLDLFDIVI 117 (524)
T ss_pred cccCcccEEE
Confidence 1224799987
No 290
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.33 E-value=0.0097 Score=56.92 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=63.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc---ccccCcCCCCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD---IMNVSSALKDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD---a~~l~~~l~~fD 195 (318)
.++++||..|+|++|..++.+|+.+ |++ |+++|.+++..+.++++ |...-+.....+ +.++. .-..+|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-----Ga~~~i~~~~~~~~~~~~~~-~~~~~d 230 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSL-----GAMQTFNSREMSAPQIQSVL-RELRFD 230 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHc-----CCceEecCcccCHHHHHHHh-cCCCCC
Confidence 6789999999999999999999864 886 79999999888777543 321111111111 11111 112588
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+++++ +| . ...+.+..+.|++||++++-.
T Consensus 231 ~~v~d~-~G----~-~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 231 QLILET-AG----V-PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred eEEEEC-CC----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 444454 22 1 346677789999999998764
No 291
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.31 E-value=0.0026 Score=64.69 Aligned_cols=117 Identities=11% Similarity=0.143 Sum_probs=69.7
Q ss_pred hhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEE---eCChHHHHHHHHHhhcCCCCCCCe
Q 021008 101 SNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNY---DIDPSANSKALSLVSSDPDLSTRM 177 (318)
Q Consensus 101 ~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gv---Did~~ai~~Ar~~~~~~~gl~~ri 177 (318)
+.|+.-+..-..... ....-+.+||||||...+.+.++.+ +..+..+ |..+..++.|- + -|+..-+
T Consensus 99 ~~Yid~i~~~~~~~~--~~g~iR~~LDvGcG~aSF~a~l~~r----~V~t~s~a~~d~~~~qvqfal----e-RGvpa~~ 167 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIK--WGGGIRTALDVGCGVASFGAYLLER----NVTTMSFAPNDEHEAQVQFAL----E-RGVPAMI 167 (506)
T ss_pred HHHHHHHHHHhhccc--cCCceEEEEeccceeehhHHHHhhC----CceEEEcccccCCchhhhhhh----h-cCcchhh
Confidence 466655444333211 1234478999999988888765543 4443333 33333444442 2 2332222
Q ss_pred EEEEccccccCcCCCCccEEEecc-ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 178 FFHTTDIMNVSSALKDYEVVFLAA-LVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 178 ~f~~gDa~~l~~~l~~fD~V~~aa-lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
... -...||+..+.||+|..+. ++++... ..-+|-++-|+|||||.+++..
T Consensus 168 ~~~--~s~rLPfp~~~fDmvHcsrc~i~W~~~-~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 168 GVL--GSQRLPFPSNAFDMVHCSRCLIPWHPN-DGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred hhh--ccccccCCccchhhhhcccccccchhc-ccceeehhhhhhccCceEEecC
Confidence 211 1135888888999998664 4555432 2568899999999999998866
No 292
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.24 E-value=0.02 Score=55.44 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=59.9
Q ss_pred hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc
Q 021008 106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM 185 (318)
Q Consensus 106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~ 185 (318)
|.+.-.+.|. +.++...+|-=-|.+|.|...|.+ +++++++|+|.||+|++.|++.... .++|+.|+.++-.
T Consensus 8 ll~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~--~~~~~li~~DrD~~a~~~a~~~l~~---~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 8 LLKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEK--LPNGRLIGIDRDPEALERAKERLKK---FDDRFIFIHGNFS 79 (310)
T ss_dssp THHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCC---CCTTEEEEES-GG
T ss_pred cHHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHhh---ccceEEEEeccHH
Confidence 4444455443 467778899766667899877754 4779999999999999999988776 4799999999987
Q ss_pred ccCc------CCCCccEEEecccc
Q 021008 186 NVSS------ALKDYEVVFLAALV 203 (318)
Q Consensus 186 ~l~~------~l~~fD~V~~aalv 203 (318)
++.. ....+|.|+++-.|
T Consensus 80 ~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 80 NLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp GHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHHccCCCccCEEEEcccc
Confidence 7531 33478988877644
No 293
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.23 E-value=0.019 Score=57.80 Aligned_cols=147 Identities=12% Similarity=0.087 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHh---hcC------CCCcccccCCcChhhHHHhhHHHHHHHhhcc--cCCCCEE
Q 021008 57 SVQDIRSKLIRLCGEAEGLLESHFSSIL---ASF------ENPIANLNIFPYYSNYIKLSQLEFNILTQHC--SRFPTKI 125 (318)
Q Consensus 57 ~~~~l~~~l~~l~~~ae~~lE~~~A~~l---~~~------~~P~~~L~~fpY~~ny~~L~~~E~~~l~~~~--~~~~~rV 125 (318)
.-+++.+.++-.+-+.+.-..+.++..- +.. +.+... .|+|-.-.-+--+..+.+.. ...+++|
T Consensus 141 ~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~-----~~dn~~gt~~s~~~ai~rat~~~l~Gk~V 215 (425)
T PRK05476 141 ERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVTKS-----KFDNRYGTGESLLDGIKRATNVLIAGKVV 215 (425)
T ss_pred HhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCcccCc-----cccccHHHHhhhHHHHHHhccCCCCCCEE
Confidence 3344445555555555555555554321 111 223332 33433333333344333331 2478999
Q ss_pred EEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccccCC
Q 021008 126 AFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALVGM 205 (318)
Q Consensus 126 L~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalvgm 205 (318)
+.+|+|++|......++. -|++|+.+|+|+.....|. . .|. ++ .+..++ ...+|+|+.+. |
T Consensus 216 lViG~G~IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~----~-~G~----~v--~~l~ea---l~~aDVVI~aT--G- 276 (425)
T PRK05476 216 VVAGYGDVGKGCAQRLRG--LGARVIVTEVDPICALQAA----M-DGF----RV--MTMEEA---AELGDIFVTAT--G- 276 (425)
T ss_pred EEECCCHHHHHHHHHHHh--CCCEEEEEcCCchhhHHHH----h-cCC----Ee--cCHHHH---HhCCCEEEECC--C-
Confidence 999999999988888875 4999999999996544332 1 222 11 122222 24789998654 2
Q ss_pred ChhHHHHHHH-HHHHhccCCeEEEEEc
Q 021008 206 DKDEKIRVID-HLAKYMAPGALLMLRS 231 (318)
Q Consensus 206 ~~~~k~~vl~-~l~r~LkpGg~lv~r~ 231 (318)
.+ .++. +..+.||+|++++.-.
T Consensus 277 ---~~-~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 277 ---NK-DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ---CH-HHHHHHHHhcCCCCCEEEEcC
Confidence 22 3554 6778999999886644
No 294
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.20 E-value=0.039 Score=51.96 Aligned_cols=86 Identities=22% Similarity=0.209 Sum_probs=57.4
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecccc
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALV 203 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalv 203 (318)
+|..||+|.+|.+.....++ .|.+|+++|.+++..+.+.+. |... ....+. ......|+|+++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~~~~~~~a~~~-----g~~~---~~~~~~----~~~~~aDlVilav-- 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRRESTCERAIER-----GLVD---EASTDL----SLLKDCDLVILAL-- 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHC-----CCcc---cccCCH----hHhcCCCEEEEcC--
Confidence 79999999887764333332 378999999999888776542 2211 111111 1234789999886
Q ss_pred CCChhHHHHHHHHHHHhccCCeEE
Q 021008 204 GMDKDEKIRVIDHLAKYMAPGALL 227 (318)
Q Consensus 204 gm~~~~k~~vl~~l~r~LkpGg~l 227 (318)
+...-.++++++...++|+.++
T Consensus 66 --p~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 66 --PIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred --CHHHHHHHHHHHHHhCCCCcEE
Confidence 4445567888998888887655
No 295
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.16 E-value=0.023 Score=55.29 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=64.5
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--cc----ccccCcCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TD----IMNVSSAL 191 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gD----a~~l~~~l 191 (318)
..++++||..|+|++|..++.+|+.+ |+ +|+++|.+++..+.++++ |...-+.... .+ +.++..
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~~-----Ga~~~i~~~~~~~~~~~~v~~~~~-- 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMA--KASRIIAIDINPAKFELAKKL-----GATDCVNPNDYDKPIQEVIVEITD-- 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh-----CCCeEEcccccchhHHHHHHHHhC--
Confidence 36789999999999999999999864 87 799999999988887653 3211111111 01 111211
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~ 231 (318)
+.+|+|+-.. | ....+....+.+++| |+++.-.
T Consensus 254 ~g~d~vid~~--G-----~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 GGVDYSFECI--G-----NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCEEEECC--C-----CHHHHHHHHHHhhcCCCeEEEEe
Confidence 2689888543 2 123566667889886 8887654
No 296
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.15 E-value=0.0078 Score=56.07 Aligned_cols=103 Identities=10% Similarity=-0.015 Sum_probs=75.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..-..+++|||| +|.-+..+-.+ .=.+++-+|-|..+++.++..- +-+-.+.+.++|-..+++..++||+|+.
T Consensus 71 k~fp~a~diGcs-~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~q----dp~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 71 KSFPTAFDIGCS-LGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQ----DPSIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hhCcceeecccc-hhhhhHHHHhc--chhheeeeecchHHHHHhhccC----CCceEEEEEecchhcccccccchhhhhh
Confidence 445689999998 56655555432 1246899999999999987532 2345688889999999988889999985
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
+--.+|. .+-...+..+...|||+|.++-.
T Consensus 144 SlslHW~-NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWT-NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhh-ccCchHHHHHHHhcCCCccchhH
Confidence 5333432 34456788899999999998753
No 297
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.13 E-value=0.047 Score=56.15 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=69.2
Q ss_pred CCCCEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhc------CCC-C--------CCCeEEEEcc
Q 021008 120 RFPTKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSS------DPD-L--------STRMFFHTTD 183 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~------~~g-l--------~~ri~f~~gD 183 (318)
.+-++|.+||+|.+|..-. .+|+ .|..|+.+|+++++++.+++.+++ ..| + -.|+++. .|
T Consensus 3 ~~~~kV~VIGaG~MG~gIA~~la~---aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~ 78 (503)
T TIGR02279 3 INVVTVAVIGAGAMGAGIAQVAAS---AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TD 78 (503)
T ss_pred CCccEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CC
Confidence 4557899999998775543 3343 489999999999999987543221 012 1 1244443 23
Q ss_pred ccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 184 IMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 184 a~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.. +..+.|+|+.+..- +.+-|..++.++.+.++|+.+|....
T Consensus 79 ~~----~l~~aDlVIEav~E--~~~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 79 LH----ALADAGLVIEAIVE--NLEVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred HH----HhCCCCEEEEcCcC--cHHHHHHHHHHHHhhCCCCeEEEECC
Confidence 22 33478999976432 56789999999999999988876554
No 298
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.10 E-value=0.063 Score=43.12 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=60.9
Q ss_pred EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEEec
Q 021008 125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVFLA 200 (318)
Q Consensus 125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~~a 200 (318)
|+.+|+|.+|.......++ .+..|+.+|.|++.++.+++ .| +.++.||+.+.. ....+.|.|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~-----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELRE-----EG----VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHH-----TT----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHh-----cc----cccccccchhhhHHhhcCccccCEEEEc
Confidence 6789998765554333332 24599999999988777653 22 679999999732 233478877765
Q ss_pred cccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
. +.....-.+...++.+.|...++++..
T Consensus 70 ~----~~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 T----DDDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp S----SSHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred c----CCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 4 223444455566688899999888764
No 299
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.035 Score=52.91 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=63.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
-.+|..||.|-+|.+-....++......|+|+|.+.+..+.|.. .|+.+.. .+... .......|+|+++-
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-----lgv~d~~----~~~~~-~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-----LGVIDEL----TVAGL-AEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-----cCccccc----ccchh-hhhcccCCEEEEec
Confidence 36899999999888765555544345667888888887777754 3332221 11110 12334689999987
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+...-.++++++.+.|+||..|.
T Consensus 73 ----Pi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 73 ----PIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ----cHHHHHHHHHHhcccCCCCCEEE
Confidence 55778899999999999987763
No 300
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=96.08 E-value=0.024 Score=55.56 Aligned_cols=96 Identities=8% Similarity=0.030 Sum_probs=61.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.++++|+..|+|++|..++.+|+.+ |++|+.+|.+++. .+.++ + .|...-+.. .+...+....+.+|+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a~----~-lGa~~~i~~--~~~~~v~~~~~~~D~vi 247 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAID----R-LGADSFLVT--TDSQKMKEAVGTMDFII 247 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHHH----h-CCCcEEEcC--cCHHHHHHhhCCCcEEE
Confidence 4689999999999999999999864 8999999988653 33433 3 443111111 11111111113589888
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-.. | ....+....+.+++||+++.-.
T Consensus 248 d~~--G-----~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 248 DTV--S-----AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ECC--C-----cHHHHHHHHHhhcCCCEEEEEc
Confidence 543 2 1235666778999999998754
No 301
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=96.02 E-value=0.057 Score=53.36 Aligned_cols=102 Identities=17% Similarity=0.281 Sum_probs=64.9
Q ss_pred CCCCEEEEEc-cCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCC--CCCeEEEE----cccc----cc
Q 021008 120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDL--STRMFFHT----TDIM----NV 187 (318)
Q Consensus 120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl--~~ri~f~~----gDa~----~l 187 (318)
.++.+|+.+| +|++|+.++.+|+...-|+ +|+++|.+++..+.|+++... .+. +....++. .|.. ++
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~-~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPP-EAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccc-cccccCceEEEECCCccccHHHHHHHH
Confidence 5678999998 7999999999998642233 799999999999999886332 100 11111221 1111 11
Q ss_pred CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
. .-..||+|+... | ....+....+.++++|.+++-
T Consensus 253 t-~g~g~D~vid~~--g-----~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 T-GGQGFDDVFVFV--P-----VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred h-CCCCCCEEEEcC--C-----CHHHHHHHHHHhccCCeEEEE
Confidence 1 122699888643 1 124666777899988876554
No 302
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=95.98 E-value=0.035 Score=52.73 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=65.8
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++++||..|+|++|..++.+|+.+ |++|+.++.+++..+.+++ .|...-+.....+..+....++.+|+++
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~d~vi 233 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK-----LGAHHYIDTSKEDVAEALQELGGAKLIL 233 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH-----cCCcEEecCCCccHHHHHHhcCCCCEEE
Confidence 36788999999999999999999864 8999999999887777654 3321111111111111111224689887
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
-.. + ....+.+..+.++++|+++.-..
T Consensus 234 ~~~--g-----~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 234 ATA--P-----NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ECC--C-----chHHHHHHHHHcccCCEEEEEec
Confidence 432 1 12367777899999999987653
No 303
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.97 E-value=0.033 Score=50.02 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=64.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-c-CcCCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-V-SSALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l-~~~l~~fD~V 197 (318)
.++++||..|+|++|..++.+|+. .|.+|++++.+++..+.++++ |...-+.....+... + ....+.+|+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKA--AGARVIVTDRSDEKLELAKEL-----GADHVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHh-----CCceeccCCcCCHHHHHHHhcCCCCCEE
Confidence 678999999999888888888886 489999999999877776543 211111111001000 0 0122479999
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+...- . ...+..+.+.|+++|+++.-..
T Consensus 206 i~~~~------~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 206 IDAVG------G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EECCC------C-HHHHHHHHHhcccCCEEEEEcc
Confidence 85541 1 1456777889999999987653
No 304
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.97 E-value=0.025 Score=56.61 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=61.7
Q ss_pred CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCC---------CCeEEEEccccccCcC
Q 021008 123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLS---------TRMFFHTTDIMNVSSA 190 (318)
Q Consensus 123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~---------~ri~f~~gDa~~l~~~ 190 (318)
++|.+||.|-+|.+.- .|++ .|.+|+++|+|++.++.-++-... ..++. .+..+. .+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~--------~~ 72 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT--------TT 72 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee--------cc
Confidence 6899999998877653 3454 489999999999988863210000 01110 112221 11
Q ss_pred CCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 191 LKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 191 l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
....|+||++--.+. +...=..+++.+.+.+++|.+++..+.
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 236799987653221 113445677889999999999988873
No 305
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.95 E-value=0.034 Score=50.52 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=63.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++||.||.|..+...+..... .|+.|+.|+.+.. +.-+++... .+++++.++... .++..+|+|+.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~--~~l~~l~~~-----~~i~~~~~~~~~--~dl~~~~lVi~ 75 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE--SELTLLAEQ-----GGITWLARCFDA--DILEGAFLVIA 75 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC--HHHHHHHHc-----CCEEEEeCCCCH--HHhCCcEEEEE
Confidence 467899999999887776544433 4999999876653 222333333 478998887652 35568999986
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc-CCCcccccccC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS-AHGARAFLYPV 242 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~-~~g~r~~lYP~ 242 (318)
+-- +.+.-.++. ...+.-|.++-.. .-....|..|.
T Consensus 76 at~---d~~ln~~i~----~~a~~~~ilvn~~d~~e~~~f~~pa 112 (205)
T TIGR01470 76 ATD---DEELNRRVA----HAARARGVPVNVVDDPELCSFIFPS 112 (205)
T ss_pred CCC---CHHHHHHHH----HHHHHcCCEEEECCCcccCeEEEee
Confidence 641 222333444 4444456665333 22334587774
No 306
>PLN02827 Alcohol dehydrogenase-like
Probab=95.94 E-value=0.026 Score=55.24 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=63.8
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--cccc----ccCcCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDIM----NVSSAL 191 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa~----~l~~~l 191 (318)
..++++||..|+|++|..++.+|+.+ |+ .|+++|.+++..+.|++ .|...-+.... .+.. ++..
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~-----lGa~~~i~~~~~~~~~~~~v~~~~~-- 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKT-----FGVTDFINPNDLSEPIQQVIKRMTG-- 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH-----cCCcEEEcccccchHHHHHHHHHhC--
Confidence 36789999999999999999999864 77 59999999988777754 33311111111 0111 1111
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~ 231 (318)
+.+|+|+-.. | ....+....+.+++| |++++-.
T Consensus 262 ~g~d~vid~~--G-----~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFECV--G-----DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEECC--C-----ChHHHHHHHHhhccCCCEEEEEC
Confidence 2699888543 2 122456667889999 9987644
No 307
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.93 E-value=0.032 Score=59.57 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-C--------CCCeEEEEcccc
Q 021008 122 PTKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-L--------STRMFFHTTDIM 185 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l--------~~ri~f~~gDa~ 185 (318)
-++|..||+|.+|-.-.. +|.. .|..|+-+|+++++++.+++.+.+. .| + -.++++..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~---- 382 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT---- 382 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC----
Confidence 379999999997765433 3422 4999999999999999986654321 11 1 13555542
Q ss_pred ccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 186 NVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 186 ~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++ ..+.+.|+|+=+.. -+.+-|.++++++-++++|+++|..++
T Consensus 383 ~~-~~~~~aDlViEav~--E~~~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 383 DY-RGFKHADVVIEAVF--EDLALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred Ch-HHhccCCEEeeccc--ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 22 23457899884432 267899999999999999999998766
No 308
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.91 E-value=0.018 Score=54.05 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=65.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-c-CcCCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-V-SSALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l-~~~l~~fD~V 197 (318)
.++.+||..|+|+.|..++.+|+.. |++|++++.+++..+.++++ |...-+.....+..+ + ....+.+|+|
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKEL-----GADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh-----CCCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 6788999999998899999999864 89999999999888777542 331111110001000 0 1122369988
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+-.. + ....++++.+.|++||.++.-.
T Consensus 237 id~~--g-----~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFV--G-----TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECC--C-----CHHHHHHHHHHhhcCCEEEEEC
Confidence 7443 1 1346778889999999998764
No 309
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.90 E-value=0.074 Score=50.79 Aligned_cols=96 Identities=22% Similarity=0.284 Sum_probs=60.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhh-------cCCCCC---------CCeEEEEccccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVS-------SDPDLS---------TRMFFHTTDIMN 186 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~-------~~~gl~---------~ri~f~~gDa~~ 186 (318)
++|.+||+|.+|.+......+ .|.+|+.+|.+++..+.+++... . .|.- .++++. .|..+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~--~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~~~~~~~~~i~~~-~~~~~ 78 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR--AGHEVRLWDADPAAAAAAPAYIAGRLEDLAA-FDLLDGEAPDAVLARIRVT-DSLAD 78 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH--CCCeeEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCchhhHHHHhcCeEEE-CcHHH
Confidence 489999999887654333222 38899999999998888764221 1 2221 234432 23222
Q ss_pred cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEE
Q 021008 187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALL 227 (318)
Q Consensus 187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~l 227 (318)
.....|+|+.+... +..-|..++..+.+..+++..+
T Consensus 79 ---a~~~ad~Vi~avpe--~~~~k~~~~~~l~~~~~~~~ii 114 (308)
T PRK06129 79 ---AVADADYVQESAPE--NLELKRALFAELDALAPPHAIL 114 (308)
T ss_pred ---hhCCCCEEEECCcC--CHHHHHHHHHHHHHhCCCcceE
Confidence 23478999877532 3356888998887766555444
No 310
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.89 E-value=0.038 Score=59.10 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=71.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-C--------CCCeEEEEcccc
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-L--------STRMFFHTTDIM 185 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l--------~~ri~f~~gDa~ 185 (318)
+-++|..||+|.+|-.-...... .|..|+-+|+++++++.+++.+.+. .| + -.++++..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---- 385 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL---- 385 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC----
Confidence 33689999999877664333322 4999999999999999886654320 11 1 12444431
Q ss_pred ccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 186 NVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 186 ~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++ .++++.|+|+=+..- +.+-|.++++++-++++|+++|..++
T Consensus 386 ~~-~~~~~aDlViEav~E--~l~~K~~vf~~l~~~~~~~~ilasnT 428 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAVVE--NPKVKAAVLAEVEQHVREDAILASNT 428 (714)
T ss_pred CH-HHhcCCCEEEEcCcc--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 22 234578999855432 67899999999999999999998876
No 311
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.86 E-value=0.077 Score=54.18 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=65.7
Q ss_pred CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCC--------CCeEEEEccccccCcCC
Q 021008 123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLS--------TRMFFHTTDIMNVSSAL 191 (318)
Q Consensus 123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~--------~ri~f~~gDa~~l~~~l 191 (318)
++|..||+|-+|++. .+||+ ...|.+|+|+|+|++.++.-++-... ..|+. .+.+|. .|.. ...
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~---~~i 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVE---KHV 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHH---HHH
Confidence 589999999988765 44554 22368899999999998874322110 02221 223332 2221 123
Q ss_pred CCccEEEeccccCC-----------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 192 KDYEVVFLAALVGM-----------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm-----------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...|++|+.--.+. +...-..+.+.+.+++++|.++++++
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S 127 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS 127 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 46788887532111 22345688899999999999999888
No 312
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.86 E-value=0.039 Score=53.10 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=66.7
Q ss_pred hhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc
Q 021008 106 LSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM 185 (318)
Q Consensus 106 L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~ 185 (318)
|.+.-.+.|. +.++.-.+|.=-|.+|.|-..|-+ +.+..+++|+|.||.|++.|++.... .++|++|+.+.-.
T Consensus 11 Ll~E~i~~L~---~~~~giyiD~TlG~GGHS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~---~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA---PKPDGIYIDGTLGAGGHSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKE---FDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc---cCCCcEEEEecCCCcHhHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhc---cCCcEEEEeCcHH
Confidence 3344444443 466688888877877899887765 43457799999999999999998876 5699999999876
Q ss_pred ccCcC-----CCCccEEEecccc
Q 021008 186 NVSSA-----LKDYEVVFLAALV 203 (318)
Q Consensus 186 ~l~~~-----l~~fD~V~~aalv 203 (318)
++... .+.+|-|+++--|
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDLGV 106 (314)
T ss_pred HHHHHHHhcCCCceeEEEEeccC
Confidence 65332 2378888766544
No 313
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=95.84 E-value=0.043 Score=53.17 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=64.7
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--ccc----ccCcCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DIM----NVSSAL 191 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da~----~l~~~l 191 (318)
..++++||..|+|++|..++.+|+. .|+ .|+++|.+++..+.+++ .|...-+..... |.. ++..
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~-----lGa~~~i~~~~~~~~~~~~v~~~~~-- 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK-----FGATDCVNPKDHDKPIQQVLVEMTD-- 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH-----cCCCEEEcccccchHHHHHHHHHhC--
Confidence 3678999999999999999999986 488 79999999998887764 333111111111 111 1211
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~ 231 (318)
+.+|+|+-.. | ....+....+.+++| |+++.-.
T Consensus 255 ~g~d~vid~~--g-----~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 255 GGVDYTFECI--G-----NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCcEEEECC--C-----ChHHHHHHHHhhccCCCeEEEEc
Confidence 2699988543 2 123566667889997 8887654
No 314
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.84 E-value=0.087 Score=56.40 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=71.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-C--------CCCeEEEEcccccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-L--------STRMFFHTTDIMNV 187 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l--------~~ri~f~~gDa~~l 187 (318)
++|..||+|.+|-.-..+... .|..|+-+|+++++++.+++.+.+. .| + -.++++. . ++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~---~~ 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-L---DY 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-C---CH
Confidence 689999999977664433333 4999999999999999876554320 11 1 1355543 2 22
Q ss_pred CcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 188 SSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 188 ~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.++++.|+|+=+. . -+.+-|.++|.++-+.++|+.+|..++
T Consensus 388 -~~~~~aDlViEav-~-E~l~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 388 -AGFERVDVVVEAV-V-ENPKVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred -HHhcCCCEEEecc-c-CcHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 2345789988443 2 267899999999999999999988866
No 315
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=95.81 E-value=0.028 Score=60.36 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=71.2
Q ss_pred CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-CC--------CCeEEEEccccc
Q 021008 123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-LS--------TRMFFHTTDIMN 186 (318)
Q Consensus 123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l~--------~ri~f~~gDa~~ 186 (318)
++|..||+|.+|-.- .++|. .|..|+-+|+++++++.+.+.+.+. .| +. .++++. .|
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 408 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD---KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LD--- 408 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh---CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CC---
Confidence 689999999887663 33443 4999999999999999986655420 11 11 355543 22
Q ss_pred cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+ ..+++.|+|+=+.. -+.+-|.++++++-++++|+++|..++
T Consensus 409 ~-~~~~~aDlViEAv~--E~l~~K~~vf~~l~~~~~~~~ilasNT 450 (737)
T TIGR02441 409 Y-SGFKNADMVIEAVF--EDLSLKHKVIKEVEAVVPPHCIIASNT 450 (737)
T ss_pred H-HHhccCCeehhhcc--ccHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 2 23457898884432 266899999999999999999998866
No 316
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=95.78 E-value=0.044 Score=53.09 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=64.6
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc------ccccCcCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD------IMNVSSAL 191 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD------a~~l~~~l 191 (318)
..++.+||..|+|++|..++.+|+.+ |+ +|+++|.+++..+.++++ |...-+....-+ +.++. .
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~~~~~-----ga~~~i~~~~~~~~~~~~~~~~~-~- 252 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIA--GASRIIGVDINEDKFEKAKEF-----GATDFINPKDSDKPVSEVIREMT-G- 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc-----CCCcEeccccccchHHHHHHHHh-C-
Confidence 36789999999999999999999864 87 799999999888877653 321111111100 11121 2
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~ 231 (318)
..+|+|+-.. | . ...+....+.++|| |+++.-.
T Consensus 253 ~g~d~vid~~--g----~-~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSFECT--G----N-ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEEECC--C----C-hHHHHHHHHhcccCCCEEEEEc
Confidence 3699888433 2 1 23566677899886 8887755
No 317
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=95.73 E-value=0.044 Score=52.99 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=64.1
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--cc----cccCcCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DI----MNVSSAL 191 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da----~~l~~~l 191 (318)
..++++||..|+|++|..++.+|+. .|+ +|+++|.+++..+.+++ .|...-+..... +. .++..
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~-----~Ga~~~i~~~~~~~~~~~~v~~~~~-- 255 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK-----FGVTEFVNPKDHDKPVQEVIAEMTG-- 255 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH-----cCCceEEcccccchhHHHHHHHHhC--
Confidence 3678999999999999999999986 487 89999999988887755 333111111110 01 11211
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhccCC-eEEEEEc
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPG-ALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpG-g~lv~r~ 231 (318)
+.+|+|+-.. | . ...+....+.+++| |++++-.
T Consensus 256 ~~~d~vid~~--G----~-~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 256 GGVDYSFECT--G----N-IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CCCCEEEECC--C----C-hHHHHHHHHHhhcCCCEEEEEC
Confidence 2689887432 2 1 23555567889996 8887755
No 318
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.70 E-value=0.053 Score=51.00 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=54.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH-hhcCCCCCCCeEEEEcc-ccccCcCCCCccEEEec
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL-VSSDPDLSTRMFFHTTD-IMNVSSALKDYEVVFLA 200 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~-~~~~~gl~~ri~f~~gD-a~~l~~~l~~fD~V~~a 200 (318)
.||+.||+|++|.+......+ .|..|+.++. ++.++..++. ..- .+...+..+ ... ..+.......+|+||++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r-~~~~~~~~~~g~~~-~~~~~~~~~-~~~~~~~~~~~~~~~d~vila 75 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR-PKRAKALRERGLVI-RSDHGDAVV-PGPVITDPEELTGPFDLVILA 75 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH--CCCceEEEec-HHHHHHHHhCCeEE-EeCCCeEEe-cceeecCHHHccCCCCEEEEE
Confidence 479999999987754333322 3788999999 6655544321 000 000111111 111 11111112579999987
Q ss_pred cccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 201 ALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
. +...-..+++.+...+.++..++.
T Consensus 76 v----k~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 76 V----KAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred e----cccCHHHHHHHHHhhcCCCCEEEE
Confidence 5 223456688888888888876553
No 319
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.016 Score=56.97 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=70.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f 194 (318)
-+|++|||||.||+ |.++.+...+|.- .++-++-||..-+....+.+. .+. .+.....+|+ .+++.. +.|
T Consensus 112 fapqsiLDvG~GPg--tgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~n-v~t-~~td~r~s~vt~dRl~lp~a-d~y 186 (484)
T COG5459 112 FAPQSILDVGAGPG--TGLWALNDIWPDLKSAVILEASPALRKVGDTLAEN-VST-EKTDWRASDVTEDRLSLPAA-DLY 186 (484)
T ss_pred cCcchhhccCCCCc--hhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhh-ccc-ccCCCCCCccchhccCCCcc-cee
Confidence 57889999999963 6665554445643 466778899888887777665 333 2233334444 345432 268
Q ss_pred cEEEe-ccccCCC-hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFL-AALVGMD-KDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~-aalvgm~-~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|++++ +-|++|- ..+-...+++++..++|||.||+-+
T Consensus 187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 87774 4566542 1223458999999999999998866
No 320
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=95.67 E-value=0.056 Score=52.32 Aligned_cols=97 Identities=9% Similarity=0.115 Sum_probs=62.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+|+..|+|++|..++.+|+.+ |++|+.++.+++....+. ++ .|.. . .+...+...+......+|+|+-
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~---~~-~Ga~-~-~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEAL---EH-LGAD-D-YLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH---Hh-cCCc-E-EecCCChHHHHHhcCCCcEEEE
Confidence 5788999999999999999999864 889999998886554432 22 3432 1 1111111112111236898884
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.. | ....+....+.+++||+++.-.
T Consensus 251 ~~--g-----~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 251 TV--P-----VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CC--C-----chHHHHHHHHHhccCCEEEEEC
Confidence 43 2 1235666678999999988765
No 321
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.67 E-value=0.042 Score=52.77 Aligned_cols=98 Identities=13% Similarity=0.022 Sum_probs=57.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+++|+.||+|++|.......+.. .+..|+.+|.+++. ++++..+ .|. ..+.. .++......+|+|+.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~~~r---a~~la~~-~g~----~~~~~--~~~~~~l~~aDvVi~ 244 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYER---AEELAKE-LGG----NAVPL--DELLELLNEADVVIS 244 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHH---HHHHHHH-cCC----eEEeH--HHHHHHHhcCCEEEE
Confidence 4789999999999887765555432 24689999999853 3334444 332 22221 223233457899997
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+.-. + .. ...++.+.+..+.++.++++-+
T Consensus 245 at~~--~-~~-~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 245 ATGA--P-HY-AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCC--C-ch-HHHHHHHHhhCCCCCeEEEEeC
Confidence 7532 1 12 3444444433333567777664
No 322
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.66 E-value=0.021 Score=58.69 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CCC---------CCCeEEEEccc
Q 021008 121 FPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PDL---------STRMFFHTTDI 184 (318)
Q Consensus 121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~gl---------~~ri~f~~gDa 184 (318)
+-++|.+||.|.+|..- ..+|+ .|..|+.+|+++++++.+.+.+++. .|. -.++++. .|.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 45799999999877543 33443 4999999999999999975444320 121 1235543 232
Q ss_pred cccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 185 MNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 185 ~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
. +..+.|+|+-+..- +.+-|..++.++.+.++|+.+|+.+.
T Consensus 82 ~----~~~~aDlViEav~E--~~~vK~~vf~~l~~~~~~~ailasnt 122 (507)
T PRK08268 82 A----DLADCDLVVEAIVE--RLDVKQALFAQLEAIVSPDCILATNT 122 (507)
T ss_pred H----HhCCCCEEEEcCcc--cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2 23478999966432 56889999999999889998887544
No 323
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=95.66 E-value=0.055 Score=51.21 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=63.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.++.+||..|+|.+|..++.+|+.. |. .|++++.+++..+.++++ |...-+.....+..++......+|+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~-----g~~~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAM-----GADETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHc-----CCCEEEcCCchhhhhhhccCCCccEEE
Confidence 4789999999998899999999863 87 799999998877766553 221111111111112222223599988
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-... ....++++.+.|+++|+++.-.
T Consensus 237 d~~g-------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 237 EASG-------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ECCC-------CHHHHHHHHHHHhcCCEEEEEe
Confidence 5431 1235677889999999988643
No 324
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.64 E-value=0.041 Score=44.80 Aligned_cols=84 Identities=15% Similarity=0.079 Sum_probs=58.8
Q ss_pred ChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-------ccCcCCCCccEEEeccccCC
Q 021008 133 LPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-------NVSSALKDYEVVFLAALVGM 205 (318)
Q Consensus 133 lp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-------~l~~~l~~fD~V~~aalvgm 205 (318)
+|+.++.+|+.+ |++|+++|.+++..+.++++-.. .++..+-. ++. ....+|+||-..-
T Consensus 2 vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~Ga~--------~~~~~~~~~~~~~i~~~~-~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 2 VGLMAIQLAKAM--GAKVIATDRSEEKLELAKELGAD--------HVIDYSDDDFVEQIRELT-GGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTES--------EEEETTTSSHHHHHHHHT-TTSSEEEEEESSS---
T ss_pred hHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhccc--------cccccccccccccccccc-ccccceEEEEecC---
Confidence 678889999864 79999999999998888775322 11222111 221 1136999996542
Q ss_pred ChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 206 DKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 206 ~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
....++...+.++|||++++-...+
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1457888889999999999887554
No 325
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.62 E-value=0.042 Score=53.73 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=83.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccCcCC--CCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVSSAL--KDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~~~l--~~fD~ 196 (318)
.++.+|+.+|+|..|++++.-|+.. .-.+|++||++++..++|+++=+. +-++=... |+.+...++ ..-|.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~fGAT-----~~vn~~~~~~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKKFGAT-----HFVNPKEVDDVVEAIVELTDGGADY 257 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHhcCCc-----eeecchhhhhHHHHHHHhcCCCCCE
Confidence 7889999999999999999999853 345899999999999999886443 11111111 232211111 26788
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCccc-ccccCCCccccCCcEEEEE--EcCchhHHHHHHHHhhc
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARA-FLYPVVDPSDLLGFEVLSV--FHPTDEVINSVVLARKY 273 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~-~lYP~v~~~~l~gf~~~~~--~~p~~~VvNsvv~ark~ 273 (318)
+|-.. | ..++++.....+.++|..++---.+... .--+.++.-.-+.|.-... ..|..++-.-|-++++.
T Consensus 258 ~~e~~--G-----~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~~G 330 (366)
T COG1062 258 AFECV--G-----NVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAG 330 (366)
T ss_pred EEEcc--C-----CHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeeccceEEEEeecCCccccchhHHHHHHHcC
Confidence 86433 2 1236666667777799887766322222 2222222111133433222 35666665555566665
Q ss_pred c
Q 021008 274 V 274 (318)
Q Consensus 274 ~ 274 (318)
+
T Consensus 331 k 331 (366)
T COG1062 331 K 331 (366)
T ss_pred C
Confidence 4
No 326
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.61 E-value=0.057 Score=51.04 Aligned_cols=98 Identities=7% Similarity=-0.007 Sum_probs=64.1
Q ss_pred cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccccC--cCCCCc
Q 021008 119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNVS--SALKDY 194 (318)
Q Consensus 119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l~--~~l~~f 194 (318)
..++.+||..| +|++|..++.+|+. .|++|++++.+++..+.+++ .|...-+..... +..+.. ...+.+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~--~G~~Vi~~~~s~~~~~~~~~-----lGa~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKVAYLKK-----LGFDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH-----cCCCEEEeccccccHHHHHHHhCCCCe
Confidence 36789999999 68899999999986 49999999999987777654 333111111111 111100 011369
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+-.. | . ..+....+.+++||+++.-.
T Consensus 209 dvv~d~~--G----~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYFDNV--G----G--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEEECC--C----H--HHHHHHHHHhCcCcEEEEec
Confidence 9888432 2 1 23567789999999998754
No 327
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.60 E-value=0.096 Score=52.49 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=80.5
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-cCCC-CccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-SALK-DYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-~~l~-~fD~ 196 (318)
+.++.||||.=+-|+|-|+. +|.-+--...|.+-|.+...+..-+.++.+ .|. .+.-....|..+.| .... +||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~-IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-lGv-~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTH-IAALMKNTGVIFANDSNENRLKSLKANLHR-LGV-TNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHH-HHHHHcCCceEEecccchHHHHHHHHHHHH-hCC-CceEEEccCcccccccccCcccce
Confidence 47889999999999999974 565443356899999999999999999998 887 44555677877654 2222 7999
Q ss_pred EEecccc-C--C---C------h---------hHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALV-G--M---D------K---------DEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalv-g--m---~------~---------~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|.++|-+ | + + + .--.++|.+....++|||+||+-.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 9988744 2 1 0 0 011356667778999999998855
No 328
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.60 E-value=0.081 Score=54.15 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=60.3
Q ss_pred CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHh-------hcC--CCC--CCCeEEEEccccccCcC
Q 021008 123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLV-------SSD--PDL--STRMFFHTTDIMNVSSA 190 (318)
Q Consensus 123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~-------~~~--~gl--~~ri~f~~gDa~~l~~~ 190 (318)
++|.+||+|.+|..-. .+++ .|..|+.+|++++..+...+.. ... ..+ ..++++. .| +...
T Consensus 5 ~kIavIG~G~MG~~iA~~la~---~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~---~~ea 77 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL---AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-AS---LAEA 77 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CC---HHHH
Confidence 5899999998776532 2333 4889999999999987643321 110 000 1134432 22 2223
Q ss_pred CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
....|+|+.+.-- +.+-|..+++++...++|+.+|..
T Consensus 78 ~~~aD~Vieavpe--~~~vk~~l~~~l~~~~~~~~iI~S 114 (495)
T PRK07531 78 VAGADWIQESVPE--RLDLKRRVLAEIDAAARPDALIGS 114 (495)
T ss_pred hcCCCEEEEcCcC--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 3578999966421 335588899999888888765433
No 329
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.59 E-value=0.13 Score=51.83 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=63.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCC-----CCeEEEEccccccCcCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLS-----TRMFFHTTDIMNVSSALK 192 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~-----~ri~f~~gDa~~l~~~l~ 192 (318)
.++.+|.+||.|-+|++.-.... .+.+|+|+|+|++.++.-++-..- ..++. .+..+. .+.. ...
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la---~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~~----~~~ 75 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFG---KSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEIE----KIK 75 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHh---cCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCHH----HHc
Confidence 56789999999998877533222 368999999999998886521110 00100 122222 2211 124
Q ss_pred CccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 193 DYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 193 ~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..|++|+.---+. +...=....+.+.+.+++|.+++.++
T Consensus 76 ~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 76 ECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred CCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec
Confidence 6898887642221 11233334568889999999999988
No 330
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.57 E-value=0.023 Score=52.86 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=46.4
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHH---HhhcCCCC----CCCeEEEEccccccCc-CCCCc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALS---LVSSDPDL----STRMFFHTTDIMNVSS-ALKDY 194 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~---~~~~~~gl----~~ri~f~~gDa~~l~~-~l~~f 194 (318)
.+|||.=+| +|-.|+.+|. .|++|++++.||-...+-+. ........ ..||+++.+|..+... ...+|
T Consensus 77 ~~VLDaTaG-LG~Da~vlA~---~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~ 152 (234)
T PF04445_consen 77 PSVLDATAG-LGRDAFVLAS---LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSF 152 (234)
T ss_dssp --EEETT-T-TSHHHHHHHH---HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--
T ss_pred CEEEECCCc-chHHHHHHHc---cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCC
Confidence 499999999 9999999986 39999999999976555432 22221222 2599999999998543 23489
Q ss_pred cEEEecccc
Q 021008 195 EVVFLAALV 203 (318)
Q Consensus 195 D~V~~aalv 203 (318)
|+||++=+.
T Consensus 153 DVVY~DPMF 161 (234)
T PF04445_consen 153 DVVYFDPMF 161 (234)
T ss_dssp SEEEE--S-
T ss_pred CEEEECCCC
Confidence 999988655
No 331
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.01 Score=52.59 Aligned_cols=129 Identities=16% Similarity=0.212 Sum_probs=85.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC--CCCCCCeEEEEccccc--cCcCCCCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD--PDLSTRMFFHTTDIMN--VSSALKDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~--~gl~~ri~f~~gDa~~--l~~~l~~fD 195 (318)
-.+++|+++|.|-.+++.+++|.. .|...|.--|-+++++.--++....- .++ .++....-+... ....-..||
T Consensus 28 ~rg~~ilelgggft~laglmia~~-a~~~~v~ltdgne~svrnv~ki~~~n~~s~~-tsc~vlrw~~~~aqsq~eq~tFD 105 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACK-APDSSVWLTDGNEESVRNVEKIRNSNMASSL-TSCCVLRWLIWGAQSQQEQHTFD 105 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeee-cCCceEEEecCCHHHHHHHHHHHhccccccc-ceehhhHHHHhhhHHHHhhCccc
Confidence 456899999999999999999974 58899999999999998887776541 122 222221111110 111223899
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC---CCcccccccCCCccccCCcEEEE
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA---HGARAFLYPVVDPSDLLGFEVLS 255 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~---~g~r~~lYP~v~~~~l~gf~~~~ 255 (318)
+|..+--+-. .+..+.+.+-|.++|+|.|.-++-++ +.+..|+ +.....||.+..
T Consensus 106 iIlaADClFf-dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~----de~~~~gf~v~l 163 (201)
T KOG3201|consen 106 IILAADCLFF-DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFL----DEVGTVGFTVCL 163 (201)
T ss_pred EEEeccchhH-HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHH----HHHHhceeEEEe
Confidence 9886543322 37788899999999999998666554 3333455 211223887744
No 332
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.55 E-value=0.095 Score=49.11 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=56.5
Q ss_pred CEEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 123 TKIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
.||+.||+|.+|..... |++ .|..|+.+|.+++..+..++.-.. .. .........-..+. .+...+|+|+++-
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~g~~-~~-~~~~~~~~~~~~~~-~~~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQ---AGHDVTLVARRGAHLDALNENGLR-LE-DGEITVPVLAADDP-AELGPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHh---CCCeEEEEECChHHHHHHHHcCCc-cc-CCceeecccCCCCh-hHcCCCCEEEEec
Confidence 37999999998765433 333 478999999988766554432111 00 11111100001111 1225799999774
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
...+-..+++.+...+.++..++.
T Consensus 75 ----k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 75 ----KAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred ----ccccHHHHHHHHhhhcCCCCEEEE
Confidence 223456788888888888876654
No 333
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.55 E-value=0.03 Score=55.60 Aligned_cols=78 Identities=26% Similarity=0.250 Sum_probs=59.5
Q ss_pred eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC--CCccE-EEeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 154 DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL--KDYEV-VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 154 Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l--~~fD~-V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
+..|..+..-.=-.-+ .++ ++++++++++.+..... ++||. |+.+++-.|+.+.-.+.+++|.+.++|||+|++|
T Consensus 256 ~~~P~YL~~e~f~~lr-~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 256 DCCPPYLRPENFEALR-ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CCCChhhcHhHHHHHh-cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 5666655543211112 566 99999999999865533 58995 5567777889999999999999999999999999
Q ss_pred cCC
Q 021008 231 SAH 233 (318)
Q Consensus 231 ~~~ 233 (318)
++.
T Consensus 334 sa~ 336 (380)
T PF11899_consen 334 SAA 336 (380)
T ss_pred eCC
Confidence 963
No 334
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.54 E-value=0.049 Score=52.07 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=65.9
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKD 193 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~ 193 (318)
..++++||..|+|++|..++.+|+.. |+ .|+++|.+++..+.+++ .|...-+.....+. .++. .-..
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~-----~g~~~~v~~~~~~~~~~i~~~~-~~~~ 235 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKE-----YGATDIVDYKNGDVVEQILKLT-GGKG 235 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH-----cCCceEecCCCCCHHHHHHHHh-CCCC
Confidence 36789999999999999999999864 77 59999999988877764 33321112111111 1111 1126
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+++-.. + . ...+.+..+.|+++|+++.-.
T Consensus 236 ~d~vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 236 VDAVIIAG--G----G-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CcEEEECC--C----C-HHHHHHHHHHhhcCCEEEEec
Confidence 99888543 1 1 246778889999999988644
No 335
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=95.53 E-value=0.035 Score=54.86 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=66.6
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-ccc----cccCcCCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TDI----MNVSSALK 192 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gDa----~~l~~~l~ 192 (318)
..++++||..|+|++|..++.+|+.+ |++ |+.+|.+++..+.|+++ |. +.+.... .+. .++. ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~--Ga~~vi~~d~~~~r~~~a~~~-----Ga-~~v~~~~~~~~~~~v~~~~-~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLL--GAAVVIVGDLNPARLAQARSF-----GC-ETVDLSKDATLPEQIEQIL-GEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHHHHHc-----CC-eEEecCCcccHHHHHHHHc-CCC
Confidence 36789999999999999999999864 776 56678988888887653 33 1111111 111 1111 113
Q ss_pred CccEEEeccccCC-------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 193 DYEVVFLAALVGM-------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 193 ~fD~V~~aalvgm-------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+|+|+-..-..- .+.+....+++..+.+++||++++-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 6898885432100 01223457888889999999998754
No 336
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.52 E-value=0.16 Score=49.05 Aligned_cols=107 Identities=14% Similarity=0.228 Sum_probs=67.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
+.+.||..||+|..|.+..++.....--.++.-+|++++. -..+..+... ..+..++.+..+|-. ++...|+|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~-~~~~~~~~i~~~~~~----~~~~adivI 78 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHA-VPFTSPTKIYAGDYS----DCKDADLVV 78 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhh-ccccCCeEEEeCCHH----HhCCCCEEE
Confidence 5778999999999888876655432112379999998764 3555555544 333245666554433 345899988
Q ss_pred ecccc----CCChhH----HHHHHHHHHHhcc---CCeEEEEEc
Q 021008 199 LAALV----GMDKDE----KIRVIDHLAKYMA---PGALLMLRS 231 (318)
Q Consensus 199 ~aalv----gm~~~~----k~~vl~~l~r~Lk---pGg~lv~r~ 231 (318)
+.+-+ ||+..+ -..++.++...++ |.|.+++-+
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 87755 443322 3455666555554 678776654
No 337
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.52 E-value=0.13 Score=51.17 Aligned_cols=102 Identities=24% Similarity=0.343 Sum_probs=60.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCCC-----CCeEEEE-ccccccCcCCCCc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDLS-----TRMFFHT-TDIMNVSSALKDY 194 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl~-----~ri~f~~-gDa~~l~~~l~~f 194 (318)
++|..||.|-+|+....+.. .|..|+++|+|++.++..++-... ..++. .+.++.. .|..+ .....
T Consensus 1 mkI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~---~~~~a 74 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE---AYRDA 74 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh---hhcCC
Confidence 37999999988866544332 278999999999999888762211 01111 1222321 11111 12367
Q ss_pred cEEEeccccCCC-------hhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMD-------KDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~-------~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+++---..+ ...-..+++.+.+ ++||.+++..+
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S 117 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS 117 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee
Confidence 888876422111 1233456788877 79998888877
No 338
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.51 E-value=0.053 Score=52.40 Aligned_cols=99 Identities=8% Similarity=0.009 Sum_probs=64.8
Q ss_pred cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-cccc-cCc-CCCCc
Q 021008 119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMN-VSS-ALKDY 194 (318)
Q Consensus 119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~-l~~-~l~~f 194 (318)
..++++||..|+ |++|..++.+|+. .|++|++++.+++..+.+++ . .|...-+..... |..+ +.. ..+.+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~--~G~~Vi~~~~~~~k~~~~~~---~-lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKL--HGCYVVGSAGSSQKVDLLKN---K-LGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH---h-cCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 367899999998 9999999999986 49999999999887666542 2 333211221111 2111 100 11368
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+-.. | . ..+....+.|++||++++-.
T Consensus 230 D~v~d~v--G----~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYFDNV--G----G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEEECC--C----H--HHHHHHHHHhccCCEEEEEC
Confidence 9888432 2 1 35677789999999998654
No 339
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.49 E-value=0.082 Score=49.55 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=55.0
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecccc
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAALV 203 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aalv 203 (318)
+|.+||+|.+|.+-.....+.....+|+++|++++..+.+++ .|..+. ..+..++ ...|+|+++-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-----~g~~~~----~~~~~~~----~~aD~Vilav-- 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-----LGLVDE----IVSFEEL----KKCDVIFLAI-- 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-----CCCCcc----cCCHHHH----hcCCEEEEeC--
Confidence 799999998877643322221112479999999988776642 333211 1122222 2489999876
Q ss_pred CCChhHHHHHHHHHHHhccCCeEEE
Q 021008 204 GMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 204 gm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+...-.+++.++.. ++||..++
T Consensus 67 --p~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 67 --PVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred --cHHHHHHHHHHHhc-cCCCCEEE
Confidence 44566778888888 88887554
No 340
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=95.43 E-value=0.1 Score=47.83 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=64.6
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV 197 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V 197 (318)
..++.+||..|+|++|..++.+|+.+ |++ |++++.+++..+.++++ |..+.+..... .. .....+|+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~-----g~~~~~~~~~~---~~-~~~~~~d~v 163 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEAL-----GPADPVAADTA---DE-IGGRGADVV 163 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHc-----CCCccccccch---hh-hcCCCCCEE
Confidence 36789999999999999999999874 777 99999999887777654 21111111100 11 122369988
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+-.... ...+....+.|+++|+++.-.
T Consensus 164 l~~~~~-------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 164 IEASGS-------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEccCC-------hHHHHHHHHHhcCCcEEEEEe
Confidence 854321 235677788999999987644
No 341
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.42 E-value=0.065 Score=56.55 Aligned_cols=111 Identities=20% Similarity=0.155 Sum_probs=72.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhC------CC-----CcEEEEEeCCh---HHH-----------HHHHHHhhc----C
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINH------LT-----TTCFDNYDIDP---SAN-----------SKALSLVSS----D 170 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~------~~-----ga~V~gvDid~---~ai-----------~~Ar~~~~~----~ 170 (318)
...-+|+|+|=| +|+-.+...+.. .+ .-+++++|.+| +.+ +.++++... .
T Consensus 56 ~~~~~i~e~gfG-~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (662)
T PRK01747 56 RRRFVIAETGFG-TGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL 134 (662)
T ss_pred CCcEEEEecCcc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence 344699999999 688766655432 12 24799999765 222 223333321 0
Q ss_pred CCC------CC--CeEEEEccccccCcCCC-CccEEEeccccCC-ChhHH-HHHHHHHHHhccCCeEEEEEc
Q 021008 171 PDL------ST--RMFFHTTDIMNVSSALK-DYEVVFLAALVGM-DKDEK-IRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 171 ~gl------~~--ri~f~~gDa~~l~~~l~-~fD~V~~aalvgm-~~~~k-~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.|+ +. +.+++.||+.+....+. .||++|++++-+- +++.+ .++|.+|++.++|||+++.-+
T Consensus 135 ~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 135 PGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 222 12 44577899987555553 6999999998642 22222 579999999999999998765
No 342
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.38 E-value=0.095 Score=48.44 Aligned_cols=104 Identities=11% Similarity=0.029 Sum_probs=63.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEE--eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNY--DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVV 197 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gv--Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V 197 (318)
..+++||.||.|..+..-+..... .|+.||-| +++++..+++. . .+++++..+... .++..+++|
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~i~~el~~l~~----~-----~~i~~~~r~~~~--~dl~g~~LV 89 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKKFSKEFLDLKK----Y-----GNLKLIKGNYDK--EFIKDKHLI 89 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCCCHHHHHHHh----C-----CCEEEEeCCCCh--HHhCCCcEE
Confidence 678899999999877665544333 47777776 77777655432 2 568888765432 345678999
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeE-EEEEcCCCcccccccCC
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGAL-LMLRSAHGARAFLYPVV 243 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~-lv~r~~~g~r~~lYP~v 243 (318)
|.+. +. .++=+.+++..+.-+. +.+.+......|..|.+
T Consensus 90 iaAT----dD---~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAi 129 (223)
T PRK05562 90 VIAT----DD---EKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQ 129 (223)
T ss_pred EECC----CC---HHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeE
Confidence 9775 21 2233444555554344 43333334456888853
No 343
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.38 E-value=0.055 Score=42.10 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=54.4
Q ss_pred EEEEEccCCChHHHHHHHHhCCCC---cEEE-EEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTT---TCFD-NYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~g---a~V~-gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
||.+||+|.+|.+...-..+ .| .+|. +.+.+++..+.. ..+ .+ +.+...+..++. ...|+|++
T Consensus 1 kI~iIG~G~mg~al~~~l~~--~g~~~~~v~~~~~r~~~~~~~~---~~~-~~----~~~~~~~~~~~~---~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLA--SGIKPHEVIIVSSRSPEKAAEL---AKE-YG----VQATADDNEEAA---QEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHH--TTS-GGEEEEEEESSHHHHHHH---HHH-CT----TEEESEEHHHHH---HHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCceeEEeeccCcHHHHHHH---HHh-hc----cccccCChHHhh---ccCCEEEE
Confidence 68999999776654322112 35 7888 459999665554 343 22 344433433332 26899998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+- +...-.+++.++ +...+|..++
T Consensus 68 av----~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 68 AV----KPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp -S-----GGGHHHHHHHH-HHHHTTSEEE
T ss_pred EE----CHHHHHHHHHHH-hhccCCCEEE
Confidence 86 556778899888 7788877765
No 344
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=95.38 E-value=0.068 Score=57.04 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=70.8
Q ss_pred CEEEEEccCCChHHHHHH-HHhCCCCcEEEEEeCChHHHHHHHHHhhcC-------CCC--------CCCeEEEEccccc
Q 021008 123 TKIAFIGSGPLPLTSIVL-AINHLTTTCFDNYDIDPSANSKALSLVSSD-------PDL--------STRMFFHTTDIMN 186 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~L-A~~~~~ga~V~gvDid~~ai~~Ar~~~~~~-------~gl--------~~ri~f~~gDa~~ 186 (318)
++|..||+|.+|-.-..+ |.+ .|..|+-+|+|+++++.+.+.+.+. ..+ -.++++. . +
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~--~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~---~ 378 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATK--AGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-T---D 378 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-C---C
Confidence 689999999987664433 322 4899999999999999886554320 111 1355553 2 2
Q ss_pred cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 187 VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 187 l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+ ..+++.|+|+=+.. -+.+-|.++++++-++++|+.+|..++
T Consensus 379 ~-~~~~~adlViEav~--E~l~~K~~v~~~l~~~~~~~~ilasnT 420 (699)
T TIGR02440 379 Y-RGFKDVDIVIEAVF--EDLALKHQMVKDIEQECAAHTIFASNT 420 (699)
T ss_pred h-HHhccCCEEEEecc--ccHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence 2 24468899984432 267899999999999999999888766
No 345
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.38 E-value=0.026 Score=57.25 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=78.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC-------cCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS-------SALK 192 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~-------~~l~ 192 (318)
..+.++|.||-|.+++.+.... ++|.+++|+|++||++.+.|++.+.- --.+|.+.+..|+.+-. .+..
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~--~~p~~~i~~ve~dP~~l~va~q~f~f--~q~~r~~V~i~dGl~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHM--SLPKFQITAVEIDPEMLEVATQYFGF--MQSDRNKVHIADGLDFLQRTAKSQQEDI 369 (482)
T ss_pred cccCcEEEEecCCCccccceee--ecCccceeEEEEChhHhhccHhhhch--hhhhhhhhhHhhchHHHHHHhhcccccc
Confidence 4557899999988788875443 46899999999999999999999764 12347888888887521 1334
Q ss_pred CccEEEecc----ccCCChh----HHHHHHHHHHHhccCCeEEEEEc
Q 021008 193 DYEVVFLAA----LVGMDKD----EKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 193 ~fD~V~~aa----lvgm~~~----~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.||+++++- -.||... --..++..+...+.|.|.++++-
T Consensus 370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 799998642 2355321 12457888889999999997755
No 346
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.37 E-value=0.067 Score=50.96 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=56.8
Q ss_pred CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
++|.+||+|.+|.+.. .|++ .|.+|+++|++++..+..++. |... ..+..++...+...|+|++.-
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~---~g~~V~~~dr~~~~~~~l~~~-----g~~~-----~~s~~~~~~~~~~~dvIi~~v 67 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAK---RGHDCVGYDHDQDAVKAMKED-----RTTG-----VANLRELSQRLSAPRVVWVMV 67 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHc-----CCcc-----cCCHHHHHhhcCCCCEEEEEc
Confidence 3799999998876532 2333 488999999999876665431 2110 123333322334679998764
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+...-..+++++...+++|.+++
T Consensus 68 ----p~~~~~~v~~~l~~~l~~g~ivi 90 (298)
T TIGR00872 68 ----PHGIVDAVLEELAPTLEKGDIVI 90 (298)
T ss_pred ----CchHHHHHHHHHHhhCCCCCEEE
Confidence 22345678889999999986554
No 347
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.35 E-value=0.081 Score=50.78 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=54.6
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC-CCCeEEEEcc--c-cccCcCCCCccEEE
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL-STRMFFHTTD--I-MNVSSALKDYEVVF 198 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-~~ri~f~~gD--a-~~l~~~l~~fD~V~ 198 (318)
+||.+||+|.+|.+-.....+ .|..|+.+|.++.. +..++.-....+. +.+....... . .+. .....+|+|+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 78 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA--AGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL 78 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh--cCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence 489999999887654333332 37899999997643 2222210000000 1111110000 0 111 2334799999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
++- +.....++++.+...++++..++
T Consensus 79 l~v----k~~~~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 79 VTV----KSAATADAAAALAGHARPGAVVV 104 (341)
T ss_pred EEe----cCcchHHHHHHHHhhCCCCCEEE
Confidence 764 23456778899999898887654
No 348
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.31 E-value=0.11 Score=49.20 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=59.5
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCC---C--CCCCeEEEEccccccCcCCCCccEE
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDP---D--LSTRMFFHTTDIMNVSSALKDYEVV 197 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~---g--l~~ri~f~~gDa~~l~~~l~~fD~V 197 (318)
.+|.+||+|.+|........+ .|..|+.+|.+++.++..++.-.... + +..++.+ ..|..+ .....|+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~D~v 75 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLAR--NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE---ALADADLI 75 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH---HHhCCCEE
Confidence 379999999877664332222 47899999999987766544311100 0 0012222 122222 22368999
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
+++- +......+++.+...++||..++.-
T Consensus 76 i~~v----~~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 76 LVAV----PSQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred EEeC----CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 9775 3356778888888888888766543
No 349
>PLN02256 arogenate dehydrogenase
Probab=95.28 E-value=0.11 Score=50.03 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=60.1
Q ss_pred HHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc
Q 021008 103 YIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT 182 (318)
Q Consensus 103 y~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g 182 (318)
|+.-.+.|.. .....+|..||+|-+|.+-....++ .|.+|+++|.++. .+.++ . .|. .+ ..
T Consensus 23 ~~~~~~~~~~------~~~~~kI~IIG~G~mG~slA~~L~~--~G~~V~~~d~~~~-~~~a~----~-~gv----~~-~~ 83 (304)
T PLN02256 23 YESRLQEELE------KSRKLKIGIVGFGNFGQFLAKTFVK--QGHTVLATSRSDY-SDIAA----E-LGV----SF-FR 83 (304)
T ss_pred hHhHHhHhhc------cCCCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEECccH-HHHHH----H-cCC----ee-eC
Confidence 4555555533 2567899999999877654333332 3678999999973 23332 2 333 22 22
Q ss_pred cccccCcCCCCccEEEeccccCCChhHHHHHHHHH-HHhccCCeEE
Q 021008 183 DIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHL-AKYMAPGALL 227 (318)
Q Consensus 183 Da~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l-~r~LkpGg~l 227 (318)
|..++. ....|+|+++. +...-..++.++ ...++||.+|
T Consensus 84 ~~~e~~--~~~aDvVilav----p~~~~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 84 DPDDFC--EEHPDVVLLCT----SILSTEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred CHHHHh--hCCCCEEEEec----CHHHHHHHHHhhhhhccCCCCEE
Confidence 333321 12589999876 334556778887 5668887644
No 350
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.21 E-value=0.095 Score=44.24 Aligned_cols=95 Identities=22% Similarity=0.332 Sum_probs=48.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEe-CChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYD-IDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvD-id~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.+..||-+||+|-.|.+.-..-++ .|..|.+|- .+++..+++..++.. ..+ .+..+ .....|++|
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~--ag~~v~~v~srs~~sa~~a~~~~~~-------~~~--~~~~~---~~~~aDlv~ 73 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALAR--AGHEVVGVYSRSPASAERAAAFIGA-------GAI--LDLEE---ILRDADLVF 73 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHH--TTSEEEEESSCHH-HHHHHHC--TT--------------TTG---GGCC-SEEE
T ss_pred CCccEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCCccccccccccccc-------ccc--ccccc---ccccCCEEE
Confidence 345799999999988875444333 488999874 555454554443322 121 12222 234799999
Q ss_pred eccccCCChhHHHHHHHHHHHh--ccCCeEEEEEcC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKY--MAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~--LkpGg~lv~r~~ 232 (318)
++- +...=..+.+++... .+||-.++=-++
T Consensus 74 iav----pDdaI~~va~~La~~~~~~~g~iVvHtSG 105 (127)
T PF10727_consen 74 IAV----PDDAIAEVAEQLAQYGAWRPGQIVVHTSG 105 (127)
T ss_dssp E-S-----CCHHHHHHHHHHCC--S-TT-EEEES-S
T ss_pred EEe----chHHHHHHHHHHHHhccCCCCcEEEECCC
Confidence 875 223445566666665 667755544443
No 351
>PRK08324 short chain dehydrogenase; Validated
Probab=95.21 E-value=0.29 Score=51.95 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=66.2
Q ss_pred CCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----------c
Q 021008 121 FPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----------S 189 (318)
Q Consensus 121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----------~ 189 (318)
.+++||..|+ |.+|........+ .|++|+.+|++++..+.+.+.... ..++.++.+|+.+.. .
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~--~Ga~Vvl~~r~~~~~~~~~~~l~~----~~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAA--EGACVVLADLDEEAAEAAAAELGG----PDRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHH--CcCEEEEEeCCHHHHHHHHHHHhc----cCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5689999995 5566554333332 489999999999876665444333 157889999987632 1
Q ss_pred CCCCccEEEeccccCC-------ChhH-----------HHHHHHHHHHhccC---CeEEEEEc
Q 021008 190 ALKDYEVVFLAALVGM-------DKDE-----------KIRVIDHLAKYMAP---GALLMLRS 231 (318)
Q Consensus 190 ~l~~fD~V~~aalvgm-------~~~~-----------k~~vl~~l~r~Lkp---Gg~lv~r~ 231 (318)
..+..|+|+..+-+.. +.+. ...+++.+.+.|++ ||.+++-+
T Consensus 495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1346898886553311 1111 24456677777777 67777655
No 352
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.17 E-value=0.071 Score=51.85 Aligned_cols=93 Identities=19% Similarity=0.317 Sum_probs=61.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++|..||+|.+|.+....++. .|.+|+++|.++..... . +++ .. ++...+...|+|++
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~--~G~~V~~~d~~~~~~~~---~----------~~~-~~---~l~ell~~aDiVil 204 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAG--FGATITAYDAYPNKDLD---F----------LTY-KD---SVKEAIKDADIISL 204 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCChhHhhh---h----------hhc-cC---CHHHHHhcCCEEEE
Confidence 467899999999988775555544 49999999999753210 0 111 11 22223347899887
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
+.- .+.+.+.-+-+++...||||++| +..++|
T Consensus 205 ~lP--~t~~t~~li~~~~l~~mk~gavl-IN~aRG 236 (330)
T PRK12480 205 HVP--ANKESYHLFDKAMFDHVKKGAIL-VNAARG 236 (330)
T ss_pred eCC--CcHHHHHHHhHHHHhcCCCCcEE-EEcCCc
Confidence 652 24445666778889999998755 555555
No 353
>PLN02712 arogenate dehydrogenase
Probab=95.15 E-value=0.58 Score=49.87 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=55.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+.+|.+||.|.+|.+.....++ .|.+|+++|.++.. +.++ + .|. .+ ..|..++.. ...|+|++
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~--~G~~V~~~dr~~~~-~~a~----~-~Gv----~~-~~~~~el~~--~~aDvVIL 431 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVK--QGHTVLAYSRSDYS-DEAQ----K-LGV----SY-FSDADDLCE--EHPEVILL 431 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHH--CcCEEEEEECChHH-HHHH----H-cCC----eE-eCCHHHHHh--cCCCEEEE
Confidence 466899999999877654332222 37899999999643 2222 3 332 22 233333221 24799998
Q ss_pred ccccCCChhHHHHHHHHHHH-hccCCeEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAK-YMAPGALLM 228 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r-~LkpGg~lv 228 (318)
+- +...-..+++++.. .++||.+|+
T Consensus 432 av----P~~~~~~vi~~l~~~~lk~g~ivv 457 (667)
T PLN02712 432 CT----SILSTEKVLKSLPFQRLKRSTLFV 457 (667)
T ss_pred CC----ChHHHHHHHHHHHHhcCCCCcEEE
Confidence 86 33455677777765 578876543
No 354
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.13 E-value=0.15 Score=48.78 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=57.3
Q ss_pred CEEEEEccCCChH-HHHHHHHhCCCCcEEEEEeCChHHHHHHHHH--hhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 123 TKIAFIGSGPLPL-TSIVLAINHLTTTCFDNYDIDPSANSKALSL--VSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 123 ~rVL~IGsGplp~-tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~--~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
+||+.||+|++|. -+..|++ .|..|+-++.+++.++.-++. +.- .+.+....+.. ... .+.....||+|++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~~~~~~~i~~~~Gl~i-~~~g~~~~~~~-~~~-~~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR---AGLPVRLILRDRQRLAAYQQAGGLTL-VEQGQASLYAI-PAE-TADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh---CCCCeEEEEechHHHHHHhhcCCeEE-eeCCcceeecc-CCC-CcccccccCEEEE
Confidence 5899999999655 4455554 488999999987555443321 111 01112222211 111 1123358999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+. -.-+-..+++.+...+.|++.++.
T Consensus 77 ~v----K~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 77 AC----KAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EC----CHHhHHHHHHHHHhhCCCCCEEEE
Confidence 74 223445788889999999886644
No 355
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=95.13 E-value=0.075 Score=49.81 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=64.2
Q ss_pred cCCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCc-CCCCcc
Q 021008 119 SRFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSS-ALKDYE 195 (318)
Q Consensus 119 ~~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~-~l~~fD 195 (318)
..++.+||..| +|++|..++.+|+. .|++|++++.+++..+.+++ .|...-+.....|..+ +.. ....+|
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~-----~Ga~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKE-----LGFDAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH-----cCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence 36789999999 68899999999986 49999999999987777665 2331111111111111 100 113689
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+- . +| . ..+....+.++++|+++.-.
T Consensus 214 ~vld-~-~g----~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 214 CYFD-N-VG----G--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEEE-C-CC----H--HHHHHHHHhhccCCEEEEEc
Confidence 8883 3 22 1 35677789999999997643
No 356
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.09 E-value=0.17 Score=53.35 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=69.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEE
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVV 197 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V 197 (318)
..+|+-+|+|..|......-++ .|..++.+|.|++.++.+++ . ....+.||+.+.. ...++.|.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~-----~----g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRK-----F----GMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh-----c----CCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 4799999999988765443332 37899999999999888764 1 2467899999742 234478877
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
++.. +..+....+-..+|.+.|...+++|..+
T Consensus 469 vv~~----~d~~~n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 469 INAI----DDPQTSLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred EEEe----CCHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 7554 3344455555667888999999988743
No 357
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=95.02 E-value=0.18 Score=47.48 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=63.7
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+||.+|+|.+|..++.+|+. .|..|++++.+++..+.++++ |...-+.....+... ...+.+|+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~--~~~~~~d~vi 230 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARKL-----GADEVVDSGAELDEQ--AAAGGADVIL 230 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHh-----CCcEEeccCCcchHH--hccCCCCEEE
Confidence 3678899999999999999999986 489999999999887776442 211111111001000 0113699888
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-... ....+.++.+.|+++|.++.-.
T Consensus 231 ~~~~-------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVV-------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCC-------cHHHHHHHHHhcccCCEEEEEC
Confidence 4321 1235677789999999988764
No 358
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=95.02 E-value=0.071 Score=50.97 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=66.3
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKD 193 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~ 193 (318)
..++.+||..|+|++|..++.+|+.. |+ +|+.++.+++..+.++++ |...-+.....+.. ++. ....
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~~-----ga~~~i~~~~~~~~~~l~~~~-~~~~ 241 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEEL-----GATIVLDPTEVDVVAEVRKLT-GGGG 241 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-----CCCEEECCCccCHHHHHHHHh-CCCC
Confidence 36789999999999999999999864 88 899999999888877653 22111111111211 111 1125
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+|+|+-..- . ...+++..+.|++||+++.-..
T Consensus 242 ~d~vid~~g------~-~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 242 VDVSFDCAG------V-QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCEEEECCC------C-HHHHHHHHHhccCCCEEEEEcc
Confidence 999985431 1 2356777899999999887653
No 359
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.00 E-value=0.24 Score=49.29 Aligned_cols=101 Identities=28% Similarity=0.296 Sum_probs=61.7
Q ss_pred CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHh---hcCCCC---------CCCeEEEEccccccCc
Q 021008 123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLV---SSDPDL---------STRMFFHTTDIMNVSS 189 (318)
Q Consensus 123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~---~~~~gl---------~~ri~f~~gDa~~l~~ 189 (318)
++|.+||+|.+|.+.. .|++ .|.+|+++|++++.++.-++-. .. .|+ ..++++. .|..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~---~G~~V~~~d~~~~~v~~l~~g~~~~~e-~~l~~~~~~~~~~g~l~~~-~~~~~--- 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLAD---LGHEVTGVDIDQEKVDKLNKGKSPIYE-PGLDELLAKALAAGRLRAT-TDYED--- 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHh---cCCeEEEEECCHHHHHHhhcCCCCCCC-CCHHHHHHHhhhcCCeEEE-CCHHH---
Confidence 3799999999877653 3443 4889999999998876543210 00 111 1234432 22222
Q ss_pred CCCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 190 ALKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 190 ~l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.....|+||++--.+. +...-..+++.+.+.+++|.+++..+
T Consensus 73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 1347899987653211 11234667788888999998888766
No 360
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=94.92 E-value=0.25 Score=47.42 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=64.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-------ccccCcCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-------IMNVSSAL 191 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-------a~~l~~~l 191 (318)
.++.+||..|+|++|..++.+|+. .|+ +|++++.+++..+.+++ .|...-+.....+ +.++. ..
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~-----~g~~~vi~~~~~~~~~~~~~i~~~~-~~ 247 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELARE-----FGADATIDIDELPDPQRRAIVRDIT-GG 247 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH-----cCCCeEEcCcccccHHHHHHHHHHh-CC
Confidence 378899999999999999999986 488 99999999877666643 3331111111111 11111 22
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..+|+|+-.. | . ...+....+.|+++|+++.-.
T Consensus 248 ~~~d~vid~~--g-~----~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 248 RGADVVIEAS--G-H----PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCcEEEECC--C-C----hHHHHHHHHHhccCCEEEEEc
Confidence 3699888543 1 0 235666779999999998655
No 361
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.90 E-value=0.098 Score=50.65 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=65.4
Q ss_pred CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCC---CCcc
Q 021008 120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL---KDYE 195 (318)
Q Consensus 120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l---~~fD 195 (318)
.++++||..| +|..|..++.||+.+ |++++.+--+++-.+.++++ |-..-+.+...|..+-..++ ..+|
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~l-----GAd~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKEL-----GADHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhc-----CCCEEEcCCcccHHHHHHHHcCCCCce
Confidence 6689999999 888999999999974 76766666776555555543 33344555555544321111 2699
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+|+-. +| ...+....+.|++||+++.-..
T Consensus 214 vv~D~--vG------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 214 VVLDT--VG------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EEEEC--CC------HHHHHHHHHHhccCCEEEEEec
Confidence 99943 32 2345556788999999887654
No 362
>PRK08655 prephenate dehydrogenase; Provisional
Probab=94.88 E-value=0.12 Score=52.12 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=56.5
Q ss_pred CEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 123 TKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 123 ~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
++|+.|| +|.+|.+.....+. .|..|+++|.+++... +.... .|. .+ ..|..+ .....|+|+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~--~G~~V~v~~r~~~~~~---~~a~~-~gv----~~-~~~~~e---~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE--KGFEVIVTGRDPKKGK---EVAKE-LGV----EY-ANDNID---AAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH--CCCEEEEEECChHHHH---HHHHH-cCC----ee-ccCHHH---HhccCCEEEEec
Confidence 3799998 78777665444433 4789999999986642 22233 232 21 122222 234689999876
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+...-..+++++...++||..++-
T Consensus 67 ----p~~~~~~vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 67 ----PINVTEDVIKEVAPHVKEGSLLMD 90 (437)
T ss_pred ----CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 334556788999999999886543
No 363
>PRK10083 putative oxidoreductase; Provisional
Probab=94.86 E-value=0.1 Score=49.35 Aligned_cols=100 Identities=12% Similarity=0.030 Sum_probs=63.1
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cCcCCCCccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VSSALKDYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~~~l~~fD~ 196 (318)
..++++|+..|+|++|..++.+|+.. .|+ .|+++|.+++..+.++++ |...-+.....+..+ +...-.++|+
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~-~G~~~v~~~~~~~~~~~~~~~~-----Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGV-YNVKAVIVADRIDERLALAKES-----GADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHh-----CCcEEecCccccHHHHHhcCCCCCCE
Confidence 36788999999999999999999842 277 488899999888887654 221111111111111 1111013556
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+-.. | . ...+.+..+.|++||+++.-.
T Consensus 232 vid~~--g----~-~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 232 IIDAA--C----H-PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 66433 1 1 235677789999999998765
No 364
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.83 E-value=0.3 Score=48.56 Aligned_cols=98 Identities=11% Similarity=0.126 Sum_probs=63.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD 195 (318)
...++|+.+|+|.+|.+......+ .|..|+.+|.|++.++..++.. ..+.++.||+.+.. .....+|
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~--~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEK--EGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCCHHHHHhcCCccCC
Confidence 346899999999877764443332 3889999999999887765432 34678899998631 2344788
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.|++.. +.....-+...+++.+.+. .++++.
T Consensus 300 ~vi~~~----~~~~~n~~~~~~~~~~~~~-~ii~~~ 330 (453)
T PRK09496 300 AFIALT----NDDEANILSSLLAKRLGAK-KVIALV 330 (453)
T ss_pred EEEECC----CCcHHHHHHHHHHHHhCCC-eEEEEE
Confidence 887543 1123333444556667665 455544
No 365
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=94.80 E-value=0.24 Score=46.40 Aligned_cols=92 Identities=18% Similarity=0.114 Sum_probs=64.5
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..++.+||..|+|.+|..++.+|+. .|++|++++.+++..+.++++ |....+.+ .+. .....+|+++
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~~-----g~~~~~~~-----~~~-~~~~~~d~vi 219 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARRL-----GVETVLPD-----EAE-SEGGGFDVVV 219 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHc-----CCcEEeCc-----ccc-ccCCCCCEEE
Confidence 3678999999999999999999986 499999999999888777652 33211111 111 1224699888
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
-.. | . ...+....+.++++|.++..
T Consensus 220 d~~--g----~-~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 220 EAT--G----S-PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ECC--C----C-hHHHHHHHHHhhcCCEEEEE
Confidence 543 1 1 23566677899999999873
No 366
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.80 E-value=0.12 Score=41.51 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+++||.||.|+.+...+.... ..|++|+-+..+. .... +++++..-.. ..++..+|+|+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll--~~gA~v~vis~~~---~~~~----------~~i~~~~~~~---~~~l~~~~lV~~ 66 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLL--EAGAKVTVISPEI---EFSE----------GLIQLIRREF---EEDLDGADLVFA 66 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHC--CCTBEEEEEESSE---HHHH----------TSCEEEESS----GGGCTTESEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEECCch---hhhh----------hHHHHHhhhH---HHHHhhheEEEe
Confidence 47899999999977666655443 3589999998887 1111 3455554333 234568999996
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc-cccccc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA-RAFLYP 241 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~-r~~lYP 241 (318)
+.- +.+ +-+.+++..+.-|.++-...++. ..|..|
T Consensus 67 at~---d~~----~n~~i~~~a~~~~i~vn~~D~p~~~dF~~P 102 (103)
T PF13241_consen 67 ATD---DPE----LNEAIYADARARGILVNVVDDPELCDFIFP 102 (103)
T ss_dssp -SS----HH----HHHHHHHHHHHTTSEEEETT-CCCCSEE--
T ss_pred cCC---CHH----HHHHHHHHHhhCCEEEEECCCcCCCeEEcC
Confidence 651 222 33444455554455554443332 235544
No 367
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=94.79 E-value=0.15 Score=48.20 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=65.9
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-cc-ccccCcCCCCccE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TD-IMNVSSALKDYEV 196 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gD-a~~l~~~l~~fD~ 196 (318)
..++.+||..|+|++|..++.+|+.. .|++|++++-+++..+.+++ .|...-+.... .+ ...+....+.+|.
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~~~~~~~~~-----~g~~~v~~~~~~~~~~~~v~~~~~~~d~ 233 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDINDDKLALAKE-----VGADLTINSKRVEDVAKIIQEKTGGAHA 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHH-----cCCcEEecccccccHHHHHHHhcCCCcE
Confidence 36789999999999999999999852 48999999999988777754 33311111100 01 0111111125887
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++++.. . ...+....+.++++|.++.-.
T Consensus 234 vi~~~~---~----~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 234 AVVTAV---A----KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred EEEeCC---C----HHHHHHHHHhccCCCEEEEEe
Confidence 776652 1 245788889999999988654
No 368
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.78 E-value=0.23 Score=52.04 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=68.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEE
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVV 197 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V 197 (318)
..+|+.+|.|..|......-++ .|..++.+|.|++.++.+++ .| ...+.||+.+.. ...++.|.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~-----~g----~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRK-----YG----YKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh-----CC----CeEEEeeCCCHHHHHhcCCccCCEE
Confidence 4689999999988765443333 48899999999999888764 22 467899998732 233478877
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCC
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAH 233 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~ 233 (318)
++.- +..+....+-...|.+.|...++.|..+
T Consensus 469 v~~~----~d~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 469 VITC----NEPEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEEe----CCHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 6543 2234444455566789999999998743
No 369
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.68 E-value=0.11 Score=49.25 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=60.9
Q ss_pred CCEEEEEcc-CCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCCcc
Q 021008 122 PTKIAFIGS-GPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKDYE 195 (318)
Q Consensus 122 ~~rVL~IGs-Gplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~fD 195 (318)
+++||..|. |++|..++.+|+. .|+ +|++++.+++..+.+++. .|...-+.....+.. ++. . ..+|
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~--~G~~~Vi~~~~s~~~~~~~~~~----lGa~~vi~~~~~~~~~~i~~~~-~-~gvd 226 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRL--LGCSRVVGICGSDEKCQLLKSE----LGFDAAINYKTDNVAERLRELC-P-EGVD 226 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHh----cCCcEEEECCCCCHHHHHHHHC-C-CCce
Confidence 389999997 8899999999986 488 799999998777666542 333221111111111 121 1 3699
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+-.. + .. .+....+.|++||+++.-.
T Consensus 227 ~vid~~--g----~~--~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 227 VYFDNV--G----GE--ISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEEECC--C----cH--HHHHHHHHhccCCEEEEEe
Confidence 888432 2 11 2466788999999998643
No 370
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.66 E-value=0.25 Score=51.16 Aligned_cols=123 Identities=9% Similarity=0.003 Sum_probs=77.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEE
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVF 198 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~ 198 (318)
.+|+.+|+|+.|.......++ .|..|+.||.|++.++.+++ .....+.||+.+-. ...++.|.|+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~---------~g~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRE---------RGIRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH---------CCCeEEEcCCCCHHHHHhcCccccCEEE
Confidence 799999999987765443332 37899999999998887763 23678999999731 2344788777
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCCCccccCCcEEEEEEcCchhHHHHHH
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVVDPSDLLGFEVLSVFHPTDEVINSVV 268 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v~~~~l~gf~~~~~~~p~~~VvNsvv 268 (318)
++-- + .+....+-...+...|...++.|-.+.... +.++....-.++.|...+.+.+.
T Consensus 487 v~~~---~-~~~~~~iv~~~~~~~~~~~iiar~~~~~~~--------~~l~~~Gad~vv~p~~~~a~~i~ 544 (558)
T PRK10669 487 LTIP---N-GYEAGEIVASAREKRPDIEIIARAHYDDEV--------AYITERGANQVVMGEREIARTML 544 (558)
T ss_pred EEcC---C-hHHHHHHHHHHHHHCCCCeEEEEECCHHHH--------HHHHHcCCCEEEChHHHHHHHHH
Confidence 5531 2 222222333456678999998886432111 11121223456788777765544
No 371
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.64 E-value=0.11 Score=52.99 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=60.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++|+.||.|.+|......++. .|++|+.+|+|+.....|.. .|. ++ .+..+ .+...|+|++
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a--~Ga~ViV~e~dp~~a~~A~~-----~G~----~~--~~lee---ll~~ADIVI~ 315 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRG--FGARVVVTEIDPICALQAAM-----EGY----QV--VTLED---VVETADIFVT 315 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchhHHHHHh-----cCc----ee--ccHHH---HHhcCCEEEE
Confidence 588999999999999888777775 49999999999865433321 121 22 12222 2347999997
Q ss_pred ccccCCChhHHHHHH-HHHHHhccCCeEEEEE
Q 021008 200 AALVGMDKDEKIRVI-DHLAKYMAPGALLMLR 230 (318)
Q Consensus 200 aalvgm~~~~k~~vl-~~l~r~LkpGg~lv~r 230 (318)
+.. . ..++ .+..+.||||++|+--
T Consensus 316 atG------t-~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 316 ATG------N-KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred CCC------c-ccccCHHHHhccCCCcEEEEc
Confidence 641 1 2344 3667899999988653
No 372
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.63 E-value=0.1 Score=45.12 Aligned_cols=90 Identities=22% Similarity=0.244 Sum_probs=54.2
Q ss_pred CEEEEEccCCChHHHHHHHHhCC-CCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHL-TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~-~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
++|.+||.|.+|... |+++. .|..|+++|++++..+... .. | ++ .+.+..++. ...|+|++.-
T Consensus 2 ~~Ig~IGlG~mG~~~---a~~L~~~g~~v~~~d~~~~~~~~~~---~~--g----~~-~~~s~~e~~---~~~dvvi~~v 65 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAM---ARNLAKAGYEVTVYDRSPEKAEALA---EA--G----AE-VADSPAEAA---EQADVVILCV 65 (163)
T ss_dssp BEEEEE--SHHHHHH---HHHHHHTTTEEEEEESSHHHHHHHH---HT--T----EE-EESSHHHHH---HHBSEEEE-S
T ss_pred CEEEEEchHHHHHHH---HHHHHhcCCeEEeeccchhhhhhhH---Hh--h----hh-hhhhhhhHh---hcccceEeec
Confidence 489999999766542 32211 4899999999996655543 32 2 22 233333432 2569998653
Q ss_pred ccCCChhHHHHHHHH--HHHhccCCeEEEEEc
Q 021008 202 LVGMDKDEKIRVIDH--LAKYMAPGALLMLRS 231 (318)
Q Consensus 202 lvgm~~~~k~~vl~~--l~r~LkpGg~lv~r~ 231 (318)
. +...-..++.. +...|++|.+++--+
T Consensus 66 ~---~~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 66 P---DDDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp S---SHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred c---cchhhhhhhhhhHHhhccccceEEEecC
Confidence 2 33555678888 889999988887655
No 373
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=94.58 E-value=0.19 Score=47.19 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=63.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.++.+||..|+|++|..++.+|+. .|.+|++++.+++..+.+++ .|.. .++..+ +. ..+.+|+++.
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~~-----~g~~---~~~~~~--~~--~~~~vD~vi~ 231 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARY--QGAEVFAFTRSGEHQELARE-----LGAD---WAGDSD--DL--PPEPLDAAII 231 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEcCChHHHHHHHH-----hCCc---EEeccC--cc--CCCcccEEEE
Confidence 678899999999999999999986 48999999999876666543 3321 111111 11 1236898875
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+. ....++++.+.|++||+++...
T Consensus 232 ~~~-------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 232 FAP-------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred cCC-------cHHHHHHHHHHhhcCCEEEEEc
Confidence 431 1246788899999999998754
No 374
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.57 E-value=0.15 Score=49.90 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=55.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL 202 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal 202 (318)
++|.+||+|.+|.+.....++ .|..|..+|.|+...+.++.. . .|..+. ... ++.......|+|+++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~--~G~~v~i~~~~~~~~~~~~a~--~-~~~~~~---~~~---~~~~~~~~aDlVilav- 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKA--AGPDVFIIGYDPSAAQLARAL--G-FGVIDE---LAA---DLQRAAAEADLIVLAV- 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHh--cCCCeEEEEeCCCHHHHHHHh--c-CCCCcc---ccc---CHHHHhcCCCEEEEeC-
Confidence 479999999988775544443 355666677776655544321 1 222221 111 2212234789999887
Q ss_pred cCCChhHHHHHHHHHHH-hccCCeEEE
Q 021008 203 VGMDKDEKIRVIDHLAK-YMAPGALLM 228 (318)
Q Consensus 203 vgm~~~~k~~vl~~l~r-~LkpGg~lv 228 (318)
+......+++++.+ .++||.++.
T Consensus 69 ---P~~~~~~vl~~l~~~~l~~~~ivt 92 (359)
T PRK06545 69 ---PVDATAALLAELADLELKPGVIVT 92 (359)
T ss_pred ---CHHHHHHHHHHHhhcCCCCCcEEE
Confidence 44567888999987 488885443
No 375
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.57 E-value=0.54 Score=45.41 Aligned_cols=105 Identities=18% Similarity=0.283 Sum_probs=61.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-HHHHHHHHhhcCCCCCCCeEEEE-ccccccCcCCCCccEEE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-ANSKALSLVSSDPDLSTRMFFHT-TDIMNVSSALKDYEVVF 198 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-ai~~Ar~~~~~~~gl~~ri~f~~-gDa~~l~~~l~~fD~V~ 198 (318)
+..||..||+|..|.+..+.+........+.-+|++++ +...+..+... ..+.....+.. +|..+ +.+.|+|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~-~~~~~~~~v~~~~dy~~----~~~adivv 76 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHG-SAFLKNPKIEADKDYSV----TANSKVVI 76 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHh-hccCCCCEEEECCCHHH----hCCCCEEE
Confidence 44699999999999887665543333567999999875 33445555443 22222224443 55433 45789998
Q ss_pred ecccc----CCCh----hHHHH----HHHHHHHhccCCeEEEEEc
Q 021008 199 LAALV----GMDK----DEKIR----VIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalv----gm~~----~~k~~----vl~~l~r~LkpGg~lv~r~ 231 (318)
+.+-. ||+. ..-.+ +...+.+. .|.|.+++-+
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 86544 4433 12223 33444444 5677766644
No 376
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.55 E-value=0.37 Score=47.89 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=63.9
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----cCCCCccEEE
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----SALKDYEVVF 198 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----~~l~~fD~V~ 198 (318)
++|+.+|+|.+|......... .|..|+.+|.|++.++..++ . ..+.++.||+.+.. .....+|.|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~--~g~~v~vid~~~~~~~~~~~---~-----~~~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSG--ENNDVTVIDTDEERLRRLQD---R-----LDVRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEECCHHHHHHHHh---h-----cCEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 479999999877775544332 48899999999987766543 2 23678889987521 1245789887
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.. +.......+...++.+.|.-.++++.
T Consensus 71 ~~~----~~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 71 AVT----DSDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred Eec----CChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 654 22344455666677776777777764
No 377
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.52 E-value=0.054 Score=56.03 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID 156 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid 156 (318)
..+++|+.||+||.|+++...+++ .|.+|+.+|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecC
Confidence 567899999999999999888876 48899999954
No 378
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.51 E-value=0.18 Score=48.19 Aligned_cols=101 Identities=11% Similarity=0.058 Sum_probs=54.9
Q ss_pred CCCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
....+|+.||+|.+|.+- ..|++ .|..|+-+..++. +.-++.-........+..+....+.+-+.....||+|+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 345799999999876653 33443 4788999988863 21111100000011112221111122222345799999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
++-=. .+-..+++.+...++|++.++.
T Consensus 78 lavK~----~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 78 VGLKT----TANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EEecC----CChHhHHHHHhhhcCCCCEEEE
Confidence 87411 2234677788888999887654
No 379
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.50 E-value=0.11 Score=49.58 Aligned_cols=91 Identities=7% Similarity=0.013 Sum_probs=56.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++|+.||.|.+|.+....++.+ |++|+.++.+++..+.+. . .|. ..+ +..++...+.++|+|+.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~----~-~g~----~~~--~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARIT----E-MGL----IPF--PLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----H-CCC----eee--cHHHHHHHhccCCEEEE
Confidence 4679999999999888877766653 899999999987654442 2 222 111 11233333458999998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..-.++ +-++..+.|+||+.+ ++-
T Consensus 216 t~P~~i-------i~~~~l~~~k~~ali-IDl 239 (287)
T TIGR02853 216 TIPALV-------LTADVLSKLPKHAVI-IDL 239 (287)
T ss_pred CCChHH-------hCHHHHhcCCCCeEE-EEe
Confidence 652111 112345678886544 443
No 380
>PHA01634 hypothetical protein
Probab=94.47 E-value=0.25 Score=42.29 Aligned_cols=73 Identities=7% Similarity=0.189 Sum_probs=51.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..+++|++||.+ .|-|+|+++- .|| .|++++.++...+..++..+. ...=++..-. .+.+...+.||+..
T Consensus 27 vk~KtV~dIGA~-iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~-nnI~DK~v~~----~eW~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGAD-CGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAY-FNICDKAVMK----GEWNGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCC-ccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhh-heeeeceeec----ccccccCCCcceEE
Confidence 689999999998 8999999985 466 699999999999999887664 2111111100 13444555788766
Q ss_pred ecc
Q 021008 199 LAA 201 (318)
Q Consensus 199 ~aa 201 (318)
++.
T Consensus 98 iDC 100 (156)
T PHA01634 98 MDC 100 (156)
T ss_pred EEc
Confidence 543
No 381
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.44 E-value=0.2 Score=45.34 Aligned_cols=106 Identities=12% Similarity=0.167 Sum_probs=55.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++||.||+|..|...+..... .|+.|+-|+.+. .+...+++.. .++.+...... +.++..+|+|+.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~~--~~~l~~l~~~-----~~i~~~~~~~~--~~~l~~adlVia 76 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPEL--TENLVKLVEE-----GKIRWKQKEFE--PSDIVDAFLVIA 76 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCC--CHHHHHHHhC-----CCEEEEecCCC--hhhcCCceEEEE
Confidence 578999999999877665432222 488888886432 2222333332 34666543222 234568898886
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccCC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPVV 243 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~v 243 (318)
+-- +.+.-..+. +. .+.+..+-+-+......|..|.+
T Consensus 77 aT~---d~elN~~i~-~~---a~~~~lvn~~d~~~~~~f~~Pa~ 113 (202)
T PRK06718 77 ATN---DPRVNEQVK-ED---LPENALFNVITDAESGNVVFPSA 113 (202)
T ss_pred cCC---CHHHHHHHH-HH---HHhCCcEEECCCCccCeEEEeeE
Confidence 531 223333333 22 23444333333333345887754
No 382
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=94.44 E-value=0.26 Score=46.91 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=63.4
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcC-CCCccEE
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA-LKDYEVV 197 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~-l~~fD~V 197 (318)
..++.+|+..|+|++|..++.+|+. .|++|++++.+++..+.++++ |. +.+ +...+ .+.... .+.+|+|
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~-----g~-~~v-i~~~~-~~~~~~~~~~~d~v 236 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKA--LGAEVTAFSRSPSKKEDALKL-----GA-DEF-IATKD-PEAMKKAAGSLDLI 236 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHc-----CC-cEE-ecCcc-hhhhhhccCCceEE
Confidence 3678899999999999999999986 488999999999877776542 21 111 11110 111011 2479998
Q ss_pred EeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 198 FLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+-.. + . ...+....+.|+++|+++.-.
T Consensus 237 ~~~~--g----~-~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 237 IDTV--S----A-SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EECC--C----C-cchHHHHHHHhcCCCEEEEEe
Confidence 8433 1 1 124566778999999988754
No 383
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.42 E-value=0.028 Score=49.48 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=59.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++|..||.|.+|-....+++.+ |++|+++|.++..-..+.. ..+++ .+..++ +...|+|++
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~---------~~~~~--~~l~el---l~~aDiv~~ 97 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE---------FGVEY--VSLDEL---LAQADIVSL 97 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH---------TTEEE--SSHHHH---HHH-SEEEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc---------cccee--eehhhh---cchhhhhhh
Confidence 5789999999999998888888764 9999999999987662221 11222 233333 236898886
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
..-. +.+.+.-+=++..+.||||++| ++.++|
T Consensus 98 ~~pl--t~~T~~li~~~~l~~mk~ga~l-vN~aRG 129 (178)
T PF02826_consen 98 HLPL--TPETRGLINAEFLAKMKPGAVL-VNVARG 129 (178)
T ss_dssp -SSS--STTTTTSBSHHHHHTSTTTEEE-EESSSG
T ss_pred hhcc--ccccceeeeeeeeeccccceEE-Eeccch
Confidence 5421 2222222333445899998866 555554
No 384
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.37 E-value=0.22 Score=46.10 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=54.6
Q ss_pred CEEEEEccCCChHHHHH-HHHh-CCCCcEEEEE-eCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 123 TKIAFIGSGPLPLTSIV-LAIN-HLTTTCFDNY-DIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~-LA~~-~~~ga~V~gv-Did~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
.||.+||+|.+|.+-.. |.+. +.+..+|+.+ |.+++..+.+. + .|. .. ..+..++ ....|+||+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~----~-~g~----~~-~~~~~e~---~~~aDvVil 67 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ----S-LGV----KT-AASNTEV---VKSSDVIIL 67 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH----H-cCC----EE-eCChHHH---HhcCCEEEE
Confidence 47999999988765322 2221 1122378888 99987654432 2 232 22 2232222 236899997
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+- +.....+++..+...++||..++
T Consensus 68 ~v----~~~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 68 AV----KPQVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred EE----CcHHHHHHHHHHHhhcCCCCEEE
Confidence 75 34567788888888888887665
No 385
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.37 E-value=0.38 Score=48.07 Aligned_cols=102 Identities=30% Similarity=0.337 Sum_probs=68.6
Q ss_pred CEEEEEccCCChHH-HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc--CCCC---------CCCeEEEEccccccCcC
Q 021008 123 TKIAFIGSGPLPLT-SIVLAINHLTTTCFDNYDIDPSANSKALSLVSS--DPDL---------STRMFFHTTDIMNVSSA 190 (318)
Q Consensus 123 ~rVL~IGsGplp~t-ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~--~~gl---------~~ri~f~~gDa~~l~~~ 190 (318)
+||..||+|=.|++ +.+||+ -|-.|+++|||++-++.=++-..- .+|+ ..|.+|-+ | ....
T Consensus 1 MkI~viGtGYVGLv~g~~lA~---~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d---~~~a 73 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE---LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-D---YEEA 73 (414)
T ss_pred CceEEECCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-C---HHHH
Confidence 48999999988875 477886 388999999999998876432110 1222 34566642 2 2223
Q ss_pred CCCccEEEeccccC------CChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 191 LKDYEVVFLAALVG------MDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 191 l~~fD~V~~aalvg------m~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
....|++|++---+ .|..-=..+.+++...++...++++.|
T Consensus 74 ~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 74 VKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred HhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 34678998764321 133444678888888888888888877
No 386
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.33 E-value=0.25 Score=50.45 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=62.9
Q ss_pred CEEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 123 TKIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 123 ~rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
.+|.+||.|.+|.... .|++ .|.+|+++|++++.++...+.... .|. .+. ...+..++...+...|+|++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~---~G~~V~v~dr~~~~~~~l~~~~~~-~g~--~i~-~~~s~~e~v~~l~~~d~Iil~v 74 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIAS---RGFKISVYNRTYEKTEEFVKKAKE-GNT--RVK-GYHTLEELVNSLKKPRKVILLI 74 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhhhh-cCC--cce-ecCCHHHHHhcCCCCCEEEEEe
Confidence 4799999998876642 2332 488999999999887766543332 232 221 2334444444444578888764
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
. +...-..+++.+...|+||-++ +..
T Consensus 75 ~---~~~~v~~vi~~l~~~L~~g~iI-ID~ 100 (470)
T PTZ00142 75 K---AGEAVDETIDNLLPLLEKGDII-IDG 100 (470)
T ss_pred C---ChHHHHHHHHHHHhhCCCCCEE-EEC
Confidence 2 3345567889999999988665 444
No 387
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.32 E-value=0.19 Score=47.79 Aligned_cols=97 Identities=9% Similarity=0.020 Sum_probs=65.1
Q ss_pred cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-ccc----ccCcCCC
Q 021008 119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIM----NVSSALK 192 (318)
Q Consensus 119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~----~l~~~l~ 192 (318)
..++++||..|. |++|..++.+|+. .|++|++++.+++..+.+++. .|...-+.+... |.. .+. . .
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~--~G~~Vi~~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~i~~~~-~-~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKL--KGCYVVGSAGSDEKVDLLKNK----LGFDDAFNYKEEPDLDAALKRYF-P-N 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHh----cCCceeEEcCCcccHHHHHHHhC-C-C
Confidence 368899999997 8899999999986 499999999999877776652 232111111111 111 111 1 3
Q ss_pred CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++|+|+-. +| . ..+....+.|++||+++.-.
T Consensus 221 gvd~v~d~--~g----~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDN--VG----G--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEEC--CC----H--HHHHHHHHHhccCcEEEEec
Confidence 78988843 22 1 35677789999999998654
No 388
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.22 E-value=0.087 Score=51.23 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=58.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++|..||.|.+|......++. .|.+|.++|.++.... ... .|. .+ .+..++ +...|+|++
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~-----~~~-~~~----~~--~~l~el---l~~aDiV~l 210 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAKG--FGMRILYYSRTRKPEA-----EKE-LGA----EY--RPLEEL---LRESDFVSL 210 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH--CCCEEEEECCCCChhh-----HHH-cCC----Ee--cCHHHH---HhhCCEEEE
Confidence 478999999999988776666654 3899999999875321 112 121 22 232232 347899997
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
..-. +.+.+.-+-++....||||++|+-
T Consensus 211 ~lP~--t~~T~~~i~~~~~~~mk~ga~lIN 238 (333)
T PRK13243 211 HVPL--TKETYHMINEERLKLMKPTAILVN 238 (333)
T ss_pred eCCC--ChHHhhccCHHHHhcCCCCeEEEE
Confidence 7522 333444444677889999987654
No 389
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.16 E-value=0.52 Score=46.97 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=47.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh-HHHHH-HHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP-SANSK-ALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~-~ai~~-Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.+++|+.+|+|+.|++......+ .|+.|+++|.++ +.++. ..++ .+ .+++++.+|..+ ...+.+|+|+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~~~~~~~~~~l-~~-----~~~~~~~~~~~~--~~~~~~d~vv 73 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEEDQLKEALEEL-GE-----LGIELVLGEYPE--EFLEGVDLVV 73 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchHHHHHHHHHH-Hh-----cCCEEEeCCcch--hHhhcCCEEE
Confidence 46899999999877765443333 499999999986 33222 2222 22 235677777765 2335799988
Q ss_pred ecccc
Q 021008 199 LAALV 203 (318)
Q Consensus 199 ~aalv 203 (318)
.+.-+
T Consensus 74 ~~~g~ 78 (450)
T PRK14106 74 VSPGV 78 (450)
T ss_pred ECCCC
Confidence 77644
No 390
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=94.13 E-value=0.28 Score=47.91 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=65.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc---c----ccccCcCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT---D----IMNVSSAL 191 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g---D----a~~l~~~l 191 (318)
.++.+||..|+|++|..++.+|+. .|+ .|++++.+++..+.+++ .|...-+..... + +.++. .-
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~--~G~~~vi~~~~~~~~~~~~~~-----~g~~~~v~~~~~~~~~~~~~v~~~~-~g 273 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKA--AGASKVIAFEISEERRNLAKE-----MGADYVFNPTKMRDCLSGEKVMEVT-KG 273 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH-----cCCCEEEcccccccccHHHHHHHhc-CC
Confidence 678899999999999999999986 477 79999999886666554 343211111110 1 11222 12
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..+|+|+-. .| .....+.+..+.|+++|+++.-.
T Consensus 274 ~gvDvvld~--~g----~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 274 WGADIQVEA--AG----APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCEEEEC--CC----CcHHHHHHHHHHHHcCCEEEEEC
Confidence 369988743 22 22346777889999999998754
No 391
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.13 E-value=0.36 Score=46.82 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=59.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHH--hhcCCCCCCCeEEEE-ccccccCcCCCCccE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSL--VSSDPDLSTRMFFHT-TDIMNVSSALKDYEV 196 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~--~~~~~gl~~ri~f~~-gDa~~l~~~l~~fD~ 196 (318)
+.+||..||+|.+|.+....+.. .| ..++-+|++++.. .++.+ .....-.+...++.. +|.. ++.+.|+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~--~gl~~i~LvDi~~~~~-~~~~ld~~~~~~~~~~~~~I~~~~d~~----~l~~aDi 77 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL--KNLGDVVLFDIVKNIP-QGKALDISHSNVIAGSNSKVIGTNNYE----DIAGSDV 77 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCCchh-hHHHHHHHhhhhccCCCeEEEECCCHH----HhCCCCE
Confidence 44799999999988877665442 45 4799999999853 22222 111011122344543 5543 3457899
Q ss_pred EEeccccC----C-------------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVG----M-------------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvg----m-------------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|++.+-++ + +.+-+.++.+.+.+.. |.|.+++-+
T Consensus 78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~s 128 (321)
T PTZ00082 78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVIT 128 (321)
T ss_pred EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 99866442 2 2233566666666555 555544433
No 392
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.11 E-value=0.44 Score=45.32 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=57.3
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH--hhcCCCCCCCeEEE-EccccccCcCCCCccEEEe
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL--VSSDPDLSTRMFFH-TTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~--~~~~~gl~~ri~f~-~gDa~~l~~~l~~fD~V~~ 199 (318)
+||..||+|.+|.+..........+ +|+-+|++++.. .+... .....-.....++. ++|.. +....|+|++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~-~~~~~dl~~~~~~~~~~~~i~~~~d~~----~~~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVP-QGKALDIAEAAPVEGFDTKITGTNDYE----DIAGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchh-HHHHHHHHhhhhhcCCCcEEEeCCCHH----HHCCCCEEEE
Confidence 5999999999887765554432123 999999999875 33222 11101011223333 23432 3357899998
Q ss_pred ccccCC------------ChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 200 AALVGM------------DKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 200 aalvgm------------~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
++-++. +.+.+.++++.+.+.. |.+.+++.
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~ 118 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVV 118 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 764421 1234666777776665 55654443
No 393
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.07 E-value=0.14 Score=49.81 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=62.6
Q ss_pred hcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEE-EccccccCcCCCCc
Q 021008 116 QHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFH-TTDIMNVSSALKDY 194 (318)
Q Consensus 116 ~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~-~gDa~~l~~~l~~f 194 (318)
++...++++|-.+|.|.+|--++.+|+.+ |.+|++||-+..-= ++.++. +|...=+.+. ..|...- ..+..
T Consensus 176 ~~g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kk---eea~~~-LGAd~fv~~~~d~d~~~~--~~~~~ 247 (360)
T KOG0023|consen 176 RSGLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKK---EEAIKS-LGADVFVDSTEDPDIMKA--IMKTT 247 (360)
T ss_pred HcCCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhH---HHHHHh-cCcceeEEecCCHHHHHH--HHHhh
Confidence 33447999999999999999999999975 99999999997332 333444 4443333332 2222211 11234
Q ss_pred cEEE--eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVF--LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~--~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|.+. +..+. ..-++.+.+.||++|++++-.
T Consensus 248 dg~~~~v~~~a-------~~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 248 DGGIDTVSNLA-------EHALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred cCcceeeeecc-------ccchHHHHHHhhcCCEEEEEe
Confidence 4322 12111 123455568999999998876
No 394
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=94.06 E-value=0.15 Score=49.34 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=64.9
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--c----ccccCcCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--D----IMNVSSAL 191 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--D----a~~l~~~l 191 (318)
..++.+||..|+|++|..++.+|+.. |+ .|++++.+++..+.++++ |...-+..... + +.++. .
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~v~~~~~~~~~~~~l~~~~-~- 251 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAA--GASRIIAVDINKDKFEKAKQL-----GATECINPRDQDKPIVEVLTEMT-D- 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHh-----CCCeecccccccchHHHHHHHHh-C-
Confidence 36789999999999999999999864 77 489999999887777553 32111111111 1 11222 2
Q ss_pred CCccEEEeccccCCChhHHHHHHHHHHHhcc-CCeEEEEEc
Q 021008 192 KDYEVVFLAALVGMDKDEKIRVIDHLAKYMA-PGALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalvgm~~~~k~~vl~~l~r~Lk-pGg~lv~r~ 231 (318)
+.+|+|+-.. | ....+....+.++ +||+++.-.
T Consensus 252 ~~~d~vid~~--g-----~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 252 GGVDYAFEVI--G-----SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCCcEEEECC--C-----CHHHHHHHHHHhccCCCEEEEEe
Confidence 3699988433 2 1345667788999 999998754
No 395
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=94.02 E-value=0.058 Score=52.14 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=70.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc--ccC---------
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM--NVS--------- 188 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~--~l~--------- 188 (318)
.+|.+++-+|.|-.|+.++..+.+ .|+.|+..|.-+..-+.-+.+-++....+ .-+ .++.+ +++
T Consensus 162 v~pA~vlv~G~Gvagl~aiata~~--lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~-~ee--~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 162 VSPAKVLVIGAGVAGLAAIATAVR--LGAIVTARDLRMFKKEQVESLGAKFLAVE-DEE--SAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred ccchhhhhhhHHHHHHHHHHHHhh--cceEEehhhhhhHHhhhhhhccccccccc-ccc--cCCCccccCCHHHHHHHHH
Confidence 678999999999999999988875 59999999998866544443333211111 111 33332 222
Q ss_pred ---cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 189 ---SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 189 ---~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
...+++|+|+..++++--+.+| -+-+++..-||||.+++
T Consensus 237 ~~a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViV 278 (356)
T COG3288 237 LVAEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIV 278 (356)
T ss_pred HHHHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEE
Confidence 1235899999999995433444 48888999999998764
No 396
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.01 E-value=0.19 Score=43.36 Aligned_cols=101 Identities=22% Similarity=0.303 Sum_probs=61.9
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc---C--CCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS---D--PDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---~--~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
+|..||+|..|.+.-.+... -|.+|+-...+++.++.=++.-.. . ..+..++.+ +.|..+ .....|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~---a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEE---ALEDADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHH---HHTT-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHH---HhCcccEEE
Confidence 68999999988776555443 478999999999766654432221 0 112345554 344433 234679888
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA 235 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~ 235 (318)
++- +...-..+++++..++++|..++.- ..|+
T Consensus 75 iav----Ps~~~~~~~~~l~~~l~~~~~ii~~-~KG~ 106 (157)
T PF01210_consen 75 IAV----PSQAHREVLEQLAPYLKKGQIIISA-TKGF 106 (157)
T ss_dssp E-S-----GGGHHHHHHHHTTTSHTT-EEEET-S-SE
T ss_pred ecc----cHHHHHHHHHHHhhccCCCCEEEEe-cCCc
Confidence 764 3344567999999999888777653 3443
No 397
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.01 E-value=0.44 Score=43.32 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=64.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc-ccccc------CcCC-
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT-DIMNV------SSAL- 191 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g-Da~~l------~~~l- 191 (318)
.++.+|||+|+.|+..|-... ++-.|..-|.|||+=+ +. ....++++.+ |+.|- -+.+
T Consensus 68 ~p~~~VlD~G~APGsWsQVav-qr~~p~g~v~gVDllh---------~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAV-QRVNPNGMVLGVDLLH---------IE----PPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHH-HhhCCCceEEEEeeee---------cc----CCCCcccccccccCCHHHHHHHHHhCC
Confidence 789999999999987775433 3345889999999843 11 1245566666 66651 1112
Q ss_pred -CCccEEEecccc---CCChhHHHHHHHHH-------HHhccCCeEEEEEcCCC
Q 021008 192 -KDYEVVFLAALV---GMDKDEKIRVIDHL-------AKYMAPGALLMLRSAHG 234 (318)
Q Consensus 192 -~~fD~V~~aalv---gm~~~~k~~vl~~l-------~r~LkpGg~lv~r~~~g 234 (318)
...|+|+.+-.- |....+-.+.++-+ ...++|+|.+++.--.|
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 267888855322 33344555555555 34568999999887555
No 398
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.98 E-value=0.21 Score=49.36 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=79.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC-CccEEEec
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK-DYEVVFLA 200 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~-~fD~V~~a 200 (318)
+.+|+|-=|| .|.=+|.+|.+. +...|+.=||||+|++..+++++. ..+.....+..|+..+..... .||+|=++
T Consensus 53 ~~~v~Dalsa-tGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~--N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSA-TGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRL--NSGEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccc-cchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHh--cCcccceeecchHHHHHHhcCCCccEEecC
Confidence 8999999998 589999999863 344899999999999999999986 233445555589887765543 89998877
Q ss_pred cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-+ ....-+++...+.++.||.|.+.-
T Consensus 129 PF-----GSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PF-----GSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC-----CCCchHHHHHHHHhhcCCEEEEEe
Confidence 54 344668888899999999998855
No 399
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.97 E-value=0.29 Score=46.00 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=63.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc----CcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV----SSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l----~~~l~~f 194 (318)
.++.+||.+|+|.+|..++.+|+.. |++ |+.++.+++..+.++++ |.. .++..+-.+. ......+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKL-----GAT---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHh-----CCe---EEecCCCCCHHHHHHhcCCCC
Confidence 6789999999988888999999864 877 89999998877766442 322 2221111110 0122469
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+++-.. + ....+....+.|+++|+++.-.
T Consensus 228 d~v~~~~--~-----~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 228 DVVIEAT--G-----VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred cEEEECC--C-----ChHHHHHHHHHHhcCCEEEEEe
Confidence 9988432 1 1346777789999999998754
No 400
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.95 E-value=0.24 Score=49.44 Aligned_cols=71 Identities=23% Similarity=0.232 Sum_probs=53.6
Q ss_pred CEEEEEccCCChHHHHHH-HHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---cCCCCccEEE
Q 021008 123 TKIAFIGSGPLPLTSIVL-AINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYEVVF 198 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~L-A~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD~V~ 198 (318)
++||.||||..|-+.... |++ ...+|+..|.+++..+++..... .++++++-|+.+.+ .-++++|+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~------~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIG------GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhcc------ccceeEEecccChHHHHHHHhcCCEEE
Confidence 689999999988877665 543 23899999999977777654322 38999999998753 3345889999
Q ss_pred ecc
Q 021008 199 LAA 201 (318)
Q Consensus 199 ~aa 201 (318)
..+
T Consensus 74 n~~ 76 (389)
T COG1748 74 NAA 76 (389)
T ss_pred EeC
Confidence 776
No 401
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.93 E-value=0.21 Score=48.37 Aligned_cols=104 Identities=25% Similarity=0.285 Sum_probs=69.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcC------CC-CCC-----CeEEEEccccccCc
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSD------PD-LST-----RMFFHTTDIMNVSS 189 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~------~g-l~~-----ri~f~~gDa~~l~~ 189 (318)
-++|..||+|.+|-.-...+.. -|..|+-+|+++++++.+++.+.+. .| +.. .+..+.. ..++ .
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~--~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~-~~~~-~ 78 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL--AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITP-TTDL-A 78 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh--cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc-cCch-h
Confidence 4689999999987654333322 4689999999999999987665541 01 110 0111100 0111 1
Q ss_pred CCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 190 ALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 190 ~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+++..|+|+=+..- +.+-|.++|+++-++++|++.|.-+.
T Consensus 79 ~l~~~DlVIEAv~E--~levK~~vf~~l~~~~~~~aIlASNT 118 (307)
T COG1250 79 ALKDADLVIEAVVE--DLELKKQVFAELEALAKPDAILASNT 118 (307)
T ss_pred HhccCCEEEEeccc--cHHHHHHHHHHHHhhcCCCcEEeecc
Confidence 44578999855532 67899999999999999999998766
No 402
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.92 E-value=0.21 Score=47.92 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=53.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhc---CCC--CCCCeEEEEccccccCcCCCCcc
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSS---DPD--LSTRMFFHTTDIMNVSSALKDYE 195 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~---~~g--l~~ri~f~~gDa~~l~~~l~~fD 195 (318)
...||.+||+|.+|..-.....+ .|..|+.++.+++..+..++.... ..| +..++.. ..|..+ .....|
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~--~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~-~~~~~e---~~~~aD 76 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAAS--KGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYP-TADPEE---ALAGAD 76 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE-eCCHHH---HHcCCC
Confidence 35699999999987664333222 378999999999876665543211 001 1111221 222222 234689
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+|++.- + ...++++.+.++|+..++
T Consensus 77 ~Vi~~v----~----~~~~~~v~~~l~~~~~vi 101 (328)
T PRK14618 77 FAVVAV----P----SKALRETLAGLPRALGYV 101 (328)
T ss_pred EEEEEC----c----hHHHHHHHHhcCcCCEEE
Confidence 888764 1 112455667788876554
No 403
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.91 E-value=0.15 Score=48.24 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=63.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f 194 (318)
.++.+||..|+|++|..++.+|+.+ |. .|++++.+++..+.++++ |...-+.....+. ..+. ....+
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~--g~~~v~~~~~~~~~~~~~~~~-----g~~~vi~~~~~~~~~~i~~~~-~~~~~ 237 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLL--GAARIIAVDSNPERLDLAKEA-----GATDIINPKNGDIVEQILELT-GGRGV 237 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHh-----CCcEEEcCCcchHHHHHHHHc-CCCCC
Confidence 5788999999988899999999864 75 889999998877776653 2111111111111 1111 22469
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+++-.. + . ...+....+.|+++|+++.-.
T Consensus 238 d~vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 238 DCVIEAV--G----F-EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cEEEEcc--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 9888432 1 1 246777789999999988653
No 404
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=93.91 E-value=0.29 Score=52.17 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=59.5
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL 202 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal 202 (318)
++|.+||+|.+|.+.....++.....+|+++|.+++..+.+++ .|... . .. .++.......|+|+++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~-----~g~~~--~-~~---~~~~~~~~~aDvVilav- 71 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS-----LGVID--R-GE---EDLAEAVSGADVIVLAV- 71 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH-----CCCCC--c-cc---CCHHHHhcCCCEEEECC-
Confidence 6899999999887765554432112579999999988777643 23211 0 01 12212234789999876
Q ss_pred cCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 203 VGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 203 vgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+......+++++.+.++++.+++
T Consensus 72 ---p~~~~~~vl~~l~~~~~~~~ii~ 94 (735)
T PRK14806 72 ---PVLAMEKVLADLKPLLSEHAIVT 94 (735)
T ss_pred ---CHHHHHHHHHHHHHhcCCCcEEE
Confidence 44567788899988888876554
No 405
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.91 E-value=0.37 Score=45.23 Aligned_cols=107 Identities=13% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHh---C-CCCcEEEEEeC--------------------------ChHHHHHHHHHhhc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAIN---H-LTTTCFDNYDI--------------------------DPSANSKALSLVSS 169 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~---~-~~ga~V~gvDi--------------------------d~~ai~~Ar~~~~~ 169 (318)
.-|.-|++.|+- -|.|++.++.- + .++-+|.++|- .....+..++++.+
T Consensus 73 ~vpGdivE~GV~-rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 73 DVPGDIVECGVW-RGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TS-SEEEEE--T-TSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred CCCeEEEEEeeC-CCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 678899999997 56666665431 2 13456777762 11245556677776
Q ss_pred CCCC-CCCeEEEEccccc-cCcC-CCCccEEEeccccCCCh-hHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 170 DPDL-STRMFFHTTDIMN-VSSA-LKDYEVVFLAALVGMDK-DEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 170 ~~gl-~~ri~f~~gDa~~-l~~~-l~~fD~V~~aalvgm~~-~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
.|+ .++++|+.|...+ +|.. ...+-++.++. |. +.-...|+.++.+|.|||++++++.
T Consensus 152 -~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlYesT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 152 -YGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLYESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp -TTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred -cCCCcccEEEECCcchhhhccCCCccEEEEEEec----cchHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 664 6799999999875 3321 12455566664 32 6778899999999999999999984
No 406
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.84 E-value=0.38 Score=45.46 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=57.8
Q ss_pred CEEEEEccCCChHHHHHH-HHh-CCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008 123 TKIAFIGSGPLPLTSIVL-AIN-HLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA 200 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~L-A~~-~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a 200 (318)
.+|.+||+|.+|.+...- .+. +.+..+|+++|.+++..+. +.+. .| ++. ..|..++ ....|+||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~---l~~~-~g----~~~-~~~~~e~---~~~aDiIiLa 70 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKN---ASDK-YG----ITI-TTNNNEV---ANSADILILS 70 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHH---HHHh-cC----cEE-eCCcHHH---HhhCCEEEEE
Confidence 489999999887664331 121 1133479999999866544 3333 23 222 2333332 2367999987
Q ss_pred cccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008 201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA 235 (318)
Q Consensus 201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~ 235 (318)
- .+..-..+++++...++++ .+++.-.-|.
T Consensus 71 v----kP~~~~~vl~~l~~~~~~~-~lvISi~AGi 100 (272)
T PRK12491 71 I----KPDLYSSVINQIKDQIKND-VIVVTIAAGK 100 (272)
T ss_pred e----ChHHHHHHHHHHHHhhcCC-cEEEEeCCCC
Confidence 6 3456677888888878776 4555554443
No 407
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.83 E-value=0.71 Score=44.31 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=60.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHH-HHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANS-KALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~-~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
.+|..||+|..|.+.............|.-+|++++..+ .|..+... ........+..+|.. +....|+|++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~~----~l~~aDiViita 75 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDYA----DCKGADVVVITA 75 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCHH----HhCCCCEEEEcc
Confidence 379999999988887665443212268999999987654 45555443 222233444444432 345899999887
Q ss_pred ccC----CChh--------HHHHHHHHHHHhccCCeEEEEEc
Q 021008 202 LVG----MDKD--------EKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 202 lvg----m~~~--------~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-.+ ++.. --.++.+.+.+ ..|.|.+++..
T Consensus 76 ~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~t 116 (308)
T cd05292 76 GANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVT 116 (308)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEec
Confidence 653 2211 12234444443 34677776664
No 408
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.82 E-value=1.2 Score=42.20 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=90.8
Q ss_pred CCCcccccCCcChhhHHHh-------------hHHHHHHHhhcc-----cCCCCEEEEEccCCChHHHHHHHHhCC---C
Q 021008 88 ENPIANLNIFPYYSNYIKL-------------SQLEFNILTQHC-----SRFPTKIAFIGSGPLPLTSIVLAINHL---T 146 (318)
Q Consensus 88 ~~P~~~L~~fpY~~ny~~L-------------~~~E~~~l~~~~-----~~~~~rVL~IGsGplp~tai~LA~~~~---~ 146 (318)
..|.++|....+||.--+. ++.|...+.... ...+....++|||.---|.+.+-. +. .
T Consensus 27 ~qtpktlpP~~FYD~~GS~LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda-~~~~~~ 105 (321)
T COG4301 27 QQTPKTLPPKYFYDDRGSELFEQITRLPEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDA-LAHRGS 105 (321)
T ss_pred hcCCcCCCCceeecccHHHHHHHHhccccccCchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHH-hhhcCC
Confidence 4555667777777643222 233433333332 256899999999987777766543 21 1
Q ss_pred CcEEEEEeCChHHHHHH-HHHhhcCCCCCCCeEEEEccccccCcCCC---CccEEEeccccC-CChhHHHHHHHHHHHhc
Q 021008 147 TTCFDNYDIDPSANSKA-LSLVSSDPDLSTRMFFHTTDIMNVSSALK---DYEVVFLAALVG-MDKDEKIRVIDHLAKYM 221 (318)
Q Consensus 147 ga~V~gvDid~~ai~~A-r~~~~~~~gl~~ri~f~~gDa~~l~~~l~---~fD~V~~aalvg-m~~~~k~~vl~~l~r~L 221 (318)
-.+.+-||+|...+... +.+....++ -.|.-++||-......+. .-=.+|+-+.+| +++.+...++.+++..|
T Consensus 106 ~~ryvpiDv~a~iL~~ta~ai~~~y~~--l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~ 183 (321)
T COG4301 106 LLRYVPIDVSASILRATATAILREYPG--LEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGAL 183 (321)
T ss_pred cceeeeecccHHHHHHHHHHHHHhCCC--CeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcC
Confidence 26899999999988654 555555334 457777777643212222 222566666554 36789999999999999
Q ss_pred cCCeEEEEEc
Q 021008 222 APGALLMLRS 231 (318)
Q Consensus 222 kpGg~lv~r~ 231 (318)
+||-.+++--
T Consensus 184 ~pGd~~LlGv 193 (321)
T COG4301 184 RPGDYFLLGV 193 (321)
T ss_pred CCcceEEEec
Confidence 9999988744
No 409
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.81 E-value=0.65 Score=45.86 Aligned_cols=76 Identities=14% Similarity=0.133 Sum_probs=49.7
Q ss_pred CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
+..++|..|| .|-+|.+.....++ .|..|+++|.++.. +..++ ....|+|+
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~--~G~~V~~~d~~~~~-----------------------~~~~~---~~~aDlVi 147 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTL--SGYQVRILEQDDWD-----------------------RAEDI---LADAGMVI 147 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHH--CCCeEEEeCCCcch-----------------------hHHHH---HhcCCEEE
Confidence 3448999999 89887775333333 47889999986410 11111 23689999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
++. +.....++++++.. ++||.+|+
T Consensus 148 lav----P~~~~~~~~~~l~~-l~~~~iv~ 172 (374)
T PRK11199 148 VSV----PIHLTEEVIARLPP-LPEDCILV 172 (374)
T ss_pred EeC----cHHHHHHHHHHHhC-CCCCcEEE
Confidence 886 33566788888877 77766543
No 410
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=93.80 E-value=0.29 Score=46.24 Aligned_cols=95 Identities=13% Similarity=0.030 Sum_probs=59.1
Q ss_pred CCCEEEEE--ccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCCc
Q 021008 121 FPTKIAFI--GSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKDY 194 (318)
Q Consensus 121 ~~~rVL~I--GsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~f 194 (318)
.+.+++.+ |+|++|..++.+|+. .|++|++++.+++..+.++++ |...-+.....+.. ++. .-..+
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~--~G~~vi~~~~~~~~~~~~~~~-----g~~~~i~~~~~~~~~~v~~~~-~~~~~ 213 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKA--DGIKVINIVRRKEQVDLLKKI-----GAEYVLNSSDPDFLEDLKELI-AKLNA 213 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHc-----CCcEEEECCCccHHHHHHHHh-CCCCC
Confidence 45566664 889999999999986 499999999999887777653 22111111111111 111 11268
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+-.. | . .......+.+++||+++.-.
T Consensus 214 d~vid~~--g----~--~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 214 TIFFDAV--G----G--GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred cEEEECC--C----c--HHHHHHHHhhCCCCEEEEEE
Confidence 9888432 2 1 12334567899999987754
No 411
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.79 E-value=0.71 Score=44.15 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=58.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCC--cEEEEEeCChHHH-HHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTT--TCFDNYDIDPSAN-SKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~g--a~V~gvDid~~ai-~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
++|..||+|..|.+....+.. .| .+++.+|++++.. ..+..+.....-....+.+..++..+ ....|+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~--~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~----l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVN--QGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD----CKDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH----hCCCCEEEE
Confidence 489999999888777665443 24 4899999988653 33333322201112344555444333 358999998
Q ss_pred cccc----CCChhH----HHHHHHHHHHhc---cCCeEEEEEc
Q 021008 200 AALV----GMDKDE----KIRVIDHLAKYM---APGALLMLRS 231 (318)
Q Consensus 200 aalv----gm~~~~----k~~vl~~l~r~L---kpGg~lv~r~ 231 (318)
.+-. +|+..+ -.+++.++.+.+ .|.|++++-+
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 7654 333211 234444444444 5677766654
No 412
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.77 E-value=0.59 Score=46.79 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=48.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHH-HHHHhhcCCCCCCCeEEEEccccccC---cCCCCccEEE
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSK-ALSLVSSDPDLSTRMFFHTTDIMNVS---SALKDYEVVF 198 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~-Ar~~~~~~~gl~~ri~f~~gDa~~l~---~~l~~fD~V~ 198 (318)
.||++||.|+.|+++..++.+ .|..|++.|..+..-.. ....... ..+++..+.-.++. ..+.++|.|+
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~~~~~~~~~l~~-----~gi~~~~g~~~~~~~~~~~~~~~d~vv 73 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSPELLERQQELEQ-----EGITVKLGKPLELESFQPWLDQPDLVV 73 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCchhhHHHHHHHHH-----cCCEEEECCccchhhhhHHhhcCCEEE
Confidence 379999999999998777765 59999999987653221 1122233 23566665533310 1234799988
Q ss_pred eccccC
Q 021008 199 LAALVG 204 (318)
Q Consensus 199 ~aalvg 204 (318)
.+.-+.
T Consensus 74 ~s~gi~ 79 (459)
T PRK02705 74 VSPGIP 79 (459)
T ss_pred ECCCCC
Confidence 866553
No 413
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=93.73 E-value=0.32 Score=43.69 Aligned_cols=85 Identities=26% Similarity=0.273 Sum_probs=50.9
Q ss_pred EEEEEccCCChHHHHHHHH----hCCCCcEEEEEeCChHHHHHH----HHHhhcCCCCCCCeEEEEccccccCcCCCCcc
Q 021008 124 KIAFIGSGPLPLTSIVLAI----NHLTTTCFDNYDIDPSANSKA----LSLVSSDPDLSTRMFFHTTDIMNVSSALKDYE 195 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~----~~~~ga~V~gvDid~~ai~~A----r~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD 195 (318)
||.+||.|..-++...+.. .-+++.+|.=+|+|++.++.. ++++++ .|.+-+++. +.|- ...+.+.|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~-~~~~~~v~~-ttd~---~eAl~gAD 75 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEE-AGADLKVEA-TTDR---REALEGAD 75 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHH-CTTSSEEEE-ESSH---HHHHTTES
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHh-cCCCeEEEE-eCCH---HHHhCCCC
Confidence 6899999976555433322 234688999999999888754 555666 555444332 2333 33445799
Q ss_pred EEEeccccCCChhHHHHHHHH
Q 021008 196 VVFLAALVGMDKDEKIRVIDH 216 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~ 216 (318)
+|+.+.-+| ..+.+.+++
T Consensus 76 fVi~~irvG---g~~~r~~De 93 (183)
T PF02056_consen 76 FVINQIRVG---GLEAREIDE 93 (183)
T ss_dssp EEEE---TT---HHHHHHHHH
T ss_pred EEEEEeeec---chHHHHHHH
Confidence 999988776 344444443
No 414
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=93.69 E-value=0.38 Score=45.68 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=65.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f 194 (318)
.++.+||..|+|++|..++.+|+.+ | .+|+++|.++...+.++++ |...-+.....+. .++. ....+
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~v~~~~~~~~~~i~~~~-~~~~~ 236 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLY--SPSKIIMVDLDDNRLEVAKKL-----GATHTVNSAKGDAIEQVLELT-DGRGV 236 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh-----CCCceeccccccHHHHHHHHh-CCCCC
Confidence 6789999999999999999999864 7 7899999999887776643 3322222222221 1121 22369
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|+|+-.. + . ...+..+.+.|+++|+++.-..
T Consensus 237 d~vld~~--g----~-~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 237 DVVIEAV--G----I-PATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CEEEECC--C----C-HHHHHHHHHhccCCcEEEEecc
Confidence 9888432 2 1 2246777899999999986543
No 415
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.62 E-value=0.34 Score=46.11 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=55.4
Q ss_pred CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
.+|.+||+|.+|.+. ..|++ .|.+|+.+|.+++..+...+ .|. +. ..+..++.......|+|++.-
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~~-----~g~----~~-~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLR---GGHEVVGYDRNPEAVEALAE-----EGA----TG-ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHH-----CCC----ee-cCCHHHHHhhcCCCCEEEEEe
Confidence 379999999887653 22333 48899999999977765432 221 11 223333322222358888654
Q ss_pred ccCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 202 LVGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 202 lvgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
- +...-..++..+...+++|.+++--
T Consensus 68 ~---~~~~~~~v~~~l~~~l~~g~ivid~ 93 (301)
T PRK09599 68 P---AGEITDATIDELAPLLSPGDIVIDG 93 (301)
T ss_pred c---CCcHHHHHHHHHHhhCCCCCEEEeC
Confidence 2 1224456777888889888765543
No 416
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.61 E-value=0.085 Score=44.42 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..+++|+.||+|..+-..+..... .|++ |+-+..+. ++|++++.. . -+..++++.- .++...+..+|+|+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt~---~ra~~l~~~-~-~~~~~~~~~~--~~~~~~~~~~DivI 80 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRTP---ERAEALAEE-F-GGVNIEAIPL--EDLEEALQEADIVI 80 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESSH---HHHHHHHHH-H-TGCSEEEEEG--GGHCHHHHTESEEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECCH---HHHHHHHHH-c-CccccceeeH--HHHHHHHhhCCeEE
Confidence 578999999999554444433333 3765 99999997 556666665 2 1234555443 34443445899999
Q ss_pred eccccCCC
Q 021008 199 LAALVGMD 206 (318)
Q Consensus 199 ~aalvgm~ 206 (318)
.+.-++|+
T Consensus 81 ~aT~~~~~ 88 (135)
T PF01488_consen 81 NATPSGMP 88 (135)
T ss_dssp E-SSTTST
T ss_pred EecCCCCc
Confidence 88766765
No 417
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=93.60 E-value=0.36 Score=46.98 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=60.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc--c----cccCcCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD--I----MNVSSALK 192 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD--a----~~l~~~l~ 192 (318)
.++.+||..|+|++|..++.+|+.+ |+ +|+.+|.+++..+.+++ .|...-+.....+ . .++. . .
T Consensus 189 ~~g~~VlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~a~~-----lGa~~~i~~~~~~~~~~~~v~~~~-~-~ 259 (373)
T cd08299 189 TPGSTCAVFGLGGVGLSAIMGCKAA--GASRIIAVDINKDKFAKAKE-----LGATECINPQDYKKPIQEVLTEMT-D-G 259 (373)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH-----cCCceEecccccchhHHHHHHHHh-C-C
Confidence 6788999999999999999999864 88 89999999887776644 3332112211111 1 1121 1 3
Q ss_pred CccEEEeccccCCChhHHHHHHHH-HHHhccCCeEEEEEc
Q 021008 193 DYEVVFLAALVGMDKDEKIRVIDH-LAKYMAPGALLMLRS 231 (318)
Q Consensus 193 ~fD~V~~aalvgm~~~~k~~vl~~-l~r~LkpGg~lv~r~ 231 (318)
.+|+|+-.. + . ...+.. +...+++||+++.-.
T Consensus 260 ~~d~vld~~--g----~-~~~~~~~~~~~~~~~G~~v~~g 292 (373)
T cd08299 260 GVDFSFEVI--G----R-LDTMKAALASCHEGYGVSVIVG 292 (373)
T ss_pred CCeEEEECC--C----C-cHHHHHHHHhhccCCCEEEEEc
Confidence 689887433 1 1 224444 444556889887765
No 418
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=93.57 E-value=0.21 Score=50.23 Aligned_cols=100 Identities=26% Similarity=0.305 Sum_probs=61.3
Q ss_pred EEEEEccCCChHHHHH---HHHh-CCCCcEEEEEeCChHHHHHHHHHhhc---CCCCCCCeEEEEccccccCcCCCCccE
Q 021008 124 KIAFIGSGPLPLTSIV---LAIN-HLTTTCFDNYDIDPSANSKALSLVSS---DPDLSTRMFFHTTDIMNVSSALKDYEV 196 (318)
Q Consensus 124 rVL~IGsGplp~tai~---LA~~-~~~ga~V~gvDid~~ai~~Ar~~~~~---~~gl~~ri~f~~gDa~~l~~~l~~fD~ 196 (318)
+|..||+|..|.+... ++.. -+.|.+|+-+|+|++..+........ ..+...+++. +.|.. ..+.+.|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~-ttD~~---eal~~AD~ 77 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEA-TTDRR---EALDGADF 77 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEE-eCCHH---HHhcCCCE
Confidence 7999999987887444 4422 24578999999999888776554432 0233333332 44432 23457899
Q ss_pred EEeccccCCC--------hhHHHHHHHHHHHhccCCeEE
Q 021008 197 VFLAALVGMD--------KDEKIRVIDHLAKYMAPGALL 227 (318)
Q Consensus 197 V~~aalvgm~--------~~~k~~vl~~l~r~LkpGg~l 227 (318)
|+.+.-++.. .+.|..+++++.+.+.|||.+
T Consensus 78 Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~ 116 (423)
T cd05297 78 VINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIF 116 (423)
T ss_pred EEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHH
Confidence 9987754221 234555666666666666654
No 419
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.56 E-value=0.31 Score=47.58 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=58.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-HHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..+++|.+||.|.+|.+...-.+. .|..|+..+.++. ..+. +.. .|. . ..|..++ ....|+|+
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~--sG~~Vvv~~r~~~~s~~~----A~~-~G~----~--~~s~~ea---a~~ADVVv 78 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRD--SGVDVVVGLREGSKSWKK----AEA-DGF----E--VLTVAEA---AKWADVIM 78 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHH--CCCEEEEEECCchhhHHH----HHH-CCC----e--eCCHHHH---HhcCCEEE
Confidence 457899999999887765443332 4778887776643 2233 233 333 1 2243333 23689999
Q ss_pred eccccCCChhHHHHHH-HHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVI-DHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl-~~l~r~LkpGg~lv~r~ 231 (318)
+.. +...-..++ +++...|+||..|++-.
T Consensus 79 LaV----Pd~~~~~V~~~~I~~~Lk~g~iL~~a~ 108 (330)
T PRK05479 79 ILL----PDEVQAEVYEEEIEPNLKEGAALAFAH 108 (330)
T ss_pred EcC----CHHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 775 333446777 78999999998885543
No 420
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=93.55 E-value=0.51 Score=44.86 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=64.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc----ccCcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM----NVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~----~l~~~l~~f 194 (318)
.++.+|+..|+|++|..++.+|+.+ |++ |++++-+++..+.++++ |...-+.....+.. ++ .....|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~v~~~~~~~~~~l~~~-~~~~~~ 231 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKKM-----GATYVVNPFKEDVVKEVADL-TDGEGV 231 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHh-----CCcEEEcccccCHHHHHHHh-cCCCCC
Confidence 5789999999999999999999864 886 88888888777766543 32111111111111 11 122369
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+-... . ...+..+.+.|+++|+++.-.
T Consensus 232 d~vld~~g---~----~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 232 DVFLEMSG---A----PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CEEEECCC---C----HHHHHHHHHhhcCCCEEEEEc
Confidence 99986531 1 235677889999999988765
No 421
>PLN02928 oxidoreductase family protein
Probab=93.54 E-value=0.13 Score=50.40 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=60.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++|..||.|.+|-.....++. -|.+|+++|.+...-......... ... .......+...++..-+...|+|++
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~a--fG~~V~~~dr~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRP--FGVKLLATRRSWTSEPEDGLLIPN-GDV-DDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhh--CCCEEEEECCCCChhhhhhhcccc-ccc-cccccccCcccCHHHHHhhCCEEEE
Confidence 467999999999998876666664 399999999874321110000000 000 0000001122234334457899997
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
..-. +.+.+.-+=++....||||++| ++-+.|
T Consensus 233 ~lPl--t~~T~~li~~~~l~~Mk~ga~l-INvaRG 264 (347)
T PLN02928 233 CCTL--TKETAGIVNDEFLSSMKKGALL-VNIARG 264 (347)
T ss_pred CCCC--ChHhhcccCHHHHhcCCCCeEE-EECCCc
Confidence 6522 3344443445677899998765 555444
No 422
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.49 E-value=0.19 Score=47.78 Aligned_cols=98 Identities=23% Similarity=0.223 Sum_probs=64.6
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-------ccccCcC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-------IMNVSSA 190 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-------a~~l~~~ 190 (318)
..++.+||..|+|++|..++.+|+. .|++ |+.++.+++..+.++++ |...-+....-+ ..+.. .
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~--~G~~~v~~~~~~~~~~~~~~~~-----g~~~vi~~~~~~~~~~~~~~~~~~-~ 231 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKA--FGATKVVVTDIDPSRLEFAKEL-----GATHTVNVRTEDTPESAEKIAELL-G 231 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHc-----CCcEEeccccccchhHHHHHHHHh-C
Confidence 3788999999999999999999986 4877 99999998877766553 221111111111 11121 1
Q ss_pred CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...||+|+-..- . ...+.+..+.|+++|+++.-.
T Consensus 232 ~~~~d~vld~~g------~-~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 232 GKGPDVVIECTG------A-ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCEEEECCC------C-HHHHHHHHHHhhcCCEEEEEc
Confidence 135999885431 1 226777789999999988654
No 423
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.46 E-value=0.33 Score=46.22 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=55.3
Q ss_pred EEEEEccCCChHHHH-HHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008 124 KIAFIGSGPLPLTSI-VLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL 202 (318)
Q Consensus 124 rVL~IGsGplp~tai-~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal 202 (318)
+|.+||+|.+|.... .|++ .|.+|+.+|.+++..+..+ . .|. + ...+..++.......|+|++.--
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~-~g~----~-~~~s~~~~~~~~~~advVi~~vp 68 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE---DGHEVVGYDVNQEAVDVAG----K-LGI----T-ARHSLEELVSKLEAPRTIWVMVP 68 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHH----H-CCC----e-ecCCHHHHHHhCCCCCEEEEEec
Confidence 799999998876532 2332 4789999999997766543 2 221 1 12233333222223688886531
Q ss_pred cCCChhHHHHHHHHHHHhccCCeEEEEE
Q 021008 203 VGMDKDEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
+.+.-..+++.+...++||.+++--
T Consensus 69 ---~~~~~~~v~~~i~~~l~~g~ivid~ 93 (299)
T PRK12490 69 ---AGEVTESVIKDLYPLLSPGDIVVDG 93 (299)
T ss_pred ---CchHHHHHHHHHhccCCCCCEEEEC
Confidence 2234566778888888888766554
No 424
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.43 E-value=0.17 Score=42.52 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=53.1
Q ss_pred EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHH-HhhcCCCCCCCeEEEEcccccc-CcCCCCccEEEeccc
Q 021008 125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALS-LVSSDPDLSTRMFFHTTDIMNV-SSALKDYEVVFLAAL 202 (318)
Q Consensus 125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~-~~~~~~gl~~ri~f~~gDa~~l-~~~l~~fD~V~~aal 202 (318)
|+.+|+|.+|..--..-+ ..|..|+.++..+ ..+.-++ -+.- .+...+..+........ ....+.||+||++.
T Consensus 1 I~I~G~GaiG~~~a~~L~--~~g~~V~l~~r~~-~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v- 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA--QAGHDVTLVSRSP-RLEAIKEQGLTI-TGPDGDETVQPPIVISAPSADAGPYDLVIVAV- 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHH--HTTCEEEEEESHH-HHHHHHHHCEEE-EETTEEEEEEEEEEESSHGHHHSTESEEEE-S-
T ss_pred CEEECcCHHHHHHHHHHH--HCCCceEEEEccc-cHHhhhheeEEE-EecccceecccccccCcchhccCCCcEEEEEe-
Confidence 688999976544322222 2699999999998 4333221 1111 01111111111111111 12335899999874
Q ss_pred cCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 203 VGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 203 vgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
..-+-..+++.+.+.++|++.+++
T Consensus 76 ---Ka~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 76 ---KAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp ---SGGGHHHHHHHHCTGEETTEEEEE
T ss_pred ---cccchHHHHHHHhhccCCCcEEEE
Confidence 223556689999999999966544
No 425
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.43 E-value=0.084 Score=55.70 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=29.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP 157 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~ 157 (318)
.+++|+.||+||.|+++...+.+ .|.+|+-+|.++
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 56899999999999999877765 488999999764
No 426
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.38 E-value=0.47 Score=47.89 Aligned_cols=74 Identities=7% Similarity=-0.023 Sum_probs=48.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..+++|+.||.|+.|+++..+..+ .|.+|+.+|.++.. .....+.+++ ..+++..++.... ...+|+|+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~~~~~~~~~~l~~-----~gv~~~~~~~~~~---~~~~D~Vv 83 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDDERHRALAAILEA-----LGATVRLGPGPTL---PEDTDLVV 83 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchhhhHHHHHHHHH-----cCCEEEECCCccc---cCCCCEEE
Confidence 356899999999999887665554 48999999976532 2222233343 3467777654431 23699998
Q ss_pred ecccc
Q 021008 199 LAALV 203 (318)
Q Consensus 199 ~aalv 203 (318)
++.-+
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 87655
No 427
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=93.23 E-value=0.19 Score=48.71 Aligned_cols=98 Identities=20% Similarity=0.195 Sum_probs=63.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCc-CCCCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSS-ALKDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~-~l~~fD~ 196 (318)
.++++||..|+|++|..++.+|+.. |+ .|+++|.+++..+.++++ |...-+.....+.. .+.. ....+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~--G~~~v~~~~~~~~k~~~~~~~-----g~~~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIA--GCTTIIAVDIVDSRLELAKEL-----GATHVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHc-----CCcEEecCCCcCHHHHHHHHhCCCCcE
Confidence 5789999999999999999999864 88 699999999887776543 22100111000110 1100 1236998
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+-.. | . ...+....+.++++|+++.-.
T Consensus 258 vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTT--G----V-PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECC--C----C-cHHHHHHHHHhccCCEEEEeC
Confidence 88543 1 1 235677789999999988754
No 428
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.22 E-value=0.13 Score=49.76 Aligned_cols=95 Identities=18% Similarity=0.139 Sum_probs=58.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+++|..||.|.+|......++. -|.+|+++|.++... .+.. .+. ...++..-+...|+|++
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~a--fG~~V~~~~~~~~~~----------~~~~---~~~--~~~~l~e~l~~aDvvv~ 196 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQT--WGFPLRCWSRSRKSW----------PGVQ---SFA--GREELSAFLSQTRVLIN 196 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCCCC----------CCce---eec--ccccHHHHHhcCCEEEE
Confidence 467899999999988765555554 399999999865321 1111 111 11233333457899886
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
.. +.+.+.+.-+-++..+.||||++| ++-+.|
T Consensus 197 ~l--Plt~~T~~li~~~~l~~mk~ga~l-IN~aRG 228 (312)
T PRK15469 197 LL--PNTPETVGIINQQLLEQLPDGAYL-LNLARG 228 (312)
T ss_pred CC--CCCHHHHHHhHHHHHhcCCCCcEE-EECCCc
Confidence 64 224444444446688899998755 555444
No 429
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.20 E-value=0.22 Score=45.89 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=58.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccccc--CcC-CCCccEE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNV--SSA-LKDYEVV 197 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l--~~~-l~~fD~V 197 (318)
..-|+|+|||= -+..++.-. .-..|+.||+++ +. .+ +...|-++. |.. .+.||+|
T Consensus 51 ~~lrlLEVGal-s~~N~~s~~----~~fdvt~IDLns----------~~-~~------I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 51 PKLRLLEVGAL-STDNACSTS----GWFDVTRIDLNS----------QH-PG------ILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred ccceEEeeccc-CCCCccccc----CceeeEEeecCC----------CC-CC------ceeeccccCCCCCCcccceeEE
Confidence 34699999994 133332211 334699999987 11 22 345666654 322 3389998
Q ss_pred Eeccc---cCCChhHHHHHHHHHHHhccCCeE-----EEEEcC
Q 021008 198 FLAAL---VGMDKDEKIRVIDHLAKYMAPGAL-----LMLRSA 232 (318)
Q Consensus 198 ~~aal---vgm~~~~k~~vl~~l~r~LkpGg~-----lv~r~~ 232 (318)
.++-+ |+ ++..+-+.+..+.+.|+|+|. |.+--+
T Consensus 109 s~SLVLNfVP-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 109 SLSLVLNFVP-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred EEEEEEeeCC-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 86542 34 578999999999999999999 666554
No 430
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.19 E-value=0.34 Score=48.02 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=52.2
Q ss_pred CCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 121 FPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
...+|+.||. |-+|.+-...-++. .+.+|+|+|.+. .+. .+........|+|++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d-------------~~~-----------~~~~~~v~~aDlVil 57 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPAD-------------PGS-----------LDPATLLQRADVLIF 57 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCc-------------ccc-----------CCHHHHhcCCCEEEE
Confidence 3569999999 98776643333322 388999999841 000 111122347899999
Q ss_pred ccccCCChhHHHHHHHHHHHh---ccCCeEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKY---MAPGALLM 228 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~---LkpGg~lv 228 (318)
+. +...-.++++++.+. ++||.++.
T Consensus 58 av----Pv~~~~~~l~~l~~~~~~l~~~~iVt 85 (370)
T PRK08818 58 SA----PIRHTAALIEEYVALAGGRAAGQLWL 85 (370)
T ss_pred eC----CHHHHHHHHHHHhhhhcCCCCCeEEE
Confidence 87 556778899998876 68876553
No 431
>PLN02702 L-idonate 5-dehydrogenase
Probab=93.17 E-value=0.29 Score=47.15 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=65.0
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEE--Eccccc----cCc-C
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFH--TTDIMN----VSS-A 190 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~--~gDa~~----l~~-~ 190 (318)
..++.+||.+|+|++|..++.+|+.. |+. |+.+|.+++..+.++++ |....+.+. ..+..+ +.. .
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAF--GAPRIVIVDVDDERLSVAKQL-----GADEIVLVSTNIEDVESEVEEIQKAM 251 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-----CCCEEEecCcccccHHHHHHHHhhhc
Confidence 36788999999999999999999864 764 88999998887777653 222222221 111111 110 1
Q ss_pred CCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 191 LKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 191 l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
...+|+|+-.. + . ...+....+.|+++|+++.-.
T Consensus 252 ~~~~d~vid~~--g----~-~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 252 GGGIDVSFDCV--G----F-NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCCEEEECC--C----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 12689888543 1 1 235778889999999988655
No 432
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.14 E-value=0.85 Score=39.61 Aligned_cols=102 Identities=14% Similarity=0.173 Sum_probs=54.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++|+.||+|..+...+..... .|+.|+-|+ |+..+..++ + ..+++......+ .++.++|+|+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIs--p~~~~~l~~-------l-~~i~~~~~~~~~--~dl~~a~lVia 76 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKD--TGAFVTVVS--PEICKEMKE-------L-PYITWKQKTFSN--DDIKDAHLIYA 76 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEc--CccCHHHHh-------c-cCcEEEecccCh--hcCCCceEEEE
Confidence 578999999999877654332222 489999884 443332221 1 234544332222 34568898886
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCcccccccC
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYPV 242 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP~ 242 (318)
+- +..+.-..+...++ .++.+-+.+......|..|.
T Consensus 77 aT----~d~e~N~~i~~~a~---~~~~vn~~d~~~~~~f~~pa 112 (157)
T PRK06719 77 AT----NQHAVNMMVKQAAH---DFQWVNVVSDGTESSFHTPG 112 (157)
T ss_pred CC----CCHHHHHHHHHHHH---HCCcEEECCCCCcCcEEeee
Confidence 53 23344444444444 34443333322334577774
No 433
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.14 E-value=0.13 Score=52.35 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=57.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhC-CCCcEEE------EEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINH-LTTTCFD------NYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALK 192 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~-~~ga~V~------gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~ 192 (318)
-.+++|+.||+|..|-. .|... -.|..|+ +||.++..-+.|. . .|+ ..++..+ ...
T Consensus 34 LkgKtIaIIGyGSqG~A---qAlNLrdSGvnVvvglr~~~id~~~~s~~kA~----~-dGF------~v~~~~E---a~~ 96 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLN---QGLNMRDSGLDISYALRKEAIAEKRASWRKAT----E-NGF------KVGTYEE---LIP 96 (487)
T ss_pred hCCCEEEEEccCHHHHH---HhCCCccccceeEEeccccccccccchHHHHH----h-cCC------ccCCHHH---HHH
Confidence 46799999999987662 22211 1355555 4555555555543 2 243 1233333 234
Q ss_pred CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
..|+|++.. |.+....+.+++...||||+.|.+..
T Consensus 97 ~ADvVviLl----PDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 97 QADLVINLT----PDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred hCCEEEEcC----ChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 789888654 33457888899999999999998754
No 434
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.10 E-value=0.47 Score=45.14 Aligned_cols=100 Identities=21% Similarity=0.244 Sum_probs=56.0
Q ss_pred EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH--hhcCCCCCCCeEEE-EccccccCcCCCCccEEEecc
Q 021008 125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL--VSSDPDLSTRMFFH-TTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~--~~~~~gl~~ri~f~-~gDa~~l~~~l~~fD~V~~aa 201 (318)
|..||+|.+|.+...+......+ .|+-+|++++.. .+..+ .....-.....++. ++|.. ++...|+|++.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~~----~l~dADiVIit~ 74 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDYE----DIAGSDVVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCHH----HhCCCCEEEEec
Confidence 56899999888765544332123 999999998743 33222 11100111223443 24422 345789999866
Q ss_pred ccC------------CChhHHHHHHHHHHHhccCCeE-EEEEc
Q 021008 202 LVG------------MDKDEKIRVIDHLAKYMAPGAL-LMLRS 231 (318)
Q Consensus 202 lvg------------m~~~~k~~vl~~l~r~LkpGg~-lv~r~ 231 (318)
-.+ -+.+-+.++++.+.+.. |.+. +++-+
T Consensus 75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sN 116 (300)
T cd01339 75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTN 116 (300)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 331 13345667888887766 4555 44444
No 435
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.02 E-value=0.19 Score=48.16 Aligned_cols=90 Identities=24% Similarity=0.265 Sum_probs=57.6
Q ss_pred CEEEEEccCCChHHHHHHHHhCC-CCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHL-TTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA 200 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~-~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a 200 (318)
.||.|||-|-+|.+. |+++. .|..|+.+|.+++. .++++. .|. +... +..+ .....|+|++.
T Consensus 1 ~kIafIGLG~MG~pm---A~~L~~aG~~v~v~~r~~~ka~~~~~~-----~Ga----~~a~-s~~e---aa~~aDvVitm 64 (286)
T COG2084 1 MKIAFIGLGIMGSPM---AANLLKAGHEVTVYNRTPEKAAELLAA-----AGA----TVAA-SPAE---AAAEADVVITM 64 (286)
T ss_pred CeEEEEcCchhhHHH---HHHHHHCCCEEEEEeCChhhhhHHHHH-----cCC----cccC-CHHH---HHHhCCEEEEe
Confidence 489999999987763 33321 48999999999977 444432 222 1111 1111 12378998865
Q ss_pred cccCCChhHHHHHH---HHHHHhccCCeEEEEEc
Q 021008 201 ALVGMDKDEKIRVI---DHLAKYMAPGALLMLRS 231 (318)
Q Consensus 201 alvgm~~~~k~~vl---~~l~r~LkpGg~lv~r~ 231 (318)
- . +...-..++ .-+...++||.+++--+
T Consensus 65 v-~--~~~~V~~V~~g~~g~~~~~~~G~i~IDmS 95 (286)
T COG2084 65 L-P--DDAAVRAVLFGENGLLEGLKPGAIVIDMS 95 (286)
T ss_pred c-C--CHHHHHHHHhCccchhhcCCCCCEEEECC
Confidence 3 2 445666677 46888899999887755
No 436
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.01 E-value=1.3 Score=40.77 Aligned_cols=85 Identities=20% Similarity=0.132 Sum_probs=55.3
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--c--CCCCccEEE
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--S--ALKDYEVVF 198 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~--~l~~fD~V~ 198 (318)
++++.||+|.+|.+..-.... .|-.|+.||.|++.++...+ .. .....+++|+++.. . ....+|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d~~~~~~~~~--~~-----~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--EGHNVVLIDRDEERVEEFLA--DE-----LDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--CCCceEEEEcCHHHHHHHhh--hh-----cceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 589999999998875433322 47899999999987766322 11 33577889998731 2 234799887
Q ss_pred eccccCCChhHHHHHHHHHHHh
Q 021008 199 LAALVGMDKDEKIRVIDHLAKY 220 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~ 220 (318)
.+-- ..+-.-++..++..
T Consensus 72 a~t~----~d~~N~i~~~la~~ 89 (225)
T COG0569 72 AATG----NDEVNSVLALLALK 89 (225)
T ss_pred EeeC----CCHHHHHHHHHHHH
Confidence 5542 12344566666655
No 437
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.95 E-value=1 Score=43.39 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=62.5
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-HHHHHHHHhhcCCCCC--CCeEEEEccccccCcCCCCccEEEec
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-ANSKALSLVSSDPDLS--TRMFFHTTDIMNVSSALKDYEVVFLA 200 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-ai~~Ar~~~~~~~gl~--~ri~f~~gDa~~l~~~l~~fD~V~~a 200 (318)
||..||+|..|.+..++.-...-...+.-+|++++ +...|..+... ..+. .++++..+|.. +++..|+|++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~----~~~~aDivvit 75 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYD----DCADADIIVIT 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHH----HhCCCCEEEEC
Confidence 58899999988887443322222457999999865 33455555443 2221 35777766643 34579998887
Q ss_pred ccc----CCCh------hHHHHHHHHHHHhcc---CCeEEEEEc
Q 021008 201 ALV----GMDK------DEKIRVIDHLAKYMA---PGALLMLRS 231 (318)
Q Consensus 201 alv----gm~~------~~k~~vl~~l~r~Lk---pGg~lv~r~ 231 (318)
+-. ||+. ..-.++++++.+.++ |.|.+++-+
T Consensus 76 aG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 76 AGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 765 4431 233556666666654 567666544
No 438
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.93 E-value=1.1 Score=41.56 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=58.9
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC---------cCCCC
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS---------SALKD 193 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~---------~~l~~ 193 (318)
+.++..|+|.+|. .+|+++..|++|+.+|.+++..+...+.... .+.++.++.+|+.+.. ...+.
T Consensus 3 k~~lItGa~gIG~---~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~ 76 (275)
T PRK06940 3 EVVVVIGAGGIGQ---AIARRVGAGKKVLLADYNEENLEAAAKTLRE---AGFDVSTQEVDVSSRESVKALAATAQTLGP 76 (275)
T ss_pred CEEEEECCChHHH---HHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence 4566666653333 3455544699999999998766554433333 2357888999997631 12346
Q ss_pred ccEEEeccccCCChhHHHH-----------HHHHHHHhccCCeEEEE
Q 021008 194 YEVVFLAALVGMDKDEKIR-----------VIDHLAKYMAPGALLML 229 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~-----------vl~~l~r~LkpGg~lv~ 229 (318)
.|+++..+-+.-...+..+ +++.+.+.|+++|.+++
T Consensus 77 id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 77 VTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred CCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 8987765544211222222 35566677776665443
No 439
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.90 E-value=0.44 Score=43.59 Aligned_cols=108 Identities=9% Similarity=0.049 Sum_probs=63.0
Q ss_pred ccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHH----H--HHHHHhhcCCCCCCCeEEEEccccccCcCC
Q 021008 118 CSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSAN----S--KALSLVSSDPDLSTRMFFHTTDIMNVSSAL 191 (318)
Q Consensus 118 ~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai----~--~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l 191 (318)
+..++.+|.++=-|.+=+| ..++....|...|+++=.++-.. . +-+...++ .+. .+++.+-.+...+. .-
T Consensus 45 Glkpg~tVid~~PGgGy~T-rI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~-aN~e~~~~~~~A~~-~p 120 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFT-RIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVY-ANVEVIGKPLVALG-AP 120 (238)
T ss_pred ccCCCCEEEEEecCCccHh-hhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhh-hhhhhhCCcccccC-CC
Confidence 3588999999988844455 45776555666888876654311 1 11111111 222 33333333433332 22
Q ss_pred CCccEEEe--------ccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 192 KDYEVVFL--------AALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~--------aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.-|+++. ...+ +...-.++.+++++.|||||++++-+
T Consensus 121 q~~d~~~~~~~yhdmh~k~i--~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNI--HPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred Ccccccccchhhhhhhcccc--CcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 24444443 3333 34566789999999999999999877
No 440
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.89 E-value=0.11 Score=45.76 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=55.8
Q ss_pred EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc-cccCcCCCCccEEEecccc
Q 021008 125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI-MNVSSALKDYEVVFLAALV 203 (318)
Q Consensus 125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa-~~l~~~l~~fD~V~~aalv 203 (318)
.+-||||+- +.-||+..|-+.-.++. .++ .++ ...++.+++.|+++..+..
T Consensus 6 kv~ig~G~~---------r~npgWi~~d~ed~~~v------------------dlv-c~As~e~~F~dns~d~iyaeHvl 57 (185)
T COG4627 6 KVKIGAGGK---------RVNPGWIITDVEDRPEV------------------DLV-CRASNESMFEDNSVDAIYAEHVL 57 (185)
T ss_pred EEEEecccc---------ccCCCceeeehhccccc------------------chh-hhhhhhccCCCcchHHHHHHHHH
Confidence 567999963 34489998755444421 111 111 1345677799999866643
Q ss_pred -CCChhHHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 204 -GMDKDEKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 204 -gm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
++.-.+-...++++++.|||||.|-+.-+++
T Consensus 58 EHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 58 EHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred HHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 4455677889999999999999998877665
No 441
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.88 E-value=0.64 Score=45.13 Aligned_cols=107 Identities=14% Similarity=0.210 Sum_probs=61.7
Q ss_pred CCCEEEEEcc-CCChHHHHHHHHhCCCCc-----EEEEEeCChH---HHHHHHHHhhcCCCCCCCeEEEEccccccCcCC
Q 021008 121 FPTKIAFIGS-GPLPLTSIVLAINHLTTT-----CFDNYDIDPS---ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL 191 (318)
Q Consensus 121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga-----~V~gvDid~~---ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l 191 (318)
+|.||..||+ |..|.+..+.......-. .++-+|+.+. +...|..+......+..++++..+|- .++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~----~~~ 76 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPN----VAF 76 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcH----HHh
Confidence 4789999999 998888665433211122 7999999543 34444444433112223455543332 345
Q ss_pred CCccEEEecccc----CCCh----hHHHHHHHHHHHhc---c-CCeEEEEEc
Q 021008 192 KDYEVVFLAALV----GMDK----DEKIRVIDHLAKYM---A-PGALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalv----gm~~----~~k~~vl~~l~r~L---k-pGg~lv~r~ 231 (318)
...|+|++.+-. +|+. ..-.++++++...+ . |.|++++-+
T Consensus 77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 689998887755 4432 22344555555554 3 577777765
No 442
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.84 E-value=0.28 Score=46.46 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc-cC--cCCCCccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN-VS--SALKDYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~-l~--~~l~~fD~ 196 (318)
.++.+||..|+|.+|..++.+|+. .|.+|+++..+++..+..+++ |...-+.....+..+ +. .....+|+
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~~-----g~~~v~~~~~~~~~~~l~~~~~~~~vd~ 230 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFAREL-----GADDTINVGDEDVAARLRELTDGEGADV 230 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHh-----CCCEEecCcccCHHHHHHHHhCCCCCCE
Confidence 678899999999889999999986 489999998888877766543 211111121111111 11 11235899
Q ss_pred EEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
++-.. + ....+.++.+.|+++|.++.-.
T Consensus 231 vld~~--g-----~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 231 VIDAT--G-----NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EEECC--C-----CHHHHHHHHHHHhcCCEEEEEc
Confidence 88543 1 1235677789999999988654
No 443
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.81 E-value=0.98 Score=40.80 Aligned_cols=101 Identities=19% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCCEEEEEccCCChHHHH-HHHHhCCCCc-EEEEEeCC---hHHHHH---------------HHHHhhcCCCCCCCeEEE
Q 021008 121 FPTKIAFIGSGPLPLTSI-VLAINHLTTT-CFDNYDID---PSANSK---------------ALSLVSSDPDLSTRMFFH 180 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai-~LA~~~~~ga-~V~gvDid---~~ai~~---------------Ar~~~~~~~gl~~ri~f~ 180 (318)
...||+.||||.+|-... .||+ .|. +++-+|.| ++-+.+ +.+...+ ....-+++.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~---~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~-inp~~~i~~~ 95 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR---AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISE-INPYTEIEAY 95 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH---cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHH-HCCCCEEEEe
Confidence 568999999998666543 3443 476 69999999 433322 1222222 1112334444
Q ss_pred Eccccc--cCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 181 TTDIMN--VSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 181 ~gDa~~--l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
..+..+ +...+.++|+|+-+ .- +.+.|..+++.+.+.+++.-++.
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a-~D--n~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEA-FD--NAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEEC-CC--CHHHHHHHHHHHHHHcCCCcEEE
Confidence 333332 21124579999866 21 45778888999998887644444
No 444
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.80 E-value=0.5 Score=44.51 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=52.8
Q ss_pred CEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEecc
Q 021008 123 TKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAA 201 (318)
Q Consensus 123 ~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aa 201 (318)
.+|.+||+|.+|... ..+++ .|.+|+++|.+++..+...+ .|. .+ +.+..++ ....|+|++..
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~---~g~~v~~~d~~~~~~~~~~~-----~g~----~~-~~~~~e~---~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVYDRNPEAVAEVIA-----AGA----ET-ASTAKAV---AEQCDVIITML 66 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHH-----CCC----ee-cCCHHHH---HhcCCEEEEeC
Confidence 489999999887653 34443 48899999999987665432 121 11 2222222 23689999775
Q ss_pred ccCCChhHHHHHH---HHHHHhccCCeEEE
Q 021008 202 LVGMDKDEKIRVI---DHLAKYMAPGALLM 228 (318)
Q Consensus 202 lvgm~~~~k~~vl---~~l~r~LkpGg~lv 228 (318)
-. ...-..++ +.+...++||..++
T Consensus 67 p~---~~~~~~v~~~~~~~~~~~~~g~iii 93 (296)
T PRK11559 67 PN---SPHVKEVALGENGIIEGAKPGTVVI 93 (296)
T ss_pred CC---HHHHHHHHcCcchHhhcCCCCcEEE
Confidence 21 12222333 44677788877776
No 445
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.80 E-value=0.21 Score=46.74 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=55.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc-----CCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS-----ALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~-----~l~~f 194 (318)
.+.-++||||.|+--.=.+.=.+. .|++++|-|||+.+++.|+.++.+-+++...|+....-=.+.-+ ....|
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~e--YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHE--YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred cCceEEEeeccCccccccccccee--ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence 466799999999732222222233 49999999999999999999988756888888886553332111 12368
Q ss_pred cEEEec
Q 021008 195 EVVFLA 200 (318)
Q Consensus 195 D~V~~a 200 (318)
|++...
T Consensus 155 d~tlCN 160 (292)
T COG3129 155 DATLCN 160 (292)
T ss_pred eeEecC
Confidence 887743
No 446
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.79 E-value=0.36 Score=47.16 Aligned_cols=101 Identities=12% Similarity=0.120 Sum_probs=63.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
-.+++|.+||.|.+|..-...++. .|.+|++.|..+...+. +.. .|. ++ .+..++ ....|+|++
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d--~G~~ViV~~r~~~s~~~----A~~-~G~----~v--~sl~Ea---ak~ADVV~l 77 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRD--SGVEVVVGVRPGKSFEV----AKA-DGF----EV--MSVSEA---VRTAQVVQM 77 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHH--CcCEEEEEECcchhhHH----HHH-cCC----EE--CCHHHH---HhcCCEEEE
Confidence 478999999999988775555544 49999998855433333 233 232 22 233333 347899987
Q ss_pred ccccCCChhHHHHHH-HHHHHhccCCeEEEEEcCCCcccccccCC
Q 021008 200 AALVGMDKDEKIRVI-DHLAKYMAPGALLMLRSAHGARAFLYPVV 243 (318)
Q Consensus 200 aalvgm~~~~k~~vl-~~l~r~LkpGg~lv~r~~~g~r~~lYP~v 243 (318)
..- +... ..++ +.+...|+||..|++. ||+ ...|-.+
T Consensus 78 lLP---d~~t-~~V~~~eil~~MK~GaiL~f~--hgf-ni~~~~i 115 (335)
T PRK13403 78 LLP---DEQQ-AHVYKAEVEENLREGQMLLFS--HGF-NIHFGQI 115 (335)
T ss_pred eCC---ChHH-HHHHHHHHHhcCCCCCEEEEC--CCc-ceecCce
Confidence 642 2334 4565 5799999999988775 554 2344433
No 447
>PRK05442 malate dehydrogenase; Provisional
Probab=92.67 E-value=0.74 Score=44.82 Aligned_cols=108 Identities=17% Similarity=0.276 Sum_probs=61.7
Q ss_pred CCCCEEEEEcc-CCChHHHHHH-HHhCCCC----cEEEEEeCChH---HHHHHHHHhhcCCCCCCCeEEEEccccccCcC
Q 021008 120 RFPTKIAFIGS-GPLPLTSIVL-AINHLTT----TCFDNYDIDPS---ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSA 190 (318)
Q Consensus 120 ~~~~rVL~IGs-Gplp~tai~L-A~~~~~g----a~V~gvDid~~---ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~ 190 (318)
..|.||..||+ |..|.+..+. +..-.-+ ..++=+|+++. +...|..+......+..++++..+|- .+
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y----~~ 77 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPN----VA 77 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChH----HH
Confidence 56889999998 9988886443 2211111 27899999653 44445444443112223455544332 34
Q ss_pred CCCccEEEecccc----CCCh----hHHHHHHHHHHHhc----cCCeEEEEEc
Q 021008 191 LKDYEVVFLAALV----GMDK----DEKIRVIDHLAKYM----APGALLMLRS 231 (318)
Q Consensus 191 l~~fD~V~~aalv----gm~~----~~k~~vl~~l~r~L----kpGg~lv~r~ 231 (318)
+.+.|+|++.+-+ +|+. ..-.++++++.+.+ .|.|.+++-+
T Consensus 78 ~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 78 FKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4579988877655 4432 22335555555544 3577777766
No 448
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.66 E-value=0.52 Score=48.73 Aligned_cols=107 Identities=18% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCEEEEEccCCChHH--HHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 122 PTKIAFIGSGPLPLT--SIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 122 ~~rVL~IGsGplp~t--ai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
...|+.+|.|-+|+- ++-.|+......++.+|+-+|.|+-.-+. ... .+.+++|+++.+|..+......+.|+++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~-~~W~~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNF-ECWDNRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hch-hhhcCeeEEEeccccccCCchhhccchHH
Confidence 457788888776654 45556655557889999999999877655 333 46789999999999988654347787763
Q ss_pred ccccCC--ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 200 AALVGM--DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 200 aalvgm--~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-|+|- +-|-..+.|.-+-+.|||.|+-+=++
T Consensus 446 -ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 446 -ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred -HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 23321 55677889999999999999877665
No 449
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.65 E-value=0.81 Score=42.96 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 122 PTKIAFIGSGPLPLTSIVLAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 122 ~~rVL~IGsGplp~tai~LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+|.+||+|.+|.+-..-..+. ....+|+.+|.+++. +++++... .| ++. ..|..++ ....|+|++
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~--~~~~l~~~-~g----~~~-~~~~~e~---~~~aDvVil 71 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNET--RLQELHQK-YG----VKG-THNKKEL---LTDANILFL 71 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHH--HHHHHHHh-cC----ceE-eCCHHHH---HhcCCEEEE
Confidence 36899999998876543221111 122678999987632 22333333 23 222 2333332 236799998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+- +...-.+++..+...+++|..++-
T Consensus 72 av----~p~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 72 AM----KPKDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred Ee----CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 76 345566788888888888765543
No 450
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.65 E-value=0.14 Score=53.98 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=29.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP 157 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~ 157 (318)
.+++|+.||+||.|+++...+++ .|.+|+-+|..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCC
Confidence 47999999999999998877765 488999998665
No 451
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.63 E-value=1 Score=43.15 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=57.3
Q ss_pred EEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHH---hhcCCC--CCCCeEEEEccccccCcCCCCccEE
Q 021008 124 KIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSL---VSSDPD--LSTRMFFHTTDIMNVSSALKDYEVV 197 (318)
Q Consensus 124 rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~---~~~~~g--l~~ri~f~~gDa~~l~~~l~~fD~V 197 (318)
+|..||+|.+|.+--. |++ .|..|+-++.+++.++.-++. .....+ +...+++. .|..+.. .+.+|+|
T Consensus 2 kI~IiGaGa~G~ala~~L~~---~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~--~~~~Dli 75 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS---KKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL--SDNATCI 75 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH---CCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH--hCCCCEE
Confidence 7999999998775433 333 378999999998766544432 111011 22233332 2322211 1368999
Q ss_pred EeccccCCChhHHHHHHHHHHH-hccCCeEEEE
Q 021008 198 FLAALVGMDKDEKIRVIDHLAK-YMAPGALLML 229 (318)
Q Consensus 198 ~~aalvgm~~~~k~~vl~~l~r-~LkpGg~lv~ 229 (318)
+++- +...-..+++.+.. .++++..++.
T Consensus 76 iiav----ks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 76 ILAV----PTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred EEEe----CHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 9875 33455678888887 7887775544
No 452
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.62 E-value=0.8 Score=44.23 Aligned_cols=101 Identities=21% Similarity=0.286 Sum_probs=59.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHH-hhc-CCCCCCCeEEEE-ccccccCcCCCCccE
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSL-VSS-DPDLSTRMFFHT-TDIMNVSSALKDYEV 196 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~-~~~-~~gl~~ri~f~~-gDa~~l~~~l~~fD~ 196 (318)
+..+|..||+|.+|.+...++.. .| +.++-+|++++..+ +..+ ... ..-.+...++.. +|-. ++...|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~~----~l~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNYE----DIKDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCHH----HhCCCCE
Confidence 45799999999988887666554 34 68999999986543 3322 111 011222344442 3322 4457899
Q ss_pred EEeccccCCCh------------hHHHHHHHHHHHhccCCeEEEE
Q 021008 197 VFLAALVGMDK------------DEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 197 V~~aalvgm~~------------~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
|++.+-++-.. +-+.++.+.+.+. .|.+.+++
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~viv 120 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVIC 120 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 99877552211 3355666666655 46774444
No 453
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.59 E-value=1.5 Score=39.77 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=57.2
Q ss_pred CEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH-hhcCCC-CCCCeEEEEccccccCcCCCCccEEEe
Q 021008 123 TKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL-VSSDPD-LSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 123 ~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~-~~~~~g-l~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
++|.+|| +|.+|.+......+ .|.+|+.++.+++..+...+. ... .+ .+-.+++...+..+ .....|+|++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~--~G~~V~v~~r~~~~~~~l~~~~~~~-~~~~g~~~~~~~~~~~e---a~~~aDvVil 74 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK--AGNKIIIGSRDLEKAEEAAAKALEE-LGHGGSDIKVTGADNAE---AAKRADVVIL 74 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh--CCCEEEEEEcCHHHHHHHHHHHHhh-ccccCCCceEEEeChHH---HHhcCCEEEE
Confidence 4799997 89877664333222 478899999999776554332 111 11 11112222222222 2346899998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA 235 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~ 235 (318)
+. +...-..+++.+...++ + .+++.-..|.
T Consensus 75 av----p~~~~~~~l~~l~~~l~-~-~vvI~~~ngi 104 (219)
T TIGR01915 75 AV----PWDHVLKTLESLRDELS-G-KLVISPVVPL 104 (219)
T ss_pred EC----CHHHHHHHHHHHHHhcc-C-CEEEEeccCc
Confidence 76 33445666777766554 3 5666665554
No 454
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.59 E-value=0.55 Score=45.64 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=60.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCC------CCeEEEEccccccCcCCCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLS------TRMFFHTTDIMNVSSALKD 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~------~ri~f~~gDa~~l~~~l~~ 193 (318)
....+|..||+|.+|.+......+ .| .++.+..+++.++.-++.-.....++ .++.+ ..|.. .....
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~--~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~---~a~~~ 77 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICAR--RG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFA---EAANC 77 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--CC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHH---HHHhc
Confidence 456799999999987765443333 24 67888899987766654211001122 12322 22222 22347
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
.|+|+++- +...-..+++++...++++..++
T Consensus 78 aDlVilav----ps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 78 ADVVVMGV----PSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred CCEEEEEe----CHHHHHHHHHHHHhhcCCCCEEE
Confidence 89998875 34566778999999998887554
No 455
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.58 E-value=3.5 Score=36.28 Aligned_cols=119 Identities=16% Similarity=0.177 Sum_probs=72.1
Q ss_pred ccCCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCC
Q 021008 94 LNIFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDL 173 (318)
Q Consensus 94 L~~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl 173 (318)
|+-|.|=+.=...+..+.... .....||++||| |-=+.+ +.+...++.++.-+|+|..- +. +
T Consensus 2 lsQfwYs~~T~~~l~~~l~~~----~~~~~~iaclst-Psl~~~--l~~~~~~~~~~~Lle~D~RF--------~~---~ 63 (162)
T PF10237_consen 2 LSQFWYSDETAEFLARELLDG----ALDDTRIACLST-PSLYEA--LKKESKPRIQSFLLEYDRRF--------EQ---F 63 (162)
T ss_pred ccccccCHHHHHHHHHHHHHh----cCCCCEEEEEeC-cHHHHH--HHhhcCCCccEEEEeecchH--------Hh---c
Confidence 344566666555555554432 146689999999 632222 22212468899999999732 22 2
Q ss_pred CCCeEEEEcccc---ccCcCCC-CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 174 STRMFFHTTDIM---NVSSALK-DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 174 ~~ri~f~~gDa~---~l~~~l~-~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
+.+ .|+-=|.. +++..+. +||+|+++==- +..+-..++..-+.-.+++++.+++-.+
T Consensus 64 ~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF-l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 64 GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF-LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCc-ceEECCCCChhhhhhhcCCCceEEEECCCC-CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 233 34444443 3444443 89999987522 2456666677777777788888888764
No 456
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=92.55 E-value=0.54 Score=43.94 Aligned_cols=93 Identities=8% Similarity=0.033 Sum_probs=62.0
Q ss_pred CCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc-----ccccCcCCCCc
Q 021008 121 FPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD-----IMNVSSALKDY 194 (318)
Q Consensus 121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD-----a~~l~~~l~~f 194 (318)
.+.+||.+|+ |++|..++.+|+.+ |++|+.++.+++..+.+++ .|. +.+ +...+ ...+. ...+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~-----~g~-~~v-~~~~~~~~~~~~~~~--~~~~ 214 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKL--GYEVVASTGKADAADYLKK-----LGA-KEV-IPREELQEESIKPLE--KQRW 214 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHH-----cCC-CEE-EcchhHHHHHHHhhc--cCCc
Confidence 4679999998 99999999999874 8999999999987666644 333 111 10111 11121 1368
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
|+|+-.. + . ..++...+.|+++|+++.-..
T Consensus 215 d~vld~~--g----~--~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 215 AGAVDPV--G----G--KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred CEEEECC--c----H--HHHHHHHHHhhcCCEEEEEee
Confidence 9887332 2 2 356777899999999987653
No 457
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.51 E-value=0.4 Score=38.51 Aligned_cols=91 Identities=14% Similarity=0.227 Sum_probs=54.5
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCcEEE-EEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTTTCFD-NYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL 202 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~ga~V~-gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal 202 (318)
||+.||+|..|-.-+.-..+..++.+++ .+|.+++..+.+ .+. .|.. ...|..++.. ....|+|+++.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~---~~~-~~~~-----~~~~~~~ll~-~~~~D~V~I~t- 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF---AEK-YGIP-----VYTDLEELLA-DEDVDAVIIAT- 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH---HHH-TTSE-----EESSHHHHHH-HTTESEEEEES-
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH---HHH-hccc-----chhHHHHHHH-hhcCCEEEEec-
Confidence 7999999965444332223333788877 579998665554 333 3332 4566666643 23799999887
Q ss_pred cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 203 VGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.....++. ...++-|--+++.-
T Consensus 71 ---p~~~h~~~~---~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 71 ---PPSSHAEIA---KKALEAGKHVLVEK 93 (120)
T ss_dssp ---SGGGHHHHH---HHHHHTTSEEEEES
T ss_pred ---CCcchHHHH---HHHHHcCCEEEEEc
Confidence 333444444 45566666666654
No 458
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=92.51 E-value=0.46 Score=47.62 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=55.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
..+++|+.||+|++|......+.. .|+ +|+.++.+++. ++.+... .|. .++. ..++......+|+|+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~--~G~~~V~v~~r~~~r---a~~la~~-~g~----~~~~--~~~~~~~l~~aDvVI 247 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAE--KGVRKITVANRTLER---AEELAEE-FGG----EAIP--LDELPEALAEADIVI 247 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHH--CCCCeEEEEeCCHHH---HHHHHHH-cCC----cEee--HHHHHHHhccCCEEE
Confidence 567999999999988877666654 375 89999999844 4444444 331 1211 122323345799999
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
.+.-.+-+. -..+.++...+.=+.++.++++-+
T Consensus 248 ~aT~s~~~~-i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 248 SSTGAPHPI-IGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred ECCCCCCcE-EcHHHHHHHHhhccCCCeEEEEeC
Confidence 764221111 123333333211113456777654
No 459
>PLN02712 arogenate dehydrogenase
Probab=92.45 E-value=0.63 Score=49.60 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=55.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
+.+.+|..||+|.+|.+.....++ .|.+|+++|.+... +.| .. .|. .+ ..|..++. ....|+|++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~--~G~~V~~~dr~~~~-~~A----~~-~Gv----~~-~~d~~e~~--~~~aDvViL 114 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLIS--QGHTVLAHSRSDHS-LAA----RS-LGV----SF-FLDPHDLC--ERHPDVILL 114 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCCHHH-HHH----HH-cCC----EE-eCCHHHHh--hcCCCEEEE
Confidence 566899999999877764333333 37899999998543 333 23 332 22 23333321 125899998
Q ss_pred ccccCCChhHHHHHHHHHH-HhccCCeEE
Q 021008 200 AALVGMDKDEKIRVIDHLA-KYMAPGALL 227 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~-r~LkpGg~l 227 (318)
+- +...-..+++++. ..++||.+|
T Consensus 115 av----P~~~~~~vl~~l~~~~l~~g~iV 139 (667)
T PLN02712 115 CT----SIISTENVLKSLPLQRLKRNTLF 139 (667)
T ss_pred cC----CHHHHHHHHHhhhhhcCCCCeEE
Confidence 86 4456677888875 568888744
No 460
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=92.41 E-value=0.55 Score=44.46 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=62.8
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE---ccccccCcCCCCc
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHT---TDIMNVSSALKDY 194 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~---gDa~~l~~~l~~f 194 (318)
..++.+||..|+|.+|..++.+|+. .|.. |++++-+++..+..++ .|...-+.... .....+. .-..+
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~--~G~~~v~~~~~~~~~~~~l~~-----~g~~~~~~~~~~~~~~~~~~~-~~~~~ 228 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKI--LGAKRVIAVDIDDEKLAVARE-----LGADDTINPKEEDVEKVRELT-EGRGA 228 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH-----cCCCEEecCccccHHHHHHHh-CCCCC
Confidence 3677899999999889999999986 4886 9999988876665543 23211111111 1111121 11259
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+-.. + ....+..+.+.|+++|+++.-.
T Consensus 229 d~vld~~--g-----~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAA--G-----SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEECC--C-----CHHHHHHHHHHhhcCCEEEEEc
Confidence 9988542 1 1235677789999999987654
No 461
>PRK15076 alpha-galactosidase; Provisional
Probab=92.39 E-value=0.096 Score=52.83 Aligned_cols=79 Identities=28% Similarity=0.323 Sum_probs=50.8
Q ss_pred CEEEEEccCCChHHHHH---HH-HhCCCCcEEEEEeCChHHHHHHHHHhhcCC-CCCCCeEEE-EccccccCcCCCCccE
Q 021008 123 TKIAFIGSGPLPLTSIV---LA-INHLTTTCFDNYDIDPSANSKALSLVSSDP-DLSTRMFFH-TTDIMNVSSALKDYEV 196 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~---LA-~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~-gl~~ri~f~-~gDa~~l~~~l~~fD~ 196 (318)
.+|..||+|.+|++... ++ ..-+++.+|+-+|+|++..+.+..+++... ..+..+++. +.|.. .++.+.|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~---eal~dADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRR---EALQGADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHH---HHhCCCCE
Confidence 48999999987776533 22 112367799999999999887655544310 122334554 44532 33457899
Q ss_pred EEeccccC
Q 021008 197 VFLAALVG 204 (318)
Q Consensus 197 V~~aalvg 204 (318)
|+.++-+|
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99988775
No 462
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=92.39 E-value=0.51 Score=48.16 Aligned_cols=96 Identities=15% Similarity=0.200 Sum_probs=59.0
Q ss_pred EEEEEccCCChHHHHH-HHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEeccc
Q 021008 124 KIAFIGSGPLPLTSIV-LAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLAAL 202 (318)
Q Consensus 124 rVL~IGsGplp~tai~-LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~aal 202 (318)
+|.+||.|.+|..... |++ .|.+|+++|++++..+...+... .| ..+. ...+..++...+...|+|++...
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~---~G~~V~v~drt~~~~~~l~~~~~--~g--~~~~-~~~s~~e~v~~l~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMAD---HGFTVSVYNRTPEKTDEFLAEHA--KG--KKIV-GAYSIEEFVQSLERPRKIMLMVK 72 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHhhcc--CC--CCce-ecCCHHHHHhhcCCCCEEEEECC
Confidence 4789999987766422 222 38899999999988766543211 11 1122 12234444444456798887642
Q ss_pred cCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 203 VGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 203 vgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+...-..+++.+...|++|.++ ++.
T Consensus 73 ---~~~~v~~Vi~~l~~~L~~g~iI-ID~ 97 (467)
T TIGR00873 73 ---AGAPVDAVINQLLPLLEKGDII-IDG 97 (467)
T ss_pred ---CcHHHHHHHHHHHhhCCCCCEE-EEC
Confidence 2234466888999999997655 444
No 463
>PTZ00357 methyltransferase; Provisional
Probab=92.34 E-value=1.5 Score=47.00 Aligned_cols=102 Identities=13% Similarity=0.168 Sum_probs=68.8
Q ss_pred EEEEEccCCChHHHHHHHH--hCCCCcEEEEEeCChHHHHHHHHHhhcCCCC-------CCCeEEEEccccccCcC----
Q 021008 124 KIAFIGSGPLPLTSIVLAI--NHLTTTCFDNYDIDPSANSKALSLVSSDPDL-------STRMFFHTTDIMNVSSA---- 190 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~--~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl-------~~ri~f~~gDa~~l~~~---- 190 (318)
.|+.+|+|-+|+-...|.. ...-..+|.+|+-+|.++...+.....+... +++|+++.+|..++...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999987665543 3323578999999977554443332111223 56899999999987322
Q ss_pred -------CCCccEEEeccccCC--ChhHHHHHHHHHHHhccC----CeE
Q 021008 191 -------LKDYEVVFLAALVGM--DKDEKIRVIDHLAKYMAP----GAL 226 (318)
Q Consensus 191 -------l~~fD~V~~aalvgm--~~~~k~~vl~~l~r~Lkp----Gg~ 226 (318)
.+.+|+|+.. |+|- +-|--.+.|+-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 2368988833 3321 556667888888888887 665
No 464
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.33 E-value=2.8 Score=37.24 Aligned_cols=76 Identities=9% Similarity=0.020 Sum_probs=46.7
Q ss_pred CCCEEEEEccC-CChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----------c
Q 021008 121 FPTKIAFIGSG-PLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----------S 189 (318)
Q Consensus 121 ~~~rVL~IGsG-plp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----------~ 189 (318)
.+++|+.+|++ .+|......... .|++|++++.+++......+.... ..++.++.+|+.+.. .
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLA--EGYKVAITARDQKELEEAAAELNN----KGNVLGLAADVRDEADVQRAVDAIVA 78 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHH--CCCEEEEeeCCHHHHHHHHHHHhc----cCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45789999863 344433221112 488999999998765544333332 157888999987531 1
Q ss_pred CCCCccEEEeccc
Q 021008 190 ALKDYEVVFLAAL 202 (318)
Q Consensus 190 ~l~~fD~V~~aal 202 (318)
..+.+|+|+..+.
T Consensus 79 ~~~~~d~vi~~ag 91 (237)
T PRK07326 79 AFGGLDVLIANAG 91 (237)
T ss_pred HcCCCCEEEECCC
Confidence 1236898886553
No 465
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=92.32 E-value=0.53 Score=44.67 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=63.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE-cccc----ccCcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT-TDIM----NVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~-gDa~----~l~~~l~~f 194 (318)
.++++|+..|+|++|..++.+|+.+ |.+|++++.+++..+.+++ .|...-+.... .+.. .+.. +.+
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~--~~~ 234 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE-----LGAVATVNASEVEDVAAAVRDLTG--GGA 234 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH-----hCCCEEEccccchhHHHHHHHHhC--CCC
Confidence 5778999999999999999999864 9999999999887776643 33311111111 1111 1111 168
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+|+-. ++ ....+....+.|+++|.++.-.
T Consensus 235 d~vi~~--~g-----~~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 235 HVSVDA--LG-----IPETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred CEEEEc--CC-----CHHHHHHHHHHhhcCCEEEEeC
Confidence 988843 22 1235667789999999988654
No 466
>PRK07680 late competence protein ComER; Validated
Probab=92.30 E-value=0.86 Score=42.62 Aligned_cols=88 Identities=15% Similarity=0.250 Sum_probs=53.8
Q ss_pred EEEEEccCCChHHHHHHHHhCCCC----cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 124 KIAFIGSGPLPLTSIVLAINHLTT----TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 124 rVL~IGsGplp~tai~LA~~~~~g----a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
+|.+||+|.+|.+-..-..+ .| ..|+.+|.+++..+.. ... . ..+.+ ..|..++ ....|+||+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~--~g~~~~~~v~v~~r~~~~~~~~---~~~-~---~g~~~-~~~~~~~---~~~aDiVil 68 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLE--SGAVKPSQLTITNRTPAKAYHI---KER-Y---PGIHV-AKTIEEV---ISQSDLIFI 68 (273)
T ss_pred EEEEECccHHHHHHHHHHHH--CCCCCcceEEEECCCHHHHHHH---HHH-c---CCeEE-ECCHHHH---HHhCCEEEE
Confidence 69999999887654322222 23 4789999998655433 232 1 12332 2333332 236899998
Q ss_pred ccccCCChhHHHHHHHHHHHhccCCeEEE
Q 021008 200 AALVGMDKDEKIRVIDHLAKYMAPGALLM 228 (318)
Q Consensus 200 aalvgm~~~~k~~vl~~l~r~LkpGg~lv 228 (318)
+. +...-..+++.+...++++..++
T Consensus 69 av----~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 69 CV----KPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred ec----CHHHHHHHHHHHHhhcCCCCEEE
Confidence 76 34455678888888888877544
No 467
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=92.27 E-value=0.54 Score=44.49 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=57.5
Q ss_pred CCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccCcCCCCccEEE
Q 021008 121 FPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVSSALKDYEVVF 198 (318)
Q Consensus 121 ~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~~~l~~fD~V~ 198 (318)
++.+|+..| +|++|..++.+|+.+ |++|+++.-+ +..+ .++. .|...-+.....+.. .+ .....+|+|+
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~-~~~~----~~~~-~g~~~~~~~~~~~~~~~l-~~~~~vd~vi 232 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAW--GAHVTTTCST-DAIP----LVKS-LGADDVIDYNNEDFEEEL-TERGKFDVIL 232 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCc-chHH----HHHH-hCCceEEECCChhHHHHH-HhcCCCCEEE
Confidence 489999999 699999999999864 8898887743 3333 3333 343111111110111 11 1224689988
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-.. + .. .+....+.++++|+++.-.
T Consensus 233 ~~~--g----~~--~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 233 DTV--G----GD--TEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred ECC--C----hH--HHHHHHHHhccCCEEEEec
Confidence 433 1 11 5677789999999998654
No 468
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.24 E-value=1.8 Score=43.46 Aligned_cols=102 Identities=24% Similarity=0.283 Sum_probs=63.9
Q ss_pred CCCEEEEEccCCChHHH-HHHHHhCCCCcEEEEEeCChHHHHHHHHH---hhcCCCCC---------CCeEEEEcccccc
Q 021008 121 FPTKIAFIGSGPLPLTS-IVLAINHLTTTCFDNYDIDPSANSKALSL---VSSDPDLS---------TRMFFHTTDIMNV 187 (318)
Q Consensus 121 ~~~rVL~IGsGplp~ta-i~LA~~~~~ga~V~gvDid~~ai~~Ar~~---~~~~~gl~---------~ri~f~~gDa~~l 187 (318)
...+|..||-|=.|+.. ..+|+ .|..|+|+||++..++.-++- ... .++. .+.+. +.|
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~---~G~~ViG~DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lra-Ttd---- 78 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFAS---AGFKVIGVDINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLRA-TTD---- 78 (436)
T ss_pred CceEEEEEccccccHHHHHHHHH---cCCceEeEeCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCceE-ecC----
Confidence 34899999999877754 34554 499999999999988864321 111 1111 11111 111
Q ss_pred CcCCCCccEEEeccccCC------ChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 188 SSALKDYEVVFLAALVGM------DKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 188 ~~~l~~fD~V~~aalvgm------~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+.+++..|++++.--.++ |..--....+.|++.|++|-.+++-+
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlES 128 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILES 128 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEec
Confidence 123346787765542222 22344567788999999999999988
No 469
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.20 E-value=0.52 Score=44.64 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=63.6
Q ss_pred cCCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcc----ccccCcCCCC
Q 021008 119 SRFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTD----IMNVSSALKD 193 (318)
Q Consensus 119 ~~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gD----a~~l~~~l~~ 193 (318)
..++.+|+..|+|++|..++.+|+.. |+. |++++.+++..+.+++ .|...-+....-+ +..+. ....
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~-----~ga~~v~~~~~~~~~~~i~~~~-~~~~ 237 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRL--GAERIIAMSRHEDRQALARE-----FGATDIVAERGEEAVARVRELT-GGVG 237 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH-----cCCceEecCCcccHHHHHHHhc-CCCC
Confidence 36788999999999999999999864 874 9999998866666554 3321111111101 11121 1225
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+++-.. + ....+....+.++++|+++.-.
T Consensus 238 ~d~il~~~--g-----~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 238 ADAVLECV--G-----TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CCEEEECC--C-----CHHHHHHHHHhhccCCEEEEec
Confidence 88887432 2 1346778889999999998755
No 470
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=92.18 E-value=0.93 Score=43.66 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEcccc-ccC--cCCCCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIM-NVS--SALKDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~-~l~--~~l~~fD 195 (318)
.++.+||..|+|++|..++.+|+.+ |+. |++++.+++..+.++++ |...-+.....+.. .+. .....||
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~--G~~~vi~~~~s~~~~~~~~~~-----g~~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAF--GASPIIAVDVRDEKLAKAKEL-----GATHTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHh-----CCceEecCCcccHHHHHHHHhCCCCCC
Confidence 5778999999999999999999864 777 99999998877766442 32110111111110 010 1123699
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+-.. + .. ..+.++.+.|+++|+++.-.
T Consensus 259 ~vld~v--g----~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEAL--G----KP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEeC--C----CH-HHHHHHHHHHhcCCEEEEEc
Confidence 988432 1 11 35677889999999988654
No 471
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.17 E-value=1.3 Score=41.43 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCe-EEEEccccccCcC-CC-CccE
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRM-FFHTTDIMNVSSA-LK-DYEV 196 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri-~f~~gDa~~l~~~-l~-~fD~ 196 (318)
.+++.+|||||-++|+|-..|-+ .-..|.+||..-..+.+.-+ -+.|+ .+...|+..+..+ .. ..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR-------~d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLR-------NDPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHh-------cCCcEEEEecCChhhCCHHHcccCCCe
Confidence 78999999999999999765543 23579999998877666422 22444 3444555554321 11 4567
Q ss_pred EEec-cccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 197 VFLA-ALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 197 V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+..+ ++. .-..+|-.+...++||+-++..-
T Consensus 148 ~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 148 IVIDVSFI-----SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EEEEeehh-----hHHHHHHHHHHhcCCCceEEEEe
Confidence 7655 333 33568899999999999877643
No 472
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.15 E-value=0.73 Score=41.18 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=50.3
Q ss_pred CCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC----------c
Q 021008 121 FPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS----------S 189 (318)
Q Consensus 121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~----------~ 189 (318)
.++++|.+|+ |.+|........+ .|++|+.+|.+++..+.+.+.+.. .+.++.++..|+.+.. .
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~--~G~~vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQ--KGAKLALIDLNQEKLEEAVAECGA---LGTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5689999997 5555554332222 489999999999776666555544 3467888999987631 1
Q ss_pred CCCCccEEEecc
Q 021008 190 ALKDYEVVFLAA 201 (318)
Q Consensus 190 ~l~~fD~V~~aa 201 (318)
..+..|+|+..+
T Consensus 79 ~~~~id~vi~~a 90 (253)
T PRK08217 79 DFGQLNGLINNA 90 (253)
T ss_pred HcCCCCEEEECC
Confidence 124679877544
No 473
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.14 E-value=1.1 Score=42.91 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=58.3
Q ss_pred EEEEccCCChHHHHHHHHhCCCCcEEEEEeCChH-HHHHHHHHhhcCCCCCCCeEEEE-ccccccCcCCCCccEEEeccc
Q 021008 125 IAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPS-ANSKALSLVSSDPDLSTRMFFHT-TDIMNVSSALKDYEVVFLAAL 202 (318)
Q Consensus 125 VL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~-ai~~Ar~~~~~~~gl~~ri~f~~-gDa~~l~~~l~~fD~V~~aal 202 (318)
|..||+|..|.+..+......--..++.+|++++ +...+..+-.....+ ...++.. +|. .++...|+|++.+-
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~~----~~l~~aDiVIitag 75 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-ATGTIVRGGDY----ADAADADIVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-CCCeEEECCCH----HHhCCCCEEEEcCC
Confidence 4679999888776654433211257999999886 334444443331112 2344443 432 24558999998876
Q ss_pred c----CCChhH----HHHHHHHHHHhcc---CCeEEEEEc
Q 021008 203 V----GMDKDE----KIRVIDHLAKYMA---PGALLMLRS 231 (318)
Q Consensus 203 v----gm~~~~----k~~vl~~l~r~Lk---pGg~lv~r~ 231 (318)
+ +|+..+ -..++.++.+.++ |.|.+++-+
T Consensus 76 ~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 76 APRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 5 343222 3445555555444 778776655
No 474
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=92.12 E-value=0.055 Score=45.53 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=38.9
Q ss_pred CeEEEEccccccCcCC-CCccEEEeccccCC-Chh-HHHHHHHHHHHhccCCeEEEEEcCCC
Q 021008 176 RMFFHTTDIMNVSSAL-KDYEVVFLAALVGM-DKD-EKIRVIDHLAKYMAPGALLMLRSAHG 234 (318)
Q Consensus 176 ri~f~~gDa~~l~~~l-~~fD~V~~aalvgm-~~~-~k~~vl~~l~r~LkpGg~lv~r~~~g 234 (318)
++++..||+.+....+ ..||++|++++-+- +++ =-.+++..|++.++|||+++.-+..|
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~ 93 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAG 93 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechH
Confidence 4577889998744443 48999999987632 111 12679999999999999998877544
No 475
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.08 E-value=0.56 Score=44.56 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc---cccCcCCCCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI---MNVSSALKDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa---~~l~~~l~~fD 195 (318)
.++.+||..|+|++|..++.+|+.+ |. .|++++-+++..+.++++ |...-+.....+. .++. ..+.+|
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~-~~~~vd 233 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKKM-----GADVVINPREEDVVEVKSVT-DGTGVD 233 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHh-----CcceeeCcccccHHHHHHHc-CCCCCC
Confidence 5788999999998899999999864 77 788888888777666543 3211111111111 1121 123689
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+-... .......+.+.|+++|+++.-.
T Consensus 234 ~vld~~g-------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 234 VVLEMSG-------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEEECCC-------CHHHHHHHHHHhccCCEEEEEc
Confidence 9885431 1235667788999999987654
No 476
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=92.06 E-value=0.97 Score=42.49 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=68.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCC--CCCCeEEEEccccc-cCcCC--CCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPD--LSTRMFFHTTDIMN-VSSAL--KDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~g--l~~ri~f~~gDa~~-l~~~l--~~f 194 (318)
.....|+.+||| +-.-+..+.. .++.++.-||. |+.++.-++++.+ .| ...+.+++..|..+ +...+ ..|
T Consensus 80 ~g~~qvV~LGaG-lDTr~~Rl~~--~~~~~~~EvD~-P~v~~~K~~~l~~-~~~~~~~~~~~v~~Dl~~~w~~~L~~~gf 154 (260)
T TIGR00027 80 AGIRQVVILGAG-LDTRAYRLPW--PDGTRVFEVDQ-PAVLAFKEKVLAE-LGAEPPAHRRAVPVDLRQDWPAALAAAGF 154 (260)
T ss_pred cCCcEEEEeCCc-cccHHHhcCC--CCCCeEEECCC-hHHHHHHHHHHHH-cCCCCCCceEEeccCchhhHHHHHHhCCC
Confidence 345789999998 6544444421 23455555555 4466666667665 33 35788999999862 11111 245
Q ss_pred c----EEEe-cccc-CCChhHHHHHHHHHHHhccCCeEEEEEcC
Q 021008 195 E----VVFL-AALV-GMDKDEKIRVIDHLAKYMAPGALLMLRSA 232 (318)
Q Consensus 195 D----~V~~-aalv-gm~~~~k~~vl~~l~r~LkpGg~lv~r~~ 232 (318)
| .+|+ ..++ =++.+.-.++++.+.+...||+.+++...
T Consensus 155 d~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 155 DPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 5 4444 3332 22667778899999999889999998763
No 477
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.97 E-value=0.9 Score=39.94 Aligned_cols=116 Identities=21% Similarity=0.256 Sum_probs=72.8
Q ss_pred CCcChhhHHHhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHH-hCCCC-cEEEEEeCChHHHHHHHHHhhcCCCC
Q 021008 96 IFPYYSNYIKLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAI-NHLTT-TCFDNYDIDPSANSKALSLVSSDPDL 173 (318)
Q Consensus 96 ~fpY~~ny~~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~-~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl 173 (318)
.-||-..--..++.-...+. ..+..+.+|+|||-+ - +.+|. ++ | -.-+|++.+|-.+..+|-.+-+ .|.
T Consensus 50 cvPYVpAtteQv~nVLSll~---~n~~GklvDlGSGDG-R--iVlaaar~--g~~~a~GvELNpwLVaysrl~a~R-~g~ 120 (199)
T KOG4058|consen 50 CVPYVPATTEQVENVLSLLR---GNPKGKLVDLGSGDG-R--IVLAAARC--GLRPAVGVELNPWLVAYSRLHAWR-AGC 120 (199)
T ss_pred cccccCccHHHHHHHHHHcc---CCCCCcEEeccCCCc-e--eehhhhhh--CCCcCCceeccHHHHHHHHHHHHH-Hhc
Confidence 34655544444444444332 245579999999953 2 33332 22 4 4568999999999999887777 899
Q ss_pred CCCeEEEEccccccCcCCCCcc--EEEec-cccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 174 STRMFFHTTDIMNVSSALKDYE--VVFLA-ALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 174 ~~ri~f~~gDa~~l~~~l~~fD--~V~~a-alvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
+++.+|..-|.... ++..|. +||.+ ++.+ +.++| +..-|+.+..++-
T Consensus 121 ~k~trf~RkdlwK~--dl~dy~~vviFgaes~m~-dLe~K------L~~E~p~nt~vva 170 (199)
T KOG4058|consen 121 AKSTRFRRKDLWKV--DLRDYRNVVIFGAESVMP-DLEDK------LRTELPANTRVVA 170 (199)
T ss_pred ccchhhhhhhhhhc--cccccceEEEeehHHHHh-hhHHH------HHhhCcCCCeEEE
Confidence 99999999988764 556565 33422 2211 22333 3446777776653
No 478
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.96 E-value=0.79 Score=41.27 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=24.4
Q ss_pred CCCCEEEEEccCCChHHHH-HHHHhCCCCc-EEEEEeCC
Q 021008 120 RFPTKIAFIGSGPLPLTSI-VLAINHLTTT-CFDNYDID 156 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai-~LA~~~~~ga-~V~gvDid 156 (318)
-...+|+.||+|++|-... .|++ .|. +++-+|.|
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~---~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAG---AGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHH---cCCCeEEEecCC
Confidence 3578999999997655433 3443 465 89999988
No 479
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=91.94 E-value=0.42 Score=46.05 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=63.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcE-EEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTC-FDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~-V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f 194 (318)
.++.+||..|+|++|..++.+|+. .|++ |++++.+++..+.+++ .|...-+.....+. ..+. ....+
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~~-----~g~~~vv~~~~~~~~~~l~~~~-~~~~v 252 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELARR-----FGATHTVNASEDDAVEAVRDLT-DGRGA 252 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH-----hCCeEEeCCCCccHHHHHHHHc-CCCCC
Confidence 678899999999999999999986 4885 9999999887766643 33311111111111 1111 12369
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+++-.. + ....+....+.|+++|+++.-.
T Consensus 253 d~vld~~--~-----~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 253 DYAFEAV--G-----RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CEEEEcC--C-----ChHHHHHHHHHhhcCCeEEEEe
Confidence 9887433 1 1245677889999999988654
No 480
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=91.93 E-value=1.2 Score=44.92 Aligned_cols=76 Identities=28% Similarity=0.314 Sum_probs=50.7
Q ss_pred CEEEEEccCCChHHHHHHHH-----hCCCCcEEEEEeCC-hHHHHH----HHHHhhcCCCCCCCeEEEEccccccCcCCC
Q 021008 123 TKIAFIGSGPLPLTSIVLAI-----NHLTTTCFDNYDID-PSANSK----ALSLVSSDPDLSTRMFFHTTDIMNVSSALK 192 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~-----~~~~ga~V~gvDid-~~ai~~----Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~ 192 (318)
.||.+||.|.. +|...+-. .-+++.+|+-+||| ++.++. +++.++. .|. .+++... .|....+.
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~-~~~--~~~v~~t--~d~~~al~ 74 (419)
T cd05296 1 MKLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKK-AGL--PIKVHLT--TDRREALE 74 (419)
T ss_pred CEEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHh-hCC--CeEEEEe--CCHHHHhC
Confidence 38999999974 77544332 12467999999999 787755 6666666 443 4555432 23334556
Q ss_pred CccEEEeccccC
Q 021008 193 DYEVVFLAALVG 204 (318)
Q Consensus 193 ~fD~V~~aalvg 204 (318)
+-|+|+++.-+|
T Consensus 75 gadfVi~~~~vg 86 (419)
T cd05296 75 GADFVFTQIRVG 86 (419)
T ss_pred CCCEEEEEEeeC
Confidence 789999888774
No 481
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=91.90 E-value=0.7 Score=44.84 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f 194 (318)
.++.+|+..|+|++|..++.+|+. .|+ .|+++|.+++..+.++++ |. .-+.+...+. .++. . ..+
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~--~G~~~vi~~~~~~~~~~~~~~~-----g~-~~v~~~~~~~~~~i~~~~-~-~~~ 244 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAIL--RGASRVYVVDHVPERLDLAESI-----GA-IPIDFSDGDPVEQILGLE-P-GGV 244 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHc-----CC-eEeccCcccHHHHHHHhh-C-CCC
Confidence 678999999999999999999986 486 799999998887777653 22 1111111111 1121 1 368
Q ss_pred cEEEeccccCCCh------hHHHHHHHHHHHhccCCeEEEEE
Q 021008 195 EVVFLAALVGMDK------DEKIRVIDHLAKYMAPGALLMLR 230 (318)
Q Consensus 195 D~V~~aalvgm~~------~~k~~vl~~l~r~LkpGg~lv~r 230 (318)
|+|+-.. +-.. ..+...+.+..+.++++|+++.-
T Consensus 245 d~v~d~~--g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 245 DRAVDCV--GYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred CEEEECC--CCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 9887432 1010 12345678888999999998654
No 482
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=91.89 E-value=0.51 Score=45.97 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=38.9
Q ss_pred CCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHH
Q 021008 120 RFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSL 166 (318)
Q Consensus 120 ~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~ 166 (318)
.++.+|+..|+ |++|..++.+|+. .|+.++.++.+++..+.++++
T Consensus 192 ~~g~~vlV~ga~g~iG~a~~~lak~--~G~~vv~~~~s~~~~~~~~~~ 237 (393)
T cd08246 192 KPGDNVLIWGASGGLGSMAIQLARA--AGANPVAVVSSEEKAEYCRAL 237 (393)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHc
Confidence 67889999997 9999999999986 499999999999888888763
No 483
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=91.88 E-value=0.44 Score=48.29 Aligned_cols=77 Identities=25% Similarity=0.254 Sum_probs=53.0
Q ss_pred CEEEEEccCCChHHHHHH---HHh--CCCCcEEEEEeCChHHHHH----HHHHhhcCCCCCCCeEEEEccccccCcCCCC
Q 021008 123 TKIAFIGSGPLPLTSIVL---AIN--HLTTTCFDNYDIDPSANSK----ALSLVSSDPDLSTRMFFHTTDIMNVSSALKD 193 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~L---A~~--~~~ga~V~gvDid~~ai~~----Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~ 193 (318)
.||.+||.|.. +|...+ ++. -+++.+|+=+|||++.++. |++.+++ .|. .+++... +|....+.+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~-~g~--~~~v~~T--tdr~eAl~g 74 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKE-NYP--EIKFVYT--TDPEEAFTD 74 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHh-hCC--CeEEEEE--CCHHHHhCC
Confidence 48999999964 775432 222 2578999999999988887 4555555 454 4444332 445556678
Q ss_pred ccEEEeccccCC
Q 021008 194 YEVVFLAALVGM 205 (318)
Q Consensus 194 fD~V~~aalvgm 205 (318)
-|+|+++.-||-
T Consensus 75 ADfVi~~irvGg 86 (437)
T cd05298 75 ADFVFAQIRVGG 86 (437)
T ss_pred CCEEEEEeeeCC
Confidence 999999888863
No 484
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=91.79 E-value=0.85 Score=42.73 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=57.9
Q ss_pred cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE--ccccccCcCCCCcc
Q 021008 119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT--TDIMNVSSALKDYE 195 (318)
Q Consensus 119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~--gDa~~l~~~l~~fD 195 (318)
..++.+|+.+|+ |++|..++.+|+.+ |++|++++.+ +.+ +. .|...-+.... ..+..+. ..+|
T Consensus 160 ~~~g~~vlI~g~~g~vg~~~~~~a~~~--G~~v~~~~~~----~~~----~~-~g~~~~~~~~~~~~~l~~~~---~~~d 225 (325)
T cd08264 160 LGPGETVVVFGASGNTGIFAVQLAKMM--GAEVIAVSRK----DWL----KE-FGADEVVDYDEVEEKVKEIT---KMAD 225 (325)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHc--CCeEEEEeHH----HHH----HH-hCCCeeecchHHHHHHHHHh---CCCC
Confidence 367899999997 99999999999864 8899888632 222 23 33311111100 0111221 4689
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+-.. + . ..+....+.|+++|+++.-.
T Consensus 226 ~vl~~~--g----~--~~~~~~~~~l~~~g~~v~~g 253 (325)
T cd08264 226 VVINSL--G----S--SFWDLSLSVLGRGGRLVTFG 253 (325)
T ss_pred EEEECC--C----H--HHHHHHHHhhccCCEEEEEe
Confidence 887432 1 2 36778889999999998654
No 485
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=91.73 E-value=1.4 Score=40.09 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=59.3
Q ss_pred cCCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC--cCCCCcc
Q 021008 119 SRFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS--SALKDYE 195 (318)
Q Consensus 119 ~~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~--~~l~~fD 195 (318)
..++.+|+..|+ |++|..++.+|+. .|++|+.++.++ ..+.++ . .|.. .++...-.+.. .....+|
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~-~~~~~~----~-~g~~---~~~~~~~~~~~~~~~~~~~d 210 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKA--RGARVIATASAA-NADFLR----S-LGAD---EVIDYTKGDFERAAAPGGVD 210 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHH--cCCEEEEEecch-hHHHHH----H-cCCC---EEEeCCCCchhhccCCCCce
Confidence 367899999995 8899999999986 489999988766 444443 2 3331 11111111111 1223688
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+++-.. + . .......+.++++|.++.-.
T Consensus 211 ~v~~~~--~----~--~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 211 AVLDTV--G----G--ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred EEEECC--c----h--HHHHHHHHHHhcCcEEEEEc
Confidence 887432 1 1 15667788999999987654
No 486
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.73 E-value=0.34 Score=49.12 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=50.7
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccC
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVS 188 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~ 188 (318)
.-||+||+|+ |+-+++.++. .+-.||+++.=..+.+.||+...+ -|.+++|+++.---+++.
T Consensus 68 v~vLdigtGT-GLLSmMAvra--gaD~vtA~EvfkPM~d~arkI~~k-ng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 68 VFVLDIGTGT-GLLSMMAVRA--GADSVTACEVFKPMVDLARKIMHK-NGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEEccCCc-cHHHHHHHHh--cCCeEEeehhhchHHHHHHHHHhc-CCCccceeeeccccceee
Confidence 4789999995 7777766653 244799999999999999999999 999999999876665553
No 487
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=91.70 E-value=0.97 Score=42.50 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=63.6
Q ss_pred CCCCEEEEEcc-CCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEE
Q 021008 120 RFPTKIAFIGS-GPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVF 198 (318)
Q Consensus 120 ~~~~rVL~IGs-Gplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~ 198 (318)
.++.+|+..|+ |++|..++.+|+. .|++|+.++.+++..+.++++ .. .=+..+ .+ ..++.. ++.+|+++
T Consensus 161 ~~~~~vlI~g~~g~~g~~~~~la~~--~g~~vi~~~~~~~~~~~~~~~-~~-~~~~~~-~~-~~~v~~----~~~~d~~l 230 (334)
T PRK13771 161 KKGETVLVTGAGGGVGIHAIQVAKA--LGAKVIAVTSSESKAKIVSKY-AD-YVIVGS-KF-SEEVKK----IGGADIVI 230 (334)
T ss_pred CCCCEEEEECCCccHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHH-HH-HhcCch-hH-HHHHHh----cCCCcEEE
Confidence 67889999999 8899999999986 499999999999888888766 21 101111 11 011111 23588887
Q ss_pred eccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 199 LAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 199 ~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
-. ++ . ..+..+.+.+++||+++.-.
T Consensus 231 d~--~g----~--~~~~~~~~~l~~~G~~v~~g 255 (334)
T PRK13771 231 ET--VG----T--PTLEESLRSLNMGGKIIQIG 255 (334)
T ss_pred Ec--CC----h--HHHHHHHHHHhcCCEEEEEe
Confidence 33 22 1 24667788999999987654
No 488
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=91.69 E-value=1.9 Score=41.33 Aligned_cols=109 Identities=14% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCCEEEEEccCCChHHHHH-HHHhCCCCc-EEEEEeCCh-------------------HHHHHHHHHhhcCCCCCCCeEE
Q 021008 121 FPTKIAFIGSGPLPLTSIV-LAINHLTTT-CFDNYDIDP-------------------SANSKALSLVSSDPDLSTRMFF 179 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~-LA~~~~~ga-~V~gvDid~-------------------~ai~~Ar~~~~~~~gl~~ri~f 179 (318)
...+||.||+|++|..... ||. .|. +|+-+|-|. ...+.+.+.+++ ..-.-+++.
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLal---aGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~e-LNp~V~V~~ 93 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLIL---AGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAE-LNPYVPVTV 93 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHH---cCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHH-HCCCCEEEE
Confidence 5689999999977665432 332 454 588888663 122333334444 333345555
Q ss_pred EEccccccCcCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCccccccc
Q 021008 180 HTTDIMNVSSALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGARAFLYP 241 (318)
Q Consensus 180 ~~gDa~~l~~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~r~~lYP 241 (318)
+.+...+ ..+.+||+|+.... +.+.+. .+.++.+. .+-.++.-...|+.+..|.
T Consensus 94 ~~~~~~~--~~l~~fdvVV~~~~---~~~~~~-~in~~c~~--~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 94 STGPLTT--DELLKFQVVVLTDA---SLEDQL-KINEFCHS--PGIKFISADTRGLFGSIFC 147 (286)
T ss_pred EeccCCH--HHHhcCCEEEEecC---CHHHHH-HHHHHHHH--cCCEEEEEeccccEEEEEe
Confidence 5554221 23458998886542 333333 45555443 5556777777787765554
No 489
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=91.66 E-value=0.88 Score=42.56 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=63.0
Q ss_pred CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc----cccCcCCCCc
Q 021008 120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI----MNVSSALKDY 194 (318)
Q Consensus 120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa----~~l~~~l~~f 194 (318)
.++.+||..| +|++|..++.+|+. .|+.|++++.+++..+.+++. .|...-+.....+. ..+. . ..+
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~v~~~~-~-~~~ 215 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKL--LGARVVGIAGSDEKCRWLVEE----LGFDAAINYKTPDLAEALKEAA-P-DGI 215 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhh----cCCceEEecCChhHHHHHHHhc-c-CCc
Confidence 5678999999 68899999999986 489999999999877766542 22211111111111 1121 1 368
Q ss_pred cEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 195 EVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 195 D~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
|+++-.. + ...+....+.++++|+++.-.
T Consensus 216 d~vi~~~--g------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 216 DVYFDNV--G------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred eEEEEcc--h------HHHHHHHHHhcCCCceEEEEe
Confidence 9887332 2 136777789999999987654
No 490
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=91.59 E-value=0.51 Score=44.93 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCc-EEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccc----cCcCCC-C
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTT-CFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMN----VSSALK-D 193 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga-~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~----l~~~l~-~ 193 (318)
.++++|+..|+|++|..++.+|+.. |+ .|+.++.+++..+.+++ .|.. .++...-.+ +..... .
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~-----~g~~---~~~~~~~~~~~~~~~~~~~~~ 243 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKAL--GPANIIVVDIDEAKLEAAKA-----AGAD---VVVNGSDPDAAKRIIKAAGGG 243 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH-----hCCc---EEecCCCccHHHHHHHHhCCC
Confidence 4678999999999999999999864 88 79999998887776644 3331 111111001 110111 5
Q ss_pred ccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 194 YEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 194 fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+|+-.. | ....+....+.|+++|+++.-.
T Consensus 244 ~d~vid~~--g-----~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 244 VDAVIDFV--N-----NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CcEEEECC--C-----CHHHHHHHHHHhhcCCeEEEEC
Confidence 88888432 1 1235777889999999998654
No 491
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.57 E-value=1.1 Score=42.32 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=54.7
Q ss_pred CEEEEEccCCChHHHHHHHHhC--CCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEec
Q 021008 123 TKIAFIGSGPLPLTSIVLAINH--LTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFLA 200 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~--~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~a 200 (318)
.+|.+||+|.+|.+...-..+. .+..+|..++.+++. ..+++... .+ .+. ...|..++ ....|+|+++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~--~~~~l~~~-~~---~~~-~~~~~~e~---~~~aDvVila 71 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNE--HFNQLYDK-YP---TVE-LADNEAEI---FTKCDHSFIC 71 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHH--HHHHHHHH-cC---CeE-EeCCHHHH---HhhCCEEEEe
Confidence 3799999998876543322221 112579999987642 22333222 11 122 12333332 2368999977
Q ss_pred cccCCChhHHHHHHHHHHHhccCCeEEEEEcCCCc
Q 021008 201 ALVGMDKDEKIRVIDHLAKYMAPGALLMLRSAHGA 235 (318)
Q Consensus 201 alvgm~~~~k~~vl~~l~r~LkpGg~lv~r~~~g~ 235 (318)
. +...-..++.++...+++|..++. -..|.
T Consensus 72 v----pp~~~~~vl~~l~~~l~~~~~ivS-~~aGi 101 (277)
T PRK06928 72 V----PPLAVLPLLKDCAPVLTPDRHVVS-IAAGV 101 (277)
T ss_pred c----CHHHHHHHHHHHHhhcCCCCEEEE-ECCCC
Confidence 5 334556788888888887765433 33443
No 492
>PLN02602 lactate dehydrogenase
Probab=91.57 E-value=1.9 Score=42.51 Aligned_cols=104 Identities=15% Similarity=0.277 Sum_probs=61.4
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHH-HHHHHHHhhcCCCCCCCeEEEE-ccccccCcCCCCccEEEec
Q 021008 123 TKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSA-NSKALSLVSSDPDLSTRMFFHT-TDIMNVSSALKDYEVVFLA 200 (318)
Q Consensus 123 ~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~a-i~~Ar~~~~~~~gl~~ri~f~~-gDa~~l~~~l~~fD~V~~a 200 (318)
.||..||+|..|.+..+..........+.-+|++++. -..+..+... ..+-..+++.. +|-. +++..|+|++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~-~~~~~~~~i~~~~dy~----~~~daDiVVit 112 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHA-AAFLPRTKILASTDYA----VTAGSDLCIVT 112 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhh-hhcCCCCEEEeCCCHH----HhCCCCEEEEC
Confidence 7999999999888876655432234579999998853 3455555443 22323345543 3422 34589999887
Q ss_pred ccc----CCChh----HHHHHHHHHHHhc---cCCeEEEEEc
Q 021008 201 ALV----GMDKD----EKIRVIDHLAKYM---APGALLMLRS 231 (318)
Q Consensus 201 alv----gm~~~----~k~~vl~~l~r~L---kpGg~lv~r~ 231 (318)
+-. ||+.. .-.+++.++.+.+ .|.|.+++-+
T Consensus 113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 655 44321 2234455555444 4677766644
No 493
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.57 E-value=0.26 Score=49.94 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=29.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCCh
Q 021008 121 FPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDP 157 (318)
Q Consensus 121 ~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~ 157 (318)
.+++|+.||+||.|+++...+++ .|..|+-+|..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 56899999999999999877765 488999998765
No 494
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.55 E-value=1.8 Score=42.10 Aligned_cols=107 Identities=18% Similarity=0.262 Sum_probs=61.1
Q ss_pred CCCEEEEEcc-CCChHHHHHHHHhCCCCc-----EEEEEeCChH---HHHHHHHHhhcCCCCCCCeEEEEccccccCcCC
Q 021008 121 FPTKIAFIGS-GPLPLTSIVLAINHLTTT-----CFDNYDIDPS---ANSKALSLVSSDPDLSTRMFFHTTDIMNVSSAL 191 (318)
Q Consensus 121 ~~~rVL~IGs-Gplp~tai~LA~~~~~ga-----~V~gvDid~~---ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l 191 (318)
.|-||..||+ |..|.+..........-. .++-+|+.+. +...|..+..........+++..+|- .++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~----~~~ 77 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPE----EAF 77 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChH----HHh
Confidence 5789999998 998888655443211112 7999999642 45566555544112223455543333 344
Q ss_pred CCccEEEecccc----CCChhH----HHHHHH----HHHHhccCCeEEEEEc
Q 021008 192 KDYEVVFLAALV----GMDKDE----KIRVID----HLAKYMAPGALLMLRS 231 (318)
Q Consensus 192 ~~fD~V~~aalv----gm~~~~----k~~vl~----~l~r~LkpGg~lv~r~ 231 (318)
...|+|++.+-+ ||+..+ -.++++ .+.+.-.|.|++++-+
T Consensus 78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 578988877655 444322 233444 4444333478777765
No 495
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=91.55 E-value=0.54 Score=44.37 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=62.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCC-cEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEE---ccccccCcCCCCcc
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTT-TCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHT---TDIMNVSSALKDYE 195 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~g-a~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~---gDa~~l~~~l~~fD 195 (318)
.++++||..|+|++|..++.+|+.. | .+|++++-+++..+..++ .|...-+.... .....+. ....+|
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~--g~~~v~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~i~~~~-~~~~~d 237 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRAL--TPATVIAVDRSEEALKLAER-----LGADHVLNASDDVVEEVRELT-GGRGAD 237 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHHH-----hCCcEEEcCCccHHHHHHHHh-CCCCCC
Confidence 5689999999999999999999864 6 899999998876665543 33311111110 0011121 113699
Q ss_pred EEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 196 VVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 196 ~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
+|+-.. + . ...++...+.|+++|+++.-.
T Consensus 238 vvld~~--g----~-~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 238 AVIDFV--G----S-DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred EEEEcC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 888543 1 1 235777789999999998654
No 496
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=91.46 E-value=0.5 Score=43.15 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=61.9
Q ss_pred CCCCEEEEEc-cCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEc--cc----cccCcCCC
Q 021008 120 RFPTKIAFIG-SGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTT--DI----MNVSSALK 192 (318)
Q Consensus 120 ~~~~rVL~IG-sGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~g--Da----~~l~~~l~ 192 (318)
.++.+||..| +|++|..++.+|+. .|+.|++++.+++..+.+++ .|. +. .+... +. ..+. ...
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~-----~g~-~~-~~~~~~~~~~~~~~~~~-~~~ 204 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKA--LGATVIGTVSSEEKAELARA-----AGA-DH-VINYRDEDFVERVREIT-GGR 204 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH-----CCC-CE-EEeCCchhHHHHHHHHc-CCC
Confidence 5789999999 68899999999986 48999999999877666543 333 11 11111 11 1111 123
Q ss_pred CccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEEEc
Q 021008 193 DYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLMLRS 231 (318)
Q Consensus 193 ~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~r~ 231 (318)
.+|+|+-.. + . ..+....+.|+++|+++.-.
T Consensus 205 ~~d~vl~~~--~----~--~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 205 GVDVVYDGV--G----K--DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CeeEEEECC--C----c--HhHHHHHHhhccCcEEEEEe
Confidence 689888432 1 1 24566778999999987654
No 497
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.43 E-value=2.5 Score=38.88 Aligned_cols=116 Identities=10% Similarity=0.154 Sum_probs=74.6
Q ss_pred HhhHHHHHHHhhcccCCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccc
Q 021008 105 KLSQLEFNILTQHCSRFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDI 184 (318)
Q Consensus 105 ~L~~~E~~~l~~~~~~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa 184 (318)
+|...-...|...-..++++||-+|.- -|.|.-.++.- -+...|.+|+.++.....=-.++++ ..+|-=+.+||
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAa-sGTTvSHVSDI-v~~G~iYaVEfs~R~~reLl~~a~~----R~Ni~PIL~DA 133 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAA-SGTTVSHVSDI-VGEGRIYAVEFSPRPMRELLDVAEK----RPNIIPILEDA 133 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeecc-CCCcHhHHHhc-cCCCcEEEEEecchhHHHHHHHHHh----CCCceeeeccc
Confidence 444444444433334889999999996 57777777753 3468899999999665444333333 36677788898
Q ss_pred cccC---cCCCCccEEEeccccCCChhHHHHHHHHHHHhccCCeEEEE
Q 021008 185 MNVS---SALKDYEVVFLAALVGMDKDEKIRVIDHLAKYMAPGALLML 229 (318)
Q Consensus 185 ~~l~---~~l~~fD~V~~aalvgm~~~~k~~vl~~l~r~LkpGg~lv~ 229 (318)
..-. .-....|+||.+-- ++.+-.=+..+....||+||.+++
T Consensus 134 ~~P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 134 RKPEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred CCcHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEE
Confidence 7521 11236799997752 223333455667888999995544
No 498
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.40 E-value=0.39 Score=53.09 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCC
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDID 156 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid 156 (318)
..++||+.||+||.|+++...+.+ .|..||-+|-.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAF 338 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeC
Confidence 457999999999999998665554 48889988864
No 499
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.39 E-value=2.8 Score=37.42 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=48.3
Q ss_pred CCCEEEEEccC-CChHHHHHHHHhCC-CCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCc---------
Q 021008 121 FPTKIAFIGSG-PLPLTSIVLAINHL-TTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSS--------- 189 (318)
Q Consensus 121 ~~~rVL~IGsG-plp~tai~LA~~~~-~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~--------- 189 (318)
.+++|+..|++ .+|.. +|+.+. .|++|+.++.+++..+...+..+. .+.++.++.+|+.+...
T Consensus 6 ~~~~vlItGa~g~iG~~---la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (250)
T PRK12939 6 AGKRALVTGAARGLGAA---FAEALAEAGATVAFNDGLAAEARELAAALEA---AGGRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCCEEEEeCCCChHHHH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46899999974 33333 333221 489999999998766655444443 24679999999986321
Q ss_pred -CCCCccEEEeccc
Q 021008 190 -ALKDYEVVFLAAL 202 (318)
Q Consensus 190 -~l~~fD~V~~aal 202 (318)
..+..|+|+..+.
T Consensus 80 ~~~~~id~vi~~ag 93 (250)
T PRK12939 80 AALGGLDGLVNNAG 93 (250)
T ss_pred HHcCCCCEEEECCC
Confidence 1146898876543
No 500
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.38 E-value=0.72 Score=38.73 Aligned_cols=74 Identities=7% Similarity=-0.005 Sum_probs=42.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCcEEEEEeCChHHHHHHHHHhhcCCCCCCCeEEEEccccccCcCCCCccEEEe
Q 021008 120 RFPTKIAFIGSGPLPLTSIVLAINHLTTTCFDNYDIDPSANSKALSLVSSDPDLSTRMFFHTTDIMNVSSALKDYEVVFL 199 (318)
Q Consensus 120 ~~~~rVL~IGsGplp~tai~LA~~~~~ga~V~gvDid~~ai~~Ar~~~~~~~gl~~ri~f~~gDa~~l~~~l~~fD~V~~ 199 (318)
..+++|+.||+|.+|.+........ .+..|+.+|.+++..+...+.... .+ +.....|..+ ...++|+|++
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~-~~----~~~~~~~~~~---~~~~~Dvvi~ 87 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGE-LG----IAIAYLDLEE---LLAEADLIIN 87 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhh-cc----cceeecchhh---ccccCCEEEe
Confidence 4578999999997666544333322 146899999998765443222221 00 1122222222 2457999997
Q ss_pred ccc
Q 021008 200 AAL 202 (318)
Q Consensus 200 aal 202 (318)
..-
T Consensus 88 ~~~ 90 (155)
T cd01065 88 TTP 90 (155)
T ss_pred CcC
Confidence 653
Done!