RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021015
(318 letters)
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 111 bits (279), Expect = 7e-29
Identities = 59/292 (20%), Positives = 90/292 (30%), Gaps = 67/292 (22%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSS 90
G + R L + HL RL SA+ L P
Sbjct: 9 GVFEGLRAGK--GRLFRLDEHLDRLNRSAKRL-------GLPIPYD-------------- 45
Query: 91 LSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGV 150
E + ++L L +G L + L++ G L G+ S +
Sbjct: 46 ---REELREAL----------KELVAANNGASLYIRPLLTRGVGGL-GVAPPPSPEPT-F 90
Query: 151 FDVSVHFSGYVPFVFGVEGTGARLALVGRGR-----DVAEAKYSDWVRLRKPLEKLRPPS 205
+ Y G RL R +AK + ++
Sbjct: 91 VVFASPVGAY----AKGGEKGVRLITSPDRRRAAPGGTGDAKTGGNLNSVLAKQEAAEAG 146
Query: 206 VTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPG 265
E LL +D + EGS +N F+V E+ T P+ G+LPG
Sbjct: 147 ADEALLLDDNGYVTEGSASNVFIVKD-------------------GELVTPPLDGGILPG 187
Query: 266 VIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFNV-VTTIGHKN 316
+ R VIE+ + GI + E S + E F+T VT I +
Sbjct: 188 ITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRG 239
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 65.5 bits (160), Expect = 2e-12
Identities = 48/263 (18%), Positives = 87/263 (33%), Gaps = 64/263 (24%)
Query: 46 LFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDS 105
+ HL RL SA+ L + +I+ L+
Sbjct: 1 FLLDEHLERLRRSAKAL------IGLPLSIED----------------LRKIIQELL--- 35
Query: 106 MNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMGSDDFLGVFDVSVHFSG-YVPFV 164
EA + +LVS G G+ + + +
Sbjct: 36 --EANG-------PAGSGRLRILVSRGDGGRGLSPPEGAIPIIVSLIALASSAPPRLLIT 86
Query: 165 FGVEGTGARLALVGRGRDVAEAKYSDW-VRLRKPLEKLRPPSVTELLLSNDGDQLLEGSI 223
+ RL+ R +A K +++ + L + LL ++ + EGS
Sbjct: 87 VKL-----RLSSYPVPRPLAGHKTTNYLDNVLAALRAAERAGFDDALLLDEDGNVTEGST 141
Query: 224 TNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIR 283
+N F+V K + T P+ G+LPG+ RQ ++++ + GI +
Sbjct: 142 SNIFIV--KGG-----------------TLYTPPLESGILPGITRQALLDLAKELGIEVE 182
Query: 284 ELASSWSQHEL--WKEAFITSVL 304
E + +L EAF+T+ L
Sbjct: 183 E--RPLTLADLQEADEAFLTNSL 203
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 55.4 bits (134), Expect = 6e-09
Identities = 65/290 (22%), Positives = 95/290 (32%), Gaps = 73/290 (25%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSS 90
G + T R + L + HL RL SAR L I P
Sbjct: 9 GVFETMRALDG--RLFLLDAHLARLERSARRLG------------------IPEPDLPRL 48
Query: 91 LSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVS-GDYGKLSGIENMGSDDFLG 149
+ ES++ A + +G + +++S G G+
Sbjct: 49 RAALESLL--------------AANDIDEG---RIRLILSRGPGGRGYAPSVCPGPALY- 90
Query: 150 VFDVSVHFSGYVPFVFGVEGTGARLALVGRGRDV--AEAK---YSDWVRLRKPLEKLRPP 204
VSV +G V G A K Y + V + E
Sbjct: 91 ---VSVIPLPPAW---RQDGVRLITCPVRLGEQPLLAGLKHLNYLENVLAK--REARDRG 142
Query: 205 SVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLP 264
+ L L DG +++EG+ +N F V KD E+ T + G L
Sbjct: 143 ADEALFLDTDG-RVIEGTASNLFFV--KDG-----------------ELVTPSLDRGGLA 182
Query: 265 GVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFNV-VTTIG 313
G+ RQ VIE+ +KG + E EAF+T+ LL VT I
Sbjct: 183 GITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAID 232
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 55.5 bits (134), Expect = 6e-09
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 24/108 (22%)
Query: 208 ELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVI 267
E LL ++ + EG+ +N F V K + + T P+S G+LPG+
Sbjct: 171 EALLLDEDGYVTEGAGSNVFFV--KGDGV----------------LVTPPLSGGILPGIT 212
Query: 268 RQLVIEVCRSKGIPIRELASSWSQHEL--WKEAFITSVLLFNVVTTIG 313
R ++E+ + G+ + E + +L E F+T+ VT +G
Sbjct: 213 RDSLLELAKELGLTVEE--RPITLEDLKQADEVFLTNTA--AGVTPVG 256
Score = 32.4 bits (74), Expect = 0.27
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 5 RIVFSNGVVSQASDTPSVSTF---LQERRGAYTTTRTHNNGSCLLFWERHLRRLASSARI 61
++ NG + D +S L G + T R +N L + HL RL SA+
Sbjct: 2 GKIWVNGELVPEED-AKLSVLDRGLHYGDGVFETLRAYN--GKLFRLDEHLARLKRSAKR 58
Query: 62 L 62
L
Sbjct: 59 L 59
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 54.9 bits (133), Expect = 1e-08
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 23/97 (23%)
Query: 208 ELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVI 267
E +L + + EGS +N F+V K+ + T P+ +G+LPG+
Sbjct: 163 EAILLDADGLVTEGSSSNVFIV--KNG-----------------VLVTPPLDNGILPGIT 203
Query: 268 RQLVIEVCRSKGIPIRELASSWSQHELW--KEAFITS 302
R VIE+ + GIP+ E +S EL+ E F+TS
Sbjct: 204 RATVIELAKELGIPVEE--RPFSLEELYTADEVFLTS 238
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 43.8 bits (104), Expect = 6e-05
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 220 EGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRSKG 279
EG+ +N ++V + + T P + +LPG+ R +I++ + G
Sbjct: 181 EGASSNAWIVTKDGK------------------LVTRPADNFILPGITRHTLIDLAKELG 222
Query: 280 IPIRELASSWSQHELWKEAFITSVLLFNV-VTTIGHK 315
+ + E + + +EAFIT+ F V I K
Sbjct: 223 LEVEERPFTLQEAYAAREAFITAASSFVFPVVQIDGK 259
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 43.3 bits (103), Expect = 6e-05
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 19/93 (20%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L L + E N F V KD E+ T P+ +LPG+ R
Sbjct: 165 LWLDGAHGYVAEVGTMNIFFV--KDG-----------------ELITPPLDGSILPGITR 205
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWKEAFIT 301
++E+ R GI + E + + E F T
Sbjct: 206 DSILELARDLGIKVEERPITRDELYEADEVFAT 238
Score = 29.5 bits (67), Expect = 2.4
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 32 AYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
AY RT + L + + RL SAR L
Sbjct: 21 AY---RTPDGKIVLFRPDENAERLNRSARRL 48
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 42.4 bits (101), Expect = 1e-04
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 20/76 (26%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
LLL +G + EGS N F+V +D + T P++ +L G+ R
Sbjct: 183 LLLDVEG-YVSEGSGENIFIV--RDG-----------------VLYTPPLTSSILEGITR 222
Query: 269 QLVIEVCRSKGIPIRE 284
VI + + GI + E
Sbjct: 223 DTVITLAKDLGIEVIE 238
Score = 30.5 bits (70), Expect = 1.1
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 32 AYTTTRTHNNGSCLLFWERHLRRLASSARIL 62
AY T G + H +RL +SA+IL
Sbjct: 42 AYDTP----KGPAIFRLREHTKRLFNSAKIL 68
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 42.2 bits (100), Expect = 2e-04
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 23/98 (23%)
Query: 206 VTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPG 265
V E ++ ND + EG+ N F+V K+ ++ T P G L G
Sbjct: 170 VDEAIMLNDEGYVAEGTGDNIFIV--KNG-----------------KLITPPTYAGALEG 210
Query: 266 VIRQLVIEVCRSKGIPIRELASSWSQHELW--KEAFIT 301
+ R VIE+ + GIP+RE ++ H+L+ E F+T
Sbjct: 211 ITRNAVIEIAKELGIPVRE--ELFTLHDLYTADEVFLT 246
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 41.1 bits (97), Expect = 3e-04
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 199 EKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPI 258
+L P E++L N+ ++ EG+ITN F+ + L T P+
Sbjct: 118 AELPPAEADEVILLNERGEVCEGTITNVFL-------DRGGGML-----------TTPPL 159
Query: 259 SDGVLPGVIRQLVIE--VCRSKGIPIRELAS 287
S G+LPGV+R +++ R + + +L S
Sbjct: 160 SCGLLPGVLRAELLDAGRAREAVLTVDDLKS 190
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 39.2 bits (91), Expect = 0.002
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 24/106 (22%)
Query: 198 LEKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAP 257
+E + + L+L+ G + EGS N FVV KD +V T P
Sbjct: 164 IEAAQAGVLEALMLNQQG-YVCEGSGDNVFVV--KDG-----------------KVLTPP 203
Query: 258 ISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELW--KEAFIT 301
G L G+ R VIE+C IP E +++H+++ E F+T
Sbjct: 204 SYLGALEGITRNSVIELCERLSIPCEE--RPFTRHDVYVADEVFLT 247
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 37.7 bits (88), Expect = 0.005
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 24/95 (25%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
+LL +G + EGS N F+V KD + T P++ +LPG+ R
Sbjct: 175 ILLDVEG-YVAEGSGENIFIV--KDG-----------------VLFTPPVTSSILPGITR 214
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELW--KEAFIT 301
VI + + GI + E S+ EL+ EAF T
Sbjct: 215 DTVITLAKELGIEVVE--QPISREELYTADEAFFT 247
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 37.4 bits (87), Expect = 0.006
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 23/91 (25%)
Query: 215 GDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEV 274
G + EGS +N + + KD + T P ++ +L G+ R +++
Sbjct: 171 GGTVTEGSSSNVYGI--KDGV-----------------LYTHPANNLILNGITRMVILAC 211
Query: 275 CRSKGIPIRELASSWSQHELWK--EAFITSV 303
GIP++E +++ EL E F++S
Sbjct: 212 AEENGIPVKEEP--FTKEELLNADEVFVSST 240
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 36.9 bits (86), Expect = 0.010
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 25/118 (21%)
Query: 204 PSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVL 263
P+ + L+ +G + EG ++N F V K + V T + G+L
Sbjct: 162 PNKEGIFLTEEGY-VAEGIVSNLFWV--KGDI-----------------VYTPSLETGIL 201
Query: 264 PGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFIT-SVLLFNVVTTIGHKNLS 318
G+ R VI+V GI ++E +++ EL E F+T S+ +T I ++
Sbjct: 202 NGITRAFVIKVLEELGIEVKE--GFYTKEELLSADEVFVTNSIQEIVPLTRIEERDFP 257
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 35.0 bits (81), Expect = 0.038
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 252 EVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFIT 301
+ T P D L G+ RQ VIE+ + +GI + E + + E F+T
Sbjct: 204 VIHT-PTPDCFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLT 252
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 34.1 bits (79), Expect = 0.069
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 25/113 (22%)
Query: 209 LLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIR 268
L+L DG+ ++E + N F + T + S+ GV GV+R
Sbjct: 161 LVLDTDGN-VVECTAANIFWRK--------GNQVFTPDLSYC----------GV-AGVMR 200
Query: 269 QLVIEVCRSKGIPIRELASSWSQHELWK--EAFITSVLLFNV-VTTIGHKNLS 318
Q V+ + + G I E+ + EL E FIT+ L+ V V IG +
Sbjct: 201 QHVLALLPALGYEIEEVKAGLE--ELLSADEVFITNSLMGVVPVNAIGETSYP 251
Score = 31.8 bits (73), Expect = 0.41
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPN 68
G +TT + N + + HL RL +A L P+
Sbjct: 22 GCFTTAKVRNGK--IELLDLHLERLQDAAARLGIPLPD 57
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 33.8 bits (77), Expect = 0.11
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 253 VQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFIT 301
V T P S +LPGV R+ + E+ R G + E S + +E F T
Sbjct: 248 VSTPPTSGTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCT 296
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 33.6 bits (77), Expect = 0.11
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 249 HSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRE 284
E+ T P+S +LPG+ R ++++ + G+ + E
Sbjct: 202 GDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEE 237
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 32.9 bits (75), Expect = 0.19
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 19/67 (28%)
Query: 218 LLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVIRQLVIEVCRS 277
L E S N F+V KDN + T I +LPG+ R+ +I+V RS
Sbjct: 283 LEEVSSCNIFIV--KDNV-----------------ISTPAIKGTILPGITRKSIIDVARS 323
Query: 278 KGIPIRE 284
+G + E
Sbjct: 324 QGFQVEE 330
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 31.7 bits (73), Expect = 0.44
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 252 EVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRE 284
T P+S +LPG+ R ++++ G+ + E
Sbjct: 245 GTVTPPLSGSILPGITRDSLLQLAEDLGLTVEE 277
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 30.2 bits (69), Expect = 1.2
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARILYNSSPN 68
G +TT R + L RHL+RL + L +
Sbjct: 24 GCFTTARVRDGQVSL--LSRHLQRLQDACERLAIPLDD 59
>gnl|CDD|180774 PRK06953, PRK06953, short chain dehydrogenase; Provisional.
Length = 222
Score = 30.0 bits (68), Expect = 1.2
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 113 ALKERRDGEELAVTVLVSGDYG-KLSGIENMGSDDFLGVFDVSVH-FSGYVPFVFG-VEG 169
L + DGE L V V+G YG + G+E + +DF V +V +P + VE
Sbjct: 61 GLAWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEA 120
Query: 170 TGARLALV 177
G LA++
Sbjct: 121 AGGVLAVL 128
>gnl|CDD|182842 PRK10923, glnG, nitrogen regulation protein NR(I); Provisional.
Length = 469
Score = 29.1 bits (65), Expect = 3.3
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 50 RHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMW-ESMIKSLVNDSMNE 108
R L +A+ +L P LF+S P ++ S ++ L+ W + ++S + ++E
Sbjct: 365 RWLTVMAAGQEVLIQDLPGELFESTVPESTSQMQPDSWATLLAQWADRALRSGHQNLLSE 424
Query: 109 ALP 111
A P
Sbjct: 425 AQP 427
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 28.8 bits (65), Expect = 3.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 44 CLLFWERHLRRLASSARILYNSSPNL 69
C L E HL RLA SA +L P+L
Sbjct: 53 CNL--EAHLERLARSAALLDLPEPDL 76
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 28.5 bits (64), Expect = 4.6
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 197 PLEKLRPPSVTELLLSNDGDQLLE--------GSITNFFVV 229
P K PPSV LL QL+E GSIT FF V
Sbjct: 273 PTSKGYPPSVLSLL-----PQLMERAGKEEGKGSITAFFTV 308
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 28.8 bits (64), Expect = 4.8
Identities = 28/117 (23%), Positives = 39/117 (33%), Gaps = 16/117 (13%)
Query: 119 DGEELAVTVLVSGDYGKLSGIEN-----------MGSDDFLGVFDV-----SVHFSGYVP 162
G+ LA + SG G+ G+ G+ L D S+ F V
Sbjct: 364 LGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVF 423
Query: 163 FVFGVEGTGARLALVGRGRDVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQLL 219
+FG GARL L V A + + + L P + LLL L
Sbjct: 424 EIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDL 480
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 28.5 bits (63), Expect = 4.9
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 74 PTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDY 133
T + EP + +S M M ++ + P K+ ++GEEL ++++ +
Sbjct: 428 DTLAWKEPSKEDQTSEDGKMLAIMGEA---AAALALEPKKKKKEKEGEELQPKLVMNSED 484
Query: 134 GKLSGIENM 142
L+ E M
Sbjct: 485 ASLASQEGM 493
>gnl|CDD|227917 COG5630, ARG2, Acetylglutamate synthase [Amino acid transport and
metabolism].
Length = 495
Score = 28.4 bits (63), Expect = 5.1
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 84 TPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSGDYGKLSGIENMG 143
S++ + ++ L+ S L E R LA +VSGDY + + G
Sbjct: 336 AKPSTTWKDLDLPRLQHLIQSSFKRTLDPHYYETRINTPLA-RAIVSGDYRGAAILTYEG 394
Query: 144 SDD----FLGVFDVSVHFSG 159
S + +L F V G
Sbjct: 395 SGENNVPYLDKFAVLDDAQG 414
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 28.7 bits (64), Expect = 5.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 182 DVAEAKYSDWVRLRKPLEKLRPPSVTELLLSNDGDQL-LEGSITNF 226
++ K + V+ PL + PS+T L LS+ + L SI N
Sbjct: 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL 801
>gnl|CDD|219970 pfam08689, Med5, Mediator complex subunit Med5. The mediator
complex is required for the expression of nearly all RNA
pol II dependent genes in Saccharomyces cerevisiae.
Deletion of the MED5 gene leads to increased
transcription of nuclear genes encoding components of
the oxidative phosphorylation machinery, and decreased
transcription of mitochondrial genes encoding components
of the same machinery. There is no orthologue from
pombe, and this subunit appears to be fungal specific.
Length = 977
Score = 28.2 bits (63), Expect = 6.8
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 72 KSPTPSGLEPIRTPSSSSSLSMWESMIKSLVNDSMNEALPIALKERRDGEELAVTVLVSG 131
K + S + + +SS L + + +KS + M+ +P + ER GE T+ V
Sbjct: 380 KFDSFSRMFDMFDDGNSSLLDVRQDFLKSCI---MHGLIPPSSIERLLGETTMQTLPVGN 436
Query: 132 DYGKLSGIENMGSD 145
GK + + S+
Sbjct: 437 SQGKDELVSQILSN 450
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 27.7 bits (61), Expect = 8.1
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 20/77 (25%)
Query: 208 ELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQTCNNSHSFEVQTAPISDGVLPGVI 267
E L +G + EGS +NFF++ K+ + + T P + +L G+I
Sbjct: 172 EALFVRNG-TVTEGSHSNFFLI--KNGT-----------------LYTHPANHLILNGII 211
Query: 268 RQLVIEVCRSKGIPIRE 284
RQ V+ + ++ IP++E
Sbjct: 212 RQYVLSLAKTLRIPVQE 228
>gnl|CDD|236388 PRK09133, PRK09133, hypothetical protein; Provisional.
Length = 472
Score = 27.7 bits (62), Expect = 8.9
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 164 VFGVEGTGARLALVGRGR-DVAEAKYSDWVR 193
V + GT + ++ DV EAK DW R
Sbjct: 92 VARLRGTDPKKPILLLAHMDVVEAKREDWTR 122
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,160,055
Number of extensions: 1552378
Number of successful extensions: 1327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1320
Number of HSP's successfully gapped: 43
Length of query: 318
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 221
Effective length of database: 6,635,264
Effective search space: 1466393344
Effective search space used: 1466393344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)