Query 021011
Match_columns 318
No_of_seqs 232 out of 697
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 11:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 4.3E-33 1.5E-37 218.0 5.7 67 245-312 9-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1E-32 3.5E-37 216.8 5.4 69 243-312 10-78 (78)
3 2rpr_A Flywch-type zinc finger 63.4 3.7 0.00013 31.2 2.3 49 250-311 24-74 (87)
4 1cz6_A Protein (androctonin); 24.4 18 0.00062 22.6 0.3 7 272-278 16-22 (26)
5 1xiw_B T-cell surface glycopro 18.9 39 0.0013 25.5 1.2 49 251-308 17-75 (79)
6 1odh_A MGCM1; transcription fa 16.1 1.1E+02 0.0037 27.1 3.4 38 273-313 122-159 (174)
7 1xiw_A T-cell surface glycopro 13.3 29 0.001 28.3 -0.9 27 250-276 32-77 (105)
8 2v9t_A Roundabout homolog 1; s 10.1 90 0.0031 22.7 1.0 53 250-308 37-115 (117)
9 2aw2_A B and T lymphocyte atte 7.0 1.8E+02 0.0063 24.3 1.6 46 255-308 63-116 (120)
10 2ysa_A Retinoblastoma-binding 5.5 2.3E+02 0.0078 20.3 1.3 23 266-288 1-29 (55)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.97 E-value=4.3e-33 Score=217.98 Aligned_cols=67 Identities=60% Similarity=1.142 Sum_probs=63.4
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCccccccCCCCCCccccceeecCCCCcEEEEEEeccCCCCCCC
Q 021011 245 KLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP 312 (318)
Q Consensus 245 ~~~di~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H~~~~ 312 (318)
...++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|+
T Consensus 9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 4578999999999999999999999999999995 899999999999999999999999999999864
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.97 E-value=1e-32 Score=216.80 Aligned_cols=69 Identities=51% Similarity=1.013 Sum_probs=64.1
Q ss_pred cCCCCCCCCCCccccccCCCCCCCCCCCccccccCCCCCCccccceeecCCCCcEEEEEEeccCCCCCCC
Q 021011 243 SNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLP 312 (318)
Q Consensus 243 s~~~~di~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H~~~~ 312 (318)
+....++++|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 10 t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 10 TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 344568999999999999999999999999999995 899999999999999999999999999999863
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=63.35 E-value=3.7 Score=31.19 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=30.8
Q ss_pred CCCCccccccCCCCCCCCCCCccccccCCC--CCCccccceeecCCCCcEEEEEEeccCCCCCC
Q 021011 250 PPDDYSWRKYGQKPIKGSPHPRGYYKCSSM--RGCPARKHVERCLEEPTMLIVTYEGEHNHPRL 311 (318)
Q Consensus 250 ~~DGy~WRKYGQK~Ikgs~~pRsYYRCs~~--~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H~~~ 311 (318)
.-|||...+--. ...+.|.+|+.. .+|.|+=.... ++ +...+.|||+..
T Consensus 24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCC
T ss_pred EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCc
Confidence 358987775321 123689999962 48999754432 22 235789999753
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=24.38 E-value=18 Score=22.60 Aligned_cols=7 Identities=57% Similarity=1.459 Sum_probs=6.0
Q ss_pred cccccCC
Q 021011 272 GYYKCSS 278 (318)
Q Consensus 272 sYYRCs~ 278 (318)
+||+|++
T Consensus 16 cyykctn 22 (26)
T 1cz6_A 16 CYYKCTN 22 (26)
T ss_dssp CEEEECC
T ss_pred eEEEccC
Confidence 6999995
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=18.86 E-value=39 Score=25.49 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=27.0
Q ss_pred CCCccccccCCCC--------CC--CCCCCccccccCCCCCCccccceeecCCCCcEEEEEEeccCCC
Q 021011 251 PDDYSWRKYGQKP--------IK--GSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 308 (318)
Q Consensus 251 ~DGy~WRKYGQK~--------Ik--gs~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H 308 (318)
.+++.|-|-|... +. ...-||+||.|... +.+. .....+.|.|.=..||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~------~~~~---~~~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT------DIYK---DKESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC------CCCC---cccEEEEEEhhhcCCc
Confidence 4568899887641 22 23459999999521 1111 0012466888877766
No 6
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=16.06 E-value=1.1e+02 Score=27.12 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=22.9
Q ss_pred ccccCCCCCCccccceeecCCCCcEEEEEEeccCCCCCCCC
Q 021011 273 YYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPRLPS 313 (318)
Q Consensus 273 YYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H~~~~~ 313 (318)
-+.|.-+-|=||+ ++-|-.++. +| .--+|.|+|++|++
T Consensus 122 ~~~Crgh~GyPVT-hFWrh~~~~-if-FqaKG~HDHpRPe~ 159 (174)
T 1odh_A 122 LIPCRGHGGFPVT-NFWRHDGRF-IF-FQSKGEHDHPRPET 159 (174)
T ss_dssp EECCCTBTTBCCE-EEEEECSSB-EE-EEEECCCCSCCCCC
T ss_pred eEeccCcCCCcce-EEEEEcCCE-EE-EecccccCCCCCCC
Confidence 3566644455663 444433333 33 34689999999875
No 7
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=13.32 E-value=29 Score=28.30 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=0.0
Q ss_pred CCCCccccccCCCC----------------CCCCCC---Ccccccc
Q 021011 250 PPDDYSWRKYGQKP----------------IKGSPH---PRGYYKC 276 (318)
Q Consensus 250 ~~DGy~WRKYGQK~----------------Ikgs~~---pRsYYRC 276 (318)
+++...|-|-|+.. +.++-. ||+||.|
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C 77 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEE
No 8
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=10.12 E-value=90 Score=22.66 Aligned_cols=53 Identities=26% Similarity=0.457 Sum_probs=0.0
Q ss_pred CCCCccccccCCCCCCC--------------------------CCCCccccccCCCCCCccccceeecCCCCcEEEEEEe
Q 021011 250 PPDDYSWRKYGQKPIKG--------------------------SPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYE 303 (318)
Q Consensus 250 ~~DGy~WRKYGQK~Ikg--------------------------s~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~ 303 (318)
|.-.+.|.|-|+....+ .....+.|.|. |+..+-........+.|.|.
T Consensus 37 P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~------a~N~~G~~~s~~~~l~~~~~ 110 (117)
T 2v9t_A 37 PTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCV------ARNYLGEAVSHDASLEVAAA 110 (117)
T ss_dssp SCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEE------EEETTEEEECCCEEEEEC--
T ss_pred CCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEE------EEeCccceEeeeEEEEhhhh
Q ss_pred ccCCC
Q 021011 304 GEHNH 308 (318)
Q Consensus 304 GeH~H 308 (318)
-+|-|
T Consensus 111 ~~~~~ 115 (117)
T 2v9t_A 111 AHHHH 115 (117)
T ss_dssp -----
T ss_pred hhhhc
No 9
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1
Probab=6.96 E-value=1.8e+02 Score=24.26 Aligned_cols=46 Identities=30% Similarity=0.502 Sum_probs=0.0
Q ss_pred cccccCC--------CCCCCCCCCccccccCCCCCCccccceeecCCCCcEEEEEEeccCCC
Q 021011 255 SWRKYGQ--------KPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNH 308 (318)
Q Consensus 255 ~WRKYGQ--------K~Ikgs~~pRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~H 308 (318)
+|..||+ .+|.-+. -+-|||+ |.-...-...+..+++||=...|.|
T Consensus 63 ~w~E~~N~s~fvLhf~~V~~sD--sGsYRCs------An~~sg~ieSHsvtI~Vt~~~~~~~ 116 (120)
T 2aw2_A 63 SWKEEKNISFFILHFEPVLPND--NGSYRCS------ANFQSNLIESHSTTLYVTDVKHHHH 116 (120)
T ss_dssp EEEECSSCEEEEEEESSCCGGG--CEEEEEE------EEETTEEEECCCEEEEEECGGGCCC
T ss_pred cceecCCeeEEEEEEeeeeEcC--CcceEEE------eeCCCCcEEeeEEEEEEEecccccc
No 10
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.51 E-value=2.3e+02 Score=20.28 Aligned_cols=23 Identities=30% Similarity=0.947 Sum_probs=0.0
Q ss_pred CCCCCccc--cccCC----CCCCccccce
Q 021011 266 GSPHPRGY--YKCSS----MRGCPARKHV 288 (318)
Q Consensus 266 gs~~pRsY--YRCs~----~~gC~ArK~V 288 (318)
|..-|++| |||.. .+.||..+.+
T Consensus 1 ~~~~p~~~~C~kCGk~GH~~k~Cp~~~~~ 29 (55)
T 2ysa_A 1 GSSGSSGYTCFRCGKPGHYIKNCPTNGDK 29 (55)
T ss_dssp CCCSSSSCCCTTTCCTTSCGGGCSGGGCS
T ss_pred CCCCCCCCccccCCCcCcccccCCCCCCC
Done!