RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 021015
         (318 letters)



>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia
          coli [TaxId: 562]}
          Length = 269

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARILYN 64
          G +TT R  +    +     H++RL  + + L  
Sbjct: 24 GCFTTARVIDGK--VSLLSAHIQRLQDACQRLMI 55



 Score = 26.2 bits (56), Expect = 5.4
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 249 HSFEVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWKEAFITSVLLFNV 308
               V T  +    + G++RQ  I +       + E+ +S  +     E  I + L+  +
Sbjct: 183 KGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVM 242

Query: 309 -VTTIGHKNLS 318
            V   G  + S
Sbjct: 243 PVCACGDVSFS 253


>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
          {Escherichia coli [TaxId: 562]}
          Length = 304

 Score = 34.9 bits (79), Expect = 0.009
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 31 GAYTTTRTHNN--GSCLLFWERHLRRLASSARILYNSSPN 68
            +   R +++  G  +     H++RL  SA+I       
Sbjct: 31 SVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQ 70


>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
          strain YM-1 [TaxId: 1409]}
          Length = 277

 Score = 33.0 bits (74), Expect = 0.039
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 31 GAYTTTRTHNNGSCLLFWERHLRRLASSARILYN 64
          G Y   + +N    +     H+ RL +SA  +  
Sbjct: 29 GVYEVVKVYNG--EMFTVNEHIDRLYASAEKIRI 60



 Score = 31.1 bits (69), Expect = 0.14
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 252 EVQTAPISDGVLPGVIRQLVIEVCRSKGIPIRELASSWSQHELWK--EAFITS 302
            + T P ++ +L G+ R +VI       +P++E+   ++ HE  K  E F+TS
Sbjct: 190 ILYTHPANNMILKGITRDVVIACANEINMPVKEI--PFTTHEALKMDELFVTS 240


>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA)
           {Escherichia coli [TaxId: 562]}
          Length = 87

 Score = 27.0 bits (60), Expect = 0.93
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 199 EKLRPPSVTELLLSNDGDQLLEGSITNFFVVCRKDNSEAEDKFLQT 244
           + L+PPS+ +++L ND    +E  I         D   A    L  
Sbjct: 1   DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAV 46


>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator
           Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
          Length = 132

 Score = 27.3 bits (60), Expect = 1.4
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 7/55 (12%)

Query: 48  WERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSLV 102
           W+      A S R  ++  P  +        L    T     SLS++ S    L 
Sbjct: 3   WDEAFSEWARSYRAAFSRHPTAI-------RLLATETVRDPGSLSVYHSAAAGLR 50


>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
           1085]}
          Length = 320

 Score = 27.1 bits (60), Expect = 3.0
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 19/55 (34%)

Query: 260 DGVLPGV--IRQLVIEVCRSKGIPIRELA----------SSWSQ-----HELWKE 297
           DG + G   +RQ   +     G+P+ + A           S+       +  W++
Sbjct: 264 DGPVAGARSLRQ-AWQ-AWRDGVPVLDYAREHKELARAFESFPGDADQIYPGWRK 316


>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator
           SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
          Length = 144

 Score = 25.4 bits (55), Expect = 6.1
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 48  WERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSSSLSMWESMIKSL 101
           W   LR + +S  ++  + P L            +  PS  + L + E +++ L
Sbjct: 3   WREQLRAVLTSYTLVLFAHPQLA-------RSALVARPSGENYLRLVERVLELL 49


>d2j8xa1 c.18.1.1 (A:26-255) Uracil-DNA glycosylase {Epstein-Barr
           virus [TaxId: 10376]}
          Length = 230

 Score = 25.8 bits (56), Expect = 6.9
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 39  HNNGSCLLFWERHLRRLASSARILYNSSPNLLFKSPTPSGLEPIRTPSSSS 89
                  + W       A     L NS  +L+  S  PS L    T  S+ 
Sbjct: 156 RLKACVFMLWGAK----AGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQ 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,154,893
Number of extensions: 52868
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 11
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)