Query 021015
Match_columns 318
No_of_seqs 206 out of 1158
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12479 branched-chain amino 100.0 3.7E-50 7.9E-55 380.0 26.8 250 5-317 4-264 (299)
2 PRK08320 branched-chain amino 100.0 2.7E-49 5.8E-54 371.9 27.5 249 6-317 4-263 (288)
3 PRK06680 D-amino acid aminotra 100.0 4.1E-49 9E-54 370.6 28.1 249 5-317 3-261 (286)
4 PRK06606 branched-chain amino 100.0 7.3E-49 1.6E-53 372.2 27.9 250 4-317 6-272 (306)
5 PRK07544 branched-chain amino 100.0 7.2E-49 1.6E-53 369.9 26.9 249 4-317 8-269 (292)
6 PRK12400 D-amino acid aminotra 100.0 1.8E-48 4E-53 366.9 28.4 252 1-317 1-262 (290)
7 cd01558 D-AAT_like D-Alanine a 100.0 1.3E-48 2.8E-53 363.6 26.5 246 8-317 1-254 (270)
8 PRK13356 aminotransferase; Pro 100.0 3.2E-48 6.9E-53 364.5 29.0 248 4-317 6-265 (286)
9 PRK07650 4-amino-4-deoxychoris 100.0 2.7E-48 5.8E-53 364.4 26.8 246 6-317 1-256 (283)
10 TIGR01122 ilvE_I branched-chai 100.0 2.6E-48 5.7E-53 366.9 26.8 249 8-317 1-264 (298)
11 TIGR01121 D_amino_aminoT D-ami 100.0 5.1E-48 1.1E-52 361.4 27.7 247 7-317 2-255 (276)
12 PRK07849 4-amino-4-deoxychoris 100.0 5.9E-48 1.3E-52 364.0 28.1 247 3-317 5-271 (292)
13 PLN02845 Branched-chain-amino- 100.0 5E-47 1.1E-51 364.1 27.6 246 6-317 42-302 (336)
14 PRK06092 4-amino-4-deoxychoris 100.0 6.3E-47 1.4E-51 352.2 26.8 242 6-317 1-252 (268)
15 TIGR03461 pabC_Proteo aminodeo 100.0 2.1E-46 4.6E-51 347.3 26.7 240 8-317 1-250 (261)
16 PRK09266 hypothetical protein; 100.0 7.8E-46 1.7E-50 344.8 25.7 238 4-317 2-244 (266)
17 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 3.5E-45 7.5E-50 337.2 26.4 228 27-317 5-240 (256)
18 cd01557 BCAT_beta_family BCAT_ 100.0 1.5E-44 3.2E-49 338.7 25.6 237 22-317 2-255 (279)
19 cd01559 ADCL_like ADCL_like: 4 100.0 2E-44 4.4E-49 332.0 25.4 224 27-316 5-235 (249)
20 TIGR01123 ilvE_II branched-cha 100.0 2.1E-44 4.5E-49 342.7 24.4 253 8-316 1-276 (313)
21 PRK13357 branched-chain amino 100.0 4E-44 8.7E-49 346.4 26.5 250 8-314 42-314 (356)
22 PLN03117 Branched-chain-amino- 100.0 8.4E-44 1.8E-48 344.0 26.8 253 5-315 43-311 (355)
23 PLN02782 Branched-chain amino 100.0 1.6E-42 3.4E-47 339.3 26.4 253 7-317 95-366 (403)
24 PLN02259 branched-chain-amino- 100.0 8.4E-42 1.8E-46 332.7 24.6 248 7-314 81-347 (388)
25 COG0115 IlvE Branched-chain am 100.0 4.1E-41 9E-46 316.1 28.4 248 5-315 2-261 (284)
26 PLN02883 Branched-chain amino 100.0 4.1E-40 8.8E-45 320.3 26.4 253 7-315 77-344 (384)
27 PRK07546 hypothetical protein; 100.0 3.1E-37 6.7E-42 277.7 23.4 198 30-312 4-209 (209)
28 PF01063 Aminotran_4: Aminotra 100.0 2.9E-36 6.3E-41 273.1 17.1 213 46-318 1-219 (231)
29 KOG0975 Branched chain aminotr 100.0 1.2E-31 2.6E-36 253.6 19.0 254 8-315 70-338 (379)
30 PRK07101 hypothetical protein; 100.0 5.5E-30 1.2E-34 227.2 19.9 183 30-307 3-187 (187)
31 cd05569 PTS_IIB_fructose PTS_I 35.3 75 0.0016 24.8 4.5 36 269-304 19-63 (96)
32 TIGR00829 FRU PTS system, fruc 31.0 98 0.0021 23.7 4.4 34 271-304 20-62 (85)
33 TIGR00853 pts-lac PTS system, 30.3 1.3E+02 0.0028 23.5 5.0 53 264-316 16-85 (95)
34 PF13051 DUF3912: Protein of u 29.7 49 0.0011 23.8 2.2 38 223-279 31-68 (68)
35 COG1445 FrwB Phosphotransferas 29.2 1.1E+02 0.0024 25.4 4.6 35 269-303 22-65 (122)
36 TIGR01470 cysG_Nterm siroheme 27.1 3.1E+02 0.0066 24.4 7.6 69 225-304 11-79 (205)
37 PRK10474 putative PTS system f 26.6 1.1E+02 0.0023 23.6 3.9 37 269-305 4-49 (88)
38 PRK06683 hypothetical protein; 21.1 1.3E+02 0.0029 22.9 3.5 29 266-295 40-68 (82)
39 PRK13602 putative ribosomal pr 20.2 1.4E+02 0.0031 22.7 3.4 29 266-295 40-68 (82)
No 1
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=3.7e-50 Score=380.04 Aligned_cols=250 Identities=20% Similarity=0.242 Sum_probs=211.1
Q ss_pred cEEEECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 021015 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (318)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (318)
.++|+||+++ +.+++.++++||+ |||+|||||+++| ++++|++|++||.+||+.|+|+.
T Consensus 4 ~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~i~~--------------- 65 (299)
T PRK12479 4 QYIYMNGEFV-EKEKAVVSVYDHGFLYGDGVFEGIRSYGG--NVFCLKEHVKRLYESAKSILLTI--------------- 65 (299)
T ss_pred cEEEECCEEe-EHHHCccccccchhheeeeEEEEEEEECC--EecCHHHHHHHHHHHHHHhCCCC---------------
Confidence 5799999999 9999999999986 9999999999999 99999999999999999999943
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEe-eCCCCCCccCCCCCCCCcceEEEEEEecC
Q 021015 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSG-DYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (318)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g-~~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (318)
+++.+.+++.+.++++. ++..+++||+++++ .+++++..+ ....+++++.+.|+
T Consensus 66 ------p~~~~~l~~~i~~~i~~-------------~~~~~~~ir~~v~rg~g~~g~~~~------~~~~~~~~i~~~~~ 120 (299)
T PRK12479 66 ------PLTVDEMEEAVLQTLQK-------------NEYADAYIRLIVSRGKGDLGLDPR------SCVKPSVIIIAEQL 120 (299)
T ss_pred ------CCCHHHHHHHHHHHHHH-------------cCCCCeEEEEEEEecCCCCCCCCc------cCCCceEEEEEEEc
Confidence 35789999999999863 44567899999994 444444331 22356788888887
Q ss_pred CCccccccCCCceEEEecccccCcc---ccccccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEcCCC
Q 021015 161 VPFVFGVEGTGARLALVGRGRDVAE---AKYSDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKDN 234 (318)
Q Consensus 161 ~~~~~~~~~~gv~l~~~~~~r~~~~---~k~~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~~~ 234 (318)
++.....+.+|+++.++...|..+. +..|+.+++.++++ +|+++|+||+ ++|.+| +|+|++++|||++++++
T Consensus 121 ~~~~~~~~~~gv~~~~~~~~r~~~~~~~~~~K~~nyl~~vla~~ea~~~g~de~l~ld~~g-~v~E~s~sNlf~v~~~~- 198 (299)
T PRK12479 121 KLFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLNQQG-YVCEGSGDNVFVVKDGK- 198 (299)
T ss_pred ccCChhHHhCCeEEEEEeEeccCCCccCccchhhhhHHHHHHHHHHHHcCCCEEEEEcCCC-cEEECCceEEEEEECCE-
Confidence 6433334567998888777765432 34567777788776 4788999999 556678 99999999999999997
Q ss_pred CchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEEC
Q 021015 235 SEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIG 313 (318)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~ 313 (318)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|+
T Consensus 199 ------------------l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~id 260 (299)
T PRK12479 199 ------------------VLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKVD 260 (299)
T ss_pred ------------------EEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceec
Q 021015 314 HKNL 317 (318)
Q Consensus 314 ~~~~ 317 (318)
++.+
T Consensus 261 ~~~~ 264 (299)
T PRK12479 261 SREI 264 (299)
T ss_pred CEEc
Confidence 8765
No 2
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2.7e-49 Score=371.90 Aligned_cols=249 Identities=20% Similarity=0.234 Sum_probs=208.4
Q ss_pred EEEECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 021015 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (318)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~ 82 (318)
++|+||+++ +.+++.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.
T Consensus 4 ~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~~v~~g--~~~~l~~Hl~RL~~Sa~~l~i~~---------------- 64 (288)
T PRK08320 4 LIYLNGEFV-PKEEAKVSVFDHGFLYGDGVFEGIRAYNG--RVFRLKEHIDRLYDSAKAIMLEI---------------- 64 (288)
T ss_pred EEEECCEEE-EHHHCcccccchhhhhcceEEEEEEEECC--EeecHHHHHHHHHHHHHhhCCCC----------------
Confidence 799999999 9999999999986 9999999999999 89999999999999999999943
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEee-CCCCCCccCCCCCCCCcceEEEEEEecCC
Q 021015 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD-YGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (318)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~-~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (318)
+++.+.+++.+.++++. ++..+++||++|+++ ++.++..+ ....+.+++.+.|++
T Consensus 65 -----p~~~~~l~~~i~~~i~~-------------~~~~~~~iri~v~rg~g~~g~~~~------~~~~~~~~~~~~~~~ 120 (288)
T PRK08320 65 -----PLSKEEMTEIVLETLRK-------------NNLRDAYIRLVVSRGVGDLGLDPR------KCPKPTVVCIAEPIG 120 (288)
T ss_pred -----CCCHHHHHHHHHHHHHh-------------cCCCCEEEEEEEEECCCcCCCCcc------cCCCceEEEEEEEcC
Confidence 35789999999999863 445678999999954 44443321 123456777777765
Q ss_pred CccccccCCCceEEEecccccCc---cccccccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEcCCCC
Q 021015 162 PFVFGVEGTGARLALVGRGRDVA---EAKYSDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKDNS 235 (318)
Q Consensus 162 ~~~~~~~~~gv~l~~~~~~r~~~---~~k~~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~~~~ 235 (318)
+.....+.+|+++.++...|..+ ....|+.++..++++ +|+++|+||+ ++|.+| +|+||+++|||++++++
T Consensus 121 ~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~K~~nyl~~v~a~~~A~~~g~de~L~ld~~g-~v~E~s~sNlf~~~~~~-- 197 (288)
T PRK08320 121 LYPGELYEKGLKVITVSTRRNRPDALSPQVKSLNYLNNILAKIEANLAGVDEAIMLNDEG-YVAEGTGDNIFIVKNGK-- 197 (288)
T ss_pred cCChhHHhcCeEEEEEeeeccCCCCcCccchhhhhHHHHHHHHHHHHcCCCEEEEECCCC-eEEEcCcEEEEEEECCE--
Confidence 44333456799888777666532 134567777777776 5788999999 556677 99999999999999997
Q ss_pred chhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECc
Q 021015 236 EAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGH 314 (318)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~ 314 (318)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|++
T Consensus 198 -----------------l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~gv~pV~~i~~ 260 (288)
T PRK08320 198 -----------------LITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFLTGTAAEVIPVVKVDG 260 (288)
T ss_pred -----------------EECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHhCCEEEEecChhhEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999 9999998
Q ss_pred eec
Q 021015 315 KNL 317 (318)
Q Consensus 315 ~~~ 317 (318)
+.+
T Consensus 261 ~~~ 263 (288)
T PRK08320 261 RVI 263 (288)
T ss_pred EEC
Confidence 754
No 3
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=4.1e-49 Score=370.60 Aligned_cols=249 Identities=20% Similarity=0.213 Sum_probs=208.6
Q ss_pred cEEEECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 021015 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (318)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (318)
.++|+||+++ +.+++.+++.|++ |||+|||+|+++| ++++|++|++||.+||+.|+|+.
T Consensus 3 ~~~~~nG~~~-~~~~~~i~~~drg~~yGdGvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~L~i~~--------------- 64 (286)
T PRK06680 3 RIAYVNGRYV-NHREARVHIEDRGFQFADGIYEVCAVRDG--KLVDLDRHLARLFRSLGEIRIAP--------------- 64 (286)
T ss_pred cEEEECCEEE-EHHHCcccccccccceeeEEEEEEEEECC--EEechHHHHHHHHHHHHHcCCCC---------------
Confidence 4899999999 9999999999986 9999999999999 99999999999999999999943
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEee-CCCCCCccCCCCCCCCcceEEEEEEecC
Q 021015 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD-YGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (318)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~-~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (318)
+++.+.|++.|.++++. ++..+++||++++++ +++++..+ .....+++++.+.|+
T Consensus 65 ------~~~~~~l~~~i~~~~~~-------------~~~~~~~lr~~vtrG~~~~~~~~~-----~~~~~~~~~i~~~~~ 120 (286)
T PRK06680 65 ------PMTRAELVEVLRELIRR-------------NRVREGLVYLQVTRGVARRDHVFP-----AADVKPSVVVFAKSV 120 (286)
T ss_pred ------CCCHHHHHHHHHHHHHH-------------cCCCceEEEEEEEeCCCCCCCCCC-----CCCCCcEEEEEEEec
Confidence 35789999999999963 445678999999944 44554432 112356788888887
Q ss_pred CC-ccccccCCCceEEEecccccCccccccccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEE-EcCCCC
Q 021015 161 VP-FVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVV-CRKDNS 235 (318)
Q Consensus 161 ~~-~~~~~~~~gv~l~~~~~~r~~~~~k~~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v-~~~~~~ 235 (318)
++ .....+.+|+++.++...|. +....|+.+++.++++ +|+++|+||+ ++| +| +|+||+++|||++ ++++
T Consensus 121 ~~~~~~~~~~~gv~~~~~~~~~~-~~~~~Ks~nyl~~vla~~eA~~~g~dd~l~ld-~g-~v~E~~~sN~f~~~~~~~-- 195 (286)
T PRK06680 121 DFARPAAAAETGIKVITVPDNRW-KRCDIKSVGLLPNVLAKQAAKEAGAQEAWMVD-DG-FVTEGASSNAWIVTKDGK-- 195 (286)
T ss_pred cccCChhHHhCCeEEEEecCCCC-CCCCcchhccHHHHHHHHHHHHCCCCEEEEec-CC-EEEEcCcEEEEEEEECCE--
Confidence 64 22333457888877654432 2234567778888776 5889999999 566 77 9999999999999 8887
Q ss_pred chhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECc
Q 021015 236 EAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGH 314 (318)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~ 314 (318)
|+|||+++|+|+||||+.+|++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|++
T Consensus 196 -----------------l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~id~ 258 (286)
T PRK06680 196 -----------------LVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQIDG 258 (286)
T ss_pred -----------------EEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcccEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eec
Q 021015 315 KNL 317 (318)
Q Consensus 315 ~~~ 317 (318)
+.+
T Consensus 259 ~~~ 261 (286)
T PRK06680 259 KQI 261 (286)
T ss_pred EEC
Confidence 876
No 4
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=7.3e-49 Score=372.23 Aligned_cols=250 Identities=19% Similarity=0.222 Sum_probs=208.2
Q ss_pred ccEEEECCeEecCCCCCccccccCC---cceeEeeEEEEcCccc----ccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 021015 4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSC----LLFWERHLRRLASSARILYNSSPNLLFKSPTP 76 (318)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~----i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~ 76 (318)
..++|+||+++ +.+++.+++.|++ |||+|||+|+++| + +++|++|++||.+||+.|+|+.
T Consensus 6 ~~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEtir~~~g--~~~~~~~~l~~Hl~RL~~Sa~~l~i~~---------- 72 (306)
T PRK06606 6 AGYIWFNGELV-PWEDAKVHVLTHALHYGTGVFEGIRAYDT--PKGPAIFRLREHTKRLFNSAKILRMEI---------- 72 (306)
T ss_pred CCcEEECCEEE-EhHHcccChhhhhhhhcceeEEEEEEecC--CCCCeeeChHHHHHHHHHHHHHhCCCC----------
Confidence 66899999999 9999999999986 9999999999998 7 9999999999999999999943
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEee-CCCCCCccCCCCCCCCcceEEEE
Q 021015 77 SGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD-YGKLSGIENMGSDDFLGVFDVSV 155 (318)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~-~~~~~~~~~~g~~~~~~~~~~~v 155 (318)
+++.+.|++.|.++++. ++..+++||++|+++ +++++..+ ...+++++
T Consensus 73 -----------~~~~~~l~~~i~~~i~~-------------~~~~~~~ir~~v~rg~~~~g~~~~-------~~~~~~~i 121 (306)
T PRK06606 73 -----------PYSVDELMEAQREVVRK-------------NNLKSAYIRPLVFVGDEGLGVRPH-------GLPTDVAI 121 (306)
T ss_pred -----------CCCHHHHHHHHHHHHHh-------------cCCCCEEEEEEEEecCCccCcCCC-------CCCceEEE
Confidence 35789999999999963 445689999999944 44444321 12456777
Q ss_pred EEecCCCcc-ccccCCCceEEEecccccCcc---cccc-ccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEE
Q 021015 156 HFSGYVPFV-FGVEGTGARLALVGRGRDVAE---AKYS-DWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFF 227 (318)
Q Consensus 156 ~~~~~~~~~-~~~~~~gv~l~~~~~~r~~~~---~k~~-~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF 227 (318)
.+.|+++.. ...+++|+++.+....|..+. +..| +.+++.++++ +|+++|+||+ +++.+| +|+||+++|||
T Consensus 122 ~~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~G~de~l~l~~~g-~v~E~~~sNlf 200 (306)
T PRK06606 122 AAWPWGAYLGEEALEKGIRVKVSSWTRHAPNSIPTRAKASGNYLNSILAKTEARRNGYDEALLLDVEG-YVSEGSGENIF 200 (306)
T ss_pred EEeccccccCcccccCCeEEEEeeEecCCCCCcCcchhhhhccHHHHHHHHHHHHcCCCEEEEECCCC-CEEEcCceEEE
Confidence 777765422 222456999988877775432 3334 2467777776 5889999999 556677 99999999999
Q ss_pred EEEcCCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce
Q 021015 228 VVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN 307 (318)
Q Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi 307 (318)
++++++ |+|||++.|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++||
T Consensus 201 ~v~~~~-------------------l~TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi 261 (306)
T PRK06606 201 IVRDGV-------------------LYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTGTAAEV 261 (306)
T ss_pred EEECCE-------------------EECCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceE
Confidence 999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred -EEEEECceec
Q 021015 308 -VVTTIGHKNL 317 (318)
Q Consensus 308 -pV~~i~~~~~ 317 (318)
||++|+++.+
T Consensus 262 ~PV~~id~~~~ 272 (306)
T PRK06606 262 TPIREVDGRQI 272 (306)
T ss_pred EEEEEECcEEC
Confidence 9999999876
No 5
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=7.2e-49 Score=369.87 Aligned_cols=249 Identities=16% Similarity=0.164 Sum_probs=202.1
Q ss_pred ccEEEECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 021015 4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (318)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~ 80 (318)
..++|+||+++ +.+++.++++|+| |||+|||+|+++| ++++|++|++||.+||++|+|+.
T Consensus 8 ~~~~~~nG~~~-~~~~~~i~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~i~~-------------- 70 (292)
T PRK07544 8 DGFIWMDGELV-PWRDAKVHVLTHGLHYASSVFEGERAYGG--KIFKLREHSERLRRSAELLDFEI-------------- 70 (292)
T ss_pred CCeEEECCEEE-EhHHCccChhhhHhhhcceeEEeeEeeCC--cccChHHHHHHHHHHHHHhCCCC--------------
Confidence 45799999999 9999999999986 9999999999999 99999999999999999999943
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEee-CCCCCCccCCCCCCCCcceEEEEEEec
Q 021015 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD-YGKLSGIENMGSDDFLGVFDVSVHFSG 159 (318)
Q Consensus 81 ~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~-~~~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (318)
+++.+.|++.+.++++. ++..+++||++++++ ++++|..+ ...+.+++...+
T Consensus 71 -------~~~~~~l~~~i~~~i~~-------------~~~~~~~ir~~v~rg~~~~g~~~~-------~~~~~~~v~~~~ 123 (292)
T PRK07544 71 -------PYSVAEIDAAKKETLAA-------------NGLTDAYVRPVAWRGSEMMGVSAQ-------QNKIHLAIAAWE 123 (292)
T ss_pred -------CCCHHHHHHHHHHHHHh-------------cCCCCeEEEEEEEecCCCCCcCCC-------CCCcEEEEEEec
Confidence 35788999999999963 455689999999944 44444432 123445555555
Q ss_pred CCCcc-ccccCCCceEEEecccccCccccc---c-ccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEc
Q 021015 160 YVPFV-FGVEGTGARLALVGRGRDVAEAKY---S-DWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCR 231 (318)
Q Consensus 160 ~~~~~-~~~~~~gv~l~~~~~~r~~~~~k~---~-~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~ 231 (318)
++... ...+.+|+++.++...|..+.... + .-++..++++ +|+++|+||+ ++|.+| +|+||+++|+|+|++
T Consensus 124 ~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~k~~~~yl~~vla~~~A~~~G~deal~ld~~g-~V~E~~~sNlf~v~~ 202 (292)
T PRK07544 124 WPSYFDPEAKMKGIRLDIAKWRRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDYRG-YVAEATGANIFFVKD 202 (292)
T ss_pred cccccCccccCCCEEEEEeEEEcCCCCCcCHhhhhhcccHHHHHHHHHHHHcCCCeEEEECCCC-CEEEcCceEEEEEEC
Confidence 44221 123356899988887775443221 1 1135556665 5889999999 556678 999999999999999
Q ss_pred CCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEE
Q 021015 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVT 310 (318)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~ 310 (318)
++ |+||+++ ++|+||||+.||++|+++|++|+|++++++||.+|||+|+|||++|| ||+
T Consensus 203 ~~-------------------l~TP~~~-~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~ 262 (292)
T PRK07544 203 GV-------------------IHTPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVS 262 (292)
T ss_pred CE-------------------EECCCCc-ccccchhHHHHHHHHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEE
Confidence 97 9999985 59999999999999999999999999999999999999999999999 999
Q ss_pred EECceec
Q 021015 311 TIGHKNL 317 (318)
Q Consensus 311 ~i~~~~~ 317 (318)
+|+++.|
T Consensus 263 ~i~~~~~ 269 (292)
T PRK07544 263 EIGEYRF 269 (292)
T ss_pred EEeeEEe
Confidence 9998876
No 6
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.8e-48 Score=366.88 Aligned_cols=252 Identities=19% Similarity=0.182 Sum_probs=204.8
Q ss_pred CCCccEEEECCeEecCCC--CCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 021015 1 MTSTRIVFSNGVVSQASD--TPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPT 75 (318)
Q Consensus 1 m~~~~~~~~nG~~~~~~~--~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~ 75 (318)
|.-.+++|+||+++ +.+ ++.++++|++ |||+|||||+++| ++++|++|++||.+||++|+|+.
T Consensus 1 ~~~~~~~~~ng~~v-~~~~~~~~i~~~drgl~yGdgvFEtir~~~G--~~~~l~~Hl~RL~~Sa~~L~i~~--------- 68 (290)
T PRK12400 1 MAYERFVLWNDAVI-DTTKQKTYIELEERGLQFGDGVYEVIRLYKG--NFHLLDPHITRLYRSMEEIELTL--------- 68 (290)
T ss_pred CCcccEEEECCEEe-chHHcCceeccccchhhhcceEEEEEEEECC--EecccHHHHHHHHHHHHHhCCCC---------
Confidence 55567899999999 888 4559999986 9999999999999 99999999999999999999943
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCC-cceEEEEEEEee-CCCCCCccCCCCCCCCcceEE
Q 021015 76 PSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDG-EELAVTVLVSGD-YGKLSGIENMGSDDFLGVFDV 153 (318)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~-~~~~iri~v~g~-~~~~~~~~~~g~~~~~~~~~~ 153 (318)
+++.+.+++.+.++++. ++. .+++||++++++ +++++..+ ....+++
T Consensus 69 ------------p~~~~~l~~~l~~~~~~-------------~~~~~~~~iri~v~rG~~~~~~~~~------~~~~~~~ 117 (290)
T PRK12400 69 ------------PFSKAELITLLYKLIEN-------------NNFHEDGTIYLQVSRGVQARTHTFS------YDVPPTI 117 (290)
T ss_pred ------------CCCHHHHHHHHHHHHHh-------------cCCCCCEEEEEEEEeCCCCCCCCCC------CCCCcEE
Confidence 35788999999999863 332 578999999944 44554442 1134566
Q ss_pred EEEEecCCCccccccCCCceEEEecccccCccccccccccchhHHH--hhCCCCCCEEEEeCCCCeEEecCcceEEEEEc
Q 021015 154 SVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCR 231 (318)
Q Consensus 154 ~v~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~k~~~~~~~~~~l~--~a~~~G~de~lL~~~g~~v~Eg~~sNiF~v~~ 231 (318)
++.+.+.++. ..+..+|+++......+. ..+..|+.+++.++++ +|+++|+||+++.++| +|+||+++|||++++
T Consensus 118 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~~-~~~~~Kt~nyl~~vla~~ea~~~g~deaL~l~~g-~v~E~t~sNif~v~~ 194 (290)
T PRK12400 118 YAYITKKERP-ALWIEYGVRAISEPDTRW-LRCDIKSLNLLPNILAATKAERKGCKEALFVRNG-TVTEGSHSNFFLIKN 194 (290)
T ss_pred EEEEecccCc-hhHHhcCcEEEECCCCCc-cCCCCcccccHHHHHHHHHHHHcCCCEEEEEcCC-EEEEcCceEEEEEEC
Confidence 6666554322 223456887765433322 1244567788888887 4778999999554577 999999999999999
Q ss_pred CCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEE
Q 021015 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVT 310 (318)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~ 310 (318)
++ |+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||+
T Consensus 195 ~~-------------------l~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~ 255 (290)
T PRK12400 195 GT-------------------LYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMT 255 (290)
T ss_pred CE-------------------EEeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEE
Confidence 98 9999999999999999999999999999999999999999999999999999999 999
Q ss_pred EECceec
Q 021015 311 TIGHKNL 317 (318)
Q Consensus 311 ~i~~~~~ 317 (318)
+|+++.+
T Consensus 256 ~i~~~~~ 262 (290)
T PRK12400 256 HLDGTAI 262 (290)
T ss_pred EECCEEC
Confidence 9998865
No 7
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=1.3e-48 Score=363.62 Aligned_cols=246 Identities=26% Similarity=0.288 Sum_probs=204.4
Q ss_pred EECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 021015 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRT 84 (318)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~ 84 (318)
|+||+++ +.+++.+++.|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.
T Consensus 1 ~~nG~~~-~~~~~~i~~~d~g~~~G~gvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~------------------ 59 (270)
T cd01558 1 YLNGEYV-PREEAKVSVFDRGFLFGDGVYEVIRVYNG--KPFALDEHLDRLYRSAKELRIDI------------------ 59 (270)
T ss_pred CcCCeEe-EHHHCccccccchhcccceEEEEEEEECC--EEecHHHHHHHHHHHHHHhCCCC------------------
Confidence 6899999 9999999999985 9999999999999 99999999999999999999943
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEE-eeCCCCCCccCCCCCCCCcceEEEEEEecCCCc
Q 021015 85 PSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVS-GDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPF 163 (318)
Q Consensus 85 ~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~-g~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 163 (318)
+++.+.+++.++++++. ++..++.+|+.++ |.+++++..+ ....+.+++.+.|+++.
T Consensus 60 ---~~~~~~l~~~i~~~~~~-------------~~~~~~~~~~~~t~g~~~~~~~~~------~~~~~~~~i~~~~~~~~ 117 (270)
T cd01558 60 ---PYTREELKELIRELVAK-------------NEGGEGDVYIQVTRGVGPRGHDFP------KCVKPTVVIITQPLPLP 117 (270)
T ss_pred ---CCCHHHHHHHHHHHHHH-------------cCCCCceEEEEEEeCCCccCCCCC------CCCCCEEEEEEEecCCC
Confidence 35788999999998863 3445678888888 4444544332 12356777777777643
Q ss_pred cccccCCCceEEEecccccCccccccccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEcCCCCchhhh
Q 021015 164 VFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKDNSEAEDK 240 (318)
Q Consensus 164 ~~~~~~~gv~l~~~~~~r~~~~~k~~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~~~~~~~~~ 240 (318)
....+++|+++.++...|.. ....|+.++..++++ +|++.|+||+ ++|.+| +|+||+++|||++++++
T Consensus 118 ~~~~~~~gv~~~~~~~~~~~-~~~~K~~ny~~~~~a~~~a~~~g~de~l~ld~~g-~v~E~~~sNif~~~~~~------- 188 (270)
T cd01558 118 PAELLEKGVRVITVPDIRWL-RCDIKSLNLLNNVLAKQEAKEAGADEAILLDADG-LVTEGSSSNVFIVKNGV------- 188 (270)
T ss_pred ChhhhhcCeEEEEecccccC-CCCchhhccHHHHHHHHHHHHcCCCEEEEEcCCC-EEEEcCcEEEEEEECCE-------
Confidence 33334678988887766542 234566777777766 5889999999 556677 99999999999999997
Q ss_pred hhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECceec
Q 021015 241 FLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHKNL 317 (318)
Q Consensus 241 ~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~~~ 317 (318)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|+++.+
T Consensus 189 ------------l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV~~i~~~~~ 254 (270)
T cd01558 189 ------------LVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEIDGRPI 254 (270)
T ss_pred ------------EECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEEEEECCeEC
Confidence 9999999999999999999999999999999999999999999999999999999 9999998764
No 8
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=3.2e-48 Score=364.51 Aligned_cols=248 Identities=18% Similarity=0.140 Sum_probs=200.5
Q ss_pred ccEEEECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 021015 4 TRIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (318)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~ 80 (318)
.+++|+||+++ +.+.+.+++.|++ |||+|||+|+++| ++++|++|++||.+||+.|+|+.
T Consensus 6 ~~~~~~nG~~~-~~~~~~i~~~drg~~yGdgvFEtir~~~g--~~~~l~~Hl~RL~~Sa~~L~i~~-------------- 68 (286)
T PRK13356 6 NTWTFFDGEWH-EGNVPIMGPADHAAWLGSTVFDGARAFEG--VTPDLDLHCARVNRSAEALGLKP-------------- 68 (286)
T ss_pred CceEEECCEEc-chhhcccccccchhhhcceeEEEEEEecC--CCCCHHHHHHHHHHHHHHhCCCC--------------
Confidence 56899999999 8899999999986 9999999999999 99999999999999999999943
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCC-CCCCccCCCCCCCCcceEEEEEEec
Q 021015 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHFSG 159 (318)
Q Consensus 81 ~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~-~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (318)
+++.+.|++.++++++.+ +...+++||++|+++.+ .++..+ . ...+.+.+.+.+
T Consensus 69 -------~~~~~~l~~~i~~~i~~~------------~~~~~~~ir~~v~rg~g~~~~~~~----~--~~~~~~~~~~~~ 123 (286)
T PRK13356 69 -------TVSAEEIEALAREGLKRF------------DPDTALYIRPMYWAEDGFASGVAP----D--PESTRFALCLEE 123 (286)
T ss_pred -------CCCHHHHHHHHHHHHHHc------------CCCCcEEEEEEEEeccCcccCcCC----C--cCCceEEEEEEc
Confidence 247899999999999632 12246899999995432 222111 1 122334444444
Q ss_pred CCCccccccCCCceEEEecccccCcccc---cc-ccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEcC
Q 021015 160 YVPFVFGVEGTGARLALVGRGRDVAEAK---YS-DWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRK 232 (318)
Q Consensus 160 ~~~~~~~~~~~gv~l~~~~~~r~~~~~k---~~-~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~ 232 (318)
.+... .+|+++.++.+.|..+... .| ..+++.++++ +|+++|+||+ ++|.+| +|+||+++|||+|+++
T Consensus 124 ~~~~~----~~gv~l~~~~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~g~deal~ld~~G-~v~E~~~sNlf~v~~~ 198 (286)
T PRK13356 124 APMPE----PTGFSLTLSPFRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLG-NVAETATSNVFMVKDG 198 (286)
T ss_pred cCCCC----CCcEEEEEeeeecCCCCCCCccceeccchHHHHHHHHHHHHcCCCEEEEECCCC-CEEEcCceEEEEEECC
Confidence 43211 2589998888777544221 22 3356666666 5889999999 556678 9999999999999999
Q ss_pred CCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEE
Q 021015 233 DNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTT 311 (318)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~ 311 (318)
+ |+||++++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++
T Consensus 199 ~-------------------l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~ 259 (286)
T PRK13356 199 V-------------------VFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTR 259 (286)
T ss_pred E-------------------EEcCCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEE
Confidence 7 9999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ECceec
Q 021015 312 IGHKNL 317 (318)
Q Consensus 312 i~~~~~ 317 (318)
|+++.+
T Consensus 260 id~~~~ 265 (286)
T PRK13356 260 FDDRSL 265 (286)
T ss_pred ECCEEe
Confidence 999875
No 9
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=2.7e-48 Score=364.38 Aligned_cols=246 Identities=22% Similarity=0.242 Sum_probs=199.9
Q ss_pred EEEECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 021015 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (318)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~ 82 (318)
++|+||+++ +.+++.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.
T Consensus 1 ~~~~nG~~~-~~~~~~v~~~drg~~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~---------------- 61 (283)
T PRK07650 1 LIYVNGQYV-EEEEARISPFDHGYLYGLGVFETFRIYNG--HPFLLDDHYDRLNDALDTLQIEW---------------- 61 (283)
T ss_pred CEEECCEEe-EHHHCeecccccccccccEEEEEEEEECC--EEEcHHHHHHHHHHHHHHhCCCC----------------
Confidence 489999999 9999999999986 9999999999999 89999999999999999999943
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEee-CCCCCCccCCCCCCCCcceEEEEEEecCC
Q 021015 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD-YGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (318)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~-~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (318)
+++.+.+++.+.++++. ++.++++||++|+++ ++.++..+ ....++++++..|++
T Consensus 62 -----~~~~~~l~~~l~~~~~~-------------~~~~~~~iRl~v~rg~~~~~~~~~------~~~~~~~~i~~~~~~ 117 (283)
T PRK07650 62 -----TMTKDEVLLILKNLLEK-------------NGLENAYVRFNVSAGIGEIGLQTE------MYEEPTVIVYMKPLA 117 (283)
T ss_pred -----CCCHHHHHHHHHHHHHh-------------cCCCcEEEEEEEEeCCCCCCCCCC------CCCCCEEEEEEEcCC
Confidence 35788999999999853 345689999999954 33343321 224577888888875
Q ss_pred CccccccCCCceEEEeccccc--CccccccccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEcCCCCc
Q 021015 162 PFVFGVEGTGARLALVGRGRD--VAEAKYSDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKDNSE 236 (318)
Q Consensus 162 ~~~~~~~~~gv~l~~~~~~r~--~~~~k~~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~~~~~ 236 (318)
+........++.+. ..|. .+....|+.++..++++ +|.++|+||+ ++|.+| +|+||+++|||++++|+
T Consensus 118 ~~~~~~~~~~~~~~---~~~~~~~~~~~~Kt~~y~~~v~a~~~a~~~g~de~llln~~G-~v~E~s~sNif~v~~g~--- 190 (283)
T PRK07650 118 PPGLPAEKEGVVLK---QRRNTPEGAFRLKSHHYLNNILGKREIGNDPNKEGIFLTEEG-YVAEGIVSNLFWVKGDI--- 190 (283)
T ss_pred CCChhhcCeEEEEE---EEecCCCCCcchhHHhHHHHHHHHHHHHHcCCCeEEEECCCC-eEEEcCceEEEEEECCE---
Confidence 43222222344332 2222 22344455566666665 4778999999 556677 99999999999999998
Q ss_pred hhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECce
Q 021015 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHK 315 (318)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~ 315 (318)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||..|||+|+|||++|+ ||++|+++
T Consensus 191 ----------------l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i~~~ 254 (283)
T PRK07650 191 ----------------VYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRIEER 254 (283)
T ss_pred ----------------EEcCCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred ec
Q 021015 316 NL 317 (318)
Q Consensus 316 ~~ 317 (318)
.+
T Consensus 255 ~~ 256 (283)
T PRK07650 255 DF 256 (283)
T ss_pred Ee
Confidence 76
No 10
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=2.6e-48 Score=366.91 Aligned_cols=249 Identities=19% Similarity=0.198 Sum_probs=207.4
Q ss_pred EECCeEecCCCCCccccccCC---cceeEeeEEEEcC--cccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 021015 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNN--GSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (318)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g--~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~ 82 (318)
|+||+++ +.+++.++++|++ |||+|||||+++| +.++++|++|++||.+||++|+|+.
T Consensus 1 ~~ng~~v-~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~~~~~l~~Hl~RL~~Sa~~l~i~~---------------- 63 (298)
T TIGR01122 1 WMDGEFV-DWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEI---------------- 63 (298)
T ss_pred CcCCEEE-EhhhcccChhhhhhhccceEEEEEEEEcCCCcceeeChHHHHHHHHHHHHHhCCCC----------------
Confidence 6899999 9999999999986 9999999999997 2259999999999999999999943
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEee-CCCCCCccCCCCCCCCcceEEEEEEecCC
Q 021015 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD-YGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (318)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~-~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (318)
+++.+.|++.|.++++. ++..+++||++|+++ +++++..+ ....+++++.+.|++
T Consensus 64 -----~~~~~~l~~~i~~~i~~-------------~~~~~~~ir~~v~rg~~~~g~~~~------~~~~~~~~v~~~~~~ 119 (298)
T TIGR01122 64 -----PYSKEELMEATRETLRK-------------NNLRSAYIRPLVFRGDGDLGLNPR------AGYKPDVIIAAWPWG 119 (298)
T ss_pred -----CCCHHHHHHHHHHHHHh-------------cCCCCEEEEEEEEEccCCCCcCCC------CCCCceEEEEEeccc
Confidence 35789999999999963 445679999999944 44444432 123567888888875
Q ss_pred Cccc-cccCCCceEEEecccccCcc---ccccccc-cchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEcCC
Q 021015 162 PFVF-GVEGTGARLALVGRGRDVAE---AKYSDWV-RLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKD 233 (318)
Q Consensus 162 ~~~~-~~~~~gv~l~~~~~~r~~~~---~k~~~~~-~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~~ 233 (318)
+... ..+.+|+++.+.+..|..+. +..|+.+ ++.++++ +|+++|+||+ +++.+| +|+||+++|||+|++++
T Consensus 120 ~~~~~~~~~~g~~l~~~~~~r~~~~~~~~~~K~~~~yl~~v~a~~~a~~~g~de~l~ld~~g-~v~E~s~sNlf~v~~~~ 198 (298)
T TIGR01122 120 AYLGEEALEKGIDAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDVEG-YVAEGSGENIFIVKDGV 198 (298)
T ss_pred cccCcccccCCeEEEEEEEEcCCCCCcCccchhhhhhHHHHHHHHHHHHcCCCEEEEECCCC-CEEECCceEEEEEECCE
Confidence 4322 12356999998887775432 4556665 7777776 5889999999 556678 99999999999999997
Q ss_pred CCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEE
Q 021015 234 NSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTI 312 (318)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i 312 (318)
|+|||+++++|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|
T Consensus 199 -------------------l~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~i 259 (298)
T TIGR01122 199 -------------------LFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREV 259 (298)
T ss_pred -------------------EECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999 99999
Q ss_pred Cceec
Q 021015 313 GHKNL 317 (318)
Q Consensus 313 ~~~~~ 317 (318)
+++.+
T Consensus 260 d~~~~ 264 (298)
T TIGR01122 260 DGRKI 264 (298)
T ss_pred CCEEC
Confidence 98875
No 11
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=5.1e-48 Score=361.39 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=203.7
Q ss_pred EEECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 021015 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIR 83 (318)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~ 83 (318)
+|+||+++ +.+++.+++.|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.
T Consensus 2 ~~~nG~~~-~~~~~~i~~~drgl~yGdgvFEtir~~~g--~~~~l~~H~~RL~~Sa~~l~i~~----------------- 61 (276)
T TIGR01121 2 VLWNGQLV-EREEAKIDIEDRGYQFGDGVYEVIRVYNG--KLFTVNEHIDRLYASAAKIRIDI----------------- 61 (276)
T ss_pred EEECCEEe-EHHHCeecccccccccccEEEEEEEEECC--EEeChHHHHHHHHHHHHHhCCCC-----------------
Confidence 79999999 9999999999986 9999999999999 99999999999999999999943
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEee-CCCCCCccCCCCCCCCcceEEEEEEecCCC
Q 021015 84 TPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD-YGKLSGIENMGSDDFLGVFDVSVHFSGYVP 162 (318)
Q Consensus 84 ~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~-~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 162 (318)
+++.+.+++.|+++++. ++..+++||+.++++ +++++..+ .....+.+++.+.|+++
T Consensus 62 ----~~~~~~l~~~i~~~~~~-------------~~~~~~~irl~~~rg~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 119 (276)
T TIGR01121 62 ----PYTKEELHQLLHELVEK-------------NNLNTGHVYFQVTRGVAPRNHQFP-----AGTVKPVITAYTKEVPR 119 (276)
T ss_pred ----CCCHHHHHHHHHHHHHh-------------cCCCceEEEEEEEcCCCCcCCCCC-----CCCCCcEEEEEEecccC
Confidence 35789999999999963 455678999999943 34444432 11124566676666653
Q ss_pred ccccccCCCceEEEecccccCccccccccccchhHHH--hhCCCCCCEEEEeCCCCeEEecCcceEEEEEcCCCCchhhh
Q 021015 163 FVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDK 240 (318)
Q Consensus 163 ~~~~~~~~gv~l~~~~~~r~~~~~k~~~~~~~~~~l~--~a~~~G~de~lL~~~g~~v~Eg~~sNiF~v~~~~~~~~~~~ 240 (318)
.. ..+.+|+++.++...|.. ....|+.++..++++ +|++.|+||+++.++| +|+||+++|||++++++
T Consensus 120 ~~-~~~~~gv~~~~~~~~~~~-~~~~K~~nyl~~vla~~eA~~~g~de~l~~~~g-~v~E~~~sNif~v~~~~------- 189 (276)
T TIGR01121 120 PE-ENLEKGVKAITVEDIRWL-RCDIKSLNLLGNVLAKQEAHEKGAYEAILHRGG-TVTEGSSSNVYGIKDGV------- 189 (276)
T ss_pred Ch-hHHhcCeEEEEecCCCcc-CCCcchhhhHHHHHHHHHHHHcCCCEEEEecCC-eEEecCceeEEEEECCE-------
Confidence 22 224578887665444322 233456677788877 5889999999665677 99999999999999987
Q ss_pred hhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECceec
Q 021015 241 FLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHKNL 317 (318)
Q Consensus 241 ~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~~~ 317 (318)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|+++.+
T Consensus 190 ------------~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~id~~~~ 255 (276)
T TIGR01121 190 ------------LYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEIDGQQI 255 (276)
T ss_pred ------------EEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEEECCEEC
Confidence 9999999999999999999999999999999999999999999999999999999 9999998865
No 12
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=5.9e-48 Score=363.97 Aligned_cols=247 Identities=20% Similarity=0.212 Sum_probs=204.6
Q ss_pred CccEEEECC-----eEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 021015 3 STRIVFSNG-----VVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSP 74 (318)
Q Consensus 3 ~~~~~~~nG-----~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~ 74 (318)
-..++|+|| +++ +.+++.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 5 ~~~~~~~ng~~~~~~~~-~~~~a~i~~~drg~~~GdgvFEt~rv~~g--~i~~l~~Hl~RL~~Sa~~l~i~~~------- 74 (292)
T PRK07849 5 PPVVVTLDPYGGSERVH-DPSAPLLHADDLAAVRGDGVFETLLVRDG--RPCNLEAHLERLARSAALLDLPEP------- 74 (292)
T ss_pred ceEEEEECCCCccceEe-chHHCCccchhcchhccceEEEEEEEECC--EECCHHHHHHHHHHHHHhcCCCCC-------
Confidence 366899999 999 9999999999996 9999999999999 899999999999999999999422
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCCCCCCccCCCCCCCCcceEEE
Q 021015 75 TPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVS 154 (318)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~~~~~~~~~g~~~~~~~~~~~ 154 (318)
+.+.+++.|.++++.+. .+..+++||++++++.+. . ..+.++
T Consensus 75 ---------------~~~~l~~~i~~~v~~~~-----------~~~~~~~iRl~v~~g~~~---------~---~~~~~~ 116 (292)
T PRK07849 75 ---------------DLDRWRRAVELAIEEWR-----------APEDEAALRLVYSRGRES---------G---GAPTAW 116 (292)
T ss_pred ---------------CHHHHHHHHHHHHHHhc-----------CCCCCeEEEEEEeCCCCC---------C---CCCeEE
Confidence 67889999999986320 034688999999954321 0 145677
Q ss_pred EEEecCCCccccccCCCceEEEeccccc------Cc--cccccccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCc
Q 021015 155 VHFSGYVPFVFGVEGTGARLALVGRGRD------VA--EAKYSDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSI 223 (318)
Q Consensus 155 v~~~~~~~~~~~~~~~gv~l~~~~~~r~------~~--~~k~~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~ 223 (318)
+.+.|+++.....+.+|+++.+++..+. .+ .+..|+.++..+.++ +|+++|+||+ ++|.+| +|+||++
T Consensus 117 i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~~~~~~Kt~ny~~~i~a~~~A~~~g~dd~L~ld~~G-~v~E~s~ 195 (292)
T PRK07849 117 VTVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAKTLSYAVNMAALRYAARRGADDVIFTSTDG-YVLEGPT 195 (292)
T ss_pred EEEeecCccchhhccCCeEEEEEeccccCcccccCcccccccchhhhHHHHHHHHHHHHcCCCEEEEEcCCC-cEEECCc
Confidence 7888876443334567899888754332 12 233556666666554 5889999999 556677 9999999
Q ss_pred ceEEEEEcCCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEecc
Q 021015 224 TNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSV 303 (318)
Q Consensus 224 sNiF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns 303 (318)
+|||++++++ |+||++++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||
T Consensus 196 ~Nif~~~~g~-------------------l~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~~eL~~Adevfltns 256 (292)
T PRK07849 196 STVVIATDDR-------------------LLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSS 256 (292)
T ss_pred eEEEEEECCE-------------------EECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCHHHHhhCCEEEEecC
Confidence 9999999997 999999999999999999999999999999999999999999999999999
Q ss_pred ccce-EEEEECceec
Q 021015 304 LLFN-VVTTIGHKNL 317 (318)
Q Consensus 304 ~~gi-pV~~i~~~~~ 317 (318)
++|+ ||++|+++.+
T Consensus 257 ~~gi~pV~~id~~~~ 271 (292)
T PRK07849 257 VRLAARVHTLDGRPL 271 (292)
T ss_pred cceEEEEEEECCEEC
Confidence 9999 9999999876
No 13
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=5e-47 Score=364.06 Aligned_cols=246 Identities=12% Similarity=0.052 Sum_probs=202.2
Q ss_pred EEEECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 021015 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (318)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~ 82 (318)
.+|+||+++ +.+++.+++.|+| |||+|||||+++| ++++|++|++||.+||+.|+|+.
T Consensus 42 ~~~~nG~~v-~~~~a~i~~~Drgl~~GdGvFETirv~~G--~~~~le~Hl~RL~~Sa~~L~i~~---------------- 102 (336)
T PLN02845 42 SSVVGGITT-DPAAMVIPLDDHMVHRGHGVFDTATIRDG--HLYELDAHLDRFLRSAAKAKIPL---------------- 102 (336)
T ss_pred eEEECCEEc-cHHHCcccccccceeecceEEEEEEEECC--EEcCHHHHHHHHHHHHHhhCCCC----------------
Confidence 589999999 9999999999996 9999999999999 89999999999999999999943
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeC-CCCCCccCCCCCCCCcceEEEEEEecCC
Q 021015 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDY-GKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (318)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~-~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (318)
+++.+.|++.|.++++. ++..+++||++|+++. +.++.. .....+++++.+.|.+
T Consensus 103 -----p~~~~~l~~~i~~~i~~-------------~~~~~~~irl~vtrG~g~~~~~~------~~~~~~~~~i~~~~~~ 158 (336)
T PLN02845 103 -----PFDRATLRRILLQTVAA-------------SGCRNGSLRYWLSAGPGGFSLSP------SGCSEPAFYAVVIEDT 158 (336)
T ss_pred -----CCCHHHHHHHHHHHHHh-------------cCCCcEEEEEEEEeCCCCCCCCC------CCCCCCEEEEEEcccc
Confidence 35789999999999963 4456889999999543 222222 1123567777766654
Q ss_pred CccccccCCCceEEEecccccCc-cccccccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEE-cCCCCc
Q 021015 162 PFVFGVEGTGARLALVGRGRDVA-EAKYSDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVC-RKDNSE 236 (318)
Q Consensus 162 ~~~~~~~~~gv~l~~~~~~r~~~-~~k~~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~-~~~~~~ 236 (318)
.... ..+|+++.+++..+..+ ....|+.++..++++ +|+++|+||+ +||.+| +|+||+++|||+++ +++
T Consensus 159 ~~~~--~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~vla~~eA~~~G~deaLlln~~G-~V~Egt~sNiF~v~~~~~--- 232 (336)
T PLN02845 159 YAQD--RPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIWLDEEG-FVAEGPNMNVAFLTNDGE--- 232 (336)
T ss_pred cccc--ccCCeEEEEeeeeecCCccccchhhhhHHHHHHHHHHHHcCCCEEEEECCCC-cEEEcCcceEEEEEECCE---
Confidence 2211 24688888876655433 345567777777776 4889999999 555577 99999999999885 776
Q ss_pred hhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhC---C--CcEEEEecCHhhHhcccEEEEeccccce-EEE
Q 021015 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSK---G--IPIRELASSWSQHELWKEAFITSVLLFN-VVT 310 (318)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~---g--i~v~E~~i~~~dL~~adE~Fltns~~gi-pV~ 310 (318)
|+|||++ ++|+||||+.||++|+++ | ++|+|+.++++||.+|||+|+|||++|| ||+
T Consensus 233 ----------------l~TP~l~-~iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~ 295 (336)
T PLN02845 233 ----------------LVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIV 295 (336)
T ss_pred ----------------EEeCCCC-CcCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCEEEEecCcccEEEEE
Confidence 9999987 599999999999999986 8 9999999999999999999999999999 999
Q ss_pred EECceec
Q 021015 311 TIGHKNL 317 (318)
Q Consensus 311 ~i~~~~~ 317 (318)
+||++.+
T Consensus 296 ~id~~~~ 302 (336)
T PLN02845 296 SWDGQPI 302 (336)
T ss_pred EECCEEC
Confidence 9999876
No 14
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=6.3e-47 Score=352.24 Aligned_cols=242 Identities=24% Similarity=0.270 Sum_probs=196.3
Q ss_pred EEEECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 021015 6 IVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPI 82 (318)
Q Consensus 6 ~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~ 82 (318)
++|+||++. +.++++|++ |||+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~~~nG~~~-----~~i~~~d~g~~~GdgvFEtir~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~~--------------- 58 (268)
T PRK06092 1 MFWINGQPQ-----ESLSVSDRSTQYGDGCFTTARVRDG--QVSLLSRHLQRLQDACERLAIPLD--------------- 58 (268)
T ss_pred CEEECCcCc-----CccCccccccccccceeeEEEEECC--eeccHHHHHHHHHHHHHhcCCCCC---------------
Confidence 479999964 678898886 9999999999999 899999999999999999999321
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEE-eeCCCCCCccCCCCCCCCcceEEEEEEecCC
Q 021015 83 RTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVS-GDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (318)
Q Consensus 83 ~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~-g~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (318)
+.+.+.+.+.+++. +..+++||++++ |.+++++..+ ....+.+++.+.|++
T Consensus 59 -------~~~~~~~~l~~~~~---------------~~~~~~iri~v~~g~~~~~~~~~------~~~~~~~~i~~~~~~ 110 (268)
T PRK06092 59 -------DWAQLEQEMKQLAA---------------ELENGVLKVIISRGSGGRGYSPA------GCAAPTRILSVSPYP 110 (268)
T ss_pred -------CHHHHHHHHHHHHh---------------hCCCeEEEEEEEccCCCCCCCCC------CCCCCeEEEEeccCC
Confidence 35667776766652 234789999999 4444444432 123567778888876
Q ss_pred CccccccCCCceEEEeccccc--CccccccccccchhHHH--hhCCCCCCEEE-EeCCCCeEEecCcceEEEEEcCCCCc
Q 021015 162 PFVFGVEGTGARLALVGRGRD--VAEAKYSDWVRLRKPLE--KLRPPSVTELL-LSNDGDQLLEGSITNFFVVCRKDNSE 236 (318)
Q Consensus 162 ~~~~~~~~~gv~l~~~~~~r~--~~~~k~~~~~~~~~~l~--~a~~~G~de~l-L~~~g~~v~Eg~~sNiF~v~~~~~~~ 236 (318)
+.....+.+|+++.++...+. +.....|+.++..++++ +|+++|+||++ ++.+| +|+||+++|||++++++
T Consensus 111 ~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~A~~~g~de~l~l~~~g-~v~E~s~sNif~v~~~~--- 186 (268)
T PRK06092 111 AHYSRWREQGITLALCPTRLGRNPLLAGIKHLNRLEQVLIRAELEQTEADEALVLDSEG-WVIECCAANLFWRKGGV--- 186 (268)
T ss_pred ccChhHhhCCEEEEEeccccCCCCCccCcchhhhHHHHHHHHHHHhcCCCEEEEECCCC-CEEEccceEEEEEECCE---
Confidence 544344467999888765442 22344566677677776 57889999995 55577 99999999999999997
Q ss_pred hhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECce
Q 021015 237 AEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHK 315 (318)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~ 315 (318)
|+|||++.|+||||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|+++
T Consensus 187 ----------------~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~ 250 (268)
T PRK06092 187 ----------------VYTPDLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGET 250 (268)
T ss_pred ----------------EECCCccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCE
Confidence 9999999899999999999999999999999999999999999999999999999 99999998
Q ss_pred ec
Q 021015 316 NL 317 (318)
Q Consensus 316 ~~ 317 (318)
.+
T Consensus 251 ~~ 252 (268)
T PRK06092 251 SY 252 (268)
T ss_pred Ec
Confidence 76
No 15
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=2.1e-46 Score=347.31 Aligned_cols=240 Identities=23% Similarity=0.239 Sum_probs=195.7
Q ss_pred EECCeEecCCCCCccccccCC---cceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 021015 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRT 84 (318)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~ 84 (318)
|+||+. ++.+++.|++ |+|+|||||+++| ++++|++|++||.+||+.|+|+.|
T Consensus 1 ~~nG~~-----~~~i~~~d~g~~~G~gvFEt~r~~~G--~~~~l~~Hl~RL~~Sa~~l~~~~~----------------- 56 (261)
T TIGR03461 1 WVNGVL-----QTQISVSDRGLQYGDGCFTTAKVRNG--KIELLDLHLERLQDAAARLGIPLP----------------- 56 (261)
T ss_pred CcCCcc-----cCccCcccccccccceeEEEEEEECC--EeccHHHHHHHHHHHHHhhCCCCC-----------------
Confidence 789996 3678888886 9999999999999 899999999999999999999422
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEe-eCCCCCCccCCCCCCCCcceEEEEEEecCCCc
Q 021015 85 PSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSG-DYGKLSGIENMGSDDFLGVFDVSVHFSGYVPF 163 (318)
Q Consensus 85 ~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g-~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 163 (318)
+.+.+++.+.++++. + .+++||++|++ .+++++..+ ....+.+++.+.|+++.
T Consensus 57 -----~~~~l~~~~~~~~~~-------------~--~~~~ir~~v~~g~~~~~~~~~------~~~~~~~~i~~~~~~~~ 110 (261)
T TIGR03461 57 -----DWDALREEMAQLAAG-------------Y--SLGVLKVIISRGSGGRGYSPP------GCSDPTRIISVSPYPAH 110 (261)
T ss_pred -----CHHHHHHHHHHHHHh-------------C--CCeEEEEEEecCCCCCCCCCC------CCCCCcEEEEeccCccc
Confidence 588899999988852 2 36899999994 344443332 12345677777777654
Q ss_pred cccccCCCceEEEeccccc--CccccccccccchhHHH--hhCCCCCCEEE-EeCCCCeEEecCcceEEEEEcCCCCchh
Q 021015 164 VFGVEGTGARLALVGRGRD--VAEAKYSDWVRLRKPLE--KLRPPSVTELL-LSNDGDQLLEGSITNFFVVCRKDNSEAE 238 (318)
Q Consensus 164 ~~~~~~~gv~l~~~~~~r~--~~~~k~~~~~~~~~~l~--~a~~~G~de~l-L~~~g~~v~Eg~~sNiF~v~~~~~~~~~ 238 (318)
....+++|+++.+....+. +.....|+.++..++++ +|+++|+||++ ++.+| +|+|++++|||++++++
T Consensus 111 ~~~~~~~g~~~~~~~~~~~~~~~~~~~Kt~~y~~~~~a~~~A~~~g~de~llln~~g-~v~E~s~sNif~~~~~~----- 184 (261)
T TIGR03461 111 YSAWQQQGIRLGVSPVRLGRNPLLAGIKHLNRLEQVLIKAELENSEADEALVLDTDG-NVVECTAANIFWRKGNQ----- 184 (261)
T ss_pred ChhHhcCCEEEEEeccccCCCCCCcCccccccHHHHHHHHHhhhcCCCEEEEECCCC-CEEEeccEEEEEEECCE-----
Confidence 4334457888888765442 23344556666666665 58889999995 55577 99999999999999997
Q ss_pred hhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECceec
Q 021015 239 DKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHKNL 317 (318)
Q Consensus 239 ~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~~~ 317 (318)
|+||++++|+|+||||+.||++|++.|++|+|+.++++||.+|||+|+|||++|+ ||++|+++.+
T Consensus 185 --------------l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~~id~~~~ 250 (261)
T TIGR03461 185 --------------VFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAIGETSY 250 (261)
T ss_pred --------------EECCCccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEeCCccceEEEEEECCEEe
Confidence 9999999999999999999999999999999999999999999999999999999 9999999876
No 16
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=7.8e-46 Score=344.84 Aligned_cols=238 Identities=17% Similarity=0.141 Sum_probs=194.6
Q ss_pred ccEEEECCeEecCCCCCccccccCCcceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q 021015 4 TRIVFSNGVVSQASDTPSVSTFLQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIR 83 (318)
Q Consensus 4 ~~~~~~nG~~~~~~~~~~is~~~~~G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~ 83 (318)
++++|+||+++ +.+++.+ -.++|||+|||||+++| ++++|++|++||.+||+.|++ .
T Consensus 2 ~~~~~~nG~~~-~~~~a~~--~~~~GdgvFETir~~~g--~~~~l~~Hl~RL~~sa~~l~~-~----------------- 58 (266)
T PRK09266 2 MPLIELNGRPA-TAEDLAA--LALANYGHFTSMQVRDG--RVRGLDLHLQRLRRASRELFG-A----------------- 58 (266)
T ss_pred ccEEEECCEEC-CHHHhhh--HhhccceEEEEEEEECC--EEcCHHHHHHHHHHHHHHHhC-C-----------------
Confidence 57899999999 8888774 33568999999999999 999999999999999999965 1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEee-CCCCCCccCCCCCCCCcceEEEEEEecCCC
Q 021015 84 TPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGD-YGKLSGIENMGSDDFLGVFDVSVHFSGYVP 162 (318)
Q Consensus 84 ~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~-~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 162 (318)
+++.+.+++.+.++++. +..+++||++++++ ++.++ ......+++++.+.|+++
T Consensus 59 ----~~~~~~l~~~l~~~~~~--------------~~~~~~ir~~v~r~~g~~~~-------~~~~~~~~~~i~~~~~~~ 113 (266)
T PRK09266 59 ----ALDDDRVRAQLRAALAA--------------GPADASVRVTVFAPDFDFRN-------PLADVAPDVLVATSPPAD 113 (266)
T ss_pred ----CCCHHHHHHHHHHHHhc--------------CCCcEEEEEEEEecCcccCC-------CCCCCCceEEEEEecCCc
Confidence 24788999999998831 34578999999953 32221 111235677777766543
Q ss_pred ccccccCCCceEEEecccccCccccccccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEcCCCCchhh
Q 021015 163 FVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKDNSEAED 239 (318)
Q Consensus 163 ~~~~~~~~gv~l~~~~~~r~~~~~k~~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~~~~~~~~ 239 (318)
. ..+|+++.++...|..+.. |+.++..++++ +|+++|+||+ ++|.+| +|+||+++|||++++++
T Consensus 114 ~----~~~~v~l~~~~~~r~~~~~--K~~~~l~~vla~~~a~~~g~de~l~ln~~g-~v~E~~~sNlf~v~~~~------ 180 (266)
T PRK09266 114 G----PAGPLRLQSVPYERELPHI--KHVGTFGQLHLRRLAQRAGFDDALFVDPDG-RVSEGATWNLGFWDGGA------ 180 (266)
T ss_pred C----CCCCeEEEEEEecccCCCC--CCCCcHHHHHHHHHHHHcCCCeEEEEcCCC-cEEEcCceEEEEEECCE------
Confidence 2 2468888887777765544 45566677776 5788999999 555677 99999999999999997
Q ss_pred hhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECceec
Q 021015 240 KFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHKNL 317 (318)
Q Consensus 240 ~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~~~ 317 (318)
|+||+. |+||||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|+++.+
T Consensus 181 -------------l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~ 244 (266)
T PRK09266 181 -------------VVWPQA--PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVAL 244 (266)
T ss_pred -------------EECCCC--CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEEC
Confidence 999984 79999999999999999999999999999999999999999999999 9999999876
No 17
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=3.5e-45 Score=337.23 Aligned_cols=228 Identities=24% Similarity=0.271 Sum_probs=189.0
Q ss_pred CCcceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 021015 27 QERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSM 106 (318)
Q Consensus 27 ~~G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~li~~~~ 106 (318)
++|||+|||||+++| ++++|++|++||.+||+.|+++. +++.+.+++.+.++++.
T Consensus 5 ~~GdgvFEt~r~~~g--~~~~l~~Hl~RL~~sa~~l~~~~---------------------~~~~~~~~~~i~~~~~~-- 59 (256)
T cd00449 5 HYGDGVFEGLRAGKG--RLFRLDEHLDRLNRSAKRLGLPI---------------------PYDREELREALKELVAA-- 59 (256)
T ss_pred eccceEEEEEEEcCc--EEEChHHHHHHHHHHHHHhCCCC---------------------CCCHHHHHHHHHHHHHh--
Confidence 359999999999999 99999999999999999999942 35799999999999853
Q ss_pred cccchhhhhhcCCCcceEEEEEEEeeC-CCCCCccCCCCCCCCcceEEEEEEecCCCccccccCCCceEEEeccccc---
Q 021015 107 NEALPIALKERRDGEELAVTVLVSGDY-GKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRD--- 182 (318)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~iri~v~g~~-~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~gv~l~~~~~~r~--- 182 (318)
++..+++||++|+++. +.++..+ ....+++++.+.|+++. ...+.+|+++.++...+.
T Consensus 60 -----------~~~~~~~ir~~v~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~ 121 (256)
T cd00449 60 -----------NNGASLYIRPLLTRGVGGLGVAPP------PSPEPTFVVFASPVGAY-AKGGEKGVRLITSPDRRRAAP 121 (256)
T ss_pred -----------CCCCCEEEEEEEEecccccCCCCC------CCCCcEEEEEEeecccc-ccccCCCeEEEEeeeEEeCCC
Confidence 3456899999999543 4443322 23467888888887654 233467999988877763
Q ss_pred CccccccccccchhHHH--hhCCCCCCEEE-EeCCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCceEEEccCCC
Q 021015 183 VAEAKYSDWVRLRKPLE--KLRPPSVTELL-LSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPIS 259 (318)
Q Consensus 183 ~~~~k~~~~~~~~~~l~--~a~~~G~de~l-L~~~g~~v~Eg~~sNiF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~ 259 (318)
......|+.++..++++ +|+++|+||++ +|++| +|+||+++|||++++++ |+|||++
T Consensus 122 ~~~~~~Kt~~~~~~~~a~~~a~~~g~de~llld~~g-~v~E~s~sNlf~~~~~~-------------------l~TP~~~ 181 (256)
T cd00449 122 GGTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNG-YVTEGSASNVFIVKDGE-------------------LVTPPLD 181 (256)
T ss_pred CCCccchhhCCHHHHHHHHHHHHcCCCEEEEECCCC-cEEEcCceEEEEEECCE-------------------EEeCCCC
Confidence 33445566666666654 57789999995 55567 99999999999999997 9999999
Q ss_pred CCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECceec
Q 021015 260 DGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHKNL 317 (318)
Q Consensus 260 ~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~~~ 317 (318)
+|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|+++.+
T Consensus 182 ~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~ 240 (256)
T cd00449 182 GGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGI 240 (256)
T ss_pred CCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeec
Confidence 999999999999999999999999999999999999999999999999 9999998864
No 18
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=1.5e-44 Score=338.67 Aligned_cols=237 Identities=18% Similarity=0.165 Sum_probs=191.6
Q ss_pred cccccCC---cceeEeeEEEEc-----CcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 021015 22 VSTFLQE---RRGAYTTTRTHN-----NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSM 93 (318)
Q Consensus 22 is~~~~~---G~G~FEt~rv~~-----g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (318)
+++.|++ |||+|||+|+++ | ++|+|++|++||.+||+.|+|+ +++.+.
T Consensus 2 i~~~drg~~yGdgvFEtir~~~~~~g~g--~~~~l~~Hl~RL~~sa~~l~i~----------------------~~~~~~ 57 (279)
T cd01557 2 LHPATHALHYGQAVFEGLKAYRTPDGKI--VLFRPDENAERLNRSARRLGLP----------------------PFSVEE 57 (279)
T ss_pred cCccccHhhcChhheeeEEEEecCCCCE--eEECHHHHHHHHHHHHHHhCCC----------------------CCCHHH
Confidence 5677775 999999999999 6 8999999999999999999994 247899
Q ss_pred HHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeC-CCCCCccCCCCCCCCcceEEEEEEecCCCccccccCCCc
Q 021015 94 WESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDY-GKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGA 172 (318)
Q Consensus 94 l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~-~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~gv 172 (318)
|++.+.++++.+... . +..+..+++||++|+++. +.++.. . ..+++++++.|+++.... +.+|+
T Consensus 58 l~~~i~~~i~~~~~~-~-----~~~~~~~~~ir~~v~rg~~~~g~~~-------~-~~~~~~i~~~~~~~~~~~-~~~gv 122 (279)
T cd01557 58 FIDAIKELVKLDADW-V-----PYGGGASLYIRPFIFGTDPQLGVSP-------A-LEYLFAVFASPVGAYFKG-GEKGV 122 (279)
T ss_pred HHHHHHHHHHhcccc-C-----CCCCCCCEEEEEEEEeccccCCcCC-------C-CccEEEEEEEEccccccC-CCCCe
Confidence 999999999643110 0 011345789999999554 333322 1 356788888877654322 45799
Q ss_pred eEEEecccccCcc--cccc-ccccchhHHH--hhCCCCCCEE-EEeCC-CCeEEecCcceEEEEEcCCCCchhhhhhhhc
Q 021015 173 RLALVGRGRDVAE--AKYS-DWVRLRKPLE--KLRPPSVTEL-LLSND-GDQLLEGSITNFFVVCRKDNSEAEDKFLQTC 245 (318)
Q Consensus 173 ~l~~~~~~r~~~~--~k~~-~~~~~~~~l~--~a~~~G~de~-lL~~~-g~~v~Eg~~sNiF~v~~~~~~~~~~~~~~~~ 245 (318)
++.++++.|..+. ...| +.+++.++++ +|+++|+||+ ++|.+ | +|+||+++|||++++++
T Consensus 123 ~l~~~~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~g~de~l~ld~~~g-~v~E~~~sNlf~v~~~~------------ 189 (279)
T cd01557 123 SALVSSFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDGAHG-YVAEVGTMNIFFVKDGE------------ 189 (279)
T ss_pred EEEEeeEEcCCCCCCcccchhhccHHHHHHHHHHHHCCCCEEEEEcCCCC-EEEEeCcEEEEEEECCE------------
Confidence 9988877775442 1234 3567777776 5788999999 56667 7 99999999999999997
Q ss_pred CCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECceec
Q 021015 246 NNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHKNL 317 (318)
Q Consensus 246 ~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~~~ 317 (318)
|+|||+++|+|+||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|+++.+
T Consensus 190 -------l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~ 255 (279)
T cd01557 190 -------LITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGK 255 (279)
T ss_pred -------EEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccc
Confidence 9999999999999999999999999999999999999999999999999999999 9999998764
No 19
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=2e-44 Score=332.02 Aligned_cols=224 Identities=26% Similarity=0.312 Sum_probs=186.7
Q ss_pred CCcceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 021015 27 QERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSM 106 (318)
Q Consensus 27 ~~G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~li~~~~ 106 (318)
++|||+|||||+++| ++++|++|++||.+||++|+|+ +++.+.+++.|.++++.
T Consensus 5 ~~GdgvFEt~~~~~g--~~~~l~~Hl~RL~~Sa~~l~~~----------------------~~~~~~l~~~i~~~i~~-- 58 (249)
T cd01559 5 AYGDGVFETMRALDG--RLFLLDAHLARLERSARRLGIP----------------------EPDLPRLRAALESLLAA-- 58 (249)
T ss_pred cccceeEEEEEEECC--EEccHHHHHHHHHHHHHhcCcC----------------------CCCHHHHHHHHHHHHHh--
Confidence 459999999999999 8999999999999999999993 25789999999999963
Q ss_pred cccchhhhhhcCCCcceEEEEEEE-eeCCCCCCccCCCCCCCCcceEEEEEEecCCCccccccCCCceEEEecccc--cC
Q 021015 107 NEALPIALKERRDGEELAVTVLVS-GDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGR--DV 183 (318)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~iri~v~-g~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~gv~l~~~~~~r--~~ 183 (318)
++.++++||++|+ |.+++++..+ ....+.+++.+.|+++ ..+.+|+++.++...| +.
T Consensus 59 -----------~~~~~~~ir~~v~rg~~~~~~~~~------~~~~~~~~i~~~~~~~---~~~~~gv~l~~~~~~~~~~~ 118 (249)
T cd01559 59 -----------NDIDEGRIRLILSRGPGGRGYAPS------VCPGPALYVSVIPLPP---AWRQDGVRLITCPVRLGEQP 118 (249)
T ss_pred -----------CCCCceEEEEEEecCCCCCCCCCC------CCCCCEEEEEeccCCH---HHHhCCcEEEEcccccCCCC
Confidence 3446789999999 4444444432 1235677777777654 2234689998887766 33
Q ss_pred ccccccccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCceEEEccCCCC
Q 021015 184 AEAKYSDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISD 260 (318)
Q Consensus 184 ~~~k~~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~ 260 (318)
.....|+.++..++++ +|+++|+||+ ++|.+| +|+||+++|||++++++ |+|||+++
T Consensus 119 ~~~~~Kt~ny~~~~~a~~~a~~~g~de~l~l~~~g-~v~E~~~~Nif~~~~~~-------------------~~TP~~~~ 178 (249)
T cd01559 119 LLAGLKHLNYLENVLAKREARDRGADEALFLDTDG-RVIEGTASNLFFVKDGE-------------------LVTPSLDR 178 (249)
T ss_pred CCCCcchhhhHHHHHHHHHHHhcCCCEEEEEcCCC-CEEEecceEEEEEECCE-------------------EECCCccc
Confidence 4555667677777766 4788999999 456677 99999999999999997 99999999
Q ss_pred CCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEECcee
Q 021015 261 GVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHKN 316 (318)
Q Consensus 261 giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~~ 316 (318)
|+||||||+.||++|+++|++|+|+.++++||.+|||+|+|||++|| ||++|++..
T Consensus 179 g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~id~~~ 235 (249)
T cd01559 179 GGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAIDDHD 235 (249)
T ss_pred CccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCccceeEEEEECCcc
Confidence 99999999999999999999999999999999999999999999999 999999753
No 20
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=2.1e-44 Score=342.74 Aligned_cols=253 Identities=16% Similarity=0.174 Sum_probs=193.9
Q ss_pred EECCeEecCCCCCccccccCC---cceeEeeEEEE---cCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 021015 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (318)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~---~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (318)
|+||+++ +.+++.+++.|+| |||+|||||++ +|..++|+|++|++||.+||++|+|+.
T Consensus 1 ~~nG~~~-~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~--------------- 64 (313)
T TIGR01123 1 WHNGRLT-PYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPE--------------- 64 (313)
T ss_pred CCCCEEE-ECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCC---------------
Confidence 6899999 9999999999996 99999999998 772126788999999999999999931
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCC-CCCCccCCCCCCCCcceEEEEEEecC
Q 021015 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHFSGY 160 (318)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~-~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (318)
.+.+.|++.++++++.+..... .......++||++|+++++ .++..+ ..+.+++.+.|+
T Consensus 65 -------~~~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~~ir~~v~~~~~~~g~~~~--------~~~~~~i~~~~~ 124 (313)
T TIGR01123 65 -------LPDELFLEALRQLVKANKDWVP-----PYGSGASLYLRPFVIGTEPNLGVRPA--------PEYLFYVFASPV 124 (313)
T ss_pred -------CCHHHHHHHHHHHHHHccccCC-----CCCCCCcEEEEeEEEecCCccccCCC--------CccEEEEEEEEc
Confidence 3788999999999975321000 0011346889999995542 232221 246777777776
Q ss_pred CCccccccCCCceEEE-ecccccCc--cccccc-cccchhHHH--hhCCCCCCEE-EEeCCC-CeEEecCcceEEEEEc-
Q 021015 161 VPFVFGVEGTGARLAL-VGRGRDVA--EAKYSD-WVRLRKPLE--KLRPPSVTEL-LLSNDG-DQLLEGSITNFFVVCR- 231 (318)
Q Consensus 161 ~~~~~~~~~~gv~l~~-~~~~r~~~--~~k~~~-~~~~~~~l~--~a~~~G~de~-lL~~~g-~~v~Eg~~sNiF~v~~- 231 (318)
++.... ..+++++.+ ....|..+ .+..|+ .+++.++++ +|+++|+||+ +||.+| ++|+|++++|||++++
T Consensus 125 ~~~~~~-~~~~~~~~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~ 203 (313)
T TIGR01123 125 GAYFKG-GLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGD 203 (313)
T ss_pred hhhccc-cccceeEEecccceecCCCCCccceeccccHHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcC
Confidence 432111 012345443 33344332 345566 477778776 5889999999 566676 2499999999999996
Q ss_pred CCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcc----cEEEEeccccce
Q 021015 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELW----KEAFITSVLLFN 307 (318)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~a----dE~Fltns~~gi 307 (318)
|+ |+|||+++|||+||||+.||++|+++|++|+|++++++||.+| ||+|+|||++||
T Consensus 204 g~-------------------l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~devfltnS~~gi 264 (313)
T TIGR01123 204 GE-------------------LVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVI 264 (313)
T ss_pred CE-------------------EEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEEecCHHHHHHHHhcCCEEEEccCceEE
Confidence 56 9999999999999999999999999999999999999999999 999999999999
Q ss_pred -EEEEE--Ccee
Q 021015 308 -VVTTI--GHKN 316 (318)
Q Consensus 308 -pV~~i--~~~~ 316 (318)
||++| +++.
T Consensus 265 ~PV~~i~~d~~~ 276 (313)
T TIGR01123 265 TPVGEIQHGGKE 276 (313)
T ss_pred EEEEEEEECCeE
Confidence 99999 6654
No 21
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=4e-44 Score=346.43 Aligned_cols=250 Identities=14% Similarity=0.138 Sum_probs=197.4
Q ss_pred EECCeEecCCCCCccccccCC---cceeEeeEEEEc---CcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 021015 8 FSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (318)
Q Consensus 8 ~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~~---g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (318)
|+||+++ +.+++.+++.|++ |||+|||+|+++ |..++|+|++|++||.+||+.|+|+
T Consensus 42 ~~nG~~v-p~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f~l~~Hl~RL~~Sa~~L~i~---------------- 104 (356)
T PRK13357 42 WHDARLV-PYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLFRPDANAKRLQRSADRLLMP---------------- 104 (356)
T ss_pred ccCCeEe-eCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCCC----------------
Confidence 9999999 9999999999986 999999999984 4235788999999999999999993
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCC-CCCCccCCCCCCCCcceEEEEEEecC
Q 021015 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHFSGY 160 (318)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~-~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (318)
+++.+.|++.+.++++.+..... .......++||++++++.+ .++.. ...+++++.+.|+
T Consensus 105 ------~~~~~~l~~~i~~li~~n~~~~~-----~~~~~~~~~ir~~v~rg~~~~g~~~--------~~~~~~~i~~~~~ 165 (356)
T PRK13357 105 ------ELPEELFLEAVKQLVKADRDWVP-----PYGEGASLYLRPFMIATEPFLGVKP--------AEEYIFCVIASPV 165 (356)
T ss_pred ------CCCHHHHHHHHHHHHHhcccccC-----CCCCCccEEEEEEEEccCCcccccC--------CCccEEEEEEEec
Confidence 14789999999999975321000 0001246799999995542 33221 1246788887776
Q ss_pred CCccccccCCCceEEEe-cccccCc--cccccc-cccchhHHH--hhCCCCCCEE-EEeC--CCCeEEecCcceEEEEEc
Q 021015 161 VPFVFGVEGTGARLALV-GRGRDVA--EAKYSD-WVRLRKPLE--KLRPPSVTEL-LLSN--DGDQLLEGSITNFFVVCR 231 (318)
Q Consensus 161 ~~~~~~~~~~gv~l~~~-~~~r~~~--~~k~~~-~~~~~~~l~--~a~~~G~de~-lL~~--~g~~v~Eg~~sNiF~v~~ 231 (318)
++.... ..+|+++.+. ...|..+ .+..|+ .+++.++++ +|+++|+||+ +|+. +| +|+||+++|||+|++
T Consensus 166 ~~~~~~-~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G-~V~E~s~sNlF~v~~ 243 (356)
T PRK13357 166 GAYFKG-GVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHT-YIEEVGGMNFFFITK 243 (356)
T ss_pred hhhccc-CCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCC-EEEEcCcEEEEEEEC
Confidence 543221 1257777665 4555433 344566 577778776 5889999999 5553 56 999999999999999
Q ss_pred CCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhh------HhcccEEEEecccc
Q 021015 232 KDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQ------HELWKEAFITSVLL 305 (318)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~d------L~~adE~Fltns~~ 305 (318)
++ |+|||++.|||+||||+.||++|+++|++|+|+.++++| |.+|||+|+|||+.
T Consensus 244 ~~-------------------l~TPpl~~giL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~AdevFltnS~~ 304 (356)
T PRK13357 244 DG-------------------TVTPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAA 304 (356)
T ss_pred CE-------------------EEECCCCCCCCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcceEEEEccccc
Confidence 97 999999999999999999999999999999999999999 89999999999999
Q ss_pred ce-EEEEECc
Q 021015 306 FN-VVTTIGH 314 (318)
Q Consensus 306 gi-pV~~i~~ 314 (318)
|| ||++|++
T Consensus 305 gi~PV~~id~ 314 (356)
T PRK13357 305 VITPIGGIKY 314 (356)
T ss_pred EEEEEEEEEe
Confidence 99 9999983
No 22
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=8.4e-44 Score=343.98 Aligned_cols=253 Identities=18% Similarity=0.181 Sum_probs=200.2
Q ss_pred cEEEECCeEecCCCCCccccccCC---cceeEeeEEEE---cCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 021015 5 RIVFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSG 78 (318)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~---~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~ 78 (318)
..+|+||+++ +.+++.+++.|++ |||+|||||++ +|..++|+|++|++||.+||++|+|+.
T Consensus 43 ~~~~~ng~~v-~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~l~~Hl~RL~~Sa~~L~i~~------------ 109 (355)
T PLN03117 43 GESFSEGKIV-PYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTP------------ 109 (355)
T ss_pred CCeEECCEEE-EchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeCcHHHHHHHHHHHHHhCCCC------------
Confidence 3689999999 9999999999986 99999999999 672227889999999999999999932
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCC-CCCCccCCCCCCCCcceEEEEEE
Q 021015 79 LEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHF 157 (318)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~-~~~~~~~~g~~~~~~~~~~~v~~ 157 (318)
+ +.+.|++.|.++++.+.. ++ ........+||++++|+++ .++ .+ ...+.+++++
T Consensus 110 ---------p-~~~~l~~~i~~lv~~n~~-~i-----~~~~~~~~yir~~~~g~~~~~g~-------~~-~~~~~~~i~~ 165 (355)
T PLN03117 110 ---------P-SLEQFVEAVKQTVLANKK-WV-----PPPGKGTLYIRPLLIGSGAVLGV-------AP-APEYTFLIYA 165 (355)
T ss_pred ---------C-CHHHHHHHHHHHHHhccc-cc-----cCCCCCcEEEEEEEEEecCccCc-------CC-CCCcEEEEEE
Confidence 2 689999999999975421 10 0012346789999985542 221 11 1245677777
Q ss_pred ecCCCccccccCCCceEEEec-ccccC--cccccccc-ccchhHHH--hhCCCCCCEE-EEeCC-CCeEEecCcceEEEE
Q 021015 158 SGYVPFVFGVEGTGARLALVG-RGRDV--AEAKYSDW-VRLRKPLE--KLRPPSVTEL-LLSND-GDQLLEGSITNFFVV 229 (318)
Q Consensus 158 ~~~~~~~~~~~~~gv~l~~~~-~~r~~--~~~k~~~~-~~~~~~l~--~a~~~G~de~-lL~~~-g~~v~Eg~~sNiF~v 229 (318)
.|+++... ..+|+++.+.. ..|.. ..+..|+. +++.++++ +|+++|+||+ +||.+ +++|+|++++|||+|
T Consensus 166 ~p~~~~~~--~~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v 243 (355)
T PLN03117 166 SPVGNYHK--ASSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFIL 243 (355)
T ss_pred Eecccccc--CCCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEE
Confidence 77754322 24688887754 34433 24455664 67777776 5789999999 56664 349999999999999
Q ss_pred EcCCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-E
Q 021015 230 CRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-V 308 (318)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-p 308 (318)
++++ |+||+++++||+||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+| |
T Consensus 244 ~~~~-------------------l~TP~l~~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~P 304 (355)
T PLN03117 244 KGNI-------------------VSTPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKA 304 (355)
T ss_pred ECCE-------------------EEeCCCcCCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEccCcceEEE
Confidence 9987 9999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEECce
Q 021015 309 VTTIGHK 315 (318)
Q Consensus 309 V~~i~~~ 315 (318)
|.+|+..
T Consensus 305 V~~i~~~ 311 (355)
T PLN03117 305 VETVTFH 311 (355)
T ss_pred EEEEEec
Confidence 9999854
No 23
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.6e-42 Score=339.26 Aligned_cols=253 Identities=17% Similarity=0.151 Sum_probs=198.8
Q ss_pred EEECCeEecCCCCCccccccCC---cceeEeeEEEE---cCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 021015 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (318)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~---~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~ 80 (318)
-|.||+++ +.+++.+++.|++ |||+|||||++ +|..++|++++|++||.+||++|+|+.
T Consensus 95 ~w~ng~iv-p~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~d~H~~RL~~SA~rL~lp~-------------- 159 (403)
T PLN02782 95 EFSKGELQ-RFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAIRMRNGAERMCMPA-------------- 159 (403)
T ss_pred cEeCCEEE-ECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeChHHHHHHHHHHHHHhCcCC--------------
Confidence 58999999 9999999998875 99999999998 443347999999999999999999932
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCC-CCCCccCCCCCCCCcceEEEEEEec
Q 021015 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHFSG 159 (318)
Q Consensus 81 ~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~-~~~~~~~~g~~~~~~~~~~~v~~~~ 159 (318)
.+.+.|.+.|+++++.+.. |+|. ......|||++++|+++ .++.. . ..+++++.+.|
T Consensus 160 --------~~~e~l~~~i~~lv~~n~~-~vP~-----~~~~~lyiRp~v~g~~~~lG~~~-------~-~~~~~~i~~~p 217 (403)
T PLN02782 160 --------PTVEQFVEAVKETVLANKR-WVPP-----PGKGSLYIRPLLMGSGAVLGLAP-------A-PEYTFLIYVSP 217 (403)
T ss_pred --------CCHHHHHHHHHHHHHhccc-cCCC-----CCCccEEEEEEEEecCCCcCcCC-------C-CCcEEEEEEEE
Confidence 2689999999999976532 2211 12347899999996542 22221 1 35778888888
Q ss_pred CCCccccccCCCceEEEec-ccccCc--ccccccc-ccchhHHH--hhCCCCCCEE-EEeC--CCCeEEecCcceEEEEE
Q 021015 160 YVPFVFGVEGTGARLALVG-RGRDVA--EAKYSDW-VRLRKPLE--KLRPPSVTEL-LLSN--DGDQLLEGSITNFFVVC 230 (318)
Q Consensus 160 ~~~~~~~~~~~gv~l~~~~-~~r~~~--~~k~~~~-~~~~~~l~--~a~~~G~de~-lL~~--~g~~v~Eg~~sNiF~v~ 230 (318)
+++.... ..+++++.+.. ..|..+ ....|.. ++....++ +|+++|++|+ +||. +| +|+|++++|||+|+
T Consensus 218 ~~~~~~~-g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g-~V~E~~~sNlF~v~ 295 (403)
T PLN02782 218 VGNYFKE-GVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKK-YLEEVSSCNIFIVK 295 (403)
T ss_pred Ccccccc-CCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCC-EEEEcCcEEEEEEE
Confidence 7643211 12366776653 555443 2333444 44444544 5889999999 5663 56 99999999999999
Q ss_pred cCCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EE
Q 021015 231 RKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VV 309 (318)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV 309 (318)
+++ |+||+++.+|||||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+| ||
T Consensus 296 ~~~-------------------l~TP~l~~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV 356 (403)
T PLN02782 296 DNV-------------------ISTPAIKGTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPV 356 (403)
T ss_pred CCE-------------------EEcCCCcCCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEEE
Confidence 987 9999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEE--Cceec
Q 021015 310 TTI--GHKNL 317 (318)
Q Consensus 310 ~~i--~~~~~ 317 (318)
.+| +++.+
T Consensus 357 ~~I~~~g~~~ 366 (403)
T PLN02782 357 GSITYKGKRV 366 (403)
T ss_pred EEEEECCEEE
Confidence 999 77764
No 24
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=8.4e-42 Score=332.69 Aligned_cols=248 Identities=18% Similarity=0.146 Sum_probs=195.0
Q ss_pred EEECCeEecCCCCCccccccCC---cceeEeeEEEE---cCcccc--cCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 021015 7 VFSNGVVSQASDTPSVSTFLQE---RRGAYTTTRTH---NNGSCL--LFWERHLRRLASSARILYNSSPNLLFKSPTPSG 78 (318)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~~---G~G~FEt~rv~---~g~~~i--~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~ 78 (318)
.|.||+++ +.+++.+++.|++ |||+|||||++ +| ++ |+++.|++||.+||++|+|+.
T Consensus 81 ~w~~g~iv-p~~~~~i~~~drgl~YGdgvFEglkayr~~~G--~i~lfr~~~h~~RL~~SA~rL~lp~------------ 145 (388)
T PLN02259 81 EFTQGELS-PYGNIQLSPSAGVLNYGQAIYEGTKAYRKENG--KLLLFRPDHNAIRMKLGAERMLMPS------------ 145 (388)
T ss_pred eEECCEEe-EchhCeeCchhhHHHhhhhhhhcEEEEECCCC--eEeecCcHHHHHHHHHhHHHhCCCC------------
Confidence 69999999 9999999999875 99999999999 77 56 778999999999999999932
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCC-CCCCccCCCCCCCCcceEEEEEE
Q 021015 79 LEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVHF 157 (318)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~-~~~~~~~~g~~~~~~~~~~~v~~ 157 (318)
++.+.+.+.|.++++.+.. |+| .......+||+++.|.++ .++.. ...+++++.+
T Consensus 146 ----------~~~e~~~~~i~~lv~~n~~-~vp-----~~~~~~lyiRp~v~g~~~~lG~~p--------~~~~~~~i~~ 201 (388)
T PLN02259 146 ----------PSVDQFVNAVKQTALANKR-WVP-----PAGKGTLYIRPLLMGSGPILGLGP--------APEYTFIVYA 201 (388)
T ss_pred ----------cCHHHHHHHHHHHHHhccc-cCC-----CCCCceEEEEEEEEecCCccCcCC--------CCCcEEEEEE
Confidence 2689999999999986532 221 112346899998886653 23222 1367788888
Q ss_pred ecCCCccccccCCCceEEEe-cccccCc--ccccccc-ccchhHHH--hhCCCCCCEE-EEeC--CCCeEEecCcceEEE
Q 021015 158 SGYVPFVFGVEGTGARLALV-GRGRDVA--EAKYSDW-VRLRKPLE--KLRPPSVTEL-LLSN--DGDQLLEGSITNFFV 228 (318)
Q Consensus 158 ~~~~~~~~~~~~~gv~l~~~-~~~r~~~--~~k~~~~-~~~~~~l~--~a~~~G~de~-lL~~--~g~~v~Eg~~sNiF~ 228 (318)
.|+++.... .-+++++.+. ...|..+ ....|.. ++....++ +|+++|+||+ +||. +| +|+|++++|||+
T Consensus 202 ~p~~~~~~~-g~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g-~V~E~~~sNlF~ 279 (388)
T PLN02259 202 SPVGNYFKE-GMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKK-YLEEASSCNVFV 279 (388)
T ss_pred Eechhhhhc-CcceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEecCCCCC-EEEEcCcEEEEE
Confidence 887653211 0113345543 3555443 2334443 44444543 5889999999 6665 56 999999999999
Q ss_pred EEcCCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-
Q 021015 229 VCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN- 307 (318)
Q Consensus 229 v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi- 307 (318)
|++++ |+|||++++|||||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+|
T Consensus 280 v~~~~-------------------l~TP~l~~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~V~ 340 (388)
T PLN02259 280 VKGRT-------------------ISTPATNGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVA 340 (388)
T ss_pred EECCE-------------------EEcCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcceEE
Confidence 99887 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECc
Q 021015 308 VVTTIGH 314 (318)
Q Consensus 308 pV~~i~~ 314 (318)
||.+|++
T Consensus 341 PV~~I~~ 347 (388)
T PLN02259 341 PVGTITY 347 (388)
T ss_pred EEEEEec
Confidence 9999986
No 25
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.1e-41 Score=316.12 Aligned_cols=248 Identities=25% Similarity=0.302 Sum_probs=198.8
Q ss_pred cEEEECCeEecCCCCCccccccC---CcceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 021015 5 RIVFSNGVVSQASDTPSVSTFLQ---ERRGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (318)
Q Consensus 5 ~~~~~nG~~~~~~~~~~is~~~~---~G~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (318)
.++|+||+++ +.+++.+++.|+ +|+|+|||+|+++| ++|+|++|++||.+||+.|+|+.|
T Consensus 2 ~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~vFE~~r~~~g--~~~~l~~H~~RL~~Sa~~l~~~~~-------------- 64 (284)
T COG0115 2 GKIWVNGELV-PEEDAKLSVLDRGLHYGDGVFETLRAYNG--KLFRLDEHLARLKRSAKRLGLPRP-------------- 64 (284)
T ss_pred CeEeECCEEc-cCcccccCcccceeccccceeEEEEEeCC--cccChHHHHHHHHHHHHHhCCCCC--------------
Confidence 4689999999 999999999986 49999999999998 899999999999999999999433
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCCCCCCccCCCCCCCCcceEEEEEEecCC
Q 021015 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (318)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (318)
.+.+.+....+.++..+ +.....|+|+++.+.++.. |... ...+.+.+.+.|++
T Consensus 65 -------~~~~~~~~~~~~~~~~~------------~~~~~~y~r~~~~~~~~~~------~~~~-~~~~~~~v~~~~~~ 118 (284)
T COG0115 65 -------ESEEEIELLIQLLLAKN------------NLVPGLYIRPLVRGGGGGL------GVRD-ATEPTLIVAASPVG 118 (284)
T ss_pred -------CCHHHHHHHHHHHHHhh------------CCCCceEEEEEEEeecCCC------CcCC-CCccEEEEEEEecc
Confidence 47888887777777531 2223488888888765432 2222 34577888888998
Q ss_pred Cccccc-cCCCceEEEec-ccccCc--cccccccccchhHHH--hhCCCCCCEEEE-eCCCCeEEecCcceEEEEE-cCC
Q 021015 162 PFVFGV-EGTGARLALVG-RGRDVA--EAKYSDWVRLRKPLE--KLRPPSVTELLL-SNDGDQLLEGSITNFFVVC-RKD 233 (318)
Q Consensus 162 ~~~~~~-~~~gv~l~~~~-~~r~~~--~~k~~~~~~~~~~l~--~a~~~G~de~lL-~~~g~~v~Eg~~sNiF~v~-~~~ 233 (318)
+..... ...|+.+.+.. .++.++ ....++.++..+.++ +|+++|++|+|+ +.+| +|+||+++|||+++ +|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~k~~~y~~~~~a~~~A~~~G~~eal~~~~~G-~V~Eg~~sNvf~v~~dg~ 197 (284)
T COG0115 119 AYLKGGRLEKGVVLVISSPVRRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLLDEDG-YVTEGAGSNVFFVKGDGV 197 (284)
T ss_pred cccCcccccCCeEEEEeehhhccCCCcchhhhhcccHHHHHHHHHHHHCCCCEEEEecCCC-eEEEcCcceEEEEEECCE
Confidence 754322 23466665543 333333 233456666666665 588999999955 5577 99999999999999 666
Q ss_pred CCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEE
Q 021015 234 NSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTI 312 (318)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i 312 (318)
++||+++.++||||||+.+|++|+++|++++|+.++.+||.+|||+|+|||+++| ||.+|
T Consensus 198 -------------------~~TP~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~~adevf~t~t~~~v~PV~~i 258 (284)
T COG0115 198 -------------------LVTPPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLI 258 (284)
T ss_pred -------------------EECCCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHhhCCEEEEEccceEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999 99999
Q ss_pred Cce
Q 021015 313 GHK 315 (318)
Q Consensus 313 ~~~ 315 (318)
+++
T Consensus 259 ~~~ 261 (284)
T COG0115 259 DGR 261 (284)
T ss_pred CCc
Confidence 775
No 26
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=4.1e-40 Score=320.31 Aligned_cols=253 Identities=17% Similarity=0.123 Sum_probs=193.7
Q ss_pred EEECCeEecCCCCCccccccC---CcceeEeeEEEEc---CcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 021015 7 VFSNGVVSQASDTPSVSTFLQ---ERRGAYTTTRTHN---NGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLE 80 (318)
Q Consensus 7 ~~~nG~~~~~~~~~~is~~~~---~G~G~FEt~rv~~---g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~ 80 (318)
-|.+++++ |.....+++.++ +|||+|||||+++ |....|+++.|++||.+||++|+|+.
T Consensus 77 ~w~~~~i~-p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~-------------- 141 (384)
T PLN02883 77 NFEQGYLS-RYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHS-------------- 141 (384)
T ss_pred cccCCeEe-eCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCC--------------
Confidence 58899999 888888888765 5999999999994 52233578899999999999999931
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCCCCCCccCCCCCCCCcceEEEEEEecC
Q 021015 81 PIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGY 160 (318)
Q Consensus 81 ~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~~~~~~~~~g~~~~~~~~~~~v~~~~~ 160 (318)
++.+.|.+.|+++++.+.. |+|. .+....|||++++|+++. +|.. +...++++|.+.|+
T Consensus 142 --------~~~e~~~~~i~~lv~~n~~-wvp~-----~~~~~lYIRp~v~~~~~~------lG~~-~~~~~~~~i~~~p~ 200 (384)
T PLN02883 142 --------PSVHQFIEGVKQTVLANRR-WVPP-----PGKGSLYLRPLLFGSGAS------LGVA-AAPEYTFLVFGSPV 200 (384)
T ss_pred --------cCHHHHHHHHHHHHHhccc-cCCC-----CCCceEEEEEEEEecCCc------cCCC-CCCCeEEEEEEEec
Confidence 2799999999999986532 2211 123578999999966532 1222 12457888888888
Q ss_pred CCccccccCCCceEEEecc-cccCc--ccccccc-ccchhHHH--hhCCCCCCEE-EEeCC-CCeEEecCcceEEEEEcC
Q 021015 161 VPFVFGVEGTGARLALVGR-GRDVA--EAKYSDW-VRLRKPLE--KLRPPSVTEL-LLSND-GDQLLEGSITNFFVVCRK 232 (318)
Q Consensus 161 ~~~~~~~~~~gv~l~~~~~-~r~~~--~~k~~~~-~~~~~~l~--~a~~~G~de~-lL~~~-g~~v~Eg~~sNiF~v~~~ 232 (318)
++.... ..+++++.+... .|..+ ....|.. ++....++ +|+++|+||+ +||.+ +++|+|++++|||+|+++
T Consensus 201 ~~y~~~-g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~ 279 (384)
T PLN02883 201 QNYFKE-GTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGN 279 (384)
T ss_pred cccccc-CcceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECC
Confidence 653211 113566666543 44332 2333444 34444444 6889999999 66755 349999999999999988
Q ss_pred CCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEE
Q 021015 233 DNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTT 311 (318)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~ 311 (318)
+ |+|||++++|||||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+| ||.+
T Consensus 280 ~-------------------l~TP~l~~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~ 340 (384)
T PLN02883 280 I-------------------IVTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGS 340 (384)
T ss_pred E-------------------EEeCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheEEEEE
Confidence 7 9999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ECce
Q 021015 312 IGHK 315 (318)
Q Consensus 312 i~~~ 315 (318)
|+++
T Consensus 341 I~~~ 344 (384)
T PLN02883 341 ITFK 344 (384)
T ss_pred Eecc
Confidence 9954
No 27
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-37 Score=277.72 Aligned_cols=198 Identities=23% Similarity=0.248 Sum_probs=160.0
Q ss_pred ceeEeeEEEE-cCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhcc
Q 021015 30 RGAYTTTRTH-NNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNE 108 (318)
Q Consensus 30 ~G~FEt~rv~-~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~li~~~~~~ 108 (318)
.++|||||++ +| ++++|++|++||.+||+.|+++ ++.+.|++.+.++++.
T Consensus 4 ~~lfETi~~~~~G--~~~~l~~Hl~RL~~sa~~l~~~-----------------------~~~~~l~~~l~~~~~~---- 54 (209)
T PRK07546 4 FELIETLRWEPGA--GFPRLDRHLARLERSARALGFP-----------------------CDPAAVRAKLAEAVAG---- 54 (209)
T ss_pred ccEEEEEEEeCCC--CcccHHHHHHHHHHHHHHhCCC-----------------------CCHHHHHHHHHHHhhc----
Confidence 5899999999 98 9999999999999999999982 2467888888888742
Q ss_pred cchhhhhhcCCCcceEEEEEEEeeCCCCCCccCCCCCCCCcceEEEEEEecCCCccccccCCCceEEEeccccc--Cccc
Q 021015 109 ALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRD--VAEA 186 (318)
Q Consensus 109 ~~~~~~~~~~~~~~~~iri~v~g~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~gv~l~~~~~~r~--~~~~ 186 (318)
+ .+.++||+++++++ ++++...|+++... ..++++.+....+. .+..
T Consensus 55 ---------~-~~~~~vrl~~~~~g------------------~~~i~~~p~~~~~~---~~~~~l~~~~~~~~~~~~~~ 103 (209)
T PRK07546 55 ---------A-QGPLRLRLTLARDG------------------RLTVETAPLPPLPP---DTVWRVAIARTRLDSADPLL 103 (209)
T ss_pred ---------c-CCCeEEEEEEcCCC------------------CEEEEEecCCCCCC---CCcEEEEEcCcccCCCCcch
Confidence 2 35688999988542 13456677754221 23556666554443 3456
Q ss_pred cccccccchhHHH--hhCCCCCCEEE-EeCCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCceEEE-ccCCCCCC
Q 021015 187 KYSDWVRLRKPLE--KLRPPSVTELL-LSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQ-TAPISDGV 262 (318)
Q Consensus 187 k~~~~~~~~~~l~--~a~~~G~de~l-L~~~g~~v~Eg~~sNiF~v~~~~~~~~~~~~~~~~~~~~~~~l~-TPpl~~gi 262 (318)
+.|+.++..++++ +|+++|+||++ +|.+| +|+||+++|||++++++ |+ |||++.|+
T Consensus 104 ~~Kt~nr~~~v~a~~~a~~~g~de~l~l~~~G-~v~E~s~~Ni~~~~~~~-------------------~~~TP~~~~g~ 163 (209)
T PRK07546 104 RYKTTRRAAYDAARAELPPAEADEVILLNERG-EVCEGTITNVFLDRGGG-------------------MLTTPPLSCGL 163 (209)
T ss_pred hcccCChHHHHHHHHHHhhCCCCEEEEECCCC-cEEEcCceeEEEEECCE-------------------EEECCCCcCCC
Confidence 6777777777666 46779999995 56677 99999999999999998 99 99999999
Q ss_pred ccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce-EEEEE
Q 021015 263 LPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN-VVTTI 312 (318)
Q Consensus 263 L~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i 312 (318)
|+||||+.+++. ++|+|+.++++||.+|||+|+|||++|+ ||..|
T Consensus 164 L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 164 LPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred CccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 999999999984 6899999999999999999999999999 99865
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=2.9e-36 Score=273.13 Aligned_cols=213 Identities=27% Similarity=0.309 Sum_probs=150.5
Q ss_pred cCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEE
Q 021015 46 LFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAV 125 (318)
Q Consensus 46 ~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~i 125 (318)
|+|++|++||.+||+.+ +. .+++.+.|++.++++++.+ ....+++|
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~---------------------~~~~~~~l~~~i~~~~~~~------------~~~~~~~i 46 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IG---------------------LPFSREELREIIQELLEAN------------PDQGEGYI 46 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TT---------------------HSSHHHHHHHHHHHHHHHT------------TSSSSEEE
T ss_pred CCHHHHHHHHHHHHHHH-cc---------------------CCcCHHHHHHHHHHHHHHc------------CCCCCcEE
Confidence 78999999999999999 42 1358999999999999642 12467799
Q ss_pred EEEEEeeCCC-CCCccCCCCCCCCcceEEEEEEecCCCccccccCCCceEEEecccccCccccccccccchhHH---Hhh
Q 021015 126 TVLVSGDYGK-LSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPL---EKL 201 (318)
Q Consensus 126 ri~v~g~~~~-~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~k~~~~~~~~~~l---~~a 201 (318)
|++++++.+. ++..+ . ...+.......+............+.+.....++..+....|+.++..+.+ ..|
T Consensus 47 r~~v~~g~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~~~~~~~~~~~~~a 120 (231)
T PF01063_consen 47 RITVTRGGGPLGGSPP----E--NSAPPPFSIAPPRRPPPPLVGSVGVRRASPPLPRPNPLPRHKTTNRLANVLAALRAA 120 (231)
T ss_dssp EEEEEETSSSSSSSEC----S--EEEEEEEEEETCHHHHEEEEEECSEECETTTSE-TTTSTTS-BSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcCccCc----c--ccccccccccccccCCcceeeeeeEEeccccccccCCCCCeeECCcchhhHHHHHHH
Confidence 9999965432 21211 0 011111111111111111111112222222223333345556666666555 346
Q ss_pred CCCCCCEE-EEeCCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCC
Q 021015 202 RPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGI 280 (318)
Q Consensus 202 ~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi 280 (318)
+++|+||+ ++|.+| +|+||+++|||++++++ |+|||++.|+|+||||+.+|++|+++|+
T Consensus 121 ~~~g~de~ll~d~~G-~v~E~~~sNif~~~~~~-------------------~~TP~~~~giL~Gitr~~ll~~~~~~g~ 180 (231)
T PF01063_consen 121 REKGADEALLLDEDG-NVTEGSTSNIFFVKDGT-------------------LYTPPLDSGILPGITRQLLLELAKELGI 180 (231)
T ss_dssp HHTTSSEEEEEETTS-BEEEESSSEEEEEETTE-------------------EEEESGSSSSB--HHHHHHHHHHHHTTS
T ss_pred HhcCcchhheecCCC-CcCCCCCcccccccCCE-------------------EEcCChhhhhccHHHHHHHHHHHHhCCC
Confidence 67899998 677788 99999999999999998 9999999999999999999999999999
Q ss_pred cEEEEecCHhhHhcccEEEEeccccce-EEEEECceecC
Q 021015 281 PIRELASSWSQHELWKEAFITSVLLFN-VVTTIGHKNLS 318 (318)
Q Consensus 281 ~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i~~~~~~ 318 (318)
+|+|+.++++||.+|||+|+|||++|| ||++|+++.+.
T Consensus 181 ~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~~~~~~ 219 (231)
T PF01063_consen 181 PVEERPITLDDLQQADEVFLTNSLRGIRPVKSIDGRSFG 219 (231)
T ss_dssp EEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEETTEEST
T ss_pred CcEEEEeCHHHhhhhhheEEecchhhEEEEEEECCEECC
Confidence 999999999999999999999999999 99999999863
No 29
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=99.98 E-value=1.2e-31 Score=253.63 Aligned_cols=254 Identities=20% Similarity=0.204 Sum_probs=198.5
Q ss_pred EECCeEecCCCCCcccc---ccCCcceeEeeEEEEcC---cccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 021015 8 FSNGVVSQASDTPSVST---FLQERRGAYTTTRTHNN---GSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEP 81 (318)
Q Consensus 8 ~~nG~~~~~~~~~~is~---~~~~G~G~FEt~rv~~g---~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~ 81 (318)
|.-|.+. +.....+++ .+|+|+|+||.|+++++ .+++|+.+.|+.|+.+||.++-|+
T Consensus 70 w~~~~I~-p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrPd~N~~Rm~~sA~r~~lP---------------- 132 (379)
T KOG0975|consen 70 WSQGEIS-PFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRPDQNMDRMLRSAERACLP---------------- 132 (379)
T ss_pred cCCCCcc-CcCCEeeChhhhceecchhhccccccccCCCCeEEEecchhhHHHHHhhhhhccCC----------------
Confidence 4455555 544444443 46789999999999876 356899999999999999999982
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhcccchhhhhhcCCCcceEEEEEEEeeCCCCCCccCCCCCCCCcceEEEEEEecCC
Q 021015 82 IRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYV 161 (318)
Q Consensus 82 ~~~~~~~~~~~~l~~~i~~li~~~~~~~~~~~~~~~~~~~~~~iri~v~g~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 161 (318)
+++.+++-+.|++++..+.+ |+ +..+....|||.++.|++.- +|+. .+.+++++++++|..
T Consensus 133 ------~p~~~e~ie~i~~lv~~~~~-wV-----P~~~~~SLyirp~l~Gt~~~------Lgv~-~~~e~~l~vi~spvg 193 (379)
T KOG0975|consen 133 ------SPDVEEFIEAIKQLVLADKE-WV-----PPPGKGSLYIRPLLIGTDPV------LGVS-PAPEATLFVIVSPVG 193 (379)
T ss_pred ------CCCHHHHHHHHHHHHHhcCc-cc-----CCCCCceEEEeeeeccCCcc------cccc-cCCcceEEEEEcccc
Confidence 24788999999999987644 33 23456789999999987632 3433 335788999999987
Q ss_pred CccccccCCCceEEEec-ccccCcc-ccc--cccccchhHHH--hhCCCCCCEE-EEeCCCCeEEecCcceEEEEEcCCC
Q 021015 162 PFVFGVEGTGARLALVG-RGRDVAE-AKY--SDWVRLRKPLE--KLRPPSVTEL-LLSNDGDQLLEGSITNFFVVCRKDN 234 (318)
Q Consensus 162 ~~~~~~~~~gv~l~~~~-~~r~~~~-~k~--~~~~~~~~~l~--~a~~~G~de~-lL~~~g~~v~Eg~~sNiF~v~~~~~ 234 (318)
+.... -.+|+.|.+.. ..|..|. ... ..-|+..+++. +|+.+||.++ +|+-++++|+|..+.|||+|++++
T Consensus 194 ~yf~~-g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d~~~ItEv~tmNiF~v~~n~- 271 (379)
T KOG0975|consen 194 PYFKS-GFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGDGGYITEVGTMNIFMVKKNE- 271 (379)
T ss_pred hhccc-cccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecCCCceeeccceeEEEEEcCc-
Confidence 65432 13577876644 4454442 111 23355555555 6899999999 888887799999999999999996
Q ss_pred CchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCC-CcEEEEecCHhhHhcccEEEEeccccce-EEEEE
Q 021015 235 SEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG-IPIRELASSWSQHELWKEAFITSVLLFN-VVTTI 312 (318)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~g-i~v~E~~i~~~dL~~adE~Fltns~~gi-pV~~i 312 (318)
.+++|||++.-|||||||+.|+++|++.| ++|+||.++++|+.+|+|+|.|+|...| ||..|
T Consensus 272 ----------------~elvTPp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i 335 (379)
T KOG0975|consen 272 ----------------DELVTPPLDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAAVVSPVGSI 335 (379)
T ss_pred ----------------eeEecCCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhcccceeeeccccce
Confidence 26999999888999999999999999999 9999999999999999999999999999 99988
Q ss_pred Cce
Q 021015 313 GHK 315 (318)
Q Consensus 313 ~~~ 315 (318)
.-+
T Consensus 336 ~~~ 338 (379)
T KOG0975|consen 336 LYK 338 (379)
T ss_pred eec
Confidence 654
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.97 E-value=5.5e-30 Score=227.17 Aligned_cols=183 Identities=13% Similarity=0.070 Sum_probs=132.1
Q ss_pred ceeEeeEEEEcCcccccCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhccc
Q 021015 30 RGAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEA 109 (318)
Q Consensus 30 ~G~FEt~rv~~g~~~i~~l~~Hl~RL~~Sa~~L~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~li~~~~~~~ 109 (318)
.++|||||+++| ++++|++|++||.+||+.+++.. .+++.+.+.+.+.++.
T Consensus 3 ~~l~ETir~~~g--~~~~l~~Hl~RL~~Sa~~l~~~~--------------------~~~~~~~~~~~~~~~~------- 53 (187)
T PRK07101 3 FPLFETIAIEDG--EIQNLSYHQQRYERTLAEFYGKE--------------------APFDLAEIIQPPTELQ------- 53 (187)
T ss_pred CcceEEEeeeCC--eeccHHHHHHHHHHHHHHHcccC--------------------CcccHHHHhhchhhhc-------
Confidence 479999999998 89999999999999999998832 1357777766664431
Q ss_pred chhhhhhcCCCcceEEEEEEEeeCCCCCCccCCCCCCCCcceEEEEEEecCCCccccccCCCceEEEecccccCcccccc
Q 021015 110 LPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDVAEAKYS 189 (318)
Q Consensus 110 ~~~~~~~~~~~~~~~iri~v~g~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~gv~l~~~~~~r~~~~~k~~ 189 (318)
....++|+++ +.+. +.+...|+++.. ..++++...... ....|
T Consensus 54 ----------~~~~r~rl~~-~~g~------------------~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~K 96 (187)
T PRK07101 54 ----------EGLVRCRIDY-NAEI------------------YQVQYFPYQRRP----IRSFQPVYCDDI----DYSLK 96 (187)
T ss_pred ----------CCCEEEEEEe-cCCc------------------EEEEEEcCCCCC----cCceEEEecCCc----ccccc
Confidence 1224555554 3321 123344554422 235655432211 11223
Q ss_pred ccccchhHHH--hhCCCCCCEEEEeCCCCeEEecCcceEEEEEcCCCCchhhhhhhhcCCCCceEEEccCCCCCCccchH
Q 021015 190 DWVRLRKPLE--KLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVI 267 (318)
Q Consensus 190 ~~~~~~~~l~--~a~~~G~de~lL~~~g~~v~Eg~~sNiF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~Git 267 (318)
+.++ +.+. .|++.|+||+++.++| +|+||+++|||++++++ |+||| .|+|+|||
T Consensus 97 t~~r--~~~~~~~a~~~g~de~l~~~~G-~v~E~~~sNi~~~~~~~-------------------~~TP~--~~~L~Gi~ 152 (187)
T PRK07101 97 YTDR--SALNELFAQKGECDEIIIIKNG-LVTDTSIGNLAFFDGKQ-------------------WFTPK--KPLLKGTQ 152 (187)
T ss_pred cCCH--HHHHHHHHHhCCCCEEEEEcCC-EEEEccceEEEEEECCE-------------------EEcCC--CCCccHHH
Confidence 3222 2333 2456899999766778 99999999999999997 99998 48999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccccce
Q 021015 268 RQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFN 307 (318)
Q Consensus 268 R~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~~gi 307 (318)
|+.+|+ .| +|+|+.++++||.+|||+|+|||++|+
T Consensus 153 R~~ll~----~~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 153 RARLLD----EG-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred HHHHHc----cC-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 999998 35 899999999999999999999999985
No 31
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=35.29 E-value=75 Score=24.79 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCcEE---------EEecCHhhHhcccEEEEeccc
Q 021015 269 QLVIEVCRSKGIPIR---------ELASSWSQHELWKEAFITSVL 304 (318)
Q Consensus 269 ~~vl~~~~~~gi~v~---------E~~i~~~dL~~adE~Fltns~ 304 (318)
+.+-+.|++.|+++. +..++.+++..||-+++++..
T Consensus 19 ~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 19 EALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADV 63 (96)
T ss_pred HHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCC
Confidence 445557889999887 446777999999999998765
No 32
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=30.99 E-value=98 Score=23.75 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=27.1
Q ss_pred HHHHHHhCCCcEE---------EEecCHhhHhcccEEEEeccc
Q 021015 271 VIEVCRSKGIPIR---------ELASSWSQHELWKEAFITSVL 304 (318)
Q Consensus 271 vl~~~~~~gi~v~---------E~~i~~~dL~~adE~Fltns~ 304 (318)
+-+.++++|+.+. +..++.+++..||-+++.+..
T Consensus 20 L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 20 LEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 3346788998887 456888999999999998765
No 33
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.26 E-value=1.3e+02 Score=23.50 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHHhCCCcEEEEecCHhhH----hcccEEEEecccc-------------ceEEEEECcee
Q 021015 264 PGVIRQLVIEVCRSKGIPIRELASSWSQH----ELWKEAFITSVLL-------------FNVVTTIGHKN 316 (318)
Q Consensus 264 ~GitR~~vl~~~~~~gi~v~E~~i~~~dL----~~adE~Fltns~~-------------gipV~~i~~~~ 316 (318)
-+++-+.+-+.+++.|++++-...+..++ .++|-++++--++ ++||..|+...
T Consensus 16 SS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 16 TSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeChhh
Confidence 34566788888999999999999998876 5567666553322 34777776543
No 34
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=29.71 E-value=49 Score=23.82 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=31.3
Q ss_pred cceEEEEEcCCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCC
Q 021015 223 ITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG 279 (318)
Q Consensus 223 ~sNiF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~g 279 (318)
-++|++|.+++ .+--.+.+=+|-|+--...-++|.++|
T Consensus 31 ~~~f~ivi~~q-------------------~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 31 ESHFAIVIGEQ-------------------SIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred CCcEEEEECCe-------------------EEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 46888998887 777778888999998888888888765
No 35
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=29.25 E-value=1.1e+02 Score=25.43 Aligned_cols=35 Identities=6% Similarity=0.040 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCcEEEE---------ecCHhhHhcccEEEEecc
Q 021015 269 QLVIEVCRSKGIPIREL---------ASSWSQHELWKEAFITSV 303 (318)
Q Consensus 269 ~~vl~~~~~~gi~v~E~---------~i~~~dL~~adE~Fltns 303 (318)
+.+-..|+++|+.|..+ .++.+|+..||-+++..-
T Consensus 22 eaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD 65 (122)
T COG1445 22 EALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAAD 65 (122)
T ss_pred HHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEec
Confidence 34555788899887655 799999999999998753
No 36
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=27.07 E-value=3.1e+02 Score=24.43 Aligned_cols=69 Identities=12% Similarity=-0.082 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCchhhhhhhhcCCCCceEEEccCCCCCCccchHHHHHHHHHHhCCCcEEEEecCHhhHhcccEEEEeccc
Q 021015 225 NFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVL 304 (318)
Q Consensus 225 NiF~v~~~~~~~~~~~~~~~~~~~~~~~l~TPpl~~giL~GitR~~vl~~~~~~gi~v~E~~i~~~dL~~adE~Fltns~ 304 (318)
++.+|-+| .-+.-+...-.+....++++.|... +.+.+++.+..+.+..+.+..+++..++-+|++...
T Consensus 11 ~vlVvGgG--~va~rk~~~Ll~~ga~VtVvsp~~~---------~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d 79 (205)
T TIGR01470 11 AVLVVGGG--DVALRKARLLLKAGAQLRVIAEELE---------SELTLLAEQGGITWLARCFDADILEGAFLVIAATDD 79 (205)
T ss_pred eEEEECcC--HHHHHHHHHHHHCCCEEEEEcCCCC---------HHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCC
Confidence 55555333 3455667777777788999998543 444455666678888899999999998888876544
No 37
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=26.57 E-value=1.1e+02 Score=23.63 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCcEE---------EEecCHhhHhcccEEEEecccc
Q 021015 269 QLVIEVCRSKGIPIR---------ELASSWSQHELWKEAFITSVLL 305 (318)
Q Consensus 269 ~~vl~~~~~~gi~v~---------E~~i~~~dL~~adE~Fltns~~ 305 (318)
+.+-+.|++.|+.+. +-.++.+++..||-+++.+...
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~~ 49 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIG 49 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCC
Confidence 455567888998887 3358889999999999987653
No 38
>PRK06683 hypothetical protein; Provisional
Probab=21.12 E-value=1.3e+02 Score=22.88 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCHhhHhcc
Q 021015 266 VIRQLVIEVCRSKGIPIRELASSWSQHELW 295 (318)
Q Consensus 266 itR~~vl~~~~~~gi~v~E~~i~~~dL~~a 295 (318)
-+++.+.+.|+..++|+..-. +..||..|
T Consensus 40 ~~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A 68 (82)
T PRK06683 40 RLTHVIIRTALQHNIPITKVE-SVRKLGKV 68 (82)
T ss_pred HHHHHHHHHHHhcCCCEEEEC-CHHHHHHH
Confidence 388999999999999998877 89999876
No 39
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.16 E-value=1.4e+02 Score=22.65 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCHhhHhcc
Q 021015 266 VIRQLVIEVCRSKGIPIRELASSWSQHELW 295 (318)
Q Consensus 266 itR~~vl~~~~~~gi~v~E~~i~~~dL~~a 295 (318)
-+++.+.++|+..++|+.+-. +-.||..|
T Consensus 40 ~~~~~i~~~c~~~~Vp~~~~~-s~~eLG~a 68 (82)
T PRK13602 40 RLTEKVEALANEKGVPVSKVD-SMKKLGKA 68 (82)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CHHHHHHH
Confidence 489999999999999998876 88999876
Done!